Query 021459
Match_columns 312
No_of_seqs 316 out of 1550
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 03:07:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 4.4E-55 9.5E-60 340.3 28.3 291 13-309 106-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-52 2.7E-57 330.2 23.5 285 19-309 172-458 (459)
3 KOG0286 G-protein beta subunit 100.0 1.1E-47 2.3E-52 289.4 33.4 293 12-309 45-343 (343)
4 KOG0266 WD40 repeat-containing 100.0 3.1E-46 6.7E-51 320.8 35.7 298 14-311 150-454 (456)
5 KOG0315 G-protein beta subunit 100.0 7E-44 1.5E-48 263.2 28.9 270 35-311 11-288 (311)
6 KOG0316 Conserved WD40 repeat- 100.0 9.5E-44 2.1E-48 260.6 26.1 289 11-309 6-297 (307)
7 KOG0293 WD40 repeat-containing 100.0 1.7E-44 3.6E-49 283.9 23.5 296 11-311 213-513 (519)
8 KOG0272 U4/U6 small nuclear ri 100.0 3E-45 6.4E-50 288.7 19.0 249 12-265 207-458 (459)
9 KOG0279 G protein beta subunit 100.0 2.5E-42 5.4E-47 258.8 33.1 290 13-311 6-313 (315)
10 KOG0295 WD40 repeat-containing 100.0 1.2E-43 2.6E-48 274.8 25.6 290 14-309 100-404 (406)
11 KOG0284 Polyadenylation factor 100.0 6.2E-45 1.3E-49 285.8 18.2 284 22-312 96-381 (464)
12 KOG0282 mRNA splicing factor [ 100.0 1.5E-44 3.3E-49 289.2 18.6 295 10-309 202-503 (503)
13 KOG0285 Pleiotropic regulator 100.0 9.9E-43 2.2E-47 269.4 27.2 296 7-311 135-439 (460)
14 KOG0265 U5 snRNP-specific prot 100.0 6.3E-42 1.4E-46 259.1 28.7 293 12-310 37-337 (338)
15 KOG0645 WD40 repeat protein [G 100.0 2.7E-40 6E-45 246.9 33.7 289 12-312 4-312 (312)
16 KOG0271 Notchless-like WD40 re 100.0 1.4E-42 3.1E-47 270.6 22.0 248 58-310 109-396 (480)
17 KOG0296 Angio-associated migra 100.0 4.9E-41 1.1E-45 260.5 29.8 290 15-312 57-399 (399)
18 KOG0279 G protein beta subunit 100.0 8.5E-41 1.8E-45 250.6 27.9 250 14-267 55-313 (315)
19 cd00200 WD40 WD40 domain, foun 100.0 1.3E-39 2.9E-44 265.5 37.2 287 16-309 3-289 (289)
20 KOG0263 Transcription initiati 100.0 1.8E-41 4E-46 286.3 25.1 287 7-311 363-649 (707)
21 KOG0318 WD40 repeat stress pro 100.0 5.3E-39 1.2E-43 260.0 35.3 295 10-312 178-561 (603)
22 KOG0315 G-protein beta subunit 100.0 1.8E-38 3.8E-43 234.7 29.0 270 13-288 31-309 (311)
23 KOG0273 Beta-transducin family 100.0 2.3E-38 4.9E-43 253.1 31.2 278 22-309 235-521 (524)
24 KOG0643 Translation initiation 100.0 6.8E-39 1.5E-43 239.1 25.5 287 17-311 5-317 (327)
25 KOG0291 WD40-repeat-containing 100.0 1.3E-37 2.8E-42 261.7 35.4 298 8-310 131-507 (893)
26 KOG0273 Beta-transducin family 100.0 1.2E-38 2.7E-43 254.6 27.4 289 15-310 172-481 (524)
27 KOG0291 WD40-repeat-containing 100.0 8.2E-38 1.8E-42 262.9 33.6 282 22-310 265-549 (893)
28 PLN00181 protein SPA1-RELATED; 100.0 5.7E-37 1.2E-41 281.7 40.3 283 18-310 479-792 (793)
29 KOG0263 Transcription initiati 100.0 6.2E-39 1.3E-43 271.0 23.8 209 14-224 443-651 (707)
30 KOG0276 Vesicle coat complex C 100.0 6.8E-38 1.5E-42 258.4 26.7 289 14-307 5-297 (794)
31 KOG1446 Histone H3 (Lys4) meth 100.0 3.4E-36 7.4E-41 229.9 33.9 293 9-311 4-303 (311)
32 KOG0318 WD40 repeat stress pro 100.0 2E-36 4.4E-41 245.1 34.3 288 15-310 52-349 (603)
33 KOG0275 Conserved WD40 repeat- 100.0 2.8E-39 6E-44 247.9 16.8 287 20-310 211-508 (508)
34 KOG0281 Beta-TrCP (transducin 100.0 2E-39 4.3E-44 250.6 15.9 270 21-311 196-477 (499)
35 KOG0319 WD40-repeat-containing 100.0 1.3E-37 2.7E-42 261.1 27.2 292 12-310 313-618 (775)
36 KOG0278 Serine/threonine kinas 100.0 1E-38 2.2E-43 236.2 17.5 283 17-310 9-296 (334)
37 KOG0292 Vesicle coat complex C 100.0 2.5E-37 5.4E-42 264.2 27.0 288 18-312 5-322 (1202)
38 KOG0319 WD40-repeat-containing 100.0 7E-37 1.5E-41 256.7 27.3 293 14-311 96-577 (775)
39 KOG0286 G-protein beta subunit 100.0 3E-36 6.4E-41 227.7 27.9 239 22-265 97-343 (343)
40 KOG0640 mRNA cleavage stimulat 100.0 1E-36 2.2E-41 232.3 23.6 292 14-309 104-424 (430)
41 KOG0266 WD40 repeat-containing 100.0 8.3E-36 1.8E-40 256.4 28.8 251 14-267 195-454 (456)
42 KOG0306 WD40-repeat-containing 100.0 2.6E-35 5.7E-40 247.8 29.7 286 16-311 367-664 (888)
43 KOG0284 Polyadenylation factor 100.0 2.6E-37 5.7E-42 243.0 15.4 239 65-311 97-337 (464)
44 KOG0295 WD40 repeat-containing 100.0 8.8E-36 1.9E-40 231.3 21.2 249 13-266 141-405 (406)
45 KOG1407 WD40 repeat protein [F 100.0 1.3E-34 2.9E-39 215.6 26.3 295 6-309 5-309 (313)
46 KOG0313 Microtubule binding pr 100.0 1.7E-34 3.6E-39 225.3 26.6 279 20-309 103-416 (423)
47 KOG0277 Peroxisomal targeting 100.0 1E-34 2.2E-39 215.4 23.3 279 27-310 13-308 (311)
48 KOG0265 U5 snRNP-specific prot 100.0 2E-34 4.4E-39 218.5 23.0 247 57-310 40-295 (338)
49 PTZ00421 coronin; Provisional 100.0 6.3E-33 1.4E-37 238.0 34.7 269 21-291 19-315 (493)
50 KOG0772 Uncharacterized conser 100.0 1.5E-34 3.2E-39 233.9 23.1 296 9-308 154-484 (641)
51 KOG0276 Vesicle coat complex C 100.0 2.5E-34 5.3E-39 237.5 24.5 248 59-310 8-256 (794)
52 KOG0645 WD40 repeat protein [G 100.0 1.4E-33 3E-38 211.2 25.8 239 19-267 58-311 (312)
53 KOG0285 Pleiotropic regulator 100.0 2.5E-34 5.4E-39 223.0 22.3 244 58-310 145-388 (460)
54 KOG0283 WD40 repeat-containing 100.0 4.3E-34 9.3E-39 243.6 25.2 249 15-268 259-577 (712)
55 KOG0310 Conserved WD40 repeat- 100.0 1.3E-33 2.8E-38 226.9 25.3 295 2-305 4-305 (487)
56 KOG0647 mRNA export protein (c 100.0 9.5E-33 2.1E-37 209.7 27.7 282 12-298 17-312 (347)
57 PTZ00420 coronin; Provisional 100.0 4.5E-32 9.7E-37 233.9 35.2 249 40-291 50-318 (568)
58 KOG0288 WD40 repeat protein Ti 100.0 1E-34 2.2E-39 228.8 16.7 288 14-309 167-459 (459)
59 KOG0973 Histone transcription 100.0 5.3E-33 1.2E-37 242.8 29.1 289 20-310 11-354 (942)
60 KOG0296 Angio-associated migra 100.0 7E-33 1.5E-37 215.3 26.3 247 14-267 98-398 (399)
61 KOG0281 Beta-TrCP (transducin 100.0 5.3E-35 1.2E-39 226.1 14.2 229 64-310 197-427 (499)
62 KOG0274 Cdc4 and related F-box 100.0 8.1E-33 1.8E-37 237.7 29.2 273 21-311 207-482 (537)
63 PLN00181 protein SPA1-RELATED; 100.0 3.9E-32 8.5E-37 249.9 35.0 259 43-310 457-737 (793)
64 KOG0305 Anaphase promoting com 100.0 1.7E-32 3.7E-37 227.9 27.8 273 27-310 182-460 (484)
65 KOG0293 WD40 repeat-containing 100.0 1.7E-33 3.7E-38 222.0 20.1 252 12-268 259-514 (519)
66 cd00200 WD40 WD40 domain, foun 100.0 2.6E-31 5.7E-36 216.5 33.5 247 14-265 43-289 (289)
67 KOG0292 Vesicle coat complex C 100.0 4.4E-32 9.5E-37 232.3 29.5 246 16-266 45-320 (1202)
68 KOG0282 mRNA splicing factor [ 100.0 6.8E-34 1.5E-38 228.3 16.5 251 54-310 204-461 (503)
69 KOG1036 Mitotic spindle checkp 100.0 4.7E-31 1E-35 201.1 29.2 273 20-299 11-294 (323)
70 KOG0283 WD40 repeat-containing 100.0 3.7E-32 8.1E-37 231.9 25.9 247 58-310 260-575 (712)
71 PTZ00421 coronin; Provisional 100.0 3.1E-31 6.8E-36 227.6 31.8 214 17-231 70-299 (493)
72 KOG0289 mRNA splicing factor [ 100.0 1.5E-31 3.3E-36 212.2 27.0 281 23-309 220-504 (506)
73 KOG0300 WD40 repeat-containing 100.0 2.8E-32 6E-37 209.0 22.0 293 12-311 138-476 (481)
74 KOG0278 Serine/threonine kinas 100.0 2.5E-33 5.4E-38 207.7 15.3 248 15-270 52-300 (334)
75 KOG0294 WD40 repeat-containing 100.0 9.2E-31 2E-35 200.0 26.7 246 15-269 36-283 (362)
76 KOG0274 Cdc4 and related F-box 100.0 4.9E-31 1.1E-35 226.8 28.2 248 14-275 240-490 (537)
77 KOG0299 U3 snoRNP-associated p 100.0 4E-31 8.6E-36 211.2 25.1 279 15-298 135-444 (479)
78 KOG0313 Microtubule binding pr 100.0 4.2E-31 9E-36 206.4 23.9 248 13-266 135-417 (423)
79 KOG0316 Conserved WD40 repeat- 100.0 1.3E-30 2.9E-35 191.6 24.4 244 56-310 9-256 (307)
80 KOG0277 Peroxisomal targeting 100.0 1.1E-31 2.4E-36 199.4 18.3 242 22-266 60-308 (311)
81 KOG0268 Sof1-like rRNA process 100.0 6.2E-32 1.3E-36 210.0 16.8 281 16-310 60-344 (433)
82 KOG0305 Anaphase promoting com 100.0 1.8E-30 3.8E-35 215.9 25.4 242 21-269 216-463 (484)
83 KOG0308 Conserved WD40 repeat- 100.0 1.5E-31 3.3E-36 221.9 18.7 284 20-309 19-325 (735)
84 KOG0294 WD40 repeat-containing 100.0 7.8E-30 1.7E-34 195.0 26.1 242 57-311 36-281 (362)
85 KOG0310 Conserved WD40 repeat- 100.0 2E-30 4.4E-35 208.6 23.8 243 17-265 63-307 (487)
86 KOG0641 WD40 repeat protein [G 100.0 3.2E-28 6.9E-33 178.4 32.4 286 19-310 29-348 (350)
87 KOG0289 mRNA splicing factor [ 100.0 8.8E-30 1.9E-34 202.3 24.3 252 12-266 251-505 (506)
88 KOG0301 Phospholipase A2-activ 100.0 1.9E-29 4.2E-34 210.9 26.5 282 11-311 3-288 (745)
89 PTZ00420 coronin; Provisional 100.0 3E-28 6.4E-33 210.4 34.0 225 82-311 50-293 (568)
90 KOG0306 WD40-repeat-containing 100.0 1.2E-29 2.6E-34 213.9 24.6 250 12-268 404-665 (888)
91 KOG1408 WD40 repeat protein [F 100.0 8E-29 1.7E-33 208.2 26.6 282 26-310 328-712 (1080)
92 KOG0275 Conserved WD40 repeat- 100.0 1.8E-30 3.9E-35 199.6 15.1 248 13-265 254-507 (508)
93 KOG0639 Transducin-like enhanc 100.0 1.3E-29 2.9E-34 204.9 20.7 279 20-306 417-701 (705)
94 KOG0647 mRNA export protein (c 100.0 1E-28 2.3E-33 187.8 22.8 240 63-311 26-281 (347)
95 KOG1407 WD40 repeat protein [F 100.0 8.6E-29 1.9E-33 184.7 21.8 237 58-301 14-253 (313)
96 KOG2096 WD40 repeat protein [G 100.0 4.8E-28 1E-32 185.6 24.7 288 15-309 79-400 (420)
97 KOG0640 mRNA cleavage stimulat 100.0 3.7E-29 8.1E-34 191.1 17.9 250 13-266 163-425 (430)
98 KOG1446 Histone H3 (Lys4) meth 100.0 4.4E-27 9.5E-32 180.2 29.0 245 60-310 10-261 (311)
99 KOG0288 WD40 repeat protein Ti 100.0 5.1E-29 1.1E-33 196.8 18.3 247 12-264 209-458 (459)
100 KOG0641 WD40 repeat protein [G 100.0 1E-26 2.3E-31 170.5 29.1 256 6-267 73-349 (350)
101 KOG0264 Nucleosome remodeling 100.0 3.5E-28 7.6E-33 194.2 23.2 247 18-267 120-404 (422)
102 KOG2055 WD40 repeat protein [G 100.0 1.8E-27 3.8E-32 190.6 25.8 285 21-311 212-512 (514)
103 KOG1274 WD40 repeat protein [G 100.0 4.4E-27 9.5E-32 202.6 29.9 270 20-297 11-288 (933)
104 KOG4283 Transcription-coupled 100.0 1.2E-27 2.7E-32 181.6 23.4 286 19-310 40-364 (397)
105 KOG0973 Histone transcription 100.0 9E-28 1.9E-32 210.3 26.0 255 13-271 60-359 (942)
106 KOG0643 Translation initiation 100.0 2.1E-27 4.5E-32 177.9 24.1 233 59-298 5-250 (327)
107 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 9.6E-26 2.1E-30 185.8 35.2 269 34-311 1-279 (300)
108 KOG0267 Microtubule severing p 100.0 7.8E-30 1.7E-34 214.2 10.4 254 34-298 4-257 (825)
109 KOG0308 Conserved WD40 repeat- 100.0 1.6E-28 3.5E-33 204.1 16.9 230 69-301 29-277 (735)
110 KOG0299 U3 snoRNP-associated p 100.0 2.1E-27 4.7E-32 190.0 22.6 247 57-311 135-410 (479)
111 KOG1332 Vesicle coat complex C 100.0 5.5E-28 1.2E-32 178.8 17.3 249 61-311 8-286 (299)
112 KOG0264 Nucleosome remodeling 100.0 2.4E-27 5.1E-32 189.5 22.1 247 62-311 122-404 (422)
113 KOG0650 WD40 repeat nucleolar 100.0 1.2E-26 2.5E-31 191.5 25.0 288 12-308 390-732 (733)
114 KOG1539 WD repeat protein [Gen 100.0 1.2E-25 2.6E-30 191.9 31.4 294 12-310 192-605 (910)
115 KOG1332 Vesicle coat complex C 100.0 2.2E-27 4.7E-32 175.7 17.7 246 19-267 8-286 (299)
116 KOG0269 WD40 repeat-containing 100.0 2.6E-27 5.5E-32 200.5 19.4 278 21-301 38-332 (839)
117 KOG2048 WD40 repeat protein [G 100.0 4.2E-25 9.2E-30 184.7 30.7 278 17-302 20-312 (691)
118 KOG0269 WD40 repeat-containing 100.0 7.7E-28 1.7E-32 203.7 14.4 242 24-268 89-341 (839)
119 KOG1273 WD40 repeat protein [G 100.0 3E-26 6.6E-31 175.6 21.7 279 25-310 26-321 (405)
120 KOG1036 Mitotic spindle checkp 100.0 9.7E-26 2.1E-30 172.2 24.2 236 64-310 13-261 (323)
121 KOG0321 WD40 repeat-containing 100.0 5E-26 1.1E-30 189.0 23.4 280 28-311 55-391 (720)
122 KOG1408 WD40 repeat protein [F 100.0 1.8E-26 3.9E-31 194.2 20.3 247 19-268 456-714 (1080)
123 KOG0772 Uncharacterized conser 99.9 4E-26 8.6E-31 185.4 20.8 249 14-265 205-485 (641)
124 KOG0300 WD40 repeat-containing 99.9 4.5E-26 9.7E-31 175.0 19.9 248 55-311 139-428 (481)
125 KOG0646 WD40 repeat protein [G 99.9 1.8E-25 3.9E-30 179.4 24.0 263 40-310 13-306 (476)
126 KOG1539 WD repeat protein [Gen 99.9 6.1E-25 1.3E-29 187.6 28.4 286 17-309 239-646 (910)
127 KOG0646 WD40 repeat protein [G 99.9 1.5E-25 3.3E-30 179.8 22.5 254 36-295 52-335 (476)
128 KOG4328 WD40 protein [Function 99.9 2E-25 4.4E-30 178.7 23.1 293 14-308 178-492 (498)
129 KOG1063 RNA polymerase II elon 99.9 2.3E-25 5E-30 186.7 24.3 295 15-311 354-763 (764)
130 KOG2048 WD40 repeat protein [G 99.9 1.7E-24 3.7E-29 181.1 29.3 237 63-301 24-267 (691)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.5E-23 5.4E-28 171.5 34.7 265 15-289 24-300 (300)
132 KOG2445 Nuclear pore complex c 99.9 1.3E-24 2.8E-29 166.1 24.3 263 19-310 10-317 (361)
133 KOG0301 Phospholipase A2-activ 99.9 3.3E-25 7.2E-30 185.7 22.9 237 15-267 50-288 (745)
134 KOG0267 Microtubule severing p 99.9 2.6E-27 5.7E-32 199.1 10.3 242 12-258 18-259 (825)
135 KOG2106 Uncharacterized conser 99.9 2.5E-23 5.4E-28 168.8 31.4 283 18-312 150-478 (626)
136 KOG0639 Transducin-like enhanc 99.9 1.1E-25 2.4E-30 182.4 16.2 238 21-266 464-703 (705)
137 KOG1274 WD40 repeat protein [G 99.9 3.6E-24 7.8E-29 184.8 26.0 244 62-311 11-262 (933)
138 KOG2106 Uncharacterized conser 99.9 1.3E-22 2.9E-27 164.6 32.1 273 22-310 246-520 (626)
139 KOG0268 Sof1-like rRNA process 99.9 6E-25 1.3E-29 171.3 16.5 248 13-270 100-348 (433)
140 KOG1538 Uncharacterized conser 99.9 1.4E-23 2.9E-28 175.9 22.5 271 24-308 14-290 (1081)
141 KOG1063 RNA polymerase II elon 99.9 1E-22 2.2E-27 170.9 27.5 294 12-310 181-647 (764)
142 KOG0321 WD40 repeat-containing 99.9 1.2E-23 2.6E-28 175.0 20.4 253 14-268 92-392 (720)
143 KOG1009 Chromatin assembly com 99.9 5.1E-23 1.1E-27 162.8 22.6 286 22-308 13-371 (434)
144 KOG0270 WD40 repeat-containing 99.9 1.1E-22 2.5E-27 162.5 24.0 275 27-310 130-448 (463)
145 KOG2919 Guanine nucleotide-bin 99.9 1.6E-22 3.4E-27 155.8 23.9 271 24-298 51-359 (406)
146 KOG4378 Nuclear protein COP1 [ 99.9 3.4E-23 7.4E-28 167.8 20.1 261 24-291 36-305 (673)
147 KOG1273 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 156.0 21.8 237 67-310 26-279 (405)
148 KOG2055 WD40 repeat protein [G 99.9 8.5E-23 1.8E-27 164.0 21.6 243 64-310 213-466 (514)
149 KOG0270 WD40 repeat-containing 99.9 3.4E-23 7.3E-28 165.5 18.9 233 34-272 192-454 (463)
150 KOG2096 WD40 repeat protein [G 99.9 2.7E-22 5.8E-27 154.3 22.9 242 58-309 80-358 (420)
151 COG2319 FOG: WD40 repeat [Gene 99.9 2.9E-20 6.4E-25 159.9 38.7 289 17-311 60-359 (466)
152 KOG1334 WD40 repeat protein [G 99.9 9.8E-24 2.1E-28 170.5 15.6 296 13-310 133-465 (559)
153 KOG4283 Transcription-coupled 99.9 2.9E-22 6.4E-27 152.6 22.1 241 19-266 98-364 (397)
154 KOG0307 Vesicle coat complex C 99.9 3.8E-24 8.2E-29 188.7 13.6 277 27-308 11-324 (1049)
155 KOG4378 Nuclear protein COP1 [ 99.9 4.7E-23 1E-27 167.0 18.1 262 42-310 10-279 (673)
156 KOG1034 Transcriptional repres 99.9 1.2E-21 2.7E-26 151.1 25.0 287 18-309 34-381 (385)
157 KOG0302 Ribosome Assembly prot 99.9 3.8E-22 8.2E-27 156.6 20.4 239 61-301 148-431 (440)
158 KOG0302 Ribosome Assembly prot 99.9 8.5E-23 1.8E-27 160.1 16.7 171 10-180 199-379 (440)
159 KOG1188 WD40 repeat protein [G 99.9 6.1E-22 1.3E-26 153.5 18.8 271 35-309 41-344 (376)
160 COG2319 FOG: WD40 repeat [Gene 99.9 3.8E-19 8.3E-24 153.0 38.1 290 13-311 146-442 (466)
161 KOG0307 Vesicle coat complex C 99.9 4.9E-23 1.1E-27 181.8 13.3 245 23-269 65-329 (1049)
162 KOG1034 Transcriptional repres 99.9 6.1E-22 1.3E-26 152.8 17.1 243 20-266 87-382 (385)
163 KOG4328 WD40 protein [Function 99.9 1.1E-21 2.5E-26 157.4 17.5 252 14-266 226-494 (498)
164 KOG0642 Cell-cycle nuclear pro 99.9 5.5E-22 1.2E-26 163.1 15.9 249 59-311 289-561 (577)
165 KOG0642 Cell-cycle nuclear pro 99.9 8E-22 1.7E-26 162.1 16.3 258 17-279 289-573 (577)
166 KOG4227 WD40 repeat protein [G 99.9 1.1E-20 2.4E-25 149.4 21.9 292 16-312 50-388 (609)
167 KOG0303 Actin-binding protein 99.9 2.7E-21 6E-26 152.6 18.4 209 59-270 76-297 (472)
168 KOG0650 WD40 repeat nucleolar 99.9 6.6E-21 1.4E-25 157.9 21.0 243 58-309 394-678 (733)
169 KOG0649 WD40 repeat protein [G 99.9 1.4E-19 3.1E-24 134.5 25.5 273 23-308 11-313 (325)
170 KOG0303 Actin-binding protein 99.9 1.5E-20 3.3E-25 148.5 20.6 208 16-225 75-297 (472)
171 KOG1445 Tumor-specific antigen 99.9 7.3E-21 1.6E-25 158.9 19.4 124 14-138 71-201 (1012)
172 KOG1517 Guanine nucleotide bin 99.9 4.3E-20 9.2E-25 162.2 23.5 288 19-310 1061-1380(1387)
173 PRK11028 6-phosphogluconolacto 99.9 2.5E-18 5.3E-23 143.5 32.4 269 38-311 6-304 (330)
174 KOG0644 Uncharacterized conser 99.9 1.2E-21 2.5E-26 168.0 9.8 271 13-297 181-456 (1113)
175 KOG2445 Nuclear pore complex c 99.9 8.7E-19 1.9E-23 134.4 22.4 205 104-311 10-256 (361)
176 KOG1963 WD40 repeat protein [G 99.9 3.1E-18 6.7E-23 148.0 28.4 287 19-311 202-538 (792)
177 KOG0322 G-protein beta subunit 99.9 6.3E-20 1.4E-24 137.8 15.8 285 15-311 7-323 (323)
178 KOG2919 Guanine nucleotide-bin 99.8 1.7E-19 3.6E-24 139.3 18.0 222 32-258 121-361 (406)
179 KOG1963 WD40 repeat protein [G 99.8 7.1E-18 1.5E-22 145.8 28.1 291 18-311 12-438 (792)
180 KOG1007 WD repeat protein TSSC 99.8 2.1E-18 4.6E-23 131.3 20.9 260 43-308 39-358 (370)
181 KOG1445 Tumor-specific antigen 99.8 1E-19 2.2E-24 152.1 14.9 238 30-269 587-846 (1012)
182 KOG1538 Uncharacterized conser 99.8 5.8E-19 1.3E-23 148.5 19.2 242 13-267 44-293 (1081)
183 KOG1524 WD40 repeat-containing 99.8 6.1E-19 1.3E-23 144.7 18.7 187 15-219 97-283 (737)
184 PRK01742 tolB translocation pr 99.8 1.5E-18 3.3E-23 149.2 21.8 235 43-291 183-427 (429)
185 KOG1007 WD repeat protein TSSC 99.8 3.2E-18 6.9E-23 130.4 19.8 249 16-268 57-362 (370)
186 KOG0771 Prolactin regulatory e 99.8 3.9E-19 8.5E-24 141.7 15.2 195 26-222 148-354 (398)
187 KOG1587 Cytoplasmic dynein int 99.8 4.3E-17 9.4E-22 140.1 27.5 263 44-310 222-515 (555)
188 KOG0644 Uncharacterized conser 99.8 9.6E-21 2.1E-25 162.4 5.0 241 55-310 181-425 (1113)
189 PRK11028 6-phosphogluconolacto 99.8 1.5E-16 3.3E-21 132.8 30.1 242 22-267 34-304 (330)
190 KOG1310 WD40 repeat protein [G 99.8 6.7E-19 1.5E-23 144.9 14.6 213 13-225 41-306 (758)
191 KOG1009 Chromatin assembly com 99.8 2E-17 4.2E-22 131.5 22.0 255 12-272 55-377 (434)
192 KOG0290 Conserved WD40 repeat- 99.8 4.8E-17 1E-21 124.1 22.9 272 23-298 45-355 (364)
193 KOG1587 Cytoplasmic dynein int 99.8 2.3E-17 4.9E-22 141.8 22.8 243 21-267 241-516 (555)
194 KOG1523 Actin-related protein 99.8 2.3E-17 5.1E-22 127.3 20.4 204 21-225 9-239 (361)
195 KOG0290 Conserved WD40 repeat- 99.8 1.7E-17 3.7E-22 126.5 19.3 243 65-311 45-318 (364)
196 KOG0649 WD40 repeat protein [G 99.8 8E-17 1.7E-21 120.0 22.2 233 66-310 12-273 (325)
197 KOG1272 WD40-repeat-containing 99.8 1.7E-18 3.8E-23 139.6 12.6 262 28-301 135-401 (545)
198 KOG0771 Prolactin regulatory e 99.8 6.3E-18 1.4E-22 134.9 15.4 190 111-302 148-347 (398)
199 KOG1188 WD40 repeat protein [G 99.8 6.3E-18 1.4E-22 131.5 14.7 250 13-266 61-345 (376)
200 PRK01742 tolB translocation pr 99.8 9.1E-17 2E-21 138.3 22.7 207 16-234 197-415 (429)
201 KOG4497 Uncharacterized conser 99.8 1.5E-16 3.2E-21 123.6 21.0 274 28-310 14-390 (447)
202 KOG1240 Protein kinase contain 99.8 5.3E-16 1.1E-20 138.8 27.2 255 13-267 1039-1334(1431)
203 KOG2110 Uncharacterized conser 99.8 8.4E-15 1.8E-19 115.4 30.3 185 34-223 56-249 (391)
204 KOG2139 WD40 repeat protein [G 99.8 3.1E-16 6.8E-21 123.1 21.5 185 22-211 98-299 (445)
205 KOG4227 WD40 repeat protein [G 99.8 1.5E-16 3.2E-21 126.3 19.0 250 59-312 51-323 (609)
206 PF02239 Cytochrom_D1: Cytochr 99.8 5.8E-14 1.2E-18 117.5 34.9 272 37-310 9-346 (369)
207 KOG1310 WD40 repeat protein [G 99.8 3.7E-17 8.1E-22 134.8 14.8 166 56-221 42-230 (758)
208 KOG2321 WD40 repeat protein [G 99.7 1E-15 2.3E-20 126.9 23.0 273 20-301 49-335 (703)
209 KOG1524 WD40 repeat-containing 99.7 2.8E-16 6.2E-21 129.3 19.2 257 21-301 13-278 (737)
210 PRK03629 tolB translocation pr 99.7 7.4E-15 1.6E-19 126.3 28.3 234 45-290 180-428 (429)
211 KOG2110 Uncharacterized conser 99.7 1.6E-14 3.4E-19 113.9 26.9 234 65-311 6-248 (391)
212 KOG1523 Actin-related protein 99.7 5.8E-15 1.3E-19 114.3 21.8 234 63-300 9-269 (361)
213 PRK02889 tolB translocation pr 99.7 6E-15 1.3E-19 126.9 23.9 235 44-290 176-425 (427)
214 KOG1517 Guanine nucleotide bin 99.7 2.2E-15 4.8E-20 133.1 20.2 246 21-268 1108-1382(1387)
215 PRK04922 tolB translocation pr 99.7 1.1E-14 2.3E-19 125.7 24.2 234 44-289 184-432 (433)
216 KOG2394 WD40 protein DMR-N9 [G 99.7 5.9E-16 1.3E-20 127.4 14.6 137 22-159 219-384 (636)
217 KOG1354 Serine/threonine prote 99.7 1.9E-14 4.1E-19 112.6 21.8 282 22-309 25-432 (433)
218 PF08662 eIF2A: Eukaryotic tra 99.7 1.1E-14 2.4E-19 111.0 19.8 152 69-227 10-183 (194)
219 KOG4497 Uncharacterized conser 99.7 8.8E-14 1.9E-18 108.4 24.4 271 23-301 49-424 (447)
220 PRK02889 tolB translocation pr 99.7 2.9E-14 6.4E-19 122.7 24.3 200 17-221 190-402 (427)
221 PRK05137 tolB translocation pr 99.7 1.5E-13 3.3E-18 118.8 28.7 234 44-290 182-433 (435)
222 KOG3881 Uncharacterized conser 99.7 2.5E-14 5.3E-19 113.6 21.3 260 22-290 55-342 (412)
223 KOG0322 G-protein beta subunit 99.7 5.3E-16 1.1E-20 116.9 11.2 158 21-178 149-322 (323)
224 PRK03629 tolB translocation pr 99.7 1.1E-13 2.4E-18 119.0 26.9 209 17-233 193-416 (429)
225 PF08662 eIF2A: Eukaryotic tra 99.7 2.4E-14 5.3E-19 109.1 20.0 151 27-184 10-183 (194)
226 KOG2111 Uncharacterized conser 99.7 3.2E-13 7E-18 104.7 25.7 177 44-224 75-258 (346)
227 KOG1240 Protein kinase contain 99.7 5.2E-14 1.1E-18 126.3 24.4 257 54-312 1038-1335(1431)
228 KOG2111 Uncharacterized conser 99.7 1.2E-12 2.5E-17 101.6 28.5 236 26-268 9-257 (346)
229 PRK05137 tolB translocation pr 99.7 7.7E-14 1.7E-18 120.6 24.8 204 16-226 195-416 (435)
230 PRK04922 tolB translocation pr 99.7 1.3E-13 2.9E-18 119.0 24.4 201 16-223 197-412 (433)
231 KOG3881 Uncharacterized conser 99.6 6.9E-14 1.5E-18 111.1 18.9 206 17-226 100-324 (412)
232 KOG2394 WD40 protein DMR-N9 [G 99.6 1.7E-14 3.8E-19 118.9 14.6 170 32-202 183-384 (636)
233 PF02239 Cytochrom_D1: Cytochr 99.6 2.1E-11 4.5E-16 102.2 31.4 256 16-276 30-356 (369)
234 KOG1272 WD40-repeat-containing 99.6 4E-15 8.7E-20 120.5 8.5 232 64-309 129-360 (545)
235 KOG2139 WD40 repeat protein [G 99.6 3.2E-12 6.9E-17 101.0 24.1 243 21-266 139-430 (445)
236 PRK00178 tolB translocation pr 99.6 6.8E-12 1.5E-16 108.6 27.8 234 45-290 180-428 (430)
237 KOG1409 Uncharacterized conser 99.6 5.2E-13 1.1E-17 104.6 18.1 212 13-224 15-272 (404)
238 TIGR02800 propeller_TolB tol-p 99.6 7.6E-12 1.6E-16 108.1 27.0 212 44-266 170-396 (417)
239 PF10282 Lactonase: Lactonase, 99.6 4.4E-10 9.5E-15 94.2 36.5 266 44-311 13-322 (345)
240 KOG0974 WD-repeat protein WDR6 99.6 2.1E-13 4.5E-18 120.6 17.0 192 28-223 93-289 (967)
241 PRK04792 tolB translocation pr 99.6 9.4E-12 2E-16 107.6 26.5 234 45-290 199-447 (448)
242 TIGR02800 propeller_TolB tol-p 99.6 4.7E-12 1E-16 109.4 24.7 198 16-220 183-395 (417)
243 KOG1334 WD40 repeat protein [G 99.5 1.6E-13 3.5E-18 112.0 13.6 252 56-310 134-423 (559)
244 KOG2315 Predicted translation 99.5 4.1E-11 8.8E-16 99.9 27.4 273 23-311 35-390 (566)
245 PF10282 Lactonase: Lactonase, 99.5 6.1E-10 1.3E-14 93.4 34.8 241 24-267 38-322 (345)
246 KOG4190 Uncharacterized conser 99.5 1.1E-13 2.3E-18 115.1 11.8 277 15-301 728-1028(1034)
247 PRK01029 tolB translocation pr 99.5 2E-11 4.2E-16 104.9 25.2 210 18-230 180-411 (428)
248 PRK00178 tolB translocation pr 99.5 2.1E-11 4.6E-16 105.6 25.4 199 17-222 193-406 (430)
249 PRK04792 tolB translocation pr 99.5 2.7E-11 5.9E-16 104.8 24.7 205 18-230 213-432 (448)
250 KOG1064 RAVE (regulator of V-A 99.5 6.6E-13 1.4E-17 123.4 13.2 196 21-231 2207-2407(2439)
251 PRK01029 tolB translocation pr 99.5 1.1E-10 2.5E-15 100.2 25.9 239 44-291 165-426 (428)
252 KOG0974 WD-repeat protein WDR6 99.4 2E-12 4.3E-17 114.6 13.6 148 29-179 140-288 (967)
253 TIGR02658 TTQ_MADH_Hv methylam 99.4 7.3E-09 1.6E-13 85.3 33.2 255 44-310 27-329 (352)
254 KOG4547 WD40 repeat-containing 99.4 5.5E-11 1.2E-15 99.6 20.7 189 117-311 3-220 (541)
255 KOG1064 RAVE (regulator of V-A 99.4 1.7E-12 3.7E-17 120.8 12.8 198 63-276 2207-2407(2439)
256 PF04762 IKI3: IKI3 family; I 99.4 2.5E-09 5.5E-14 99.3 32.4 282 21-310 74-455 (928)
257 KOG4547 WD40 repeat-containing 99.4 4.3E-10 9.3E-15 94.4 24.5 190 31-223 2-221 (541)
258 KOG1409 Uncharacterized conser 99.4 2.4E-11 5.3E-16 95.4 16.1 248 55-311 15-270 (404)
259 KOG1354 Serine/threonine prote 99.4 6.2E-11 1.3E-15 93.2 16.9 245 64-312 25-360 (433)
260 COG4946 Uncharacterized protei 99.4 4.8E-09 1E-13 86.3 28.1 174 30-210 327-506 (668)
261 KOG2321 WD40 repeat protein [G 99.4 1.7E-10 3.7E-15 96.5 19.5 231 29-268 101-344 (703)
262 COG2706 3-carboxymuconate cycl 99.4 1.2E-08 2.6E-13 81.2 28.5 267 43-311 15-321 (346)
263 KOG0309 Conserved WD40 repeat- 99.4 2.3E-11 5E-16 104.6 14.3 299 8-311 9-339 (1081)
264 KOG2314 Translation initiation 99.3 1.4E-09 3E-14 90.9 23.6 272 24-301 251-559 (698)
265 TIGR03300 assembly_YfgL outer 99.3 3.6E-09 7.8E-14 90.1 26.9 256 34-307 105-375 (377)
266 COG2706 3-carboxymuconate cycl 99.3 5.4E-08 1.2E-12 77.6 30.5 247 20-267 37-321 (346)
267 KOG0280 Uncharacterized conser 99.3 1.3E-10 2.9E-15 89.5 15.4 153 26-180 125-285 (339)
268 KOG2041 WD40 repeat protein [G 99.3 4.7E-10 1E-14 96.5 19.8 269 21-297 13-326 (1189)
269 COG5354 Uncharacterized protei 99.3 4.8E-09 1E-13 86.9 24.8 275 23-311 72-395 (561)
270 KOG0280 Uncharacterized conser 99.3 1.2E-09 2.6E-14 84.3 19.7 264 42-310 44-332 (339)
271 TIGR03300 assembly_YfgL outer 99.3 1.7E-08 3.7E-13 86.0 29.2 260 33-310 64-337 (377)
272 KOG2041 WD40 repeat protein [G 99.3 3.2E-11 6.9E-16 103.4 12.0 233 66-302 16-281 (1189)
273 TIGR02658 TTQ_MADH_Hv methylam 99.3 1.3E-07 2.8E-12 78.0 32.6 237 30-275 53-338 (352)
274 PLN02919 haloacid dehalogenase 99.3 2.1E-08 4.7E-13 94.9 31.7 241 26-271 571-892 (1057)
275 KOG4190 Uncharacterized conser 99.3 1.4E-11 3.1E-16 102.7 8.7 205 100-309 728-946 (1034)
276 KOG1912 WD40 repeat protein [G 99.3 2.5E-10 5.4E-15 98.8 15.9 288 10-299 43-486 (1062)
277 KOG2314 Translation initiation 99.3 9.8E-09 2.1E-13 86.0 24.5 274 25-310 213-524 (698)
278 KOG4714 Nucleoporin [Nuclear s 99.2 3.1E-10 6.8E-15 86.1 12.4 165 15-180 82-255 (319)
279 PF08450 SGL: SMP-30/Gluconola 99.2 4.7E-07 1E-11 72.4 31.6 220 69-298 4-244 (246)
280 KOG0309 Conserved WD40 repeat- 99.2 2.4E-10 5.2E-15 98.5 12.9 245 24-268 69-340 (1081)
281 KOG2315 Predicted translation 99.2 1.1E-08 2.4E-13 85.6 22.3 193 21-223 164-391 (566)
282 COG5170 CDC55 Serine/threonine 99.2 2.4E-09 5.2E-14 83.5 17.2 208 21-230 25-318 (460)
283 PLN02919 haloacid dehalogenase 99.2 1.1E-07 2.3E-12 90.3 31.3 236 69-311 572-888 (1057)
284 PF04762 IKI3: IKI3 family; I 99.2 1.7E-07 3.7E-12 87.4 31.7 274 23-302 22-372 (928)
285 PRK04043 tolB translocation pr 99.2 5.7E-08 1.2E-12 83.2 26.7 191 24-223 189-401 (419)
286 COG5354 Uncharacterized protei 99.2 5.4E-08 1.2E-12 80.8 23.4 277 21-310 31-347 (561)
287 KOG4532 WD40-like repeat conta 99.1 3.9E-08 8.5E-13 75.3 20.2 202 27-231 72-291 (344)
288 PRK04043 tolB translocation pr 99.1 4.2E-07 9.2E-12 77.9 28.7 183 109-302 189-390 (419)
289 KOG4532 WD40-like repeat conta 99.1 6.3E-08 1.4E-12 74.2 20.4 253 41-300 49-323 (344)
290 PF13360 PQQ_2: PQQ-like domai 99.1 4.8E-07 1E-11 71.9 26.8 218 43-272 2-235 (238)
291 KOG3914 WD repeat protein WDR4 99.1 2.9E-09 6.3E-14 85.6 13.2 162 67-230 65-231 (390)
292 PF15492 Nbas_N: Neuroblastoma 99.1 6.2E-07 1.3E-11 69.7 25.3 231 28-278 3-270 (282)
293 KOG1832 HIV-1 Vpr-binding prot 99.1 6.8E-11 1.5E-15 103.8 3.9 201 12-228 1091-1297(1516)
294 KOG3914 WD repeat protein WDR4 99.1 4.3E-09 9.3E-14 84.6 13.1 159 26-187 66-231 (390)
295 KOG0882 Cyclophilin-related pe 99.1 4.5E-09 9.7E-14 85.8 13.2 214 13-230 44-313 (558)
296 KOG1912 WD40 repeat protein [G 99.0 1.2E-07 2.6E-12 82.7 21.8 243 21-267 14-304 (1062)
297 KOG0882 Cyclophilin-related pe 99.0 4.8E-09 1E-13 85.7 12.5 207 20-229 7-238 (558)
298 PF08450 SGL: SMP-30/Gluconola 99.0 4.4E-06 9.6E-11 66.8 31.8 215 27-251 4-239 (246)
299 PF07433 DUF1513: Protein of u 99.0 3.9E-06 8.5E-11 67.1 28.1 204 25-230 7-255 (305)
300 PRK11138 outer membrane biogen 99.0 7.8E-07 1.7E-11 76.3 26.3 258 34-308 120-391 (394)
301 KOG4714 Nucleoporin [Nuclear s 99.0 1.4E-08 2.9E-13 77.4 12.9 152 72-223 97-255 (319)
302 COG4946 Uncharacterized protei 99.0 9.7E-07 2.1E-11 73.1 24.3 145 19-166 356-505 (668)
303 KOG1275 PAB-dependent poly(A) 99.0 2.4E-08 5.3E-13 88.4 15.4 182 34-221 147-341 (1118)
304 PF15492 Nbas_N: Neuroblastoma 99.0 8E-07 1.7E-11 69.1 21.4 195 26-233 47-270 (282)
305 KOG2695 WD40 repeat protein [G 99.0 3.5E-09 7.5E-14 83.7 8.6 148 38-188 228-385 (425)
306 PF00400 WD40: WD domain, G-be 99.0 3.4E-09 7.3E-14 58.2 6.1 37 14-50 3-39 (39)
307 PF13360 PQQ_2: PQQ-like domai 98.9 2.2E-06 4.7E-11 68.2 23.2 189 32-228 34-236 (238)
308 KOG1645 RING-finger-containing 98.9 1.5E-07 3.2E-12 76.1 16.0 245 16-267 187-461 (463)
309 KOG1920 IkappaB kinase complex 98.9 2.1E-06 4.5E-11 78.8 24.7 276 22-309 68-365 (1265)
310 PF00400 WD40: WD domain, G-be 98.9 8.3E-09 1.8E-13 56.6 6.3 39 54-92 1-39 (39)
311 KOG1832 HIV-1 Vpr-binding prot 98.9 2.4E-09 5.1E-14 94.4 4.8 188 100-298 1094-1285(1516)
312 KOG2695 WD40 repeat protein [G 98.8 1.5E-08 3.2E-13 80.2 8.2 161 123-288 228-401 (425)
313 PF07433 DUF1513: Protein of u 98.8 1.7E-05 3.8E-10 63.5 25.6 225 67-298 7-275 (305)
314 PF00930 DPPIV_N: Dipeptidyl p 98.8 1.8E-05 4E-10 66.7 26.4 264 31-298 1-346 (353)
315 KOG1645 RING-finger-containing 98.8 7.4E-07 1.6E-11 72.2 16.1 257 46-310 175-460 (463)
316 KOG2114 Vacuolar assembly/sort 98.8 1E-05 2.2E-10 71.9 23.6 195 29-225 30-246 (933)
317 PRK11138 outer membrane biogen 98.7 4.7E-05 1E-09 65.4 27.3 229 33-272 68-317 (394)
318 KOG3617 WD40 and TPR repeat-co 98.7 7.8E-07 1.7E-11 78.7 15.3 190 27-229 20-226 (1416)
319 COG5170 CDC55 Serine/threonine 98.7 7.4E-07 1.6E-11 69.9 12.8 201 107-311 26-309 (460)
320 KOG3621 WD40 repeat-containing 98.6 3E-05 6.5E-10 67.6 22.5 118 21-138 32-155 (726)
321 KOG2066 Vacuolar assembly/sort 98.6 1.5E-05 3.3E-10 70.3 20.7 184 21-222 38-233 (846)
322 KOG3621 WD40 repeat-containing 98.6 6.5E-07 1.4E-11 77.5 11.3 118 63-180 32-155 (726)
323 KOG2114 Vacuolar assembly/sort 98.6 1.5E-05 3.2E-10 70.9 19.7 204 71-280 30-257 (933)
324 KOG1275 PAB-dependent poly(A) 98.6 2.5E-06 5.3E-11 76.1 14.4 182 118-309 146-340 (1118)
325 PF11768 DUF3312: Protein of u 98.6 2E-06 4.3E-11 73.4 12.9 82 106-189 258-339 (545)
326 cd00216 PQQ_DH Dehydrogenases 98.5 0.0006 1.3E-08 60.2 28.0 236 35-276 111-433 (488)
327 KOG2066 Vacuolar assembly/sort 98.5 1E-05 2.2E-10 71.4 16.0 180 108-310 40-232 (846)
328 KOG1920 IkappaB kinase complex 98.5 0.00015 3.2E-09 67.2 23.7 236 65-310 69-321 (1265)
329 PF08596 Lgl_C: Lethal giant l 98.5 0.00029 6.3E-09 59.8 24.0 265 24-299 3-326 (395)
330 PRK02888 nitrous-oxide reducta 98.4 0.00015 3.3E-09 63.8 21.7 175 30-223 200-405 (635)
331 PF11768 DUF3312: Protein of u 98.4 5E-06 1.1E-10 71.0 12.2 75 19-95 256-330 (545)
332 PF04053 Coatomer_WDAD: Coatom 98.4 0.00059 1.3E-08 58.8 24.4 229 15-268 25-263 (443)
333 KOG4649 PQQ (pyrrolo-quinoline 98.4 0.00048 1E-08 53.4 23.5 261 34-311 63-351 (354)
334 PF06977 SdiA-regulated: SdiA- 98.3 0.00077 1.7E-08 53.3 25.4 210 7-219 6-247 (248)
335 KOG1008 Uncharacterized conser 98.3 3.1E-07 6.7E-12 78.7 2.3 199 22-222 56-275 (783)
336 PF06433 Me-amine-dh_H: Methyl 98.3 0.0016 3.4E-08 53.3 24.7 260 44-310 17-319 (342)
337 KOG3617 WD40 and TPR repeat-co 98.2 6.4E-05 1.4E-09 67.1 14.9 70 25-94 62-131 (1416)
338 KOG1008 Uncharacterized conser 98.2 5E-07 1.1E-11 77.4 1.3 201 64-267 56-275 (783)
339 PF14583 Pectate_lyase22: Olig 98.2 0.0027 5.8E-08 52.9 29.8 265 29-300 42-371 (386)
340 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0014 3E-08 55.5 21.4 233 73-309 1-311 (353)
341 PRK02888 nitrous-oxide reducta 98.2 0.0036 7.8E-08 55.4 24.0 146 111-268 238-405 (635)
342 COG0823 TolB Periplasmic compo 98.2 0.00016 3.4E-09 62.1 15.6 185 21-211 191-388 (425)
343 KOG4640 Anaphase-promoting com 98.1 1.6E-05 3.4E-10 68.4 9.1 95 21-116 19-114 (665)
344 COG0823 TolB Periplasmic compo 98.1 0.00091 2E-08 57.5 18.7 160 64-229 192-365 (425)
345 PF04053 Coatomer_WDAD: Coatom 98.1 0.0056 1.2E-07 52.9 25.7 143 63-222 31-173 (443)
346 COG3391 Uncharacterized conser 98.1 0.0054 1.2E-07 52.4 25.7 200 27-231 78-292 (381)
347 cd00216 PQQ_DH Dehydrogenases 98.0 0.01 2.2E-07 52.6 27.7 194 34-230 61-327 (488)
348 PF00780 CNH: CNH domain; Int 98.0 0.0062 1.3E-07 49.5 27.6 228 32-277 5-265 (275)
349 smart00320 WD40 WD40 repeats. 97.9 3.4E-05 7.5E-10 41.2 5.2 36 15-50 5-40 (40)
350 PF02897 Peptidase_S9_N: Proly 97.9 0.011 2.4E-07 51.2 31.1 202 24-227 125-362 (414)
351 PF04841 Vps16_N: Vps16, N-ter 97.9 0.012 2.6E-07 50.8 28.5 193 27-228 33-252 (410)
352 KOG4640 Anaphase-promoting com 97.9 9.6E-05 2.1E-09 63.8 9.5 93 108-201 21-114 (665)
353 COG3391 Uncharacterized conser 97.9 0.013 2.7E-07 50.2 29.1 261 24-290 32-309 (381)
354 PF03178 CPSF_A: CPSF A subuni 97.9 0.011 2.4E-07 49.3 24.4 174 44-222 2-202 (321)
355 smart00320 WD40 WD40 repeats. 97.8 8.8E-05 1.9E-09 39.5 5.8 38 55-92 3-40 (40)
356 COG3490 Uncharacterized protei 97.8 0.0067 1.5E-07 47.9 17.6 233 26-265 71-346 (366)
357 PF08553 VID27: VID27 cytoplas 97.8 0.0012 2.6E-08 60.4 15.4 136 168-309 501-645 (794)
358 PF06433 Me-amine-dh_H: Methyl 97.8 0.014 3E-07 47.9 27.8 244 27-277 40-330 (342)
359 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.012 2.5E-07 46.0 25.5 138 34-174 23-160 (354)
360 KOG4441 Proteins containing BT 97.7 0.011 2.4E-07 53.2 20.2 226 75-310 284-545 (571)
361 KOG2444 WD40 repeat protein [G 97.7 4.5E-05 9.7E-10 57.7 4.3 142 164-311 33-177 (238)
362 PRK13616 lipoprotein LpqB; Pro 97.7 0.0062 1.3E-07 54.8 18.4 146 23-177 350-523 (591)
363 PF06977 SdiA-regulated: SdiA- 97.7 0.016 3.6E-07 45.9 22.8 194 102-297 16-239 (248)
364 PRK13616 lipoprotein LpqB; Pro 97.7 0.012 2.7E-07 52.9 19.5 147 65-220 350-523 (591)
365 PHA02713 hypothetical protein; 97.7 0.012 2.6E-07 52.9 19.6 184 118-310 303-532 (557)
366 PHA02713 hypothetical protein; 97.6 0.015 3.3E-07 52.2 19.7 189 75-271 303-537 (557)
367 PF08596 Lgl_C: Lethal giant l 97.6 0.029 6.3E-07 47.9 20.3 198 13-211 77-325 (395)
368 PF08553 VID27: VID27 cytoplas 97.6 0.0027 5.8E-08 58.2 14.9 135 42-178 502-646 (794)
369 COG3204 Uncharacterized protei 97.6 0.028 6E-07 44.8 19.6 163 18-180 81-264 (316)
370 KOG2395 Protein involved in va 97.5 0.003 6.5E-08 54.0 12.6 132 164-298 349-490 (644)
371 COG3386 Gluconolactonase [Carb 97.5 0.043 9.3E-07 45.1 24.5 201 28-234 30-254 (307)
372 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.4 0.08 1.7E-06 47.3 28.3 150 35-184 121-338 (527)
373 PF03178 CPSF_A: CPSF A subuni 97.4 0.053 1.2E-06 45.2 26.1 168 129-302 62-258 (321)
374 KOG2079 Vacuolar assembly/sort 97.4 0.0058 1.3E-07 56.6 13.6 98 75-172 98-198 (1206)
375 KOG4441 Proteins containing BT 97.4 0.053 1.2E-06 48.9 19.7 221 31-260 282-534 (571)
376 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.021 4.6E-07 38.6 14.5 100 25-132 2-109 (111)
377 PF14583 Pectate_lyase22: Olig 97.2 0.094 2E-06 44.0 23.7 244 50-300 16-303 (386)
378 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.029 6.3E-07 38.0 14.7 100 67-174 2-109 (111)
379 KOG2395 Protein involved in va 97.2 0.0085 1.9E-07 51.3 12.0 143 33-178 344-499 (644)
380 KOG2444 WD40 repeat protein [G 97.2 0.00059 1.3E-08 51.8 4.6 141 79-222 33-177 (238)
381 COG3386 Gluconolactonase [Carb 97.2 0.1 2.2E-06 43.0 23.0 220 70-300 30-276 (307)
382 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0021 4.4E-08 36.2 5.3 30 22-51 11-40 (47)
383 PF02897 Peptidase_S9_N: Proly 97.1 0.16 3.5E-06 44.0 30.9 221 68-293 127-384 (414)
384 KOG1897 Damage-specific DNA bi 97.1 0.24 5.3E-06 46.1 28.1 276 24-308 585-897 (1096)
385 KOG2079 Vacuolar assembly/sort 97.0 0.0054 1.2E-07 56.8 9.8 105 160-266 98-202 (1206)
386 PF00780 CNH: CNH domain; Int 97.0 0.14 3.1E-06 41.6 24.1 218 74-310 5-254 (275)
387 PF14655 RAB3GAP2_N: Rab3 GTPa 97.0 0.2 4.4E-06 42.9 21.2 81 151-231 309-407 (415)
388 PF14655 RAB3GAP2_N: Rab3 GTPa 96.9 0.22 4.8E-06 42.7 24.7 82 194-275 309-406 (415)
389 PF10647 Gmad1: Lipoprotein Lp 96.9 0.16 3.5E-06 40.7 16.6 145 24-171 25-187 (253)
390 PHA03098 kelch-like protein; P 96.8 0.16 3.5E-06 45.7 17.7 187 117-311 293-511 (534)
391 PF04841 Vps16_N: Vps16, N-ter 96.8 0.27 5.9E-06 42.5 24.0 49 87-138 62-110 (410)
392 PF14870 PSII_BNR: Photosynthe 96.8 0.2 4.4E-06 41.0 21.3 153 63-219 143-301 (302)
393 PHA03098 kelch-like protein; P 96.8 0.21 4.5E-06 45.0 17.9 187 33-226 294-515 (534)
394 COG3490 Uncharacterized protei 96.8 0.2 4.4E-06 39.9 21.2 95 68-168 71-180 (366)
395 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.7 0.4 8.7E-06 43.0 22.5 190 34-227 69-338 (527)
396 TIGR02604 Piru_Ver_Nterm putat 96.7 0.21 4.5E-06 42.6 16.4 142 24-168 15-202 (367)
397 PF15390 DUF4613: Domain of un 96.6 0.17 3.7E-06 44.5 14.9 149 65-222 20-186 (671)
398 PF12894 Apc4_WD40: Anaphase-p 96.6 0.011 2.3E-07 33.3 5.3 30 149-178 11-40 (47)
399 PF10168 Nup88: Nuclear pore c 96.6 0.64 1.4E-05 43.1 20.5 29 21-49 83-111 (717)
400 PRK10115 protease 2; Provision 96.5 0.73 1.6E-05 42.8 31.6 112 23-136 127-254 (686)
401 KOG3630 Nuclear pore complex, 96.5 0.057 1.2E-06 50.8 11.9 185 24-209 43-260 (1405)
402 PF05694 SBP56: 56kDa selenium 96.2 0.64 1.4E-05 39.7 23.1 202 23-225 65-345 (461)
403 PHA02790 Kelch-like protein; P 96.2 0.82 1.8E-05 40.6 18.8 185 75-268 271-471 (480)
404 PHA02790 Kelch-like protein; P 96.1 0.94 2E-05 40.2 18.3 181 33-224 271-472 (480)
405 PF10647 Gmad1: Lipoprotein Lp 96.1 0.57 1.2E-05 37.6 17.5 145 66-214 25-187 (253)
406 TIGR03074 PQQ_membr_DH membran 96.0 1.3 2.9E-05 41.5 22.3 231 34-274 194-484 (764)
407 PF12234 Rav1p_C: RAVE protein 95.9 0.71 1.5E-05 41.8 15.7 110 67-178 32-155 (631)
408 PF05096 Glu_cyclase_2: Glutam 95.8 0.72 1.6E-05 36.8 24.2 185 108-298 45-249 (264)
409 PF15390 DUF4613: Domain of un 95.8 0.2 4.3E-06 44.1 11.4 118 20-137 54-186 (671)
410 PF05096 Glu_cyclase_2: Glutam 95.8 0.75 1.6E-05 36.7 23.8 183 23-211 45-249 (264)
411 TIGR03118 PEPCTERM_chp_1 conse 95.7 0.92 2E-05 36.8 23.8 234 67-301 25-325 (336)
412 PF10313 DUF2415: Uncharacteri 95.4 0.1 2.2E-06 28.5 5.4 32 151-182 2-36 (43)
413 KOG2377 Uncharacterized conser 95.4 0.12 2.7E-06 43.8 8.3 117 21-139 65-187 (657)
414 COG3204 Uncharacterized protei 95.3 1.2 2.6E-05 35.9 20.4 165 104-268 82-264 (316)
415 KOG1916 Nuclear protein, conta 95.2 0.058 1.3E-06 49.6 6.5 163 18-184 128-328 (1283)
416 KOG4499 Ca2+-binding protein R 95.2 1.1 2.4E-05 34.8 18.0 145 150-302 109-278 (310)
417 KOG3630 Nuclear pore complex, 95.2 0.7 1.5E-05 44.0 13.1 112 110-222 103-228 (1405)
418 PRK10115 protease 2; Provision 95.0 3.1 6.8E-05 38.8 29.5 110 66-178 128-254 (686)
419 KOG1897 Damage-specific DNA bi 94.9 3.6 7.8E-05 38.9 27.1 73 22-94 530-613 (1096)
420 PF10313 DUF2415: Uncharacteri 94.8 0.18 3.8E-06 27.6 5.2 32 108-139 1-35 (43)
421 PF10168 Nup88: Nuclear pore c 94.8 2.1 4.5E-05 39.9 15.2 72 65-137 85-179 (717)
422 PLN02193 nitrile-specifier pro 94.7 3 6.5E-05 37.0 20.0 147 118-269 228-412 (470)
423 PF07569 Hira: TUP1-like enhan 94.6 0.62 1.3E-05 36.4 10.1 72 157-229 18-102 (219)
424 COG5167 VID27 Protein involved 94.6 1.1 2.4E-05 39.0 12.0 143 33-179 478-632 (776)
425 KOG4460 Nuclear pore complex, 94.6 2.2 4.7E-05 37.4 13.6 24 110-133 106-129 (741)
426 KOG2280 Vacuolar assembly/sort 94.5 1.8 4E-05 39.5 13.6 49 130-180 65-113 (829)
427 PF12234 Rav1p_C: RAVE protein 94.5 2 4.3E-05 39.1 13.9 111 24-136 31-155 (631)
428 TIGR02604 Piru_Ver_Nterm putat 94.3 2.9 6.4E-05 35.7 15.2 141 66-211 15-202 (367)
429 COG4257 Vgb Streptogramin lyas 94.2 2.3 5E-05 34.1 22.5 240 24-269 63-307 (353)
430 TIGR03548 mutarot_permut cycli 94.0 3.1 6.7E-05 34.7 21.1 140 118-258 72-233 (323)
431 PF05694 SBP56: 56kDa selenium 94.0 3.6 7.8E-05 35.4 20.4 192 119-311 87-342 (461)
432 PF14870 PSII_BNR: Photosynthe 94.0 2.9 6.4E-05 34.4 30.9 271 21-308 15-301 (302)
433 PF07250 Glyoxal_oxid_N: Glyox 93.7 2.7 5.7E-05 33.4 11.8 143 132-276 49-206 (243)
434 PLN02153 epithiospecifier prot 93.6 4 8.6E-05 34.4 23.3 147 118-269 85-286 (341)
435 KOG1900 Nuclear pore complex, 93.5 2.7 5.8E-05 41.0 13.3 139 41-180 96-273 (1311)
436 KOG1916 Nuclear protein, conta 93.5 0.083 1.8E-06 48.6 3.5 117 25-142 183-328 (1283)
437 TIGR03547 muta_rot_YjhT mutatr 93.3 4.5 9.7E-05 34.2 22.6 53 118-170 63-128 (346)
438 COG5167 VID27 Protein involved 93.2 3.8 8.2E-05 35.9 12.6 129 166-298 485-622 (776)
439 PF07569 Hira: TUP1-like enhan 92.9 1.1 2.3E-05 35.1 8.7 65 72-137 18-95 (219)
440 PF08728 CRT10: CRT10; InterP 92.9 2.2 4.8E-05 39.3 11.5 113 23-136 101-245 (717)
441 PF14781 BBS2_N: Ciliary BBSom 92.5 2.7 5.9E-05 29.7 12.8 87 198-287 4-100 (136)
442 PF07250 Glyoxal_oxid_N: Glyox 91.7 5.7 0.00012 31.6 11.5 138 47-187 49-205 (243)
443 KOG2377 Uncharacterized conser 91.3 9.2 0.0002 33.2 20.5 153 26-181 26-187 (657)
444 TIGR03118 PEPCTERM_chp_1 conse 91.2 7.4 0.00016 31.9 23.4 210 27-237 27-294 (336)
445 TIGR03074 PQQ_membr_DH membran 91.1 14 0.0003 35.0 18.7 151 34-185 260-483 (764)
446 COG1520 FOG: WD40-like repeat 91.1 9 0.0002 32.7 22.1 196 78-276 70-277 (370)
447 PF12657 TFIIIC_delta: Transcr 91.0 2 4.2E-05 32.2 7.9 29 151-179 87-121 (173)
448 KOG1983 Tomosyn and related SN 90.0 19 0.00041 35.3 15.1 32 24-55 37-68 (993)
449 PRK14131 N-acetylneuraminic ac 89.6 12 0.00027 32.0 22.1 53 118-170 84-149 (376)
450 PF11715 Nup160: Nucleoporin N 89.3 3.1 6.7E-05 37.7 9.2 71 75-145 157-256 (547)
451 PLN00033 photosystem II stabil 89.3 14 0.0003 32.0 18.7 147 25-176 241-396 (398)
452 COG4590 ABC-type uncharacteriz 89.2 3.2 6.9E-05 35.8 8.3 157 65-225 221-389 (733)
453 PF13449 Phytase-like: Esteras 89.2 12 0.00026 31.3 16.3 104 65-169 20-166 (326)
454 COG3823 Glutamine cyclotransfe 89.1 8.7 0.00019 29.6 13.1 101 119-223 56-159 (262)
455 KOG2247 WD40 repeat-containing 88.9 0.053 1.2E-06 46.3 -2.1 143 27-173 39-182 (615)
456 TIGR03548 mutarot_permut cycli 88.9 13 0.00027 31.1 16.3 66 75-141 123-198 (323)
457 PF08728 CRT10: CRT10; InterP 88.8 20 0.00043 33.4 16.7 103 118-221 113-245 (717)
458 PF14727 PHTB1_N: PTHB1 N-term 88.6 16 0.00034 31.8 31.9 143 33-178 36-203 (418)
459 KOG2280 Vacuolar assembly/sort 88.0 22 0.00048 33.0 18.8 66 28-95 38-113 (829)
460 PRK13684 Ycf48-like protein; P 87.8 16 0.00034 30.9 24.5 152 107-265 172-329 (334)
461 TIGR02276 beta_rpt_yvtn 40-res 87.8 2.9 6.2E-05 22.4 6.1 31 32-62 1-32 (42)
462 PLN02153 epithiospecifier prot 87.7 16 0.00034 30.9 21.7 108 118-227 137-289 (341)
463 PF11715 Nup160: Nucleoporin N 87.7 5.3 0.00012 36.2 9.6 36 196-231 218-257 (547)
464 KOG4499 Ca2+-binding protein R 87.5 12 0.00027 29.4 17.7 131 66-201 110-262 (310)
465 PF14781 BBS2_N: Ciliary BBSom 87.3 8.4 0.00018 27.3 13.0 111 114-226 5-129 (136)
466 PF12657 TFIIIC_delta: Transcr 87.0 5.6 0.00012 29.8 7.9 31 108-138 86-122 (173)
467 PF07995 GSDH: Glucose / Sorbo 86.5 18 0.0004 30.4 23.5 54 248-301 270-327 (331)
468 TIGR02276 beta_rpt_yvtn 40-res 86.4 3.5 7.6E-05 22.0 6.0 31 117-147 1-32 (42)
469 COG3823 Glutamine cyclotransfe 86.0 14 0.0003 28.5 14.2 143 33-184 55-209 (262)
470 PLN02193 nitrile-specifier pro 86.0 24 0.00053 31.3 18.7 148 119-269 176-353 (470)
471 KOG4460 Nuclear pore complex, 85.9 5.9 0.00013 34.9 8.1 77 22-98 103-202 (741)
472 COG4590 ABC-type uncharacteriz 85.5 4.9 0.00011 34.7 7.4 163 16-181 214-388 (733)
473 PF03088 Str_synth: Strictosid 84.7 3.5 7.7E-05 26.9 5.0 56 253-309 31-86 (89)
474 PF07676 PD40: WD40-like Beta 84.5 4.3 9.4E-05 21.4 5.5 32 18-49 4-38 (39)
475 KOG2247 WD40 repeat-containing 84.4 0.15 3.2E-06 43.8 -1.8 145 67-216 37-182 (615)
476 PF10395 Utp8: Utp8 family; I 83.7 37 0.00079 31.4 15.9 153 22-178 129-304 (670)
477 PF07995 GSDH: Glucose / Sorbo 83.5 26 0.00056 29.5 23.5 102 25-128 4-134 (331)
478 COG5276 Uncharacterized conser 83.4 23 0.00051 28.9 23.3 153 65-225 87-244 (370)
479 COG4257 Vgb Streptogramin lyas 83.1 23 0.0005 28.7 16.5 188 67-268 64-263 (353)
480 PRK14131 N-acetylneuraminic ac 82.3 31 0.00067 29.6 21.1 12 130-141 190-201 (376)
481 TIGR03606 non_repeat_PQQ dehyd 82.3 35 0.00075 30.1 13.6 56 21-76 28-90 (454)
482 TIGR02171 Fb_sc_TIGR02171 Fibr 81.5 52 0.0011 31.6 17.9 79 44-122 329-413 (912)
483 PF10433 MMS1_N: Mono-function 81.5 40 0.00087 30.3 26.2 247 31-289 219-503 (504)
484 COG5290 IkappaB kinase complex 80.7 52 0.0011 31.1 12.5 92 111-205 250-349 (1243)
485 PF12768 Rax2: Cortical protei 79.5 33 0.00071 28.1 11.5 90 44-135 16-121 (281)
486 COG5290 IkappaB kinase complex 79.5 44 0.00094 31.5 11.2 92 69-161 251-348 (1243)
487 PF14761 HPS3_N: Hermansky-Pud 79.4 19 0.00042 27.9 8.0 51 77-128 29-80 (215)
488 COG5276 Uncharacterized conser 79.4 33 0.00072 28.1 25.4 184 34-223 96-286 (370)
489 PF03088 Str_synth: Strictosid 78.9 15 0.00033 24.0 7.7 43 125-168 33-75 (89)
490 PF14761 HPS3_N: Hermansky-Pud 78.8 13 0.00027 28.8 6.8 47 35-82 29-77 (215)
491 KOG1900 Nuclear pore complex, 77.8 63 0.0014 32.3 12.3 150 68-223 82-273 (1311)
492 PF14269 Arylsulfotran_2: Aryl 77.6 39 0.00085 28.0 14.3 71 24-94 145-220 (299)
493 PF13449 Phytase-like: Esteras 77.2 43 0.00092 28.1 17.2 103 108-211 20-165 (326)
494 PF01436 NHL: NHL repeat; Int 75.3 7.9 0.00017 18.8 3.9 24 26-49 5-28 (28)
495 TIGR03547 muta_rot_YjhT mutatr 75.2 49 0.0011 27.9 21.2 41 129-170 168-210 (346)
496 TIGR03606 non_repeat_PQQ dehyd 75.2 59 0.0013 28.8 13.5 53 109-161 31-90 (454)
497 KOG2063 Vacuolar assembly/sort 74.1 88 0.0019 30.3 17.9 66 29-95 21-97 (877)
498 KOG2727 Rab3 GTPase-activating 74.0 18 0.0004 34.4 7.6 244 31-275 93-414 (1244)
499 PRK13684 Ycf48-like protein; P 73.7 54 0.0012 27.6 30.4 153 150-310 173-330 (334)
500 smart00564 PQQ beta-propeller 73.6 9.6 0.00021 18.9 4.0 24 36-59 8-31 (33)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-55 Score=340.33 Aligned_cols=291 Identities=35% Similarity=0.663 Sum_probs=260.3
Q ss_pred eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd 92 (312)
++-..+.+|..+|.|++|+|+|..|+||+.|.++|+||..+..+....++|...|.+++|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeeecccccEEEEEEec-----CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe
Q 021459 93 ARTPFDCLKTLRGHSDFVFCVNFNP-----QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG 167 (312)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
..++.+....+.+|...|.+++|.| ...+|++++.||.|+|||+..++++..+.+|..+|+|+.|--+| ++++|
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEec
Confidence 9998888889999999999999976 56789999999999999999999999999999999999997554 89999
Q ss_pred eCCCeEEEEeCCCCceeeEcc-----------------------------------------------------------
Q 021459 168 SHDGTCKIWDAGEGACLKTLI----------------------------------------------------------- 188 (312)
Q Consensus 168 ~~d~~i~iwd~~~~~~~~~~~----------------------------------------------------------- 188 (312)
+.|++|++|+...|.+.+.+.
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999865543221110
Q ss_pred -------------------cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCC
Q 021459 189 -------------------DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG 249 (312)
Q Consensus 189 -------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (312)
..+...+..+.|+||++++|+++.|+.|++||-++|+.+..+.+|....+.+. +..+.
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva---wsaDs 421 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA---WSADS 421 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE---eccCc
Confidence 01122345578999999999999999999999999999999999998877664 34678
Q ss_pred cEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
++|++|+.|.++++||++++++...+.||.+.|.++.|+|||+.+++++ .|..+++|.
T Consensus 422 RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg--kdkv~~lw~ 479 (480)
T KOG0271|consen 422 RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG--KDKVLRLWR 479 (480)
T ss_pred cEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCC--CceEEEeec
Confidence 9999999999999999999999999999999999999999999999999 567999994
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-52 Score=330.20 Aligned_cols=285 Identities=29% Similarity=0.528 Sum_probs=263.9
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC--CCeEEEEcCCCeEEEEeCCCC
Q 021459 19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD--SHYICSASDDRTLRIWDARTP 96 (312)
Q Consensus 19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~wd~~~~ 96 (312)
.+-+.+|..+.||++++.|+||+.+|.++||+..+...+..+.+|...|.++.|+|. +..+++|+.||++++|+..+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 456789999999999999999999999999999999999999999999999999996 569999999999999999874
Q ss_pred ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEE
Q 021459 97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW 176 (312)
Q Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (312)
..+..+.+|...|..++|+|+|++|+|++.|.+-++||+++++.+...++|...|.+++|.|||.++++|+.|..-++|
T Consensus 252 -~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 252 -TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred -cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 5688899999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred eCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEee
Q 021459 177 DAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS 256 (312)
Q Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 256 (312)
|++++.++..+.+ +...+..+.|+|+|..||+|+.|++++|||++.-+.+.++..|.+.+..+ .+.+..|.+|+|++
T Consensus 331 DlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~V--k~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 331 DLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQV--KYSPQEGYFLVTAS 407 (459)
T ss_pred ecccCcEEEEecc-cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhhe--EecccCCeEEEEcc
Confidence 9999999987766 55667788999999999999999999999999988888888888765444 44545789999999
Q ss_pred cCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 257 EDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 257 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
.|+++++|...+..+++.+.||++.|.+++.+|+++.++++|.| +++++|-
T Consensus 408 yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~D--RT~KLW~ 458 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFD--RTIKLWR 458 (459)
T ss_pred cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccC--ceeeecc
Confidence 99999999999999999999999999999999999999999965 7999995
No 3
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-47 Score=289.36 Aligned_cols=293 Identities=27% Similarity=0.490 Sum_probs=264.8
Q ss_pred eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459 12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW 91 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w 91 (312)
.+.-++|.+|.+.|.++.|++|.++|++++.||.+.|||.-+....+.+.-....|...+|+|.|+++|+|+.|+...||
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy 124 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY 124 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence 45568999999999999999999999999999999999999988888888888899999999999999999999999999
Q ss_pred eCCCC--c---eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCEEE
Q 021459 92 DARTP--F---DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLIV 165 (312)
Q Consensus 92 d~~~~--~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 165 (312)
++.+. . +..+.+.+|.+.+.|+.|-+| +.++|++.|.++-+||+++++.+..+.+|...|.++.++| +++.|+
T Consensus 125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred ecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEE
Confidence 98753 1 334568899999999999874 6789999999999999999999999999999999999999 999999
Q ss_pred EeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEE
Q 021459 166 SGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFS 245 (312)
Q Consensus 166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
+|+.|+..++||+|.+.+..++.+ ++..+..++|.|+|.-+++|+.|++.++||++....+..++.. .....+....+
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~g-hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-~~~~gitSv~F 281 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFEG-HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-SIICGITSVAF 281 (343)
T ss_pred ecccccceeeeeccCcceeEeecc-cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC-cccCCceeEEE
Confidence 999999999999999999888865 4567889999999999999999999999999999999888743 33344555555
Q ss_pred ccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 246 VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 246 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
...|++|.+|..|..+.+||.-.++.+..+.+|+..|.+|..+|+|..++++|+| .++|||.
T Consensus 282 S~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWD--s~lriW~ 343 (343)
T KOG0286|consen 282 SKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWD--STLRIWA 343 (343)
T ss_pred cccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchh--HheeecC
Confidence 5679999999999999999999999999999999999999999999999999987 5999994
No 4
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.1e-46 Score=320.83 Aligned_cols=298 Identities=47% Similarity=0.832 Sum_probs=271.5
Q ss_pred ceeeeccc-ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459 14 HFKTLTAH-SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI 90 (312)
Q Consensus 14 ~~~~~~~h-~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 90 (312)
...++..| ...|+++.|+|+|+.+++++.++.+++|+....+ .+..+.+|...|.+++|+|+++++++++.|+++++
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred eeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 35556554 8899999999999999999999999999997777 67777899999999999999999999999999999
Q ss_pred EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD 170 (312)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
||+......++.+++|...|.+++|+|+++.+++|+.|++|++||++++++...+..|..+|++++|+++++++++++.|
T Consensus 230 wd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 99966567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCc--eeeEcccCCCC-cEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEcc
Q 021459 171 GTCKIWDAGEGA--CLKTLIDDKDP-AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT 247 (312)
Q Consensus 171 ~~i~iwd~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
+.|++||+.++. +...+...... .+..++|+|++.++++++.|+.+++||+..+.....+.+|.....|+......+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST 389 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC
Confidence 999999999998 44555555444 688999999999999999999999999999999999988877655665555567
Q ss_pred CCcEEEEeecCCeEEEEECCchheeecccCC-ccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 248 NGKYIVSGSEDNCVYVWDLQQKTMIQKLDGH-TDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
.+.++++|+.|+.|++||+.++..+..+.+| ...+..++++|..+.+++++.++|..+++|..+
T Consensus 390 ~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 8999999999999999999999999999999 889999999999999999999999999999864
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7e-44 Score=263.18 Aligned_cols=270 Identities=22% Similarity=0.456 Sum_probs=236.4
Q ss_pred CEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce-eeeeeecccccEEEE
Q 021459 35 TLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD-CLKTLRGHSDFVFCV 113 (312)
Q Consensus 35 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~-~~~~~~~~~~~v~~~ 113 (312)
-+|+++|.|.+||+|...+|.+...++-..+.|+.++..|+++.||+++ ...|++||+++... .+.++.+|...|.++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 4799999999999999999999998887778899999999999999886 45799999987654 678899999999999
Q ss_pred EEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCC
Q 021459 114 NFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP 193 (312)
Q Consensus 114 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 193 (312)
.|..+|+.+++|++||+++|||+++..+.+.++ |..+|+++..+|+...|++|..+|.|++||+++..+...+..+.+.
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 999999999999999999999999977666664 5689999999999999999999999999999999888888888888
Q ss_pred cEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE------EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459 194 AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF------LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ 267 (312)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 267 (312)
.+..+...|||.+|+.+...|..++|++-+... +..++.|... +..+...|++++||+++.|.+++||+..
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~---il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH---ILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce---EEEEEECCCCcEEEeecCCceEEEEecC
Confidence 899999999999999999999999999866432 3335555543 3334455889999999999999999998
Q ss_pred ch-heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 268 QK-TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 268 ~~-~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
+. .....+++|+.+++..+|+.++.+|+|||.| +++|+|++.
T Consensus 246 ~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd--~~~rlW~~~ 288 (311)
T KOG0315|consen 246 DFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD--HTARLWDLS 288 (311)
T ss_pred CceeeEEEeecCCceEEeeeeccCccEEEecCCC--Cceeecccc
Confidence 77 4456688999999999999999999999965 699999873
No 6
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.5e-44 Score=260.56 Aligned_cols=289 Identities=32% Similarity=0.561 Sum_probs=258.1
Q ss_pred ceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459 11 PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI 90 (312)
Q Consensus 11 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 90 (312)
|.+..+.+..|.++|.+++|+-+|++.+|++.|++|++|+...+.+++.+.+|...|..++.+.|...+++|+.|+.+.+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC--eEEEEeeecCcCeEEEEEccCCCEEEEee
Q 021459 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG--KCTRVIRAHSMPVTSVHFNRDGSLIVSGS 168 (312)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
||++++ +..+.+.+|.+.|..++|+.+...+++|+.|.++++||.++. ++++.+......|.++..+ +..+++|+
T Consensus 86 wDV~TG-kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 86 WDVNTG-KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred EEcccC-eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence 999996 678889999999999999999999999999999999999764 5566666666778888774 56899999
Q ss_pred CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC
Q 021459 169 HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN 248 (312)
Q Consensus 169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
.||+++.||++.|+.....+ ..++.++.++++++.+++++.|+++++.|-.+|+.++.+.+|.+..+.+.++.. ..
T Consensus 163 ~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~-qs 238 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN-QS 238 (307)
T ss_pred cCCcEEEEEeecceeehhhc---CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec-cc
Confidence 99999999999988765443 456888999999999999999999999999999999999999998888887765 45
Q ss_pred CcEEEEeecCCeEEEEECCchheeecccCCccc-eEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDS-VISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
..++++|++||.|.+||+.+...+..++.+... |.++++||....|++++. ..+..|.
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~---~~~~~~~ 297 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG---HGDLFWY 297 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC---Cceecee
Confidence 678999999999999999999999999988877 899999999988888863 3566664
No 7
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-44 Score=283.91 Aligned_cols=296 Identities=29% Similarity=0.490 Sum_probs=252.5
Q ss_pred ceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC---cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459 11 PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS---LALVHRFVGHSEGISDLAWSSDSHYICSASDDRT 87 (312)
Q Consensus 11 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 87 (312)
|.+..+.+..|++.|--+.||++|++||+++.|.+..+|.+.. .++.+++.+|..+|.-+.|+||.++|++|+.|..
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~ 292 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV 292 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence 4556678899999999999999999999999999999997654 4567889999999999999999999999999999
Q ss_pred EEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecC-cCeEEEEEccCCCEEEE
Q 021459 88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHS-MPVTSVHFNRDGSLIVS 166 (312)
Q Consensus 88 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~ 166 (312)
+.+||+.++........++...+.+++|.||+..+++|+.|+.|..||+... .....+... -.|.+++.++||+++++
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~ 371 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLL 371 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEE
Confidence 9999999864333233345578899999999999999999999999998744 333333322 34899999999999999
Q ss_pred eeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459 167 GSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246 (312)
Q Consensus 167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
...|..|++++..+..... +. .....+.....+.+++++++--.+..+++||+.....++.+.+|....+.+.++|-.
T Consensus 372 v~~d~~i~l~~~e~~~dr~-li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg 449 (519)
T KOG0293|consen 372 VTVDKKIRLYNREARVDRG-LI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGG 449 (519)
T ss_pred Eecccceeeechhhhhhhc-cc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCC
Confidence 9999999999976543332 22 233457788899999999999999999999999888888999999888999999988
Q ss_pred cCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCC-ceEEEeeecCCeeEEEEeec
Q 021459 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTE-NKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 247 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~~~~~dgd~~v~iw~~~ 311 (312)
.+..++++|++|+.|+||+..++.++..+.||...|++|+|+|.. ..+|+||.| ++||||-++
T Consensus 450 ~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD--gtIRIWg~~ 513 (519)
T KOG0293|consen 450 GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD--GTIRIWGPS 513 (519)
T ss_pred CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC--CeEEEecCC
Confidence 888999999999999999999999999999999999999999965 567888744 699999875
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3e-45 Score=288.68 Aligned_cols=249 Identities=31% Similarity=0.544 Sum_probs=228.6
Q ss_pred eeceeeecccccceEEEEECCC--CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEE
Q 021459 12 YRHFKTLTAHSRAVSCVKFSND--GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLR 89 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~~--~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~ 89 (312)
.+...+|.+|+..|.++.|+|. +..+|||+.||++++|++.+..++..+.+|...|..++|+|+|++|++++.|.+-+
T Consensus 207 ~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWR 286 (459)
T KOG0272|consen 207 CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWR 286 (459)
T ss_pred cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchh
Confidence 3667889999999999999996 56899999999999999999899999999999999999999999999999999999
Q ss_pred EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459 90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH 169 (312)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
+||+++..+ +...+||...|.+++|+|||.+++||+.|..=+|||+++++++..+.+|..+|.+++|+|+|..+++|+.
T Consensus 287 lWD~~tk~E-lL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~ 365 (459)
T KOG0272|consen 287 LWDLETKSE-LLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS 365 (459)
T ss_pred hcccccchh-hHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC
Confidence 999998654 4456799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCCceeeEcccCCCCcEEEEEECC-CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC
Q 021459 170 DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP-NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN 248 (312)
Q Consensus 170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
|++++|||++....+..+. .+...++.++++| .|.+|++++.|+++++|.-++..+++.+.+|..++.++.. .++
T Consensus 366 Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Di---s~d 441 (459)
T KOG0272|consen 366 DNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDI---SPD 441 (459)
T ss_pred CCcEEEeeecccccceecc-cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEe---ccC
Confidence 9999999999887776664 4556788889998 7889999999999999999999999999999998665544 478
Q ss_pred CcEEEEeecCCeEEEEE
Q 021459 249 GKYIVSGSEDNCVYVWD 265 (312)
Q Consensus 249 ~~~l~~~~~dg~i~iwd 265 (312)
+.++++++.|.++++|.
T Consensus 442 ~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 442 SQAIATSSFDRTIKLWR 458 (459)
T ss_pred CceEEEeccCceeeecc
Confidence 99999999999999995
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-42 Score=258.85 Aligned_cols=290 Identities=29% Similarity=0.445 Sum_probs=239.5
Q ss_pred eceeeecccccceEEEEECCC-CCEEEEEeCCCeEEEEeCC-----CcceEEEeeeccCCEEEEEEccCCCeEEEEcCCC
Q 021459 13 RHFKTLTAHSRAVSCVKFSND-GTLLASASLDKTVIIWSAS-----SLALVHRFVGHSEGISDLAWSSDSHYICSASDDR 86 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 86 (312)
....++.+|++.|+.++..+. .+.+++++.|.++.+|++. .+..+.++.||...|..+..+++|++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 345678999999999999886 4588999999999999765 3667889999999999999999999999999999
Q ss_pred eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee-cCcCeEEEEEccC--CCE
Q 021459 87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA-HSMPVTSVHFNRD--GSL 163 (312)
Q Consensus 87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~~~~--~~~ 163 (312)
.+++||+.++ +..+.+.+|...|.+++|++|+..+++|+.|.+|++|++..+........ +...|.|+.|+|+ ..+
T Consensus 86 ~lrlWDl~~g-~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 86 TLRLWDLATG-ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred eEEEEEecCC-cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 9999999987 66788899999999999999999999999999999999886654433332 2678999999998 679
Q ss_pred EEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEE
Q 021459 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST 243 (312)
Q Consensus 164 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
+++++.|+++++||+++-+....+.+ +...+..+.++|||..+++|+.||.+.+||++.++.+..+... . .+...
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-~---~v~sl 239 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIG-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-D---IVNSL 239 (315)
T ss_pred EEEccCCceEEEEccCCcchhhcccc-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-C---eEeeE
Confidence 99999999999999998877777665 4556788899999999999999999999999999987665432 2 24444
Q ss_pred EEccCCcEEEEeecCCeEEEEECCchheeecccC----C-----ccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG----H-----TDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----h-----~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
.+.|+.-.|+.+ .+-.|+|||+.++..+..+.. . .-...+++|+++|+.|.++-. |+.||+|++-
T Consensus 240 ~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t--d~~irv~qv~ 313 (315)
T KOG0279|consen 240 CFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT--DNVIRVWQVA 313 (315)
T ss_pred EecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec--CCcEEEEEee
Confidence 444655455544 455599999998877766532 1 234677899999999998874 4689999874
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-43 Score=274.84 Aligned_cols=290 Identities=31% Similarity=0.557 Sum_probs=260.0
Q ss_pred ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459 14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA 93 (312)
Q Consensus 14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~ 93 (312)
....+.+|..+|+.+.|+|+..++++++.|++|++||..++++...+++|..+|.+++|+..|++|++++.|-.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 34457789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459 94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC 173 (312)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 173 (312)
.+-.++++.+.+|...|.++.|-|.|+++++++.|.+|+.||+.++-++.++.+|...|..+..+.||.++++++.|.++
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL 259 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceE
Confidence 87677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceeeEcccCCCCcEEEEEECC---------------CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCcee
Q 021459 174 KIWDAGEGACLKTLIDDKDPAVSFAKFSP---------------NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKY 238 (312)
Q Consensus 174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 238 (312)
++|-+.++++...+. .+.-.+.+++|.| .++++.+++.|++|++||+.++.++..+.+|.+...
T Consensus 260 ~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 260 RVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred EEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 999998886544332 2333444444443 235899999999999999999999999999987543
Q ss_pred EEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
. ....|.|++|+++.+|+++++||+++.+++..+..|+.-|++++|+.+..++++|+.| .++++|.
T Consensus 339 ~---~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd--qt~KvwE 404 (406)
T KOG0295|consen 339 G---VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD--QTVKVWE 404 (406)
T ss_pred e---eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccc--ceeeeee
Confidence 3 3345789999999999999999999999999999999999999999999999999976 6899995
No 11
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.2e-45 Score=285.78 Aligned_cols=284 Identities=27% Similarity=0.545 Sum_probs=246.5
Q ss_pred ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeee
Q 021459 22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLK 101 (312)
Q Consensus 22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~ 101 (312)
+.+|..+.|.|+|+.|++|+..|.+.+|+.....-...++.|.++|.++.|++++.++++|+.+|.|++|+... ..++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhH
Confidence 56899999999999999999999999999865544344578999999999999999999999999999998764 2344
Q ss_pred eeecc-cccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459 102 TLRGH-SDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE 180 (312)
Q Consensus 102 ~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 180 (312)
...+| ...|.+++|+|....+++++.||+|+|||....+....+.+|.-.|+++.|+|...++++++.|..|++||.++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 45554 48999999999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred CceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCe
Q 021459 181 GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC 260 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 260 (312)
+.++.++.. +...+..+.|.|++++|++++.|..+++||++.-+.+..+.+|.....++ .+.+-...+|++|+.||.
T Consensus 254 g~cl~tlh~-HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~--~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 254 GSCLATLHG-HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSL--TWHPLNESLFTSGGSDGS 330 (464)
T ss_pred cchhhhhhh-ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheee--ccccccccceeeccCCCc
Confidence 999988765 45567788999999999999999999999999777788888887765444 455567789999999999
Q ss_pred EEEEECCchheeecc-cCCccceEEEEEcCCCceEEEeeecCCeeEEEEeecC
Q 021459 261 VYVWDLQQKTMIQKL-DGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQDR 312 (312)
Q Consensus 261 i~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~~ 312 (312)
|..|.+...+++..+ .+|...|++++|||-|..|++|+ .|.++|+|.-.|
T Consensus 331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgs--nd~t~rfw~r~r 381 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGS--NDRTVRFWTRNR 381 (464)
T ss_pred eEEEeccccccccCCCcccccceeeeeccccceeEeecC--CCcceeeeccCC
Confidence 999999855554444 47999999999999999999988 557999997554
No 12
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.5e-44 Score=289.15 Aligned_cols=295 Identities=27% Similarity=0.547 Sum_probs=258.6
Q ss_pred CceeceeeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCC-cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459 10 KPYRHFKTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASS-LALVHRFVGHSEGISDLAWSSDSHYICSASDDRT 87 (312)
Q Consensus 10 ~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 87 (312)
-|-+...++.+|++.|+++.|.| .+.+|++++.|+.|+||++.. +.++..+.+|..+|.+++|+++|..+++++.|+.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 35567788999999999999999 899999999999999999887 7889999999999999999999999999999999
Q ss_pred EEEEeCCCCceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459 88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS 166 (312)
Q Consensus 88 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
+++||++++ +++..+. ......|+.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-.+|..+.|-++|+.+++
T Consensus 282 lKlwDtETG-~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFis 359 (503)
T KOG0282|consen 282 LKLWDTETG-QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFIS 359 (503)
T ss_pred eeeeccccc-eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEee
Confidence 999999997 4444443 23567899999998 89999999999999999999988888889999999999999999999
Q ss_pred eeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc---EEEEEEccCCceeEEEEE
Q 021459 167 GSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK---FLKIYTGHTNKKYCITST 243 (312)
Q Consensus 167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~ 243 (312)
.+.|+.+++|+.+.+..++.+.....-.+.++..+|+++++++-+.|+.|.+|.....- ..+.+.+|....+.+.+.
T Consensus 360 sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 360 SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 99999999999988776665544444446677899999999999999999999864432 235677887777777776
Q ss_pred EEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCC-ceEEEeeecCCeeEEEEe
Q 021459 244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTE-NKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~~~~~dgd~~v~iw~ 309 (312)
|+ ++|++|++|..||.+.+||.++-.++.++++|.+++..+.|||.. ..+|++|.|| .|++|+
T Consensus 440 fS-pDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G--~Ikiwd 503 (503)
T KOG0282|consen 440 FS-PDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDG--LIKIWD 503 (503)
T ss_pred Ec-CCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCc--eeEecC
Confidence 65 789999999999999999999999999999999999999999976 5799999775 899996
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.9e-43 Score=269.42 Aligned_cols=296 Identities=24% Similarity=0.538 Sum_probs=261.2
Q ss_pred CCC-CceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC
Q 021459 7 PPY-KPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD 85 (312)
Q Consensus 7 ~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 85 (312)
|+| -|++..+.+.+|.+=|.|+++.|...+++||+.|++|+|||+.++++...+.+|-..|..+++++-..||++++.|
T Consensus 135 PeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 135 PEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred ccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCC
Confidence 444 3678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEE
Q 021459 86 RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIV 165 (312)
Q Consensus 86 ~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
+.|+.||++. .+.++.+.||-+.|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...++
T Consensus 215 k~VKCwDLe~-nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 215 KQVKCWDLEY-NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred CeeEEEechh-hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence 9999999987 477888999999999999999999999999999999999999999999999999999999999888999
Q ss_pred EeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEE
Q 021459 166 SGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFS 245 (312)
Q Consensus 166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
+|+.|++|++||++.++....+. ++...+..++.+|....+|+++.| .|+-|++..+..+..+.+|......+..
T Consensus 294 t~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~--- 368 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSV--- 368 (460)
T ss_pred EecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeee---
Confidence 99999999999999998776654 455668888899999999988877 6999999999988888877765444432
Q ss_pred ccCCcEEEEeecCCeEEEEECCchheeeccc-----C---CccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 246 VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD-----G---HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 246 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~---h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
....++++|+++|.+.+||.+++...+..+ | .+..|.+.+|...+..|+++..| .+|++|..|
T Consensus 369 -nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ead--KtIk~~keD 439 (460)
T KOG0285|consen 369 -NSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEAD--KTIKMYKED 439 (460)
T ss_pred -ccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCC--cceEEEecc
Confidence 345689999999999999998876655442 1 24578999999999999999955 699999875
No 14
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.3e-42 Score=259.13 Aligned_cols=293 Identities=29% Similarity=0.524 Sum_probs=249.4
Q ss_pred eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCC-CcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459 12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSAS-SLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI 90 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 90 (312)
..++..+.+|++.|..++|+|+|..|||||.|..|.+|+.. .-+-...+++|.++|..+.|.+|+..|++++.|++++.
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 45556778999999999999999999999999999999954 33445667899999999999999999999999999999
Q ss_pred EeCCCCceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH 169 (312)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
||++++ +..+..++|.+.+.++.-..-| ..+.+++.|+++++||+++...++.++. +.+++++.|..++..+.+|+-
T Consensus 117 wD~~tG-~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETG-KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred Eecccc-eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccc
Confidence 999996 6678889999999988733333 4677889999999999998887776643 457899999999999999999
Q ss_pred CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC----CcEEEEEEccCC--ceeEEEEE
Q 021459 170 DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA----GKFLKIYTGHTN--KKYCITST 243 (312)
Q Consensus 170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~--~~~~~~~~ 243 (312)
|+.|++||++.+.....+.++.+ .+..+..+++|.++++-+.|.++++||.+. .+++++++++.. ....+.+
T Consensus 195 dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~c- 272 (338)
T KOG0265|consen 195 DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKC- 272 (338)
T ss_pred cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhccee-
Confidence 99999999999988887766554 467778999999999999999999999864 456788877543 2333443
Q ss_pred EEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
.+.+++..+.+|+.|..+++||......+..++||.+.|++++|||..+.+.+++.| .+|.+-++
T Consensus 273 swsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd--k~i~lgei 337 (338)
T KOG0265|consen 273 SWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD--KTIYLGEI 337 (338)
T ss_pred eccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccC--ceeEeecc
Confidence 455789999999999999999999999999999999999999999999999999965 57877554
No 15
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.7e-40 Score=246.93 Aligned_cols=289 Identities=29% Similarity=0.484 Sum_probs=233.2
Q ss_pred eeceeeecccccceEEEEECCC-CCEEEEEeCCCeEEEEeCCC---cceEEEe-eeccCCEEEEEEccCCCeEEEEcCCC
Q 021459 12 YRHFKTLTAHSRAVSCVKFSND-GTLLASASLDKTVIIWSASS---LALVHRF-VGHSEGISDLAWSSDSHYICSASDDR 86 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~ 86 (312)
+..++++++|++.+-.++|+|. |..|||+|.|+.||+|+... ..+...+ .+|+..|.+++|+|.|++|+++|.|.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence 4456788999999999999998 89999999999999999884 2333222 47999999999999999999999999
Q ss_pred eEEEEeCC-CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC---eEEEEeeecCcCeEEEEEccCCC
Q 021459 87 TLRIWDAR-TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG---KCTRVIRAHSMPVTSVHFNRDGS 162 (312)
Q Consensus 87 ~v~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~ 162 (312)
++.||.-. ...+++..++||...|.|++|+++|++|++++.|++|-+|.+..+ .+...++.|...|..+.|+|...
T Consensus 84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred eEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 99999654 345788999999999999999999999999999999999998744 56778899999999999999999
Q ss_pred EEEEeeCCCeEEEEeCC-C--CceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeE
Q 021459 163 LIVSGSHDGTCKIWDAG-E--GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC 239 (312)
Q Consensus 163 ~l~~~~~d~~i~iwd~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 239 (312)
+|++++.|++|++|+-. . -.+..++.+ +...+..+.|++.|..|++++.|++++||-+...-. ..|....+.
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g-~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~ 238 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDG-HENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYD 238 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecC-ccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEe
Confidence 99999999999999765 2 234555543 444688889999999999999999999998652211 112233333
Q ss_pred EEEEEEccCCcEEEEeecCCeEEEEECCch------hee-ecccCCccceEEEEEcCC-CceEEEeeecCCeeEEEEeec
Q 021459 240 ITSTFSVTNGKYIVSGSEDNCVYVWDLQQK------TMI-QKLDGHTDSVISVTCHPT-ENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~-~~~~~h~~~v~~l~~~p~-~~~l~~~~~dgd~~v~iw~~~ 311 (312)
+. .. ...|++++.|+.|++|..... +++ ..-..|...|++|+|.|. .++|+++|.| +.|++|.+.
T Consensus 239 v~---W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DD--G~v~~W~l~ 311 (312)
T KOG0645|consen 239 VP---WD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDD--GIVNFWELE 311 (312)
T ss_pred ee---ec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCC--ceEEEEEec
Confidence 32 11 458999999999999976532 112 233568899999999995 6788888865 699999875
Q ss_pred C
Q 021459 312 R 312 (312)
Q Consensus 312 ~ 312 (312)
+
T Consensus 312 ~ 312 (312)
T KOG0645|consen 312 I 312 (312)
T ss_pred C
Confidence 3
No 16
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-42 Score=270.62 Aligned_cols=248 Identities=32% Similarity=0.627 Sum_probs=215.3
Q ss_pred EEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC
Q 021459 58 HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK 137 (312)
Q Consensus 58 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~ 137 (312)
..+.+|.++|.++.|+|+|..|++|+.|.++++||+.+. .+..+.++|...|.|++|+||++.+++|+.||+|.+||.+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te-Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE-TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC-CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 456789999999999999999999999999999999874 5678899999999999999999999999999999999999
Q ss_pred CCeEE-EEeeecCcCeEEEEEcc-----CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe
Q 021459 138 TGKCT-RVIRAHSMPVTSVHFNR-----DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT 211 (312)
Q Consensus 138 ~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
+|+.+ ..+.+|...|++++|.| ..++|++++.||.++|||+..++++..+.+ +...+++++|.-+| ++++|+
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg-HT~~VTCvrwGG~g-liySgS 265 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG-HTASVTCVRWGGEG-LIYSGS 265 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc-CccceEEEEEcCCc-eEEecC
Confidence 88765 57889999999999976 567999999999999999999988887755 55678899887654 899999
Q ss_pred cCCeEEEEEcCCCcEEEEEEccCCceeEEEEE---------EE------------------------ccCCcEEEEeecC
Q 021459 212 LDSTLKLWNYSAGKFLKIYTGHTNKKYCITST---------FS------------------------VTNGKYIVSGSED 258 (312)
Q Consensus 212 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---------~~------------------------~~~~~~l~~~~~d 258 (312)
.|++|++|+...|.+.+.+.+|....+.+... |. ...++.|++|++|
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 99999999999999888888887655444322 10 1124579999999
Q ss_pred CeEEEEECCc-hheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 259 NCVYVWDLQQ-KTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 259 g~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
.++.+|+... .+++.++.+|+.-|+.+.|+||+.++|++|+| .+||+|+-
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD--kSVkLW~g 396 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD--KSVKLWDG 396 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecc--cceeeeeC
Confidence 9999999864 45788899999999999999999999999988 49999985
No 17
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.9e-41 Score=260.45 Aligned_cols=290 Identities=19% Similarity=0.392 Sum_probs=244.3
Q ss_pred eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR 94 (312)
Q Consensus 15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~ 94 (312)
..+|..|+++|.+++.+|+.++++|||.|..-.+|+..++.....+.+|++.|+++.|+.+|.+||+|..+|.|++|+..
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459 95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK 174 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
++..... +...-..+.-+.|+|.+..|++|+.||.+-+|.+.++...+.+.+|..++++-.|.|+|+.++++..||+|+
T Consensus 137 tg~~~~~-~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 137 TGGEQWK-LDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred cCceEEE-eecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 8755433 333445677899999999999999999999999999888889999999999999999999999999999999
Q ss_pred EEeCCCCceeeEcccCC---------------------CC--------------------------------cEEEEEEC
Q 021459 175 IWDAGEGACLKTLIDDK---------------------DP--------------------------------AVSFAKFS 201 (312)
Q Consensus 175 iwd~~~~~~~~~~~~~~---------------------~~--------------------------------~~~~~~~~ 201 (312)
+||+.+++.+..+.... +. .+..+.++
T Consensus 216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s 295 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS 295 (399)
T ss_pred EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence 99999987765543110 00 01112233
Q ss_pred CCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccc
Q 021459 202 PNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDS 281 (312)
Q Consensus 202 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~ 281 (312)
..-.+.|+|+.||+|.|||+...+..+.+. |... .+...|. + ..+|++++.||.|+.||.+++++...+.||+..
T Consensus 296 s~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~--V~~l~w~-~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 296 SKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDG--VTKLKWL-N-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG 370 (399)
T ss_pred cccchhhcccccceEEEEecccchhheecc-CCCc--eEEEEEc-C-cchheeeccCceEEeeeccccceEEEEecCchh
Confidence 334567889999999999998777666554 3333 2333333 3 679999999999999999999999999999999
Q ss_pred eEEEEEcCCCceEEEeeecCCeeEEEEeecC
Q 021459 282 VISVTCHPTENKIASAGLDGDRTVRVWVQDR 312 (312)
Q Consensus 282 v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~~ 312 (312)
|.+++++|+.++++|+| +|++.++|.+.|
T Consensus 371 Il~f~ls~~~~~vvT~s--~D~~a~VF~v~~ 399 (399)
T KOG0296|consen 371 ILDFALSPQKRLVVTVS--DDNTALVFEVPN 399 (399)
T ss_pred eeEEEEcCCCcEEEEec--CCCeEEEEecCC
Confidence 99999999999999999 557899998653
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-41 Score=250.61 Aligned_cols=250 Identities=30% Similarity=0.574 Sum_probs=214.0
Q ss_pred ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459 14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA 93 (312)
Q Consensus 14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~ 93 (312)
..+.+.||+..|+.+..++||++.++++.|+++|+||+.+++....+.+|...|.+++|++|.+.+++|+.|+++++|++
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt 134 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT 134 (315)
T ss_pred eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceeeeeeecccccEEEEEEecC--CCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459 94 RTPFDCLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG 171 (312)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
............+.+.|.|++|+|. ..++++++.|++|++||+++.+....+.+|...++.++++|||.++++|+.||
T Consensus 135 ~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 135 LGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred cccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCc
Confidence 7643222222234789999999997 67899999999999999999998889999999999999999999999999999
Q ss_pred eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc-------CCceeEEEEEE
Q 021459 172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH-------TNKKYCITSTF 244 (312)
Q Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~ 244 (312)
.+.+||+++++.+..+ +....+..++|+|+..+|+.+. +..|+|||+.++..+..+... .....|+...+
T Consensus 215 ~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaw 291 (315)
T KOG0279|consen 215 EAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAW 291 (315)
T ss_pred eEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEE
Confidence 9999999999887665 3456788899999977666654 456999999988776544321 22346666655
Q ss_pred EccCCcEEEEeecCCeEEEEECC
Q 021459 245 SVTNGKYIVSGSEDNCVYVWDLQ 267 (312)
Q Consensus 245 ~~~~~~~l~~~~~dg~i~iwd~~ 267 (312)
+ .+|..|+.|-.|+.|++|.+.
T Consensus 292 s-~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 292 S-ADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred c-CCCcEEEeeecCCcEEEEEee
Confidence 4 679999999999999999864
No 19
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.3e-39 Score=265.48 Aligned_cols=287 Identities=40% Similarity=0.742 Sum_probs=249.6
Q ss_pred eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART 95 (312)
Q Consensus 16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~ 95 (312)
+++.+|.++|++++|+|++++|++++.||.+++|+..+.+....+..|...+..+.|+|+++++++++.++.+++||+..
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46778999999999999999999999999999999998888888888999999999999999999999999999999986
Q ss_pred CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEE
Q 021459 96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKI 175 (312)
Q Consensus 96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (312)
. +.+..+..|...+.++.|+++++++++++.++.|.+||+++++....+..|...+.++.|+|++.++++++.++.+++
T Consensus 83 ~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 83 G-ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred c-cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 4 445667788889999999999888888888999999999988888888888889999999999989888888999999
Q ss_pred EeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe
Q 021459 176 WDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG 255 (312)
Q Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 255 (312)
||+++++....+. .+...+..+.++|+++.+++++.++.|++||++.++.+..+..+...... ....+++.+++++
T Consensus 162 ~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~ 237 (289)
T cd00200 162 WDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS---VAFSPDGYLLASG 237 (289)
T ss_pred EEccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEE---EEEcCCCcEEEEE
Confidence 9998877666554 34446778889999999999999999999999988887777666554333 3334567888888
Q ss_pred ecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 256 SEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
+.||.|++||+.+......+..|...+.+++|+|+++.|++++.| +.+++|+
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD--GTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCC--CeEEecC
Confidence 889999999999888888888999999999999999999999965 5899995
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.8e-41 Score=286.26 Aligned_cols=287 Identities=29% Similarity=0.555 Sum_probs=242.4
Q ss_pred CCCCceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCC
Q 021459 7 PPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDR 86 (312)
Q Consensus 7 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 86 (312)
++..|-.++.++..-...++|..|++|+.+||.|-.|-.|++|.+...++. .++. ..+ -..+=+.+.|-
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~-~lk~-------~~~---l~~~d~~sad~ 431 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLK-KLKD-------ASD---LSNIDTESADV 431 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhc-cccc-------hhh---hccccccccch
Confidence 334455667777777889999999999999999999999999998865432 2221 111 11122334444
Q ss_pred eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459 87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS 166 (312)
Q Consensus 87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
.+.+.|.... ...+.+.||.++|..++|+|+.++|++++.|+++++|.+.+..+...+++|..||+.+.|+|.|-+|++
T Consensus 432 ~~~~~D~~~~-~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFat 510 (707)
T KOG0263|consen 432 DVDMLDDDSS-GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFAT 510 (707)
T ss_pred hhhhccccCC-ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEe
Confidence 4666666554 335568899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459 167 GSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246 (312)
Q Consensus 167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
++.|++-++|.....+..+.+.+ +-..+.++.|+|+..++++|+.|.+|++||..+|..++++.+|.....++ ...
T Consensus 511 as~D~tArLWs~d~~~PlRifag-hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al---~~S 586 (707)
T KOG0263|consen 511 ASHDQTARLWSTDHNKPLRIFAG-HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTAL---AFS 586 (707)
T ss_pred cCCCceeeeeecccCCchhhhcc-cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEE---EEc
Confidence 99999999999888777766654 45668888999999999999999999999999999999999998875444 444
Q ss_pred cCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 247 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
+.|++|++|++||.|.+||+.++.++..+.+|.+.|.+|.|+.+|..||++| +|++|++||+.
T Consensus 587 p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg--~DnsV~lWD~~ 649 (707)
T KOG0263|consen 587 PCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG--ADNSVRLWDLT 649 (707)
T ss_pred CCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC--CCCeEEEEEch
Confidence 7899999999999999999999999999999999999999999999999999 66899999873
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.3e-39 Score=259.96 Aligned_cols=295 Identities=25% Similarity=0.424 Sum_probs=239.6
Q ss_pred CceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee---eccCCEEEEEEccCCCeEEEEcCCC
Q 021459 10 KPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV---GHSEGISDLAWSSDSHYICSASDDR 86 (312)
Q Consensus 10 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~ 86 (312)
.|+++-.+++.|.+-|+|++|+|||.++||++.||++.+||-.+++.+..+. +|++.|..++|+||++.+++++.|.
T Consensus 178 PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 178 PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence 4567777889999999999999999999999999999999999999998887 8999999999999999999999999
Q ss_pred eEEEEeCCCCceeeeeeeccc---ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCE
Q 021459 87 TLRIWDARTPFDCLKTLRGHS---DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163 (312)
Q Consensus 87 ~v~~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (312)
++++||+.+. .+++++.-.. +.-..+-|- ...|++.+.+|+|.+++......+..+.+|...|+++..+|++++
T Consensus 258 t~KIWdVs~~-slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 258 TIKIWDVSTN-SLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred eEEEEEeecc-ceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence 9999999875 4555443211 222233343 568999999999999999998888999999999999999999999
Q ss_pred EEEeeCCCeEEEEeCCCCcee-----------eEcccC------------------------------------------
Q 021459 164 IVSGSHDGTCKIWDAGEGACL-----------KTLIDD------------------------------------------ 190 (312)
Q Consensus 164 l~~~~~d~~i~iwd~~~~~~~-----------~~~~~~------------------------------------------ 190 (312)
|++|+.||.|.-||..++..- ..+...
T Consensus 335 i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL 414 (603)
T ss_pred EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence 999999999999997654321 000000
Q ss_pred C---------------------------CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEE--EEEEccCCceeEEE
Q 021459 191 K---------------------------DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFL--KIYTGHTNKKYCIT 241 (312)
Q Consensus 191 ~---------------------------~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~ 241 (312)
. ......++++|++..+++|+.|+.|++|.+..++.. .....|..+. +
T Consensus 415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~i---T 491 (603)
T KOG0318|consen 415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAI---T 491 (603)
T ss_pred CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCc---e
Confidence 0 001123568999999999999999999999876532 2344566554 3
Q ss_pred EEEEccCCcEEEEeecCCeEEEEECCchheee-cccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeecC
Q 021459 242 STFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ-KLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQDR 312 (312)
Q Consensus 242 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~~ 312 (312)
.....|++.+||+|...+.+.+||..+.+... .+.-|+..|++|+|+|++..+||||.| .+|.||.++|
T Consensus 492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD--t~Viiysv~k 561 (603)
T KOG0318|consen 492 DVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLD--TNVIIYSVKK 561 (603)
T ss_pred EEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecccc--ceEEEEEccC
Confidence 44556899999999999999999998876633 334499999999999999999999976 7999999876
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-38 Score=234.68 Aligned_cols=270 Identities=24% Similarity=0.484 Sum_probs=225.7
Q ss_pred eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI 90 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 90 (312)
.+.++++..+..|+.|...|+++.||+++. ..||+||+.+.+ ++..+.+|+..|.++.|..+|+.+++|++||+++|
T Consensus 31 ~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kI 109 (311)
T KOG0315|consen 31 ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKI 109 (311)
T ss_pred eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEE
Confidence 556777888889999999999999999877 589999998765 58889999999999999999999999999999999
Q ss_pred EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee-ecCcCeEEEEEccCCCEEEEeeC
Q 021459 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR-AHSMPVTSVHFNRDGSLIVSGSH 169 (312)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
||++.. .+.+ ...|..+|.++..+|+...|++|..+|.|++||+.+..+...+. ....++.++...|||.+++.+..
T Consensus 110 WdlR~~-~~qR-~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn 187 (311)
T KOG0315|consen 110 WDLRSL-SCQR-NYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN 187 (311)
T ss_pred EeccCc-ccch-hccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC
Confidence 999873 4433 44577999999999999999999999999999999887665543 34567999999999999999999
Q ss_pred CCeEEEEeCCCCceeeEc-----ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC-cEEEEEEccCCceeEEEEE
Q 021459 170 DGTCKIWDAGEGACLKTL-----IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG-KFLKIYTGHTNKKYCITST 243 (312)
Q Consensus 170 d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~ 243 (312)
.|.+.+|++...+....+ +..+...+..+.+||++++|++++.|.+++||+.++- +....+++|..- ...+.
T Consensus 188 kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rW--vWdc~ 265 (311)
T KOG0315|consen 188 KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRW--VWDCA 265 (311)
T ss_pred CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCce--EEeee
Confidence 999999998765432222 2234555667789999999999999999999998776 334556666543 34444
Q ss_pred EEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEc
Q 021459 244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCH 288 (312)
Q Consensus 244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~ 288 (312)
|+ .++++|+||+.|+.+++|++..++.+...++|.....|++.+
T Consensus 266 FS-~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 266 FS-ADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ec-cCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 44 679999999999999999999999999999999988888764
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-38 Score=253.10 Aligned_cols=278 Identities=28% Similarity=0.512 Sum_probs=240.2
Q ss_pred ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeee
Q 021459 22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLK 101 (312)
Q Consensus 22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~ 101 (312)
++.|++|+|+.+|.+||+|+.||.+++|+. ++.++..+..|+++|.++.|+..|++|++++.|+++.+||..++ ...+
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g-~~~q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG-TVKQ 312 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc-eEEE
Confidence 468999999999999999999999999985 46677788899999999999999999999999999999998775 4556
Q ss_pred eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCC
Q 021459 102 TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG 181 (312)
Q Consensus 102 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 181 (312)
.+.-|..+...+.|-. ...+++++.|+.|+++.+....+..++.+|..+|.++.|.|.+.+|++++.|++++||.....
T Consensus 313 ~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 6677877767788855 357899999999999999988889999999999999999999999999999999999998887
Q ss_pred ceeeEcccCCCCcEEEEEECCCC---------CEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459 182 ACLKTLIDDKDPAVSFAKFSPNG---------KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI 252 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
.....+..+ ...+..+.|+|.| ..+++++.|++|++||...+.++..+..|..+.+.+. +.++++++
T Consensus 392 ~~~~~l~~H-skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva---fS~~g~yl 467 (524)
T KOG0273|consen 392 NSVHDLQAH-SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA---FSPNGRYL 467 (524)
T ss_pred cchhhhhhh-ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE---ecCCCcEE
Confidence 776666543 4446667788864 4789999999999999999999999999999876654 34889999
Q ss_pred EEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 253 VSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 253 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
|+|+.||.|.+|+.++++.++.+.+ .+.|..|.|+..|.+|..+-.|| .+.+-+
T Consensus 468 AsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~--~vcvld 521 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDG--SVCVLD 521 (524)
T ss_pred EecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCC--CceEEE
Confidence 9999999999999999999988875 55699999999999988877665 455544
No 24
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-39 Score=239.13 Aligned_cols=287 Identities=24% Similarity=0.364 Sum_probs=235.2
Q ss_pred eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC
Q 021459 17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTP 96 (312)
Q Consensus 17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~ 96 (312)
.+++|+.+++.++|+.+|.+|++++.|.++.||-..+++.+..+.+|+++|+++..+-+.+.|++|+.|.++++||+.++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 47899999999999999999999999999999999899999999999999999999999999999999999999999997
Q ss_pred ceeeeeeecccccEEEEEEecCCCEEEEeec-----CCcEEEEEcC-------CCeEEEEeeecCcCeEEEEEccCCCEE
Q 021459 97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-----DESIRIWEVK-------TGKCTRVIRAHSMPVTSVHFNRDGSLI 164 (312)
Q Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
. ++..++ -..+|..+.|++++++++.+.. .+.|.++|++ +.++...+..+...++.+-|.|-++++
T Consensus 85 k-~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 85 K-QLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred c-EEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 4 454544 4568999999999998887654 3679999997 445566677778889999999999999
Q ss_pred EEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEE
Q 021459 165 VSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTF 244 (312)
Q Consensus 165 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
++|..||.|..||.++++........+...+..++++++..++++++.|.+-++||.++-+.++.+..... +....
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P----vN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP----VNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc----cccee
Confidence 99999999999999998776665556677889999999999999999999999999999998888865432 22222
Q ss_pred EccCCcEEEEeecCCeE--------------EEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 245 SVTNGKYIVSGSEDNCV--------------YVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 245 ~~~~~~~l~~~~~dg~i--------------~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
..|..++++.|+..... ++|++-..+.+..+++|-++|++|+|||+|+.+++||.|| .||+..+
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG--~VR~h~F 316 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDG--YVRLHHF 316 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCc--eEEEEEe
Confidence 23444555554432222 2233333355677889999999999999999999999775 6666554
Q ss_pred c
Q 021459 311 D 311 (312)
Q Consensus 311 ~ 311 (312)
|
T Consensus 317 d 317 (327)
T KOG0643|consen 317 D 317 (327)
T ss_pred c
Confidence 3
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=261.72 Aligned_cols=298 Identities=22% Similarity=0.480 Sum_probs=247.9
Q ss_pred CCCceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcce--EEEeeeccCCEEEEEEccCCCeEEEEcCC
Q 021459 8 PYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLAL--VHRFVGHSEGISDLAWSSDSHYICSASDD 85 (312)
Q Consensus 8 ~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 85 (312)
.|.|+..-+++.+|.+.|+++.|+.|.++|++|+.|-++++|.+...+- ...+.+|...|...-|..+...+.+.+.|
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskd 210 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKD 210 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecC
Confidence 4778888899999999999999999999999999999999999887654 56678999999999999999999999999
Q ss_pred CeEEEEeCCC-----------------------Cce-----e---e----------------------------------
Q 021459 86 RTLRIWDART-----------------------PFD-----C---L---------------------------------- 100 (312)
Q Consensus 86 ~~v~~wd~~~-----------------------~~~-----~---~---------------------------------- 100 (312)
|.+.+|.... +.+ . .
T Consensus 211 G~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~ 290 (893)
T KOG0291|consen 211 GALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFG 290 (893)
T ss_pred ceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeE
Confidence 9999996541 000 0 0
Q ss_pred ----------eeeecccccEEEEEEecCCCEEEEeecC-CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459 101 ----------KTLRGHSDFVFCVNFNPQSNLIVSGSFD-ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH 169 (312)
Q Consensus 101 ----------~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
..+.-....|..++|+..|..++.|+.. |.+-+|+..+...+...++|...+.+++++|||+++++|+.
T Consensus 291 LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~e 370 (893)
T KOG0291|consen 291 LYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAE 370 (893)
T ss_pred EEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccC
Confidence 0000001123445555556777766655 67888888888888888899999999999999999999999
Q ss_pred CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCC
Q 021459 170 DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG 249 (312)
Q Consensus 170 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (312)
||.|++||..++.+..++. ++...++.+.|+.+|+.+++.+.||+|+.||+...+..+++........ .+....+.|
T Consensus 371 DgKVKvWn~~SgfC~vTFt-eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qf--scvavD~sG 447 (893)
T KOG0291|consen 371 DGKVKVWNTQSGFCFVTFT-EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQF--SCVAVDPSG 447 (893)
T ss_pred CCcEEEEeccCceEEEEec-cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceee--eEEEEcCCC
Confidence 9999999999999999885 4567788999999999999999999999999999999999887655432 223344668
Q ss_pred cEEEEeecCC-eEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 250 KYIVSGSEDN-CVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 250 ~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
+++..|+.|. .|.+|++++++++..+.||+++|.+++|+|++..|+++|+| .|||+|++
T Consensus 448 elV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD--kTVRiW~i 507 (893)
T KOG0291|consen 448 ELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD--KTVRIWDI 507 (893)
T ss_pred CEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc--ceEEEEEe
Confidence 8888888776 49999999999999999999999999999999999999977 69999986
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-38 Score=254.63 Aligned_cols=289 Identities=28% Similarity=0.481 Sum_probs=245.3
Q ss_pred eeeecccccceEEEEECCCCC-EEEEEeCCCeEEEEeCCCc------c--eEEEe--ee----ccCCEEEEEEccCCCeE
Q 021459 15 FKTLTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSL------A--LVHRF--VG----HSEGISDLAWSSDSHYI 79 (312)
Q Consensus 15 ~~~~~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~------~--~~~~~--~~----~~~~v~~~~~~~~~~~l 79 (312)
++.+. |+.+|.+.+|+|... .+++++.|-..++|++... + +.+.+ -+ ....|++++|+.+|..|
T Consensus 172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 34444 999999999999776 8999999999999988641 1 01111 01 23579999999999999
Q ss_pred EEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc
Q 021459 80 CSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR 159 (312)
Q Consensus 80 ~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (312)
++|+.||.+++|+... ..+.++..|.++|.++.|+..|+++++++-|+++.+||..+++..+.+..|..+...+.|-.
T Consensus 251 atG~~~G~~riw~~~G--~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~ 328 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDG--NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS 328 (524)
T ss_pred EEeecCcEEEEEecCc--hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec
Confidence 9999999999999864 34667888999999999999999999999999999999999999999999998878889975
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeE
Q 021459 160 DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC 239 (312)
Q Consensus 160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 239 (312)
+ ..|++++.|+.|+++-+.......++.+ +...+..+.|.|.+.+|++++.|++++||..........+..|....+.
T Consensus 329 ~-~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t 406 (524)
T KOG0273|consen 329 N-DEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYT 406 (524)
T ss_pred C-ceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceee
Confidence 4 4689999999999999998888888887 5567889999999999999999999999998887777778888776554
Q ss_pred EEEEE------EccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 240 ITSTF------SVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 240 ~~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
+.... .+..+..+++++.|++|++||+..+.++..+..|+.+|.+|+|+|+++++|+|+.|| .|.||..
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg--~V~iws~ 481 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG--CVHIWST 481 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC--eeEeccc
Confidence 43211 112356799999999999999999999999999999999999999999999999875 7999974
No 27
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.2e-38 Score=262.87 Aligned_cols=282 Identities=24% Similarity=0.484 Sum_probs=252.3
Q ss_pred ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC-CeEEEEeCCCCceee
Q 021459 22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD-RTLRIWDARTPFDCL 100 (312)
Q Consensus 22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~~wd~~~~~~~~ 100 (312)
...|++.+|++..+.|++|-.+|...+|.+....+++.+.-....|..++|+..|+.||.|+.. |.+.+|+.+.. ..+
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-sYV 343 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-SYV 343 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc-cee
Confidence 3789999999999999999999999999999999999988778899999999999999998765 79999998764 345
Q ss_pred eeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459 101 KTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE 180 (312)
Q Consensus 101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 180 (312)
-..++|...+.+++++|||.++++|+.||.|++||..++-|..++..|...|+.+.|+..|+.+++.+-||+|+.||+..
T Consensus 344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEcccCCCCcEEEEEECCCCCEEEEEecCC-eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC
Q 021459 181 GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS-TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN 259 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 259 (312)
.+..+++.........+++.+|.|..+.+|+.|. .|++|++++|+.+.++.+|.++..++.. .+.+..|++|+-|.
T Consensus 424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f---~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF---SPDGSLLASGSWDK 500 (893)
T ss_pred cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE---ccccCeEEeccccc
Confidence 9999888777667788889999999999998886 6999999999999999999998665532 36788999999999
Q ss_pred eEEEEECCch-heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 260 CVYVWDLQQK-TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 260 ~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
+|++||+-.. ..+.+++ +...++.++|+|+|..|++++.|| +|-+|+.
T Consensus 501 TVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldg--qItf~d~ 549 (893)
T KOG0291|consen 501 TVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDG--QITFFDI 549 (893)
T ss_pred eEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecc--eEEEEEh
Confidence 9999999654 3344444 667899999999999999999886 7889986
No 28
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.7e-37 Score=281.74 Aligned_cols=283 Identities=24% Similarity=0.445 Sum_probs=226.9
Q ss_pred ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc----c----eEEEeeeccCCEEEEEEccC-CCeEEEEcCCCeE
Q 021459 18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL----A----LVHRFVGHSEGISDLAWSSD-SHYICSASDDRTL 88 (312)
Q Consensus 18 ~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~----~----~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v 88 (312)
+..|...|.+++|+|++++||+|+.|+.|++|+.... . ....+. +...|.+++|++. +.+|++++.|+.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4458999999999999999999999999999997532 1 112222 3467899999874 7899999999999
Q ss_pred EEEeCCCCceeeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEc-cCCCEEEE
Q 021459 89 RIWDARTPFDCLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN-RDGSLIVS 166 (312)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~ 166 (312)
++||+.+. +.+..+.+|.+.|.+++|+| ++.+|++|+.|++|++||+++++.+..+..+ ..+.++.|+ +++.++++
T Consensus 558 ~lWd~~~~-~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 558 QVWDVARS-QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEECCCC-eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEE
Confidence 99999875 55677889999999999997 7889999999999999999999888777654 578899995 57899999
Q ss_pred eeCCCeEEEEeCCCCce-eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC------cEEEEEEccCCceeE
Q 021459 167 GSHDGTCKIWDAGEGAC-LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG------KFLKIYTGHTNKKYC 239 (312)
Q Consensus 167 ~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~------~~~~~~~~~~~~~~~ 239 (312)
|+.|+.|++||+++... ...+. .+...+..+.|. ++.+|++++.|+.|++||++.+ ..+..+.+|.....+
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~-~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMI-GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred EeCCCeEEEEECCCCCccceEec-CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 99999999999987653 33333 455667888886 6789999999999999999743 456677777665444
Q ss_pred EEEEEEccCCcEEEEeecCCeEEEEECCchheee-------------cccCCccceEEEEEcCCCceEEEeeecCCeeEE
Q 021459 240 ITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ-------------KLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306 (312)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~ 306 (312)
+ ...+++.+|++|+.||.|.+|+......+. ....|...|.+++|+|++..|++++.| ++|+
T Consensus 714 v---~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~d--G~I~ 788 (793)
T PLN00181 714 V---GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANST--GNIK 788 (793)
T ss_pred E---EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCC--CcEE
Confidence 3 334668899999999999999976432221 113355679999999999999999955 5899
Q ss_pred EEee
Q 021459 307 VWVQ 310 (312)
Q Consensus 307 iw~~ 310 (312)
||++
T Consensus 789 i~~~ 792 (793)
T PLN00181 789 ILEM 792 (793)
T ss_pred EEec
Confidence 9986
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.2e-39 Score=271.03 Aligned_cols=209 Identities=33% Similarity=0.595 Sum_probs=197.3
Q ss_pred ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459 14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA 93 (312)
Q Consensus 14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~ 93 (312)
..+++.+|.++|...+|+|+.++|++++.|+++|+|.+.+...+-.+++|..+|..+.|+|.|-++||++.|++.++|..
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 34568999999999999999999999999999999999999998899999999999999999999999999999999988
Q ss_pred CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459 94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC 173 (312)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 173 (312)
.. ...++.+.+|-..|.|+.|+|+.+++++||.|.+|++||+.+|..++.|.+|..+|.+++|+|+|++|++|+.|+.|
T Consensus 523 d~-~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 523 DH-NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLI 601 (707)
T ss_pred cc-CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcE
Confidence 76 45678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC
Q 021459 174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG 224 (312)
Q Consensus 174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 224 (312)
.+||+.++..+..+.++ ...+..+.|+.+|..||+|+.|.+|++||+..-
T Consensus 602 ~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999988888776 777889999999999999999999999998653
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-38 Score=258.44 Aligned_cols=289 Identities=25% Similarity=0.428 Sum_probs=253.7
Q ss_pred ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459 14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA 93 (312)
Q Consensus 14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~ 93 (312)
..+++..|...|.++.|+|-...++++-.+|.+.|||.++..++..+.-...+|.+..|-+..+++++|++|+.|++|+.
T Consensus 5 ~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEec
Confidence 34567779999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEcc-CCCEEEEeeCCC
Q 021459 94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNR-DGSLIVSGSHDG 171 (312)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~ 171 (312)
++. +.++.+.+|++.|+|++.+|...++++++.|-+|++||-+.+ .+.+++++|..-|.+++|.| |.+.|++++-|+
T Consensus 85 nt~-ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 85 NTG-EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred ccc-eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 885 568899999999999999999999999999999999999866 56778999999999999999 668999999999
Q ss_pred eEEEEeCCCCceeeEcccCCCCcEEEEEECCC--CCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCC
Q 021459 172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN--GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNG 249 (312)
Q Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (312)
+|++|.+.+.....++.+ +...+.++.+-+. ..+|++|+.|.+++|||+++..++.++.+|..... ..+..|.-
T Consensus 164 TVKVWslgs~~~nfTl~g-HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs---~v~fhp~l 239 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEG-HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVS---FVFFHPEL 239 (794)
T ss_pred cEEEEEcCCCCCceeeec-cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccce---EEEecCCC
Confidence 999999999888888765 4455677776554 46999999999999999999999999999988744 34555777
Q ss_pred cEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEE
Q 021459 250 KYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRV 307 (312)
Q Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~i 307 (312)
.++++|++||+++||+..+-++...+.-.-+.|+|++-++..+.++.|...|..+|++
T Consensus 240 piiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~l 297 (794)
T KOG0276|consen 240 PIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKL 297 (794)
T ss_pred cEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEc
Confidence 8999999999999999988777777766667899999999988888777666555544
No 31
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-36 Score=229.90 Aligned_cols=293 Identities=23% Similarity=0.420 Sum_probs=244.3
Q ss_pred CCceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC--CC
Q 021459 9 YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD--DR 86 (312)
Q Consensus 9 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~ 86 (312)
|+|.+.++ .-...|+++.|+++|..+++++.|..+++||..+++.+..+..++.++..++|....+.++.++. |.
T Consensus 4 ~~~ak~f~---~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~ 80 (311)
T KOG1446|consen 4 FRPAKVFR---ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDD 80 (311)
T ss_pred cccccccc---cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCC
Confidence 44444333 36778999999999999999999999999999999999999999999999999887777776666 78
Q ss_pred eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459 87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS 166 (312)
Q Consensus 87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
+|+..++.+ .+.++.+.||...|.+++.+|-++.+++++.|++|++||++..++...+..... ..++|.|+|-++|+
T Consensus 81 tIryLsl~d-NkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 81 TIRYLSLHD-NKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFAL 157 (311)
T ss_pred ceEEEEeec-CceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEE
Confidence 999999987 478999999999999999999999999999999999999998887766644333 35689999999999
Q ss_pred eeCCCeEEEEeCCCCc--eeeEc--ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEE
Q 021459 167 GSHDGTCKIWDAGEGA--CLKTL--IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242 (312)
Q Consensus 167 ~~~d~~i~iwd~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 242 (312)
+.....|++||+|.-. ....+ ..........+.|+|||++++.++..+.+++.|.-.|.....+..+......-..
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 9988899999998631 12222 1123455777899999999999999999999999999988888877665422233
Q ss_pred EEEccCCcEEEEeecCCeEEEEECCchheeecccC-CccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG-HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 243 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
+...|+++++++|+.||+|.+|+++++..+..+.+ +..++.++.|+|....+++++ ..+-+|-++
T Consensus 238 a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~----s~l~fw~p~ 303 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS----SNLVFWLPD 303 (311)
T ss_pred EEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC----ceEEEEecc
Confidence 44458999999999999999999999999988888 789999999999988888765 478888764
No 32
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2e-36 Score=245.08 Aligned_cols=288 Identities=23% Similarity=0.425 Sum_probs=246.0
Q ss_pred eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCC----CeE
Q 021459 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDD----RTL 88 (312)
Q Consensus 15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~v 88 (312)
...+..|..+++-.+|||.|.++|+|...|+||||+....+ +...++.-.++|.+|+|+.+++.|++.++- |.+
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 34567899999999999999999999999999999987643 344566678899999999999988877543 467
Q ss_pred EEEeCCCCceeeeeeecccccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe
Q 021459 89 RIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG 167 (312)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
.+||..+. +..+.||...|.++.|-|... .+++|+.|++|.+|+-..-+....++.|..-|.++.|+|||+.|++.
T Consensus 132 F~~DSG~S---vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~ 208 (603)
T KOG0318|consen 132 FLWDSGNS---VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATA 208 (603)
T ss_pred EEecCCCc---cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEe
Confidence 88887553 667889999999999988654 69999999999999977777777888899999999999999999999
Q ss_pred eCCCeEEEEeCCCCceeeEccc--CCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCC-ceeEEEEEE
Q 021459 168 SHDGTCKIWDAGEGACLKTLID--DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN-KKYCITSTF 244 (312)
Q Consensus 168 ~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~ 244 (312)
+.||++.+||-.+++.+..+.. .+...+..+.|+||+..+++++.|.+++|||..+.+.++.+..... ....+.+.+
T Consensus 209 gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW 288 (603)
T KOG0318|consen 209 GSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW 288 (603)
T ss_pred cCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE
Confidence 9999999999999998877652 3566788899999999999999999999999999998888764433 223344433
Q ss_pred EccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 245 SVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 245 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
. ...|++.+.+|.|.+++......+..+.||...|.+|+.+|++.+|.++++|| .|.-|+.
T Consensus 289 q---kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG--~I~~W~~ 349 (603)
T KOG0318|consen 289 Q---KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDG--HINSWDS 349 (603)
T ss_pred e---CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCc--eEEEEec
Confidence 3 56899999999999999998888999999999999999999999999999875 8888876
No 33
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.8e-39 Score=247.91 Aligned_cols=287 Identities=28% Similarity=0.521 Sum_probs=243.1
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEE--------eeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR--------FVGHSEGISDLAWSSDSHYICSASDDRTLRIW 91 (312)
Q Consensus 20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w 91 (312)
+.+..+.|..|||||++|++|+.||-|.||++.++++... +.-+..+|.+++|+.|...|++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 4567789999999999999999999999999998875433 34577899999999999999999999999999
Q ss_pred eCCCCceeeeeee-cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459 92 DARTPFDCLKTLR-GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD 170 (312)
Q Consensus 92 d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
.++++ .+++.+. +|...|.|+.|+.|+..+++++.|.++++.-+++|++++.+++|...|+...|.++|..+++++.|
T Consensus 291 ri~tG-~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 291 RIETG-QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEecc-hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 99986 5666654 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCceeeEcccC-CCCcEE-EEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC
Q 021459 171 GTCKIWDAGEGACLKTLIDD-KDPAVS-FAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN 248 (312)
Q Consensus 171 ~~i~iwd~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
|+|++|+..+..++.++... .+..+. .+-+..+...++++...++|++-+++ |..++.+.......-....+...|.
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCC
Confidence 99999999998887766432 223333 33455566788999999999999874 5666666543322222223344578
Q ss_pred CcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
|+++.+.++|+.++.|...++.+...+.-|+..|..++-||..+.|++-+.| +.+++|.+
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsED--gllKLWkp 508 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSED--GLLKLWKP 508 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhccc--chhhhcCC
Confidence 9999999999999999999999999999999999999999999999998855 58999963
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2e-39 Score=250.55 Aligned_cols=270 Identities=31% Similarity=0.551 Sum_probs=230.2
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceee
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCL 100 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~ 100 (312)
..+.|.|+.+ |...+++|..|.+|+|||..+...+..+.||++.|.|+.| +.+.+++|+.|.+|++||.+++ +++
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tg-e~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTG-EPL 270 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCC-chh
Confidence 4678999987 4567999999999999999999999999999999999888 5669999999999999999986 678
Q ss_pred eeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe---EEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEe
Q 021459 101 KTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK---CTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177 (312)
Q Consensus 101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 177 (312)
+++-+|.+.|..+.|+. .++++++.|.++.+||+.+.. +.+.+.+|..+|+.+.|+ .+++++++.|.+|++|+
T Consensus 271 ~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS 346 (499)
T ss_pred hHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence 88889999999999975 689999999999999997654 334677899999999984 56999999999999999
Q ss_pred CCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeec
Q 021459 178 AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE 257 (312)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (312)
+.+.+.++.+.++. ..+.++ -..++++++|+.|.+|++||...|.+++.+++|.+-..|+.. +.+.+++|+.
T Consensus 347 ~st~efvRtl~gHk-RGIACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF-----d~krIVSGaY 418 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHK-RGIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-----DNKRIVSGAY 418 (499)
T ss_pred ccceeeehhhhccc-ccceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee-----cCceeeeccc
Confidence 99999998876554 334443 457899999999999999999999999999999887766643 4678999999
Q ss_pred CCeEEEEECCchhe---------eecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 258 DNCVYVWDLQQKTM---------IQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 258 dg~i~iwd~~~~~~---------~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
||+|++||+..... +..+..|++.|..+.| |.-++++++ .|.+|.||+++
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsss--HddtILiWdFl 477 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSS--HDDTILIWDFL 477 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEecc--CCCeEEEEEcC
Confidence 99999999975432 3345678999999999 667888888 45699999985
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-37 Score=261.11 Aligned_cols=292 Identities=24% Similarity=0.407 Sum_probs=249.5
Q ss_pred eeceeeecccccceEEEEE-CCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459 12 YRHFKTLTAHSRAVSCVKF-SNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI 90 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~-s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 90 (312)
.+..+.+-|..+.|..++| .|+.+.||.+++.+.+|+|+..+.... -+.+|++.|.++....+|.+|++|+.|+++++
T Consensus 313 l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svil 391 (775)
T KOG0319|consen 313 LTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVIL 391 (775)
T ss_pred cEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEE
Confidence 3445567788889999987 588899999999999999988887765 78999999999997678899999999999999
Q ss_pred EeCCCC---ceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeE-----E----EEeeecCcCeEEEEE
Q 021459 91 WDARTP---FDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKC-----T----RVIRAHSMPVTSVHF 157 (312)
Q Consensus 91 wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~-----~----~~~~~~~~~v~~~~~ 157 (312)
|.+++. ..++....+|...|.+++++..+ ..|+++|.|.++++|++...+. . .....|...|+++++
T Consensus 392 Wr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai 471 (775)
T KOG0319|consen 392 WRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI 471 (775)
T ss_pred EEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe
Confidence 977432 22345567899999999997644 5899999999999999975211 1 123568899999999
Q ss_pred ccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce
Q 021459 158 NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK 237 (312)
Q Consensus 158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 237 (312)
+|+.+++++|+.|.+.++|++.+......+.+ +...+.++.|+|..+.+++++.|++|+||.+.+..+++++.+|....
T Consensus 472 a~ndkLiAT~SqDktaKiW~le~~~l~~vLsG-H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aV 550 (775)
T KOG0319|consen 472 APNDKLIATGSQDKTAKIWDLEQLRLLGVLSG-HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAV 550 (775)
T ss_pred cCCCceEEecccccceeeecccCceEEEEeeC-CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCcccee
Confidence 99999999999999999999998877777655 45668889999999999999999999999999999999999998764
Q ss_pred eEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 238 YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
.. +.+..+++.|++++.||.|++|++++.++...+.+|++.|++++.+|....++||| +|+.|.+|.-
T Consensus 551 lr---a~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg--~Dg~i~~wkD 618 (775)
T KOG0319|consen 551 LR---ASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGG--GDGRIIFWKD 618 (775)
T ss_pred Ee---eeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecC--CCeEEEEeec
Confidence 32 23346799999999999999999999999999999999999999999999999999 5578999974
No 36
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1e-38 Score=236.19 Aligned_cols=283 Identities=26% Similarity=0.429 Sum_probs=245.0
Q ss_pred eecccccceEEEEECC---CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459 17 TLTAHSRAVSCVKFSN---DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA 93 (312)
Q Consensus 17 ~~~~h~~~v~~~~~s~---~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~ 93 (312)
+-.+|+.+|..++||| +|-+|++++.|+.-.+-+-.++..+..+.+|+++|++...+.+....++++.|=+-++||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4468999999999985 8889999999999999999999999999999999999999988888999999999999998
Q ss_pred CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe-EEEEeeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459 94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK-CTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT 172 (312)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
.++.+ +..+ .|...|.+++|+.|.+.|++|+.+..+++||++..+ ....+.+|...|..+-|....+.+++.+.|++
T Consensus 89 ~tgde-lhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 89 VTGDE-LHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhh-hhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 87644 3333 477889999999999999999999999999998654 35577889999999999999999999999999
Q ss_pred EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459 173 CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI 252 (312)
Q Consensus 173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
|++||.+++..+.++.. ...+..+..+++|++|.++. -+.|++||..+-..++.+... +.+......|+..++
T Consensus 167 VRLWD~rTgt~v~sL~~--~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P----~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLEF--NSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMP----CNVESASLHPKKEFF 239 (334)
T ss_pred eEEEEeccCcEEEEEec--CCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCc----cccccccccCCCceE
Confidence 99999999998887754 44577788999999877664 568999999888877766533 334545555777899
Q ss_pred EEeecCCeEEEEECCchheeecc-cCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 253 VSGSEDNCVYVWDLQQKTMIQKL-DGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 253 ~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
++|++|+.++.||..+++.+..+ ++|.++|.||.|+|+|...++||.| ++||||+.
T Consensus 240 VaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED--GTirlWQt 296 (334)
T KOG0278|consen 240 VAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED--GTIRLWQT 296 (334)
T ss_pred EecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCC--ceEEEEEe
Confidence 99999999999999999888885 8999999999999999999999965 59999986
No 37
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-37 Score=264.16 Aligned_cols=288 Identities=28% Similarity=0.495 Sum_probs=249.6
Q ss_pred ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc
Q 021459 18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF 97 (312)
Q Consensus 18 ~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~ 97 (312)
++..+..|-.++|+|....++++--+|.|++||...+.++.++..|.++|..++|+|+..++++|++|-.|++|+..+ .
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-r 83 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-R 83 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-c
Confidence 344567889999999999999999999999999999999999999999999999999999999999999999999877 5
Q ss_pred eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEe
Q 021459 98 DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177 (312)
Q Consensus 98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 177 (312)
+++.++.||.+.|..+.|++.-.+++++|.|-+|++|+..+++++..+.+|...|.|..|+|...+++++|-|.+|++||
T Consensus 84 rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD 163 (1202)
T ss_pred eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEe
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC----------------------------ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc--EE
Q 021459 178 AGEG----------------------------ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK--FL 227 (312)
Q Consensus 178 ~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~ 227 (312)
+..- ..++.+...++..+..++|+|.-..+++|+.|..|++|.+...+ .+
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv 243 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 243 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee
Confidence 6421 01233344566677888999999999999999999999886544 24
Q ss_pred EEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEE
Q 021459 228 KIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRV 307 (312)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~i 307 (312)
.++.+|.+...++ .+.+..+++++.++|+.|++||+...+.++.++-..+.-+.++-||..+.+++|- | .-+.+
T Consensus 244 DtcrgH~nnVssv---lfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-D--sGm~V 317 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSV---LFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-D--SGMIV 317 (1202)
T ss_pred hhhhcccCCcceE---EecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-C--CceEE
Confidence 5667787765544 3446778999999999999999999999999887777889999999998888653 3 34566
Q ss_pred EeecC
Q 021459 308 WVQDR 312 (312)
Q Consensus 308 w~~~~ 312 (312)
+..+|
T Consensus 318 FkleR 322 (1202)
T KOG0292|consen 318 FKLER 322 (1202)
T ss_pred EEEcc
Confidence 66654
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7e-37 Score=256.68 Aligned_cols=293 Identities=26% Similarity=0.493 Sum_probs=237.9
Q ss_pred ceeeecc-cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC--eEEEEcCCCeEEE
Q 021459 14 HFKTLTA-HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH--YICSASDDRTLRI 90 (312)
Q Consensus 14 ~~~~~~~-h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~~ 90 (312)
..+.+.. |++||..++|+|.+.++++||.|+.++|||+..+...+.+++|++.|.++.|+|+-. .|++|..|+.+++
T Consensus 96 ~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~v 175 (775)
T KOG0319|consen 96 LIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRV 175 (775)
T ss_pred HhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEE
Confidence 3444555 999999999999999999999999999999999999999999999999999999754 6899999999999
Q ss_pred EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE----------------------------
Q 021459 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT---------------------------- 142 (312)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---------------------------- 142 (312)
||++....++..+..|.+.|.++.+.+|+..+++++.|..+.+||+.+.+..
T Consensus 176 wnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~T 255 (775)
T KOG0319|consen 176 WNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIIT 255 (775)
T ss_pred EEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEE
Confidence 9998766667778889999999999998888888888888888875321000
Q ss_pred --------------------------------------------------------------------------------
Q 021459 143 -------------------------------------------------------------------------------- 142 (312)
Q Consensus 143 -------------------------------------------------------------------------------- 142 (312)
T Consensus 256 aG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e 335 (775)
T KOG0319|consen 256 AGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE 335 (775)
T ss_pred ecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc
Confidence
Q ss_pred -----------------------EEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeE-------------
Q 021459 143 -----------------------RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT------------- 186 (312)
Q Consensus 143 -----------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~------------- 186 (312)
..+.+|...|.++....+|.+|++|+.|.++++|.+.++.....
T Consensus 336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg 415 (775)
T KOG0319|consen 336 ESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG 415 (775)
T ss_pred cceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc
Confidence 01233444455555334566788888888888885532210000
Q ss_pred ------------------------------------------cccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC
Q 021459 187 ------------------------------------------LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG 224 (312)
Q Consensus 187 ------------------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 224 (312)
....++..+.+++++|+.+++++|+.|++.++|++.+.
T Consensus 416 ava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~ 495 (775)
T KOG0319|consen 416 AVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL 495 (775)
T ss_pred eeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc
Confidence 00113345667889999999999999999999999999
Q ss_pred cEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCee
Q 021459 225 KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRT 304 (312)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~ 304 (312)
....++.+|....+++.+. +....++|+|.|++|+||.+.+..+++++.||...|..+.|-.++.+|++++.|| -
T Consensus 496 ~l~~vLsGH~RGvw~V~Fs---~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adG--l 570 (775)
T KOG0319|consen 496 RLLGVLSGHTRGVWCVSFS---KNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADG--L 570 (775)
T ss_pred eEEEEeeCCccceEEEEec---cccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCC--c
Confidence 9999999999998887543 5678999999999999999999999999999999999999999999999999775 8
Q ss_pred EEEEeec
Q 021459 305 VRVWVQD 311 (312)
Q Consensus 305 v~iw~~~ 311 (312)
++||++.
T Consensus 571 iKlWnik 577 (775)
T KOG0319|consen 571 IKLWNIK 577 (775)
T ss_pred EEEEecc
Confidence 9999873
No 39
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3e-36 Score=227.69 Aligned_cols=239 Identities=27% Similarity=0.521 Sum_probs=213.5
Q ss_pred ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc------ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459 22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSL------ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART 95 (312)
Q Consensus 22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~ 95 (312)
..=|-..+|+|.|+++|.||.|....||++.+. +....+.+|++.+.++.|.+|+ .|++++.|.+..+||+++
T Consensus 97 s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 97 SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIET 175 (343)
T ss_pred ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEccc
Confidence 344667899999999999999999999998754 3445678999999999998855 677999999999999998
Q ss_pred CceeeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459 96 PFDCLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK 174 (312)
Q Consensus 96 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
+ +.+..+.+|.+.|.+++++| +++.+++|+-|+..++||++.+.+.+.|.+|...|+++.|.|+|.-|++|+.|++++
T Consensus 176 g-~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcR 254 (343)
T KOG0286|consen 176 G-QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCR 254 (343)
T ss_pred c-eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeE
Confidence 6 55778899999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCceeeEcccC-CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEE
Q 021459 175 IWDAGEGACLKTLIDD-KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIV 253 (312)
Q Consensus 175 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (312)
+||+|..+.+..+..+ ....+..++|+..|++|.+|..|.++.+||.-.++.+..+.+|.+...|+.. .++|..++
T Consensus 255 lyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~---s~DG~av~ 331 (343)
T KOG0286|consen 255 LYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGV---SPDGMAVA 331 (343)
T ss_pred EEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEE---CCCCcEEE
Confidence 9999998877665432 2345778899999999999999999999999999999999999998777654 48999999
Q ss_pred EeecCCeEEEEE
Q 021459 254 SGSEDNCVYVWD 265 (312)
Q Consensus 254 ~~~~dg~i~iwd 265 (312)
+|+-|..++||.
T Consensus 332 TgSWDs~lriW~ 343 (343)
T KOG0286|consen 332 TGSWDSTLRIWA 343 (343)
T ss_pred ecchhHheeecC
Confidence 999999999994
No 40
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=1e-36 Score=232.26 Aligned_cols=292 Identities=27% Similarity=0.514 Sum_probs=237.0
Q ss_pred ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc------------------ceEEEeeeccCCEEEEEEccC
Q 021459 14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL------------------ALVHRFVGHSEGISDLAWSSD 75 (312)
Q Consensus 14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~------------------~~~~~~~~~~~~v~~~~~~~~ 75 (312)
+..++..|+.++.+-+|+|||.++|||+.|-+|++.|++.. ..+..+-.|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 44678899999999999999999999999999999998621 124455578999999999999
Q ss_pred CCeEEEEcCCCeEEEEeCCCCc--eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEe---eecCc
Q 021459 76 SHYICSASDDRTLRIWDARTPF--DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI---RAHSM 150 (312)
Q Consensus 76 ~~~l~~~~~d~~v~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~ 150 (312)
...|++++.|++|+++|...+. +..+.+ ....+|.+++|+|.|.+++.|....++++||+++-++...- ..|..
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 9999999999999999986431 111112 23468999999999999999999999999999998875432 45788
Q ss_pred CeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCC-CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE
Q 021459 151 PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK-DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI 229 (312)
Q Consensus 151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 229 (312)
.|+++.+++.+++.++++.||.|++||--+++++.++...+ +..++.+.|..+|+++++.+.|..+++|.+.+++.+..
T Consensus 263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence 99999999999999999999999999999999988886655 45688889999999999999999999999999999998
Q ss_pred EEccCC--ce-eEEEEEEEccCCcEEEEe-ecCCeEEEEECCchheeecc-cCCccceEEEEEcCCCceEEEeeecCCee
Q 021459 230 YTGHTN--KK-YCITSTFSVTNGKYIVSG-SEDNCVYVWDLQQKTMIQKL-DGHTDSVISVTCHPTENKIASAGLDGDRT 304 (312)
Q Consensus 230 ~~~~~~--~~-~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~~~~~dgd~~ 304 (312)
+.+... .. ......|. ..+++++.- -..+.+.-||.++......+ .+|++.+..+.-+|.+.-++++|.| .+
T Consensus 343 YtGAg~tgrq~~rtqAvFN-htEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD--~r 419 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFN-HTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDD--FR 419 (430)
T ss_pred EecCCcccchhhhhhhhhc-CccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeeccc--ce
Confidence 876521 11 11112222 345555443 34567889999887666554 4799999999999999999999954 78
Q ss_pred EEEEe
Q 021459 305 VRVWV 309 (312)
Q Consensus 305 v~iw~ 309 (312)
+|+|-
T Consensus 420 aRFWy 424 (430)
T KOG0640|consen 420 ARFWY 424 (430)
T ss_pred eeeee
Confidence 99994
No 41
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.3e-36 Score=256.44 Aligned_cols=251 Identities=35% Similarity=0.642 Sum_probs=216.4
Q ss_pred ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeC-CCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459 14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSA-SSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92 (312)
Q Consensus 14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd 92 (312)
..+++.+|...|+.++|+|++.++++++.|++|++|+. ..+..+..+.+|...|++++|+|+++++++|+.|++|++||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd 274 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWD 274 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEe
Confidence 45667899999999999999999999999999999999 55688899999999999999999999999999999999999
Q ss_pred CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe--EEEEeeecCc--CeEEEEEccCCCEEEEee
Q 021459 93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK--CTRVIRAHSM--PVTSVHFNRDGSLIVSGS 168 (312)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~l~~~~ 168 (312)
+++ .++...+.+|.+.|.+++|+++++.+++++.|+.|++||+.++. +...+..+.. +++.+.|+|++.++++++
T Consensus 275 ~~~-~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 275 VRT-GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred ccC-CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 998 47888999999999999999999999999999999999999998 4566665544 499999999999999999
Q ss_pred CCCeEEEEeCCCCceeeEcccCCCC--cEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459 169 HDGTCKIWDAGEGACLKTLIDDKDP--AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246 (312)
Q Consensus 169 ~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
.|+.+++||++.+........+... .+......+.+.++++|+.|+.|++||..++..+..+.+|.. ..+......
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~--~~~~~~~~~ 431 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSK--AAVSDLSSH 431 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCC--CceeccccC
Confidence 9999999999998887777665544 333444578999999999999999999999888888888841 122223344
Q ss_pred cCCcEEEEee--cCCeEEEEECC
Q 021459 247 TNGKYIVSGS--EDNCVYVWDLQ 267 (312)
Q Consensus 247 ~~~~~l~~~~--~dg~i~iwd~~ 267 (312)
+...++++++ .|+.+++|...
T Consensus 432 ~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 432 PTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCcCeeeecCcCCCceEEEecCC
Confidence 6677888888 79999999653
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-35 Score=247.78 Aligned_cols=286 Identities=24% Similarity=0.446 Sum_probs=245.6
Q ss_pred eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART 95 (312)
Q Consensus 16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~ 95 (312)
.++.+|...|.++++|.+...+++|+. +++++|+..+.+.+.++.. ..+.+..|.|-++++++|...|.+.+||+..
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS 443 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS 443 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence 456799999999999999888888755 6899999999999888764 4788899999999999999999999999976
Q ss_pred CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC-----CeEEEEeee-------cCcCeEEEEEccCCCE
Q 021459 96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT-----GKCTRVIRA-------HSMPVTSVHFNRDGSL 163 (312)
Q Consensus 96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~-----~~~~~~~~~-------~~~~v~~~~~~~~~~~ 163 (312)
. ..+.+.++|.+.+++++.+||++.+++||.|.+|++||..- +...+.+.- -...|.|+.+||||++
T Consensus 444 ~-~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 444 A-SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred h-hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 4 45666779999999999999999999999999999999741 221111211 2356899999999999
Q ss_pred EEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEE
Q 021459 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST 243 (312)
Q Consensus 164 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
++++--|+++++|-+.+-+....+.++. -++.++.++||++.+++|+.|+.|++|-++-|.+.+.+.+|.....++.
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHk-LPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~-- 599 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHK-LPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ-- 599 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccc-cceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE--
Confidence 9999999999999998877777776654 5577788999999999999999999999999999998888887654443
Q ss_pred EEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
| .|...++.+++.||.|+-||-...+.++.+.+|...|+|++.+|+|.+++++| .|.+||+|..+
T Consensus 600 F-~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~s--hD~sIRlwE~t 664 (888)
T KOG0306|consen 600 F-LPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSS--HDKSIRLWERT 664 (888)
T ss_pred E-cccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEecc--CCceeEeeecc
Confidence 3 35778899999999999999999999999999999999999999999999999 55799999864
No 43
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.6e-37 Score=243.00 Aligned_cols=239 Identities=24% Similarity=0.475 Sum_probs=203.6
Q ss_pred CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE
Q 021459 65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV 144 (312)
Q Consensus 65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~ 144 (312)
-.|..+.|.|+|+.|++|+..|.+.+|+... ...-..++.|++.|.++.|++++.++++|+.+|.|+.|+.+-.. ++.
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~ 174 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKI 174 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCce-eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHH
Confidence 4788999999999999999999999998743 22223356899999999999999999999999999999977544 344
Q ss_pred eeec-CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459 145 IRAH-SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223 (312)
Q Consensus 145 ~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 223 (312)
+++| ...|++++|+|+...|++++.||+|+|||....+..+.+ ..+...+.++.|+|...++++++.|+.|++||.++
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL-~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL-RGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee-ccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 4444 489999999999999999999999999999876655544 45677789999999999999999999999999999
Q ss_pred CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCC-ceEEEeeecCC
Q 021459 224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTE-NKIASAGLDGD 302 (312)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~-~~l~~~~~dgd 302 (312)
++++..+..|.. ++....+.+++.+|+++|.|..++++|+++.+.+..+++|...|++++|||-. ..|.+||.|
T Consensus 254 g~cl~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D-- 328 (464)
T KOG0284|consen 254 GSCLATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD-- 328 (464)
T ss_pred cchhhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC--
Confidence 999988877655 34445556788999999999999999999888899999999999999999964 577777855
Q ss_pred eeEEEEeec
Q 021459 303 RTVRVWVQD 311 (312)
Q Consensus 303 ~~v~iw~~~ 311 (312)
+.|..|.++
T Consensus 329 gsvvh~~v~ 337 (464)
T KOG0284|consen 329 GSVVHWVVG 337 (464)
T ss_pred CceEEEecc
Confidence 588888874
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.8e-36 Score=231.28 Aligned_cols=249 Identities=33% Similarity=0.588 Sum_probs=223.5
Q ss_pred eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC-cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS-LALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW 91 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w 91 (312)
...+.|.+|+++|..++|+..|++|++++.|-.+++||... .+++..+.+|...|.+++|-|-|.++++++.|.+|+.|
T Consensus 141 ~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~W 220 (406)
T KOG0295|consen 141 ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAW 220 (406)
T ss_pred hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEE
Confidence 44667899999999999999999999999998899999987 45666778899999999999999999999999999999
Q ss_pred eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccC-----------
Q 021459 92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRD----------- 160 (312)
Q Consensus 92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~----------- 160 (312)
+..++ .+++++.+|...|..++.+.||..+++++.|.+|++|-+.++++...++.|..+|.+++|.|.
T Consensus 221 e~~tg-~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~ 299 (406)
T KOG0295|consen 221 ECDTG-YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG 299 (406)
T ss_pred ecccc-eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC
Confidence 99986 678999999999999999999999999999999999999999999999999999999999763
Q ss_pred ----CCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCc
Q 021459 161 ----GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK 236 (312)
Q Consensus 161 ----~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 236 (312)
+.++.+++.|++|++||+.++.++.++.+ ++..+..++|+|.|++|+++..|+++++||++++++.+.+..|..-
T Consensus 300 ~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g-hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf 378 (406)
T KOG0295|consen 300 STNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG-HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF 378 (406)
T ss_pred CCCCccEEEeecccceEEEEeccCCeEEEEEec-ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce
Confidence 25899999999999999999999998865 5677888999999999999999999999999999999988877665
Q ss_pred eeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459 237 KYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266 (312)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 266 (312)
..++ ....+..++++|+-|..+++|.-
T Consensus 379 vt~l---Dfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 379 VTSL---DFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEE---ecCCCCceEEeccccceeeeeec
Confidence 4443 33445669999999999999963
No 45
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.3e-34 Score=215.55 Aligned_cols=295 Identities=22% Similarity=0.399 Sum_probs=239.1
Q ss_pred CCCCCceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE--EeeeccCCEEEEEEccC-CCeEEEE
Q 021459 6 TPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH--RFVGHSEGISDLAWSSD-SHYICSA 82 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~~~ 82 (312)
.++++.+.. +.+++|.+.|.+++|+.+|..|++|+.|+++.+|++.....+. ...+|.+.|..++|+|. ...++++
T Consensus 5 ~~~~~~l~~-r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~ata 83 (313)
T KOG1407|consen 5 LPKFKSLKR-RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATA 83 (313)
T ss_pred ccchhhhhh-HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEe
Confidence 355666654 7788999999999999999999999999999999998765433 35689999999999984 6799999
Q ss_pred cCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC
Q 021459 83 SDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS 162 (312)
Q Consensus 83 ~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 162 (312)
+.|++|++||.+..+. ........+.+ -+.|+|++++++.++.|..|.+.|.++-+.....+ ....+..+.|+.++.
T Consensus 84 s~dk~ir~wd~r~~k~-~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd 160 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGKC-TARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSND 160 (313)
T ss_pred cCCceEEEEEeccCcE-EEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCC
Confidence 9999999999988643 43333233333 47899999999999999999999999877655443 334577788888888
Q ss_pred EEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEE
Q 021459 163 LIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242 (312)
Q Consensus 163 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 242 (312)
+|+.....|.|.|....+-+.+..+.. +.....++.|+|+|+++|+|+.|..+.+||++.--+++.+..+.-+ +..
T Consensus 161 ~Fflt~GlG~v~ILsypsLkpv~si~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp---VRT 236 (313)
T KOG1407|consen 161 LFFLTNGLGCVEILSYPSLKPVQSIKA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP---VRT 236 (313)
T ss_pred EEEEecCCceEEEEecccccccccccc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc---eEE
Confidence 888888889999988776666666544 4456667889999999999999999999999887777777655433 444
Q ss_pred EEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCe-------eEEEEe
Q 021459 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDR-------TVRVWV 309 (312)
Q Consensus 243 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~-------~v~iw~ 309 (312)
..+..+|++||+|++|..|-|=+.+++..+.+++ +.++...|+|||....||.+..|.+. +|+++=
T Consensus 237 lSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG 309 (313)
T KOG1407|consen 237 LSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFG 309 (313)
T ss_pred EEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEec
Confidence 4445789999999999999999999999888876 68899999999999999999887764 777763
No 46
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.7e-34 Score=225.34 Aligned_cols=279 Identities=32% Similarity=0.508 Sum_probs=229.6
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC---CCeEEEEcCCCeEEEEeCCCC
Q 021459 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD---SHYICSASDDRTLRIWDARTP 96 (312)
Q Consensus 20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~~wd~~~~ 96 (312)
.|.+=|+++... ++.|+||+.||.+++|+.. |+....+.+|.++|.+++|.-. ...+++++.|.++++|..+.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488888888877 7889999999999999955 6777889999999998888643 346999999999999987654
Q ss_pred ce---eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC-------------------------CeEEEEeeec
Q 021459 97 FD---CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT-------------------------GKCTRVIRAH 148 (312)
Q Consensus 97 ~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~-------------------------~~~~~~~~~~ 148 (312)
.. .++.-+||...|-+++..+++..+++|+.|..|++|+..+ +.++..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 32 2333458999999999999999999999999999999321 1234567889
Q ss_pred CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc---
Q 021459 149 SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK--- 225 (312)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--- 225 (312)
..+|.++.|++ ...+.+++.|-+|+.||+.++....++.. ...+.++..+|..++|++|+.|..+++||.+++.
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec--CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 99999999987 66899999999999999999988877654 3457778899999999999999999999998764
Q ss_pred EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchh-eeecccCCccceEEEEEcCCCceEEEeeecCCee
Q 021459 226 FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKT-MIQKLDGHTDSVISVTCHPTENKIASAGLDGDRT 304 (312)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~ 304 (312)
....+.+|..-. -.+.+.+.+...|++|+.||++++||+++-. ++..+.+|.+.|.++.|.. +..+++||.| .+
T Consensus 337 v~~s~~gH~nwV--ssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD--~~ 411 (423)
T KOG0313|consen 337 VSQSLIGHKNWV--SSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGAD--NK 411 (423)
T ss_pred eEEeeecchhhh--hheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCc--ce
Confidence 235577777633 3334556667789999999999999998765 8899999999999999974 4589999966 68
Q ss_pred EEEEe
Q 021459 305 VRVWV 309 (312)
Q Consensus 305 v~iw~ 309 (312)
|+|+.
T Consensus 412 l~i~~ 416 (423)
T KOG0313|consen 412 LRIFK 416 (423)
T ss_pred EEEec
Confidence 88875
No 47
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-34 Score=215.39 Aligned_cols=279 Identities=23% Similarity=0.422 Sum_probs=218.7
Q ss_pred EEEECC-CCCEEEEE-------eCCCeEEEEeCCCcceEEEee--eccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCC
Q 021459 27 CVKFSN-DGTLLASA-------SLDKTVIIWSASSLALVHRFV--GHSEGISDLAWSSD-SHYICSASDDRTLRIWDART 95 (312)
Q Consensus 27 ~~~~s~-~~~~l~t~-------~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~ 95 (312)
++.||| -.++||.+ ...|.+.|.++...+-+.... .-.+.+..++|++. .+.+++++.||++++||+..
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~ 92 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM 92 (311)
T ss_pred eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC
Confidence 478998 23333332 235888898886443333222 23578999999985 56888999999999999877
Q ss_pred CceeeeeeecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCEEEEeeCCCeE
Q 021459 96 PFDCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTC 173 (312)
Q Consensus 96 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i 173 (312)
+..++..++.|...|.++.|++- ...+++++.|++|++|+...++.+.++.+|...|+..+|+| ..+++++++.|+.+
T Consensus 93 ~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l 172 (311)
T KOG0277|consen 93 PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTL 172 (311)
T ss_pred CCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceE
Confidence 77778889999999999999984 45688889999999999999999999999999999999999 67899999999999
Q ss_pred EEEeCCCCceeeEcccCCCCcEEEEEECC-CCCEEEEEecCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcE
Q 021459 174 KIWDAGEGACLKTLIDDKDPAVSFAKFSP-NGKFILVGTLDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKY 251 (312)
Q Consensus 174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (312)
++||++.......+ ..+...+.++.|+. +...|++|+.|+.|+.||+++-+ .+..+.+|.-....+ .+++....+
T Consensus 173 ~lwdvr~~gk~~~i-~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkv--k~Sph~~~l 249 (311)
T KOG0277|consen 173 RLWDVRSPGKFMSI-EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKV--KFSPHHASL 249 (311)
T ss_pred EEEEecCCCceeEE-EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEE--ecCcchhhH
Confidence 99999875444444 33445566666765 56688999999999999998765 355566665443333 344445678
Q ss_pred EEEeecCCeEEEEECC-chheeecccCCccceEEEEEcC-CCceEEEeeecCCeeEEEEee
Q 021459 252 IVSGSEDNCVYVWDLQ-QKTMIQKLDGHTDSVISVTCHP-TENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 252 l~~~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~p-~~~~l~~~~~dgd~~v~iw~~ 310 (312)
|++++.|-+++|||.. ....+.+...|+.-|..+.|++ ++.++|+.|.|+ .+.||++
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe--~l~Vw~p 308 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDE--LLYVWNP 308 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeeccccc--ceeeecc
Confidence 9999999999999997 4455667788999999999987 467899999774 8999985
No 48
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2e-34 Score=218.52 Aligned_cols=247 Identities=28% Similarity=0.499 Sum_probs=211.9
Q ss_pred EEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEc
Q 021459 57 VHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEV 136 (312)
Q Consensus 57 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~ 136 (312)
+..+.+|++.|+.+.|+|+|.++++|+.|..|.+|++....+..-.+++|.+.|..+.|.+|++.+++++.|.+|+.||.
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~ 119 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDA 119 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEec
Confidence 34567899999999999999999999999999999986655666678899999999999999999999999999999999
Q ss_pred CCCeEEEEeeecCcCeEEEEEccCC-CEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCe
Q 021459 137 KTGKCTRVIRAHSMPVTSVHFNRDG-SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST 215 (312)
Q Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~ 215 (312)
++|++.+.++.|..-++.+.-+.-| .++.+++.|+++++||+|+...++.+. ....+..+.|...+..+.+|+.|+.
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc--cceeEEEEEecccccceeeccccCc
Confidence 9999999999999988888755444 456688999999999999888777663 2456788899999999999999999
Q ss_pred EEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch----heeecccCCc----cceEEEEE
Q 021459 216 LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK----TMIQKLDGHT----DSVISVTC 287 (312)
Q Consensus 216 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~----~~v~~l~~ 287 (312)
|++||++.++...++.+|.+. ++..+..+.|.++.+-+.|.++++||.+.. .++..+++|. ...+..+|
T Consensus 198 ikvWd~r~~d~~~~lsGh~Dt---It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADT---ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred eeeeccccCcceEEeecccCc---eeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 999999999999999999886 444555688999999999999999999643 3355566643 35677789
Q ss_pred cCCCceEEEeeecCCeeEEEEee
Q 021459 288 HPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 288 ~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
+|++..+.+++.| ..|.+|+.
T Consensus 275 sp~~~~i~ags~d--r~vyvwd~ 295 (338)
T KOG0265|consen 275 SPNGTKITAGSAD--RFVYVWDT 295 (338)
T ss_pred cCCCCcccccccc--ceEEEeec
Confidence 9999999988855 79999986
No 49
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=6.3e-33 Score=237.98 Aligned_cols=269 Identities=20% Similarity=0.291 Sum_probs=209.0
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceE-------------EEeeeccCCEEEEEEcc-CCCeEEEEcCCC
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALV-------------HRFVGHSEGISDLAWSS-DSHYICSASDDR 86 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~-------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~ 86 (312)
|-..|.....++++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4456667777888777788888888888876544322 13678999999999999 788999999999
Q ss_pred eEEEEeCCCCc------eeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc
Q 021459 87 TLRIWDARTPF------DCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR 159 (312)
Q Consensus 87 ~v~~wd~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (312)
.|++||+.+.. ..+..+.+|...|.+++|+|++ ++|++++.|++|++||+++++....+..|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 99999986532 2456778999999999999975 6999999999999999999998888888999999999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe----cCCeEEEEEcCCCc-EEEEEEccC
Q 021459 160 DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT----LDSTLKLWNYSAGK-FLKIYTGHT 234 (312)
Q Consensus 160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~d~~i~v~d~~~~~-~~~~~~~~~ 234 (312)
++.+|++++.|+.|++||+++++.+..+..+.......+.|.+++..+++++ .|+.|++||+++.. .+.....+.
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~ 258 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ 258 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence 9999999999999999999998887776554444444566888887777654 47899999998654 333332222
Q ss_pred CceeEEEEEEEccCCcEEEEee-cCCeEEEEECCchheeecccC-CccceEEEEEcCCC
Q 021459 235 NKKYCITSTFSVTNGKYIVSGS-EDNCVYVWDLQQKTMIQKLDG-HTDSVISVTCHPTE 291 (312)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~p~~ 291 (312)
.. .+...+..+++.+|++++ .||.|++||+.+++.+..... +..++..+++.|..
T Consensus 259 ~~--~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 259 SS--ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CC--ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 21 223334556788888877 599999999998877655433 44567888888753
No 50
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=1.5e-34 Score=233.91 Aligned_cols=296 Identities=28% Similarity=0.465 Sum_probs=228.9
Q ss_pred CCceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEE----e-eeccCCEEEEEEccCCCeEEEEc
Q 021459 9 YKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR----F-VGHSEGISDLAWSSDSHYICSAS 83 (312)
Q Consensus 9 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~----~-~~~~~~v~~~~~~~~~~~l~~~~ 83 (312)
..|+.+..++.+|++.|+++++.|.|.++++|+.|..|++||+..+....+ + .+....|.++.|++.|..|++.+
T Consensus 154 ~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 154 LIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred cCCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe
Confidence 356777788999999999999999999999999999999999986533211 1 12345789999999999888888
Q ss_pred CCCeEEEEeCCCCcee------------eeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeE-EEEee---
Q 021459 84 DDRTLRIWDARTPFDC------------LKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKC-TRVIR--- 146 (312)
Q Consensus 84 ~d~~v~~wd~~~~~~~------------~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~-~~~~~--- 146 (312)
.....+++|-.. .+. +..-+||...+.|.+|+|+. +.+++++.||++++||+++-+. .++++
T Consensus 234 g~aqakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 234 GSAQAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred cCcceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 888999998643 221 23346899999999999976 5799999999999999975432 33332
Q ss_pred --ecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCcee--eEcccCC--CCcEEEEEECCCCCEEEEEecCCeEEEEE
Q 021459 147 --AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL--KTLIDDK--DPAVSFAKFSPNGKFILVGTLDSTLKLWN 220 (312)
Q Consensus 147 --~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~v~d 220 (312)
+...+++.++|+|+++.+|+|..||.|.+|+.++...- ..+...+ ...++++.|+++|++|++-+.|+++++||
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 22456889999999999999999999999998653321 1122223 34789999999999999999999999999
Q ss_pred cCCCc-EEEEEEccCCceeEEEEEEEccCCcEEEEee------cCCeEEEEECCchheeecccCCccceEEEEEcCCCce
Q 021459 221 YSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYIVSGS------EDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENK 293 (312)
Q Consensus 221 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 293 (312)
+++-+ .+....+-........++| .|+.++|++|. ..|.+.+||..+...++++.-....|..+.|||.-++
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~F-SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQ 471 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCF-SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQ 471 (641)
T ss_pred ccccccchhhhcCCCccCCCCcccc-CCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhh
Confidence 98754 4554444333222233344 47788999875 4688999999999888888877889999999999999
Q ss_pred EEEeeecCCeeEEEE
Q 021459 294 IASAGLDGDRTVRVW 308 (312)
Q Consensus 294 l~~~~~dgd~~v~iw 308 (312)
+..++.| ++++++
T Consensus 472 i~~gsgd--G~~~vy 484 (641)
T KOG0772|consen 472 IFAGSGD--GTAHVY 484 (641)
T ss_pred eeeecCC--CceEEE
Confidence 9999955 566653
No 51
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-34 Score=237.54 Aligned_cols=248 Identities=27% Similarity=0.441 Sum_probs=218.1
Q ss_pred EeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC
Q 021459 59 RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT 138 (312)
Q Consensus 59 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 138 (312)
++..++..|.++.++|....++++-.+|.|.+||-++. ..++.+.-..-+|++..|-+-.+++++|+.|..|++|+.++
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetq-tmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ-TMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccc-eeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 44558899999999999999999999999999998874 56777777778899999999899999999999999999999
Q ss_pred CeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC-CCCEEEEEecCCeEE
Q 021459 139 GKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP-NGKFILVGTLDSTLK 217 (312)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~ 217 (312)
++.++.+.+|..-|++++.+|...++++++.|-.|++||...+-...+....+.--+..++|.| |.+.+++++.|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 9999999999999999999999999999999999999999876544444444444455667777 567999999999999
Q ss_pred EEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEe
Q 021459 218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASA 297 (312)
Q Consensus 218 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~ 297 (312)
+|.+-+.....++++|....+|+..- ...+..+|++|++|..|++||.++..++++++||...|+.+.|||.-+.+++|
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy-~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYY-TGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEec-cCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence 99999888889999999998888642 33455699999999999999999999999999999999999999999999999
Q ss_pred eecCCeeEEEEee
Q 021459 298 GLDGDRTVRVWVQ 310 (312)
Q Consensus 298 ~~dgd~~v~iw~~ 310 (312)
|.| ++||||+-
T Consensus 246 sED--GTvriWhs 256 (794)
T KOG0276|consen 246 SED--GTVRIWNS 256 (794)
T ss_pred cCC--ccEEEecC
Confidence 965 59999984
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-33 Score=211.18 Aligned_cols=239 Identities=29% Similarity=0.518 Sum_probs=196.0
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC--cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC--
Q 021459 19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS--LALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR-- 94 (312)
Q Consensus 19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~-- 94 (312)
.+|+..|+.++|+|.|++|++|+.|.++.||.-.. .+++..++||...|.+++|+++|.+||+|+.|++|-+|.+.
T Consensus 58 ~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 58 DGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred ccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 36999999999999999999999999999997653 47889999999999999999999999999999999999886
Q ss_pred CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC-C--eEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459 95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT-G--KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG 171 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~-~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
...++...+..|...|..+.|+|...+|+++++|.+|++|+-.. + .+..++.+|...|.+++|+|.|..+++++.|+
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~ 217 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDG 217 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCc
Confidence 44567888899999999999999999999999999999997652 2 57788999999999999999999999999999
Q ss_pred eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc--E-----EEEEEccCCceeEEEEEE
Q 021459 172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK--F-----LKIYTGHTNKKYCITSTF 244 (312)
Q Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~-----~~~~~~~~~~~~~~~~~~ 244 (312)
+++||-.... +...+...+..+.|. ...|++++.|+.|++|--...- . .+.-..|... +....
T Consensus 218 tv~Iw~~~~~-----~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d---VNsV~ 287 (312)
T KOG0645|consen 218 TVSIWRLYTD-----LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD---VNSVQ 287 (312)
T ss_pred ceEeeeeccC-----cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccc---cceEE
Confidence 9999976532 223344556667777 4589999999999999754321 0 1112234443 33333
Q ss_pred Ecc-CCcEEEEeecCCeEEEEECC
Q 021459 245 SVT-NGKYIVSGSEDNCVYVWDLQ 267 (312)
Q Consensus 245 ~~~-~~~~l~~~~~dg~i~iwd~~ 267 (312)
..| ....|++|++||.|++|.+.
T Consensus 288 w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 288 WNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EcCCCCCceeecCCCceEEEEEec
Confidence 334 46789999999999999864
No 53
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.5e-34 Score=222.98 Aligned_cols=244 Identities=24% Similarity=0.425 Sum_probs=214.3
Q ss_pred EEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC
Q 021459 58 HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK 137 (312)
Q Consensus 58 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~ 137 (312)
..+.+|.+.|.++++.|-.+++++|+.|++++|||+.++ +...++.||-..|..+++++-..++++++.|+.|+.||++
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC-eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 446789999999999999999999999999999999986 5567889999999999999999999999999999999999
Q ss_pred CCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEE
Q 021459 138 TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLK 217 (312)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 217 (312)
..+.++.+.+|-..|++++.+|.-..+++|+.|.++++||+++...+..+.++. ..+..+.+.|-...+++|+.|++|+
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~-~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT-NPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC-CcceeEEeecCCCceEEecCCceEE
Confidence 999999999999999999999999999999999999999999988888776654 4566666777778899999999999
Q ss_pred EEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEe
Q 021459 218 LWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASA 297 (312)
Q Consensus 218 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~ 297 (312)
+||++.++....+..|.....+ ....|....+|+++.|. |+-|++..+..+..+.+|.+-|++++...|+ .+++|
T Consensus 303 lWDl~agkt~~tlt~hkksvra---l~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G 377 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRA---LCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSG 377 (460)
T ss_pred EeeeccCceeEeeecccceeeE---EecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEc
Confidence 9999999988888777654333 33446677888888885 9999999999999999999999999998876 77777
Q ss_pred eecCCeeEEEEee
Q 021459 298 GLDGDRTVRVWVQ 310 (312)
Q Consensus 298 ~~dgd~~v~iw~~ 310 (312)
+. .+.+.+|+.
T Consensus 378 ~d--ng~~~fwdw 388 (460)
T KOG0285|consen 378 GD--NGSIMFWDW 388 (460)
T ss_pred CC--ceEEEEEec
Confidence 73 468999986
No 54
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-34 Score=243.64 Aligned_cols=249 Identities=31% Similarity=0.601 Sum_probs=201.4
Q ss_pred eeeec-ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC--------------------------------c-------
Q 021459 15 FKTLT-AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS--------------------------------L------- 54 (312)
Q Consensus 15 ~~~~~-~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~--------------------------------~------- 54 (312)
.+.+. +|+++|-+++||+||++||+||.|+.|+||.+.. .
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 34456 8999999999999999999999999999996543 0
Q ss_pred ---------------------ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEE
Q 021459 55 ---------------------ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCV 113 (312)
Q Consensus 55 ---------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~ 113 (312)
+++..+.||...|.+|.|+.++ +|++++.|++|++|++.. ..+++.+. |.+.|.|+
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTCV 415 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-cceeeEEe-cCCeeEEE
Confidence 1122356899999999999755 888999999999999986 47787764 99999999
Q ss_pred EEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc----
Q 021459 114 NFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI---- 188 (312)
Q Consensus 114 ~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---- 188 (312)
+|+| |.+++++|+.|+.|++|++...+...-...+ .-|++++|.|||+..+.|+.+|.+++|+....+......
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~ 494 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH 494 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec
Confidence 9999 6789999999999999999877654433333 579999999999999999999999999988765543221
Q ss_pred ---cCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEE
Q 021459 189 ---DDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVW 264 (312)
Q Consensus 189 ---~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 264 (312)
......|+.+.+.|.. ..+++.+.|..|||||.++...+..+++.......+...+.. +|++|+++++|..|++|
T Consensus 495 ~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 495 NKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYIW 573 (712)
T ss_pred cCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEEE
Confidence 1112246777776643 357888899999999998888888888777666666666664 89999999999999999
Q ss_pred ECCc
Q 021459 265 DLQQ 268 (312)
Q Consensus 265 d~~~ 268 (312)
+...
T Consensus 574 ~~~~ 577 (712)
T KOG0283|consen 574 KNDS 577 (712)
T ss_pred eCCC
Confidence 9743
No 55
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-33 Score=226.92 Aligned_cols=295 Identities=21% Similarity=0.383 Sum_probs=232.1
Q ss_pred CccCCCCCCceeceeeeccc--ccceEEEEECCCCCE-EEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCe
Q 021459 2 AAAQTPPYKPYRHFKTLTAH--SRAVSCVKFSNDGTL-LASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHY 78 (312)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~-l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 78 (312)
|+..+|++...+.+....-| .++|++++|+|...+ +|+.+. -.+.+|+..+......+......|+++.|..||++
T Consensus 4 ~~~~t~e~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~L 82 (487)
T KOG0310|consen 4 PQSETPEIRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRL 82 (487)
T ss_pred CcCCCccchhhhhhcccccccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeE
Confidence 34455555544444443333 468999999997654 444333 57999998887776666667789999999999999
Q ss_pred EEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEE
Q 021459 79 ICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHF 157 (312)
Q Consensus 79 l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 157 (312)
|++|...|.|+++|+.+ ...+..+.+|..++....|+|+.+ .+++|+.|+.+++||+.+......+.+|...|.+.+|
T Consensus 83 laaGD~sG~V~vfD~k~-r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~ 161 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKS-RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDI 161 (487)
T ss_pred EEccCCcCcEEEecccc-HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecc
Confidence 99999999999999554 456778899999999999999765 5777888888999999988865578899999999999
Q ss_pred ccC-CCEEEEeeCCCeEEEEeCCCC-ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE-EEEEEccC
Q 021459 158 NRD-GSLIVSGSHDGTCKIWDAGEG-ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF-LKIYTGHT 234 (312)
Q Consensus 158 ~~~-~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~ 234 (312)
+|. +..+++|+.||.|++||.+.. ..+.++ +++.++..+.+-|.|..+++++. ..|++||+.+|.. +.....|.
T Consensus 162 ~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~ 238 (487)
T KOG0310|consen 162 SPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHN 238 (487)
T ss_pred ccCCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhccc
Confidence 995 458899999999999999986 444443 46677888889999999998875 4799999986654 33344466
Q ss_pred CceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeE
Q 021459 235 NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTV 305 (312)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v 305 (312)
....|+. ...++..|++|+-||.|++||+.+.+.+..+. ..++|.+++.+|+++.++.|..+|-..+
T Consensus 239 KtVTcL~---l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 239 KTVTCLR---LASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEE---eecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence 6555543 34577899999999999999988877777665 5789999999999999999987764333
No 56
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9.5e-33 Score=209.66 Aligned_cols=282 Identities=17% Similarity=0.291 Sum_probs=222.0
Q ss_pred eeceeeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCc-ceE-EEeeeccCCEEEEEEccCCCeEEEEcCCCeE
Q 021459 12 YRHFKTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSL-ALV-HRFVGHSEGISDLAWSSDSHYICSASDDRTL 88 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~-~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v 88 (312)
.+.+..-...++.|.+|+||| ...+++.++.|++||+|+++.. ... .....|.++|.+++|+.||..+++|+.|+.+
T Consensus 17 ~kd~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~ 96 (347)
T KOG0647|consen 17 NKDYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQA 96 (347)
T ss_pred ccceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCce
Confidence 344444456789999999999 5567778999999999999873 332 2345689999999999999999999999999
Q ss_pred EEEeCCCCceeeeeeecccccEEEEEEecCCC--EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459 89 RIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN--LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS 166 (312)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
++||+.++ .+..+..|.++|.++.|-+..+ .|+||++|.+|++||+++...+..++- ...++++.. -..++++
T Consensus 97 k~wDL~S~--Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv--~~pm~vV 171 (347)
T KOG0647|consen 97 KLWDLASG--QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADV--LYPMAVV 171 (347)
T ss_pred EEEEccCC--CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhc--cCceeEE
Confidence 99999986 3667778999999999987665 899999999999999998887776653 335666554 3457888
Q ss_pred eeCCCeEEEEeCCCCcee-eEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC--cEEEEEEccCC------ce
Q 021459 167 GSHDGTCKIWDAGEGACL-KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG--KFLKIYTGHTN------KK 237 (312)
Q Consensus 167 ~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~~~~~------~~ 237 (312)
+..++.|.+|+++++... +.+.......+.+++.-++.+..+.|+.+|.+.+..+..+ +.-..+..|.. ..
T Consensus 172 ata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~V 251 (347)
T KOG0647|consen 172 ATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDV 251 (347)
T ss_pred EecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCce
Confidence 899999999999776433 2222223445677777778877899999999999888765 33334444432 35
Q ss_pred eEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEee
Q 021459 238 YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG 298 (312)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~ 298 (312)
+.+....+.|.-..|+|++.||+..+||-.....+...+.|..+|.+.+|+.+|..++.+.
T Consensus 252 YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 252 YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred EEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 6666555566777899999999999999988888888899999999999999999988663
No 57
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=4.5e-32 Score=233.92 Aligned_cols=249 Identities=18% Similarity=0.306 Sum_probs=194.7
Q ss_pred EeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCCCc-------eeeeeeecccccEE
Q 021459 40 ASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDARTPF-------DCLKTLRGHSDFVF 111 (312)
Q Consensus 40 ~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~~~-------~~~~~~~~~~~~v~ 111 (312)
|+.++.+++|+......+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+.+.. ..+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567789999998877778889999999999999997 7899999999999999987532 12345678999999
Q ss_pred EEEEecCCCE-EEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccC
Q 021459 112 CVNFNPQSNL-IVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDD 190 (312)
Q Consensus 112 ~~~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 190 (312)
+++|+|++.. +++++.|++|++||+++++....+. |...|.+++|+|+|.+|++++.|+.|++||+++++.+.++..+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999998875 5789999999999999988766664 5678999999999999999999999999999999887776554
Q ss_pred CCCc----EEEEEECCCCCEEEEEecCC----eEEEEEcCC-CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeE
Q 021459 191 KDPA----VSFAKFSPNGKFILVGTLDS----TLKLWNYSA-GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCV 261 (312)
Q Consensus 191 ~~~~----~~~~~~~~~~~~l~~~~~d~----~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 261 (312)
.... +....+++++.+|++++.|+ +|++||++. ++.+..+..+.. ...+...+..+++.++++|+.|+.|
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-ccceEEeeeCCCCCEEEEEECCCeE
Confidence 4322 12234568889999988774 799999985 455554433222 2223334445678899999999999
Q ss_pred EEEECCchheeecccC--CccceEEEEEcCCC
Q 021459 262 YVWDLQQKTMIQKLDG--HTDSVISVTCHPTE 291 (312)
Q Consensus 262 ~iwd~~~~~~~~~~~~--h~~~v~~l~~~p~~ 291 (312)
++|++..+.. ..+.. +..+..+++|.|..
T Consensus 288 r~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 288 RYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 9999976543 22222 45778899999975
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1e-34 Score=228.76 Aligned_cols=288 Identities=24% Similarity=0.440 Sum_probs=239.9
Q ss_pred ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459 14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW 91 (312)
Q Consensus 14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w 91 (312)
....+..|.+.|..+.|-++...|++|+.|..|++|+....+ ....+.+..++|+++.|.++++++++++.|+.+++|
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 334567899999999999999999999999999999987765 566677778899999999999999999999999999
Q ss_pred eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459 92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG 171 (312)
Q Consensus 92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
++... +...++.+|.+.|.++.|......+++|+.|.+|+.||+....|.++... ...+..+..+ ...+++|..|+
T Consensus 247 nvd~~-r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~Dk 322 (459)
T KOG0288|consen 247 NVDSL-RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDK 322 (459)
T ss_pred eccch-hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeeccccc
Confidence 99874 56778999999999999988776799999999999999999888766532 2345566554 55789999999
Q ss_pred eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce-eEEEEEEEccCCc
Q 021459 172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK-YCITSTFSVTNGK 250 (312)
Q Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 250 (312)
+|++||.++......... .+.++.+..++++..|++++.|.++.++|+++.+....+....... ...+...+.|+++
T Consensus 323 kvRfwD~Rs~~~~~sv~~--gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPL--GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred ceEEEeccCCceeeEeec--CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence 999999999887776643 3478889999999999999999999999999988877766433221 1133334458899
Q ss_pred EEEEeecCCeEEEEECCchheeecccCCcc--ceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 251 YIVSGSEDNCVYVWDLQQKTMIQKLDGHTD--SVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
++++|+.||.|+||++.++++...+..... .|++++|.|.|..|++++ .+..+.+|.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad--k~~~v~lW~ 459 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD--KQKAVTLWT 459 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc--CCcceEecC
Confidence 999999999999999999988877766544 599999999999999988 456888883
No 59
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=5.3e-33 Score=242.80 Aligned_cols=289 Identities=25% Similarity=0.411 Sum_probs=232.0
Q ss_pred ccccceEEEEECCCCCEEEEEe--CCCeEEEEeCCCc------------ceEEEeeeccCCEEEEEEccCCCeEEEEcCC
Q 021459 20 AHSRAVSCVKFSNDGTLLASAS--LDKTVIIWSASSL------------ALVHRFVGHSEGISDLAWSSDSHYICSASDD 85 (312)
Q Consensus 20 ~h~~~v~~~~~s~~~~~l~t~~--~d~~i~vw~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 85 (312)
.++..|.++..+|++..+|||| .|+.+++|+.... +.+.....|.+.|+|+.|+|||++||+|++|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 4567899999999999999999 8999999986531 2344556799999999999999999999999
Q ss_pred CeEEEEeCCC-----------------CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec
Q 021459 86 RTLRIWDART-----------------PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH 148 (312)
Q Consensus 86 ~~v~~wd~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~ 148 (312)
+.|.+|+... ..++...+.+|+..|..++|+|++.++++++.|++|.+|+.++.+.+..+++|
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecc
Confidence 9999998652 01245678899999999999999999999999999999999999999999999
Q ss_pred CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCC-----CcEEEEEECCCCCEEEEEec----CCeEEEE
Q 021459 149 SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD-----PAVSFAKFSPNGKFILVGTL----DSTLKLW 219 (312)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~----d~~i~v~ 219 (312)
...|..+.|.|-|++|++-+.|++|++|++.+-...+.+....+ ..+..+.|+|||++|++... -..+.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 99999999999999999999999999999777555555533322 23556789999999998632 2468888
Q ss_pred EcCCCcEEEEEEccCCceeEEEEEEE---ccC-------Cc----EEEEeecCCeEEEEECCchheeeccc-CCccceEE
Q 021459 220 NYSAGKFLKIYTGHTNKKYCITSTFS---VTN-------GK----YIVSGSEDNCVYVWDLQQKTMIQKLD-GHTDSVIS 284 (312)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------~~----~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~ 284 (312)
+..+-+.-..+.+|..+..++.+... .+. +. .+|+|+.|++|.||.....+++..+. -....|..
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~D 330 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVD 330 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceee
Confidence 87555556677888886555433211 011 11 68999999999999987666554432 24678999
Q ss_pred EEEcCCCceEEEeeecCCeeEEEEee
Q 021459 285 VTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 285 l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
++|+|+|-.|.++|.|| +|.+.++
T Consensus 331 msWspdG~~LfacS~DG--tV~~i~F 354 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDG--TVALIHF 354 (942)
T ss_pred eeEcCCCCeEEEEecCC--eEEEEEc
Confidence 99999999999999886 7777665
No 60
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=7e-33 Score=215.29 Aligned_cols=247 Identities=25% Similarity=0.431 Sum_probs=204.1
Q ss_pred ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459 14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA 93 (312)
Q Consensus 14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~ 93 (312)
...++.+|+++|+++.|+.+|.+||||+.+|.|+||...++.....+...-..+.-+.|+|.+..|++|+.||.+-+|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 44578899999999999999999999999999999999999988888767778899999999999999999999999999
Q ss_pred CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee------cC------------------
Q 021459 94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA------HS------------------ 149 (312)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~------~~------------------ 149 (312)
.+. ...+.+.||..++.+-.|.|+|+.++++..||+|++|++.+++.+..+.. +.
T Consensus 178 p~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 178 PSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred CCc-ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence 874 56788899999999999999999999999999999999999876654431 00
Q ss_pred ---------------------------cC---eEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEE
Q 021459 150 ---------------------------MP---VTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAK 199 (312)
Q Consensus 150 ---------------------------~~---v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (312)
.. |..+.++..-.+.++|+-||+|.|||+...+..+.. .+ ...+..+.
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~h-e~~V~~l~ 334 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EH-EDGVTKLK 334 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cC-CCceEEEE
Confidence 00 001111222235788999999999998876544333 33 34466677
Q ss_pred ECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459 200 FSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ 267 (312)
Q Consensus 200 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 267 (312)
|.+ ..+|++++.+|.|+.||.++|..+..+.+|...+.++.. .++.++++|+|.|++.++|+..
T Consensus 335 w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~l---s~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 335 WLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFAL---SPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEE---cCCCcEEEEecCCCeEEEEecC
Confidence 888 689999999999999999999999999999988766543 4689999999999999999864
No 61
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.3e-35 Score=226.13 Aligned_cols=229 Identities=31% Similarity=0.658 Sum_probs=198.6
Q ss_pred cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE
Q 021459 64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR 143 (312)
Q Consensus 64 ~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 143 (312)
..+|+|+.+ |...+++|..|++|++||..+ ..+++.+.||.+.|.|+.|. .+.+++|+.|.+|++||.++++++.
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 457888888 556799999999999999876 57888899999999999885 4699999999999999999999999
Q ss_pred EeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce--eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEc
Q 021459 144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC--LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNY 221 (312)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~ 221 (312)
++-.|...|..+.|+. .++++++.|..+.+||+..... .+.....+...+..+.| +.+++++++.|.+|++|+.
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEec
Confidence 9999999999999974 4899999999999999976542 22233445566666665 4569999999999999999
Q ss_pred CCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecC
Q 021459 222 SAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG 301 (312)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg 301 (312)
.+++.++++.+|.....|.. .+++++++|+.|.+|++||+..+.++..++||+.-|.++.| +.+.+++|++||
T Consensus 348 st~efvRtl~gHkRGIAClQ-----Yr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDG 420 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQ-----YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG 420 (499)
T ss_pred cceeeehhhhcccccceehh-----ccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccc
Confidence 99999999999988765543 46899999999999999999999999999999999999999 678999999986
Q ss_pred CeeEEEEee
Q 021459 302 DRTVRVWVQ 310 (312)
Q Consensus 302 d~~v~iw~~ 310 (312)
.|++|++
T Consensus 421 --kikvWdl 427 (499)
T KOG0281|consen 421 --KIKVWDL 427 (499)
T ss_pred --eEEEEec
Confidence 8999997
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=8.1e-33 Score=237.70 Aligned_cols=273 Identities=32% Similarity=0.638 Sum_probs=236.5
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEE-eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR-FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC 99 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~ 99 (312)
|...+.+..|. ...+++++.+++|++|+..++..+.. +.+|.+.|.++++..-+.+|++|+.|.++++||..++ ++
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg-~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG-EC 283 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC-cE
Confidence 56678888887 66789999999999999999988877 9999999999999887889999999999999998775 78
Q ss_pred eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCC
Q 021459 100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG 179 (312)
Q Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (312)
...+.+|.+.+.++...+ ..+++|+.|.+|++|++.++.++..+.+|..+|.++..+ +.++++|+.|+.|++||..
T Consensus 284 ~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 899999999999987644 578889999999999999999999999999999999986 7799999999999999999
Q ss_pred CCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC-cEEEEEEccCCceeEEEEEEEccCCcEEEEeecC
Q 021459 180 EGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG-KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED 258 (312)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 258 (312)
++++++.+.+ +...+..+.+.+. ..++.|+.|+.|++||+++. +++..+.+|..-...+. ..+++|++++.|
T Consensus 360 ~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~-----~~~~~Lvs~~aD 432 (537)
T KOG0274|consen 360 TGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLL-----LRDNFLVSSSAD 432 (537)
T ss_pred hceeeeeecC-CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccc-----cccceeEecccc
Confidence 9999998877 4455666656554 79999999999999999999 88888888877553332 347799999999
Q ss_pred CeEEEEECCchheeecccC-CccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 259 NCVYVWDLQQKTMIQKLDG-HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 259 g~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
|.|++||..+++.+..+.+ |...|..+++. ...+++++.| +++++|++.
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~--~~~~l~dl~ 482 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDD--GSVKLWDLR 482 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecC--CeeEEEecc
Confidence 9999999999999999998 67888888876 4567777755 699999863
No 63
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.9e-32 Score=249.88 Aligned_cols=259 Identities=21% Similarity=0.399 Sum_probs=209.6
Q ss_pred CCeEEEEeCCCcceEEE-----eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc-------eeeeeeecccccE
Q 021459 43 DKTVIIWSASSLALVHR-----FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF-------DCLKTLRGHSDFV 110 (312)
Q Consensus 43 d~~i~vw~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~-------~~~~~~~~~~~~v 110 (312)
+|.+++|+......... +..|...|.+++|+|++++|++|+.|+.|++|+..... .....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 57788888776554333 34588999999999999999999999999999975311 0112222 34578
Q ss_pred EEEEEecC-CCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCCCceeeEcc
Q 021459 111 FCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEGACLKTLI 188 (312)
Q Consensus 111 ~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 188 (312)
.+++|++. ++.+++++.||+|++||+.+++.+..+..|...|++++|+| ++.+|++|+.|+.|++||++++..+..+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 89999874 68999999999999999999998889999999999999997 78899999999999999999888776654
Q ss_pred cCCCCcEEEEEE-CCCCCEEEEEecCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459 189 DDKDPAVSFAKF-SPNGKFILVGTLDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266 (312)
Q Consensus 189 ~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 266 (312)
. . ..+..+.| ++++.+|++|+.|+.|++||+++.+ .+..+.+|......+. + .++..|++++.|+.|++||+
T Consensus 616 ~-~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~--f--~~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 616 T-K-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR--F--VDSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred c-C-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEE--E--eCCCEEEEEECCCEEEEEeC
Confidence 3 2 34666667 5679999999999999999998765 4556667776654443 2 25779999999999999999
Q ss_pred Cc------hheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 267 QQ------KTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 267 ~~------~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
.. ...+..+.+|...+..++|+|++++|++++.| ++|++|+.
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D--~~v~iw~~ 737 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET--NEVFVYHK 737 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC--CEEEEEEC
Confidence 74 24567788999999999999999999999955 58999985
No 64
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-32 Score=227.93 Aligned_cols=273 Identities=25% Similarity=0.449 Sum_probs=222.1
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeec-
Q 021459 27 CVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRG- 105 (312)
Q Consensus 27 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~- 105 (312)
-+.|+ ..+.||.| ....|.+|+..++........+...|+++.|+++|.+|++|..+|.|.|||.... +.+..+.+
T Consensus 182 lldWs-s~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~-k~~~~~~~~ 258 (484)
T KOG0305|consen 182 LLDWS-SANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ-KKTRTLRGS 258 (484)
T ss_pred Hhhcc-cCCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc-cccccccCC
Confidence 35677 34556655 3458999999988865555555889999999999999999999999999998774 44666677
Q ss_pred ccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE-eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCcee
Q 021459 106 HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV-IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL 184 (312)
Q Consensus 106 ~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (312)
|...|-+++|+ +..+.+|+.++.|..+|++..+.... +..|...|..++|++|+.++++|+.|+.+.|||.......
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 99999999998 57899999999999999998776554 7789999999999999999999999999999999766666
Q ss_pred eEcccCCCCcEEEEEECCC-CCEEEEE--ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEE-eecCCe
Q 021459 185 KTLIDDKDPAVSFAKFSPN-GKFILVG--TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS-GSEDNC 260 (312)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~-~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~ 260 (312)
..+. .+...+..++|+|- ...||+| +.|+.|++||..++..+........ .....+.....+++.+ |-.++.
T Consensus 337 ~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQ---VcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 337 FTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQ---VCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred EEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCc---eeeEEEcCCCCEEEEecCCCCCc
Confidence 5554 45677888999995 4577776 5799999999999988776543322 2233444444455544 556789
Q ss_pred EEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 261 VYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 261 i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
|.||+..+...+..+.+|...|..++++|++..+++|+ +|.++++|++
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a--~DETlrfw~~ 460 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGA--ADETLRFWNL 460 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEec--ccCcEEeccc
Confidence 99999999999999999999999999999999999999 5579999986
No 65
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-33 Score=222.05 Aligned_cols=252 Identities=24% Similarity=0.463 Sum_probs=211.0
Q ss_pred eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee-eccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459 12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDDRTLRI 90 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 90 (312)
++..+++.+|..+|..+.||||.++|++++.+..+.+||+.++.....+. ++...+.+.+|.|||..+++|+.|+.+..
T Consensus 259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~ 338 (519)
T KOG0293|consen 259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIM 338 (519)
T ss_pred eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEE
Confidence 55678999999999999999999999999999999999999998877664 34678999999999999999999999999
Q ss_pred EeCCCCceeeeeeecc-cccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459 91 WDARTPFDCLKTLRGH-SDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH 169 (312)
Q Consensus 91 wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
||++.. .+...++. ...|.+++..+||+++++...|..|++++.++........ ...+++++.++.+++++++--.
T Consensus 339 wdlDgn--~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 339 WDLDGN--ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQ 415 (519)
T ss_pred ecCCcc--hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcc
Confidence 998753 23344432 2458899999999999999999999999988765544333 3458999999999999999999
Q ss_pred CCeEEEEeCCCCceeeEcccCCCCc--EEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEcc
Q 021459 170 DGTCKIWDAGEGACLKTLIDDKDPA--VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT 247 (312)
Q Consensus 170 d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
+..+++||+.+...++.+.++.... +..+.-..+..++++|+.|+.|+||+..+++.+..+.+|....+|+ .+.+.
T Consensus 416 ~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcV--swNP~ 493 (519)
T KOG0293|consen 416 DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCV--SWNPA 493 (519)
T ss_pred cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEE--ecCCC
Confidence 9999999999888777776655433 3333223456899999999999999999999999999999877776 45666
Q ss_pred CCcEEEEeecCCeEEEEECCc
Q 021459 248 NGKYIVSGSEDNCVYVWDLQQ 268 (312)
Q Consensus 248 ~~~~l~~~~~dg~i~iwd~~~ 268 (312)
+..++|+|++||+|+||-...
T Consensus 494 ~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 494 DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CHHHhhccCCCCeEEEecCCc
Confidence 788999999999999997753
No 66
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.6e-31 Score=216.48 Aligned_cols=247 Identities=38% Similarity=0.712 Sum_probs=212.5
Q ss_pred ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459 14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA 93 (312)
Q Consensus 14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~ 93 (312)
....+..|...+..+.|+|+++++++++.+|.+++|+..+++.+..+..|...|.++.|+++++++++++.++.+.+||+
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 34566789999999999999999999999999999999988888888889989999999999889998888999999999
Q ss_pred CCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459 94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC 173 (312)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 173 (312)
.+. +....+..|...+.++.|+|++.++++++.++.|++||+++++....+..|...+.++.|+|+++.+++++.++.+
T Consensus 123 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 123 ETG-KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred CCc-EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence 864 4566667788899999999998888888889999999999888888888888899999999999999999999999
Q ss_pred EEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEE
Q 021459 174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIV 253 (312)
Q Consensus 174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (312)
++||++.++....+.. +...+..+.++|++.++++++.++.|++||..+++....+..+...... ....+++.+|+
T Consensus 202 ~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~l~ 277 (289)
T cd00200 202 KLWDLSTGKCLGTLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTS---LAWSPDGKRLA 277 (289)
T ss_pred EEEECCCCceecchhh-cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEE---EEECCCCCEEE
Confidence 9999998776665533 3446778889999888888888999999999988887777766554333 33446688999
Q ss_pred EeecCCeEEEEE
Q 021459 254 SGSEDNCVYVWD 265 (312)
Q Consensus 254 ~~~~dg~i~iwd 265 (312)
+++.||.|++|+
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 999999999996
No 67
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-32 Score=232.30 Aligned_cols=246 Identities=25% Similarity=0.524 Sum_probs=205.1
Q ss_pred eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART 95 (312)
Q Consensus 16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~ 95 (312)
..|..|.++|..+.|+|++.++++||.|..|+||++.+.+++.++.+|-+.|..+.|++.-.+++++|+|.+|+||+.++
T Consensus 45 ~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs 124 (1202)
T KOG0292|consen 45 DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS 124 (1202)
T ss_pred hhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC--------C---------------------eEEEEee
Q 021459 96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT--------G---------------------KCTRVIR 146 (312)
Q Consensus 96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~--------~---------------------~~~~~~~ 146 (312)
. .++..+.||...|.|..|+|....++++|.|-+|++||+.. + -....+.
T Consensus 125 r-~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 125 R-KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred C-ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 4 78889999999999999999999999999999999999842 1 0123567
Q ss_pred ecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce-eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc
Q 021459 147 AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC-LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK 225 (312)
Q Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 225 (312)
+|...|+-++|+|.-.++++|+.|+.|++|.+...+. .......+...++++-|+|..+.+++.+.|+.|++||+...+
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 8888999999999999999999999999998865432 222233455668888899999999999999999999999888
Q ss_pred EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459 226 FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266 (312)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 266 (312)
.++++....+.-+++.. .|..+++++|.+.| +.+|.+
T Consensus 284 ~v~tfrrendRFW~laa---hP~lNLfAAgHDsG-m~VFkl 320 (1202)
T KOG0292|consen 284 SVQTFRRENDRFWILAA---HPELNLFAAGHDSG-MIVFKL 320 (1202)
T ss_pred ceeeeeccCCeEEEEEe---cCCcceeeeecCCc-eEEEEE
Confidence 88888765555555443 34555565554444 334433
No 68
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.8e-34 Score=228.27 Aligned_cols=251 Identities=22% Similarity=0.427 Sum_probs=211.1
Q ss_pred cceEEEeeeccCCEEEEEEcc-CCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEE
Q 021459 54 LALVHRFVGHSEGISDLAWSS-DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIR 132 (312)
Q Consensus 54 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 132 (312)
.+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.....+++++.+|..+|..++|++++..+++++.|+.|+
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 355678899999999999999 8999999999999999999887789999999999999999999999999999999999
Q ss_pred EEEcCCCeEEEEeeecCcCeEEEEEccCC-CEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe
Q 021459 133 IWEVKTGKCTRVIRAHSMPVTSVHFNRDG-SLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT 211 (312)
Q Consensus 133 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
+||+++|+++..+.. ...++++.|+|++ +.|++|+.|+.|+.||+++++.+.++- .+-..+..+.|-++|+.+++.+
T Consensus 284 lwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEccCCceEeeec
Confidence 999999999888754 4567999999988 899999999999999999999776653 4455677788999999999999
Q ss_pred cCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch---heeecccCCc--cceEEEE
Q 021459 212 LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK---TMIQKLDGHT--DSVISVT 286 (312)
Q Consensus 212 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~h~--~~v~~l~ 286 (312)
.|+.++||+.+.+..++.+...... .+.+....|++.+++.-+.|+.|.+|.+... ...+.++||. +--..+.
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~h--smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMH--TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhc--cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 9999999999887766554332211 1222344588999999999999999987543 2345678885 4567788
Q ss_pred EcCCCceEEEeeecCCeeEEEEee
Q 021459 287 CHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 287 ~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
|||||.+|++|. +++.+.+|++
T Consensus 440 fSpDG~~l~SGd--sdG~v~~wdw 461 (503)
T KOG0282|consen 440 FSPDGRTLCSGD--SDGKVNFWDW 461 (503)
T ss_pred EcCCCCeEEeec--CCccEEEeec
Confidence 999999999988 4568899986
No 69
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.7e-31 Score=201.07 Aligned_cols=273 Identities=18% Similarity=0.292 Sum_probs=215.7
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC 99 (312)
Q Consensus 20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~ 99 (312)
..++.|+.++|+|....|+.++.||++++|+.....+...+. |..++.+++|.+ ...+++|+.||.|+.+|+.++..
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~- 87 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE- 87 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-
Confidence 357889999999999988889999999999998876655444 889999999987 45688999999999999987643
Q ss_pred eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCC
Q 021459 100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG 179 (312)
Q Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (312)
..+..|...+.|+.+.+....+++|++|++|++||.+.......+.. ...|.++.. .++.|++|+.+..+.+||++
T Consensus 88 -~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v--~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 88 -DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDV--SGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred -eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEec--cCCEEEEeecCceEEEEEcc
Confidence 34556999999999999889999999999999999997554444433 337888766 46789999999999999999
Q ss_pred CCceeeEc-ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC----cEEEEEEccC------CceeEEEEEEEccC
Q 021459 180 EGACLKTL-IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG----KFLKIYTGHT------NKKYCITSTFSVTN 248 (312)
Q Consensus 180 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~ 248 (312)
+.....+. .......+.++++-|++.-.++++.||.|.+=.+... +....+..|. .-.+++....+.|-
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred cccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 86543321 2223456778888888888999999999987444333 2222334343 23456665555566
Q ss_pred CcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeee
Q 021459 249 GKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGL 299 (312)
Q Consensus 249 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~ 299 (312)
...|+||+.||.|.+||+.+++.+..+......|..++|+-+|..||+++.
T Consensus 244 ~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 244 HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 678999999999999999999999999888888999999999999998874
No 70
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.7e-32 Score=231.87 Aligned_cols=247 Identities=23% Similarity=0.458 Sum_probs=197.6
Q ss_pred EEee-eccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC--------------------------------C--------
Q 021459 58 HRFV-GHSEGISDLAWSSDSHYICSASDDRTLRIWDART--------------------------------P-------- 96 (312)
Q Consensus 58 ~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~--------------------------------~-------- 96 (312)
..+. .|.++|.++.|++||+|||+|+.|+.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3455 7999999999999999999999999999997643 0
Q ss_pred -------------------ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEE
Q 021459 97 -------------------FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHF 157 (312)
Q Consensus 97 -------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 157 (312)
.+++..+.||.+.|..+.|+.+ ++|++++.|.+|++|++...+|+..|. |..-|+|++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence 0112346689999999999875 699999999999999999999998874 8899999999
Q ss_pred cc-CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCC-
Q 021459 158 NR-DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN- 235 (312)
Q Consensus 158 ~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~- 235 (312)
+| |.++|++|+-|+.++||++...+... ..+-...++.+++.|+|+..++|+.+|..++|+....+.......+..
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~--W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVD--WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEe--ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 99 88999999999999999998776543 223346789999999999999999999999999887765543321111
Q ss_pred -----ceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCcc--ceEEEEEcCCCceEEEeeecCCeeEEEE
Q 021459 236 -----KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTD--SVISVTCHPTENKIASAGLDGDRTVRVW 308 (312)
Q Consensus 236 -----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~~p~~~~l~~~~~dgd~~v~iw 308 (312)
........+.+.+..-+++.+.|-.|+|+|.++..++.+++|+.. .=..-.|+.+|+++++++ .|..|+||
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s--eDs~VYiW 573 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS--EDSWVYIW 573 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee--cCceEEEE
Confidence 111233344444555566778999999999999999999988643 334557899999999999 45799999
Q ss_pred ee
Q 021459 309 VQ 310 (312)
Q Consensus 309 ~~ 310 (312)
+.
T Consensus 574 ~~ 575 (712)
T KOG0283|consen 574 KN 575 (712)
T ss_pred eC
Confidence 86
No 71
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.1e-31 Score=227.56 Aligned_cols=214 Identities=17% Similarity=0.336 Sum_probs=177.7
Q ss_pred eecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCc-------ceEEEeeeccCCEEEEEEccCC-CeEEEEcCCCe
Q 021459 17 TLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSL-------ALVHRFVGHSEGISDLAWSSDS-HYICSASDDRT 87 (312)
Q Consensus 17 ~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~ 87 (312)
.+.+|.+.|.+++|+| ++++|++|+.|++|++|++... ..+..+.+|...|.+++|+|++ ++|++++.|+.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4679999999999999 8899999999999999998754 3456788999999999999985 69999999999
Q ss_pred EEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcC-eEEEEEccCCCEEEE
Q 021459 88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMP-VTSVHFNRDGSLIVS 166 (312)
Q Consensus 88 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~ 166 (312)
|++||++++ ..+..+.+|.+.|.+++|+|+++.|++++.|+.|++||+++++.+..+..|... ...+.|.+++..+++
T Consensus 150 VrIWDl~tg-~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 150 VNVWDVERG-KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEECCCC-eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 999999875 456677889999999999999999999999999999999999988888888754 346778888777776
Q ss_pred ee----CCCeEEEEeCCCCceeeE-cccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcEEEEEE
Q 021459 167 GS----HDGTCKIWDAGEGACLKT-LIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKFLKIYT 231 (312)
Q Consensus 167 ~~----~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~ 231 (312)
++ .|+.|++||+++...... ...+....+....|++++++|++++ .|+.|++||+.+++.+....
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 54 478999999987543222 2222334455667899999998887 59999999999888765543
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=1.5e-31 Score=212.23 Aligned_cols=281 Identities=22% Similarity=0.358 Sum_probs=239.2
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459 23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT 102 (312)
Q Consensus 23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~ 102 (312)
..+.++...|..+.++||+.|..+.++|....+.+..+.||...|+++.++|+...+++++.|..|++|...... ....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPTS 298 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cccc
Confidence 477888888887899999999999999999999999999999999999999999999999999999999876543 3455
Q ss_pred eecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee--cCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459 103 LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA--HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE 180 (312)
Q Consensus 103 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 180 (312)
...|..+|..+..+|.+++|++++.||+.-+.|++++..+..... ....+++.+|+|||..|.+|..|+.+++||+.+
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 677999999999999999999999999999999999987765543 234589999999999999999999999999998
Q ss_pred CceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCe
Q 021459 181 GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC 260 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 260 (312)
......+.+ +...+..+.|+.+|-+|+++..|+.|++||++..+..+.+...... .+......+.|.+|+.++.|=+
T Consensus 379 ~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~--~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 379 QTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK--EVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred ccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc--cceeEEEcCCCCeEEeecceeE
Confidence 887777655 6778999999999999999999999999999998877777654432 2222333467899999988877
Q ss_pred EEEEEC--CchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 261 VYVWDL--QQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 261 i~iwd~--~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
|++++- .+.+.+..+..|.+...++.|..+.++++++|.| ..++++-
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd--~~l~~~a 504 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMD--AILRLYA 504 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeecccceEEeeccch--hheEEee
Confidence 777764 3567788888899899999999999999999976 4677654
No 73
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-32 Score=208.95 Aligned_cols=293 Identities=22% Similarity=0.403 Sum_probs=236.2
Q ss_pred eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459 12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW 91 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w 91 (312)
.+..+.+.||++.|-.++-....+.+.+++.|.+.++|.++++.++..+.+|.+.|+++.|++.+.++++++.|++..||
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 35566789999999999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred eC----CCC-----------------------------------ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEE
Q 021459 92 DA----RTP-----------------------------------FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIR 132 (312)
Q Consensus 92 d~----~~~-----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 132 (312)
.. +.+ ..++..+.+|.+.|.++.|-..++.++++++|.+-.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 62 000 012345778999999999999999999999999999
Q ss_pred EEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec
Q 021459 133 IWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL 212 (312)
Q Consensus 133 ~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
+||++++..+..+.+|....+.+.-+|..+++++.+.|.+.++||.+..-.....+..+...+....|.-+ ..+++|+.
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSD 376 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSD 376 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCC
Confidence 99999999999999999999999999999999999999999999998644333333445556777778765 46889999
Q ss_pred CCeEEEEEcCCCcE-EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheee----cccCCccceEEEEE
Q 021459 213 DSTLKLWNYSAGKF-LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ----KLDGHTDSVISVTC 287 (312)
Q Consensus 213 d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~h~~~v~~l~~ 287 (312)
|.+|++||+++-+. +..+.... ..+.+..+ ..+..++.--++..|++||++...+.. .-++|...|.|++|
T Consensus 377 DrTvKvWdLrNMRsplATIRtdS-~~NRvavs---~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW 452 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIRTDS-PANRVAVS---KGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAW 452 (481)
T ss_pred CceEEEeeeccccCcceeeecCC-ccceeEee---cCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeec
Confidence 99999999987653 44443222 22223222 345578888889999999997654322 23589999999999
Q ss_pred cCCC--ceEEEeeecCCeeEEEEeec
Q 021459 288 HPTE--NKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 288 ~p~~--~~l~~~~~dgd~~v~iw~~~ 311 (312)
..+. +-|.++|+| .++.-|.++
T Consensus 453 ~eehp~cnLftcGFD--R~v~gW~in 476 (481)
T KOG0300|consen 453 LEEHPACNLFTCGFD--RMVAGWKIN 476 (481)
T ss_pred cccCccccccccccc--ceeeeeEec
Confidence 6443 568889977 688889874
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.5e-33 Score=207.71 Aligned_cols=248 Identities=27% Similarity=0.463 Sum_probs=216.9
Q ss_pred eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR 94 (312)
Q Consensus 15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~ 94 (312)
+-++.+|++.|-+..+..+..+.|+++.|-+-+|||..++..++.+. |+.-|..++|+.|.++|++|+.++.+++||++
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence 34789999999999999999999999999999999999999888765 88899999999999999999999999999999
Q ss_pred CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459 95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK 174 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
.+......+.+|.+.|..+-|-...+.++++..|++|++||.++++.++.+.. +.+|+++.++++|+++.++ ..+.|.
T Consensus 131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia-~gssV~ 208 (334)
T KOG0278|consen 131 RPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIA-YGSSVK 208 (334)
T ss_pred CCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEe-cCceeE
Confidence 88777888899999999999988888999999999999999999998888764 5689999999999876554 556899
Q ss_pred EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEE-EccCCceeEEEEEEEccCCcEEE
Q 021459 175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY-TGHTNKKYCITSTFSVTNGKYIV 253 (312)
Q Consensus 175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 253 (312)
+||..+-..++.+. -...+..+.++|+...+++|+.|..++.||+.+++.+..+ .+|..+..|+. +.|+|+..+
T Consensus 209 Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVr---FSPdGE~yA 283 (334)
T KOG0278|consen 209 FWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVR---FSPDGELYA 283 (334)
T ss_pred Eeccccccceeecc--CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEE---ECCCCceee
Confidence 99998877666553 2345777889999999999999999999999999988886 78888766653 458999999
Q ss_pred EeecCCeEEEEECCchh
Q 021459 254 SGSEDNCVYVWDLQQKT 270 (312)
Q Consensus 254 ~~~~dg~i~iwd~~~~~ 270 (312)
+|++||+|++|....++
T Consensus 284 sGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccCCCceEEEEEecCCC
Confidence 99999999999876543
No 75
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.2e-31 Score=200.02 Aligned_cols=246 Identities=22% Similarity=0.411 Sum_probs=205.2
Q ss_pred eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC--eEEEEcCCCeEEEEe
Q 021459 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH--YICSASDDRTLRIWD 92 (312)
Q Consensus 15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~~wd 92 (312)
.-.+..|..+|++++. ++.++|+|+.|.+|+|||......+..+..|.+.|+++.|.++-. .|++|++||.|.+|+
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 3456789999999997 589999999999999999999988889999999999999998764 899999999999999
Q ss_pred CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459 93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT 172 (312)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
... .+++..+++|.+.|..++.+|.+++.++.+.|+.+++||+-+|+.-....-.. ....+.|+|.|.+|+.+..+ .
T Consensus 114 ~~~-W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~-~ 190 (362)
T KOG0294|consen 114 VGS-WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGRN-K 190 (362)
T ss_pred cCC-eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEecc-E
Confidence 876 68899999999999999999999999999999999999999887655544322 23458999999999988876 6
Q ss_pred EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459 173 CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI 252 (312)
Q Consensus 173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
|-+|.+.+.....++... ..+.++.|. ++..|++|+.|+.|++||..+......+.+|......+.. +..+.+.+|
T Consensus 191 i~i~q~d~A~v~~~i~~~--~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~-~~~~~~~~l 266 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIENP--KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS-YTNPEHEYL 266 (362)
T ss_pred EEEEecccHhHhhhhhcc--ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEE-EecCCceEE
Confidence 889988877665555332 223334343 5678999999999999999888888888899887655542 344667899
Q ss_pred EEeecCCeEEEEECCch
Q 021459 253 VSGSEDNCVYVWDLQQK 269 (312)
Q Consensus 253 ~~~~~dg~i~iwd~~~~ 269 (312)
+|++.||.|++||+...
T Consensus 267 vTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDME 283 (362)
T ss_pred EEeccCceEEEEEcccc
Confidence 99999999999999765
No 76
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.9e-31 Score=226.75 Aligned_cols=248 Identities=32% Similarity=0.593 Sum_probs=211.1
Q ss_pred ceee-ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459 14 HFKT-LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92 (312)
Q Consensus 14 ~~~~-~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd 92 (312)
.+.. +.+|.+.|.++++...++.|++|+.|+++++||..++++...+.+|...|.++... ..++++|+.|.+|++|+
T Consensus 240 ~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~ 317 (537)
T KOG0274|consen 240 LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWD 317 (537)
T ss_pred EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEe
Confidence 3444 89999999999998888999999999999999999999999999999999888764 45788889999999999
Q ss_pred CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459 93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT 172 (312)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
++++ ..+..+.+|.+.|.++..+ +..+++|+.|++|++||+.++++++.+++|...|+++.+.+. ..+++|+.|+.
T Consensus 318 v~n~-~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 318 VTNG-ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT 393 (537)
T ss_pred ccCc-ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc
Confidence 9975 6677888899999999987 789999999999999999999999999999999999988654 79999999999
Q ss_pred EEEEeCCCC-ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc-CCceeEEEEEEEccCCc
Q 021459 173 CKIWDAGEG-ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH-TNKKYCITSTFSVTNGK 250 (312)
Q Consensus 173 i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (312)
|++||+++. +++..+..+. ..+.. ....+++|++++.|++|++||..+++.++.+.++ ......+. ....
T Consensus 394 IkvWdl~~~~~c~~tl~~h~-~~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~-----~~~~ 465 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHT-SLVSS--LLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALA-----LGKE 465 (537)
T ss_pred eEeecCCchhhhhhhhcCCc-ccccc--cccccceeEeccccccEEEeecccCceeeeeccCCcccEEEee-----cCcc
Confidence 999999998 7777665433 33322 3446789999999999999999999999998874 33322221 1146
Q ss_pred EEEEeecCCeEEEEECCchheeecc
Q 021459 251 YIVSGSEDNCVYVWDLQQKTMIQKL 275 (312)
Q Consensus 251 ~l~~~~~dg~i~iwd~~~~~~~~~~ 275 (312)
.+++++.||.+.+||+++++....+
T Consensus 466 ~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 466 EILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eEEEEecCCeeEEEecccCchhhhh
Confidence 7889999999999999998887765
No 77
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4e-31 Score=211.23 Aligned_cols=279 Identities=24% Similarity=0.401 Sum_probs=227.9
Q ss_pred eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceE----EE-------------e-eeccCCEEEEEEccCC
Q 021459 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALV----HR-------------F-VGHSEGISDLAWSSDS 76 (312)
Q Consensus 15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~----~~-------------~-~~~~~~v~~~~~~~~~ 76 (312)
++.+..|.-+|.+++++|+..++++++.+++|.=|++.+++.. .+ - +.|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 6677789999999999999999999999999999998776532 01 1 2677889999999999
Q ss_pred CeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEE
Q 021459 77 HYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVH 156 (312)
Q Consensus 77 ~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 156 (312)
++|++|+.|..|.||+.++. +.++.+++|.+.|.+++|-...+.+++++.|++|++|++.....+.++.+|+..|..+.
T Consensus 215 kylatgg~d~~v~Iw~~~t~-ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTL-EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred cEEEecCCCceEEEecCccc-chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999885 55777899999999999988888999999999999999998888888899999999999
Q ss_pred EccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc-cCC
Q 021459 157 FNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG-HTN 235 (312)
Q Consensus 157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~ 235 (312)
...-++.+-+|+.|+++++|++.....+ +.......+.++++-. ...+++|+.+|.|.+|++...+.+.+... |..
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~eesql--ifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEESQL--IFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred hhcccceEEeccccceeEEEecccccee--eeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 8888888888889999999999654332 2223344566666654 45789999999999999988887765432 211
Q ss_pred --------ceeEEEEEEEccCCcEEEEeecCCeEEEEECCch----heeecccCCccceEEEEEcCCCceEEEee
Q 021459 236 --------KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK----TMIQKLDGHTDSVISVTCHPTENKIASAG 298 (312)
Q Consensus 236 --------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~p~~~~l~~~~ 298 (312)
....++.....+..+++++|+.+|.|++|-+..+ +++..++ -.+.|++|+|++++.++++|-
T Consensus 371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence 1124566666688899999999999999998765 3444444 567899999999999777664
No 78
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.2e-31 Score=206.44 Aligned_cols=248 Identities=27% Similarity=0.489 Sum_probs=202.5
Q ss_pred eceeeecccccceEEEEECCCC---CEEEEEeCCCeEEEEeCCCcce----EEEeeeccCCEEEEEEccCCCeEEEEcCC
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDG---TLLASASLDKTVIIWSASSLAL----VHRFVGHSEGISDLAWSSDSHYICSASDD 85 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~---~~l~t~~~d~~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 85 (312)
+...++.+|.++|..++|.... ..+++++.|.++++|..+.+.. +....||...|.+++..+++..+++|+.|
T Consensus 135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D 214 (423)
T KOG0313|consen 135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWD 214 (423)
T ss_pred ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeeccc
Confidence 4567889999999988875333 3699999999999998876543 34446999999999999999999999999
Q ss_pred CeEEEEeCCCC------------------------ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE
Q 021459 86 RTLRIWDARTP------------------------FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC 141 (312)
Q Consensus 86 ~~v~~wd~~~~------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~ 141 (312)
.++.+|+..+. ..++.++.||.+.|.++.|.+ ...+++++.|.+|+.||+.+++.
T Consensus 215 ~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~ 293 (423)
T KOG0313|consen 215 TMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL 293 (423)
T ss_pred ceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc
Confidence 99999993210 123567889999999999987 77899999999999999999988
Q ss_pred EEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCc--eeeEcccCCCCcEEEEEECCCCC-EEEEEecCCeEEE
Q 021459 142 TRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA--CLKTLIDDKDPAVSFAKFSPNGK-FILVGTLDSTLKL 218 (312)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~v 218 (312)
...+.. ..++.++..+|...++++|+.|..+++||.+++. .....+..+..-+..+.|+|... +|++++.|+++++
T Consensus 294 ~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~kl 372 (423)
T KOG0313|consen 294 KSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKL 372 (423)
T ss_pred eeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEE
Confidence 776654 4578999999999999999999999999998753 33333333455788889999665 6778899999999
Q ss_pred EEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459 219 WNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266 (312)
Q Consensus 219 ~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 266 (312)
||++..+ .+..+.+|..+..++. + .++..+++|+.|..|+++.-
T Consensus 373 WDvRS~k~plydI~~h~DKvl~vd--W--~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 373 WDVRSTKAPLYDIAGHNDKVLSVD--W--NEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEeccCCCcceeeccCCceEEEEe--c--cCCceEEeccCcceEEEecc
Confidence 9999887 7888888877655443 2 46789999999999999864
No 79
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-30 Score=191.65 Aligned_cols=244 Identities=24% Similarity=0.445 Sum_probs=204.4
Q ss_pred eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEE
Q 021459 56 LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE 135 (312)
Q Consensus 56 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd 135 (312)
.+..+.+++++|..+.|+-+|+|.++|+.|++|++|+...+ .++++..+|...|..++.+.|+..+++|+.|..|.+||
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc-ceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 34567789999999999999999999999999999998765 67899999999999999999999999999999999999
Q ss_pred cCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCc--eeeEcccCCCCcEEEEEECCCCCEEEEEecC
Q 021459 136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA--CLKTLIDDKDPAVSFAKFSPNGKFILVGTLD 213 (312)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 213 (312)
+++|+..+.+.+|...|+.+.|+.+...+++|+.|..+++||-++.. .+..+ .+....+..+ .-.+..+++|+.|
T Consensus 88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil-dea~D~V~Si--~v~~heIvaGS~D 164 (307)
T KOG0316|consen 88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL-DEAKDGVSSI--DVAEHEIVAGSVD 164 (307)
T ss_pred cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchh-hhhcCceeEE--EecccEEEeeccC
Confidence 99999999999999999999999999999999999999999998753 23322 2222334443 3356789999999
Q ss_pred CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEE--EcCCC
Q 021459 214 STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVT--CHPTE 291 (312)
Q Consensus 214 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~--~~p~~ 291 (312)
|+++.||++.|+...-+.+++ +++....+++...+.++-|+++++-|-.++++++.++||...=..+. +....
T Consensus 165 GtvRtydiR~G~l~sDy~g~p-----it~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYFGHP-----ITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred CcEEEEEeecceeehhhcCCc-----ceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence 999999999998776666553 33334457889999999999999999999999999999976544444 45556
Q ss_pred ceEEEeeecCCeeEEEEee
Q 021459 292 NKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 292 ~~l~~~~~dgd~~v~iw~~ 310 (312)
..++++|.| +-|.+|+.
T Consensus 240 thV~sgSED--G~Vy~wdL 256 (307)
T KOG0316|consen 240 THVFSGSED--GKVYFWDL 256 (307)
T ss_pred eeEEeccCC--ceEEEEEe
Confidence 678888865 58999986
No 80
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-31 Score=199.36 Aligned_cols=242 Identities=21% Similarity=0.423 Sum_probs=198.6
Q ss_pred ccceEEEEECCC-CCEEEEEeCCCeEEEEeCCC-cceEEEeeeccCCEEEEEEcc-CCCeEEEEcCCCeEEEEeCCCCce
Q 021459 22 SRAVSCVKFSND-GTLLASASLDKTVIIWSASS-LALVHRFVGHSEGISDLAWSS-DSHYICSASDDRTLRIWDARTPFD 98 (312)
Q Consensus 22 ~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~~~~ 98 (312)
.+.+..++|++. .+.+++++.||++++||... ..++..++.|...|.++.|++ .++.+++++-|++|++|+...+ .
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~-~ 138 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP-N 138 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC-c
Confidence 567889999984 56889999999999999653 457888999999999999998 4667888899999999998765 5
Q ss_pred eeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCEEEEeeCCCeEEEE
Q 021459 99 CLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIW 176 (312)
Q Consensus 99 ~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iw 176 (312)
.+.++.+|...|....|+| .++.+++++.|+++++||++..-....+..|...+.++.|+. +...+++|+.|+.|+.|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 6788999999999999999 468999999999999999986544455889999999999998 66788999999999999
Q ss_pred eCCCCceeeEcccCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEEEE
Q 021459 177 DAGEGACLKTLIDDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYIVS 254 (312)
Q Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (312)
|+++-+.....+..+...+..+.|+|.. ..|++++.|-++++||...+. .+..+..|++-.. ..-++..++.++|+
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~--g~Dws~~~~~~vAs 296 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVC--GLDWSLFDPGQVAS 296 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEe--ccccccccCceeee
Confidence 9998654433446677889999999965 578889999999999987554 3445555555332 23344456789999
Q ss_pred eecCCeEEEEEC
Q 021459 255 GSEDNCVYVWDL 266 (312)
Q Consensus 255 ~~~dg~i~iwd~ 266 (312)
.+-|+.+++|+.
T Consensus 297 ~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 297 TGWDELLYVWNP 308 (311)
T ss_pred cccccceeeecc
Confidence 999999999984
No 81
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.2e-32 Score=209.97 Aligned_cols=281 Identities=20% Similarity=0.313 Sum_probs=223.8
Q ss_pred eeecccccceEEEEECCCC-CEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459 16 KTLTAHSRAVSCVKFSNDG-TLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR 94 (312)
Q Consensus 16 ~~~~~h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~ 94 (312)
..|.+|.+.|.|++=+|.. ..+++|+.||.|++||+...+++..++.|.+.|..|++.. ..++++++|++|+.|.++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 4578999999999999977 7899999999999999999999999999999999999987 667888999999999877
Q ss_pred CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC-EEEEeeCCCeE
Q 021459 95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS-LIVSGSHDGTC 173 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i 173 (312)
.+ .+.++.+ ...+..+.-+..++.++|+|.+ |.+||.+...++..+......+.++.|+|... .|+++..|+.|
T Consensus 138 ~~--p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsI 212 (433)
T KOG0268|consen 138 GP--PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSI 212 (433)
T ss_pred CC--cceeeec-cccccccccccccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCce
Confidence 53 3444432 2345566666667788988864 99999988888888888778899999999665 56677799999
Q ss_pred EEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEE
Q 021459 174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYI 252 (312)
Q Consensus 174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
.+||++++..++.+...- ....++|+|.+-.+++++.|..++.||.+.-. .+.++.+|... +......|.|.-+
T Consensus 213 vLyD~R~~~Pl~KVi~~m--RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA---V~dVdfsptG~Ef 287 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVILTM--RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA---VMDVDFSPTGQEF 287 (433)
T ss_pred EEEecccCCccceeeeec--cccceecCccccceeeccccccceehhhhhhcccchhhccccee---EEEeccCCCcchh
Confidence 999999988776654321 23446799988888999999999999987643 45666666554 3333445779999
Q ss_pred EEeecCCeEEEEECCchheeecc-cCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 253 VSGSEDNCVYVWDLQQKTMIQKL-DGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 253 ~~~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
++||.|.+|+||..+.+..-..+ ..-.+.|.||.|+-|.+++++||.| ++||+|..
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd--~nvRlWka 344 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD--GNVRLWKA 344 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCC--cceeeeec
Confidence 99999999999998765432222 1123579999999999999999955 69999975
No 82
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-30 Score=215.94 Aligned_cols=242 Identities=26% Similarity=0.455 Sum_probs=213.5
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeee-ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG-HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC 99 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~ 99 (312)
++..|+++.|+++|.+|+.|..+|.|.|||....+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|++.....
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 388999999999999999999999999999999888888888 99999999998 678999999999999999887655
Q ss_pred eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCEEEEe--eCCCeEEEE
Q 021459 100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLIVSG--SHDGTCKIW 176 (312)
Q Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~--~~d~~i~iw 176 (312)
...+.+|...|..+.|++|++++++|+.|+.+.|||....+.+..+..|..+|..++|+| ...+||+| +.|+.|++|
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 556888999999999999999999999999999999988888888899999999999999 55678875 468999999
Q ss_pred eCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE--ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEE
Q 021459 177 DAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG--TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS 254 (312)
Q Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (312)
|..++..+..+. ....++.+.|++..+-|+++ ..++.|.||++.+.+.+..+.+|...+.. ....|++..+++
T Consensus 374 n~~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~---la~SPdg~~i~t 448 (484)
T KOG0305|consen 374 NTNTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLY---LALSPDGETIVT 448 (484)
T ss_pred EcCCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEE---EEECCCCCEEEE
Confidence 999998887763 45678999999998777764 56789999999998888999999887433 344588999999
Q ss_pred eecCCeEEEEECCch
Q 021459 255 GSEDNCVYVWDLQQK 269 (312)
Q Consensus 255 ~~~dg~i~iwd~~~~ 269 (312)
|+.|.++++|++...
T Consensus 449 ~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 449 GAADETLRFWNLFDE 463 (484)
T ss_pred ecccCcEEeccccCC
Confidence 999999999998764
No 83
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-31 Score=221.90 Aligned_cols=284 Identities=22% Similarity=0.466 Sum_probs=230.6
Q ss_pred ccccceE---EEEEC-CCCCEEEEEeCCCeEEEEeCCCcc------eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEE
Q 021459 20 AHSRAVS---CVKFS-NDGTLLASASLDKTVIIWSASSLA------LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLR 89 (312)
Q Consensus 20 ~h~~~v~---~~~~s-~~~~~l~t~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~ 89 (312)
.|...|. .+..+ |.+++|+|||.||.|++|+..... .+.+++.|.+.|++++...+++.|+++|.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 3555666 55665 466789999999999999875421 3667888999999999999999999999999999
Q ss_pred EEeCCCCc-eeeeeeecccccEEEEEE-ecCCCEEEEeecCCcEEEEEcCCCeE--E--------EEee-ecCcCeEEEE
Q 021459 90 IWDARTPF-DCLKTLRGHSDFVFCVNF-NPQSNLIVSGSFDESIRIWEVKTGKC--T--------RVIR-AHSMPVTSVH 156 (312)
Q Consensus 90 ~wd~~~~~-~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~dg~i~~wd~~~~~~--~--------~~~~-~~~~~v~~~~ 156 (312)
+|+..... -+..++..|.+.|.|+++ .++.+.+++||.|+.|.+||++++.. + ..+. ++..+|++++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 99987643 567788899999999999 78888999999999999999997732 1 1222 5677899999
Q ss_pred EccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCc
Q 021459 157 FNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK 236 (312)
Q Consensus 157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 236 (312)
-.+.|..+++|+..+.+++||.++.+.+..+.+ +...+..+..++||..+++++.||+|++||+..++++.++..|...
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG-HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG-HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred cCCcceEEEecCcccceEEeccccccceeeeec-cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 999999999999999999999999988877764 5567888889999999999999999999999999999999999887
Q ss_pred eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 237 KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
.+.+.+. ++-..+.+|+.||.|..=|+++......+.....+|..+..+.+.+.+=+++.| ..|+=|.
T Consensus 258 VWaL~~~---~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtd--s~I~rW~ 325 (735)
T KOG0308|consen 258 VWALQSS---PSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTD--SSIKRWK 325 (735)
T ss_pred eEEEeeC---CCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeecc--ccceecC
Confidence 6655443 566789999999999999998864444444456677777777655554444544 3566664
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.8e-30 Score=194.97 Aligned_cols=242 Identities=23% Similarity=0.421 Sum_probs=199.9
Q ss_pred EEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCC--EEEEeecCCcEEEE
Q 021459 57 VHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN--LIVSGSFDESIRIW 134 (312)
Q Consensus 57 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~~w 134 (312)
+..+..|..+|++++. ++.++++|+.|-+|++||+... ..+..+-.|.+.|.++.|.+... .|++|+.||.|.+|
T Consensus 36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~-~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKR-KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccccceeEEEe--cceeEeccCCCCcEEEEeccch-hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 4566789999999998 5889999999999999999874 44666777999999999998764 89999999999999
Q ss_pred EcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC
Q 021459 135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS 214 (312)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
+...-.++..+++|...|+.++.+|.+++-++.+.|+.+++||+-+++.-....-.+ ....+.|+|.|.+++.+..+
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~- 189 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGRN- 189 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEecc-
Confidence 999889999999999999999999999999999999999999998887544332222 23447899999998888765
Q ss_pred eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEE--cCCCc
Q 021459 215 TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTC--HPTEN 292 (312)
Q Consensus 215 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~p~~~ 292 (312)
.|-+|.+.+......+... ....|+. ..++..|++|.+|+.|.+||.........+.+|...|..+.+ .|.+.
T Consensus 190 ~i~i~q~d~A~v~~~i~~~-~r~l~~~----~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIENP-KRILCAT----FLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred EEEEEecccHhHhhhhhcc-ccceeee----ecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCce
Confidence 5888988766554433322 2233332 246789999999999999999988888999999999999984 57788
Q ss_pred eEEEeeecCCeeEEEEeec
Q 021459 293 KIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 293 ~l~~~~~dgd~~v~iw~~~ 311 (312)
+|+|+|.| +.|++|+++
T Consensus 265 ~lvTaSSD--G~I~vWd~~ 281 (362)
T KOG0294|consen 265 YLVTASSD--GFIKVWDID 281 (362)
T ss_pred EEEEeccC--ceEEEEEcc
Confidence 99999966 489999985
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-30 Score=208.62 Aligned_cols=243 Identities=25% Similarity=0.463 Sum_probs=199.9
Q ss_pred eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCC
Q 021459 17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDART 95 (312)
Q Consensus 17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~ 95 (312)
++.-.++.|.++.|..||+++|.|+..|.|+|+|..+...+..+.+|+.+|..+.|+|+ +..+++|++|+.+++||+.+
T Consensus 63 ~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 63 TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 34456788999999999999999999999999997766666778899999999999996 56888999999999999988
Q ss_pred CceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459 96 PFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK 174 (312)
Q Consensus 96 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
... ...+.+|.+.|.|.+++|.. +.++||++||.|++||++.......--.|..||..+.+-|.|..+++++.+ .++
T Consensus 143 a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vk 220 (487)
T KOG0310|consen 143 AYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN-SVK 220 (487)
T ss_pred cEE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEE
Confidence 653 55788999999999999965 579999999999999999874322223589999999999999999988765 899
Q ss_pred EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEE
Q 021459 175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS 254 (312)
Q Consensus 175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (312)
+||+-+|.........+...++++++..++..|++++.|+.|++||..+-+.+..+.-. .+ +......+++..++.
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~-~p---vLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP-GP---VLSIAVSPDDQTVVI 296 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc-cc---eeeEEecCCCceEEE
Confidence 99998665544444446677999999999999999999999999998777777665532 22 333344578889999
Q ss_pred eecCCeEEEEE
Q 021459 255 GSEDNCVYVWD 265 (312)
Q Consensus 255 ~~~dg~i~iwd 265 (312)
|-.||.+.+=+
T Consensus 297 GmsnGlv~~rr 307 (487)
T KOG0310|consen 297 GMSNGLVSIRR 307 (487)
T ss_pred ecccceeeeeh
Confidence 99999887763
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=3.2e-28 Score=178.44 Aligned_cols=286 Identities=24% Similarity=0.397 Sum_probs=223.6
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC------c---------ceEEEeeeccCCEEEEEEccCCCeEEEEc
Q 021459 19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS------L---------ALVHRFVGHSEGISDLAWSSDSHYICSAS 83 (312)
Q Consensus 19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~------~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 83 (312)
-.-...|.+++|+|.|.+-+.|++.+++||-.... . -+..+.+.|.+.|++.+|+|+|++|++|+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 34567899999999999999999999999864321 1 11234456889999999999999999999
Q ss_pred CCCeEEEEeCCCCce----eeeeeecccccEEEEEEecC----CCEEEEeec-CCcEEEEEcCCCeEEEEeeecCcCeEE
Q 021459 84 DDRTLRIWDARTPFD----CLKTLRGHSDFVFCVNFNPQ----SNLIVSGSF-DESIRIWEVKTGKCTRVIRAHSMPVTS 154 (312)
Q Consensus 84 ~d~~v~~wd~~~~~~----~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~ 154 (312)
.|+.|++.-.+...- .-..+.-|++.|..++|-.+ +..|++++. |-.|++-|...|+....+.+|..-|..
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila 188 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA 188 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence 999999975543111 11234458899999999654 346666553 445777788899999999999988877
Q ss_pred EEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccC------CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459 155 VHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDD------KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK 228 (312)
Q Consensus 155 ~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 228 (312)
+ ++=++-.+++|+.|.+|++||++-..++..+-.. ....+..++.+|.|++|++|-.|....+||++.++.+.
T Consensus 189 l-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq 267 (350)
T KOG0641|consen 189 L-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ 267 (350)
T ss_pred E-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee
Confidence 6 3446789999999999999999988777655332 12467788999999999999999999999999999999
Q ss_pred EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch---he-eecccCCccceEEEEEcCCCceEEEeeecCCee
Q 021459 229 IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK---TM-IQKLDGHTDSVISVTCHPTENKIASAGLDGDRT 304 (312)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~-~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~ 304 (312)
.+..|.....|+ .+.|...+|++++.|..|++-|++.. ++ +.....|.+.+..+.|||..-.+++.+.| .+
T Consensus 268 ~f~phsadir~v---rfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssad--kt 342 (350)
T KOG0641|consen 268 RFHPHSADIRCV---RFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSAD--KT 342 (350)
T ss_pred eeCCCccceeEE---EeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCc--ce
Confidence 998888775555 34467789999999999999998642 11 22345688999999999999888888855 68
Q ss_pred EEEEee
Q 021459 305 VRVWVQ 310 (312)
Q Consensus 305 v~iw~~ 310 (312)
+-+|-.
T Consensus 343 ~tlwa~ 348 (350)
T KOG0641|consen 343 ATLWAL 348 (350)
T ss_pred EEEecc
Confidence 888865
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=8.8e-30 Score=202.27 Aligned_cols=252 Identities=21% Similarity=0.341 Sum_probs=209.1
Q ss_pred eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459 12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW 91 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w 91 (312)
.+.+.++.||...|+.+.|+|+...+++++.|..|+||.............|.++|+.+..+|.|.||++++.|+...+.
T Consensus 251 ~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fs 330 (506)
T KOG0289|consen 251 NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFS 330 (506)
T ss_pred hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEE
Confidence 35567889999999999999999999999999999999988776667778899999999999999999999999999999
Q ss_pred eCCCCceeeeeee-cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459 92 DARTPFDCLKTLR-GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD 170 (312)
Q Consensus 92 d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
|++++....+... ...-.+.+.+|+|||..|.+|..||.|++||+.++.....|.+|..+|..++|+.+|-+++++..|
T Consensus 331 d~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add 410 (506)
T KOG0289|consen 331 DISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD 410 (506)
T ss_pred EccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC
Confidence 9988754333221 122357899999999999999999999999999999888999999999999999999999999999
Q ss_pred CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE--EEEEEccCCceeEEEEEEEccC
Q 021459 171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF--LKIYTGHTNKKYCITSTFSVTN 248 (312)
Q Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
+.|++||+|.-+..+++.......+..+.|++.|.+|+.++.|=+|++++-.+... +..+..|.+...+ ..+...
T Consensus 411 ~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~---v~Fg~~ 487 (506)
T KOG0289|consen 411 GSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTG---VRFGEH 487 (506)
T ss_pred CeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccce---eeeccc
Confidence 99999999988877777665555677888999999999998887777776544443 3334444433222 333456
Q ss_pred CcEEEEeecCCeEEEEEC
Q 021459 249 GKYIVSGSEDNCVYVWDL 266 (312)
Q Consensus 249 ~~~l~~~~~dg~i~iwd~ 266 (312)
..++++++.|..++++-+
T Consensus 488 aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 488 AQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceEEeeccchhheEEeec
Confidence 678999999998888754
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.9e-29 Score=210.90 Aligned_cols=282 Identities=26% Similarity=0.441 Sum_probs=229.1
Q ss_pred ceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceE--EEeeeccCCEEE-EEEcc-CCCeEEEEcCCC
Q 021459 11 PYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALV--HRFVGHSEGISD-LAWSS-DSHYICSASDDR 86 (312)
Q Consensus 11 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~-~~~~~-~~~~l~~~~~d~ 86 (312)
.|+....+.+|+..|..++..+. ..++++|.||++++|+-...+.+ +.+.+|.+-|.. +++.+ ++-.|++|+.|.
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred cceeEEEeccCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 46777889999999999887654 47889999999999987665543 346667777765 88876 455699999999
Q ss_pred eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459 87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS 166 (312)
Q Consensus 87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
.+.+|..... .++..+++|...|.|++...++. +++||+|.++++|-. +++...+++|..+|+.++.-|.+ .+++
T Consensus 82 ~i~v~~~~~~-~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vT 156 (745)
T KOG0301|consen 82 TIIVFKLSQA-EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVT 156 (745)
T ss_pred eEEEEecCCC-CchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEe
Confidence 9999998764 56788999999999999877776 999999999999965 44556689999999999999987 7899
Q ss_pred eeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459 167 GSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246 (312)
Q Consensus 167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
|+.|.+|++|.- ++.++++.+ |...+..+++-+++ .+++++.||.|+.|++ +++.+..+.+|+...+++.. .
T Consensus 157 gsaDKtIklWk~--~~~l~tf~g-HtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~---~ 228 (745)
T KOG0301|consen 157 GSADKTIKLWKG--GTLLKTFSG-HTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM---A 228 (745)
T ss_pred ccCcceeeeccC--Cchhhhhcc-chhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEe---c
Confidence 999999999975 566667665 55667777777765 4678889999999998 78888889999988887762 3
Q ss_pred cCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 247 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
.++..++++++|++++||+.. ++.+.+.-....|+++.+-++| -+++|+.| +.||||-.+
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~Ng-DIvvg~SD--G~VrVfT~~ 288 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNG-DIVVGGSD--GRVRVFTVD 288 (745)
T ss_pred CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCC-CEEEeccC--ceEEEEEec
Confidence 567799999999999999876 6666666556689999998876 56667755 589999764
No 89
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3e-28 Score=210.37 Aligned_cols=225 Identities=17% Similarity=0.274 Sum_probs=172.5
Q ss_pred EcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCe--------EEEEeeecCcCe
Q 021459 82 ASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGK--------CTRVIRAHSMPV 152 (312)
Q Consensus 82 ~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~--------~~~~~~~~~~~v 152 (312)
|+.++.+++|+.... ..+..+.+|.+.|.+++|+|+ +++|++|+.|++|++||+.++. ....+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~-~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCC-ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 566788999987653 456778899999999999997 7899999999999999997642 234567899999
Q ss_pred EEEEEccCCCE-EEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459 153 TSVHFNRDGSL-IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT 231 (312)
Q Consensus 153 ~~~~~~~~~~~-l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 231 (312)
.+++|+|++.. +++++.|+.|++||+++++....+. +...+..+.|+|+|.+|++++.|+.|++||+++++.+..+.
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 99999998875 4689999999999999887665553 23568889999999999999999999999999999888888
Q ss_pred ccCCceeEEEE--EEEccCCcEEEEeecCC----eEEEEECCc-hheeeccc--CCccceEEEEEcCCCceEEEeeecCC
Q 021459 232 GHTNKKYCITS--TFSVTNGKYIVSGSEDN----CVYVWDLQQ-KTMIQKLD--GHTDSVISVTCHPTENKIASAGLDGD 302 (312)
Q Consensus 232 ~~~~~~~~~~~--~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~--~h~~~v~~l~~~p~~~~l~~~~~dgd 302 (312)
+|......... ....+++.+|++++.|+ .|+|||++. ...+..+. .+.+.+.-.-..+++.++++|+ ||
T Consensus 207 gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk--GD 284 (568)
T PTZ00420 207 IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK--GD 284 (568)
T ss_pred cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE--CC
Confidence 88765322211 11235677888877664 799999985 44444432 2233333333345577888887 77
Q ss_pred eeEEEEeec
Q 021459 303 RTVRVWVQD 311 (312)
Q Consensus 303 ~~v~iw~~~ 311 (312)
++||+|++.
T Consensus 285 ~tIr~~e~~ 293 (568)
T PTZ00420 285 GNCRYYQHS 293 (568)
T ss_pred CeEEEEEcc
Confidence 899999874
No 90
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=213.92 Aligned_cols=250 Identities=25% Similarity=0.481 Sum_probs=218.4
Q ss_pred eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459 12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW 91 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w 91 (312)
.++++++..- .+.+..|-|.++++++|..+|.+.+||+....++..++.|.+.|.+++.+||+..+++|+.|.+|++|
T Consensus 404 ~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 404 LKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred cceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEE
Confidence 4566666544 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCC-------ceee-----eeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc
Q 021459 92 DARTP-------FDCL-----KTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR 159 (312)
Q Consensus 92 d~~~~-------~~~~-----~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (312)
|..-. .+.+ +++ .-.+.|.|++++||+++|+.+=.|.+|++|-+.+-+....+-+|.-||.|+.++|
T Consensus 482 df~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~ 560 (888)
T KOG0306|consen 482 DFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP 560 (888)
T ss_pred eEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC
Confidence 86311 0111 111 1346799999999999999999999999999999988888999999999999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeE
Q 021459 160 DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC 239 (312)
Q Consensus 160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 239 (312)
|+++++||+.|..|++|-+.=|.+-+.+..+.+ .+..+.|-|....+.+++.|+.|+.||-..-+.+..+.+|....+|
T Consensus 561 DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD-Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~c 639 (888)
T KOG0306|consen 561 DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD-SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWC 639 (888)
T ss_pred CcCeEEeccCCCceEEeccccchhhhhhhcccC-ceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeee
Confidence 999999999999999999988888888876554 5667889999999999999999999998888888999999988887
Q ss_pred EEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459 240 ITSTFSVTNGKYIVSGSEDNCVYVWDLQQ 268 (312)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 268 (312)
... .++|.++++++.|..|++|.-..
T Consensus 640 Lav---~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 640 LAV---SPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eEE---cCCCCeEEeccCCceeEeeeccC
Confidence 754 47899999999999999997543
No 91
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=8e-29 Score=208.20 Aligned_cols=282 Identities=18% Similarity=0.314 Sum_probs=222.1
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCcce---EEEeeeccCCEEEEEEccC-----------CCeEEEEcCCCeEEEE
Q 021459 26 SCVKFSNDGTLLASASLDKTVIIWSASSLAL---VHRFVGHSEGISDLAWSSD-----------SHYICSASDDRTLRIW 91 (312)
Q Consensus 26 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~---~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~d~~v~~w 91 (312)
-++.|++....|.....|..++|||+...+. ...+.-|...|+++.--|. ...+.+|+.|++|++|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 4678999999999999999999999876543 3445568888888765441 2257899999999999
Q ss_pred eCCCCc--ee----------eee------------------------eecccccEEEEEEecCCCEEEEeecCCcEEEEE
Q 021459 92 DARTPF--DC----------LKT------------------------LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE 135 (312)
Q Consensus 92 d~~~~~--~~----------~~~------------------------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd 135 (312)
|+.... .. ++. .-...-.+.+++.+|++++|++|...|.+++||
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 986310 00 000 001123478999999999999999999999999
Q ss_pred cCCCeEEEEeeecCcCeEEEEEcc---CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCC--------------------
Q 021459 136 VKTGKCTRVIRAHSMPVTSVHFNR---DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD-------------------- 192 (312)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------------------- 192 (312)
+.+-+....+++|...|.|+.++. ..++|++++.|..|.++|...+..+......+.
T Consensus 488 Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Misc 567 (1080)
T KOG1408|consen 488 LQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISC 567 (1080)
T ss_pred ehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEec
Confidence 998888888899999999999986 346899999999999999865432211111111
Q ss_pred -----------------------------CcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce-eEEEE
Q 021459 193 -----------------------------PAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK-YCITS 242 (312)
Q Consensus 193 -----------------------------~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-~~~~~ 242 (312)
..+..+...|+.+++++++.|..|+|||.++++..+.+++..... ..+.
T Consensus 568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIK- 646 (1080)
T KOG1408|consen 568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIK- 646 (1080)
T ss_pred cCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEE-
Confidence 112335678899999999999999999999999999998765442 2333
Q ss_pred EEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 243 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
....|.+-++++...|.++.++|..+++++.+..||...|+.+.|.+|-+.|++++ ||+.|.||.+
T Consensus 647 v~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvs--gDgCIFvW~l 712 (1080)
T KOG1408|consen 647 VILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVS--GDGCIFVWKL 712 (1080)
T ss_pred EEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeec--CCceEEEEEC
Confidence 34457899999999999999999999999999999999999999999999999999 6779999986
No 92
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.8e-30 Score=199.60 Aligned_cols=248 Identities=27% Similarity=0.444 Sum_probs=212.6
Q ss_pred eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee-eccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDDRTLRIW 91 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w 91 (312)
+.-..+.-|.++|.|+.||.|...||+|+.||.|+||.+.++.++.++. .|+.+|+++.|+.|+..+++++.|.++++-
T Consensus 254 QAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiH 333 (508)
T KOG0275|consen 254 QAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIH 333 (508)
T ss_pred hhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEe
Confidence 3344566789999999999999999999999999999999999998886 899999999999999999999999999999
Q ss_pred eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec--CcCeEEEEEcc-CCCEEEEee
Q 021459 92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH--SMPVTSVHFNR-DGSLIVSGS 168 (312)
Q Consensus 92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~~~-~~~~l~~~~ 168 (312)
-+..+ ++++.++||.+.|....|.+||+.+++++.||+|++|+.++.+|+.+++.. ..+|.++..-| +.+.++++.
T Consensus 334 GlKSG-K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 334 GLKSG-KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred ccccc-hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence 98875 678999999999999999999999999999999999999999998888643 45677777766 567899999
Q ss_pred CCCeEEEEeCCCCceeeEcccC--CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459 169 HDGTCKIWDAGEGACLKTLIDD--KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246 (312)
Q Consensus 169 ~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
..+++.+.++. |+.++.+... .+...-.+..+|.|.++.+.+.|+.++.|...+|+..+.+..|......+ . ..
T Consensus 413 rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl--~-HH 488 (508)
T KOG0275|consen 413 RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGL--T-HH 488 (508)
T ss_pred CCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccccc--c-cC
Confidence 99999999874 6667666433 23445566799999999999999999999999999888887776653322 2 33
Q ss_pred cCCcEEEEeecCCeEEEEE
Q 021459 247 TNGKYIVSGSEDNCVYVWD 265 (312)
Q Consensus 247 ~~~~~l~~~~~dg~i~iwd 265 (312)
|..++||+-++||.+++|.
T Consensus 489 PHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 489 PHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccchhhhhcccchhhhcC
Confidence 5577899999999999994
No 93
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=1.3e-29 Score=204.91 Aligned_cols=279 Identities=22% Similarity=0.370 Sum_probs=225.2
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc---ceEEEeee--ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL---ALVHRFVG--HSEGISDLAWSSDSHYICSASDDRTLRIWDAR 94 (312)
Q Consensus 20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~---~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~ 94 (312)
.|...|.++.+|...+.+.||+. |-|+|||+... ..+..+.. ....|.++...|||+.|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 68888999999999999999987 68999998642 22222322 34568899999999999999999999999998
Q ss_pred CCceeeee-eecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459 95 TPFDCLKT-LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC 173 (312)
Q Consensus 95 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 173 (312)
.+...++. +....-...+++.+||.+.++++..||.|.|||+.+...++.+++|...+.|+.+++||..|-+|+-|+++
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 76544432 22222356678899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEE
Q 021459 174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIV 253 (312)
Q Consensus 174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (312)
+.||++++..+.+. +....+..+..+|++.+|++|-.++.+.+......+.... |. ...|+....+.+-|++++
T Consensus 576 RcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyql---hl-heScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 576 RCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQL---HL-HESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEecCCccceee---cc-cccEEEEEEecccCceee
Confidence 99999998765432 3456677888999999999999999999887655443222 22 224566666667899999
Q ss_pred EeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEE
Q 021459 254 SGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306 (312)
Q Consensus 254 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~ 306 (312)
+.+.|+.+..|...-+..+...+ ...+|++...+.+.++++|||.|...+|+
T Consensus 650 StGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEE
Confidence 99999999999988777776655 36789999999999999999965545543
No 94
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1e-28 Score=187.80 Aligned_cols=240 Identities=23% Similarity=0.346 Sum_probs=181.2
Q ss_pred ccCCEEEEEEcc-CCCeEEEEcCCCeEEEEeCCCC-ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe
Q 021459 63 HSEGISDLAWSS-DSHYICSASDDRTLRIWDARTP-FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK 140 (312)
Q Consensus 63 ~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~ 140 (312)
..+.|.+|+|+| ...+++++|.|++||+|+++.. ....+....|.+++.+++|+.||..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 457899999999 4567778999999999999763 22234556789999999999999999999999999999999996
Q ss_pred EEEEeeecCcCeEEEEEccCCC--EEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEE
Q 021459 141 CTRVIRAHSMPVTSVHFNRDGS--LIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKL 218 (312)
Q Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 218 (312)
...+..|..+|.++.|-+... .|++|+.|.+++.||++....+.++... +.+..+ +--..+++++..+..|.+
T Consensus 106 -~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eRvYa~--Dv~~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 106 -VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ERVYAA--DVLYPMAVVATAERHIAV 180 (347)
T ss_pred -eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ceeeeh--hccCceeEEEecCCcEEE
Confidence 456778999999999988665 8999999999999999987776655332 122222 223457888999999999
Q ss_pred EEcCCCcEE-EEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch--heeecccCCc---------cceEEEE
Q 021459 219 WNYSAGKFL-KIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK--TMIQKLDGHT---------DSVISVT 286 (312)
Q Consensus 219 ~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~h~---------~~v~~l~ 286 (312)
|+++++... +..... -.+.+.+.....+.+..+.|+-+|++.+..+... ..-..++.|. -.|++|+
T Consensus 181 ynL~n~~te~k~~~Sp--Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESP--LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEcCCCcchhhhhcCc--ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 999776432 222221 1122222223345556689999999999988764 3333444453 2689999
Q ss_pred EcCCCceEEEeeecCCeeEEEEeec
Q 021459 287 CHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 287 ~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
|||..+.|+|+| +|++.-+||.|
T Consensus 259 FhP~hgtlvTaG--sDGtf~FWDkd 281 (347)
T KOG0647|consen 259 FHPVHGTLVTAG--SDGTFSFWDKD 281 (347)
T ss_pred eecccceEEEec--CCceEEEecch
Confidence 999999999999 45699999975
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=8.6e-29 Score=184.67 Aligned_cols=237 Identities=24% Similarity=0.431 Sum_probs=196.7
Q ss_pred EEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeee--eeecccccEEEEEEec-CCCEEEEeecCCcEEEE
Q 021459 58 HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLK--TLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIW 134 (312)
Q Consensus 58 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~--~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~w 134 (312)
..+++|...|.+++|+.+|..|++|+.|+.+.+|+++.. ...+ ..++|.+.|-.++|+| ....+++++.|..|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch-hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 345678899999999999999999999999999998754 2222 3467888899999987 45789999999999999
Q ss_pred EcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC
Q 021459 135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS 214 (312)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
|++.+++..........+ .+.|+|+|+++++++.|..|.+.|.++.+...... ....+.-+.|+.++++++..+..|
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCCCEEEEecCCc
Confidence 999999988776555444 56799999999999999999999999877655432 222344456777778888777889
Q ss_pred eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceE
Q 021459 215 TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKI 294 (312)
Q Consensus 215 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l 294 (312)
.|.|..+..-+.+..++.|+..-.|+ .+ .|+|+++|+|+.|-.+.+||+.+.-+...+..+.=+|..|.|+.+|++|
T Consensus 170 ~v~ILsypsLkpv~si~AH~snCicI--~f-~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~l 246 (313)
T KOG1407|consen 170 CVEILSYPSLKPVQSIKAHPSNCICI--EF-DPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRML 246 (313)
T ss_pred eEEEEeccccccccccccCCcceEEE--EE-CCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCccee
Confidence 99999998888888899898654444 33 4789999999999999999999888888888899999999999999999
Q ss_pred EEeeecC
Q 021459 295 ASAGLDG 301 (312)
Q Consensus 295 ~~~~~dg 301 (312)
|+||.|.
T Consensus 247 ASaSEDh 253 (313)
T KOG1407|consen 247 ASASEDH 253 (313)
T ss_pred eccCccc
Confidence 9999663
No 96
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.8e-28 Score=185.65 Aligned_cols=288 Identities=21% Similarity=0.323 Sum_probs=207.2
Q ss_pred eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE----EeeeccCCEEEEEEccCCC-eEEEEcCCCeEE
Q 021459 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH----RFVGHSEGISDLAWSSDSH-YICSASDDRTLR 89 (312)
Q Consensus 15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~ 89 (312)
..+|.+|.+.|++++|+.||+.|+|++.|++|++|++....... +..-.-+..+.++|.||-+ .++++-....++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 34678999999999999999999999999999999988653211 1111123456789999865 555566666899
Q ss_pred EEeCCCCce-----------eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEc
Q 021459 90 IWDARTPFD-----------CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN 158 (312)
Q Consensus 90 ~wd~~~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~ 158 (312)
+|.+..... .+...+.|.-.+..+-....+.++++++.|..|.+|+++ |+.+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 997632110 011123455556666667778899999999999999999 88888887777777888999
Q ss_pred cCCCEEEEeeCCCeEEEEeCC---CCc-----eeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC-------
Q 021459 159 RDGSLIVSGSHDGTCKIWDAG---EGA-----CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA------- 223 (312)
Q Consensus 159 ~~~~~l~~~~~d~~i~iwd~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~------- 223 (312)
|+|+++++++..-.+++|.+- .|. ...++ ..+...+..++|+++...+++.+.||.+++||..-
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhhee-ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 999999999999999999852 222 12222 34556788899999999999999999999999632
Q ss_pred CcEEEEEE--ccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc-CCccceEEEEEcCCCceEEEeeec
Q 021459 224 GKFLKIYT--GHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD-GHTDSVISVTCHPTENKIASAGLD 300 (312)
Q Consensus 224 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~p~~~~l~~~~~d 300 (312)
.+.++... -+......+... ..|+++.|+... ...++++..++++....++ .|...|.+++|+|+|++++++|
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~-lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-- 392 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLE-LSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-- 392 (420)
T ss_pred chHhhcCCcchhhcCCCceEEE-eCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec--
Confidence 11222211 111111122222 236787777543 4569999988877766654 5889999999999999999995
Q ss_pred CCeeEEEEe
Q 021459 301 GDRTVRVWV 309 (312)
Q Consensus 301 gd~~v~iw~ 309 (312)
|..+|+..
T Consensus 393 -dr~vrv~~ 400 (420)
T KOG2096|consen 393 -DRYVRVIR 400 (420)
T ss_pred -ceeeeeec
Confidence 67788754
No 97
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.7e-29 Score=191.12 Aligned_cols=250 Identities=23% Similarity=0.409 Sum_probs=202.6
Q ss_pred eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI 90 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 90 (312)
..+++|-.|.++|+++.|+|...+|++|+.|++|++||+.... ...+......+|.++.|+|.|.+|+.|.+-..+++
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence 3478999999999999999999999999999999999997643 22334445678999999999999999999999999
Q ss_pred EeCCCCceeee---eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee-ecC-cCeEEEEEccCCCEEE
Q 021459 91 WDARTPFDCLK---TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR-AHS-MPVTSVHFNRDGSLIV 165 (312)
Q Consensus 91 wd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~-~~~-~~v~~~~~~~~~~~l~ 165 (312)
||+++. ++.. .-.+|.+.|.++.+++.+++.++++.||.|++||--+++|+.++. +|. ..|.+..|..++++++
T Consensus 243 Ydv~T~-QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiL 321 (430)
T KOG0640|consen 243 YDVNTY-QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYIL 321 (430)
T ss_pred Eeccce-eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEe
Confidence 999874 3322 224688999999999999999999999999999999999988775 564 4688999999999999
Q ss_pred EeeCCCeEEEEeCCCCceeeEcccCCC----CcEEEEEECCCCCEEEEEec-CCeEEEEEcCCCcEEEEEE-ccCCceeE
Q 021459 166 SGSHDGTCKIWDAGEGACLKTLIDDKD----PAVSFAKFSPNGKFILVGTL-DSTLKLWNYSAGKFLKIYT-GHTNKKYC 239 (312)
Q Consensus 166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~-~~~~~~~~ 239 (312)
+.+.|..+++|.+.+++.+....+... ..-+.+.|.....+++.... .+.+.-||.++...+..+. +|.+...+
T Consensus 322 sSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~ 401 (430)
T KOG0640|consen 322 SSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRW 401 (430)
T ss_pred ecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceE
Confidence 999999999999999999888765421 11223457777778776643 4678999999887665543 56665444
Q ss_pred EEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459 240 ITSTFSVTNGKYIVSGSEDNCVYVWDL 266 (312)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~dg~i~iwd~ 266 (312)
+ ...|.+..+.+++.|-.+++|--
T Consensus 402 i---~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 402 I---VHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred E---EeCCCCCceeeecccceeeeeee
Confidence 4 33467788999999999999964
No 98
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.4e-27 Score=180.21 Aligned_cols=245 Identities=23% Similarity=0.332 Sum_probs=194.2
Q ss_pred eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec--CCcEEEEEcC
Q 021459 60 FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF--DESIRIWEVK 137 (312)
Q Consensus 60 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--dg~i~~wd~~ 137 (312)
+......|.++.|+++|.+|++++.|..+++||..++ ..++++..+.-.+..++|-...+.++.++. |.+|+.-++.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g-~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG-KQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC-ceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 3335678999999999999999999999999999886 446666655566777888766677766665 7899999999
Q ss_pred CCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEE
Q 021459 138 TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLK 217 (312)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~ 217 (312)
+.+.++-+.+|...|..+..+|-+..+++++.|++|++||++..++..-+.... -..++++|.|-++|++...+.|+
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~---~pi~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG---RPIAAFDPEGLIFALANGSELIK 165 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC---CcceeECCCCcEEEEecCCCeEE
Confidence 999999999999999999999999999999999999999999776655443222 23467999999999998888999
Q ss_pred EEEcCCCc--EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccce---EEEEEcCCCc
Q 021459 218 LWNYSAGK--FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSV---ISVTCHPTEN 292 (312)
Q Consensus 218 v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v---~~l~~~p~~~ 292 (312)
+||++.-. +...+.-..............++|+.|+.....+.+++.|...+.....+.++...- ....|.|+++
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence 99998642 233333221222223334455899999999999999999999999888887765432 5667899999
Q ss_pred eEEEeeecCCeeEEEEee
Q 021459 293 KIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 293 ~l~~~~~dgd~~v~iw~~ 310 (312)
++++++. |++|.+|+.
T Consensus 246 Fvl~gs~--dg~i~vw~~ 261 (311)
T KOG1446|consen 246 FVLSGSD--DGTIHVWNL 261 (311)
T ss_pred EEEEecC--CCcEEEEEc
Confidence 9999984 469999986
No 99
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=5.1e-29 Score=196.75 Aligned_cols=247 Identities=26% Similarity=0.459 Sum_probs=204.6
Q ss_pred eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459 12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW 91 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w 91 (312)
+....+|.+-.++|+.+.|.++++.+++++.|+.+++|+.......+.+.+|++.|+++.|......+++|+.|+++++|
T Consensus 209 ~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 209 SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 34566788889999999999999999999999999999999999999999999999999998877779999999999999
Q ss_pred eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459 92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG 171 (312)
Q Consensus 92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
|+... .+.+++- ....+..+..+ ...+++|-.|+.|++||.++..+......+. .|+++..++++..+++++.|.
T Consensus 289 Dl~k~-~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDd 363 (459)
T KOG0288|consen 289 DLQKA-YCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDD 363 (459)
T ss_pred hhhhh-heecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCC
Confidence 99873 4444432 12334444443 4568899999999999999999888887766 899999999999999999999
Q ss_pred eEEEEeCCCCceeeEcccCC---CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC
Q 021459 172 TCKIWDAGEGACLKTLIDDK---DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN 248 (312)
Q Consensus 172 ~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
++.++|+++......+.... ....+.+.|||++.|+++|+.||.|+||+..+++..+.+....... .+.+..+.+.
T Consensus 364 tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~-aI~s~~W~~s 442 (459)
T KOG0288|consen 364 TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA-AITSLSWNPS 442 (459)
T ss_pred ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc-ceEEEEEcCC
Confidence 99999999877655443211 1225567899999999999999999999999999888877654442 3555556678
Q ss_pred CcEEEEeecCCeEEEE
Q 021459 249 GKYIVSGSEDNCVYVW 264 (312)
Q Consensus 249 ~~~l~~~~~dg~i~iw 264 (312)
|..|++++.++.+.+|
T Consensus 443 G~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 443 GSGLLSADKQKAVTLW 458 (459)
T ss_pred CchhhcccCCcceEec
Confidence 9999999999999999
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1e-26 Score=170.50 Aligned_cols=256 Identities=24% Similarity=0.435 Sum_probs=197.2
Q ss_pred CCCCCceeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc--ce---EEEeeeccCCEEEEEEccC----C
Q 021459 6 TPPYKPYRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL--AL---VHRFVGHSEGISDLAWSSD----S 76 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~--~~---~~~~~~~~~~v~~~~~~~~----~ 76 (312)
.+.+.|.-.++.-..|+++|.|.+|||+|++|+||++|+.|++..++.. +. -..+.-|.+.|..++|..+ +
T Consensus 73 a~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~ 152 (350)
T KOG0641|consen 73 AAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGG 152 (350)
T ss_pred cccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCc
Confidence 3455566677777889999999999999999999999999998755432 11 1346679999999999753 4
Q ss_pred CeEEEEc-CCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee--c-----
Q 021459 77 HYICSAS-DDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA--H----- 148 (312)
Q Consensus 77 ~~l~~~~-~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~----- 148 (312)
.+|++++ .|..|++=|-..+ +....+.+|.+.|.++ ++-++-.+++|+.|.+|++||++-..++.++.. |
T Consensus 153 ~il~s~gagdc~iy~tdc~~g-~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gle 230 (350)
T KOG0641|consen 153 AILASAGAGDCKIYITDCGRG-QGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLE 230 (350)
T ss_pred eEEEecCCCcceEEEeecCCC-CcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcc
Confidence 5666654 3556666666554 4466788999999877 444578899999999999999998888776532 2
Q ss_pred CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc--E
Q 021459 149 SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK--F 226 (312)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~ 226 (312)
...|..++..|.|+++++|..|...-+||++.++.+.++.. +...+.++.|+|...++++++.|..|++-|++..- .
T Consensus 231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p-hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~e 309 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP-HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHE 309 (350)
T ss_pred cceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC-CccceeEEEeCCCceEEEEecccceEEEeecccchhhc
Confidence 35689999999999999999999999999999998888754 56779999999999999999999999999986531 1
Q ss_pred --EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459 227 --LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ 267 (312)
Q Consensus 227 --~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 267 (312)
+.+...|.. ..+.+.+.+ ..--+++.+.|.++.+|-++
T Consensus 310 l~~~vv~ehkd--k~i~~rwh~-~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 310 LPIMVVAEHKD--KAIQCRWHP-QDFSFISSSADKTATLWALN 349 (350)
T ss_pred CceEEEEeccC--ceEEEEecC-ccceeeeccCcceEEEeccC
Confidence 222333433 345555554 44557788999999999764
No 101
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=3.5e-28 Score=194.23 Aligned_cols=247 Identities=26% Similarity=0.419 Sum_probs=192.2
Q ss_pred ecccccceEEEEECCCCC-EEEEEeCCCeEEEEeCCCcc----------eEEEeeeccCCEEEEEEccCC-CeEEEEcCC
Q 021459 18 LTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSLA----------LVHRFVGHSEGISDLAWSSDS-HYICSASDD 85 (312)
Q Consensus 18 ~~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 85 (312)
...|.+.|+.+++-|+.. ++|+.+..+.+.|||..... +-.++.+|...-++++|++.. -.|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 346999999999999765 67777888999999976421 223788999878899999864 488899999
Q ss_pred CeEEEEeCCCCce------eeeeeecccccEEEEEEecC-CCEEEEeecCCcEEEEEcC--CCeEEEEeeecCcCeEEEE
Q 021459 86 RTLRIWDARTPFD------CLKTLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVK--TGKCTRVIRAHSMPVTSVH 156 (312)
Q Consensus 86 ~~v~~wd~~~~~~------~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~~~v~~~~ 156 (312)
+.|++||+..... ....+.+|.+.|..++|++- ..++++++.|+.+.+||++ +.+......+|..++.|++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 9999999865322 23456789999999999985 4678999999999999999 5566667788999999999
Q ss_pred Ecc-CCCEEEEeeCCCeEEEEeCCCCce-eeEcccCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCC---------
Q 021459 157 FNR-DGSLIVSGSHDGTCKIWDAGEGAC-LKTLIDDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAG--------- 224 (312)
Q Consensus 157 ~~~-~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~--------- 224 (312)
|+| ++..||+|+.|++|++||+|+-.. +..+ ..+...+..+.|+|.. ..|++++.|+.+.+||+..-
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~-e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTF-EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceec-cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhh
Confidence 999 667888999999999999998543 4444 4456678888999975 47778899999999998531
Q ss_pred -----cEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459 225 -----KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ 267 (312)
Q Consensus 225 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 267 (312)
+.+.+..+|...+ ....+.+...-.|+++++|+.+.||...
T Consensus 359 ~dgppEllF~HgGH~~kV--~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKV--SDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccCCcceeEEecCccccc--ccccCCCCCCeEEEEecCCceEEEeecc
Confidence 1223334555443 2334455556678999999999999875
No 102
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.8e-27 Score=190.63 Aligned_cols=285 Identities=17% Similarity=0.241 Sum_probs=226.6
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCC--cceEEEeeeccCCEEEEEEccCCC-eEEEEcCCCeEEEEeCCCCc
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASS--LALVHRFVGHSEGISDLAWSSDSH-YICSASDDRTLRIWDARTPF 97 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~wd~~~~~ 97 (312)
-.++|+++.|+|...+|++|+.|+.+++|.+.. ...+..+.-...+|.+.+|.|+|+ .+++++....++.||+.+..
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 467899999999999999999999999997764 345555655678999999999998 89999999999999998743
Q ss_pred e-eeeeeeccc-ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEE
Q 021459 98 D-CLKTLRGHS-DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKI 175 (312)
Q Consensus 98 ~-~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (312)
. .++.+.++. ..+.....++++++++..+..|.|.+....+++.+..++. .+.|..+.|+.+++.+++++.+|.|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 2 233333443 3456677889999999999999999999999888777764 456899999999999999999999999
Q ss_pred EeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC------cEEEEEEccCCceeEEEEEEEccCC
Q 021459 176 WDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG------KFLKIYTGHTNKKYCITSTFSVTNG 249 (312)
Q Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (312)
||+++..+++++..+..-.-..++.++++.+||+|+..|.|.|||..+. ++++.+.. -...++...+.++.
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN---Ltt~Itsl~Fn~d~ 447 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN---LTTAITSLQFNHDA 447 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh---hheeeeeeeeCcch
Confidence 9999999999887766656677888999999999999999999996542 22222221 22345555566778
Q ss_pred cEEEEee--cCCeEEEEECCchheeecccCC---ccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 250 KYIVSGS--EDNCVYVWDLQQKTMIQKLDGH---TDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 250 ~~l~~~~--~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
.+||.+| .+..+++-.+.+.+....++.. -+.|.|++|+|.+.++|.|..+ +.|.+|.+.
T Consensus 448 qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~--grv~l~kL~ 512 (514)
T KOG2055|consen 448 QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA--GRVHLFKLH 512 (514)
T ss_pred hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC--CceeeEeec
Confidence 8877665 5678999998887777666543 3469999999999999998854 589999864
No 103
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=4.4e-27 Score=202.58 Aligned_cols=270 Identities=19% Similarity=0.312 Sum_probs=214.0
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc-ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce
Q 021459 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL-ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD 98 (312)
Q Consensus 20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~ 98 (312)
+|+..-+.++|.|+|+.|.+++.||.|++|+.... +....+.-+...|.+++. .+.+|++|+.++.|.+|....+..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCCc
Confidence 58999999999999999999999999999987665 333333336677777665 455999999999999998866432
Q ss_pred eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459 99 CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178 (312)
Q Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (312)
-..+..-.-++.+++++.+|++++.|+.|-.|++-++........+++|..+|.++.|+|++++||+.+.||.|++||+
T Consensus 89 -~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 89 -DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred -cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 1122223457889999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred CCCceeeEcccC-------CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcE
Q 021459 179 GEGACLKTLIDD-------KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY 251 (312)
Q Consensus 179 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (312)
.++...+++..- ....+..++|+|+|..+++...|+.|++|+..+.+....+........ +....+.|+|.+
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~-~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSK-FSDLQWSPNGKY 246 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccc-eEEEEEcCCCcE
Confidence 988765544221 134466788999999999999999999999888777666554332222 333455688999
Q ss_pred EEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEe
Q 021459 252 IVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASA 297 (312)
Q Consensus 252 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~ 297 (312)
||+++.||.|.|||..+.+. ......|.+++|.|+.+.+-.-
T Consensus 247 iAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred EeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEE
Confidence 99999999999999987322 2234579999999998765443
No 104
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.2e-27 Score=181.62 Aligned_cols=286 Identities=19% Similarity=0.422 Sum_probs=216.7
Q ss_pred cccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcc------eEE---------EeeeccCCEEEEEEcc-CCCeEEE
Q 021459 19 TAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLA------LVH---------RFVGHSEGISDLAWSS-DSHYICS 81 (312)
Q Consensus 19 ~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~------~~~---------~~~~~~~~v~~~~~~~-~~~~l~~ 81 (312)
..|.++|+++...+ .|+++++|+.||.|.|||+++.. ++. .-.+|..+|.++.|-| |.-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 56999999999988 78999999999999999987643 111 1136888999999998 5668888
Q ss_pred EcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCC---CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEc
Q 021459 82 ASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS---NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN 158 (312)
Q Consensus 82 ~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~ 158 (312)
++.|.++++||.++..+ ...++ -.+.|.+-+++|-. .++++|..+-.|++.|+.+|.+...+.+|...|.++.|+
T Consensus 120 sSFDhtlKVWDtnTlQ~-a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQE-AVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ccccceEEEeeccccee-eEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 99999999999987532 32332 34567777777743 367777888899999999999999999999999999999
Q ss_pred cCCCE-EEEeeCCCeEEEEeCCCC-ceeeEcc-------------cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459 159 RDGSL-IVSGSHDGTCKIWDAGEG-ACLKTLI-------------DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223 (312)
Q Consensus 159 ~~~~~-l~~~~~d~~i~iwd~~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 223 (312)
|..++ |++|+.||.|++||++.. .+...+- ..+...+..++|+.++.++++.+.|..+++|+..+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 97764 678999999999999864 2222211 12234566788999999999999999999999988
Q ss_pred CcEEEE-EE--ccCCc-eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeee
Q 021459 224 GKFLKI-YT--GHTNK-KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGL 299 (312)
Q Consensus 224 ~~~~~~-~~--~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~ 299 (312)
|+.... +- .+... ...+... . .+...++.--.++.+.++++-+++.+..+..|-..|.|.++.|+=+...++..
T Consensus 278 G~ntl~~~g~~~~n~~~~~~~~~~-~-~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~ 355 (397)
T KOG4283|consen 278 GRNTLREFGPIIHNQTTSFAVHIQ-S-MDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM 355 (397)
T ss_pred CcccccccccccccccccceEEEe-e-cccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc
Confidence 764221 10 11111 1112211 2 22334444556689999999999999999999999999999999999999886
Q ss_pred cCCeeEEEEee
Q 021459 300 DGDRTVRVWVQ 310 (312)
Q Consensus 300 dgd~~v~iw~~ 310 (312)
|+ ++.-|.+
T Consensus 356 d~--ni~~w~p 364 (397)
T KOG4283|consen 356 NG--NIYMWSP 364 (397)
T ss_pred CC--ccccccc
Confidence 64 7877765
No 105
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=9e-28 Score=210.34 Aligned_cols=255 Identities=27% Similarity=0.457 Sum_probs=201.8
Q ss_pred eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC------------------cceEEEeeeccCCEEEEEEcc
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS------------------LALVHRFVGHSEGISDLAWSS 74 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~------------------~~~~~~~~~~~~~v~~~~~~~ 74 (312)
++.-++..|.+.|+|++|+|||.+||+|+.|+.|.||.... .+....+.+|...|..++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 34456778999999999999999999999999999998662 135567889999999999999
Q ss_pred CCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecC-----
Q 021459 75 DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHS----- 149 (312)
Q Consensus 75 ~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~----- 149 (312)
++.+|++++.|++|.+||..+- +.++.+++|.+.|..+.|+|-|+++++-+.|++|++|++..-...+.+..+-
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL 218 (942)
T ss_pred CccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence 9999999999999999999885 8899999999999999999999999999999999999977655554443321
Q ss_pred -cCeEEEEEccCCCEEEEeeC----CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCC-------------CC----EE
Q 021459 150 -MPVTSVHFNRDGSLIVSGSH----DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN-------------GK----FI 207 (312)
Q Consensus 150 -~~v~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~----~l 207 (312)
.-..-+.|+|||.+|++... -..+.|.+-.+.+.-..+.++.. .+..++|+|. .+ .+
T Consensus 219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 23678999999999998643 23577887766666666666554 6788888872 11 67
Q ss_pred EEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe
Q 021459 208 LVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM 271 (312)
Q Consensus 208 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 271 (312)
|+|+.|+.|.||.....+++.... .-....+.-..+.++|..|..+|.||.|.+..+++.++
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~--~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIH--NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhh--hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 889999999999976666544332 11112233344558899999999999999999876544
No 106
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.1e-27 Score=177.93 Aligned_cols=233 Identities=21% Similarity=0.429 Sum_probs=195.2
Q ss_pred EeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC
Q 021459 59 RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT 138 (312)
Q Consensus 59 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 138 (312)
.+++|..+++.+.++.+|.+|++|+.|....+|-..++ +.+.++.||.+.|+|+..+.+.+.+++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG-erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG-ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC-ceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 46789999999999999999999999999999976665 66889999999999999999999999999999999999999
Q ss_pred CeEEEEeeecCcCeEEEEEccCCCEEEEeeC-----CCeEEEEeCCC-------CceeeEcccCCCCcEEEEEECCCCCE
Q 021459 139 GKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-----DGTCKIWDAGE-------GACLKTLIDDKDPAVSFAKFSPNGKF 206 (312)
Q Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (312)
|+.+..++. ..+|..+.|+++|++++..+. .+.|.++|++. ......+.. .+..+..+.|+|-+++
T Consensus 84 Gk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t-~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 84 GKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT-PDSKITSALWGPLGET 161 (327)
T ss_pred CcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC-CccceeeeeecccCCE
Confidence 999888764 568999999999998887654 46799999983 233333333 3456777889999999
Q ss_pred EEEEecCCeEEEEEcCCCcE-EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEE
Q 021459 207 ILVGTLDSTLKLWNYSAGKF-LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISV 285 (312)
Q Consensus 207 l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l 285 (312)
|++|..||.|.+||.+++.. +.....|... +......++..++++++.|.+-++||..+.+.++++. -..+|++.
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~---Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~a 237 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELVDSDEEHSSK---INDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTA 237 (327)
T ss_pred EEEecCCCcEEEEEcccCceeeechhhhccc---cccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccce
Confidence 99999999999999999854 4444445543 3334455788999999999999999999988888876 46799999
Q ss_pred EEcCCCceEEEee
Q 021459 286 TCHPTENKIASAG 298 (312)
Q Consensus 286 ~~~p~~~~l~~~~ 298 (312)
+++|....++.+|
T Consensus 238 aisP~~d~VilgG 250 (327)
T KOG0643|consen 238 AISPLLDHVILGG 250 (327)
T ss_pred ecccccceEEecC
Confidence 9999888887776
No 107
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=9.6e-26 Score=185.83 Aligned_cols=269 Identities=19% Similarity=0.233 Sum_probs=194.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeE-EEEcCCCeEEEEeCCCCceeeeeeecccccEEE
Q 021459 34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYI-CSASDDRTLRIWDARTPFDCLKTLRGHSDFVFC 112 (312)
Q Consensus 34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~ 112 (312)
++.+++++.|+.+++||..+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||..++ +....+..+.. +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG-EVIGTLPSGPD-PEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC-cEEEeccCCCC-ccE
Confidence 3578899999999999999888877777553 46789999999876 56678899999998875 33444443333 467
Q ss_pred EEEecCCCEEEEe-ecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC-eEEEEeCCCCceeeEcccC
Q 021459 113 VNFNPQSNLIVSG-SFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG-TCKIWDAGEGACLKTLIDD 190 (312)
Q Consensus 113 ~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~ 190 (312)
+.++|+++.++++ +.++.|++||+++++.+..+.. ...+.+++|+|++++++++..++ .+.+||..++.........
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC
Confidence 8899999877554 5689999999998877666543 23467899999999999888765 4677898877665543322
Q ss_pred CCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccC-----CceeEEEEEEEccCCcEE-EEeecCCeEEE
Q 021459 191 KDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHT-----NKKYCITSTFSVTNGKYI-VSGSEDNCVYV 263 (312)
Q Consensus 191 ~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l-~~~~~dg~i~i 263 (312)
. ....+.|+|++++|+++ ..++.|++||+.+++.+..+..+. .........+ .++++++ ++.+.++.|.+
T Consensus 157 ~--~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 Q--RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKL-TKDGKTAFVALGPANRVAV 233 (300)
T ss_pred C--CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEE-CCCCCEEEEEcCCCCeEEE
Confidence 2 23457799999988655 468999999999887766554221 1111122233 3667764 44556778999
Q ss_pred EECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 264 WDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 264 wd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
||+.+++....+. +...+.+++|+|++++|++++. .++.|++|+.+
T Consensus 234 ~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~-~~~~i~v~d~~ 279 (300)
T TIGR03866 234 VDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNG-VSNDVSVIDVA 279 (300)
T ss_pred EECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcC-CCCeEEEEECC
Confidence 9998877665543 3457899999999999887642 24689999975
No 108
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=7.8e-30 Score=214.18 Aligned_cols=254 Identities=26% Similarity=0.515 Sum_probs=218.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEE
Q 021459 34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCV 113 (312)
Q Consensus 34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~ 113 (312)
+.++......-.+++|+... +..|...|.++..-..++.+++|+.|..+.+|.+..+. .+..+.+|..+|.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-AITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-hhheeeccCCcceee
Confidence 34444455556677887653 34577788888877778899999999999999987653 355688999999999
Q ss_pred EEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCC
Q 021459 114 NFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP 193 (312)
Q Consensus 114 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 193 (312)
.|+++..++++|+.+|+|++||++..+..+.+.+|...+..+.|+|-+.+++.|+.|+.+++||.+...+.+.+.. +..
T Consensus 77 ~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~ 155 (825)
T KOG0267|consen 77 TFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-HTR 155 (825)
T ss_pred ecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-Ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998777777655 667
Q ss_pred cEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheee
Q 021459 194 AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ 273 (312)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (312)
.+..+.|+|+|++++.++.|..++|||+..|+..+.|..|......+. ..+..-++++|+.|++|++||+++.+.+.
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle---~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE---FHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc---cCchhhhhccCCCCceeeeeccceeEEee
Confidence 788999999999999999999999999999999999988877655544 23455678999999999999999999998
Q ss_pred cccCCccceEEEEEcCCCceEEEee
Q 021459 274 KLDGHTDSVISVTCHPTENKIASAG 298 (312)
Q Consensus 274 ~~~~h~~~v~~l~~~p~~~~l~~~~ 298 (312)
..+.....|.+++|+|++..+.+|-
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCc
Confidence 8888888999999999998887653
No 109
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-28 Score=204.08 Aligned_cols=230 Identities=22% Similarity=0.460 Sum_probs=194.1
Q ss_pred EEEEcc-CCCeEEEEcCCCeEEEEeCCCCce-----eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC--e
Q 021459 69 DLAWSS-DSHYICSASDDRTLRIWDARTPFD-----CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG--K 140 (312)
Q Consensus 69 ~~~~~~-~~~~l~~~~~d~~v~~wd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~--~ 140 (312)
.+..+. .+++|++|+.||.|++|+...... .+..++.|.+.|..+..-.+++.|++++.|.+|++|+...+ -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 344443 567899999999999998754322 35677889999999998889999999999999999999877 5
Q ss_pred EEEEeeecCcCeEEEEE-ccCCCEEEEeeCCCeEEEEeCCCCce--eeEc--------ccCCCCcEEEEEECCCCCEEEE
Q 021459 141 CTRVIRAHSMPVTSVHF-NRDGSLIVSGSHDGTCKIWDAGEGAC--LKTL--------IDDKDPAVSFAKFSPNGKFILV 209 (312)
Q Consensus 141 ~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~l~~ 209 (312)
+..++..|...|.|+++ .++..++++|+-|+.|.+||+.++.. +.++ .......+..++..+.|..++.
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence 77788999999999999 88889999999999999999987632 2111 1123345667788899999999
Q ss_pred EecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcC
Q 021459 210 GTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHP 289 (312)
Q Consensus 210 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p 289 (312)
|+.++.+++||.++++.+-.+.+|+....++. ..++|..+++++.||+|++||+..++++.++..|...|+++..+|
T Consensus 189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll---~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL---VNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred cCcccceEEeccccccceeeeeccccceEEEE---EcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 99999999999999998888889998755543 457899999999999999999999999999999999999999999
Q ss_pred CCceEEEeeecC
Q 021459 290 TENKIASAGLDG 301 (312)
Q Consensus 290 ~~~~l~~~~~dg 301 (312)
+-..+.+|+-||
T Consensus 266 sf~~vYsG~rd~ 277 (735)
T KOG0308|consen 266 SFTHVYSGGRDG 277 (735)
T ss_pred CcceEEecCCCC
Confidence 999999988665
No 110
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.1e-27 Score=190.01 Aligned_cols=247 Identities=24% Similarity=0.412 Sum_probs=199.1
Q ss_pred EEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee----------------eeee-ecccccEEEEEEecCC
Q 021459 57 VHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC----------------LKTL-RGHSDFVFCVNFNPQS 119 (312)
Q Consensus 57 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~----------------~~~~-~~~~~~v~~~~~~~~~ 119 (312)
...+..|..++.+++++|+..+.++++.+++|.-|++.++... .+.- ++|...+.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 3456679999999999999999999999999999998664321 1111 3788899999999999
Q ss_pred CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEE
Q 021459 120 NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAK 199 (312)
Q Consensus 120 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (312)
++|++|+.|..|.||+.++.+.++.+..|..+|.+++|-.....+++++.|+.+++|++.....+.++.++++.... +.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~-Id 293 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLG-ID 293 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceee-ec
Confidence 99999999999999999999999999999999999999988889999999999999999888777777777665444 33
Q ss_pred ECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc-C-
Q 021459 200 FSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD-G- 277 (312)
Q Consensus 200 ~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~- 277 (312)
....++.+-+|+.|.++++|++... ...++.++.....|+.+ -+...+++|+.||.|.+|++....++.... +
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~----In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AH 368 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAF----INDEHFVSGSDNGSIALWSLLKKKPLFTSRLAH 368 (479)
T ss_pred hhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEE----ecccceeeccCCceEEEeeecccCceeEeeccc
Confidence 4445677777889999999999443 33456666555445433 356789999999999999997766554321 1
Q ss_pred ----------CccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 278 ----------HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 278 ----------h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
+..+|++|+.-|....+++||.+ +.||+|...
T Consensus 369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~--G~vrLW~i~ 410 (479)
T KOG0299|consen 369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWS--GCVRLWKIE 410 (479)
T ss_pred cccCCccccccccceeeeEecccCceEEecCCC--CceEEEEec
Confidence 22389999999999999999955 699999863
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.5e-28 Score=178.77 Aligned_cols=249 Identities=25% Similarity=0.403 Sum_probs=190.8
Q ss_pred eeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc--eeeeeeecccccEEEEEEec--CCCEEEEeecCCcEEEEEc
Q 021459 61 VGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF--DCLKTLRGHSDFVFCVNFNP--QSNLIVSGSFDESIRIWEV 136 (312)
Q Consensus 61 ~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~~wd~ 136 (312)
..|.+.|.++...-.|+.|++|+.|++|+|+.+++.. ..+..+.||.++|..++|.. .|++|+++++||.|.+|.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 3588888888887789999999999999999987654 56778999999999999964 7899999999999999998
Q ss_pred CCCeEE--EEeeecCcCeEEEEEccC--CCEEEEeeCCCeEEEEeCCCC--ceeeEcccCCCCcEEEEEECCC---C---
Q 021459 137 KTGKCT--RVIRAHSMPVTSVHFNRD--GSLIVSGSHDGTCKIWDAGEG--ACLKTLIDDKDPAVSFAKFSPN---G--- 204 (312)
Q Consensus 137 ~~~~~~--~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~---~--- 204 (312)
.+++-. .....|...|++++|.|. |-.|++++.||.|.+.+.++. .....+...+...+..++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 877432 345678999999999985 568899999999999887654 2233344445556677778775 4
Q ss_pred --------CEEEEEecCCeEEEEEcCCCcE--EEEEEccCCceeEEEEEEEcc-CCcEEEEeecCCeEEEEECCchh---
Q 021459 205 --------KFILVGTLDSTLKLWNYSAGKF--LKIYTGHTNKKYCITSTFSVT-NGKYIVSGSEDNCVYVWDLQQKT--- 270 (312)
Q Consensus 205 --------~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~--- 270 (312)
+.|++|+-|+.|+||+..+++. .+.+.+|.+-...+..+.... ....||+++.||.|.||-.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 5699999999999999988643 234667765433332221111 12479999999999999765221
Q ss_pred eeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 271 MIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 271 ~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
....++.....+.++.|++.|+.|+.++ ||+.|.+|..+
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~--GdNkvtlwke~ 286 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSG--GDNKVTLWKEN 286 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEec--CCcEEEEEEeC
Confidence 1223444667899999999999999988 78899999864
No 112
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.4e-27 Score=189.52 Aligned_cols=247 Identities=20% Similarity=0.385 Sum_probs=192.3
Q ss_pred eccCCEEEEEEccCC-CeEEEEcCCCeEEEEeCCCCce---------eeeeeecccccEEEEEEecCC-CEEEEeecCCc
Q 021459 62 GHSEGISDLAWSSDS-HYICSASDDRTLRIWDARTPFD---------CLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDES 130 (312)
Q Consensus 62 ~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~wd~~~~~~---------~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~ 130 (312)
.|.+.|+.+.+.|+. .++++.+..+.++|||...... .-..+.+|.+.-..++|++.. -.+++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 488899999999976 4677778889999999754211 112577888877889999865 47899999999
Q ss_pred EEEEEcCCCeE-------EEEeeecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCCC-ceeeEcccCCCCcEEEEEEC
Q 021459 131 IRIWEVKTGKC-------TRVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEG-ACLKTLIDDKDPAVSFAKFS 201 (312)
Q Consensus 131 i~~wd~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~ 201 (312)
|.+||+..... ...+..|...|..++|++ +..+|++++.|+.+.|||+|++ .........+...+.+++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 99999975432 346778999999999999 5568899999999999999963 12222334456778999999
Q ss_pred CC-CCEEEEEecCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch----------
Q 021459 202 PN-GKFILVGTLDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK---------- 269 (312)
Q Consensus 202 ~~-~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------- 269 (312)
|- +..||+|+.|++|++||+|+-+ .+..+.+|.....++ .+++.....||+.+.|+.+.+||+..-
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V--~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQV--EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEE--EeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 95 4577888999999999998764 467788888776555 567778889999999999999999542
Q ss_pred ----heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 270 ----TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 270 ----~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
+++..-.||...|..+.|+|...++++.- ..|+.+.||++.
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv-aeDN~LqIW~~s 404 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV-AEDNILQIWQMA 404 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCCCeEEEEe-cCCceEEEeecc
Confidence 22344568999999999999988765332 246899999974
No 113
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.2e-26 Score=191.50 Aligned_cols=288 Identities=21% Similarity=0.295 Sum_probs=217.7
Q ss_pred eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC--eEEEEcCCCeEE
Q 021459 12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH--YICSASDDRTLR 89 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~ 89 (312)
..+...+.+|++.|.++...|.|.+|++|+.||+++||.+.++.++..+. ..+.|.+++|+|.+. .||++- ...+.
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ 467 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVL 467 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceE
Confidence 44555678999999999999999999999999999999999999988765 456899999999764 455443 33344
Q ss_pred EEeCCCC------------------------------------ceeeeeeecccccEEEEEEecCCCEEEEeecC---Cc
Q 021459 90 IWDARTP------------------------------------FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD---ES 130 (312)
Q Consensus 90 ~wd~~~~------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~ 130 (312)
+.+..-+ ..-+...-.|...|..+.|+..|.+|++...+ ..
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 4432110 00011223467788999999999999987654 46
Q ss_pred EEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE
Q 021459 131 IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG 210 (312)
Q Consensus 131 i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
|.|+++...+....|+...+.+.++.|+|...+|++++.. .|++||+.....++.+.. ....++.++.+|.|..|+++
T Consensus 548 VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~t-g~kwiS~msihp~GDnli~g 625 (733)
T KOG0650|consen 548 VLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLT-GSKWISSMSIHPNGDNLILG 625 (733)
T ss_pred EEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhc-CCeeeeeeeecCCCCeEEEe
Confidence 8899998776655565556778999999999898888764 799999988766666543 34568888999999999999
Q ss_pred ecCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC------Cch---heeecccCCcc
Q 021459 211 TLDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL------QQK---TMIQKLDGHTD 280 (312)
Q Consensus 211 ~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~------~~~---~~~~~~~~h~~ 280 (312)
+.|+.+..||+.-.. ..+.+..|......+ .....-.++++|+.||.+.+|.- ... .+++.+.+|..
T Consensus 626 s~d~k~~WfDldlsskPyk~lr~H~~avr~V---a~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~ 702 (733)
T KOG0650|consen 626 SYDKKMCWFDLDLSSKPYKTLRLHEKAVRSV---AFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK 702 (733)
T ss_pred cCCCeeEEEEcccCcchhHHhhhhhhhhhhh---hhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCcee
Confidence 999999999997553 344455555443222 33345568999999999999843 222 34577889876
Q ss_pred c----eEEEEEcCCCceEEEeeecCCeeEEEE
Q 021459 281 S----VISVTCHPTENKIASAGLDGDRTVRVW 308 (312)
Q Consensus 281 ~----v~~l~~~p~~~~l~~~~~dgd~~v~iw 308 (312)
. |+.+.|||...+|.++|+| ++||+|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd--~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGAD--GTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCC--ceEEee
Confidence 5 9999999999999999955 589998
No 114
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-25 Score=191.92 Aligned_cols=294 Identities=21% Similarity=0.346 Sum_probs=226.1
Q ss_pred eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC-eEEEEcCCCeEEE
Q 021459 12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH-YICSASDDRTLRI 90 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~ 90 (312)
-+...++.++...|+++.-+|--..+|.|-.+|+|.++++...+.+..++...+.|++++|..||+ .+++|+..|.+-+
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~ 271 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF 271 (910)
T ss_pred CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence 355667889999999999999999999999999999999999999988885569999999999987 6667777799999
Q ss_pred EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC--CC--eEEEEeeecCcCeEEEEEc-cCCCEEE
Q 021459 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK--TG--KCTRVIRAHSMPVTSVHFN-RDGSLIV 165 (312)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~--~~--~~~~~~~~~~~~v~~~~~~-~~~~~l~ 165 (312)
||++...........|.+.+....|-|....+++++.|..+++|=.. .| +.++.-.+|..|..++.|. .+|..+.
T Consensus 272 wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~il 351 (910)
T KOG1539|consen 272 WDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFIL 351 (910)
T ss_pred EEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEE
Confidence 99987544334444788888888999999999999999998887443 33 3344556788888888887 5777888
Q ss_pred EeeCCCeEEEEeCCC-----------------------------------------------------------------
Q 021459 166 SGSHDGTCKIWDAGE----------------------------------------------------------------- 180 (312)
Q Consensus 166 ~~~~d~~i~iwd~~~----------------------------------------------------------------- 180 (312)
+++.|++.+.+++..
T Consensus 352 sa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n 431 (910)
T KOG1539|consen 352 SAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRN 431 (910)
T ss_pred ecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccC
Confidence 888887766654321
Q ss_pred Ccee-eEccc----CCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE---ccCCceeEEEEEEEccCCcEE
Q 021459 181 GACL-KTLID----DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT---GHTNKKYCITSTFSVTNGKYI 252 (312)
Q Consensus 181 ~~~~-~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l 252 (312)
...- ..+.. ..+..+..++.++.|++.+.|+..|.|-+|++++|-....+. .|... +........++.+
T Consensus 432 ~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~---V~gla~D~~n~~~ 508 (910)
T KOG1539|consen 432 KTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE---VTGLAVDGTNRLL 508 (910)
T ss_pred cccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc---eeEEEecCCCceE
Confidence 1100 00000 012345667789999999999999999999999998877773 34443 3333333446789
Q ss_pred EEeecCCeEEEEECCchhe-----------------------------------------eecccCCccceEEEEEcCCC
Q 021459 253 VSGSEDNCVYVWDLQQKTM-----------------------------------------IQKLDGHTDSVISVTCHPTE 291 (312)
Q Consensus 253 ~~~~~dg~i~iwd~~~~~~-----------------------------------------~~~~~~h~~~v~~l~~~p~~ 291 (312)
++++.+|.+.+||.+...+ ++.+.||++.|++++|||+|
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg 588 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG 588 (910)
T ss_pred EEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC
Confidence 9999999999998765442 23446899999999999999
Q ss_pred ceEEEeeecCCeeEEEEee
Q 021459 292 NKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 292 ~~l~~~~~dgd~~v~iw~~ 310 (312)
++|++++.| .+||+||+
T Consensus 589 rWlisasmD--~tIr~wDl 605 (910)
T KOG1539|consen 589 RWLISASMD--STIRTWDL 605 (910)
T ss_pred cEEEEeecC--CcEEEEec
Confidence 999999976 59999996
No 115
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-27 Score=175.66 Aligned_cols=246 Identities=22% Similarity=0.334 Sum_probs=190.5
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc---ceEEEeeeccCCEEEEEEcc--CCCeEEEEcCCCeEEEEeC
Q 021459 19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL---ALVHRFVGHSEGISDLAWSS--DSHYICSASDDRTLRIWDA 93 (312)
Q Consensus 19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~wd~ 93 (312)
..|++.|......--|++|||++.|++|+|+...+. +++..+.+|.++|..++|.. .|.+||+++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 569999999999889999999999999999988764 46788999999999999976 6999999999999999987
Q ss_pred CCCce-eeeeeecccccEEEEEEecC--CCEEEEeecCCcEEEEEcCCC---eEEEEeeecCcCeEEEEEccC---C---
Q 021459 94 RTPFD-CLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRIWEVKTG---KCTRVIRAHSMPVTSVHFNRD---G--- 161 (312)
Q Consensus 94 ~~~~~-~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~---~--- 161 (312)
+++.- .......|...|.+++|.|. |-.|++++.||.|.+.+.++. ...+....|...|+++.|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 76521 12234568899999999885 467999999999999988654 233456789999999999985 4
Q ss_pred --------CEEEEeeCCCeEEEEeCCCCceee-EcccCCCCcEEEEEECCCC----CEEEEEecCCeEEEEEcCCC--cE
Q 021459 162 --------SLIVSGSHDGTCKIWDAGEGACLK-TLIDDKDPAVSFAKFSPNG----KFILVGTLDSTLKLWNYSAG--KF 226 (312)
Q Consensus 162 --------~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~l~~~~~d~~i~v~d~~~~--~~ 226 (312)
+.|++|+.|+.|++|+..+++... ..+..+..-+..++|.|.- .++++++.||++.||..+.. ..
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 469999999999999988764322 2244455567778888864 47999999999999976522 11
Q ss_pred -EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459 227 -LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ 267 (312)
Q Consensus 227 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 267 (312)
...+...... +....++ ..|.+|+.++.|+.|++|.-+
T Consensus 248 k~tll~~f~~~--~w~vSWS-~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 248 KKTLLEEFPDV--VWRVSWS-LSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccCCcc--eEEEEEe-ccccEEEEecCCcEEEEEEeC
Confidence 1222222222 2333343 568999999999999999654
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.6e-27 Score=200.54 Aligned_cols=278 Identities=19% Similarity=0.349 Sum_probs=208.8
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc----ceEEEeee---ccCCEEEEEEcc-CCCeEEEEcCCCeEEEEe
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL----ALVHRFVG---HSEGISDLAWSS-DSHYICSASDDRTLRIWD 92 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~----~~~~~~~~---~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd 92 (312)
-+...+++...++...|+.+|.. .+.|+..... ++...... -...+..+.|.. +.++||+++..|.|.+||
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred cccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence 35677788888999989888874 6778765532 22222211 112455788885 578999999999999999
Q ss_pred CCCC--ceeeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCEEEEee
Q 021459 93 ARTP--FDCLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLIVSGS 168 (312)
Q Consensus 93 ~~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 168 (312)
+... .+.+..+..|...+.++.|++ ..++|++|+.||+|++||++..+....+......|+.++|+| .+..|+++.
T Consensus 117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ 196 (839)
T KOG0269|consen 117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH 196 (839)
T ss_pred cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence 9762 344556778999999999998 457899999999999999999988888888888899999999 567899999
Q ss_pred CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEE-EEcc
Q 021459 169 HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST-FSVT 247 (312)
Q Consensus 169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 247 (312)
..|.+++||+|....-...+..+.+.+.++.|+|++.+||+|+.|+.|+|||..+++.......++. ..+... |-+.
T Consensus 197 dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi--apv~rVkWRP~ 274 (839)
T KOG0269|consen 197 DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI--APVGRVKWRPA 274 (839)
T ss_pred CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec--ceeeeeeeccC
Confidence 9999999999986544434456777888999999999999999999999999986654332222222 123222 3333
Q ss_pred CCcEEEEee--cCCeEEEEECCchh-eeecccCCccceEEEEEcC-CCceEEEeeecC
Q 021459 248 NGKYIVSGS--EDNCVYVWDLQQKT-MIQKLDGHTDSVISVTCHP-TENKIASAGLDG 301 (312)
Q Consensus 248 ~~~~l~~~~--~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~p-~~~~l~~~~~dg 301 (312)
...+|++++ .|-.|+|||++..- +...+..|...+..++|.. +-..|.++|-||
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCcc
Confidence 445677664 57889999997653 4567888999999999965 445677777443
No 117
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.2e-25 Score=184.66 Aligned_cols=278 Identities=20% Similarity=0.327 Sum_probs=217.9
Q ss_pred eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceE-EEeeec-cCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459 17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALV-HRFVGH-SEGISDLAWSSDSHYICSASDDRTLRIWDAR 94 (312)
Q Consensus 17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~ 94 (312)
.+..-..+|++++|+.+.+.||.+..||.|.+|++...-.+ ..+.++ ...|.+++|. ++..|++.+.+|.|.-||+.
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecc
Confidence 34445779999999999999999999999999999875433 334444 4679999999 55577788899999999998
Q ss_pred CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE--EeeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459 95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR--VIRAHSMPVTSVHFNRDGSLIVSGSHDGT 172 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
+. +....+....+.|++++.+|.+..++.|+.||.+..++...++... .+...++.+.++.|+|++..+++|+.||.
T Consensus 99 ~l-k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~ 177 (691)
T KOG2048|consen 99 TL-KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGV 177 (691)
T ss_pred cC-ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCce
Confidence 85 4455666677899999999999999999999988888888776543 34445678999999999999999999999
Q ss_pred EEEEeCCCCceeeEcc------cC-CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEE
Q 021459 173 CKIWDAGEGACLKTLI------DD-KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFS 245 (312)
Q Consensus 173 i~iwd~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
|++||...+....... .. ....+..+.+- ....+++|...|+|.+||...+..+..+..|.....++..
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav--- 253 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAV--- 253 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEE---
Confidence 9999999887655111 11 22234444444 3357899999999999999999988888888777666544
Q ss_pred ccCCcEEEEeecCCeEEEEECCchhe----eecccCCccceEEEEEcCCCceEEEeeecCC
Q 021459 246 VTNGKYIVSGSEDNCVYVWDLQQKTM----IQKLDGHTDSVISVTCHPTENKIASAGLDGD 302 (312)
Q Consensus 246 ~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd 302 (312)
.++++.+++++.|+.|..|....... ......|...|.+++..++ .+++||.|.+
T Consensus 254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~ 312 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFT 312 (691)
T ss_pred cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeE
Confidence 46778999999999999998765422 3344568889999999776 8888887653
No 118
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.7e-28 Score=203.65 Aligned_cols=242 Identities=20% Similarity=0.387 Sum_probs=189.8
Q ss_pred ceEEEEECC-CCCEEEEEeCCCeEEEEeCCC---cceEEEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCCCce
Q 021459 24 AVSCVKFSN-DGTLLASASLDKTVIIWSASS---LALVHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDARTPFD 98 (312)
Q Consensus 24 ~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~~~~ 98 (312)
.+..++|.. +.++|||++.+|.|.+||+.. .+++..+..|...++++.|++. ..+|++|+.||.|++||++.. .
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~-~ 167 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK-K 167 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc-c
Confidence 455678874 567999999999999999987 5566677889999999999985 568999999999999999874 4
Q ss_pred eeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEE
Q 021459 99 CLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW 176 (312)
Q Consensus 99 ~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (312)
...+..+....|+.+.|+| .++.++++...|.+++||++.. ++...+.+|.++|.|+.|+|++.+||+|+.|+.|+||
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIW 247 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEE
Confidence 5666777888999999998 4678999999999999999854 4566778999999999999999999999999999999
Q ss_pred eCCCCceeeEcccCCCCcEEEEEECCCCCE-EEEEe--cCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEE
Q 021459 177 DAGEGACLKTLIDDKDPAVSFAKFSPNGKF-ILVGT--LDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYI 252 (312)
Q Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~--~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
|..+++......-.....+..+.|-|...+ |++++ .|-.|+|||++..- ....+..|..... .+.+...+...+
T Consensus 248 d~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt--~i~W~~~d~~~l 325 (839)
T KOG0269|consen 248 DMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT--GIAWDSGDRINL 325 (839)
T ss_pred eccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc--ceeccCCCceee
Confidence 998765443333344567888899997664 44443 57789999997654 3456666665432 223333456678
Q ss_pred EEeecCCeEEEEECCc
Q 021459 253 VSGSEDNCVYVWDLQQ 268 (312)
Q Consensus 253 ~~~~~dg~i~iwd~~~ 268 (312)
.+++.||.|..-..++
T Consensus 326 ~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 326 WSCSKDGTVLQHLFKN 341 (839)
T ss_pred EeecCccHHHHhhhhc
Confidence 8999999886654443
No 119
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3e-26 Score=175.55 Aligned_cols=279 Identities=23% Similarity=0.449 Sum_probs=207.1
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee
Q 021459 25 VSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR 104 (312)
Q Consensus 25 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~ 104 (312)
..|+.|++-|.+||.|..||.|.+||+.+...-..+.+|..+|++++|+++|+.|+++|.|..+.+||+..+. +++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEEE
Confidence 7899999999999999999999999999988878889999999999999999999999999999999998764 555554
Q ss_pred cccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEeeec-----CcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459 105 GHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAH-----SMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178 (312)
Q Consensus 105 ~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (312)
.+++|+.+.|+|.. +.+++.-.+..-.+-++..++. ..+... .....+..|.+.|+++++|...|.+.++|.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 46789999999943 4444444444444555543221 111110 111233468899999999999999999999
Q ss_pred CCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC-------cEE--EEEEccCCceeEEEEEEEccCC
Q 021459 179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG-------KFL--KIYTGHTNKKYCITSTFSVTNG 249 (312)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~ 249 (312)
.+-+++..+.-.....+..+.++..|..|++-+.|..||.|+.+.- +.. ..++.-.++...-.++|+ .+|
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs-~dg 261 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS-GDG 261 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec-CCc
Confidence 8877776654333356777889999999999999999999997631 110 001100111111123344 578
Q ss_pred cEEEEee-cCCeEEEEECCchheeecccCCc-cceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 250 KYIVSGS-EDNCVYVWDLQQKTMIQKLDGHT-DSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 250 ~~l~~~~-~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
.+++.|+ ....++||.-..+.+++.+.|.. .....+.|||-...+++.. .++|++|-+
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~---sg~v~iw~~ 321 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA---SGVVYIWAV 321 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc---CCceEEEEe
Confidence 8887665 45789999999999999998876 5788999999988887763 358999975
No 120
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=9.7e-26 Score=172.18 Aligned_cols=236 Identities=24% Similarity=0.338 Sum_probs=180.2
Q ss_pred cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE
Q 021459 64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR 143 (312)
Q Consensus 64 ~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 143 (312)
.+.|.++.|+|.+..|++++.||++++||+... .++..-.|..++.+++|.+ ...+++|+.||.|+.+|+++++..
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~--~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~- 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN--SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED- 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccch--hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-
Confidence 578999999999999999999999999998764 2333345889999999987 468899999999999999988643
Q ss_pred EeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459 144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223 (312)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 223 (312)
.+..|..++.++.+++....+++|+.|++|++||.+.......+. ....+. +.+-.++.|++|+.+..|.+||+++
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy--~~~v~g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVY--CMDVSGNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEE--EEeccCCEEEEeecCceEEEEEccc
Confidence 456799999999999988899999999999999999754443332 222333 3456788999999999999999988
Q ss_pred CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch----heeecccCCc---------cceEEEEEcCC
Q 021459 224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK----TMIQKLDGHT---------DSVISVTCHPT 290 (312)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~h~---------~~v~~l~~~p~ 290 (312)
....... ....-.+.+.+....|++.-.+.++-||+|.+=.+... ..-..++.|. -+|++++|||-
T Consensus 165 ~~~~~q~-reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 165 LDEPFQR-RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred ccchhhh-ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 6543311 12222344444445567778899999999988555433 2222344443 27999999999
Q ss_pred CceEEEeeecCCeeEEEEee
Q 021459 291 ENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 291 ~~~l~~~~~dgd~~v~iw~~ 310 (312)
.+.|+|||.| +-|.+|+.
T Consensus 244 ~~tfaTgGsD--G~V~~Wd~ 261 (323)
T KOG1036|consen 244 HGTFATGGSD--GIVNIWDL 261 (323)
T ss_pred cceEEecCCC--ceEEEccC
Confidence 9999999955 58999986
No 121
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=5e-26 Score=189.00 Aligned_cols=280 Identities=24% Similarity=0.410 Sum_probs=205.4
Q ss_pred EEECC---CCCEEEEEeCCCeEEEEeCCCcc------eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce
Q 021459 28 VKFSN---DGTLLASASLDKTVIIWSASSLA------LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD 98 (312)
Q Consensus 28 ~~~s~---~~~~l~t~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~ 98 (312)
..|++ ....|+.+..||.|.++|..... .+.....|...|.++.|-|-...|++++.|.++++||+.+. .
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-~ 133 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-R 133 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-e
Confidence 56664 34579999999999999987543 23556789999999999996678999999999999999875 3
Q ss_pred eee--eeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCe---------------------------EEEEeeec
Q 021459 99 CLK--TLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGK---------------------------CTRVIRAH 148 (312)
Q Consensus 99 ~~~--~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~---------------------------~~~~~~~~ 148 (312)
+.. ...||.+.+.+++|.|.. ..|++|+.||.|.|||++-.. .+..-+++
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 333 367899999999999954 678999999999999986321 00111223
Q ss_pred CcCeEE---EEEccCCCEEEEeeC-CCeEEEEeCCCCceeeEcc--------cC--CCCcEEEEEECCCCCEEEEEecCC
Q 021459 149 SMPVTS---VHFNRDGSLIVSGSH-DGTCKIWDAGEGACLKTLI--------DD--KDPAVSFAKFSPNGKFILVGTLDS 214 (312)
Q Consensus 149 ~~~v~~---~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~--------~~--~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
...+.+ +.+..|+..|++++. |+.|++||++..+...... .. ....+..+..+..|.+|.+...|+
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 333444 445578888998887 9999999999765432211 11 011244455677789999888899
Q ss_pred eEEEEEcCCCc--EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe-eecccCCccceEEEEEcCCC
Q 021459 215 TLKLWNYSAGK--FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM-IQKLDGHTDSVISVTCHPTE 291 (312)
Q Consensus 215 ~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~p~~ 291 (312)
.|++|++.... .+..+.++......+... ..+++.++++|+.|+..++|.+.+-+. ...+.+|...|.+++|.|..
T Consensus 294 sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~-lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 294 SIYFYNMRSLSISPVAEFSGKLNSSFYVKSE-LSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred cEEEEeccccCcCchhhccCcccceeeeeee-cCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 99999987643 344455554443333332 347899999999999999999976543 55678999999999998854
Q ss_pred -ceEEEeeecCCeeEEEEeec
Q 021459 292 -NKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 292 -~~l~~~~~dgd~~v~iw~~~ 311 (312)
.-+++++ .|.+++||...
T Consensus 373 ~t~v~TcS--dD~~~kiW~l~ 391 (720)
T KOG0321|consen 373 TTPVATCS--DDFRVKIWRLS 391 (720)
T ss_pred CCCceeec--cCcceEEEecc
Confidence 4567776 46799999874
No 122
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.8e-26 Score=194.18 Aligned_cols=247 Identities=23% Similarity=0.376 Sum_probs=207.0
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC---CCeEEEEcCCCeEEEEeCCC
Q 021459 19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD---SHYICSASDDRTLRIWDART 95 (312)
Q Consensus 19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~~wd~~~ 95 (312)
.+....+.+++.||+|+.||+|..-|+++||++...+....++.|...|.++.|+.. .++||+++.|+.|++||+..
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 345678999999999999999999999999999999988899999999999999853 46899999999999999987
Q ss_pred CceeeeeeecccccEEEEEEecCC--CEEEEeecCCcEEEEEcCCCeEEEEeee-----cCcCeEEEEEccCCCEEEEee
Q 021459 96 PFDCLKTLRGHSDFVFCVNFNPQS--NLIVSGSFDESIRIWEVKTGKCTRVIRA-----HSMPVTSVHFNRDGSLIVSGS 168 (312)
Q Consensus 96 ~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~~wd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~ 168 (312)
....++++.+|...|.++.|...+ ..+++++.|..|.+--.+....-..+.. .+..++.|+..|.-+++++++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 778889999999999999998876 6799999999886532221111112211 234688999999999999999
Q ss_pred CCCeEEEEeCCCCceeeEcccCCC--CcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459 169 HDGTCKIWDAGEGACLKTLIDDKD--PAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246 (312)
Q Consensus 169 ~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
.|..|+|||+.+++..+.+.+.++ ...--+..+|.|.|+++...|+++.++|+.+++++....+|.+. ++...+.
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~---VTG~kF~ 692 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA---VTGVKFL 692 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh---eeeeeec
Confidence 999999999999999888876543 33344568999999999999999999999999999999998875 3444455
Q ss_pred cCCcEEEEeecCCeEEEEECCc
Q 021459 247 TNGKYIVSGSEDNCVYVWDLQQ 268 (312)
Q Consensus 247 ~~~~~l~~~~~dg~i~iwd~~~ 268 (312)
++-++|++.+.||+|.+|.+..
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhheeecCCceEEEEECch
Confidence 7889999999999999999853
No 123
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=4e-26 Score=185.35 Aligned_cols=249 Identities=24% Similarity=0.353 Sum_probs=183.9
Q ss_pred ceeeecc-cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE------------EeeeccCCEEEEEEccCC-CeE
Q 021459 14 HFKTLTA-HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH------------RFVGHSEGISDLAWSSDS-HYI 79 (312)
Q Consensus 14 ~~~~~~~-h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~------------~~~~~~~~v~~~~~~~~~-~~l 79 (312)
.|+.|.. -...|++++|++.|..|+..+..-..+|+|-...+... ..+||...+++-+|+|.. ..+
T Consensus 205 ~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~F 284 (641)
T KOG0772|consen 205 SFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEF 284 (641)
T ss_pred hhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccce
Confidence 3445543 35689999999999988888777889999876554332 336798999999999974 588
Q ss_pred EEEcCCCeEEEEeCCCCceeeeeee-----cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE---EEEeeecCc-
Q 021459 80 CSASDDRTLRIWDARTPFDCLKTLR-----GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC---TRVIRAHSM- 150 (312)
Q Consensus 80 ~~~~~d~~v~~wd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~- 150 (312)
++++.||++++||+++....++.++ +..-.+..++|++|++.+++|..||+|.+|+..+... ...-.+|..
T Consensus 285 lT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g 364 (641)
T KOG0772|consen 285 LTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG 364 (641)
T ss_pred EEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC
Confidence 8999999999999987654443332 2234678899999999999999999999999854322 233356765
Q ss_pred -CeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce-eeEccc-CCCCcEEEEEECCCCCEEEEEec------CCeEEEEEc
Q 021459 151 -PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC-LKTLID-DKDPAVSFAKFSPNGKFILVGTL------DSTLKLWNY 221 (312)
Q Consensus 151 -~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~------d~~i~v~d~ 221 (312)
.|+++.|+++|++|++-+.|+++++||+++-+. +....+ ......+.++|+|+.+++++|+. .|.+.+||.
T Consensus 365 ~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~ 444 (641)
T KOG0772|consen 365 QDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDR 444 (641)
T ss_pred CceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEec
Confidence 799999999999999999999999999997542 222111 11223455779999999999853 467999998
Q ss_pred CCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEE
Q 021459 222 SAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWD 265 (312)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 265 (312)
.+-+.+..+.-. ...++.+. +.+.-+.|..|+.||.+++|-
T Consensus 445 ~t~d~v~ki~i~--~aSvv~~~-WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 445 MTLDTVYKIDIS--TASVVRCL-WHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cceeeEEEecCC--CceEEEEe-ecchhhheeeecCCCceEEEE
Confidence 776665544322 23344444 446667788899999999973
No 124
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.5e-26 Score=175.03 Aligned_cols=248 Identities=27% Similarity=0.507 Sum_probs=202.0
Q ss_pred ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEE
Q 021459 55 ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134 (312)
Q Consensus 55 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~w 134 (312)
.+...+.+|.++|+.++-......+.+++.|.+.++|.++++ .++..+.||.+.|.++.|++.+.++++++.|++-.+|
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg-~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG-ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc-cceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 345667899999999998877779999999999999999986 7888999999999999999999999999999999999
Q ss_pred E------cCCC----------------------------------eEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459 135 E------VKTG----------------------------------KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK 174 (312)
Q Consensus 135 d------~~~~----------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
. +... .++..+.+|...|.+..|...|+.+++++.|.+-.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 6 1110 12345677888899999999999999999999999
Q ss_pred EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC-cEEEEEEccCCceeEEEEEEEccCCcEEE
Q 021459 175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG-KFLKIYTGHTNKKYCITSTFSVTNGKYIV 253 (312)
Q Consensus 175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (312)
+||+.++..+..+.+ ++.....++-+|..+++++++.|.+.++||++.. ..+.+|++|....... .| ..+..++
T Consensus 298 lwDVEtge~v~~LtG-Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~--vF--~~dd~vV 372 (481)
T KOG0300|consen 298 LWDVETGEVVNILTG-HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSV--VF--NTDDRVV 372 (481)
T ss_pred eeeeccCceeccccC-cchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEE--EE--ecCCcee
Confidence 999999998876654 5566777778999999999999999999999854 3467889998864332 22 2456899
Q ss_pred EeecCCeEEEEECCch-heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 254 SGSEDNCVYVWDLQQK-TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 254 ~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
+|++|.+|++||+++. ..+.++. -..+++.++.+..++.++.- .| ...||+|+++
T Consensus 373 SgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiP-hD-NRqvRlfDln 428 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIP-HD-NRQVRLFDLN 428 (481)
T ss_pred ecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEec-cC-CceEEEEecC
Confidence 9999999999999764 4455555 35688999998776666654 34 4799999974
No 125
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.8e-25 Score=179.38 Aligned_cols=263 Identities=21% Similarity=0.341 Sum_probs=196.1
Q ss_pred EeCC-CeEEEEeCCCcceEEEeeec-cCCEEEEEEccCCCeEEEEcC-CCeEEEEeCCCCceeeeeeecccccEEEEEEe
Q 021459 40 ASLD-KTVIIWSASSLALVHRFVGH-SEGISDLAWSSDSHYICSASD-DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFN 116 (312)
Q Consensus 40 ~~~d-~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 116 (312)
++.| .++.+||+.++..+..+++- ...-.++..- .+.+++++.. ...+.+|.+....+.. ...--.+++.++.-+
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhh-hhcccccceeeeecC
Confidence 3344 45899999999888777654 2211222111 2356666544 4578899886543322 222245789999999
Q ss_pred cCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCC--------ceeeEcc
Q 021459 117 PQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG--------ACLKTLI 188 (312)
Q Consensus 117 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~--------~~~~~~~ 188 (312)
|.|.+++.|+..|.|++|.+.+|..+..+.+|..+|+++.|+-||.+|++|+.||.|.+|++..- .......
T Consensus 91 n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f 170 (476)
T KOG0646|consen 91 NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF 170 (476)
T ss_pred CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999976321 1112223
Q ss_pred cCCCCcEEEEEECCC--CCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459 189 DDKDPAVSFAKFSPN--GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266 (312)
Q Consensus 189 ~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 266 (312)
.++.-.++.+...+. ...|++++.|.++++||+..+..+..+.-... +.++...|.++.+..|+++|.|.+.++
T Consensus 171 ~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s----i~av~lDpae~~~yiGt~~G~I~~~~~ 246 (476)
T KOG0646|consen 171 SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS----IKAVALDPAERVVYIGTEEGKIFQNLL 246 (476)
T ss_pred ccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc----ceeEEEcccccEEEecCCcceEEeeeh
Confidence 445556666666554 46899999999999999999988776653322 333444577889999999999999877
Q ss_pred Cch----------------heeecccCCcc--ceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 267 QQK----------------TMIQKLDGHTD--SVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 267 ~~~----------------~~~~~~~~h~~--~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
... +.+..+.||.. +|+||+.+-||..|++|+.| +.|.||++
T Consensus 247 ~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d--g~VcvWdi 306 (476)
T KOG0646|consen 247 FKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED--GKVCVWDI 306 (476)
T ss_pred hcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC--CCEEEEec
Confidence 432 22345668887 99999999999999999855 58999997
No 126
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=6.1e-25 Score=187.64 Aligned_cols=286 Identities=20% Similarity=0.341 Sum_probs=227.0
Q ss_pred eecccccceEEEEECCCCC-EEEEEeCCCeEEEEeCCCcceEEEee-eccCCEEEEEEccCCCeEEEEcCCCeEEEE--e
Q 021459 17 TLTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDDRTLRIW--D 92 (312)
Q Consensus 17 ~~~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w--d 92 (312)
++..-.+.|++++|.-||+ .+++|+..|.+-+||++..+++.... .|.++|....|.|....+++++.|..+++| |
T Consensus 239 sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 239 SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEee
Confidence 3333358999999999997 57778888999999999988877666 688888888898888888888888887777 4
Q ss_pred CCCC----------------------------------------------------c--------------------eee
Q 021459 93 ARTP----------------------------------------------------F--------------------DCL 100 (312)
Q Consensus 93 ~~~~----------------------------------------------------~--------------------~~~ 100 (312)
...+ . +.+
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i 398 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPI 398 (910)
T ss_pred CCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcc
Confidence 1000 0 000
Q ss_pred --------------------------ee-----------------eecccccEEEEEEecCCCEEEEeecCCcEEEEEcC
Q 021459 101 --------------------------KT-----------------LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK 137 (312)
Q Consensus 101 --------------------------~~-----------------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~ 137 (312)
.+ ++.....+.+++.++-|++.+.|...|.|.+|+++
T Consensus 399 ~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ 478 (910)
T KOG1539|consen 399 VEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ 478 (910)
T ss_pred eeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcc
Confidence 00 00011235677788888999999999999999999
Q ss_pred CCeEEEEe---eecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC
Q 021459 138 TGKCTRVI---RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS 214 (312)
Q Consensus 138 ~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
+|-....+ ..|..+|+.++...-++.+++++.+|.+++||..+...+..+.. +..+..+..+.....++++..|-
T Consensus 479 SGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l--~~~~~~iv~hr~s~l~a~~~ddf 556 (910)
T KOG1539|consen 479 SGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL--GSSITGIVYHRVSDLLAIALDDF 556 (910)
T ss_pred cCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc--CCCcceeeeeehhhhhhhhcCce
Confidence 99877777 58999999999998889999999999999999988776555432 23344555666777889999999
Q ss_pred eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceE
Q 021459 215 TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKI 294 (312)
Q Consensus 215 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l 294 (312)
.|+++|..+.+.++.+.+|.+..... ...++|++|++++.|++|++||+.++.++.-+. -..++..+.++|+|.+|
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~---~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~L 632 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDM---TFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFL 632 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeee---EeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEE
Confidence 99999999999999999998875443 345899999999999999999999998887664 46788999999999999
Q ss_pred EEeeecCCeeEEEEe
Q 021459 295 ASAGLDGDRTVRVWV 309 (312)
Q Consensus 295 ~~~~~dgd~~v~iw~ 309 (312)
||+..|+ .-|.+|-
T Consensus 633 AT~Hvd~-~gIylWs 646 (910)
T KOG1539|consen 633 ATVHVDQ-NGIYLWS 646 (910)
T ss_pred EEEEecC-ceEEEEE
Confidence 9999875 5788884
No 127
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=179.79 Aligned_cols=254 Identities=23% Similarity=0.417 Sum_probs=202.3
Q ss_pred EEEEEeC-CCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEE
Q 021459 36 LLASASL-DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVN 114 (312)
Q Consensus 36 ~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~ 114 (312)
+++++.. -..+.+|.+..........--++.|.+++-+|+|.+|+.|...|.+++|.+.++ ..+..+.+|=..|.|+.
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG-~LL~v~~aHYQ~ITcL~ 130 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG-ILLNVLSAHYQSITCLK 130 (476)
T ss_pred heeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccc-cHHHHHHhhccceeEEE
Confidence 4444433 235778877655443322334678999999999999999989999999999986 55666788999999999
Q ss_pred EecCCCEEEEeecCCcEEEEEcC---------CCeEEEEeeecCcCeEEEEEccCC--CEEEEeeCCCeEEEEeCCCCce
Q 021459 115 FNPQSNLIVSGSFDESIRIWEVK---------TGKCTRVIRAHSMPVTSVHFNRDG--SLIVSGSHDGTCKIWDAGEGAC 183 (312)
Q Consensus 115 ~~~~~~~l~s~~~dg~i~~wd~~---------~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd~~~~~~ 183 (312)
|+.|+.++++|+.||.|.+|++. +-+....+..|.-+|+++...+.| .++++++.|.++++||+..+..
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L 210 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL 210 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence 99999999999999999999863 234567788899999999987753 5899999999999999999988
Q ss_pred eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC----------------CcEEEEEEccCC--ceeEEEEEEE
Q 021459 184 LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA----------------GKFLKIYTGHTN--KKYCITSTFS 245 (312)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~----------------~~~~~~~~~~~~--~~~~~~~~~~ 245 (312)
+.++. .+..+..++.+|.+..+.+|+.+|.|.+.++.. +..+..+.+|.. ...|+ ..
T Consensus 211 Llti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL---ai 285 (476)
T KOG0646|consen 211 LLTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL---AI 285 (476)
T ss_pred eEEEe--cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE---EE
Confidence 87764 356688889999999999999999999887643 223455667766 44444 34
Q ss_pred ccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEE
Q 021459 246 VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIA 295 (312)
Q Consensus 246 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~ 295 (312)
..+|.+|++|+.||.|.+||+.+.++++++....++|+.+.+.|-....+
T Consensus 286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGII 335 (476)
T ss_pred ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccccee
Confidence 46799999999999999999999999988876678899999976544333
No 128
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=2e-25 Score=178.68 Aligned_cols=293 Identities=21% Similarity=0.273 Sum_probs=212.3
Q ss_pred ceeeecccccceEEEEECCCC--CEEEEEeCCCeEEEEeCCC----cceEEEeeeccCCEEEEEEccC-CCeEEEEcCCC
Q 021459 14 HFKTLTAHSRAVSCVKFSNDG--TLLASASLDKTVIIWSASS----LALVHRFVGHSEGISDLAWSSD-SHYICSASDDR 86 (312)
Q Consensus 14 ~~~~~~~h~~~v~~~~~s~~~--~~l~t~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~ 86 (312)
+......|...|++++|+|-. +++|+|..-|.|-+||+.+ ..-+..+..|..+|.++.|+|. ...+++.|.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 334456689999999999955 4889999999999999952 2234566789999999999995 46888899999
Q ss_pred eEEEEeCCCCce-eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE-EEEeeecCcCeEEEEEccC-CCE
Q 021459 87 TLRIWDARTPFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC-TRVIRAHSMPVTSVHFNRD-GSL 163 (312)
Q Consensus 87 ~v~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~-~~~ 163 (312)
+|++-|++.... .+............+.|+.+...++.+..=|...+||++++.. ...+.-|...|..++++|. ..+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 999999876421 1122222334556777888777777777777999999998765 4556678889999999994 457
Q ss_pred EEEeeCCCeEEEEeCCCCceeeE-c--ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC----CCcEEEEEEccCC-
Q 021459 164 IVSGSHDGTCKIWDAGEGACLKT-L--IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS----AGKFLKIYTGHTN- 235 (312)
Q Consensus 164 l~~~~~d~~i~iwd~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~----~~~~~~~~~~~~~- 235 (312)
+++++.|++.+|||+++-..... + ...+...+..+.|+|++..|++.+.|..|+|||.. .......+.....
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t 417 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT 417 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence 89999999999999986432221 1 12355678889999999999999999999999973 2222222221111
Q ss_pred --ceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCc-cceEEE-EEcCCCceEEEeeecCCeeEEEE
Q 021459 236 --KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHT-DSVISV-TCHPTENKIASAGLDGDRTVRVW 308 (312)
Q Consensus 236 --~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l-~~~p~~~~l~~~~~dgd~~v~iw 308 (312)
....+.. .+.|+..+++.|..-..|-++|-+.++++..+.... ..|.++ .|||.+..+++||..+ +.|.||
T Consensus 418 ~RwlT~fKA-~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~-Gki~vf 492 (498)
T KOG4328|consen 418 GRWLTPFKA-AWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS-GKIYVF 492 (498)
T ss_pred cccccchhh-eeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc-ceEEEE
Confidence 1112233 334678899999999999999998888766654433 356665 7999998788777543 455555
No 129
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=2.3e-25 Score=186.66 Aligned_cols=295 Identities=21% Similarity=0.359 Sum_probs=218.0
Q ss_pred eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc----ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL----ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI 90 (312)
Q Consensus 15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 90 (312)
...+.||.+.|..+.|+|.|++|++.|.|.+-|++..-.. -.+.+-+-|...++|+++-+....+++|.+++.+++
T Consensus 354 ~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRv 433 (764)
T KOG1063|consen 354 EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRV 433 (764)
T ss_pred ccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeee
Confidence 3456899999999999999999999999999999854421 233444568889999999987667888888889998
Q ss_pred EeCCC-------------------------------------------Cce-----------------------------
Q 021459 91 WDART-------------------------------------------PFD----------------------------- 98 (312)
Q Consensus 91 wd~~~-------------------------------------------~~~----------------------------- 98 (312)
|+... +..
T Consensus 434 F~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~t 513 (764)
T KOG1063|consen 434 FEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNT 513 (764)
T ss_pred ecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhc
Confidence 86520 000
Q ss_pred ---eeeeeecccccEEEEEEecCCCEEEEeecCC-----cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459 99 ---CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE-----SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD 170 (312)
Q Consensus 99 ---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
.+..+.||...|.+++.+|++++++++.... .|++|+..+-...+.++.|...|+.++|+|||++|++.+.|
T Consensus 514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence 0123567888899999999999999987653 48999998877777889999999999999999999999999
Q ss_pred CeEEEEeCCCCceee---EcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC--cEEEEE--EccCCceeEEEEE
Q 021459 171 GTCKIWDAGEGACLK---TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG--KFLKIY--TGHTNKKYCITST 243 (312)
Q Consensus 171 ~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~--~~~~~~~~~~~~~ 243 (312)
+++.+|...+..... .....+...+..+.|+|++.++++++.|+.|++|..... +.+..+ ..+......+...
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence 999999875432211 113456677888899999999999999999999998776 333221 1122222223222
Q ss_pred EE--ccCCcEEEEeecCCeEEEEECCch---------he---eecccCCccceEEEEEcCC--------Cc--eEEEeee
Q 021459 244 FS--VTNGKYIVSGSEDNCVYVWDLQQK---------TM---IQKLDGHTDSVISVTCHPT--------EN--KIASAGL 299 (312)
Q Consensus 244 ~~--~~~~~~l~~~~~dg~i~iwd~~~~---------~~---~~~~~~h~~~v~~l~~~p~--------~~--~l~~~~~ 299 (312)
.. ...+..++.|-+.|.|.+|..... .. .....+|...|+.+.|.|. .. .|++++.
T Consensus 674 ~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~ 753 (764)
T KOG1063|consen 674 PVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD 753 (764)
T ss_pred ccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc
Confidence 11 223457899999999999985411 11 1122357789999999976 23 3577774
Q ss_pred cCCeeEEEEeec
Q 021459 300 DGDRTVRVWVQD 311 (312)
Q Consensus 300 dgd~~v~iw~~~ 311 (312)
|..+||++++
T Consensus 754 --D~~vri~nv~ 763 (764)
T KOG1063|consen 754 --DESVRIFNVD 763 (764)
T ss_pred --cceeEEeecc
Confidence 5789998875
No 130
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.7e-24 Score=181.06 Aligned_cols=237 Identities=21% Similarity=0.357 Sum_probs=196.2
Q ss_pred ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecc-cccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE
Q 021459 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGH-SDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC 141 (312)
Q Consensus 63 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~ 141 (312)
.+.+|.+++|+.+.+.||.+-.+|.|.+|++....-+...+.++ +..|..++|. ++..|++.+.+|.|..||+.+++.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 35789999999999999999999999999998866555555554 4678999999 466888999999999999999999
Q ss_pred EEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceee-EcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEE
Q 021459 142 TRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLK-TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWN 220 (312)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d 220 (312)
...+.....+|++++.+|.+..++.|+.||.+..++...+.... +.+..+...+-.+.|+|++..+++|+.||.|++||
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 99998889999999999999999999999988888887766543 23344456788899999999999999999999999
Q ss_pred cCCCcEEEEEEc----cCC-ceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEE
Q 021459 221 YSAGKFLKIYTG----HTN-KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIA 295 (312)
Q Consensus 221 ~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~ 295 (312)
...+..+..... -.. ...++-...+. ....|++|...|.|.+||...+++++.+..|.+.|.+++..+++.++.
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 999887663221 111 22222222222 355899999999999999999999999999999999999999999999
Q ss_pred EeeecC
Q 021459 296 SAGLDG 301 (312)
Q Consensus 296 ~~~~dg 301 (312)
++|.|+
T Consensus 262 saGvd~ 267 (691)
T KOG2048|consen 262 SAGVDP 267 (691)
T ss_pred EccCCC
Confidence 999886
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=2.5e-23 Score=171.45 Aligned_cols=265 Identities=16% Similarity=0.165 Sum_probs=189.0
Q ss_pred eeeecccccceEEEEECCCCCEE-EEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-cCCCeEEEEe
Q 021459 15 FKTLTAHSRAVSCVKFSNDGTLL-ASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-SDDRTLRIWD 92 (312)
Q Consensus 15 ~~~~~~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~v~~wd 92 (312)
.+++..|. .+.+++|+|+++.+ ++++.++.|++|+..+++.+..+..+. .+..++|+|+++.++++ ..++.+++||
T Consensus 24 ~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d 101 (300)
T TIGR03866 24 TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVID 101 (300)
T ss_pred EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence 34455444 36789999999976 567788999999999888776665443 35678999999877654 5689999999
Q ss_pred CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCC-cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE-eeCC
Q 021459 93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE-SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS-GSHD 170 (312)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d 170 (312)
+.+. +.+..+.. ...+.+++|+|+++.+++++.++ .+.+||.++++....... ......+.|+|+++++++ +..+
T Consensus 102 ~~~~-~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 102 IETR-KVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred CCCC-eEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCC
Confidence 9874 33444432 23457899999999999888765 467789988776554432 234577899999998854 4568
Q ss_pred CeEEEEeCCCCceeeEcccCC------CCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEE
Q 021459 171 GTCKIWDAGEGACLKTLIDDK------DPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITST 243 (312)
Q Consensus 171 ~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
+.+.+||+.+++....+.... ......+.++|++++++++ +.++.+.+||.++++.+...... .....+
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~--- 254 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG-QRVWQL--- 254 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC-CCcceE---
Confidence 999999999887655442111 1112346689999986554 55678999999888876554322 222222
Q ss_pred EEccCCcEEEEe-ecCCeEEEEECCchheeecccCCccceEEEEEcC
Q 021459 244 FSVTNGKYIVSG-SEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHP 289 (312)
Q Consensus 244 ~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p 289 (312)
...+++++|+++ +.+|.|.+||+.+++.+..++.. ...+.++++|
T Consensus 255 ~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 255 AFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 344778888775 56999999999999988888754 5558888875
No 132
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.3e-24 Score=166.10 Aligned_cols=263 Identities=25% Similarity=0.387 Sum_probs=189.8
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC----cceEEEeeeccCCEEEEEEccC--CCeEEEEcCCCeEEEEe
Q 021459 19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS----LALVHRFVGHSEGISDLAWSSD--SHYICSASDDRTLRIWD 92 (312)
Q Consensus 19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~~wd 92 (312)
.+|.+-|+++.|.+-|+++||++.|++++|||... .......+.|.+.|..+.|.+. |+.+|+|+.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 47999999999999999999999999999999543 4566778999999999999763 89999999999999997
Q ss_pred CCCC--------ceeeeeeecccccEEEEEEecC--CCEEEEeecCCcEEEEEcCCCeEE------EEee-------ecC
Q 021459 93 ARTP--------FDCLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRIWEVKTGKCT------RVIR-------AHS 149 (312)
Q Consensus 93 ~~~~--------~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~------~~~~-------~~~ 149 (312)
-... .....++......|..+.|.|. |-.+++++.||.+++|+....-.+ ..++ .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 5211 0122344455678999999995 457999999999999986543211 1122 245
Q ss_pred cCeEEEEEccC---CCEEEEeeCC-----CeEEEEeCCCCc----eeeEcccCCCCcEEEEEECCCC----CEEEEEecC
Q 021459 150 MPVTSVHFNRD---GSLIVSGSHD-----GTCKIWDAGEGA----CLKTLIDDKDPAVSFAKFSPNG----KFILVGTLD 213 (312)
Q Consensus 150 ~~v~~~~~~~~---~~~l~~~~~d-----~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~d 213 (312)
.+..|+.|+|. ..+|++|+.+ +.++||...++. .+.++. .+...+..++|.|+- .+||+++.|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCceeeEEEeecC
Confidence 56789999973 4577877766 478888765433 223333 456678889999963 578999999
Q ss_pred CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCce
Q 021459 214 STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENK 293 (312)
Q Consensus 214 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 293 (312)
| |+||.+...... +.+ .+.++ ... +.++ .-+.+..+.+|.+.|+++.|+-.|..
T Consensus 249 g-v~I~~v~~~~s~-i~~-----------------ee~~~-~~~-----~~~l-~v~~vs~~~~H~~~VWrv~wNmtGti 302 (361)
T KOG2445|consen 249 G-VRIFKVKVARSA-IEE-----------------EEVLA-PDL-----MTDL-PVEKVSELDDHNGEVWRVRWNMTGTI 302 (361)
T ss_pred c-EEEEEEeeccch-hhh-----------------hcccC-CCC-----cccc-ceEEeeeccCCCCceEEEEEeeeeeE
Confidence 9 999987542210 000 00000 000 0111 12456678899999999999999999
Q ss_pred EEEeeecCCeeEEEEee
Q 021459 294 IASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 294 l~~~~~dgd~~v~iw~~ 310 (312)
|++.|.| +.||+|..
T Consensus 303 LsStGdD--G~VRLWka 317 (361)
T KOG2445|consen 303 LSSTGDD--GCVRLWKA 317 (361)
T ss_pred EeecCCC--ceeeehhh
Confidence 9999866 59999975
No 133
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=3.3e-25 Score=185.74 Aligned_cols=237 Identities=23% Similarity=0.417 Sum_probs=193.9
Q ss_pred eeeecccccceEE-EEECC-CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459 15 FKTLTAHSRAVSC-VKFSN-DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92 (312)
Q Consensus 15 ~~~~~~h~~~v~~-~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd 92 (312)
...+.+|.+-|.+ ++|.+ ++-+|++|+.|+.|.+|...+..++..+++|...|.+++...++. +++||.|.++++|-
T Consensus 50 ~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~ 128 (745)
T KOG0301|consen 50 THAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWR 128 (745)
T ss_pred ceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEec
Confidence 3456778887777 88875 556799999999999999999999999999999999999888887 89999999999997
Q ss_pred CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459 93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT 172 (312)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
.. ++...+.+|...|+++..-|++ .++||+.|.+|++|.- ++.++++.+|...|+.+++-+++ .|++++.||.
T Consensus 129 ~~---~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~ 201 (745)
T KOG0301|consen 129 IG---ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGS 201 (745)
T ss_pred ch---hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCce
Confidence 64 3455588999999999999987 8999999999999974 77888999999999999998765 5899999999
Q ss_pred EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459 173 CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI 252 (312)
Q Consensus 173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
|++|++ ++.++.+..++. .-+.++...+++..+++++.|+++++|+.. ++...+.-.....++..+ .++|+ +
T Consensus 202 Ir~w~~-~ge~l~~~~ght-n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~---L~NgD-I 273 (745)
T KOG0301|consen 202 IRLWDL-DGEVLLEMHGHT-NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV---LLNGD-I 273 (745)
T ss_pred EEEEec-cCceeeeeeccc-eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE---eeCCC-E
Confidence 999999 677777765543 445555667778899999999999999865 666666654444444332 24554 6
Q ss_pred EEeecCCeEEEEECC
Q 021459 253 VSGSEDNCVYVWDLQ 267 (312)
Q Consensus 253 ~~~~~dg~i~iwd~~ 267 (312)
++|+.||.|++|-..
T Consensus 274 vvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVD 288 (745)
T ss_pred EEeccCceEEEEEec
Confidence 788999999999654
No 134
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2.6e-27 Score=199.12 Aligned_cols=242 Identities=25% Similarity=0.498 Sum_probs=206.2
Q ss_pred eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459 12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW 91 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w 91 (312)
...++.+..|...|.++..-..++.+++|+.|..+-+|.......+..+.+|..+|.++.|+++..+|++|+.+|+|++|
T Consensus 18 ~~~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 18 VWDTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVW 97 (825)
T ss_pred cccchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeee
Confidence 34556778899999999997788999999999999999988777777789999999999999999999999999999999
Q ss_pred eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459 92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG 171 (312)
Q Consensus 92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
|++.. +.++++.+|...+.++.|+|-+.+.++++.|+.+++||++...|...+..|...+..+.|+|+|++++.++.|.
T Consensus 98 DleeA-k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 98 DLEEA-KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred ehhhh-hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence 99875 45778899999999999999999999999999999999998888999999998999999999999999999999
Q ss_pred eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcE
Q 021459 172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY 251 (312)
Q Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (312)
.+++||+..|+....+..+ ...+..+.++|..-+++.|+.|+++++||+++-+.+......... +.+..+.++++.
T Consensus 177 tvki~d~~agk~~~ef~~~-e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~---v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKSH-EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDG---VRSLAFNPDGKI 252 (825)
T ss_pred eeeeecccccccccccccc-cccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCC---ceeeeecCCcee
Confidence 9999999999988877543 445666779999989999999999999999876655544333333 333344466777
Q ss_pred EEEeecC
Q 021459 252 IVSGSED 258 (312)
Q Consensus 252 l~~~~~d 258 (312)
+++|-..
T Consensus 253 ~~~G~q~ 259 (825)
T KOG0267|consen 253 VLSGEQI 259 (825)
T ss_pred eecCchh
Confidence 7766544
No 135
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=2.5e-23 Score=168.84 Aligned_cols=283 Identities=19% Similarity=0.321 Sum_probs=208.3
Q ss_pred ecccccceEEEEECC--CCCEEEEE--eCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459 18 LTAHSRAVSCVKFSN--DGTLLASA--SLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA 93 (312)
Q Consensus 18 ~~~h~~~v~~~~~s~--~~~~l~t~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~ 93 (312)
+..-+..|.|++||+ .|.+|+.. +.+..+.|||.+.+......+...+.|....|+|.+..|+.....+.+.+|+.
T Consensus 150 ~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~ 229 (626)
T KOG2106|consen 150 IGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTL 229 (626)
T ss_pred eccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEc
Confidence 334678899999997 45566554 55678899999998888888888889999999997665555556889999998
Q ss_pred CCCce--eeeeeecc-cccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459 94 RTPFD--CLKTLRGH-SDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD 170 (312)
Q Consensus 94 ~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
+.+.. ....++++ ...|.|++|.+++. +++|..+|.|.+|+..+.+..+...+|...|.++....+|.++ +|+.|
T Consensus 230 ~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKD 307 (626)
T KOG2106|consen 230 RGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKD 307 (626)
T ss_pred cCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCcc
Confidence 76422 11223322 36799999999875 5789999999999998888877777999999999999999755 59999
Q ss_pred CeEEEEeCCCCce-----------eeEcccC----------------------------CCCcEEEEEECCCCCEEEEEe
Q 021459 171 GTCKIWDAGEGAC-----------LKTLIDD----------------------------KDPAVSFAKFSPNGKFILVGT 211 (312)
Q Consensus 171 ~~i~iwd~~~~~~-----------~~~~~~~----------------------------~~~~~~~~~~~~~~~~l~~~~ 211 (312)
+.|..||-.-.+. ++.+... +......++.+|+.+++++++
T Consensus 308 Rki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g 387 (626)
T KOG2106|consen 308 RKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG 387 (626)
T ss_pred ceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeecc
Confidence 9999998321110 1111100 111223356788999999999
Q ss_pred cCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCC
Q 021459 212 LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTE 291 (312)
Q Consensus 212 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~ 291 (312)
.|+.+++|+ ..+.+....-. .+ ..+....|.+ .+|.|...|.-.+.|.++..++..-.. +.++++++++|+|
T Consensus 388 qdk~v~lW~--~~k~~wt~~~~-d~---~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G 459 (626)
T KOG2106|consen 388 QDKHVRLWN--DHKLEWTKIIE-DP---AECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDG 459 (626)
T ss_pred CcceEEEcc--CCceeEEEEec-Cc---eeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCC
Confidence 999999999 33333222111 11 1222334556 999999999999999998766655444 7899999999999
Q ss_pred ceEEEeeecCCeeEEEEeecC
Q 021459 292 NKIASAGLDGDRTVRVWVQDR 312 (312)
Q Consensus 292 ~~l~~~~~dgd~~v~iw~~~~ 312 (312)
.+||.|+ .|+.|.|+.+++
T Consensus 460 ~~lAvgs--~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 460 AFLAVGS--HDNHIYIYRVSA 478 (626)
T ss_pred CEEEEec--CCCeEEEEEECC
Confidence 9999999 556899998864
No 136
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.1e-25 Score=182.44 Aligned_cols=238 Identities=19% Similarity=0.353 Sum_probs=192.8
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEE--eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR--FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD 98 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~ 98 (312)
..+.|.++.+.|||+.|++|+.-.++.|||+..-....+ +.......+.++.+||.+..++|+.||.|.|||+.+. .
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq-~ 542 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ-T 542 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc-e
Confidence 456788999999999999999999999999986544332 2223345677899999999999999999999999874 6
Q ss_pred eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459 99 CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178 (312)
Q Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (312)
.++.++||.+.+.|+..++||..|.+|+.|.+|+.||+++++.+.... ....|.++..+|++.++++|..++.+.+...
T Consensus 543 ~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 543 LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred eeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEec
Confidence 688999999999999999999999999999999999999887554322 2457999999999999999999999988876
Q ss_pred CCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC
Q 021459 179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED 258 (312)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 258 (312)
...+.. ....++..+..+.|.+.|+++++.+.|+.+..|...-|..+...... ..+.++....+.++++||+.|
T Consensus 622 skp~ky--qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~----SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 622 SKPEKY--QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES----SSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred CCccce--eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecccc----CcceeeeeccCceEEEecCCC
Confidence 543322 23446778889999999999999999999999987777655443222 223444444678999999999
Q ss_pred CeEEEEEC
Q 021459 259 NCVYVWDL 266 (312)
Q Consensus 259 g~i~iwd~ 266 (312)
....+|.+
T Consensus 696 kkATVYeV 703 (705)
T KOG0639|consen 696 KKATVYEV 703 (705)
T ss_pred cceEEEEE
Confidence 99988864
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.6e-24 Score=184.80 Aligned_cols=244 Identities=22% Similarity=0.444 Sum_probs=194.7
Q ss_pred eccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE
Q 021459 62 GHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC 141 (312)
Q Consensus 62 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~ 141 (312)
.|+.+-+.++|.|+|.+|++|+.||.|++|+.....+....+.-+...|.+++ .++++|++++.+++|.+|...+++.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia--~~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIA--CYSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEe--ecccceEEeeccceEEEeeCCCCCc
Confidence 58888999999999999999999999999987654232333333556666665 4456999999999999999988876
Q ss_pred EEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEc
Q 021459 142 TRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNY 221 (312)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~ 221 (312)
-..+.....++++++++-+|++++.|+.|-.|++.++.+....+.+.+ ++..+..+.++|++++||+.+-||.|++||+
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 555555677899999999999999999999999999887766666544 5677888999999999999999999999999
Q ss_pred CCCcEEEEEEccCC------ceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccC--CccceEEEEEcCCCce
Q 021459 222 SAGKFLKIYTGHTN------KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG--HTDSVISVTCHPTENK 293 (312)
Q Consensus 222 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~p~~~~ 293 (312)
+++...+.+.+-.. ...+....| .|++..++....|+.|.+|+....+....+.. +...+..++|+|.|++
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW-~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAW-HPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeee-cCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 98877655543211 122333344 46666777778899999999998888777654 4455999999999999
Q ss_pred EEEeeecCCeeEEEEeec
Q 021459 294 IASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 294 l~~~~~dgd~~v~iw~~~ 311 (312)
||+++.|| .|.||+++
T Consensus 247 iAAs~~~g--~I~vWnv~ 262 (933)
T KOG1274|consen 247 IAASTLDG--QILVWNVD 262 (933)
T ss_pred EeeeccCC--cEEEEecc
Confidence 99999775 89999986
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.3e-22 Score=164.63 Aligned_cols=273 Identities=17% Similarity=0.311 Sum_probs=205.6
Q ss_pred ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeee
Q 021459 22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLK 101 (312)
Q Consensus 22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~ 101 (312)
++-|.|+.|.++|. ++||..+|.|.||+..+.+.......|.+.|.+++...+|.+|- |+.|+.|..||-.-......
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccc
Confidence 36899999999887 56999999999999887776666679999999999999997665 99999999999322111122
Q ss_pred eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCC
Q 021459 102 TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG 181 (312)
Q Consensus 102 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~ 181 (312)
.+....+++..++-. ..-++.|...+.|-.=.++++..+ ..++|......++.+|+.+++++++.|+.+++|+ ..
T Consensus 324 elPe~~G~iRtv~e~--~~di~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~ 398 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEG--KGDILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DH 398 (626)
T ss_pred cCchhcCCeeEEecC--CCcEEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEcc--CC
Confidence 334455677766533 222666766666655556655443 4457888999999999999999999999999999 33
Q ss_pred ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeE
Q 021459 182 ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCV 261 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 261 (312)
+..-+.. ......++.|+|.| .+++|+..|...+.|.++...+..... .. .+.+....++|.+||.|+.|+.|
T Consensus 399 k~~wt~~--~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~---~ls~v~ysp~G~~lAvgs~d~~i 471 (626)
T KOG2106|consen 399 KLEWTKI--IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NE---QLSVVRYSPDGAFLAVGSHDNHI 471 (626)
T ss_pred ceeEEEE--ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CC---ceEEEEEcCCCCEEEEecCCCeE
Confidence 3332222 23456778899999 999999999999999988766655443 22 35556667899999999999999
Q ss_pred EEEECCch-heeeccc-CCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 262 YVWDLQQK-TMIQKLD-GHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 262 ~iwd~~~~-~~~~~~~-~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
++|.+... ..+.... .+.++|..|.|++|+++|.+-| +|-.+..|..
T Consensus 472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S--~d~eiLyW~~ 520 (626)
T KOG2106|consen 472 YIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS--GDYEILYWKP 520 (626)
T ss_pred EEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc--CceEEEEEcc
Confidence 99988643 3333322 2348999999999999999988 6678999954
No 139
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=6e-25 Score=171.34 Aligned_cols=248 Identities=21% Similarity=0.370 Sum_probs=189.6
Q ss_pred eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd 92 (312)
.+++++.+|.+.|..++++. ..++++|.|++|+.|.... .+++.+.+ ...+..+.-+..+..++||+. .|.|||
T Consensus 100 ~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD 173 (433)
T KOG0268|consen 100 ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWD 173 (433)
T ss_pred hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecc
Confidence 45678999999999999987 6788999999999998765 35555554 344566666666778888865 588999
Q ss_pred CCCCceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459 93 ARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG 171 (312)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
.+.. .+++.+.=..+.|.++.|+|-. ..|++++.|++|.+||+++.++++.+.. ...-+.++|+|..--|+++++|.
T Consensus 174 ~~R~-~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~ 251 (433)
T KOG0268|consen 174 EQRD-NPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDH 251 (433)
T ss_pred cccC-CccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccccc
Confidence 8653 3455555456789999999965 5678888999999999999887765432 33457899999888899999999
Q ss_pred eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcE
Q 021459 172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY 251 (312)
Q Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (312)
.+..+|++.-........++...+..+.|+|.|+-+++|+.|.+|+||..+.+....++ |+..-..+.+..+..+.++
T Consensus 252 nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY--htkRMq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 252 NLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY--HTKRMQHVFCVKYSMDSKY 329 (433)
T ss_pred cceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh--hHhhhheeeEEEEeccccE
Confidence 99999998755444445566677888999999999999999999999998877654443 2222222333344467899
Q ss_pred EEEeecCCeEEEEECCchh
Q 021459 252 IVSGSEDNCVYVWDLQQKT 270 (312)
Q Consensus 252 l~~~~~dg~i~iwd~~~~~ 270 (312)
+++||+|+.|++|..+..+
T Consensus 330 i~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 330 IISGSDDGNVRLWKAKASE 348 (433)
T ss_pred EEecCCCcceeeeecchhh
Confidence 9999999999999875433
No 140
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.93 E-value=1.4e-23 Score=175.91 Aligned_cols=271 Identities=21% Similarity=0.403 Sum_probs=203.3
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee
Q 021459 24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL 103 (312)
Q Consensus 24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~ 103 (312)
.|+.++|-|||..|+.+.. ..+.+||.+.+.++..+++|++.|++++|+.+|+.+++|+.|+.|.+|+..-. ..+ -
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klE-G~L--k 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLE-GIL--K 89 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccc-cee--e
Confidence 7899999999998877654 47999999999999999999999999999999999999999999999986432 122 2
Q ss_pred ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce
Q 021459 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC 183 (312)
Q Consensus 104 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 183 (312)
..|.+.|.|+.|+|-.+.+++++... .-+|........+ . .....+.+++|..||++++.|..+|+|.+-+-.....
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 35999999999999999999988653 5678765432211 1 1234678999999999999999999999986543332
Q ss_pred ee-EcccCCCCcEEEEEECCCC-----CEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeec
Q 021459 184 LK-TLIDDKDPAVSFAKFSPNG-----KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE 257 (312)
Q Consensus 184 ~~-~~~~~~~~~~~~~~~~~~~-----~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (312)
.+ ...+...+.+..++|+|+. ..+++.....++.++.+. |+.+..-..-.-.+.|+. ..++|++++.|+.
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~Cis---Yf~NGEy~LiGGs 242 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCIS---YFTNGEYILLGGS 242 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhhe---eccCCcEEEEccC
Confidence 22 2233455678888898864 356666666666666653 333321111122233443 2378999999999
Q ss_pred CCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEE
Q 021459 258 DNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308 (312)
Q Consensus 258 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw 308 (312)
|+.+.+|- +.+..+.++.....+|+.++.+|+++.++.|.-|| ++--+
T Consensus 243 dk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDG--TiACy 290 (1081)
T KOG1538|consen 243 DKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDG--TIACY 290 (1081)
T ss_pred CCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccC--eeehh
Confidence 99999995 55667777777788999999999999999999776 55443
No 141
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=1e-22 Score=170.94 Aligned_cols=294 Identities=23% Similarity=0.413 Sum_probs=218.2
Q ss_pred eeceeeecccccceEEEEECCCCC---EEEEEeCCCeEEEEeCCCcc---------------------eEEE--------
Q 021459 12 YRHFKTLTAHSRAVSCVKFSNDGT---LLASASLDKTVIIWSASSLA---------------------LVHR-------- 59 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~~~~---~l~t~~~d~~i~vw~~~~~~---------------------~~~~-------- 59 (312)
++....+.||++-|.+++|...+. +||+++.|..||+|.+.-+. .+..
T Consensus 181 f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~e 260 (764)
T KOG1063|consen 181 FARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFE 260 (764)
T ss_pred eeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehh
Confidence 455678899999999999986443 78999999999999653211 1111
Q ss_pred --eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce------eeeeeecccccEEEEEEecCCCEEEEeecCCcE
Q 021459 60 --FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD------CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESI 131 (312)
Q Consensus 60 --~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 131 (312)
+.||.+.|+++.|+|++..|++++.|.++.+|....... .+..+.+....-+..-|+|+++.+++-+..|..
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 238999999999999999999999999999998754311 122233344556788899999999999999999
Q ss_pred EEEEcCCC---eEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCC-------------------------C---
Q 021459 132 RIWEVKTG---KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG-------------------------E--- 180 (312)
Q Consensus 132 ~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-------------------------~--- 180 (312)
++|..+.. .....+.+|...|++++|+|.|+++++.+.|.+-++|-.- +
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 99984322 2233556899999999999999999999999876665311 0
Q ss_pred -------CceeeEc----------------------------------------c-------------------------
Q 021459 181 -------GACLKTL----------------------------------------I------------------------- 188 (312)
Q Consensus 181 -------~~~~~~~----------------------------------------~------------------------- 188 (312)
.+.++.+ .
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 0000000 0
Q ss_pred ---------------------cCCCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCCcEEEEEEccCCceeEEEE
Q 021459 189 ---------------------DDKDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAGKFLKIYTGHTNKKYCITS 242 (312)
Q Consensus 189 ---------------------~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 242 (312)
..++..+..++.+|+++++|++... ..|++|+..+-.....+.+|.- .++-
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL---TVT~ 577 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL---TVTR 577 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce---EEEE
Confidence 0022345567889999999998654 3589998776666666666654 3555
Q ss_pred EEEccCCcEEEEeecCCeEEEEECCchh----eeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 243 TFSVTNGKYIVSGSEDNCVYVWDLQQKT----MIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 243 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
..+.+++++|++.+.|.++.+|...+.. .....+.|..-|++..|+|++.+++|+| -|.+|++|..
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaS--RDK~VkVW~~ 647 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATAS--RDKKVKVWEE 647 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEec--CCceEEEEec
Confidence 5666899999999999999999875432 1344788999999999999999999999 5579999975
No 142
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=175.02 Aligned_cols=253 Identities=19% Similarity=0.349 Sum_probs=184.3
Q ss_pred ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEE--eeeccCCEEEEEEccCC-CeEEEEcCCCeEEE
Q 021459 14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHR--FVGHSEGISDLAWSSDS-HYICSASDDRTLRI 90 (312)
Q Consensus 14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~ 90 (312)
.++....|...|..++|.|....|++++.|.++++||+...++... +.+|...|.++||.|.. ..+++|+.||.+.|
T Consensus 92 ~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 92 QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred hhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 3556678999999999999777899999999999999999887766 88999999999999964 58899999999999
Q ss_pred EeCCCCc----------------------e----eeeeeecccccEEE---EEEecCCCEEEEeec-CCcEEEEEcCCCe
Q 021459 91 WDARTPF----------------------D----CLKTLRGHSDFVFC---VNFNPQSNLIVSGSF-DESIRIWEVKTGK 140 (312)
Q Consensus 91 wd~~~~~----------------------~----~~~~~~~~~~~v~~---~~~~~~~~~l~s~~~-dg~i~~wd~~~~~ 140 (312)
||++... + .+...+.+...|.+ +-+..|...|++++. |+.|+|||++...
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 9986321 0 01112234444555 666788899999888 9999999998765
Q ss_pred EEEEe--------eec---CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce--eeEcccCCCCcE-EEEEECCCCCE
Q 021459 141 CTRVI--------RAH---SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC--LKTLIDDKDPAV-SFAKFSPNGKF 206 (312)
Q Consensus 141 ~~~~~--------~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~ 206 (312)
+.... ..| ...+.++.....|.++++.+.|+.|.+|++.+... ...+.+.....+ .--..+|++.+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 43221 112 22466777777788888888899999999986432 111111111111 11247899999
Q ss_pred EEEEecCCeEEEEEcCCCcE-EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459 207 ILVGTLDSTLKLWNYSAGKF-LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ 268 (312)
Q Consensus 207 l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 268 (312)
+++|+.|...++|.+.+.+. ...+.+|.....++... +..-.-++++++|-.+++|++.+
T Consensus 332 l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~--pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWL--PSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeec--cccCCCceeeccCcceEEEeccC
Confidence 99999999999999877653 44566777765555332 32334467779999999999854
No 143
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.92 E-value=5.1e-23 Score=162.79 Aligned_cols=286 Identities=21% Similarity=0.341 Sum_probs=202.8
Q ss_pred ccceEEEEECCCCC-EEEEEeCCCeEEEEeCCCc---------ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEE
Q 021459 22 SRAVSCVKFSNDGT-LLASASLDKTVIIWSASSL---------ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIW 91 (312)
Q Consensus 22 ~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w 91 (312)
..+|..+.|.+... .++||+.|..|++|-+... +.+..+..|..+|+.+.|+|+|++||+|+++|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 46899999998666 9999999999999966432 2345567899999999999999999999999999999
Q ss_pred eCC--------C-----C--ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEE
Q 021459 92 DAR--------T-----P--FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVH 156 (312)
Q Consensus 92 d~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 156 (312)
... + . ....+.+.+|...+..++|+|+++.+++++.|.++++||+..|+....+..|...+..++
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 754 1 1 123456678999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCEEEEeeCCCeEEEEeCCCCceeeEcc----------cCCCC------------cEEEEEECCCCCEEEEEec--
Q 021459 157 FNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI----------DDKDP------------AVSFAKFSPNGKFILVGTL-- 212 (312)
Q Consensus 157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~----------~~~~~------------~~~~~~~~~~~~~l~~~~~-- 212 (312)
|.|-++++++-+.|...+.+.....+.+.... ..+.. -...++|+|+|.+|++...
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~ 252 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLF 252 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccccee
Confidence 99999999999988876666654433221110 00000 1223579999999988532
Q ss_pred --C-----CeEEEEEcCCCc-EEEEEEccCCceeEEEE---------------EEEccCCcEEEEeecCCeEEEEECCch
Q 021459 213 --D-----STLKLWNYSAGK-FLKIYTGHTNKKYCITS---------------TFSVTNGKYIVSGSEDNCVYVWDLQQK 269 (312)
Q Consensus 213 --d-----~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~~~~~dg~i~iwd~~~~ 269 (312)
. +..++|+...-+ ....+.........+.+ .+..+-...+|.+ ....|++||.++-
T Consensus 253 ~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq~~ 331 (434)
T KOG1009|consen 253 KVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQTL 331 (434)
T ss_pred eeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEe-ecceEEEeccccc
Confidence 1 223455432111 11111111111111110 1111222234444 4557999999876
Q ss_pred heeeccc-CCccceEEEEEcCCCceEEEeeecCCeeEEEE
Q 021459 270 TMIQKLD-GHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308 (312)
Q Consensus 270 ~~~~~~~-~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw 308 (312)
.++.... -|-..++.++|+++|..|+..|.||-.++.=+
T Consensus 332 ~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 332 EPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred cceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 6655443 37789999999999999999999997765443
No 144
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-22 Score=162.48 Aligned_cols=275 Identities=21% Similarity=0.362 Sum_probs=190.3
Q ss_pred EEEECCCCCEEEEEeCCC---eE--EEEeCCCcceEEEeeecc----CCEEEEEEcc-------CCCeEEEEcCCCeEEE
Q 021459 27 CVKFSNDGTLLASASLDK---TV--IIWSASSLALVHRFVGHS----EGISDLAWSS-------DSHYICSASDDRTLRI 90 (312)
Q Consensus 27 ~~~~s~~~~~l~t~~~d~---~i--~vw~~~~~~~~~~~~~~~----~~v~~~~~~~-------~~~~l~~~~~d~~v~~ 90 (312)
.+..-|..++|+.+..+. .+ +||+-.... .+..|. ....|++|.. .|+++|.|..|..|.|
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n---lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeI 206 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN---LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEI 206 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcc---eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEE
Confidence 455667777777765443 33 444433211 122222 2224566642 2679999999999999
Q ss_pred EeCCCCc--e---ee---------------eeeecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCeEEEEeeecC
Q 021459 91 WDARTPF--D---CL---------------KTLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKCTRVIRAHS 149 (312)
Q Consensus 91 wd~~~~~--~---~~---------------~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 149 (312)
||+.-.. . .+ ....+|++.|..++|+.. .+.|++||.|.+|++||+.++++..++..|.
T Consensus 207 WDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~ 286 (463)
T KOG0270|consen 207 WDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG 286 (463)
T ss_pred eccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC
Confidence 9974210 0 00 012368888888888765 4689999999999999999999999999899
Q ss_pred cCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCC-EEEEEecCCeEEEEEcCCC-cE
Q 021459 150 MPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGK-FILVGTLDSTLKLWNYSAG-KF 226 (312)
Q Consensus 150 ~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~-~~ 226 (312)
.+|.++.|+| ...++++|+.|+++.+.|.|......... .....+..+.|.|... .+++++.||+|+-+|.|+. +.
T Consensus 287 k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~ 365 (463)
T KOG0270|consen 287 KKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP 365 (463)
T ss_pred CceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc
Confidence 9999999999 45688999999999999998522211111 1245577788888654 6677789999999999875 78
Q ss_pred EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCc---cceEEEEEcCCCce-EEEeeecCC
Q 021459 227 LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHT---DSVISVTCHPTENK-IASAGLDGD 302 (312)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~~p~~~~-l~~~~~dgd 302 (312)
+..++.|...+.++.. ......+++|++.|+.|++|++..... .....|. +...|.++.|+-.. |+.||..
T Consensus 366 vwt~~AHd~~ISgl~~--n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k-- 440 (463)
T KOG0270|consen 366 VWTLKAHDDEISGLSV--NIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEK-- 440 (463)
T ss_pred eeEEEeccCCcceEEe--cCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCCCcceEEEecCcc--
Confidence 8889999888776654 334567899999999999999864322 1112222 23456667777654 5555533
Q ss_pred eeEEEEee
Q 021459 303 RTVRVWVQ 310 (312)
Q Consensus 303 ~~v~iw~~ 310 (312)
..+++|+.
T Consensus 441 ~~~~vwd~ 448 (463)
T KOG0270|consen 441 AVLRVWDI 448 (463)
T ss_pred ceEEEeec
Confidence 47999986
No 145
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.92 E-value=1.6e-22 Score=155.85 Aligned_cols=271 Identities=20% Similarity=0.351 Sum_probs=196.5
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEeCCCc------------ceEEEee-eccCCEEEEEEc-------cCCCeEEEEc
Q 021459 24 AVSCVKFSNDGTLLASASLDKTVIIWSASSL------------ALVHRFV-GHSEGISDLAWS-------SDSHYICSAS 83 (312)
Q Consensus 24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~------------~~~~~~~-~~~~~v~~~~~~-------~~~~~l~~~~ 83 (312)
-...++|||||..|++-+.|..+++|++..- ++...++ .....|.+-+|= |+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 3456899999999999999999999986421 0111111 123567777773 6778999999
Q ss_pred CCCeEEEEeCCCCceeeeeee--cccc---cEEEEEEecCCCEEEEeecCCcEEEEEc-CCCeEEEEe--eec-----Cc
Q 021459 84 DDRTLRIWDARTPFDCLKTLR--GHSD---FVFCVNFNPQSNLIVSGSFDESIRIWEV-KTGKCTRVI--RAH-----SM 150 (312)
Q Consensus 84 ~d~~v~~wd~~~~~~~~~~~~--~~~~---~v~~~~~~~~~~~l~s~~~dg~i~~wd~-~~~~~~~~~--~~~-----~~ 150 (312)
.+.-|++||..++. ....+. .|.+ ...+++|+|||..|++| .+..|+++|+ +.|+..... ..+ .+
T Consensus 131 r~~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ccCceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999987753 222222 2322 34689999999998875 6789999999 555432221 112 45
Q ss_pred CeEEEEEccC-CCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec-CCeEEEEEcCCCc-EE
Q 021459 151 PVTSVHFNRD-GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL-DSTLKLWNYSAGK-FL 227 (312)
Q Consensus 151 ~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~~-~~ 227 (312)
-+.+++|+|- ...++.|+....+-|+.-.....+..+ ..+...++.++|.++|+.|.+|.. +-.|..||++.-. .+
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll-ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv 287 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL-GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV 287 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeee-cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh
Confidence 5789999994 458899998888888776555555444 456677899999999999999864 6789999998644 33
Q ss_pred EEEEccCCce-eEEEEEEEccCCcEEEEeecCCeEEEEECCc-hheeecccCCccceEEEEEcCCCceEEEee
Q 021459 228 KIYTGHTNKK-YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ-KTMIQKLDGHTDSVISVTCHPTENKIASAG 298 (312)
Q Consensus 228 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~ 298 (312)
..+..|.... ..|.. -..+.+++|++|+.||.|++||+.. +..+..+..|..-|+.++++|--+.+++++
T Consensus 288 ~~L~rhv~~TNQRI~F-Dld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 288 YALERHVGDTNQRILF-DLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred hhhhhhccCccceEEE-ecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 3444454422 22322 2236799999999999999999987 555667778899999999999988888887
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=3.4e-23 Score=167.84 Aligned_cols=261 Identities=19% Similarity=0.266 Sum_probs=201.6
Q ss_pred ceEEEEECCCCCE-EEEEeCCCeEEEEeCCCc----ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce
Q 021459 24 AVSCVKFSNDGTL-LASASLDKTVIIWSASSL----ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD 98 (312)
Q Consensus 24 ~v~~~~~s~~~~~-l~t~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~ 98 (312)
.+..+.|+....+ +++.+.|+.+++|.-... ..+.+..+. .-.|++......++++|+..+.|+|||++. ..
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl 112 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRA-KL 112 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHH-HH
Confidence 4888999876643 344567889999964322 122222222 233555555568999999999999999984 46
Q ss_pred eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec-CcCeEEEEEccCCCE-EEEeeCCCeEEEE
Q 021459 99 CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH-SMPVTSVHFNRDGSL-IVSGSHDGTCKIW 176 (312)
Q Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~~~~~d~~i~iw 176 (312)
+.+.+++|.+.|.++.|+....++++++..|.|.+..+.++.....+... ...|+-+.|+|..+. |.+++.+|.|.+|
T Consensus 113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 67888999999999999999999999999999999999998877666544 344678999997764 5578899999999
Q ss_pred eCCCCceeeEcccCCCCcEEEEEECCCCC-EEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe
Q 021459 177 DAGEGACLKTLIDDKDPAVSFAKFSPNGK-FILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG 255 (312)
Q Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 255 (312)
|+.....+......+..+...++|+|... +|++.+.|..|.+||.+..+....+..... +....+.++|.+|+.|
T Consensus 193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~P----lstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 193 DVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHP----LSTVAFSECGTYLCAG 268 (673)
T ss_pred eccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCC----cceeeecCCceEEEee
Confidence 99877777666666777777888999655 666779999999999987776655543222 3334556889999999
Q ss_pred ecCCeEEEEECCc-hheeecccCCccceEEEEEcCCC
Q 021459 256 SEDNCVYVWDLQQ-KTMIQKLDGHTDSVISVTCHPTE 291 (312)
Q Consensus 256 ~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~p~~ 291 (312)
+..|.|..||++. ..++..+..|...|.+|+|.|..
T Consensus 269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 269 NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999999975 46678889999999999998875
No 147
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.2e-22 Score=155.99 Aligned_cols=237 Identities=14% Similarity=0.267 Sum_probs=171.3
Q ss_pred EEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee
Q 021459 67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR 146 (312)
Q Consensus 67 v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 146 (312)
..++.|++.|.+||+|+.||.|.+||+.+- ..-+.+.+|..+|.+++|+++|++|++++.|..|.+||+..|.+.+.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 678999999999999999999999999873 4566788999999999999999999999999999999999999887775
Q ss_pred ecCcCeEEEEEccCCC-EEEEeeCCCeEEEEeCCCCceeeEccc-CC----CCcEEEEEECCCCCEEEEEecCCeEEEEE
Q 021459 147 AHSMPVTSVHFNRDGS-LIVSGSHDGTCKIWDAGEGACLKTLID-DK----DPAVSFAKFSPNGKFILVGTLDSTLKLWN 220 (312)
Q Consensus 147 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~l~~~~~d~~i~v~d 220 (312)
...+|+.+.|+|... .+++.-.+..-.+.++..+. ...+. .. ........|++.|+++++|+..|.+.++|
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 467999999999443 33333333334444444321 11111 11 11222335899999999999999999999
Q ss_pred cCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch---------heeecccC--CccceEEEEEcC
Q 021459 221 YSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK---------TMIQKLDG--HTDSVISVTCHP 289 (312)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~--h~~~v~~l~~~p 289 (312)
..+.+++..+.... ...+.....+..+++|+.-+.|..|+.|+++.. +..++++. ....=.++.|+.
T Consensus 182 a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~ 259 (405)
T KOG1273|consen 182 AETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG 259 (405)
T ss_pred cchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC
Confidence 99988877665433 122333334467999999999999999998621 11122211 111224566888
Q ss_pred CCceEEEeeecCCeeEEEEee
Q 021459 290 TENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 290 ~~~~l~~~~~dgd~~v~iw~~ 310 (312)
+|.++++++. ....++||.-
T Consensus 260 dgeYv~a~s~-~aHaLYIWE~ 279 (405)
T KOG1273|consen 260 DGEYVCAGSA-RAHALYIWEK 279 (405)
T ss_pred CccEEEeccc-cceeEEEEec
Confidence 9999888874 4578999964
No 148
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=8.5e-23 Score=163.97 Aligned_cols=243 Identities=17% Similarity=0.254 Sum_probs=194.2
Q ss_pred cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC-ceeeeeeecccccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCeE
Q 021459 64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTP-FDCLKTLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKC 141 (312)
Q Consensus 64 ~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~ 141 (312)
.++|+++.|+|....|++++.|+.+++|.+... ...++.+.-...+|.++.|.|+|. .+++++....++.||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 468999999999999999999999999987542 123445544567899999999998 899999999999999988765
Q ss_pred EEEe--eec-CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEE
Q 021459 142 TRVI--RAH-SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKL 218 (312)
Q Consensus 142 ~~~~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v 218 (312)
.+.- .++ ...+.....++++++++..+..|.|.+....+++.+..+. ....+....|+.+++.|++.+.+|.|.+
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 4432 222 2346678889999999999999999999988888777663 3456788889999999999999999999
Q ss_pred EEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCc------hheeecccCCccceEEEEEcCCCc
Q 021459 219 WNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ------KTMIQKLDGHTDSVISVTCHPTEN 292 (312)
Q Consensus 219 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~h~~~v~~l~~~p~~~ 292 (312)
||++...++..+..... ..... .....++.+||+|+..|.|.|||.++ .+++..+..-...|..++|+|+.+
T Consensus 371 ~nl~~~~~~~rf~D~G~-v~gts-~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGS-VHGTS-LCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred EecCCcceEEEEeecCc-cceee-eeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 99999988887764322 22222 23346789999999999999999643 345566666677899999999999
Q ss_pred eEEEeeecCCeeEEEEee
Q 021459 293 KIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 293 ~l~~~~~dgd~~v~iw~~ 310 (312)
.||.+|.-.+..+|+=++
T Consensus 449 iLAiaS~~~knalrLVHv 466 (514)
T KOG2055|consen 449 ILAIASRVKKNALRLVHV 466 (514)
T ss_pred hhhhhhhccccceEEEec
Confidence 999999888888888554
No 149
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.4e-23 Score=165.48 Aligned_cols=233 Identities=19% Similarity=0.402 Sum_probs=170.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCcceE---------------------EEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEE
Q 021459 34 GTLLASASLDKTVIIWSASSLALV---------------------HRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIW 91 (312)
Q Consensus 34 ~~~l~t~~~d~~i~vw~~~~~~~~---------------------~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~w 91 (312)
|+++|.|..|-.|.|||+.-...+ ....+|+..|..++|+.. .+.||+|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 679999999999999987521100 012368889999999876 5689999999999999
Q ss_pred eCCCCceeeeeeecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCeEE-EEeeecCcCeEEEEEccCC-CEEEEee
Q 021459 92 DARTPFDCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKCT-RVIRAHSMPVTSVHFNRDG-SLIVSGS 168 (312)
Q Consensus 92 d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~~~~ 168 (312)
|+.++ ++..++..|.+.|.++.|+|. ...|++|+.|++|.+.|.+..... ..++ ..+.|-.++|.|.. ..+++++
T Consensus 272 D~~~g-~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 272 DVDTG-KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EcCCC-CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEec
Confidence 99986 567778889999999999985 468999999999999999842221 2222 24568889999854 5678889
Q ss_pred CCCeEEEEeCCCC-ceeeEcccCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCcEEEEEEccC---CceeEEEEE
Q 021459 169 HDGTCKIWDAGEG-ACLKTLIDDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGKFLKIYTGHT---NKKYCITST 243 (312)
Q Consensus 169 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~ 243 (312)
.||+++-+|+|+. +.+.++. .++..++.+++++.- .++++++.|+.|++|++......... .|. ....|. .
T Consensus 350 ddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~-~~~~~~~rl~c~--~ 425 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK-EHSFKLGRLHCF--A 425 (463)
T ss_pred CCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc-cccccccceeec--c
Confidence 9999999999986 5555554 455667777776643 47888999999999998654331111 111 111121 1
Q ss_pred EEccCCcEEEEeecCCeEEEEECCchhee
Q 021459 244 FSVTNGKYIVSGSEDNCVYVWDLQQKTMI 272 (312)
Q Consensus 244 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 272 (312)
..+...-+++.|+..+.+++||+.+...+
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cCCCcceEEEecCccceEEEeecccChhH
Confidence 22233457899999999999999776544
No 150
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.7e-22 Score=154.32 Aligned_cols=242 Identities=21% Similarity=0.412 Sum_probs=169.7
Q ss_pred EEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc----eeee-eeecccccEEEEEEecCCCE-EEEeecCCcE
Q 021459 58 HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF----DCLK-TLRGHSDFVFCVNFNPQSNL-IVSGSFDESI 131 (312)
Q Consensus 58 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~----~~~~-~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i 131 (312)
..+++|...|++++|+.||++|++++.|+.|++|+++.-. ++++ .++ -+.-..+.|+||.+- +++.-...++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCCEE
Confidence 3567999999999999999999999999999999986521 1111 111 123456889999875 4455566679
Q ss_pred EEEEcCCC---eEE---------EEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEE
Q 021459 132 RIWEVKTG---KCT---------RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAK 199 (312)
Q Consensus 132 ~~wd~~~~---~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 199 (312)
++|-+... ... ..-+.|+.++..+-...++.++++++.|..|.+|+++ |+.+..+.... .....++
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq-~~n~~aa 235 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ-SSNYDAA 235 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc-cccccee
Confidence 99976432 111 1113456677778888889999999999999999998 77777664333 3345677
Q ss_pred ECCCCCEEEEEecCCeEEEEEcC---CCc-----EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch--
Q 021459 200 FSPNGKFILVGTLDSTLKLWNYS---AGK-----FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK-- 269 (312)
Q Consensus 200 ~~~~~~~l~~~~~d~~i~v~d~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-- 269 (312)
.+|+|+++++++.--.|++|..- .|+ .+..+.+|... +....+.++.+.+++.+.||.+++||+.-.
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa---V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA---VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh---eeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 99999999999998999999863 232 22345677665 333444578899999999999999998422
Q ss_pred --h---eeecc----cCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 270 --T---MIQKL----DGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 270 --~---~~~~~----~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
+ .++.. ..-.+.-..|+++|.++.|+.+. | .+++++.
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~--g-s~l~~~~ 358 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF--G-SDLKVFA 358 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec--C-CceEEEE
Confidence 1 11111 12233455999999999998765 2 3566554
No 151
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.92 E-value=2.9e-20 Score=159.90 Aligned_cols=289 Identities=35% Similarity=0.670 Sum_probs=221.8
Q ss_pred eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc-eEEEeeeccC-CEEEEEE-ccCCC-eEEEEcC-CCeEEEE
Q 021459 17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA-LVHRFVGHSE-GISDLAW-SSDSH-YICSASD-DRTLRIW 91 (312)
Q Consensus 17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~-~~~~~~~~~~-~v~~~~~-~~~~~-~l~~~~~-d~~v~~w 91 (312)
.+..|...+.++.+.+.+..++.++.|+.+.+|+..... ....+.++.. .+..+.+ .+++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456899999999999999999999999999999998876 6666666443 6777777 77777 5555444 8999999
Q ss_pred eCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC-EEEEeeC
Q 021459 92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS-LIVSGSH 169 (312)
Q Consensus 92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~ 169 (312)
+..........+..|...+..++|+|++..+++++. ++.+++|++..+.....+..|...+.+++|+|++. .+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 987633556677889999999999999998888885 99999999998888888888999999999999998 5555599
Q ss_pred CCeEEEEeCCCCceee-EcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE-EEEEEccCCceeEEEEEEEcc
Q 021459 170 DGTCKIWDAGEGACLK-TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF-LKIYTGHTNKKYCITSTFSVT 247 (312)
Q Consensus 170 d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 247 (312)
|+.+++||...+.... .+..+. ... ...|+|++..+++++.|+.+++|+...... +..+..|.....++ ...+
T Consensus 220 d~~i~~wd~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~ 294 (466)
T COG2319 220 DGTIRLWDLSTGKLLRSTLSGHS-DSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV---AFSP 294 (466)
T ss_pred CCcEEEEECCCCcEEeeecCCCC-cce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEE---EECC
Confidence 9999999988766666 343332 222 337999998899999999999999987664 44444454433333 3345
Q ss_pred CCcEEEEeecCCeEEEEECCchheeeccc--CCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 248 NGKYIVSGSEDNCVYVWDLQQKTMIQKLD--GHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
++..+++++.|+.+.+||........... .|...+..+.+.+++..++.++. .+..+++|+..
T Consensus 295 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~ 359 (466)
T COG2319 295 DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS-DDGTIRLWDLR 359 (466)
T ss_pred CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeec-CCCcEEeeecC
Confidence 67778779999999999998776665554 78778999999333245655532 23678888764
No 152
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.8e-24 Score=170.46 Aligned_cols=296 Identities=23% Similarity=0.378 Sum_probs=232.3
Q ss_pred eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEe-eeccCCEEEEEEccC--CCeEEEEcCCCeEE
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRF-VGHSEGISDLAWSSD--SHYICSASDDRTLR 89 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~ 89 (312)
.....|..|.+-|+.|.|...|..|++|+.|..|.+||...++....+ .+|...|..-.|.|. ..-+++++.||.++
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 344567889999999999999999999999999999999988776555 579999988889884 45789999999999
Q ss_pred EEeCCCCc--eeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEee---ecCc---CeEEEEEccC
Q 021459 90 IWDARTPF--DCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIR---AHSM---PVTSVHFNRD 160 (312)
Q Consensus 90 ~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~---~v~~~~~~~~ 160 (312)
+=.+.... +..+.+..|.+.|..++..|+. +.|++++.|+.+.-.|++.+.....+. .+.. ....++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 87654322 2244566788999999998865 569999999999999998775443332 2222 4678888885
Q ss_pred CC-EEEEeeCCCeEEEEeCCCCce------eeEc-----ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC--C--
Q 021459 161 GS-LIVSGSHDGTCKIWDAGEGAC------LKTL-----IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA--G-- 224 (312)
Q Consensus 161 ~~-~l~~~~~d~~i~iwd~~~~~~------~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~--~-- 224 (312)
.. .+++++.|...++||.+.-.. +..+ .......|+.++++.++.-|+++..|-.|++|.... +
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 54 899999999999999875321 1222 223345688899998888888888899999995432 2
Q ss_pred --------cEEE-EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEE
Q 021459 225 --------KFLK-IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIA 295 (312)
Q Consensus 225 --------~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~ 295 (312)
..++ .+++|......-.+.|+.|..+++++|++-|.|.||+-.+.+.+..+++-..-|+||.-||.-..||
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence 1223 3788877655555667888899999999999999999999999999988777999999999999999
Q ss_pred EeeecCCeeEEEEee
Q 021459 296 SAGLDGDRTVRVWVQ 310 (312)
Q Consensus 296 ~~~~dgd~~v~iw~~ 310 (312)
+.|.|. -|+||-+
T Consensus 453 sSGid~--DVKIWTP 465 (559)
T KOG1334|consen 453 SSGIDH--DVKIWTP 465 (559)
T ss_pred ccCCcc--ceeeecC
Confidence 999886 5999965
No 153
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.9e-22 Score=152.56 Aligned_cols=241 Identities=24% Similarity=0.414 Sum_probs=185.5
Q ss_pred cccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC---CCeEEEEcCCCeEEEEeCC
Q 021459 19 TAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD---SHYICSASDDRTLRIWDAR 94 (312)
Q Consensus 19 ~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~v~~wd~~ 94 (312)
.+|+-.|+.+.|-| |..++.+++-|.+++|||.++.+....+. -.+.|++-+++|- ..++|+|..+-.|++-|+.
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 46889999999998 77789999999999999999987765554 4577888899883 3477888888899999998
Q ss_pred CCceeeeeeecccccEEEEEEecCCCE-EEEeecCCcEEEEEcCCC-eEEEE--------------eeecCcCeEEEEEc
Q 021459 95 TPFDCLKTLRGHSDFVFCVNFNPQSNL-IVSGSFDESIRIWEVKTG-KCTRV--------------IRAHSMPVTSVHFN 158 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~~wd~~~~-~~~~~--------------~~~~~~~v~~~~~~ 158 (312)
.+ .....+.||.+.|.++.|+|..++ |++|+.||.|++||++.- .+... -.+|.+.+..++|+
T Consensus 177 SG-s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 177 SG-SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred CC-cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 86 567788999999999999998875 789999999999999743 22222 23566789999999
Q ss_pred cCCCEEEEeeCCCeEEEEeCCCCceeeEccc----CC--CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc
Q 021459 159 RDGSLIVSGSHDGTCKIWDAGEGACLKTLID----DK--DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG 232 (312)
Q Consensus 159 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~ 232 (312)
.++.++++++.|..+++|+..+|+....... .. ...+. +. +.+...++.--.++.+.++.+-.+..++.+..
T Consensus 256 Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 256 SDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLST 333 (397)
T ss_pred ccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeec
Confidence 9999999999999999999987764322111 11 11122 22 33334444444568999999999999999988
Q ss_pred cCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459 233 HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266 (312)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 266 (312)
|... +.+.+..++-+.+.+|..|+.|..|-.
T Consensus 334 h~k~---i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 334 HLKR---INCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ccce---eeEEeecCchhhhhccccCCccccccc
Confidence 8554 444555566677899999999999965
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.8e-24 Score=188.75 Aligned_cols=277 Identities=23% Similarity=0.411 Sum_probs=206.0
Q ss_pred EEEECCCCC-EEEEE----------eCCCeEEEEeCCC--cc----eEEEeeeccCCEEEEEEccCCCe----EEEEcCC
Q 021459 27 CVKFSNDGT-LLASA----------SLDKTVIIWSASS--LA----LVHRFVGHSEGISDLAWSSDSHY----ICSASDD 85 (312)
Q Consensus 27 ~~~~s~~~~-~l~t~----------~~d~~i~vw~~~~--~~----~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~d 85 (312)
.++|+|++. ++++| +.+.++.+|.+.. .. ....+. -....+.++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 368999886 45543 3345566664432 21 222221 2456789999987664 8889999
Q ss_pred CeEEEEeCCC-----CceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEee--ecCcCeEEEEE
Q 021459 86 RTLRIWDART-----PFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIR--AHSMPVTSVHF 157 (312)
Q Consensus 86 ~~v~~wd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~ 157 (312)
|.|.+||... ....+.+...|.+.|..+.|++.. ++|++|+.||.|.|||+++-+...... .....|.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 9999999754 123456677899999999999965 599999999999999998755444331 23456999999
Q ss_pred ccC-CCEEEEeeCCCeEEEEeCCCCceeeEcccCCC-CcEEEEEECCCCC-EEEEEecCC---eEEEEEcCCCc-EEEEE
Q 021459 158 NRD-GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD-PAVSFAKFSPNGK-FILVGTLDS---TLKLWNYSAGK-FLKIY 230 (312)
Q Consensus 158 ~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~~~~~d~---~i~v~d~~~~~-~~~~~ 230 (312)
+.. ...|++++.+|.+.|||++..+.+..+..... ..++.+.|+|+.. .+++++.|. .|.+||+|... .++++
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~ 249 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL 249 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh
Confidence 874 34678899999999999998866554433222 3467889999874 566666553 68999998654 56778
Q ss_pred EccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCc-eEEEeeecCCeeEEEE
Q 021459 231 TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN-KIASAGLDGDRTVRVW 308 (312)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~~~~~dgd~~v~iw 308 (312)
++|...... ..+...+.++|++++.|+.|.+|+.++++.+..+.....++..+.|.|... .++.++.||. |-|+
T Consensus 250 ~~H~~Gils--lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk--I~I~ 324 (1049)
T KOG0307|consen 250 EGHQRGILS--LSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK--ISIY 324 (1049)
T ss_pred cccccceee--eccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccc--eeee
Confidence 888876544 355667779999999999999999999999999998889999999999876 8888898874 4444
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=4.7e-23 Score=167.04 Aligned_cols=262 Identities=20% Similarity=0.352 Sum_probs=200.9
Q ss_pred CCCeEEEEeCCCcceEEEeeecc--CCEEEEEEccCCC-eEEEEcCCCeEEEEeCCCCc---eeeeeeecccccEEEEEE
Q 021459 42 LDKTVIIWSASSLALVHRFVGHS--EGISDLAWSSDSH-YICSASDDRTLRIWDARTPF---DCLKTLRGHSDFVFCVNF 115 (312)
Q Consensus 42 ~d~~i~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~-~l~~~~~d~~v~~wd~~~~~---~~~~~~~~~~~~v~~~~~ 115 (312)
....+++||+........+..|+ .++.+++|+.... .+++.+.|..+++|.-..+. ..+....+ +.-.|++.
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~ 87 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVAC 87 (673)
T ss_pred cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhh
Confidence 33479999998776655555443 3588999987664 33344568889999654321 11222222 24456666
Q ss_pred ecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcE
Q 021459 116 NPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAV 195 (312)
Q Consensus 116 ~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (312)
.....++++|+..+.|++||++...+.+.++.|+..|+++.+.....++++++..|.|.+..+.++.....+....+..+
T Consensus 88 ~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 88 ASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSV 167 (673)
T ss_pred hhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeE
Confidence 66668999999999999999998888888999999999999999999999999999999999998887777766656778
Q ss_pred EEEEECCCCCEEE-EEecCCeEEEEEcCCCcEEEEE-EccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheee
Q 021459 196 SFAKFSPNGKFIL-VGTLDSTLKLWNYSAGKFLKIY-TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ 273 (312)
Q Consensus 196 ~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (312)
..+.++|..+.++ +++.+|.|.+||......+..+ ..|..+ +-.++|++.+..+|++.+.|..|.+||........
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP--~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP--CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC--cCcceecCCccceEEEecccceEEEeecccccccc
Confidence 8899999887554 5688999999999876655433 334433 34457788889999999999999999998877666
Q ss_pred cccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 274 KLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 274 ~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
.+. ...+...|+|.++|-+|++|+..| .|..||+
T Consensus 246 ~l~-y~~Plstvaf~~~G~~L~aG~s~G--~~i~YD~ 279 (673)
T KOG4378|consen 246 RLT-YSHPLSTVAFSECGTYLCAGNSKG--ELIAYDM 279 (673)
T ss_pred eee-ecCCcceeeecCCceEEEeecCCc--eEEEEec
Confidence 654 466889999999999999998554 6777765
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=1.2e-21 Score=151.15 Aligned_cols=287 Identities=24% Similarity=0.410 Sum_probs=200.2
Q ss_pred ecccccceEEEEECC-----CCCEEEEEeCCCeEEEEeCCCcc---eEEEee--eccCCEEEEEEccC----CCeEEEEc
Q 021459 18 LTAHSRAVSCVKFSN-----DGTLLASASLDKTVIIWSASSLA---LVHRFV--GHSEGISDLAWSSD----SHYICSAS 83 (312)
Q Consensus 18 ~~~h~~~v~~~~~s~-----~~~~l~t~~~d~~i~vw~~~~~~---~~~~~~--~~~~~v~~~~~~~~----~~~l~~~~ 83 (312)
.+.|+.+|..++|.+ +-..+||+|.+ .+.+|+..... .+..+. .|.+....++|+-+ ..+|+.++
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 457999999999984 22356777664 68888765432 233322 36677788888754 34889999
Q ss_pred CCCeEEEEeCCCCceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEe---eecCcCeEEEEEcc
Q 021459 84 DDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVI---RAHSMPVTSVHFNR 159 (312)
Q Consensus 84 ~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~~~ 159 (312)
.-|.|++.|+... ++.+.+.+|...|..+.+.|+. +++++++.|.+|++|++++..++..+ .+|...|.++.|++
T Consensus 113 ~~GvIrVid~~~~-~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~ 191 (385)
T KOG1034|consen 113 YLGVIRVIDVVSG-QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSL 191 (385)
T ss_pred ceeEEEEEecchh-hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcC
Confidence 9999999999774 6778889999999999999964 68999999999999999999999877 56899999999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCceeeEccc------C-----------CCCcEEEEEECC--------CCCEEEEEecCC
Q 021459 160 DGSLIVSGSHDGTCKIWDAGEGACLKTLID------D-----------KDPAVSFAKFSP--------NGKFILVGTLDS 214 (312)
Q Consensus 160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------~-----------~~~~~~~~~~~~--------~~~~l~~~~~d~ 214 (312)
+|.++++++.|..+++|++...+....+.. . +-+..+....+. -|+++++-+-++
T Consensus 192 ~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscen 271 (385)
T KOG1034|consen 192 DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCEN 271 (385)
T ss_pred CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCc
Confidence 999999999999999999874332111100 0 001110111111 157788888889
Q ss_pred eEEEEEc-CCCcEEE-------------EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhee--ecccC-
Q 021459 215 TLKLWNY-SAGKFLK-------------IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI--QKLDG- 277 (312)
Q Consensus 215 ~i~v~d~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~- 277 (312)
.|..|-. +-++.+. .+.-..-..+.+...+. +-++.||.|...|.|.+||+...+.. .++..
T Consensus 272 aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d-~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 272 AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD-PWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeec-HHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 9999976 2111111 11111112223333332 34678999999999999999876553 22221
Q ss_pred -CccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 278 -HTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 278 -h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
-...|...+|+.++..|+....|+ +|.=|+
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~--~Vwrwd 381 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDG--TVWRWD 381 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCC--cEEEEE
Confidence 235688999999999999998664 544443
No 157
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=3.8e-22 Score=156.56 Aligned_cols=239 Identities=24% Similarity=0.410 Sum_probs=180.9
Q ss_pred eeccCCEEEEEEccCC--CeEEEEcCCCeEEEEeCCCC---------------ceeeeeeecccccEEEEEEecCC-CEE
Q 021459 61 VGHSEGISDLAWSSDS--HYICSASDDRTLRIWDARTP---------------FDCLKTLRGHSDFVFCVNFNPQS-NLI 122 (312)
Q Consensus 61 ~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~wd~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~-~~l 122 (312)
..|.+.++.+.-++-+ .+.++-+..|.|+||++... .+.+.++.+|.+.-+.++|+|-. ..|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3577777777777654 46667788999999998531 23456677888888999999933 358
Q ss_pred EEeecCCcEEEEEcCCCeEE---EEeeecCcCeEEEEEccCC-CEEEEeeCCCeEEEEeCCCCceee-EcccCCCCcEEE
Q 021459 123 VSGSFDESIRIWEVKTGKCT---RVIRAHSMPVTSVHFNRDG-SLIVSGSHDGTCKIWDAGEGACLK-TLIDDKDPAVSF 197 (312)
Q Consensus 123 ~s~~~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~ 197 (312)
++|..-+.|++|...++.-. ..+.+|...|-.+.|+|.. ..|++|+.||.|+|||+|.+.... .+...+...+..
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 88888899999998876532 3455699999999999954 588999999999999999873221 222456678889
Q ss_pred EEECCCCCEEEEEecCCeEEEEEcCC---CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe---
Q 021459 198 AKFSPNGKFILVGTLDSTLKLWNYSA---GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM--- 271 (312)
Q Consensus 198 ~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--- 271 (312)
+.|+.+..+||+|+.||+++|||++. +..+..+..|..++.++ .+.+.+...|++++.|..|.+||+.-..-
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsi--eW~p~e~s~iaasg~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSI--EWHPHEDSVIAASGEDNQITIWDLSVEADEEE 385 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEE--EeccccCceEEeccCCCcEEEEEeeccCChhh
Confidence 99999988999999999999999975 45677888888876666 35555667889999999999999842111
Q ss_pred -------------eecccCC--ccceEEEEEcCCC-ceEEEeeecC
Q 021459 272 -------------IQKLDGH--TDSVISVTCHPTE-NKIASAGLDG 301 (312)
Q Consensus 272 -------------~~~~~~h--~~~v~~l~~~p~~-~~l~~~~~dg 301 (312)
.+.+--| +..+..|.||+.. .++++.+.||
T Consensus 386 ~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 386 IDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred hccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 1122235 4578999999974 5788888887
No 158
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=8.5e-23 Score=160.15 Aligned_cols=171 Identities=26% Similarity=0.492 Sum_probs=143.2
Q ss_pred CceeceeeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcceE---EEeeeccCCEEEEEEccC-CCeEEEEcC
Q 021459 10 KPYRHFKTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLALV---HRFVGHSEGISDLAWSSD-SHYICSASD 84 (312)
Q Consensus 10 ~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l~~~~~ 84 (312)
+..+++.++.+|...=++|.||| ....|+||..-+.|++|...++.-. ..+.+|+..|..|+|+|. ...+++|+-
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec
Confidence 34566778999999999999999 3345889888899999988875432 345679999999999996 468999999
Q ss_pred CCeEEEEeCCCCce-eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC---CeEEEEeeecCcCeEEEEEccC
Q 021459 85 DRTLRIWDARTPFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT---GKCTRVIRAHSMPVTSVHFNRD 160 (312)
Q Consensus 85 d~~v~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~---~~~~~~~~~~~~~v~~~~~~~~ 160 (312)
||+|+|||++.+.+ .....+.|.+.|..++|+....+|++|+.||++++||+++ ++.+..++.|..+|+++.|+|.
T Consensus 279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence 99999999987532 2333478999999999999888999999999999999975 5567789999999999999995
Q ss_pred -CCEEEEeeCCCeEEEEeCCC
Q 021459 161 -GSLIVSGSHDGTCKIWDAGE 180 (312)
Q Consensus 161 -~~~l~~~~~d~~i~iwd~~~ 180 (312)
...|++++.|.+|.+||+.-
T Consensus 359 e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 359 EDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred cCceEEeccCCCcEEEEEeec
Confidence 45788899999999999853
No 159
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.1e-22 Score=153.53 Aligned_cols=271 Identities=22% Similarity=0.364 Sum_probs=193.0
Q ss_pred CEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEcc--CCCeEEEEcCCCeEEEEeCCCCceee-eeeeccc-ccE
Q 021459 35 TLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS--DSHYICSASDDRTLRIWDARTPFDCL-KTLRGHS-DFV 110 (312)
Q Consensus 35 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~wd~~~~~~~~-~~~~~~~-~~v 110 (312)
..+|++-.+|.|++||..+++.+..+++++..++.++|.. ....+.+|+.||.|++||++...+.. ....++. .+-
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999987 46789999999999999998754332 2334444 345
Q ss_pred EEEEEecCCCEEEEeec----CCcEEEEEcCCCeE-EEEe-eecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCCCce
Q 021459 111 FCVNFNPQSNLIVSGSF----DESIRIWEVKTGKC-TRVI-RAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEGAC 183 (312)
Q Consensus 111 ~~~~~~~~~~~l~s~~~----dg~i~~wd~~~~~~-~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~ 183 (312)
.|++.+...+.+++|.. +-.|.+||.+..+. +..+ ..|...|+++.|+| +.++|++|+.||.+.+||+.....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 66666656677777754 45699999997765 4443 57999999999999 567999999999999999875421
Q ss_pred ---eeEcccCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCcEEEEEEccC----------CceeEEEEEEEccCC
Q 021459 184 ---LKTLIDDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGKFLKIYTGHT----------NKKYCITSTFSVTNG 249 (312)
Q Consensus 184 ---~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 249 (312)
+.... .....+..+.|..++ +.+.+-+...+..+|++..+.....+.... ...+.+.. ..+.+.
T Consensus 201 eDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~ 278 (376)
T KOG1188|consen 201 EDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDK 278 (376)
T ss_pred hhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCc
Confidence 11112 234557777787666 468888899999999998876433222110 11122322 223444
Q ss_pred cEEEEeec-CCeEEEEECCc------hheeecccC-CccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 250 KYIVSGSE-DNCVYVWDLQQ------KTMIQKLDG-HTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 250 ~~l~~~~~-dg~i~iwd~~~------~~~~~~~~~-h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
.+++.++. -|...++-+.. .+.+..+++ |..-|+++.|...+..+.|||.| +.|.+|.
T Consensus 279 ~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGED--G~l~~Wk 344 (376)
T KOG1188|consen 279 DTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGED--GLLQAWK 344 (376)
T ss_pred ceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCC--ceEEEEe
Confidence 55555444 56666664432 233445565 67788888888888999999966 5899998
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=3.8e-19 Score=152.95 Aligned_cols=290 Identities=40% Similarity=0.714 Sum_probs=218.4
Q ss_pred eceeeecccccceEEEEECCCCCEEEEEeC-CCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC-eEEEEcCCCeEEE
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASL-DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH-YICSASDDRTLRI 90 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~ 90 (312)
.....+..|...|..++|+|++..+++++. |+.+++|+......+..+.+|...|.+++|+|++. .+++++.|+.+++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 445667889999999999999998888885 99999999998888888888999999999999998 5555589999999
Q ss_pred EeCCCCceeee-eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE-EEEeeecCcCeEEEEEccCCCEEEEee
Q 021459 91 WDARTPFDCLK-TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC-TRVIRAHSMPVTSVHFNRDGSLIVSGS 168 (312)
Q Consensus 91 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
||.... .... .+.+|.... ...|+|++..+++++.++.+++|++..... ...+..|...+.++.|.|++..+++++
T Consensus 226 wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 226 WDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred EECCCC-cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence 988743 3444 577777765 448999998899999999999999987664 444456788999999999888888899
Q ss_pred CCCeEEEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459 169 HDGTCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246 (312)
Q Consensus 169 ~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
.|+.+.+||........... ..+...+..+.+.+++..++.+ ..|+.+.+|+............... .....+..
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 380 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN---VLSVSFSP 380 (466)
T ss_pred CCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce---EEEEEECC
Confidence 99889999988776555443 1233346666664343566666 6788999999877762222222211 22223333
Q ss_pred cCCcEEEE-eecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 247 TNGKYIVS-GSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 247 ~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
+ ..+.. +..++.+.+|+............+...+....+.+++..+++++ .+.++++|+..
T Consensus 381 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 442 (466)
T COG2319 381 -D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGS--SDNTIRLWDLK 442 (466)
T ss_pred -C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEec--CCCcEEEEecc
Confidence 3 34444 78999999999988777666554436788889999998888866 34689999763
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.9e-23 Score=181.81 Aligned_cols=245 Identities=16% Similarity=0.351 Sum_probs=189.7
Q ss_pred cceEEEEECCCCCE----EEEEeCCCeEEEEeCCCc------ceEEEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEE
Q 021459 23 RAVSCVKFSNDGTL----LASASLDKTVIIWSASSL------ALVHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIW 91 (312)
Q Consensus 23 ~~v~~~~~s~~~~~----l~t~~~d~~i~vw~~~~~------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~w 91 (312)
..-+.|+|.+.+.. ||.|..||.|.+|+.... ..+.....|++.|..+.|++. ++.||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45678999987665 899999999999997652 345566789999999999996 5599999999999999
Q ss_pred eCCCCceeeee-eecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCeEEEEeeecCc--CeEEEEEccCCC-EEEE
Q 021459 92 DARTPFDCLKT-LRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM--PVTSVHFNRDGS-LIVS 166 (312)
Q Consensus 92 d~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~~~~~~-~l~~ 166 (312)
|+.+....... -..-.+.|.+++|+.. .+.|++++.+|.+.|||++..+.+-.+..+.. .+..++|+|+.. .+++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99874322211 1123567999999875 45788999999999999998876665554443 477899999764 5666
Q ss_pred eeCCC---eEEEEeCCCCceeeEcccCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEE
Q 021459 167 GSHDG---TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITS 242 (312)
Q Consensus 167 ~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 242 (312)
++.|. .|.+||+|...........|...+..+.|++.+ .+|++++.|++|.+|+..+++.+..+.. ...++..+
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv 302 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDV 302 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeee
Confidence 66554 589999987654444444555566677788766 8999999999999999999998877654 34567777
Q ss_pred EEEccCCcEEEEeecCCeEEEEECCch
Q 021459 243 TFSVTNGKYIVSGSEDNCVYVWDLQQK 269 (312)
Q Consensus 243 ~~~~~~~~~l~~~~~dg~i~iwd~~~~ 269 (312)
.|.+.+...++.++-||.|.||.+...
T Consensus 303 ~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 303 QWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred eecCCCcchhhhheeccceeeeeeecC
Confidence 888888889999999999999998643
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=6.1e-22 Score=152.82 Aligned_cols=243 Identities=22% Similarity=0.439 Sum_probs=178.8
Q ss_pred ccccceEEEEECCC----CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCC-CeEEEEcCCCeEEEEeCC
Q 021459 20 AHSRAVSCVKFSND----GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDS-HYICSASDDRTLRIWDAR 94 (312)
Q Consensus 20 ~h~~~v~~~~~s~~----~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~wd~~ 94 (312)
.|...-..++|+-+ ..++|.||.-|.|+|.|+.+++....+.+|...|+.+.+.|+. ++++++|.|..|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 37777888888754 3478999999999999999999999999999999999999975 799999999999999999
Q ss_pred CCceeeee---eecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE----------------------------
Q 021459 95 TPFDCLKT---LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR---------------------------- 143 (312)
Q Consensus 95 ~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~---------------------------- 143 (312)
+. .++.. +.+|.+.|.++.|++++.++++++.|.++++|++...+...
T Consensus 167 ~~-~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fs 245 (385)
T KOG1034|consen 167 TD-VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFS 245 (385)
T ss_pred CC-eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccc
Confidence 85 45443 46799999999999999999999999999999997432110
Q ss_pred EeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC-CceeeEc---------ccC---CCCcEEE--EEECCCCCEEE
Q 021459 144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE-GACLKTL---------IDD---KDPAVSF--AKFSPNGKFIL 208 (312)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~~~~~---------~~~---~~~~~~~--~~~~~~~~~l~ 208 (312)
+-..|...|.|+.|- |+++++=+-++.|..|...+ ++.+... ... ....+.. .+++|-++.||
T Consensus 246 t~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 246 TTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred ccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence 011234444455553 56889988999999998732 1111111 111 1112222 35778889999
Q ss_pred EEecCCeEEEEEcCCCcEEE--EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459 209 VGTLDSTLKLWNYSAGKFLK--IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266 (312)
Q Consensus 209 ~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 266 (312)
.|...|.|.+||+++.+... ++. |......+.-.....++.+|+...+|+.|--||.
T Consensus 324 ~gnq~g~v~vwdL~~~ep~~~ttl~-~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEPPKCTTLT-HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hccCCCcEEEEECCCCCCccCceEE-eccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 99999999999998876532 222 2222222333334467899999999999999985
No 163
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.1e-21 Score=157.40 Aligned_cols=252 Identities=19% Similarity=0.287 Sum_probs=184.3
Q ss_pred ceeeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459 14 HFKTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRI 90 (312)
Q Consensus 14 ~~~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 90 (312)
.+..+..|..+|+++.|+| +-..+++.+.||+|++-|+++.. .+..+......+.++.|+.+...++++..=|...+
T Consensus 226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~ 305 (498)
T KOG4328|consen 226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNV 305 (498)
T ss_pred ceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEE
Confidence 3456778999999999999 45689999999999999988753 33333323445678889888888888888789999
Q ss_pred EeCCCCceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEE----EEeeecCcCeEEEEEccCCCEEE
Q 021459 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCT----RVIRAHSMPVTSVHFNRDGSLIV 165 (312)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
||.+++......+.-|...|..++++|.. .+++|++.|++.++||++.-... .....|...|.+..|+|.+-.|+
T Consensus 306 iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~ 385 (498)
T KOG4328|consen 306 IDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLL 385 (498)
T ss_pred EEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceE
Confidence 99998766566667788899999999965 47899999999999999754322 23346888999999999887899
Q ss_pred EeeCCCeEEEEeCC----CCceeeEcccCC--CCc--EEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCC-c
Q 021459 166 SGSHDGTCKIWDAG----EGACLKTLIDDK--DPA--VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN-K 236 (312)
Q Consensus 166 ~~~~d~~i~iwd~~----~~~~~~~~~~~~--~~~--~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~ 236 (312)
+.+.|..|++||.. .-....++.... ... ..-+.|.|+..++++|..-..|-|||-..++.+..+..... .
T Consensus 386 TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~t 465 (498)
T KOG4328|consen 386 TTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESST 465 (498)
T ss_pred eeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccc
Confidence 99999999999973 112222222111 111 12256999999999999999999999888876655433322 2
Q ss_pred eeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459 237 KYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266 (312)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 266 (312)
+.++ ..+.+.+..+++.++..|.|++|--
T Consensus 466 I~~v-n~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 466 IPSV-NEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cccc-eeecccccceeccCCccceEEEEec
Confidence 2222 2333333336677778899998854
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=5.5e-22 Score=163.05 Aligned_cols=249 Identities=21% Similarity=0.338 Sum_probs=181.4
Q ss_pred EeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC-------CceeeeeeecccccEEEEEEecCCCEEEEeecCCcE
Q 021459 59 RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART-------PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESI 131 (312)
Q Consensus 59 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 131 (312)
.+..|.+.|+.++|.|....|++++.|+.+++|+++. ..+.+.++++|.++|.|+++.++++.+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 4567888999999999999999999999999999832 234567889999999999999999999999999999
Q ss_pred EEEEcCCC----------eEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc--cCCCCcEEEEE
Q 021459 132 RIWEVKTG----------KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI--DDKDPAVSFAK 199 (312)
Q Consensus 132 ~~wd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~ 199 (312)
+.|++... .....+.+|...++.+++++....|++++.||+++.|+...... ..+. ........ +.
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls-vd 446 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS-VD 446 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcce-Ee
Confidence 99966422 12346778999999999999999999999999999999876554 1111 11122222 21
Q ss_pred ECCCC-CEEEEEecCCeEEEEEcCCCcEEEEEEccCCc----eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeec
Q 021459 200 FSPNG-KFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK----KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQK 274 (312)
Q Consensus 200 ~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 274 (312)
+-... ...++...-+.--+++......+.++...... ...+....+.++..+.+++.+|+.|+++|..++.++..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 21111 11222222222223333333333333322111 11233344557778999999999999999999999999
Q ss_pred ccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 275 LDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 275 ~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
...|-..+.++++.|++.+|++++.| ++|++|..+
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d--~sv~l~kld 561 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHD--GSVRLWKLD 561 (577)
T ss_pred eeeccceecceeecCCCceEEeecCC--ceeehhhcc
Confidence 99999999999999999999999955 689999864
No 165
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=8e-22 Score=162.12 Aligned_cols=258 Identities=22% Similarity=0.346 Sum_probs=189.2
Q ss_pred eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC--------cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeE
Q 021459 17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS--------LALVHRFVGHSEGISDLAWSSDSHYICSASDDRTL 88 (312)
Q Consensus 17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v 88 (312)
++..|.+.|+.+.|.|....|++++.||.+.+|+++. .+++..+.+|.++|.|+++.++++.+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 7889999999999999999999999999999999832 35678899999999999999999999999999999
Q ss_pred EEEeCCC---------CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee---ecCcCeEEEE
Q 021459 89 RIWDART---------PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR---AHSMPVTSVH 156 (312)
Q Consensus 89 ~~wd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~ 156 (312)
+.|++.. +......+.||.+.++.+++++....|++++.||+++.|+...... ..+. .|.. -..+.
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~-Plsvd 446 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY-PLSVD 446 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC-cceEe
Confidence 9996531 1123456779999999999999988999999999999999876654 2222 2222 23444
Q ss_pred EccCC-CEEEEeeCCCeEEEEeCCCCceeeEcccC------CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE
Q 021459 157 FNRDG-SLIVSGSHDGTCKIWDAGEGACLKTLIDD------KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI 229 (312)
Q Consensus 157 ~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 229 (312)
+-... ...++...-+.-.+.+....+....+... ....+..+.+.|.+...+++..|+.|+++|..+++.+..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 43222 12222222222223333333222221110 113455667889999999999999999999999998877
Q ss_pred EEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCc
Q 021459 230 YTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHT 279 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 279 (312)
...|.....++ ...+++.+|++|+.||.+++|.+.....+.....|.
T Consensus 527 ~~a~~~svtsl---ai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 527 MVAHKDSVTSL---AIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eeeccceecce---eecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 76666554333 445889999999999999999997777666655543
No 166
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-20 Score=149.38 Aligned_cols=292 Identities=16% Similarity=0.285 Sum_probs=207.7
Q ss_pred eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc------ceEEEe-eeccCCEEEEEEccCCCeEEEEcCCCeE
Q 021459 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL------ALVHRF-VGHSEGISDLAWSSDSHYICSASDDRTL 88 (312)
Q Consensus 16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~------~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~v 88 (312)
+.+.+|.+-|+++.||.++++|++|+.|..+++|+.... +++... ..|...|.+++|....++|++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 356789999999999999999999999999999987532 333222 2356889999999999999999999999
Q ss_pred EEEeCCCCceeeeeeeccc---ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe-EEE--EeeecCcCeEEEEEccCC-
Q 021459 89 RIWDARTPFDCLKTLRGHS---DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK-CTR--VIRAHSMPVTSVHFNRDG- 161 (312)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~--~~~~~~~~v~~~~~~~~~- 161 (312)
.+-|+++. +.+.. ..|. +.|..+..+|-.+.+++.+.++.|.+||.+..+ ... ...........+.|+|..
T Consensus 130 I~HDiEt~-qsi~V-~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETK-QSIYV-ANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred Eeeecccc-eeeee-ecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 99999875 33322 2333 489999999999999999999999999997654 211 111233456788899954
Q ss_pred CEEEEeeCCCeEEEEeCCCCcee-eEc---ccCC--CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCC
Q 021459 162 SLIVSGSHDGTCKIWDAGEGACL-KTL---IDDK--DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN 235 (312)
Q Consensus 162 ~~l~~~~~d~~i~iwd~~~~~~~-~~~---~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 235 (312)
.++++.+..+-+.+||.+..+.. .+. ..-. ........|+|+|.+|++--.-..-.+||+.+.++.-....|..
T Consensus 208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 57788888899999998764321 110 0000 11112356999999988766555566788877665333333333
Q ss_pred ceeE----EEEEEEccCCcEEEEeecCCeEEEEECCch-----------------------heeecccCCccceEEEEEc
Q 021459 236 KKYC----ITSTFSVTNGKYIVSGSEDNCVYVWDLQQK-----------------------TMIQKLDGHTDSVISVTCH 288 (312)
Q Consensus 236 ~~~~----~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~h~~~v~~l~~~ 288 (312)
..+| +..+.+ -+...+++|+.+=-|++|.+... ..+..++||..-++.|.|+
T Consensus 288 ~GY~N~~T~KS~~F-~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~ 366 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTF-IDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFS 366 (609)
T ss_pred Ccceeeeeeeeeee-ecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeec
Confidence 2232 222222 23456999999999999987321 0123467999999999999
Q ss_pred CCCceEEEeeecCCeeEEEEeecC
Q 021459 289 PTENKIASAGLDGDRTVRVWVQDR 312 (312)
Q Consensus 289 p~~~~l~~~~~dgd~~v~iw~~~~ 312 (312)
|....|++.|.. ..++||...|
T Consensus 367 ~H~~~l~SSGVE--~~~KlWS~~r 388 (609)
T KOG4227|consen 367 QHNNLLVSSGVE--NSFKLWSDHR 388 (609)
T ss_pred CCcceEeccchh--hheecccccc
Confidence 999999888854 6899997643
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=2.7e-21 Score=152.64 Aligned_cols=209 Identities=22% Similarity=0.421 Sum_probs=161.6
Q ss_pred EeeeccCCEEEEEEcc-CCCeEEEEcCCCeEEEEeCCCC------ceeeeeeecccccEEEEEEecC-CCEEEEeecCCc
Q 021459 59 RFVGHSEGISDLAWSS-DSHYICSASDDRTLRIWDARTP------FDCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSFDES 130 (312)
Q Consensus 59 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~~------~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~ 130 (312)
...+|+.+|..++|+| +.+.||+||.|.+|.+|++... .+.+..+.+|...|--+.|+|- .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3468999999999999 4678999999999999987532 2456788999999999999995 478999999999
Q ss_pred EEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE
Q 021459 131 IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG 210 (312)
Q Consensus 131 i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
|.+|++.+++.+..+. |..-|+++.|+.||.++++.+.|..|++||.++++.+..-..+.+....-+.|-.+|..+.+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999887777 999999999999999999999999999999999998877654444444445577788855555
Q ss_pred ---ecCCeEEEEEcCCCcE-EEEEEccCCceeEEEEEEEccCCcEE-EEeecCCeEEEEECCchh
Q 021459 211 ---TLDSTLKLWNYSAGKF-LKIYTGHTNKKYCITSTFSVTNGKYI-VSGSEDNCVYVWDLQQKT 270 (312)
Q Consensus 211 ---~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~ 270 (312)
..+.++-+||..+-+. +....-. ....+..-|..++..++ ++|-.|+.|+-|.+.+..
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred cccccccceeccCcccccCcceeEEec--cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 2467899998765432 2111111 11224444555555554 567789999999987654
No 168
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6.6e-21 Score=157.88 Aligned_cols=243 Identities=23% Similarity=0.367 Sum_probs=179.5
Q ss_pred EEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCE-EEEeecCCcEEEEEc
Q 021459 58 HRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL-IVSGSFDESIRIWEV 136 (312)
Q Consensus 58 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~~wd~ 136 (312)
..+.+|++.|.+|...|.|.+|++|+.||+|++|.+.++ .++++.. -.+.|.|++|+|.+.. +++...+..+.+-+.
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg-Rcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG-RCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc-eEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 456899999999999999999999999999999999986 6666654 3468999999997652 222222222333321
Q ss_pred ---------------------------------CCC----eEEEEeeecCcCeEEEEEccCCCEEEEeeCC---CeEEEE
Q 021459 137 ---------------------------------KTG----KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD---GTCKIW 176 (312)
Q Consensus 137 ---------------------------------~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iw 176 (312)
... .-+...-.|..+|..+.|+..|.+|++...+ ..|.|.
T Consensus 472 ~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliH 551 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIH 551 (733)
T ss_pred cccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEE
Confidence 100 0012233467789999999999999987664 467888
Q ss_pred eCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEee
Q 021459 177 DAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS 256 (312)
Q Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 256 (312)
++........+ ......+..+.|+|...+|++++. ..|++||+..++.++.+..... .+......++|+.|+.|+
T Consensus 552 QLSK~~sQ~PF-~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k---wiS~msihp~GDnli~gs 626 (733)
T KOG0650|consen 552 QLSKRKSQSPF-RKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK---WISSMSIHPNGDNLILGS 626 (733)
T ss_pred ecccccccCch-hhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe---eeeeeeecCCCCeEEEec
Confidence 88765544333 233456778889999999998875 5799999988766554432222 244444557899999999
Q ss_pred cCCeEEEEECCch-heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 257 EDNCVYVWDLQQK-TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 257 ~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
.|+.+..+|+.-. +..+++.-|...+.+|+||+.-+.+++++.|| ++.|+.
T Consensus 627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDg--tv~Vfh 678 (733)
T KOG0650|consen 627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDG--TVIVFH 678 (733)
T ss_pred CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCC--cEEEEe
Confidence 9999999999643 56788899999999999999999999999765 566554
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.4e-19 Score=134.47 Aligned_cols=273 Identities=19% Similarity=0.268 Sum_probs=188.4
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEeCCC---------c-ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459 23 RAVSCVKFSNDGTLLASASLDKTVIIWSASS---------L-ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92 (312)
Q Consensus 23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~---------~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd 92 (312)
..|.+-+++|.+++|+.|..+|.|-+..+.. + ..+-..++|..+|+.++|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3466678999999999999999999997653 1 2233457899999999998 45777775 59999886
Q ss_pred CCCCceee--e-----eeecc-----cccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccC
Q 021459 93 ARTPFDCL--K-----TLRGH-----SDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRD 160 (312)
Q Consensus 93 ~~~~~~~~--~-----~~~~~-----~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (312)
.+...+.. + ...-| -..|.++...|..+-++.++.|+.++-||+++|+..+.+++|...+.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 54321100 0 00111 135788888998888888889999999999999999999999999999988555
Q ss_pred CCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcE-------EEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc
Q 021459 161 GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAV-------SFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH 233 (312)
Q Consensus 161 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 233 (312)
...+++|++||++++||.++++....+.....+.. ...+..-+..++++|+. ..+.+|+++..+...++.-.
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfpip 246 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFPIP 246 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEecc
Confidence 56799999999999999999988776643322211 11334556678887754 46899999988877766533
Q ss_pred CCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCc-eEEEeeecCCeeEEEE
Q 021459 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN-KIASAGLDGDRTVRVW 308 (312)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~~~~~dgd~~v~iw 308 (312)
... ..+ .| ..+.++++++.+.|.-|.++. .+-..++.......+..|+-... .+..+|.. +.+.|+
T Consensus 247 a~v-~~v--~F---~~d~vl~~G~g~~v~~~~l~G-vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s--~~~~i~ 313 (325)
T KOG0649|consen 247 ARV-HLV--DF---VDDCVLIGGEGNHVQSYTLNG-VLQANIPVESTACYSASWQTSPIKFISIAGFS--NKLHIL 313 (325)
T ss_pred cce-eEe--ee---ecceEEEeccccceeeeeecc-EEEEeccCCccceeeecccCCceEEEEecccc--eeeeee
Confidence 221 112 22 245778888888999998753 33333443344455566654433 44455543 345443
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.88 E-value=1.5e-20 Score=148.49 Aligned_cols=208 Identities=22% Similarity=0.398 Sum_probs=161.7
Q ss_pred eeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCc-------ceEEEeeeccCCEEEEEEccC-CCeEEEEcCCC
Q 021459 16 KTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSL-------ALVHRFVGHSEGISDLAWSSD-SHYICSASDDR 86 (312)
Q Consensus 16 ~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~ 86 (312)
-.+.+|+++|..++|+| +.+.||+|+.|.+|.||.+... +.+..+.+|...|-.++|+|. .+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 35789999999999999 5567999999999999987643 346678899999999999996 57899999999
Q ss_pred eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcC-eEEEEEccCCCEEE
Q 021459 87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMP-VTSVHFNRDGSLIV 165 (312)
Q Consensus 87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~ 165 (312)
.|.+||+.++.. +.++. |.+.|.+++|+.||.++++.+.|..|++||.++++.+..-.+|.+. -.-+.|-.++..+.
T Consensus 155 ~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 155 TVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred eEEEEeccCCce-eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 999999999754 44455 9999999999999999999999999999999999988777677542 33455777888555
Q ss_pred Eee---CCCeEEEEeCCCCceeeEc-ccCCCCcEEEEEECCCCCEEE-EEecCCeEEEEEcCCCc
Q 021459 166 SGS---HDGTCKIWDAGEGACLKTL-IDDKDPAVSFAKFSPNGKFIL-VGTLDSTLKLWNYSAGK 225 (312)
Q Consensus 166 ~~~---~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~ 225 (312)
+|- .+.++.+||..+-.....+ ..+....+-.-.++++.+.+. +|-.|+.||.|.+.+..
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 543 4678999997653221111 112233344556888887664 45679999999987655
No 171
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.88 E-value=7.3e-21 Score=158.89 Aligned_cols=124 Identities=25% Similarity=0.340 Sum_probs=100.0
Q ss_pred ceeeecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcce--E---EEeeec-cCCEEEEEEccCCCeEEEEcCCC
Q 021459 14 HFKTLTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLAL--V---HRFVGH-SEGISDLAWSSDSHYICSASDDR 86 (312)
Q Consensus 14 ~~~~~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~--~---~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~ 86 (312)
.+..+.+|.+.|+.+.|+| +..+|||++.|..++||.+..+-. + ....+| .-.|.++.|+|...-|+..+.-|
T Consensus 71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g 150 (1012)
T KOG1445|consen 71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG 150 (1012)
T ss_pred ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence 4456788999999999999 566899999999999999874321 1 112334 34578999999765555555789
Q ss_pred eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC
Q 021459 87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT 138 (312)
Q Consensus 87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 138 (312)
.+++||+.+. +.+..+.+|.+.|.++.|+.||.+++++..|..|++||.+.
T Consensus 151 ~v~i~D~stq-k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 151 SVYITDISTQ-KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred eEEEEEcccC-ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 9999999885 45677889999999999999999999999999999999764
No 172
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=4.3e-20 Score=162.18 Aligned_cols=288 Identities=20% Similarity=0.319 Sum_probs=195.9
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeec---cCCEEEEEEcc--CCCeEEEEcCCCeEEEEeC
Q 021459 19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGH---SEGISDLAWSS--DSHYICSASDDRTLRIWDA 93 (312)
Q Consensus 19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~d~~v~~wd~ 93 (312)
.+...+-..+.|+|-...++++.....|+|||.+.++.+..+..+ ...|+.+++-. |..++++|+.||.|+||+-
T Consensus 1061 ~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred hcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 344445667899999999999987889999999999888777654 35688888875 4568999999999999974
Q ss_pred CCC----ceeeeeee-------cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec-CcCeEEEEEcc-C
Q 021459 94 RTP----FDCLKTLR-------GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH-SMPVTSVHFNR-D 160 (312)
Q Consensus 94 ~~~----~~~~~~~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~~-~ 160 (312)
... .+.+.... +..+.-.-+.|..+..+|+++|.-..|++||....+....+... ...++++.-+- .
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 321 22222221 11222244667777777777777889999999988777665432 33456554432 4
Q ss_pred CCEEEEeeCCCeEEEEeCCCCce--eeEcccCCCC--cEEEEEECCCCC-EEEEEecCCeEEEEEcCCCcEEEEE--Ecc
Q 021459 161 GSLIVSGSHDGTCKIWDAGEGAC--LKTLIDDKDP--AVSFAKFSPNGK-FILVGTLDSTLKLWNYSAGKFLKIY--TGH 233 (312)
Q Consensus 161 ~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~--~~~ 233 (312)
|+.+++|..||.+++||.+.... .......+.. .+-.+.+.++|- .|++|+.+|.|++||++.......+ ..|
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 68999999999999999875432 1111122222 255566777664 4999999999999999875322221 111
Q ss_pred CCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc------C-CccceEEEEEcCCCceEEEeeecCCeeEE
Q 021459 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD------G-HTDSVISVTCHPTENKIASAGLDGDRTVR 306 (312)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~-h~~~v~~l~~~p~~~~l~~~~~dgd~~v~ 306 (312)
-.-...++.....+....+|+|+. +.|+||++....+ ..++ + -.+.+.|++|||..-.+|+|+. |.+|-
T Consensus 1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~--Ds~V~ 1376 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA--DSTVS 1376 (1387)
T ss_pred cccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchhHhhhhccC--CceEE
Confidence 111112445555677889999998 9999999864322 2221 1 2346899999999888888864 46888
Q ss_pred EEee
Q 021459 307 VWVQ 310 (312)
Q Consensus 307 iw~~ 310 (312)
||-.
T Consensus 1377 iYs~ 1380 (1387)
T KOG1517|consen 1377 IYSC 1380 (1387)
T ss_pred Eeec
Confidence 7753
No 173
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=2.5e-18 Score=143.52 Aligned_cols=269 Identities=10% Similarity=0.198 Sum_probs=171.7
Q ss_pred EEEeCCCeEEEEeCCC-cc--eEEEeeeccCCEEEEEEccCCCeEEEEc-CCCeEEEEeCCCCce--eeeeeecccccEE
Q 021459 38 ASASLDKTVIIWSASS-LA--LVHRFVGHSEGISDLAWSSDSHYICSAS-DDRTLRIWDARTPFD--CLKTLRGHSDFVF 111 (312)
Q Consensus 38 ~t~~~d~~i~vw~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~wd~~~~~~--~~~~~~~~~~~v~ 111 (312)
++...++.|++|++.+ ++ .+..+. +......++++|++++|++++ .++.|.+|++..... ...... ..+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCce
Confidence 3446789999999963 33 334333 345677899999999887664 578899999863211 122221 223456
Q ss_pred EEEEecCCCEEEEeec-CCcEEEEEcCC-Ce---EEEEeeecCcCeEEEEEccCCCEEEEe-eCCCeEEEEeCCCCceee
Q 021459 112 CVNFNPQSNLIVSGSF-DESIRIWEVKT-GK---CTRVIRAHSMPVTSVHFNRDGSLIVSG-SHDGTCKIWDAGEGACLK 185 (312)
Q Consensus 112 ~~~~~~~~~~l~s~~~-dg~i~~wd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~ 185 (312)
.+.++|+++.+++++. ++.|.+|++.+ +. ....+. +......++++|++++++++ ..++.|.+||+.+...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 7999999998887765 78899999964 22 122222 22345678899999888654 456899999997633221
Q ss_pred E-----cccCCCCcEEEEEECCCCCEEEEEec-CCeEEEEEcCC--CcE--EEEEEccC----CceeEEEEEEEccCCcE
Q 021459 186 T-----LIDDKDPAVSFAKFSPNGKFILVGTL-DSTLKLWNYSA--GKF--LKIYTGHT----NKKYCITSTFSVTNGKY 251 (312)
Q Consensus 186 ~-----~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~v~d~~~--~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~ 251 (312)
. ...........+.++|+|++++++.. ++.|.+||+.. ++. +..+...+ ...+..... ..+++++
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~-~~pdg~~ 241 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH-ITPDGRH 241 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE-ECCCCCE
Confidence 1 01111223455789999999988866 89999999974 332 22222111 111222222 3478888
Q ss_pred EEEee-cCCeEEEEECCchheeecccCC---ccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 252 IVSGS-EDNCVYVWDLQQKTMIQKLDGH---TDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 252 l~~~~-~dg~i~iwd~~~~~~~~~~~~h---~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
++++. .++.|.+|++.......++.++ ......++++|++++|+++.. ++++|.+|.++
T Consensus 242 lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~-~~~~v~v~~~~ 304 (330)
T PRK11028 242 LYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ-KSHHISVYEID 304 (330)
T ss_pred EEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc-cCCcEEEEEEc
Confidence 88775 4789999998654322222222 124568899999999998764 46799999864
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.86 E-value=1.2e-21 Score=168.00 Aligned_cols=271 Identities=26% Similarity=0.444 Sum_probs=208.1
Q ss_pred eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd 92 (312)
+..+.|.+|...|.|..|...|.++++|+.|..++||...+..++....||...|+.++.+.+..++++++.|..|++|-
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE---ee-ecCcCeEEEEEccCCCEEEEee
Q 021459 93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV---IR-AHSMPVTSVHFNRDGSLIVSGS 168 (312)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~---~~-~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
+.++ ..+..+.+|.+.|.+++|+|-. +.+.||++++||.+-...+.. .. .....+-++-|..++.-+++++
T Consensus 261 l~~~-~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 261 LPDG-APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred cCCC-chHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 9875 5577789999999999999954 778899999999872211111 11 1123456677778888899999
Q ss_pred CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCC-CCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEcc
Q 021459 169 HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN-GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVT 247 (312)
Q Consensus 169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
.|+.-..|....-. .+.....++..+.+ ..+.+++-.+-.+++|++.++.......+|....+.+.. .+-
T Consensus 336 ~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~--Hpf 406 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDV--HPF 406 (1113)
T ss_pred CCcccccchhhHhh-------hhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeee--cCC
Confidence 99988887653211 11111112222212 246666777888999999999988888889887776654 344
Q ss_pred CCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEe
Q 021459 248 NGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASA 297 (312)
Q Consensus 248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~ 297 (312)
+.+...+++.||...|||+-.+..++........+..-+|+++|..++..
T Consensus 407 n~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred CcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecC
Confidence 66778899999999999998877665543223455666889888776653
No 175
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=8.7e-19 Score=134.43 Aligned_cols=205 Identities=24% Similarity=0.432 Sum_probs=150.8
Q ss_pred ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC----eEEEEeeecCcCeEEEEEcc--CCCEEEEeeCCCeEEEEe
Q 021459 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG----KCTRVIRAHSMPVTSVHFNR--DGSLIVSGSHDGTCKIWD 177 (312)
Q Consensus 104 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd 177 (312)
.+|.+.|.++.|++.|+.+++|+.|++|+|||.+.. .+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 468899999999999999999999999999997543 35567789999999999976 588999999999999997
Q ss_pred CCCC-------c-eeeEcccCCCCcEEEEEECCC--CCEEEEEecCCeEEEEEcCCCcEEEEEE-------------ccC
Q 021459 178 AGEG-------A-CLKTLIDDKDPAVSFAKFSPN--GKFILVGTLDSTLKLWNYSAGKFLKIYT-------------GHT 234 (312)
Q Consensus 178 ~~~~-------~-~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------------~~~ 234 (312)
-... + .....+.+....+..+.|.|. |-.|++++.||.+|||+..+...+..++ .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 5211 1 122233445567888889885 5688999999999999876544333221 112
Q ss_pred CceeEEEEEEEccCCcEEEEeecC-----CeEEEEECCch----heeecccCCccceEEEEEcCCC----ceEEEeeecC
Q 021459 235 NKKYCITSTFSVTNGKYIVSGSED-----NCVYVWDLQQK----TMIQKLDGHTDSVISVTCHPTE----NKIASAGLDG 301 (312)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~p~~----~~l~~~~~dg 301 (312)
....|+.-...-....+||.|+.+ +.+.||..... ..+.++.+|.++|..|+|.|.- ..||+++-|
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD- 248 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD- 248 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC-
Confidence 223344433222235678888776 57899977543 3466788999999999999973 468888854
Q ss_pred CeeEEEEeec
Q 021459 302 DRTVRVWVQD 311 (312)
Q Consensus 302 d~~v~iw~~~ 311 (312)
+ |+||++.
T Consensus 249 -g-v~I~~v~ 256 (361)
T KOG2445|consen 249 -G-VRIFKVK 256 (361)
T ss_pred -c-EEEEEEe
Confidence 4 9999873
No 176
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.1e-18 Score=148.03 Aligned_cols=287 Identities=19% Similarity=0.299 Sum_probs=199.0
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC----cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459 19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS----LALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR 94 (312)
Q Consensus 19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~ 94 (312)
..|...+++.++||.++++|+|..||.|.+|.--. ......+.-|...|.+++|+++|.+|++|+.++.+-+|.+.
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35777899999999999999999999999995322 12234566788999999999999999999999999999998
Q ss_pred CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee-----------cCcCeEEEEEccCCCE
Q 021459 95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA-----------HSMPVTSVHFNRDGSL 163 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~ 163 (312)
++. .+.+..-.++|..+.++||++..+..-.|..|.+-...+.....++.+ ..+-.+.+.++|..+.
T Consensus 282 T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 282 TGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred CCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 864 344555678899999999999998888999998886644332222211 1233567888997777
Q ss_pred EEEeeCCCeEEEEeCCCCceeeEccc----CCC-C-----cEEEEEECCCCCEEEEEe--------cC--CeEEEEEcCC
Q 021459 164 IVSGSHDGTCKIWDAGEGACLKTLID----DKD-P-----AVSFAKFSPNGKFILVGT--------LD--STLKLWNYSA 223 (312)
Q Consensus 164 l~~~~~d~~i~iwd~~~~~~~~~~~~----~~~-~-----~~~~~~~~~~~~~l~~~~--------~d--~~i~v~d~~~ 223 (312)
++-.+..|.|++||+.+...+..+.. ... . .+..+..+-.|.++++.- .| -.+++|....
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 88888999999999987665543321 111 1 133344556688888753 22 3578897755
Q ss_pred CcEEE-----EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheee----------cccCCccceEEEEEc
Q 021459 224 GKFLK-----IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ----------KLDGHTDSVISVTCH 288 (312)
Q Consensus 224 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----------~~~~h~~~v~~l~~~ 288 (312)
...-. +...|... ...++...+.....+++++.||.+++|-+...+.+. .-.-|..++..++|+
T Consensus 440 ~~kt~~L~T~I~~PH~~~-~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNA-FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CcceeEEEEEEecCCCce-eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 43221 22233322 222222333334489999999999999874332211 111267789999999
Q ss_pred CCCceEEEeeecCCeeEEEEeec
Q 021459 289 PTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 289 p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
.||..| ++|.| .+|-+|+++
T Consensus 519 ~dGsll-a~s~~--~~Itiwd~~ 538 (792)
T KOG1963|consen 519 QDGSLL-AVSFD--DTITIWDYD 538 (792)
T ss_pred CCCcEE-EEecC--CEEEEecCC
Confidence 999555 45555 489999975
No 177
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.85 E-value=6.3e-20 Score=137.82 Aligned_cols=285 Identities=18% Similarity=0.220 Sum_probs=183.1
Q ss_pred eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee-eccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDDRTLRIWDA 93 (312)
Q Consensus 15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~ 93 (312)
+..|++|...|+++.|..+++ |.+|..-|.+.+|.+++...+..++ .+...|+.+.--|+ ..|.+-+.|+.+.+|++
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTI 84 (323)
T ss_pred eeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEc
Confidence 345679999999999987766 7889999999999999887776676 46778888888887 45677789999999998
Q ss_pred CCCceeeeeeecccccEEEEEE-----ecCCC----EEEEeecCC-cEEEEEcCCCeEEEEe----eecCcCeEEEEEcc
Q 021459 94 RTPFDCLKTLRGHSDFVFCVNF-----NPQSN----LIVSGSFDE-SIRIWEVKTGKCTRVI----RAHSMPVTSVHFNR 159 (312)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~-----~~~~~----~l~s~~~dg-~i~~wd~~~~~~~~~~----~~~~~~v~~~~~~~ 159 (312)
....- + ..|.-.+.++-| +++++ .++.-+... .+.+-|......+... ....+.+.+..+..
T Consensus 85 a~s~~-i---~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~ 160 (323)
T KOG0322|consen 85 AYSAF-I---SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH 160 (323)
T ss_pred cCcce-E---EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence 65311 1 112222222222 22221 112111111 0111221111111111 11223455655432
Q ss_pred -CCC--EEEEeeCCCeEEEEeCCCCceeeEcc---------cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC--c
Q 021459 160 -DGS--LIVSGSHDGTCKIWDAGEGACLKTLI---------DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG--K 225 (312)
Q Consensus 160 -~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~--~ 225 (312)
++. ++++|.++|.+.+||+.++..+..+. ..+...+..+.+.+.-..=+.|+.+..+.+|.+... .
T Consensus 161 ~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs 240 (323)
T KOG0322|consen 161 ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS 240 (323)
T ss_pred cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc
Confidence 233 56788899999999998874433221 123344555556654444466777777888877543 2
Q ss_pred E-EEE-EE-ccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCC
Q 021459 226 F-LKI-YT-GHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302 (312)
Q Consensus 226 ~-~~~-~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd 302 (312)
. ++. .. .+. ....+. ..++++.+||++-||+|++|..++...+..++-|.+.|++|+|+|+.+.+|++| .|
T Consensus 241 lq~~~e~~lknp-Gv~gvr---IRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaas--kD 314 (323)
T KOG0322|consen 241 LQIRKEITLKNP-GVSGVR---IRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS--KD 314 (323)
T ss_pred ccccceEEecCC-CccceE---EccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhcc--CC
Confidence 1 111 11 111 112222 237899999999999999999999999999999999999999999999999999 45
Q ss_pred eeEEEEeec
Q 021459 303 RTVRVWVQD 311 (312)
Q Consensus 303 ~~v~iw~~~ 311 (312)
.+|.+|+..
T Consensus 315 ~rISLWkLY 323 (323)
T KOG0322|consen 315 ARISLWKLY 323 (323)
T ss_pred ceEEeeecC
Confidence 699999863
No 178
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=1.7e-19 Score=139.28 Aligned_cols=222 Identities=19% Similarity=0.380 Sum_probs=163.4
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCcceEEEeee--ccC---CEEEEEEccCCCeEEEEcCCCeEEEEeCC-CCceee-----
Q 021459 32 NDGTLLASASLDKTVIIWSASSLALVHRFVG--HSE---GISDLAWSSDSHYICSASDDRTLRIWDAR-TPFDCL----- 100 (312)
Q Consensus 32 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~d~~v~~wd~~-~~~~~~----- 100 (312)
|+.+++|+.+.+.-|.+||.-++++...+.+ |.+ +..+++|+|||..|++| ..+.|+++|+. .+..+.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~ 199 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTV 199 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhh
Confidence 6788999999999999999999988766654 333 34689999999999876 67899999983 332211
Q ss_pred -eeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-CCeEEEEe
Q 021459 101 -KTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DGTCKIWD 177 (312)
Q Consensus 101 -~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd 177 (312)
+...+..+.+.|++|+|.. +.++.++....+-+|.-..+..+..+.+|...|+.+.|.++|+.|++|.. +..|..||
T Consensus 200 ~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WD 279 (406)
T KOG2919|consen 200 TKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWD 279 (406)
T ss_pred hcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEe
Confidence 1123446788999999954 58999999999999988888888888899999999999999999999885 66899999
Q ss_pred CCCCce-eeEcccC---CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC-CcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459 178 AGEGAC-LKTLIDD---KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA-GKFLKIYTGHTNKKYCITSTFSVTNGKYI 252 (312)
Q Consensus 178 ~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
+|.... +..+..+ ....|. ....|.+++|++|+.||.|++||++. +..+..+..+....+.+ ...|--.++
T Consensus 280 iR~~~~pv~~L~rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgv---slnP~mpil 355 (406)
T KOG2919|consen 280 IRYSRDPVYALERHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGV---SLNPIMPIL 355 (406)
T ss_pred ehhccchhhhhhhhccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccce---ecCccccee
Confidence 987432 2222221 222232 34789999999999999999999987 55455554444332222 222334566
Q ss_pred EEeecC
Q 021459 253 VSGSED 258 (312)
Q Consensus 253 ~~~~~d 258 (312)
++++..
T Consensus 356 atssGq 361 (406)
T KOG2919|consen 356 ATSSGQ 361 (406)
T ss_pred eeccCc
Confidence 766554
No 179
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=7.1e-18 Score=145.81 Aligned_cols=291 Identities=20% Similarity=0.307 Sum_probs=215.3
Q ss_pred ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCC---CeEEEEcCCCeEEEEeCC
Q 021459 18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDS---HYICSASDDRTLRIWDAR 94 (312)
Q Consensus 18 ~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~v~~wd~~ 94 (312)
+.+-...-..-.||+|++.++.... ..|.||...++.++..+..|..++.++.+.|.. .++.+++.||.|++||-.
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 3444444445689999998877655 589999999999999999999999999998854 477899999999999864
Q ss_pred CCce----------------------------------------------------------------------ee----
Q 021459 95 TPFD----------------------------------------------------------------------CL---- 100 (312)
Q Consensus 95 ~~~~----------------------------------------------------------------------~~---- 100 (312)
.+.. ++
T Consensus 91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~ 170 (792)
T KOG1963|consen 91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN 170 (792)
T ss_pred CcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence 2100 00
Q ss_pred ----------------------e------eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC--C--eEEEEeeec
Q 021459 101 ----------------------K------TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT--G--KCTRVIRAH 148 (312)
Q Consensus 101 ----------------------~------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~--~--~~~~~~~~~ 148 (312)
+ .-..|.-.+.|.+++|.+++++++..||.|.+|.--. + .....+..|
T Consensus 171 ~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 171 SGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH 250 (792)
T ss_pred CceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence 0 0001223356789999999999999999999995322 2 234567789
Q ss_pred CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459 149 SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK 228 (312)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 228 (312)
...|.+++|+++|.+|++|+..+.+.+|.+.+++ ++++..-...+..+.++||+.+.+....|+.|.+....+.+...
T Consensus 251 ~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS 328 (792)
T ss_pred ccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh
Confidence 9999999999999999999999999999999887 56677777888999999999999999999999998765544333
Q ss_pred EEEccCCc-------eeE-EEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc-----------CCccceEEEEEcC
Q 021459 229 IYTGHTNK-------KYC-ITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD-----------GHTDSVISVTCHP 289 (312)
Q Consensus 229 ~~~~~~~~-------~~~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~h~~~v~~l~~~p 289 (312)
.+++-... ..+ .......|..+.++..+..|.|.+||+.+.+.+.+++ -+.-.+.+++.+.
T Consensus 329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~ 408 (792)
T KOG1963|consen 329 TISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR 408 (792)
T ss_pred hccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc
Confidence 33322111 111 1112222445677888899999999998776655542 1233578888888
Q ss_pred CCceEEEee--------ecCCeeEEEEeec
Q 021459 290 TENKIASAG--------LDGDRTVRVWVQD 311 (312)
Q Consensus 290 ~~~~l~~~~--------~dgd~~v~iw~~~ 311 (312)
.|++++|.- .||...+|+|..+
T Consensus 409 ~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 409 FGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred cceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 899998864 3678899999874
No 180
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=2.1e-18 Score=131.30 Aligned_cols=260 Identities=22% Similarity=0.374 Sum_probs=182.6
Q ss_pred CCeEEEEeCC--CcceE-EEeeeccCCEEEEEEccC-CCeEEEEcCC-------CeEEEEeCCCCce--------eeeee
Q 021459 43 DKTVIIWSAS--SLALV-HRFVGHSEGISDLAWSSD-SHYICSASDD-------RTLRIWDARTPFD--------CLKTL 103 (312)
Q Consensus 43 d~~i~vw~~~--~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~d-------~~v~~wd~~~~~~--------~~~~~ 103 (312)
|+.|.+..+. ...+. ..+..|.+.|..++-+|. .+.|+++-.+ -..-+|.+..+.. ++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 4455554433 33332 335567789999999995 4566666432 1357898765332 22223
Q ss_pred e-cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeE-EEEee-----ecCcCeEEEEEcc--CCCEEEEeeCCCeEE
Q 021459 104 R-GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKC-TRVIR-----AHSMPVTSVHFNR--DGSLIVSGSHDGTCK 174 (312)
Q Consensus 104 ~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d~~i~ 174 (312)
. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. ...+. .+....++-+|+| +++.+++. .|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEE
Confidence 2 3456899999999999999876 77899999987655 22221 2344567788998 77777664 578999
Q ss_pred EEeCCCCceeeEcccCCCCcEEEEEECCCCC-EEEEEecCCeEEEEEcCCCc-EEEEEEccCCceeEEEEEEEccCCcEE
Q 021459 175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGK-FILVGTLDSTLKLWNYSAGK-FLKIYTGHTNKKYCITSTFSVTNGKYI 252 (312)
Q Consensus 175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
.||+|+......+...+...+..+.|.|+.+ +|++++.||.|++||.+..+ .+..+.+|..-.+++ .+.+.-..++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~V--Rfn~~hdqLi 274 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAV--RFNPEHDQLI 274 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEE--EecCccceEE
Confidence 9999998877777777777788889999876 67788999999999998754 466677776655555 4455556789
Q ss_pred EEeecCCeEEEEECCch-----------------------------heeecccCCccceEEEEEcCCCce-EEEeeecCC
Q 021459 253 VSGSEDNCVYVWDLQQK-----------------------------TMIQKLDGHTDSVISVTCHPTENK-IASAGLDGD 302 (312)
Q Consensus 253 ~~~~~dg~i~iwd~~~~-----------------------------~~~~~~~~h~~~v~~l~~~p~~~~-l~~~~~dgd 302 (312)
++|+.|..|.+|....- ..+.++..|++.|.+++|+.-.++ +|+-|+||
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG- 353 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG- 353 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc-
Confidence 99999999999954210 123356679999999999877665 56668886
Q ss_pred eeEEEE
Q 021459 303 RTVRVW 308 (312)
Q Consensus 303 ~~v~iw 308 (312)
+|.|=
T Consensus 354 -RviIs 358 (370)
T KOG1007|consen 354 -RVIIS 358 (370)
T ss_pred -eEEee
Confidence 45543
No 181
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=1e-19 Score=152.13 Aligned_cols=238 Identities=16% Similarity=0.317 Sum_probs=167.2
Q ss_pred ECCCCCEEEE--EeCCCeEEEEeCCCc-ce----EEEeeeccCCEEEEEEcc-CCCeEEEEcCCCeEEEEeCCCC-----
Q 021459 30 FSNDGTLLAS--ASLDKTVIIWSASSL-AL----VHRFVGHSEGISDLAWSS-DSHYICSASDDRTLRIWDARTP----- 96 (312)
Q Consensus 30 ~s~~~~~l~t--~~~d~~i~vw~~~~~-~~----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~~----- 96 (312)
|+.+..++|. ++..|.|-||++..- ++ +..+. ....|+++.|.| |.+.|+++++||.|++|.+...
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 4444455554 466789999998753 22 11121 345689999999 6789999999999999987542
Q ss_pred -ceeeeeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459 97 -FDCLKTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK 174 (312)
Q Consensus 97 -~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
...-+.+.+|...|.++.|+| ..+.|+++++|.+|++||+.+++....+.+|...|..++|+|+|+.+++.+.||+++
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 123456778999999999999 456899999999999999999998889999999999999999999999999999999
Q ss_pred EEeCCCCcee-eEcccCCCCcEEEEEECCCCCEEEEEecC----CeEEEEEcCCCc--EEEEEEccCCceeEEEEEEEcc
Q 021459 175 IWDAGEGACL-KTLIDDKDPAVSFAKFSPNGKFILVGTLD----STLKLWNYSAGK--FLKIYTGHTNKKYCITSTFSVT 247 (312)
Q Consensus 175 iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
+|+.+++... .+-.+..+..-..+.|.-+|+++++.+.| .+|.+||.+.-. .+.+..-.... ..+.-.+...
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-s~LvP~YD~D 824 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-SPLVPHYDYD 824 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC-ccccccccCC
Confidence 9999876432 22111111222234466689998887766 467888865433 22221111111 1111112223
Q ss_pred CCcEEEEeecCCeEEEEECCch
Q 021459 248 NGKYIVSGSEDNCVYVWDLQQK 269 (312)
Q Consensus 248 ~~~~l~~~~~dg~i~iwd~~~~ 269 (312)
.+-++++|-.|..|.+|.+-..
T Consensus 825 s~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 825 SNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred CceEEEecCCCceEEEEEecCC
Confidence 4567899999999999988543
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=5.8e-19 Score=148.47 Aligned_cols=242 Identities=21% Similarity=0.424 Sum_probs=174.5
Q ss_pred eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd 92 (312)
..++++.+|++.|.|++|+.||+++|+|+.|+.+.+|+..-...+ ++ .|.+.|.++.|+|-.+.|++|+-+ ..-+|.
T Consensus 44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS 120 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWS 120 (1081)
T ss_pred ccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-ccCCeeeEeecCchHHHhhhcchh-hccccC
Confidence 456789999999999999999999999999999999986533222 22 499999999999999999998754 356787
Q ss_pred CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee--ecCcCeEEEEEccCC-----CEEE
Q 021459 93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--AHSMPVTSVHFNRDG-----SLIV 165 (312)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~-----~~l~ 165 (312)
.... .+... .....+.+++|..||.+++-|-.+|+|.+-+-...+....-+ +...+|++++|+|.. ..++
T Consensus 121 ~~qK--~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a 197 (1081)
T KOG1538|consen 121 PEQK--SVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA 197 (1081)
T ss_pred hhhh--hHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence 6432 12111 134568899999999999999999999998644333333322 356789999999953 3667
Q ss_pred EeeCCCeEEEEeCCCCceee-EcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEE
Q 021459 166 SGSHDGTCKIWDAGEGACLK-TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTF 244 (312)
Q Consensus 166 ~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
+.....++.++.+.. +.+. ...-..+ ..++.+-++|.+++.|+.|+.+++|. +.|-.+.+... ...+ +-...
T Consensus 198 V~DW~qTLSFy~LsG-~~Igk~r~L~Fd--P~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~--~D~W-IWtV~ 270 (1081)
T KOG1538|consen 198 VADWGQTLSFYQLSG-KQIGKDRALNFD--PCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGE--QDSW-IWTVQ 270 (1081)
T ss_pred EEeccceeEEEEecc-eeecccccCCCC--chhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccc--ccee-EEEEE
Confidence 777777777776543 3222 1111222 24456789999999999999999996 44544444332 1222 33334
Q ss_pred EccCCcEEEEeecCCeEEEEECC
Q 021459 245 SVTNGKYIVSGSEDNCVYVWDLQ 267 (312)
Q Consensus 245 ~~~~~~~l~~~~~dg~i~iwd~~ 267 (312)
..|++..++.|..||+|..|++-
T Consensus 271 ~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 271 AKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EccCCceEEEEEccCeeehhhhH
Confidence 45889999999999999999873
No 183
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=6.1e-19 Score=144.75 Aligned_cols=187 Identities=26% Similarity=0.349 Sum_probs=146.0
Q ss_pred eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR 94 (312)
Q Consensus 15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~ 94 (312)
.+...+|.+.|.+-+|+|||.-|+|+|.||.|++|+-. +.+...+-....+|+|++|.|+.+.++-|. .+.+.+=-+.
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~ 174 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLA 174 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecc
Confidence 34567899999999999999999999999999999744 444444455678899999999877665553 3455554443
Q ss_pred CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459 95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK 174 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
.. ..+...+.|++.|.++.|++.++.+++|+.|-..++||-. |+.+..-..|..+|++++|.|+ +.++.++.+ +.+
T Consensus 175 ~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R 250 (737)
T KOG1524|consen 175 AN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR 250 (737)
T ss_pred cc-cceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee-eee
Confidence 32 2345678999999999999999999999999999999954 6666677789999999999999 666766653 333
Q ss_pred EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEE
Q 021459 175 IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLW 219 (312)
Q Consensus 175 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~ 219 (312)
+.......+..++|++||..+++|+..|.+.+=
T Consensus 251 ------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 251 ------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred ------------ecCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 222334567778999999999999999987653
No 184
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=1.5e-18 Score=149.19 Aligned_cols=235 Identities=18% Similarity=0.208 Sum_probs=161.9
Q ss_pred CCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCCCce-eeeeeecccccEEEEEEecC
Q 021459 43 DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDARTPFD-CLKTLRGHSDFVFCVNFNPQ 118 (312)
Q Consensus 43 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~ 118 (312)
+..|.+||..... ...+..|...+.+++|+|||+.|+.++.+ ..|++||+.++.. .+....++ ...++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999987655 34566677889999999999999887653 3699999976532 23333333 346899999
Q ss_pred CCEEEEee-cCCcEEEE--EcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee-CCCeEEEEeCCCCceeeEcccCCCCc
Q 021459 119 SNLIVSGS-FDESIRIW--EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS-HDGTCKIWDAGEGACLKTLIDDKDPA 194 (312)
Q Consensus 119 ~~~l~s~~-~dg~i~~w--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (312)
++.|+.+. .+|.+.+| |+.+++. ..+..+...+....|+|||+.++..+ .++...+|++............. .
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-G- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-C-
Confidence 99887764 67765555 6666654 34445556678899999999776554 57788888764322111222222 1
Q ss_pred EEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC--Cchhee
Q 021459 195 VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL--QQKTMI 272 (312)
Q Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~ 272 (312)
....|+|+|++|+..+.++ +.+||+.+++.......... ....+.+++++|+.++.+|.+.+|++ .++...
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~-----~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~ 408 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLD-----ESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK 408 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCC-----CCceECCCCCEEEEEEcCCCceEEEEEECCCCce
Confidence 2356999999998887764 56699988765433222111 11224578999999999998888876 346677
Q ss_pred ecccCCccceEEEEEcCCC
Q 021459 273 QKLDGHTDSVISVTCHPTE 291 (312)
Q Consensus 273 ~~~~~h~~~v~~l~~~p~~ 291 (312)
..+.+|.+.+...+|+|-.
T Consensus 409 ~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 409 ARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred EEccCCCCCCCCcccCCCC
Confidence 7888888889999999853
No 185
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=3.2e-18 Score=130.38 Aligned_cols=249 Identities=22% Similarity=0.345 Sum_probs=175.9
Q ss_pred eeecccccceEEEEECC-CCCEEEEEeCC-------CeEEEEeCCC---------cceEEEee-eccCCEEEEEEccCCC
Q 021459 16 KTLTAHSRAVSCVKFSN-DGTLLASASLD-------KTVIIWSASS---------LALVHRFV-GHSEGISDLAWSSDSH 77 (312)
Q Consensus 16 ~~~~~h~~~v~~~~~s~-~~~~l~t~~~d-------~~i~vw~~~~---------~~~~~~~~-~~~~~v~~~~~~~~~~ 77 (312)
+.|..|.+.|..++-+| +.++|+|+..+ ..+-||.+.. .+.+..+. .+-+.|.++.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 45667889999999999 55667776542 2457887643 22333333 3446899999999999
Q ss_pred eEEEEcCCCeEEEEeCCCCceeeeee-----ecccccEEEEEEec--CCCEEEEeecCCcEEEEEcCCCeEEEEe-eecC
Q 021459 78 YICSASDDRTLRIWDARTPFDCLKTL-----RGHSDFVFCVNFNP--QSNLIVSGSFDESIRIWEVKTGKCTRVI-RAHS 149 (312)
Q Consensus 78 ~l~~~~~d~~v~~wd~~~~~~~~~~~-----~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~ 149 (312)
.|++-. |..|.+|++....+....+ .++.....+-+|+| +++.+++. .|+++..||+++.++...+ .+|.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence 998764 8899999998765422222 12445567788988 67777775 5889999999988766555 4788
Q ss_pred cCeEEEEEccCCC-EEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCc--
Q 021459 150 MPVTSVHFNRDGS-LIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGK-- 225 (312)
Q Consensus 150 ~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~-- 225 (312)
..+..+.|+|+.+ +|++|+.||.|++||.|..+....-...+.-.+..+.|.|.- +++++++.|..|.+|....-.
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 8899999999876 577899999999999997665444445555567788888854 577888999999998643211
Q ss_pred ---------------------------EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459 226 ---------------------------FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ 268 (312)
Q Consensus 226 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 268 (312)
.+..+..|....++. .++..++=++|+-+.||++.|=.+..
T Consensus 295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~--aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL--AWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cccccccccccCcchhhHHhcccccccccccccccccceEEE--eeccCCCeeEEEeccCceEEeecCCh
Confidence 112334444444444 45555666789999999998876643
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.9e-19 Score=141.73 Aligned_cols=195 Identities=21% Similarity=0.346 Sum_probs=152.3
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee--
Q 021459 26 SCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL-- 103 (312)
Q Consensus 26 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~-- 103 (312)
.+++|+++|..|++++.||.+|||+..+...+.....|...|.++.|+|||++|++.+.| ..+||+.+++.. +...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence 678999999999999999999999988887777777899999999999999999999999 899999988632 2222
Q ss_pred ecccccEEEEEEecCC---CEEE--EeecCCcEEEEEcCCCeE---E--EEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459 104 RGHSDFVFCVNFNPQS---NLIV--SGSFDESIRIWEVKTGKC---T--RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC 173 (312)
Q Consensus 104 ~~~~~~v~~~~~~~~~---~~l~--s~~~dg~i~~wd~~~~~~---~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 173 (312)
..-+.....+.|+.|+ .+++ .....+.|..||+..... . +........|.+++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 2233445677888776 3333 333446677777643211 1 1111123468999999999999999999999
Q ss_pred EEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC
Q 021459 174 KIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS 222 (312)
Q Consensus 174 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 222 (312)
.+++..+-+.+.-....|...++.+.|+|+.++++.-+.+.+..+.-+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999988887776667777789999999999999998888888887654
No 187
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=4.3e-17 Score=140.12 Aligned_cols=263 Identities=16% Similarity=0.198 Sum_probs=179.1
Q ss_pred CeEEEEeCCCcceEEEeeeccCCEEEEEEcc-CCCeEEEEcCCCeEEEEeCCCCcee----e-eeeecccccEEEEEEec
Q 021459 44 KTVIIWSASSLALVHRFVGHSEGISDLAWSS-DSHYICSASDDRTLRIWDARTPFDC----L-KTLRGHSDFVFCVNFNP 117 (312)
Q Consensus 44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~~wd~~~~~~~----~-~~~~~~~~~v~~~~~~~ 117 (312)
+.+.+|++.+.........-...|.+++|+| +..+++.|..+|+|.+||++..... + .....|..++..+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 4789999887632223333467899999999 5678899999999999999765331 1 12235888999999966
Q ss_pred CC--CEEEEeecCCcEEEEEcCCCeEEE------Eee------ecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEe---CC
Q 021459 118 QS--NLIVSGSFDESIRIWEVKTGKCTR------VIR------AHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWD---AG 179 (312)
Q Consensus 118 ~~--~~l~s~~~dg~i~~wd~~~~~~~~------~~~------~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd---~~ 179 (312)
+. .-+++++.||.|..|+++.-.... ... .....+++++|.+ +...|+.|+.+|.|.--+ .+
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 43 459999999999999886432211 111 1123578899988 556899999999887632 22
Q ss_pred CCc----eeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC-CCcEEEEEEccCCceeEEEEEEEccCCcEEEE
Q 021459 180 EGA----CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS-AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS 254 (312)
Q Consensus 180 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (312)
... ........+...+..+.++|-+..++..+.|-++++|... ....+..+..+.. +.....+++.....+++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~--~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPD--YVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccc--eeeeeEEcCcCceEEEE
Confidence 211 0011122245567778888877766665569999999876 4444444433333 23445667667788999
Q ss_pred eecCCeEEEEECCch--heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 255 GSEDNCVYVWDLQQK--TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 255 ~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
+..||.|.+||+... .++....-+......+.|++.++.|+.|... +++++|++
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~--G~~~~~~l 515 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN--GTTHILKL 515 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCC--CcEEEEEc
Confidence 999999999999654 3444444455566777888889899888755 57888876
No 188
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=9.6e-21 Score=162.45 Aligned_cols=241 Identities=30% Similarity=0.542 Sum_probs=186.9
Q ss_pred ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEE
Q 021459 55 ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIW 134 (312)
Q Consensus 55 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~w 134 (312)
+.+.++.+|..+|+|..|...|.++++|++|..++||.+++. .++....||.+.+..++.+.++..+++++.|..|++|
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch-hhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 344567899999999999999999999999999999998875 6788899999999999998888889999999999999
Q ss_pred EcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCcee---eEcccCCCCcEEEEEECCCCCEEEEEe
Q 021459 135 EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL---KTLIDDKDPAVSFAKFSPNGKFILVGT 211 (312)
Q Consensus 135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
-+..+..+..+++|.+.|++++|+|-. +.+.||++++||.+-...+ +......+..+..+.+..++.-+++++
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs 335 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS 335 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence 999999999999999999999999953 7789999999998721111 111111223345556777888889999
Q ss_pred cCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCC
Q 021459 212 LDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTE 291 (312)
Q Consensus 212 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~ 291 (312)
.|+.-..|.+..... +... .+.+........+.+++-.+-.+.+|++.++.+...+.+|.+.+.-+.+||-+
T Consensus 336 ~d~ea~n~e~~~l~~------~~~~--lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 336 RDGEARNHEFEQLAW------RSNL--LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN 407 (1113)
T ss_pred CCcccccchhhHhhh------hccc--eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence 998887776532211 1111 01111111223466777788899999999999999999999999999999987
Q ss_pred ceEE-EeeecCCeeEEEEee
Q 021459 292 NKIA-SAGLDGDRTVRVWVQ 310 (312)
Q Consensus 292 ~~l~-~~~~dgd~~v~iw~~ 310 (312)
..++ ++|.|| ...||+.
T Consensus 408 ~ri~msag~dg--st~iwdi 425 (1113)
T KOG0644|consen 408 PRIAMSAGYDG--STIIWDI 425 (1113)
T ss_pred cHhhhhccCCC--ceEeeec
Confidence 6654 677664 7889985
No 189
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=1.5e-16 Score=132.78 Aligned_cols=242 Identities=13% Similarity=0.198 Sum_probs=154.0
Q ss_pred ccceEEEEECCCCCEEEEE-eCCCeEEEEeCC-Ccce--EEEeeeccCCEEEEEEccCCCeEEEEcC-CCeEEEEeCCCC
Q 021459 22 SRAVSCVKFSNDGTLLASA-SLDKTVIIWSAS-SLAL--VHRFVGHSEGISDLAWSSDSHYICSASD-DRTLRIWDARTP 96 (312)
Q Consensus 22 ~~~v~~~~~s~~~~~l~t~-~~d~~i~vw~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~wd~~~~ 96 (312)
......++++|++++|+.+ ..++.|.+|++. ++.+ ..... .......++++|++++|++++. ++.|.+|++++.
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 4567788999999988765 457889999886 3332 22221 2345678999999998888764 789999998642
Q ss_pred c---eeeeeeecccccEEEEEEecCCCEEEEee-cCCcEEEEEcCCCeEEEE-----ee-ecCcCeEEEEEccCCCEEEE
Q 021459 97 F---DCLKTLRGHSDFVFCVNFNPQSNLIVSGS-FDESIRIWEVKTGKCTRV-----IR-AHSMPVTSVHFNRDGSLIVS 166 (312)
Q Consensus 97 ~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~~-----~~-~~~~~v~~~~~~~~~~~l~~ 166 (312)
. +.+....+ .....+++++|+++++++++ .++.|.+||+.+...+.. .. ........+.|+|+++++++
T Consensus 113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv 191 (330)
T PRK11028 113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYC 191 (330)
T ss_pred CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEE
Confidence 1 11222222 23356688999999886555 558999999976332211 11 11234568899999999988
Q ss_pred eeC-CCeEEEEeCCC--Cce--eeEccc--C---CCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCc-EEEEEEccC
Q 021459 167 GSH-DGTCKIWDAGE--GAC--LKTLID--D---KDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGK-FLKIYTGHT 234 (312)
Q Consensus 167 ~~~-d~~i~iwd~~~--~~~--~~~~~~--~---~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~-~~~~~~~~~ 234 (312)
+.. ++.|.+|++.. ++. ...+.. . .......+.++|++++++++. .++.|.+|++.... ..... .+.
T Consensus 192 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~-~~~ 270 (330)
T PRK11028 192 VNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE-GHQ 270 (330)
T ss_pred EecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe-EEE
Confidence 776 89999999873 221 222211 1 011122467899999999885 47899999986433 22211 111
Q ss_pred C-ceeEEEEEEEccCCcEEEEeec-CCeEEEEECC
Q 021459 235 N-KKYCITSTFSVTNGKYIVSGSE-DNCVYVWDLQ 267 (312)
Q Consensus 235 ~-~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 267 (312)
. ....... ...+++++|++++. ++.|.+|++.
T Consensus 271 ~~~~~p~~~-~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 271 PTETQPRGF-NIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eccccCCce-EECCCCCEEEEEEccCCcEEEEEEc
Confidence 0 0011112 23467888877664 8999999874
No 190
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=6.7e-19 Score=144.89 Aligned_cols=213 Identities=21% Similarity=0.378 Sum_probs=161.5
Q ss_pred eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEe-eeccCCEEEEEEccC--CCeEEEEcCCCeEE
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRF-VGHSEGISDLAWSSD--SHYICSASDDRTLR 89 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~ 89 (312)
.+.+.|+||++=|+||.|+.+|.+|++|+.|-.+.|||.-..++++.+ .+|...|.++.|-|. .+.+++|+.|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 445678999999999999999999999999999999999988888776 489999999999994 56899999999999
Q ss_pred EEeCCC---------CceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEE-EEe---------eecC
Q 021459 90 IWDART---------PFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCT-RVI---------RAHS 149 (312)
Q Consensus 90 ~wd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~-~~~---------~~~~ 149 (312)
++|+.. ..+.......|...|..++-.|++ +.+.+++.||+|+-+|++..... ... ...-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999874 223344456688888889888887 88999999999999999863211 111 1111
Q ss_pred cCeEEEEEccC-CCEEEEeeCCCeEEEEeCCCCc------------------eeeEcccCC-----------CCcEEEEE
Q 021459 150 MPVTSVHFNRD-GSLIVSGSHDGTCKIWDAGEGA------------------CLKTLIDDK-----------DPAVSFAK 199 (312)
Q Consensus 150 ~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~------------------~~~~~~~~~-----------~~~~~~~~ 199 (312)
....++..+|. ..+|++|+.|-..++||.+... ++.-+...+ ...++.+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 34578889984 4688899999999999943210 011111000 11256678
Q ss_pred ECCCCCEEEEEecCCeEEEEEcCCCc
Q 021459 200 FSPNGKFILVGTLDSTLKLWNYSAGK 225 (312)
Q Consensus 200 ~~~~~~~l~~~~~d~~i~v~d~~~~~ 225 (312)
|+|+|.-|++.-..-.|++||+..++
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 99999988887666789999987654
No 191
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=2e-17 Score=131.46 Aligned_cols=255 Identities=24% Similarity=0.383 Sum_probs=172.7
Q ss_pred eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCC--------C--------cceEEEeeeccCCEEEEEEccC
Q 021459 12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSAS--------S--------LALVHRFVGHSEGISDLAWSSD 75 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~--------~--------~~~~~~~~~~~~~v~~~~~~~~ 75 (312)
......|..|..+|++++|+|+|++||+|+.+|.|.+|-.. + ......+.+|...|+.++|+|+
T Consensus 55 V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d 134 (434)
T KOG1009|consen 55 VEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD 134 (434)
T ss_pred EEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC
Confidence 44556788999999999999999999999999999999654 2 2234456789999999999999
Q ss_pred CCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee---------
Q 021459 76 SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--------- 146 (312)
Q Consensus 76 ~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--------- 146 (312)
+.++++++.|..+++||+..+ .....+..|...+.-++|.|-++++++-+.|...+.+.+...+......
T Consensus 135 ~~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~ 213 (434)
T KOG1009|consen 135 SNFLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAF 213 (434)
T ss_pred CceeeeeeccceEEEEEeccc-eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeeccc
Confidence 999999999999999999886 5677788899999999999999999998888877777665433221110
Q ss_pred ----------ecCc----CeEEEEEccCCCEEEEeeC----CCe-----EEEEeCCCC-ceeeEcccCCCCcEEEEEE--
Q 021459 147 ----------AHSM----PVTSVHFNRDGSLIVSGSH----DGT-----CKIWDAGEG-ACLKTLIDDKDPAVSFAKF-- 200 (312)
Q Consensus 147 ----------~~~~----~v~~~~~~~~~~~l~~~~~----d~~-----i~iwd~~~~-~~~~~~~~~~~~~~~~~~~-- 200 (312)
.|.. -...++|+|+|.++++... .+. .++|+-..- +....+..... ..-.+.+
T Consensus 214 ~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~p 292 (434)
T KOG1009|consen 214 NEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSP 292 (434)
T ss_pred CCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeee
Confidence 0111 1245788999998887542 122 233321110 01111111111 1111111
Q ss_pred ----------------CCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc-cCCceeEEEEEEEccCCcEEEEeecCCeEEE
Q 021459 201 ----------------SPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG-HTNKKYCITSTFSVTNGKYIVSGSEDNCVYV 263 (312)
Q Consensus 201 ----------------~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 263 (312)
-|-+..+|+++ .+.|++||.++...+..... |-. .++-..+.++|..|+..+.||...+
T Consensus 293 Vy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~---~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 293 VYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYS---AITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred eEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeee---eecceeecCCCcEEEEeccCCceEE
Confidence 12333455555 45799999877666554432 222 2333445578999999999999988
Q ss_pred EECCchhee
Q 021459 264 WDLQQKTMI 272 (312)
Q Consensus 264 wd~~~~~~~ 272 (312)
--++..++-
T Consensus 369 vtfe~~elg 377 (434)
T KOG1009|consen 369 VTFEPWELG 377 (434)
T ss_pred EEEcchhcc
Confidence 877665543
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=4.8e-17 Score=124.11 Aligned_cols=272 Identities=19% Similarity=0.272 Sum_probs=186.0
Q ss_pred cceEEEEECC--C-CCEEEEEeC----CCeEEEEeC--CCcceEEEe-eeccCCEEEEEEccCC-----CeEEEEcCCCe
Q 021459 23 RAVSCVKFSN--D-GTLLASASL----DKTVIIWSA--SSLALVHRF-VGHSEGISDLAWSSDS-----HYICSASDDRT 87 (312)
Q Consensus 23 ~~v~~~~~s~--~-~~~l~t~~~----d~~i~vw~~--~~~~~~~~~-~~~~~~v~~~~~~~~~-----~~l~~~~~d~~ 87 (312)
-++.++.|+. + ..+||.|+. .+.|.+..+ .+++.+..- ..|..+++.+-|.|+. ++||+++ ..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 3577888883 3 346777764 345655433 344443322 4588999999999975 3666643 47
Q ss_pred EEEEeCCCCce--ee------eeeecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeE---EEEeeecCcCeEEE
Q 021459 88 LRIWDARTPFD--CL------KTLRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKC---TRVIRAHSMPVTSV 155 (312)
Q Consensus 88 v~~wd~~~~~~--~~------~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~ 155 (312)
+++|.+..... .. ..-..+..++.+..|+. +.+++.+++.|.+..+||++++.. ...+-+|...|..+
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 99998763111 11 01123567888888876 678999999999999999998743 44667899999999
Q ss_pred EEccCC-CEEEEeeCCCeEEEEeCCCCceeeEcccCCC--CcEEEEEECCC-CCEEEEEec-CCeEEEEEcCCCc-EEEE
Q 021459 156 HFNRDG-SLIVSGSHDGTCKIWDAGEGACLKTLIDDKD--PAVSFAKFSPN-GKFILVGTL-DSTLKLWNYSAGK-FLKI 229 (312)
Q Consensus 156 ~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~l~~~~~-d~~i~v~d~~~~~-~~~~ 229 (312)
+|...+ ..|++.+.||.+++||+|.-.-...+..... .....++|+++ -+++|+-.. ...|.|.|++... .+..
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 999855 4789999999999999997543333332222 22333445553 456666544 4679999998654 5677
Q ss_pred EEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchhe---eeccc--CCccceEEEEEcCC-CceEEEee
Q 021459 230 YTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTM---IQKLD--GHTDSVISVTCHPT-ENKIASAG 298 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~--~h~~~v~~l~~~p~-~~~l~~~~ 298 (312)
+++|....+.+ .+.+.....|+++++|..+.+||+.+... ...+- .-++.|+.+.|+|. +.+++.+.
T Consensus 283 L~~H~a~VNgI--aWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 283 LRNHQASVNGI--AWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred hhcCcccccce--EecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence 88888776655 45556778999999999999999965322 11111 13567999999964 56788776
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.80 E-value=2.3e-17 Score=141.85 Aligned_cols=243 Identities=19% Similarity=0.237 Sum_probs=169.7
Q ss_pred cccceEEEEECC-CCCEEEEEeCCCeEEEEeCCCcce--EE----EeeeccCCEEEEEEccCC--CeEEEEcCCCeEEEE
Q 021459 21 HSRAVSCVKFSN-DGTLLASASLDKTVIIWSASSLAL--VH----RFVGHSEGISDLAWSSDS--HYICSASDDRTLRIW 91 (312)
Q Consensus 21 h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~--~~----~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~v~~w 91 (312)
-..+|+|++|+| +.++++.|..+|.|.+||...+.. .. ....|..++..+.|..+. .-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 456899999999 567888899999999999987654 22 234688999999998754 448999999999999
Q ss_pred eCCCCceeee-----eee------cccccEEEEEEec-CCCEEEEeecCCcEEEEEc---CCCe-----EEEEeeecCcC
Q 021459 92 DARTPFDCLK-----TLR------GHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEV---KTGK-----CTRVIRAHSMP 151 (312)
Q Consensus 92 d~~~~~~~~~-----~~~------~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~---~~~~-----~~~~~~~~~~~ 151 (312)
+++.-..... ... .-...+.+++|.+ +.+.++.|+.+|.|..=.. +... ....+..|..+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 8764221110 000 1123567888887 4567999999999876332 2221 12245567889
Q ss_pred eEEEEEccCCCEEEEeeCCCeEEEEeCC-CCceeeEcccCCCCcEEEEEECCCCC-EEEEEecCCeEEEEEcCCCcEEE-
Q 021459 152 VTSVHFNRDGSLIVSGSHDGTCKIWDAG-EGACLKTLIDDKDPAVSFAKFSPNGK-FILVGTLDSTLKLWNYSAGKFLK- 228 (312)
Q Consensus 152 v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~- 228 (312)
|+++.++|-+..++..+.|-++++|... ....+..+.. ....+..++|||-.. .++++..||.+.+||+.......
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 9999999977655555559999999876 3333333322 233377889999764 66677789999999997554322
Q ss_pred -EEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459 229 -IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ 267 (312)
Q Consensus 229 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 267 (312)
..... .......+..+.+++|+.|...|.+.+|++.
T Consensus 480 ~s~~~~---~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 480 LSQKVC---SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccccc---ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 22212 2233445566779999999999999999995
No 194
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=2.3e-17 Score=127.34 Aligned_cols=204 Identities=21% Similarity=0.317 Sum_probs=162.2
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc---ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL---ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF 97 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~ 97 (312)
-..+|+|-+|++|+..+|.+..+..+.||...+. +..+.+..|...|+.++|+|..+.|++|+.|+.-++|....+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 3578999999999999999999999999987654 4667888999999999999999999999999999999873322
Q ss_pred e--eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE----EEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459 98 D--CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT----RVIRAHSMPVTSVHFNRDGSLIVSGSHDG 171 (312)
Q Consensus 98 ~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
. ..-.+..+...+.++.|+|.++.+++|+....|.+|-.+.+..- ..-+.+...|.++.|+|++-++++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 1 22234457888999999999999999999999999877654321 12234567899999999999999999999
Q ss_pred eEEEEeCC-----CC-------------ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc
Q 021459 172 TCKIWDAG-----EG-------------ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK 225 (312)
Q Consensus 172 ~i~iwd~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 225 (312)
.+++|..- +. +...+. .....-+..+.|+|+|..|+-.+.|..+.+-|.....
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 99998531 10 111111 1234457778899999999999999999999876654
No 195
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=1.7e-17 Score=126.55 Aligned_cols=243 Identities=21% Similarity=0.335 Sum_probs=168.2
Q ss_pred CCEEEEEEcc--C-CCeEEEEcC----CCeEEEEeCC--CCceeeeeeecccccEEEEEEecCCC-----EEEEeecCCc
Q 021459 65 EGISDLAWSS--D-SHYICSASD----DRTLRIWDAR--TPFDCLKTLRGHSDFVFCVNFNPQSN-----LIVSGSFDES 130 (312)
Q Consensus 65 ~~v~~~~~~~--~-~~~l~~~~~----d~~v~~wd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~s~~~dg~ 130 (312)
..+..+.|+. + +.+|+.|+. .+.|.+..+. +.......-..|.-++..+.|.|+.. +|++++ ..
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 4567788873 3 447777764 3455555433 22111112235778899999999763 455543 47
Q ss_pred EEEEEcCCCeEE----EE-----eeecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCCCce--eeEcccCCCCcEEEE
Q 021459 131 IRIWEVKTGKCT----RV-----IRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEGAC--LKTLIDDKDPAVSFA 198 (312)
Q Consensus 131 i~~wd~~~~~~~----~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~ 198 (312)
+++|.+...... .. -..+..+++++.|+. +.+++.+++-|-++.+||+.++.. +++.+-.++..+..+
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DI 202 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDI 202 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEE
Confidence 999988632111 11 123456899999986 667899999999999999998643 344344566678888
Q ss_pred EECCCC-CEEEEEecCCeEEEEEcCCCcEEE-EEEccCCceeEEEEEEEccCCcEEEEeec-CCeEEEEECCch-heeec
Q 021459 199 KFSPNG-KFILVGTLDSTLKLWNYSAGKFLK-IYTGHTNKKYCITSTFSVTNGKYIVSGSE-DNCVYVWDLQQK-TMIQK 274 (312)
Q Consensus 199 ~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~-~~~~~ 274 (312)
+|...+ +.+|+.+.||.||+||++..+--. +++........+...+...+.+++|+-.. ...|.+-|++.. ..+.+
T Consensus 203 af~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 203 AFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred EeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 888855 477888999999999999876433 34443323334555666677888887544 467899999764 56788
Q ss_pred ccCCccceEEEEEcCCC-ceEEEeeecCCeeEEEEeec
Q 021459 275 LDGHTDSVISVTCHPTE-NKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 275 ~~~h~~~v~~l~~~p~~-~~l~~~~~dgd~~v~iw~~~ 311 (312)
+++|.+.|+.++|.|.. +.|+++| .|.++.||++.
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaG--DD~qaliWDl~ 318 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAG--DDCQALIWDLQ 318 (364)
T ss_pred hhcCcccccceEecCCCCceeeecC--CcceEEEEecc
Confidence 99999999999999975 5788887 45799999974
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=8e-17 Score=120.02 Aligned_cols=233 Identities=16% Similarity=0.221 Sum_probs=159.3
Q ss_pred CEEEEEEccCCCeEEEEcCCCeEEEEeCCC---------CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEc
Q 021459 66 GISDLAWSSDSHYICSASDDRTLRIWDART---------PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEV 136 (312)
Q Consensus 66 ~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~ 136 (312)
.|..-+|+|.+++|++|+.+|.|.+..+.. +...+...++|++++..++|.. .+|++++ ||.|+-|.-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 355667999999999999999999998743 2233455678999999999983 4677766 599998865
Q ss_pred CCCeE----EE----EeeecC-----cCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCC
Q 021459 137 KTGKC----TR----VIRAHS-----MPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN 203 (312)
Q Consensus 137 ~~~~~----~~----~~~~~~-----~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (312)
+.... .. ...-|. -.|+++...|..+.++.++.|+.+..||+++|+..+.+.++.+. +..+.....
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY-vH~vv~R~~ 167 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY-VHSVVGRNA 167 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce-eeeeeeccc
Confidence 43211 00 001111 13788999998888888889999999999999998888776665 444444444
Q ss_pred CCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce-------eEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc
Q 021459 204 GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK-------YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD 276 (312)
Q Consensus 204 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 276 (312)
...+++|+.||++|+||.++++.++.+.....+. ..+.+ ...+..+|++|+. -.+.+|+++..+....+.
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga--la~~edWlvCGgG-p~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA--LAVNEDWLVCGGG-PKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEE--EeccCceEEecCC-CceeEEeccCCCceEEEe
Confidence 5678999999999999999999887765432211 11221 2245778887765 469999998876655543
Q ss_pred CCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 277 GHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 277 ~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
-.+.|..+.|-. ..++++|. .+.|..|..
T Consensus 245 -ipa~v~~v~F~~--d~vl~~G~--g~~v~~~~l 273 (325)
T KOG0649|consen 245 -IPARVHLVDFVD--DCVLIGGE--GNHVQSYTL 273 (325)
T ss_pred -cccceeEeeeec--ceEEEecc--ccceeeeee
Confidence 234556667743 34555542 235555543
No 197
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=1.7e-18 Score=139.65 Aligned_cols=262 Identities=18% Similarity=0.269 Sum_probs=197.1
Q ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeeccc
Q 021459 28 VKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHS 107 (312)
Q Consensus 28 ~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~ 107 (312)
+.++.+|+.++.|+..|.+-.+|..++.+...+. -.+.|.++.|-.+.+++|++ ....+++||-.. .+ +..++.|
T Consensus 135 ~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G-tE-lHClk~~- 209 (545)
T KOG1272|consen 135 LDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNG-TE-LHCLKRH- 209 (545)
T ss_pred eeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCC-cE-Eeehhhc-
Confidence 7899999999999999999999999998876665 34678999999999988876 677899999653 22 3334434
Q ss_pred ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEc
Q 021459 108 DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL 187 (312)
Q Consensus 108 ~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (312)
..|..+.|-|..-+|++++..|.++--|+.+|+.+..+......+..+.-+|-+..+-+|...|+|.+|.....+.+..+
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi 289 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI 289 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH
Confidence 46788999998888999999999999999999998888877788889999998889999999999999999887776666
Q ss_pred ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459 188 IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ 267 (312)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 267 (312)
+.+ ...+..+++.++|.++++.+.|..++|||+++-..+..+...... ..+. + . .+-+++.+....|.+|.-.
T Consensus 290 LcH-~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a-~~ls--~--S-qkglLA~~~G~~v~iw~d~ 362 (545)
T KOG1272|consen 290 LCH-RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPA-SNLS--L--S-QKGLLALSYGDHVQIWKDA 362 (545)
T ss_pred Hhc-CCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCc-cccc--c--c-cccceeeecCCeeeeehhh
Confidence 554 466888999999999999999999999999987765554431111 1111 1 1 2234444555679999432
Q ss_pred -c--hheeecccCC--ccceEEEEEcCCCceEEEeeecC
Q 021459 268 -Q--KTMIQKLDGH--TDSVISVTCHPTENKIASAGLDG 301 (312)
Q Consensus 268 -~--~~~~~~~~~h--~~~v~~l~~~p~~~~l~~~~~dg 301 (312)
. ......+-.| .+.|..|.|-|-+..|-.|-..|
T Consensus 363 ~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 363 LKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 1 1111111122 34788888888776666655444
No 198
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.3e-18 Score=134.89 Aligned_cols=190 Identities=24% Similarity=0.384 Sum_probs=141.4
Q ss_pred EEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc-c
Q 021459 111 FCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI-D 189 (312)
Q Consensus 111 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~ 189 (312)
.+++|++++..+++++.||++++|+..+...+.....|...|.++.|+|||+++++.+.| ..++|+.+++..+.... .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678999999999999999999999987777777777888999999999999999999999 89999999986655443 3
Q ss_pred CCCCcEEEEEECCCC---CEEEEE--ecCCeEEEEEcCCC---cEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeE
Q 021459 190 DKDPAVSFAKFSPNG---KFILVG--TLDSTLKLWNYSAG---KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCV 261 (312)
Q Consensus 190 ~~~~~~~~~~~~~~~---~~l~~~--~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 261 (312)
..+..+..+.|+.++ .+.+.+ ..-+.|+.||+... ..++..+ .......+.+.....+|++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~-~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK-KIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh-hhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 344556667777766 333222 33456666665321 1111111 01111234555556899999999999999
Q ss_pred EEEECCchheeecc-cCCccceEEEEEcCCCceEEEeeecCC
Q 021459 262 YVWDLQQKTMIQKL-DGHTDSVISVTCHPTENKIASAGLDGD 302 (312)
Q Consensus 262 ~iwd~~~~~~~~~~-~~h~~~v~~l~~~p~~~~l~~~~~dgd 302 (312)
.+++..+-+.++.. +.|...|+.|.|+|+.+++++.+.|..
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 99999877666554 469999999999999999999886643
No 199
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.3e-18 Score=131.48 Aligned_cols=250 Identities=19% Similarity=0.306 Sum_probs=167.4
Q ss_pred eceeeecccccceEEEEECC--CCCEEEEEeCCCeEEEEeCCCcceEEEe--eecc-CCEEEEEEccCCCeEEEEc----
Q 021459 13 RHFKTLTAHSRAVSCVKFSN--DGTLLASASLDKTVIIWSASSLALVHRF--VGHS-EGISDLAWSSDSHYICSAS---- 83 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~---- 83 (312)
+.++.+.+|...++.++|.. ..+.+.+++.||.|++||+.......++ .+++ .+..+++....++.+++|.
T Consensus 61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~ 140 (376)
T KOG1188|consen 61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTR 140 (376)
T ss_pred hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecccccc
Confidence 45567788999999999976 4568999999999999999876554443 4454 3556777766777888774
Q ss_pred CCCeEEEEeCCCCceeeee-eecccccEEEEEEecC-CCEEEEeecCCcEEEEEcCCCeE---EEEeeecCcCeEEEEEc
Q 021459 84 DDRTLRIWDARTPFDCLKT-LRGHSDFVFCVNFNPQ-SNLIVSGSFDESIRIWEVKTGKC---TRVIRAHSMPVTSVHFN 158 (312)
Q Consensus 84 ~d~~v~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~~ 158 (312)
.+-.|.+||++...+.+.. ...|.+.|.+++|+|. .++|++|+-||.|.+||++.... +...-.+...|..+.|.
T Consensus 141 s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~ 220 (376)
T KOG1188|consen 141 SDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWL 220 (376)
T ss_pred CceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeee
Confidence 3568999999876553433 4569999999999995 57999999999999999975422 12222356678999998
Q ss_pred cCC-CEEEEeeCCCeEEEEeCCCCceeeEcccCC------------CCcEEEEEECC-CCCEEEEEec-CCeEEEEEcC-
Q 021459 159 RDG-SLIVSGSHDGTCKIWDAGEGACLKTLIDDK------------DPAVSFAKFSP-NGKFILVGTL-DSTLKLWNYS- 222 (312)
Q Consensus 159 ~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~l~~~~~-d~~i~v~d~~- 222 (312)
.++ +.+.+-+......+|++..+.....+.... +..+. ..+| +...++.++. -+...++-+.
T Consensus 221 ~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~--~~~~~~~~~~~l~g~~~n~~~~~~~~~ 298 (376)
T KOG1188|consen 221 SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVIN--EHSPGDKDTCALAGTDSNKGTIFPLVD 298 (376)
T ss_pred cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheee--cccCCCcceEEEeccccCceeEEEeee
Confidence 876 457888888999999998776433221110 11111 2333 3445555544 4555554332
Q ss_pred --CCc---EEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459 223 --AGK---FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266 (312)
Q Consensus 223 --~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 266 (312)
++. .+..++++... .+........+.++.||++||.+.+|..
T Consensus 299 ~~s~~~~~~~a~l~g~~~e--iVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 299 TSSGSLLTEPAILQGGHEE--IVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cccccccCccccccCCcHH--HHHHHhhhcccceeeccCCCceEEEEec
Confidence 222 23334442221 1111222345789999999999999985
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=9.1e-17 Score=138.28 Aligned_cols=207 Identities=21% Similarity=0.227 Sum_probs=141.4
Q ss_pred eeecccccceEEEEECCCCCEEEEEeCC---CeEEEEeCCCcce--EEEeeeccCCEEEEEEccCCCeEEEEc-CCCeEE
Q 021459 16 KTLTAHSRAVSCVKFSNDGTLLASASLD---KTVIIWSASSLAL--VHRFVGHSEGISDLAWSSDSHYICSAS-DDRTLR 89 (312)
Q Consensus 16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~ 89 (312)
+.+..|...+...+|||||+.|+..+.+ ..|++||+.+++. +..+.+ ....++|+|||+.|+.++ .+|.+.
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~ 273 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLN 273 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEE
Confidence 4566788899999999999999887643 3699999987653 222333 344689999999888764 577665
Q ss_pred EE--eCCCCceeeeeeecccccEEEEEEecCCCEEEEee-cCCcEEEEEcCCCe-EEEEeeecCcCeEEEEEccCCCEEE
Q 021459 90 IW--DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS-FDESIRIWEVKTGK-CTRVIRAHSMPVTSVHFNRDGSLIV 165 (312)
Q Consensus 90 ~w--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
+| |+.+. ....+..+...+....|+||++.++..+ .+|...+|++.... ....+ .+.. ....|+|+|+.++
T Consensus 274 Iy~~d~~~~--~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia 348 (429)
T PRK01742 274 IYVMGANGG--TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLV 348 (429)
T ss_pred EEEEECCCC--CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEE
Confidence 55 55543 2344555666778899999999776554 57888888764321 12222 2332 4578999999998
Q ss_pred EeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEc--CCCcEEEEEEccC
Q 021459 166 SGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNY--SAGKFLKIYTGHT 234 (312)
Q Consensus 166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~--~~~~~~~~~~~~~ 234 (312)
..+.++ +.+||+.++.... +.... ......|+|+|++|+.++.++...+|++ .+++....+..+.
T Consensus 349 ~~~~~~-i~~~Dl~~g~~~~-lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 349 MINGDN-VVKQDLTSGSTEV-LSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred EEcCCC-EEEEECCCCCeEE-ecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCC
Confidence 887765 5569998776432 11111 1234569999999999999998888775 3466555555443
No 201
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.78 E-value=1.5e-16 Score=123.60 Aligned_cols=274 Identities=21% Similarity=0.366 Sum_probs=180.1
Q ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCCeEEEEeCCCCceeeeeeecc
Q 021459 28 VKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDRTLRIWDARTPFDCLKTLRGH 106 (312)
Q Consensus 28 ~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~wd~~~~~~~~~~~~~~ 106 (312)
.+|||+|+++|+++.- .+.|-|..+.+..+.+.. -+.|.-+.|..|..+++ ....++.|.+|++..+. -...+...
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe-w~ckIdeg 90 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE-WYCKIDEG 90 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecce-eEEEeccC
Confidence 5899999999998775 788888887765443322 34577789998876555 44668899999998753 33344455
Q ss_pred cccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC---------------
Q 021459 107 SDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD--------------- 170 (312)
Q Consensus 107 ~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------- 170 (312)
...+.+++|+|||+ .|.+...+-.|.+|.+.+.+.... +-.+..+..++|+|||++.+..++.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 67788999999995 566778889999999998775432 2233456888999999987766542
Q ss_pred ---------------------CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE---
Q 021459 171 ---------------------GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF--- 226 (312)
Q Consensus 171 ---------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--- 226 (312)
+.+.+||..-...+. .-+-+-.+..+.|+|.+++|++|+.|+.+|+.+--+-+.
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~e 247 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGE 247 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheee--eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhh
Confidence 123344422211111 111223466788999999999999999988754211000
Q ss_pred -EE-------------------------E--E-----Ecc---------------------------CCceeEEEEEEEc
Q 021459 227 -LK-------------------------I--Y-----TGH---------------------------TNKKYCITSTFSV 246 (312)
Q Consensus 227 -~~-------------------------~--~-----~~~---------------------------~~~~~~~~~~~~~ 246 (312)
+. . + ..| .++...+....+.
T Consensus 248 flhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs 327 (447)
T KOG4497|consen 248 FLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS 327 (447)
T ss_pred hccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec
Confidence 00 0 0 000 0011112223334
Q ss_pred cCCcEEEEeecC--CeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 247 TNGKYIVSGSED--NCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 247 ~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
.++.+++|-.++ +.+-+||++..++...+. ...+|....|+|....|+... |..++.+|-+
T Consensus 328 ~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vct--g~srLY~W~p 390 (447)
T KOG4497|consen 328 CDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCT--GKSRLYFWAP 390 (447)
T ss_pred CCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEc--CCceEEEEcC
Confidence 566677775443 679999998877655543 356799999999998888777 5567888854
No 202
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.78 E-value=5.3e-16 Score=138.79 Aligned_cols=255 Identities=16% Similarity=0.233 Sum_probs=169.5
Q ss_pred eceeeecccccceEEEEECCC-CCEEEEEeCCCeEEEEeCCCcc-------eEEEeeeccCCEEEEEEccCCCeEEEEcC
Q 021459 13 RHFKTLTAHSRAVSCVKFSND-GTLLASASLDKTVIIWSASSLA-------LVHRFVGHSEGISDLAWSSDSHYICSASD 84 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 84 (312)
.....+..|...|..++.+++ +.+++||+.||+|++|+..... ...++.--...+..+...+.++.+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 345567778999999988764 5999999999999999976421 11122223567888999999999999999
Q ss_pred CCeEEEEeCCCC--ce----eee--eeecccccEEEEEEec--CCCEEEEeecCCcEEEEEcCCCeEEEEee--ecCcCe
Q 021459 85 DRTLRIWDARTP--FD----CLK--TLRGHSDFVFCVNFNP--QSNLIVSGSFDESIRIWEVKTGKCTRVIR--AHSMPV 152 (312)
Q Consensus 85 d~~v~~wd~~~~--~~----~~~--~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~v 152 (312)
||.|++.+++.. .. +.. ..++....+..-+|.. ....++.+..-+.|..||++.......++ ...+.|
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 999999988641 11 111 1111222233333322 22367777888899999998765443332 234679
Q ss_pred EEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC---CCCEEEEEe--cCCeEEEEEcCCCcEE
Q 021459 153 TSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP---NGKFILVGT--LDSTLKLWNYSAGKFL 227 (312)
Q Consensus 153 ~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~--~d~~i~v~d~~~~~~~ 227 (312)
++++.+|.+.+++.|+..|.+.+||+|=+..+.+........+..+..+| .....++++ ..+.|.+|++.+|..-
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 99999999999999999999999999977766655443334444444443 334454443 5688999999988654
Q ss_pred EEEEccCC----------------ceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459 228 KIYTGHTN----------------KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ 267 (312)
Q Consensus 228 ~~~~~~~~----------------~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 267 (312)
..+....+ ...+...+.....+.++.+|+.|+.|+.||..
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 44332200 00111112222346689999999999999863
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=8.4e-15 Score=115.45 Aligned_cols=185 Identities=15% Similarity=0.289 Sum_probs=139.2
Q ss_pred CCEEEEEeCC--CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee---cccc
Q 021459 34 GTLLASASLD--KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR---GHSD 108 (312)
Q Consensus 34 ~~~l~t~~~d--~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~---~~~~ 108 (312)
..++|..+.+ +.+++.++.....+-.+. ....|.++.++ .+.|+++-.+ .|+|||+.+. +.+.++. .+..
T Consensus 56 SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~M-klLhTI~t~~~n~~ 130 (391)
T KOG2110|consen 56 SSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDM-KLLHTIETTPPNPK 130 (391)
T ss_pred cceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEc--cceEEEEEcc-cEEEEecccc-eeehhhhccCCCcc
Confidence 3445544443 457888877666555443 45678788775 4466666554 4999999874 4444432 3444
Q ss_pred cEEEEEEecCCCEEEEee--cCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCe-EEEEeCCCCceee
Q 021459 109 FVFCVNFNPQSNLIVSGS--FDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT-CKIWDAGEGACLK 185 (312)
Q Consensus 109 ~v~~~~~~~~~~~l~s~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~ 185 (312)
.+.++++++.+.+++--+ ..|.|.+||+.+-+....+.+|+.++.+++|+++|.++|+++..|+ |+++.+.+++.+.
T Consensus 131 gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~ 210 (391)
T KOG2110|consen 131 GLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY 210 (391)
T ss_pred ceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee
Confidence 566666666666777543 3588999999999999999999999999999999999999999997 6899999999988
Q ss_pred EcccCC-CCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459 186 TLIDDK-DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223 (312)
Q Consensus 186 ~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 223 (312)
++.... ...+..++|+|++++|++.+..++|++|-+..
T Consensus 211 eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 211 EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 875433 23466789999999999999999999998753
No 204
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.1e-16 Score=123.14 Aligned_cols=185 Identities=21% Similarity=0.365 Sum_probs=135.6
Q ss_pred ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeee-ccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCCCce-
Q 021459 22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG-HSEGISDLAWSSD-SHYICSASDDRTLRIWDARTPFD- 98 (312)
Q Consensus 22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~~~~- 98 (312)
+..+..++|++.-.-+|.+..|-.|++|+-+.. ....++. ....|++++|-|. +..|+.|+..| |++|.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 346778999997777899999999999987763 2233332 3467999999995 45777777654 79997542111
Q ss_pred ------------eeeeeecccccEEEEEEecCCCEEEEeecC-CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEE
Q 021459 99 ------------CLKTLRGHSDFVFCVNFNPQSNLIVSGSFD-ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIV 165 (312)
Q Consensus 99 ------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
.+...++| .+|.++.|++|+..+++++.+ ..|.+||..+++.+.........+.-+.|+||+.+++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 11223345 579999999999999998875 6799999999987765544455688999999999999
Q ss_pred EeeCCCeEEEEeCCC-CceeeEcccCCCCcEEEEEECCCCCEEEEEe
Q 021459 166 SGSHDGTCKIWDAGE-GACLKTLIDDKDPAVSFAKFSPNGKFILVGT 211 (312)
Q Consensus 166 ~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
+++-|+..++|+..+ ....+-... ...+...+|+|+|.+|+...
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lg--sgrvqtacWspcGsfLLf~~ 299 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILG--SGRVQTACWSPCGSFLLFAC 299 (445)
T ss_pred Eecccceeeeehhcccceecceecc--CCceeeeeecCCCCEEEEEE
Confidence 999999999995433 333333332 23677788999999877654
No 205
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.5e-16 Score=126.28 Aligned_cols=250 Identities=14% Similarity=0.239 Sum_probs=173.0
Q ss_pred EeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC-----ceeeeee-ecccccEEEEEEecCCCEEEEeecCCcEE
Q 021459 59 RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTP-----FDCLKTL-RGHSDFVFCVNFNPQSNLIVSGSFDESIR 132 (312)
Q Consensus 59 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~-----~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~ 132 (312)
.+.+|.+.|+.+.|+.++++|++|++|..+++|++... .+.+... ..|...|+|++|+..+.++++|+.+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 35679999999999999999999999999999987531 1223322 34668999999999999999999999999
Q ss_pred EEEcCCCeEEEEeee--cCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCce-eeEc-ccCCCCcEEEEEECCCC-CEE
Q 021459 133 IWEVKTGKCTRVIRA--HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGAC-LKTL-IDDKDPAVSFAKFSPNG-KFI 207 (312)
Q Consensus 133 ~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~~~~~-~~l 207 (312)
+.|+++.+.+.++.. ..+.|+.+..+|-.+.|++.+.++.|.+||.+..+. ...+ ..........+-|.|-. .+|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 999999988776642 234899999999999999999999999999987652 2212 22233445566788865 467
Q ss_pred EEEecCCeEEEEEcCCCcE-EEEE---EccCC-ceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCc---
Q 021459 208 LVGTLDSTLKLWNYSAGKF-LKIY---TGHTN-KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHT--- 279 (312)
Q Consensus 208 ~~~~~d~~i~v~d~~~~~~-~~~~---~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~--- 279 (312)
++.+..+-+-+||.+.... +..+ .+.+. ....+.+.| .++|..+.+--....-.+||+-+..+......|.
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~-~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLW-SPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccCcccchhhhheee-CCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 7778888899999876542 1111 11111 111233333 4567777665555566678876644432222232
Q ss_pred ----cceEEEEEcCCCceEEEeeecCCeeEEEEeecC
Q 021459 280 ----DSVISVTCHPTENKIASAGLDGDRTVRVWVQDR 312 (312)
Q Consensus 280 ----~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~~ 312 (312)
..+.+++|--+ ..+++|+.+ =.|.+|.+-|
T Consensus 290 Y~N~~T~KS~~F~~D-~~v~tGSD~--~~i~~WklP~ 323 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDD-YTVATGSDH--WGIHIWKLPR 323 (609)
T ss_pred ceeeeeeeeeeeecc-eeeeccCcc--cceEEEecCC
Confidence 24556666544 457777744 5899998643
No 206
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.76 E-value=5.8e-14 Score=117.47 Aligned_cols=272 Identities=15% Similarity=0.214 Sum_probs=174.4
Q ss_pred EEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEe
Q 021459 37 LASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFN 116 (312)
Q Consensus 37 l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~ 116 (312)
+++-..++.|.+.|..+.+.+.++......-..+.++|||+++++++.|+.|.++|+.+. +.+..++.. .....++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~-~~v~~i~~G-~~~~~i~~s 86 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG-KVVATIKVG-GNPRGIAVS 86 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS-SEEEEEE-S-SEEEEEEE-
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc-cEEEEEecC-CCcceEEEc
Confidence 345667899999999999999988765443345789999999999999999999999885 456666543 345779999
Q ss_pred cCCCEEEEee-cCCcEEEEEcCCCeEEEEeeec-------CcCeEEEEEccCCCEEEEeeC-CCeEEEEeCCCCceeeEc
Q 021459 117 PQSNLIVSGS-FDESIRIWEVKTGKCTRVIRAH-------SMPVTSVHFNRDGSLIVSGSH-DGTCKIWDAGEGACLKTL 187 (312)
Q Consensus 117 ~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~ 187 (312)
+||++++++. ..+.+.++|.++.+.++.+... ...+..+..+|....++..-. .+.|.+.|......+...
T Consensus 87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~ 166 (369)
T PF02239_consen 87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT 166 (369)
T ss_dssp -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence 9999988775 5789999999999888776543 234667777888876665554 478888787664433211
Q ss_pred ccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcCCCcEEEEEEc-------------cCCc--eeE-----------E
Q 021459 188 IDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYSAGKFLKIYTG-------------HTNK--KYC-----------I 240 (312)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~-------------~~~~--~~~-----------~ 240 (312)
............|+|++++++++ ..++.|-++|..+++.+..+.. |... .+. +
T Consensus 167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~i 246 (369)
T PF02239_consen 167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLI 246 (369)
T ss_dssp EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred eecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccc
Confidence 11223345567799999987665 5567888999887765543211 0000 000 0
Q ss_pred -------------------------EEEEEccCCcEEEEe----ecCCeEEEEECCchheeecccCCc-cceEEEEEcCC
Q 021459 241 -------------------------TSTFSVTNGKYIVSG----SEDNCVYVWDLQQKTMIQKLDGHT-DSVISVTCHPT 290 (312)
Q Consensus 241 -------------------------~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~p~ 290 (312)
......|+++++.+. .+++.|.++|.++.+....+.... ..+..+.|+++
T Consensus 247 g~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~d 326 (369)
T PF02239_consen 247 GTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPD 326 (369)
T ss_dssp E--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TT
T ss_pred cCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCC
Confidence 012234667777766 556899999999987777765322 35899999999
Q ss_pred CceEEEeeecCCeeEEEEee
Q 021459 291 ENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 291 ~~~l~~~~~dgd~~v~iw~~ 310 (312)
|..+-.+..++++.|.++|.
T Consensus 327 G~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 327 GKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp SSEEEEEEE--TTEEEEEET
T ss_pred CCEEEEEEecCCCEEEEEEC
Confidence 99888888887778999875
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.7e-17 Score=134.77 Aligned_cols=166 Identities=25% Similarity=0.434 Sum_probs=129.8
Q ss_pred eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecC--CCEEEEeecCCcEEE
Q 021459 56 LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRI 133 (312)
Q Consensus 56 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~ 133 (312)
+...+.||++.|++++|+.+|.+|++|++|-.+.|||....+.....-.||...|+++.|-|. .+.+++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 345678999999999999999999999999999999987544434445789999999999984 468999999999999
Q ss_pred EEcCC----------CeEEEEeeecCcCeEEEEEccCC-CEEEEeeCCCeEEEEeCCCCceeeE-------cccC--CCC
Q 021459 134 WEVKT----------GKCTRVIRAHSMPVTSVHFNRDG-SLIVSGSHDGTCKIWDAGEGACLKT-------LIDD--KDP 193 (312)
Q Consensus 134 wd~~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~-------~~~~--~~~ 193 (312)
+|+.. ......+..|...|..++-.|++ ..|.++++||+++-+|+++...-.. +... .--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 99974 23344556788889999999988 7899999999999999987432111 1000 111
Q ss_pred cEEEEEECCCC-CEEEEEecCCeEEEEEc
Q 021459 194 AVSFAKFSPNG-KFILVGTLDSTLKLWNY 221 (312)
Q Consensus 194 ~~~~~~~~~~~-~~l~~~~~d~~i~v~d~ 221 (312)
...++.++|.. .+|++|+.|-..++||.
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 24456677754 58899999999999994
No 208
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1e-15 Score=126.91 Aligned_cols=273 Identities=19% Similarity=0.256 Sum_probs=189.6
Q ss_pred ccccceEEEEECCCCCEE-EEEeCCCeEEEEeCCCcceEEEeeecc--CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC
Q 021459 20 AHSRAVSCVKFSNDGTLL-ASASLDKTVIIWSASSLALVHRFVGHS--EGISDLAWSSDSHYICSASDDRTLRIWDARTP 96 (312)
Q Consensus 20 ~h~~~v~~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~ 96 (312)
.|....+.+..+|||+++ |||-..-.|++||+.+..+. +.-|. ..|.-.-.+.|-..++.-..|+.|.+-.....
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 477788899999999975 66777789999999876653 34443 33443344445455555667777766533211
Q ss_pred ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEE
Q 021459 97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIW 176 (312)
Q Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (312)
...++ -...-..++++.-..-|+.++....|+-++++.|+.+..+......++++..++-..+|++|+.+|.|..|
T Consensus 127 hy~~R----IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 127 HYRTR----IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred eeeee----cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEe
Confidence 11111 11233456666544445666666779999999999988888777889999999988899999999999999
Q ss_pred eCCCCceeeEccc----------CCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc
Q 021459 177 DAGEGACLKTLID----------DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV 246 (312)
Q Consensus 177 d~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
|.+.......+.. ...+.++.+.|+.+|-.+++|+.+|.+.|||++..+.+.+- .|..........+..
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQD 281 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccc
Confidence 9997665443321 12345888999999999999999999999999988765442 233222222222222
Q ss_pred c-CCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecC
Q 021459 247 T-NGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG 301 (312)
Q Consensus 247 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg 301 (312)
. ++..+++. +...++|||-.++.....+.. ...++.+++-|+...+.+|-.++
T Consensus 282 ~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 282 TDQQNKVVSM-DKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred cCCCceEEec-chHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCC
Confidence 2 23455554 567899999999888777764 44599999999999998886544
No 209
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=2.8e-16 Score=129.29 Aligned_cols=257 Identities=16% Similarity=0.226 Sum_probs=167.0
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEE-eCCCcceEEEeeeccCCE-EEEEEc-------cCCCeEEEEcCCCeEEEE
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIW-SASSLALVHRFVGHSEGI-SDLAWS-------SDSHYICSASDDRTLRIW 91 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw-~~~~~~~~~~~~~~~~~v-~~~~~~-------~~~~~l~~~~~d~~v~~w 91 (312)
|...|.|+.|+.....+.+++. ..+.+| ++.+... ..+.-...-| +.+-.- .....++.++.||.+.+.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dD-h~~~~~~~~~~~s~-~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDD-HQIFKWSDVSRDSV-EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred cceeEEeecccccceEEEeccC-ceEEEeecccchhh-hhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 5666778999887777766554 455555 4433211 1111111111 111111 123467888999999888
Q ss_pred eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459 92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG 171 (312)
Q Consensus 92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
+-.. +.-+....|.+.+.|-.|+|||.-|++++.||.|++|. ++|-...++.....+|+|++|.|+.+-++-+.. +
T Consensus 91 ~k~~--rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~ 166 (737)
T KOG1524|consen 91 NKSA--RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-G 166 (737)
T ss_pred cccc--hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-C
Confidence 6432 34456778999999999999999999999999999998 445433344445678999999998876554433 3
Q ss_pred eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcE
Q 021459 172 TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY 251 (312)
Q Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (312)
.+.+=-+.-...+-+ ...++..+-.+.|++..+.+++|+.|-..++||.... .+..- ....+.+++..+.|+ +.
T Consensus 167 h~~IKpL~~n~k~i~-WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-~Lf~S---~~~ey~ITSva~npd-~~ 240 (737)
T KOG1524|consen 167 HISIKPLAANSKIIR-WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-NLFTS---AAEEYAITSVAFNPE-KD 240 (737)
T ss_pred eEEEeecccccceeE-EeccCcEEEEeecCccccceeecCCceeEEeecccCc-ccccC---Chhccceeeeeeccc-cc
Confidence 444433333322222 2456788889999999999999999999999997543 33222 223345666666666 55
Q ss_pred EEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecC
Q 021459 252 IVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG 301 (312)
Q Consensus 252 l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg 301 (312)
++.++.+ +++ .-+...+.|..++|+|||.+++.|...|
T Consensus 241 ~~v~S~n-t~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 241 YLLWSYN-TAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred eeeeeee-eee-----------ecCCCccceEEEEEcCCCceeeccccCc
Confidence 5555432 232 1123467899999999999999887544
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=7.4e-15 Score=126.25 Aligned_cols=234 Identities=13% Similarity=0.121 Sum_probs=152.7
Q ss_pred eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC---CCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCE
Q 021459 45 TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD---DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL 121 (312)
Q Consensus 45 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 121 (312)
.|.++|....... .+..+...+.+.+|+|||+.|+..+. +..+.+|++.++.. ..+....+.+..+.|+||++.
T Consensus 180 ~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCCE
Confidence 6888887765442 34446678899999999998886542 35789999876532 122222233456899999998
Q ss_pred EEEe-ecCC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC-Ce--EEEEeCCCCceeeEcccCCCCcE
Q 021459 122 IVSG-SFDE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD-GT--CKIWDAGEGACLKTLIDDKDPAV 195 (312)
Q Consensus 122 l~s~-~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~--i~iwd~~~~~~~~~~~~~~~~~~ 195 (312)
|+.. +.+| .|++||+.+++..+.. .+...+....|+|||+.++..+.+ +. |..+|+.++... .+.. .....
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~ 333 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-EGSQN 333 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-CCCCc
Confidence 7754 4444 4889999888654433 334456788999999988766654 44 444566655432 2221 22233
Q ss_pred EEEEECCCCCEEEEEecC---CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCe---EEEEECCch
Q 021459 196 SFAKFSPNGKFILVGTLD---STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC---VYVWDLQQK 269 (312)
Q Consensus 196 ~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~---i~iwd~~~~ 269 (312)
....|+|+|++++..+.+ ..|.+||+.+++... +..... . ... .+.++|+.|+..+.++. +.++++. +
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~-~--~~p-~~SpDG~~i~~~s~~~~~~~l~~~~~~-G 407 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFL-D--ETP-SIAPNGTMVIYSSSQGMGSVLNLVSTD-G 407 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCC-C--CCc-eECCCCCEEEEEEcCCCceEEEEEECC-C
Confidence 456799999999886543 358889998776433 322111 1 111 23478999988887764 6677774 4
Q ss_pred heeecccCCccceEEEEEcCC
Q 021459 270 TMIQKLDGHTDSVISVTCHPT 290 (312)
Q Consensus 270 ~~~~~~~~h~~~v~~l~~~p~ 290 (312)
.....+.+|.+.+...+|+|-
T Consensus 408 ~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCeEECccCCCCcCCcccCCC
Confidence 455667778888899999884
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.74 E-value=1.6e-14 Score=113.94 Aligned_cols=234 Identities=15% Similarity=0.230 Sum_probs=165.0
Q ss_pred CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC--CcEEEEEcCCCeEE
Q 021459 65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD--ESIRIWEVKTGKCT 142 (312)
Q Consensus 65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~i~~wd~~~~~~~ 142 (312)
..+..+.|+.+...|..|+.||. ++|....-.+.- ........|.-+=|+. .+++..+.+ ..+++++++.+..+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~-~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCF-SKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred cceeeeeeccceeEEEccCCCce-eEEecCchHHhh-cccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence 45667779999999999998884 777665422211 1111122333333443 455544443 45889998877666
Q ss_pred EEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC--CCCEEEEE--ecCCeEEE
Q 021459 143 RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP--NGKFILVG--TLDSTLKL 218 (312)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~--~~d~~i~v 218 (312)
..+. ...+|.++.++.+ .|+++-.+ .|.|||+++.+.+.++..........+++++ .+.+|+.- ...|.|.+
T Consensus 82 Ce~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 5543 3457888888643 56666555 4999999999988887655222333344555 44588874 34689999
Q ss_pred EEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCe-EEEEECCchheeecccCCc--cceEEEEEcCCCceEE
Q 021459 219 WNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC-VYVWDLQQKTMIQKLDGHT--DSVISVTCHPTENKIA 295 (312)
Q Consensus 219 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~h~--~~v~~l~~~p~~~~l~ 295 (312)
||..+-+.+..+..|.....++ ...++|.+|||+++.|+ |+++.+.+++.+.+++-.. ..|.+|+|+|++++|+
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAal---afs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAAL---AFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred EEcccceeeeEEEecCCceeEE---EECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence 9999999888888888875554 44588999999999997 6899999999988886433 4688999999999999
Q ss_pred EeeecCCeeEEEEeec
Q 021459 296 SAGLDGDRTVRVWVQD 311 (312)
Q Consensus 296 ~~~~dgd~~v~iw~~~ 311 (312)
++|. ..+|+||.++
T Consensus 235 ~sS~--TeTVHiFKL~ 248 (391)
T KOG2110|consen 235 ASSN--TETVHIFKLE 248 (391)
T ss_pred EecC--CCeEEEEEec
Confidence 8884 4699999875
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=5.8e-15 Score=114.28 Aligned_cols=234 Identities=19% Similarity=0.278 Sum_probs=170.6
Q ss_pred ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC--ceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-
Q 021459 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTP--FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG- 139 (312)
Q Consensus 63 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~- 139 (312)
-..+|++.+|++|++.+|.+.....|.||..... .+...+++.|+..|..++|+|..+.+++++.|..-++|....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 3578999999999999999999999999986543 3566778889999999999999999999999999999998443
Q ss_pred e--EEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCc---eeeEcccCCCCcEEEEEECCCCCEEEEEecCC
Q 021459 140 K--CTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA---CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS 214 (312)
Q Consensus 140 ~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
+ ....+..+..+.+++.|+|.++.|++|+....|.+|-.+... ..+.+.......+..+.|+|++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 2 334556678889999999999999999999999888655322 11222233445688899999999999999999
Q ss_pred eEEEEEcCCC------------------cEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchh-eeecc
Q 021459 215 TLKLWNYSAG------------------KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKT-MIQKL 275 (312)
Q Consensus 215 ~i~v~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~ 275 (312)
..|+|...-. +.+..+. ....+.-. ..+.+.|..|+-.+.|..+.+-|..... .++.+
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~-v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHG-VLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceee-eEeCCCCCEeeEecCCCceEEeecCCCchhccch
Confidence 9999863110 0001111 11112222 3344678999999999999999886543 34444
Q ss_pred cCCccceEEEEEcCCCceEEEeeec
Q 021459 276 DGHTDSVISVTCHPTENKIASAGLD 300 (312)
Q Consensus 276 ~~h~~~v~~l~~~p~~~~l~~~~~d 300 (312)
..-.-+.+++.|-.+ +.++.+|+|
T Consensus 246 ~~~~lP~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 246 ATAQLPLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred hhccCCceeeEeecC-CceeecCCC
Confidence 333367777777533 455556655
No 213
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=6e-15 Score=126.89 Aligned_cols=235 Identities=17% Similarity=0.187 Sum_probs=145.5
Q ss_pred CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCCCceeeeeeecccccEEEEEEecCCC
Q 021459 44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN 120 (312)
Q Consensus 44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 120 (312)
..|.++|... .....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++... .+....+.+...+|+||++
T Consensus 176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--VVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCC
Confidence 3566777643 3334455677789999999999988877643 35999999875332 2222334566889999998
Q ss_pred EEE-EeecCCcEEEE--EcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-CCeEEEEeC--CCCceeeEcccCCCCc
Q 021459 121 LIV-SGSFDESIRIW--EVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DGTCKIWDA--GEGACLKTLIDDKDPA 194 (312)
Q Consensus 121 ~l~-s~~~dg~i~~w--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~iwd~--~~~~~~~~~~~~~~~~ 194 (312)
.++ +.+.+|...+| |+..+. ...+..+........|+|||+.++..+. ++...+|.+ .++... .+... ...
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~-g~~ 329 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFT-GSY 329 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecC-CCC
Confidence 876 56677776665 455444 3344444444567789999998876554 455666644 444322 22111 122
Q ss_pred EEEEEECCCCCEEEEEecCC---eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC---eEEEEECCc
Q 021459 195 VSFAKFSPNGKFILVGTLDS---TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN---CVYVWDLQQ 268 (312)
Q Consensus 195 ~~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~~~ 268 (312)
.....|+|+|++++..+.++ .|.+||+.+++........ .. .. ..+.++++.|+..+.++ .+.+.++.
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~-~~---~~-p~~spdg~~l~~~~~~~g~~~l~~~~~~- 403 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT-RD---ES-PSFAPNGRYILYATQQGGRSVLAAVSSD- 403 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC-Cc---cC-ceECCCCCEEEEEEecCCCEEEEEEECC-
Confidence 23457999999998876554 6999999887654332221 11 11 23346788777665443 35555653
Q ss_pred hheeecccCCccceEEEEEcCC
Q 021459 269 KTMIQKLDGHTDSVISVTCHPT 290 (312)
Q Consensus 269 ~~~~~~~~~h~~~v~~l~~~p~ 290 (312)
+.....+..+.+.+...+|+|-
T Consensus 404 g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 404 GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCceEEeecCCCCCCCCccCCC
Confidence 4444555556667777888874
No 214
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.2e-15 Score=133.09 Aligned_cols=246 Identities=22% Similarity=0.341 Sum_probs=162.5
Q ss_pred cccceEEEEECC--CCCEEEEEeCCCeEEEEeC-CC----cceEEEee---ec----cCCEEEEEEccCCCeEEEEcCCC
Q 021459 21 HSRAVSCVKFSN--DGTLLASASLDKTVIIWSA-SS----LALVHRFV---GH----SEGISDLAWSSDSHYICSASDDR 86 (312)
Q Consensus 21 h~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~-~~----~~~~~~~~---~~----~~~v~~~~~~~~~~~l~~~~~d~ 86 (312)
....|+.+.+-. |..++++|+.||.||||.- .. .+++..+. ++ .+.-.-+.|..+..+|+++++-+
T Consensus 1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCee
Confidence 345788888865 4568999999999999953 22 22332222 11 11113467887766777777789
Q ss_pred eEEEEeCCCCceeeeeeecccccEEEEEEe-cCCCEEEEeecCCcEEEEEcCCCe---EEEEeeecCcC--eEEEEEccC
Q 021459 87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFN-PQSNLIVSGSFDESIRIWEVKTGK---CTRVIRAHSMP--VTSVHFNRD 160 (312)
Q Consensus 87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~~~--v~~~~~~~~ 160 (312)
.|+|||......+.....+....+.++.-+ ..|+.+++|-.||.|++||.+... .+...+.|... |..+.+.++
T Consensus 1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence 999999976433222223333445555433 346899999999999999987432 35566778776 999999886
Q ss_pred CC-EEEEeeCCCeEEEEeCCCCceee--EcccCC--CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCC
Q 021459 161 GS-LIVSGSHDGTCKIWDAGEGACLK--TLIDDK--DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN 235 (312)
Q Consensus 161 ~~-~l~~~~~d~~i~iwd~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 235 (312)
|- .+++|+.+|.|++||++...... .+..+. +...+.+..++....+|+|+. +.|+||++.. +.+..+..+..
T Consensus 1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~ 1345 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPG 1345 (1387)
T ss_pred CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcc
Confidence 65 49999999999999999742211 111111 234778888999999999988 9999999854 43333322211
Q ss_pred ----ceeEEEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459 236 ----KKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ 268 (312)
Q Consensus 236 ----~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 268 (312)
......+..+.|---++|+|+.|.+|.||....
T Consensus 1346 F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred cccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 111122223334455789999999999997654
No 215
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=1.1e-14 Score=125.73 Aligned_cols=234 Identities=17% Similarity=0.168 Sum_probs=151.3
Q ss_pred CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCCCceeeeeeecccccEEEEEEecCCC
Q 021459 44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN 120 (312)
Q Consensus 44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 120 (312)
..|.+||...... ..+..+...+.+.+|+|||+.|+..+.+ ..|++||+.++.. ..+....+...+++|+||++
T Consensus 184 ~~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDGYNP-QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCCCCc-eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence 3688888765433 4455677789999999999998887643 4699999976532 22223334455789999998
Q ss_pred EEE-EeecCC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-CCe--EEEEeCCCCceeeEcccCCCCc
Q 021459 121 LIV-SGSFDE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DGT--CKIWDAGEGACLKTLIDDKDPA 194 (312)
Q Consensus 121 ~l~-s~~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~iwd~~~~~~~~~~~~~~~~~ 194 (312)
.++ +.+.+| .|++||+.+++.. .+..+.......+|+|||+.++..+. ++. +.++|+.+++... +... ...
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~-g~~ 337 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQ-GNY 337 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecC-CCC
Confidence 765 445555 5999999887654 34444444567899999998887664 444 6666776655332 2211 122
Q ss_pred EEEEEECCCCCEEEEEecCC---eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeec---CCeEEEEECCc
Q 021459 195 VSFAKFSPNGKFILVGTLDS---TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE---DNCVYVWDLQQ 268 (312)
Q Consensus 195 ~~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~ 268 (312)
.....|+|+|++++..+.++ .|.+||+.+++......+. .. ... .+.+++++++..+. .+.|.++++..
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~-~~---~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS-LD---ESP-SFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC-CC---CCc-eECCCCCEEEEEEecCCceEEEEEECCC
Confidence 33467999999998865443 6999999877654322211 11 111 23478887776554 34677888754
Q ss_pred hheeecccCCccceEEEEEcC
Q 021459 269 KTMIQKLDGHTDSVISVTCHP 289 (312)
Q Consensus 269 ~~~~~~~~~h~~~v~~l~~~p 289 (312)
.....+..+.+.+...+|+|
T Consensus 413 -~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 413 -RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CceEEcccCCCCCCCCccCC
Confidence 34455555556677778876
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=5.9e-16 Score=127.37 Aligned_cols=137 Identities=23% Similarity=0.432 Sum_probs=110.5
Q ss_pred ccceEEEEECCCC-CEEEEEeCCCeEEEEeCCC--------------c--------------ceEEEeeeccCCEEEEEE
Q 021459 22 SRAVSCVKFSNDG-TLLASASLDKTVIIWSASS--------------L--------------ALVHRFVGHSEGISDLAW 72 (312)
Q Consensus 22 ~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~--------------~--------------~~~~~~~~~~~~v~~~~~ 72 (312)
+..|+|++|-|.+ ..++.+-.+|.+.++|... + .++.++.--...|+.++|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 4789999999854 4666677889999996421 0 112222223457889999
Q ss_pred ccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCe
Q 021459 73 SSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPV 152 (312)
Q Consensus 73 ~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v 152 (312)
+|||++||+.+.||.++|+|..+. +++..++..-+...|++|+|||+++++|++|..|.||.+..++.+..=++|+..|
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWV 377 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWV 377 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccce
Confidence 999999999999999999998763 4555556666789999999999999999999999999999988888778999999
Q ss_pred EEEEEcc
Q 021459 153 TSVHFNR 159 (312)
Q Consensus 153 ~~~~~~~ 159 (312)
..++|.|
T Consensus 378 s~VaFDp 384 (636)
T KOG2394|consen 378 SVVAFDP 384 (636)
T ss_pred eeEeecc
Confidence 9999983
No 217
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.69 E-value=1.9e-14 Score=112.61 Aligned_cols=282 Identities=23% Similarity=0.421 Sum_probs=183.2
Q ss_pred ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc-----eEEEeeecc------------CCEEEEEEccCCC--eEEEE
Q 021459 22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA-----LVHRFVGHS------------EGISDLAWSSDSH--YICSA 82 (312)
Q Consensus 22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~~ 82 (312)
.+-|+++.|...|++||||..+|.|.++.-.... ....++.|. +.|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4678899999999999999999999999544321 122333342 3578899998764 45555
Q ss_pred cCCCeEEEEeCCCCce----------------------------------eeee-eecccccEEEEEEecCCCEEEEeec
Q 021459 83 SDDRTLRIWDARTPFD----------------------------------CLKT-LRGHSDFVFCVNFNPQSNLIVSGSF 127 (312)
Q Consensus 83 ~~d~~v~~wd~~~~~~----------------------------------~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~ 127 (312)
..|++|++|.+..... +.+. -.+|.-.|.+++++.|.+.++++.
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD- 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD- 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-
Confidence 6899999997642100 0000 124667789999999999999864
Q ss_pred CCcEEEEEcCCC-eE--EEEeeecC-----cCeEEEEEccC-CCEEEEeeCCCeEEEEeCCCCcee--------------
Q 021459 128 DESIRIWEVKTG-KC--TRVIRAHS-----MPVTSVHFNRD-GSLIVSGSHDGTCKIWDAGEGACL-------------- 184 (312)
Q Consensus 128 dg~i~~wd~~~~-~~--~~~~~~~~-----~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~-------------- 184 (312)
|-.|.+|.++-- ++ +..++.+. .-|++..|+|. .+.|+-.+..|.|++.|+|....-
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 667999988532 22 22233332 23788899994 457777888999999999854321
Q ss_pred -eEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEc-CCCcEEEEEEccCCc------------ee-EEEEEEEccCC
Q 021459 185 -KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNY-SAGKFLKIYTGHTNK------------KY-CITSTFSVTNG 249 (312)
Q Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~-~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~~ 249 (312)
+.+....-..++.+.|+++|+++++-.. -+|++||+ ...+.+..++.|... .+ ...++ +..++
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~-~sg~~ 341 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS-WSGND 341 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE-EcCCc
Confidence 1111111234667899999999987543 58999999 445666666655321 11 11222 33566
Q ss_pred cEEEEeecCCeEEEEECCchhee-------------e---cc----c-C-------------CccceEEEEEcCCCceEE
Q 021459 250 KYIVSGSEDNCVYVWDLQQKTMI-------------Q---KL----D-G-------------HTDSVISVTCHPTENKIA 295 (312)
Q Consensus 250 ~~l~~~~~dg~i~iwd~~~~~~~-------------~---~~----~-~-------------h~~~v~~l~~~p~~~~l~ 295 (312)
..++||+.+...+++++..+... . .+ . + ....+...+|||.++.+|
T Consensus 342 ~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia 421 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIA 421 (433)
T ss_pred ceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceee
Confidence 79999999999999995322110 0 00 0 0 112456678999999998
Q ss_pred EeeecCCeeEEEEe
Q 021459 296 SAGLDGDRTVRVWV 309 (312)
Q Consensus 296 ~~~~dgd~~v~iw~ 309 (312)
.+.. +.+.|+.
T Consensus 422 ~aat---nnlyif~ 432 (433)
T KOG1354|consen 422 VAAT---NNLYIFQ 432 (433)
T ss_pred eeec---CceEEec
Confidence 8864 3566653
No 218
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.69 E-value=1.1e-14 Score=111.01 Aligned_cols=152 Identities=19% Similarity=0.450 Sum_probs=106.8
Q ss_pred EEEEccCCCeEEEEcC---C-------CeEEEEeCCCCceeeeeeec-ccccEEEEEEecCCCEEEEe--ecCCcEEEEE
Q 021459 69 DLAWSSDSHYICSASD---D-------RTLRIWDARTPFDCLKTLRG-HSDFVFCVNFNPQSNLIVSG--SFDESIRIWE 135 (312)
Q Consensus 69 ~~~~~~~~~~l~~~~~---d-------~~v~~wd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~--~~dg~i~~wd 135 (312)
.+.|+++|++|+.-.. | +...+|-++........+.- ..+.|.+++|+|+++.++.. ..+..|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 5789999987765433 1 23445544322222222221 33569999999999986544 4567899999
Q ss_pred cCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC---CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec
Q 021459 136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH---DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL 212 (312)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
++ ++.+..+ +..++..+.|+|+|+++++++. .|.+.+||.++.+.+.... ...+..+.|+|+|++|++++.
T Consensus 90 ~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 90 VK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---HSDATDVEWSPDGRYLATATT 163 (194)
T ss_pred Cc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---cCcEEEEEEcCCCCEEEEEEe
Confidence 97 4444444 3557789999999999999874 3679999999877765542 234678899999999999864
Q ss_pred ------CCeEEEEEcCCCcEE
Q 021459 213 ------DSTLKLWNYSAGKFL 227 (312)
Q Consensus 213 ------d~~i~v~d~~~~~~~ 227 (312)
|+.++||++. |+.+
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l 183 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLL 183 (194)
T ss_pred ccceeccccEEEEEec-CeEe
Confidence 6788999984 5444
No 219
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.69 E-value=8.8e-14 Score=108.36 Aligned_cols=271 Identities=14% Similarity=0.193 Sum_probs=174.2
Q ss_pred cceEEEEECCCCCEEE-EEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC-eEEEEcCCCeEEEEeCCCCceee
Q 021459 23 RAVSCVKFSNDGTLLA-SASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH-YICSASDDRTLRIWDARTPFDCL 100 (312)
Q Consensus 23 ~~v~~~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~wd~~~~~~~~ 100 (312)
+.|.-+.|..|..+++ .+..++.|.+|++...+...++.....++.+++|+|||+ .|.+..-+-.|.+|.+.+.....
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 5677788988877654 557888999999998888888888888999999999995 55566678899999987743222
Q ss_pred eeeecccccEEEEEEecCCCEEEEeecC------------------------------------CcEEEEEcCCCeEEEE
Q 021459 101 KTLRGHSDFVFCVNFNPQSNLIVSGSFD------------------------------------ESIRIWEVKTGKCTRV 144 (312)
Q Consensus 101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d------------------------------------g~i~~wd~~~~~~~~~ 144 (312)
++-....+..++|+||+++.+.++.- ..+.+||.--.-.+..
T Consensus 129 --~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 129 --LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred --ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 22222345677888888776655441 1234444221111111
Q ss_pred eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceee---------------------------------------
Q 021459 145 IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLK--------------------------------------- 185 (312)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~--------------------------------------- 185 (312)
+. -...+..++|+|.++++++|+.|+.+++.+--+.+...
T Consensus 207 Ye-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 207 YE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred ee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 11 12457889999999999999999988875421110000
Q ss_pred ---------------------Ecc-----cCCCCcEEEEEECCCCCEEEEEecC--CeEEEEEcCCCcEEEEEEccCCce
Q 021459 186 ---------------------TLI-----DDKDPAVSFAKFSPNGKFILVGTLD--STLKLWNYSAGKFLKIYTGHTNKK 237 (312)
Q Consensus 186 ---------------------~~~-----~~~~~~~~~~~~~~~~~~l~~~~~d--~~i~v~d~~~~~~~~~~~~~~~~~ 237 (312)
... .+....+..++|++|..++++-... +.+-+||++..+...++....
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~--- 362 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH--- 362 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc---
Confidence 000 0011224557899999988876433 678999998876544332111
Q ss_pred eEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecC
Q 021459 238 YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG 301 (312)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg 301 (312)
.+....+.|....|+.+...-++++|-..- .......+-.-.|..+.|+-+|..++..+-|.
T Consensus 363 -piraf~WdP~~prL~vctg~srLY~W~psg-~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 363 -PIRAFEWDPGRPRLVVCTGKSRLYFWAPSG-PRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred -ceeEEEeCCCCceEEEEcCCceEEEEcCCC-ceEEecCCCCceeeeEEecCCCcEEEEEcCCc
Confidence 122222334444555566666799998764 33333333446799999999999998887553
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.9e-14 Score=122.66 Aligned_cols=200 Identities=23% Similarity=0.257 Sum_probs=130.8
Q ss_pred eecccccceEEEEECCCCCEEEEEeCC---CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCCeEEEEe
Q 021459 17 TLTAHSRAVSCVKFSNDGTLLASASLD---KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDRTLRIWD 92 (312)
Q Consensus 17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~wd 92 (312)
.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.. .+......+...+|+|||+.|+ +.+.++...+|.
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 345677889999999999998876542 45999999887653 3333445566899999998776 566777766665
Q ss_pred CCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CCcEEEEEc--CCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459 93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DESIRIWEV--KTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH 169 (312)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~~wd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
+.........+..+........|+||++.++..+. +|...+|.+ .+++.... ...........|+|+|++++..+.
T Consensus 269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCceEECCCCCEEEEEEc
Confidence 43211223444445555567889999998776554 456666654 44443222 222223446789999999987665
Q ss_pred CC---eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC---eEEEEEc
Q 021459 170 DG---TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS---TLKLWNY 221 (312)
Q Consensus 170 d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~v~d~ 221 (312)
++ .|.+||+.+++.. .+... .......|+|||+.|+..+.++ .+.+.+.
T Consensus 348 ~~g~~~I~v~d~~~g~~~-~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVT-ALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred cCCcEEEEEEECCCCCeE-EccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 54 5899999877643 23221 1224467999999998877554 3444454
No 221
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.5e-13 Score=118.75 Aligned_cols=234 Identities=18% Similarity=0.183 Sum_probs=150.4
Q ss_pred CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC---CCeEEEEeCCCCceeeeeeecccccEEEEEEecCCC
Q 021459 44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD---DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN 120 (312)
Q Consensus 44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 120 (312)
..|.++|...... ..+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.. ..+..+.+.+...+|+||++
T Consensus 182 ~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence 3678888754433 456667788999999999998887753 46899999977532 33444556677889999998
Q ss_pred EEE-EeecCCc--EEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-CC--eEEEEeCCCCceeeEcccCCCCc
Q 021459 121 LIV-SGSFDES--IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DG--TCKIWDAGEGACLKTLIDDKDPA 194 (312)
Q Consensus 121 ~l~-s~~~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~ 194 (312)
.++ +.+.++. |++||+.+++.. .+..+........|+|||+.++..+. ++ .|.++|+..+... .+... ...
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~-~~~ 335 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFG-GGR 335 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecC-CCc
Confidence 765 5555554 777898877654 34445555667899999998887663 33 5778887665433 23221 223
Q ss_pred EEEEEECCCCCEEEEEecC---CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC------CeEEEEE
Q 021459 195 VSFAKFSPNGKFILVGTLD---STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED------NCVYVWD 265 (312)
Q Consensus 195 ~~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------g~i~iwd 265 (312)
.....|+|+|+.|+....+ ..|.+||+..+.. +.+.... . .....+.++++.|+..+.+ ..+.++|
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~-~---~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~d 410 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGF-L---VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVD 410 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCC-C---CCCCeECCCCCEEEEEEccCCCCCcceEEEEE
Confidence 4446799999999887543 3688888755443 3332211 1 1112234678887654432 3678888
Q ss_pred CCchheeecccCCccceEEEEEcCC
Q 021459 266 LQQKTMIQKLDGHTDSVISVTCHPT 290 (312)
Q Consensus 266 ~~~~~~~~~~~~h~~~v~~l~~~p~ 290 (312)
+..+.. ..+. ....+...+|+|-
T Consensus 411 l~g~~~-~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 411 LTGRNE-REVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCCCce-EEcc-CCCCccCcccCCC
Confidence 865443 3443 2334566677764
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=2.5e-14 Score=113.60 Aligned_cols=260 Identities=15% Similarity=0.242 Sum_probs=171.0
Q ss_pred ccceEEEEECCCCC--EEEEEeCCCeEEEEeCCCcceEEE------eeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeC
Q 021459 22 SRAVSCVKFSNDGT--LLASASLDKTVIIWSASSLALVHR------FVGHSEGISDLAWSSDSHYICSASDDRTLRIWDA 93 (312)
Q Consensus 22 ~~~v~~~~~s~~~~--~l~t~~~d~~i~vw~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~ 93 (312)
...|+.+.|.-+++ .+...+.+..+..+.......... .......|..++.. ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 44667777765443 444444555666655554333222 12223445444432 336778889999999987
Q ss_pred CCCc---eeeeeeecccccEEEEEEecC-CCEEEEeecC--CcEEEEEcCCCeEEEEeeecC-----------cCeEEEE
Q 021459 94 RTPF---DCLKTLRGHSDFVFCVNFNPQ-SNLIVSGSFD--ESIRIWEVKTGKCTRVIRAHS-----------MPVTSVH 156 (312)
Q Consensus 94 ~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~-----------~~v~~~~ 156 (312)
..+. ..+..+..+ ..+..+.-.+. ...+++|+.. ..+++||+++.+.+ +.+.. ..++++.
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi--w~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI--WSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceee--eeccCCCCccccceeeeeeccce
Confidence 6331 112222222 33445555553 3466778888 78999999987443 33321 2356788
Q ss_pred EccC--CCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE-EEcc
Q 021459 157 FNRD--GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI-YTGH 233 (312)
Q Consensus 157 ~~~~--~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~ 233 (312)
|-+. ...|++++.-+.+++||.+.++.....+.-....++++...|+++++.+|...+.+..||.+.++.+.. +.+-
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 8887 789999999999999999876544333333456788888999999999999999999999999987765 5555
Q ss_pred CCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCC
Q 021459 234 TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPT 290 (312)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~ 290 (312)
.+.+..+. ..+...++++++-|..|+|+|+.+..++...-- ....+++-+.++
T Consensus 290 tGsirsih---~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 290 TGSIRSIH---CHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDD 342 (412)
T ss_pred cCCcceEE---EcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCC
Confidence 55544443 346778999999999999999998766544321 223455555443
No 223
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.68 E-value=5.3e-16 Score=116.93 Aligned_cols=158 Identities=22% Similarity=0.345 Sum_probs=125.2
Q ss_pred cccceEEEEECC-CCC--EEEEEeCCCeEEEEeCCCc----------ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459 21 HSRAVSCVKFSN-DGT--LLASASLDKTVIIWSASSL----------ALVHRFVGHSEGISDLAWSSDSHYICSASDDRT 87 (312)
Q Consensus 21 h~~~v~~~~~s~-~~~--~l~t~~~d~~i~vw~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 87 (312)
..+.+.|.++.. ++. +++.|-++|.+.+||+..+ +....+..|.++|.++.|.+.-..=++|+.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 456777877543 333 4677888999999999886 344455679999999999886655567888888
Q ss_pred EEEEeCCCCceeee---eeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEE
Q 021459 88 LRIWDARTPFDCLK---TLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI 164 (312)
Q Consensus 88 v~~wd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
+..|+++.....+. ...-..-.+..+..-||++.++++++|+.|++|.-++.+.+..++-|...|++++|+|+.+++
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence 89998764321111 111112346667888999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCeEEEEeC
Q 021459 165 VSGSHDGTCKIWDA 178 (312)
Q Consensus 165 ~~~~~d~~i~iwd~ 178 (312)
++++.|++|.+|++
T Consensus 309 AaaskD~rISLWkL 322 (323)
T KOG0322|consen 309 AAASKDARISLWKL 322 (323)
T ss_pred hhccCCceEEeeec
Confidence 99999999999986
No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=1.1e-13 Score=119.02 Aligned_cols=209 Identities=16% Similarity=0.173 Sum_probs=136.2
Q ss_pred eecccccceEEEEECCCCCEEEEEe---CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-cCCC--eEEE
Q 021459 17 TLTAHSRAVSCVKFSNDGTLLASAS---LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-SDDR--TLRI 90 (312)
Q Consensus 17 ~~~~h~~~v~~~~~s~~~~~l~t~~---~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~v~~ 90 (312)
.+..+...+...+|||||+.|+..+ .+..+.+|++.+++... +......+..++|+|||+.|+.. +.++ .|++
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 3445667889999999999888654 23578899988775432 22233345578999999988754 4444 5888
Q ss_pred EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC-Cc--EEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe
Q 021459 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD-ES--IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG 167 (312)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~--i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
||+.++. ...+..+...+....|+||++.++..+.+ +. |+++|+.+++.. .+...........|+|||++++..
T Consensus 272 ~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 272 MDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred EECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEE
Confidence 9987643 23333344456788999999988766653 44 445566666543 333333445678899999998876
Q ss_pred eCC---CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCe---EEEEEcCCCcEEEEEEcc
Q 021459 168 SHD---GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDST---LKLWNYSAGKFLKIYTGH 233 (312)
Q Consensus 168 ~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~---i~v~d~~~~~~~~~~~~~ 233 (312)
+.+ ..+.+||+.++... .+... .......|+|||++|+.++.++. +.++++. +.....+..+
T Consensus 349 ~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~ 416 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPAT 416 (429)
T ss_pred EccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccC
Confidence 543 35888998877533 22221 11234569999999999887764 6677763 4433444333
No 225
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.67 E-value=2.4e-14 Score=109.11 Aligned_cols=151 Identities=19% Similarity=0.356 Sum_probs=105.9
Q ss_pred EEEECCCCCEEEEEeC---C-------CeEEEEeCCC-cceEEEeee-ccCCEEEEEEccCCCeEEEE--cCCCeEEEEe
Q 021459 27 CVKFSNDGTLLASASL---D-------KTVIIWSASS-LALVHRFVG-HSEGISDLAWSSDSHYICSA--SDDRTLRIWD 92 (312)
Q Consensus 27 ~~~~s~~~~~l~t~~~---d-------~~i~vw~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~d~~v~~wd 92 (312)
.+.|+|+|++|+.-.. | +...+|.+.. ......+.- ..++|.+++|+|+|+.++++ ..++.+.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4789999987654322 1 2344454421 222333332 34569999999999987654 4567999999
Q ss_pred CCCCceeeeeeecccccEEEEEEecCCCEEEEeecC---CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC
Q 021459 93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD---ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH 169 (312)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
++. +.+..+. ...+..+.|+|+|++++.++.+ |.|.+||.++.+.+...+ | ..+..++|+|+|+++++++.
T Consensus 90 ~~~--~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 90 VKG--KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred Ccc--cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 963 3344443 4567789999999999998754 679999999888776654 2 34789999999999998874
Q ss_pred ------CCeEEEEeCCCCcee
Q 021459 170 ------DGTCKIWDAGEGACL 184 (312)
Q Consensus 170 ------d~~i~iwd~~~~~~~ 184 (312)
|+.++||+.. |+.+
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l 183 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLL 183 (194)
T ss_pred ccceeccccEEEEEec-CeEe
Confidence 6778999874 4443
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=3.2e-13 Score=104.66 Aligned_cols=177 Identities=19% Similarity=0.335 Sum_probs=130.8
Q ss_pred CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecc--cccEEEEEEecCCCE
Q 021459 44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGH--SDFVFCVNFNPQSNL 121 (312)
Q Consensus 44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ 121 (312)
..+.|||-....++..+. ...+|.++.+.++ .|++. .++.|++|...+..+.+..+.-. .....+++-..+...
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 479999966566655544 5678999998765 45544 46789999876444444433221 222333333333345
Q ss_pred EEEeec-CCcEEEEEcCCCeE--EEEeeecCcCeEEEEEccCCCEEEEeeCCCe-EEEEeCCCCceeeEcccC-CCCcEE
Q 021459 122 IVSGSF-DESIRIWEVKTGKC--TRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT-CKIWDAGEGACLKTLIDD-KDPAVS 196 (312)
Q Consensus 122 l~s~~~-dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~-~~~~~~ 196 (312)
|+.-+. -|.|++-|+...+. ...+.+|...|.|++++.+|..+|+++..|+ |+|||..++..+.++... ....+.
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 555443 48999999976655 4678899999999999999999999999997 789999999988877543 345688
Q ss_pred EEEECCCCCEEEEEecCCeEEEEEcCCC
Q 021459 197 FAKFSPNGKFILVGTLDSTLKLWNYSAG 224 (312)
Q Consensus 197 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 224 (312)
.++|+|++.+|++++..|+++||.++..
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 8999999999999999999999998754
No 227
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.67 E-value=5.2e-14 Score=126.34 Aligned_cols=257 Identities=20% Similarity=0.215 Sum_probs=166.3
Q ss_pred cceEEEeeeccCCEEEEEEccCC-CeEEEEcCCCeEEEEeCCCCc------eeeeeeecccccEEEEEEecCCCEEEEee
Q 021459 54 LALVHRFVGHSEGISDLAWSSDS-HYICSASDDRTLRIWDARTPF------DCLKTLRGHSDFVFCVNFNPQSNLIVSGS 126 (312)
Q Consensus 54 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~wd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 126 (312)
|.++..+..|...|..++.+++. .++++|+.||+|++||.+... +...++......+.++..-+.++.++.++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 55667777889999999988764 899999999999999975421 11122222345677888888899999999
Q ss_pred cCCcEEEEEcCC--CeE-----EEEeeecC-cC-eEEEEEcc-CCC-EEEEeeCCCeEEEEeCCCCceeeEccc-CCCCc
Q 021459 127 FDESIRIWEVKT--GKC-----TRVIRAHS-MP-VTSVHFNR-DGS-LIVSGSHDGTCKIWDAGEGACLKTLID-DKDPA 194 (312)
Q Consensus 127 ~dg~i~~wd~~~--~~~-----~~~~~~~~-~~-v~~~~~~~-~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~ 194 (312)
.||.|.+.++.. .+. .+....+. +. +..-++.. .+. .++.+...+.|..||++.....-+... ...+.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 999999998865 211 11111121 22 33333333 233 677888889999999987554333221 12356
Q ss_pred EEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCC-ceeEEEEEEEccCCcEEEE-ee-cCCeEEEEECCchhe
Q 021459 195 VSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTN-KKYCITSTFSVTNGKYIVS-GS-EDNCVYVWDLQQKTM 271 (312)
Q Consensus 195 ~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~~-~dg~i~iwd~~~~~~ 271 (312)
++.++.+|.+.++++|+..|.+-+||++-+..+..+..... ...-+..+...+.....++ ++ ..+.|.+|++.++..
T Consensus 1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 88888999999999999999999999998887766543222 2222333333343344444 44 688999999977643
Q ss_pred eecccC-------------------CccceEEEEEcCCCceEEEeeecCCeeEEEEeecC
Q 021459 272 IQKLDG-------------------HTDSVISVTCHPTENKIASAGLDGDRTVRVWVQDR 312 (312)
Q Consensus 272 ~~~~~~-------------------h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~~ 312 (312)
-..+.. +.-......+-..+..+.++|.| ..||.||..+
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd--~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSD--MKIRKWDPTR 1335 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCc--cceeeccCCC
Confidence 322211 11112222333334577788754 5899999743
No 228
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=1.2e-12 Score=101.62 Aligned_cols=236 Identities=17% Similarity=0.261 Sum_probs=154.0
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCC------CeEEEEeCCCCce
Q 021459 26 SCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDD------RTLRIWDARTPFD 98 (312)
Q Consensus 26 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d------~~v~~wd~~~~~~ 98 (312)
.+++|..|..-++.|..+| .++|+.+..+.....+-+.+++.-+..--..++|+ .|+.+ ..|.|||-.. ..
T Consensus 9 lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k-~~ 86 (346)
T KOG2111|consen 9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK-ER 86 (346)
T ss_pred eEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-Cc
Confidence 3489999988888876665 89999887554333333333321111111233444 34333 4799999433 34
Q ss_pred eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC-CCeEEEEeeecCc--CeEEEEEccCCCEEEE-eeCCCeEE
Q 021459 99 CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK-TGKCTRVIRAHSM--PVTSVHFNRDGSLIVS-GSHDGTCK 174 (312)
Q Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~-~~~d~~i~ 174 (312)
++..+. -..+|.++.+.++ .+++. .++.|++|... +.+.++.+..... ...++.-+.+..+|+. |-.-|.|+
T Consensus 87 ~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred EEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 454443 4567889988875 34443 46689999887 4455555543322 2333332223334443 55679999
Q ss_pred EEeCCCCce-eeEcccCCCCcEEEEEECCCCCEEEEEecCCe-EEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459 175 IWDAGEGAC-LKTLIDDKDPAVSFAKFSPNGKFILVGTLDST-LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI 252 (312)
Q Consensus 175 iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
+-|+..... ...+...++..+.+++.+.+|..+|+++..|+ |||||..+|+.+..+........ +-.....+++.+|
T Consensus 163 i~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~-iy~iaFSp~~s~L 241 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRAD-IYCIAFSPNSSWL 241 (346)
T ss_pred EEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchhe-EEEEEeCCCccEE
Confidence 999886554 22445667888999999999999999999997 69999999999887765444322 2223345789999
Q ss_pred EEeecCCeEEEEECCc
Q 021459 253 VSGSEDNCVYVWDLQQ 268 (312)
Q Consensus 253 ~~~~~dg~i~iwd~~~ 268 (312)
++.|+.|+|++|.++.
T Consensus 242 avsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 242 AVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEcCCCeEEEEEeec
Confidence 9999999999998854
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=7.7e-14 Score=120.60 Aligned_cols=204 Identities=15% Similarity=0.113 Sum_probs=140.1
Q ss_pred eeecccccceEEEEECCCCCEEEEEeC---CCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCCe--EE
Q 021459 16 KTLTAHSRAVSCVKFSNDGTLLASASL---DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDRT--LR 89 (312)
Q Consensus 16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--v~ 89 (312)
+.+..|...+...+|+|||+.|+..+. +..|.+|++.+++.. .+..+.+.+...+|+|||+.|+ +.+.++. |+
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 456678889999999999998887653 468999999887653 4455666778899999998775 4555554 77
Q ss_pred EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459 90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS 166 (312)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
+||+.++. ...+..+........|+||++.++..+. +| .|+++|+..++... +..+...+....|+|+|+.++.
T Consensus 274 ~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~ 350 (435)
T PRK05137 274 TMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAF 350 (435)
T ss_pred EEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEE
Confidence 77887642 3445555555677899999998877653 33 58888887665433 3333445667889999999887
Q ss_pred eeCC---CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecC------CeEEEEEcCCCcE
Q 021459 167 GSHD---GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD------STLKLWNYSAGKF 226 (312)
Q Consensus 167 ~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~ 226 (312)
...+ ..|.+||+..+.. ..+.. ........|+|||+.|+..+.+ ..++++|+..+..
T Consensus 351 ~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 351 TKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 6543 3578888755432 22222 1234456799999998876543 2577777755443
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=1.3e-13 Score=118.97 Aligned_cols=201 Identities=18% Similarity=0.188 Sum_probs=135.3
Q ss_pred eeecccccceEEEEECCCCCEEEEEeCC---CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCC--eEE
Q 021459 16 KTLTAHSRAVSCVKFSNDGTLLASASLD---KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDR--TLR 89 (312)
Q Consensus 16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~v~ 89 (312)
+.+..|...+...+|+|||+.|+..+.+ ..|.+|++.+++.. .+.........++|+|+|+.|+ +.+.++ .|+
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 3455677789999999999998887643 46999999877653 2333344455789999998775 445555 589
Q ss_pred EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CCc--EEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459 90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DES--IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS 166 (312)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
+||+.++. ...+..+.......+|+||++.++..+. +|. |+++|+.+++.... ..+.......+|+|+|+.++.
T Consensus 276 ~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~~~~~SpDG~~Ia~ 352 (433)
T PRK04922 276 VMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNARASVSPDGKKIAM 352 (433)
T ss_pred EEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCccCEEECCCCCEEEE
Confidence 99987653 3344445445567899999998876653 444 66667776654332 223333456899999999887
Q ss_pred eeCCC---eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecC---CeEEEEEcCC
Q 021459 167 GSHDG---TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD---STLKLWNYSA 223 (312)
Q Consensus 167 ~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~v~d~~~ 223 (312)
.+.++ .|.+||+.+++.. .+... .......|+|||++++..+.+ +.|.+++...
T Consensus 353 ~~~~~~~~~I~v~d~~~g~~~-~Lt~~--~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 353 VHGSGGQYRIAVMDLSTGSVR-TLTPG--SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EECCCCceeEEEEECCCCCeE-ECCCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 65443 5899998776543 33221 122345799999988877653 3577777744
No 231
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=6.9e-14 Score=111.11 Aligned_cols=206 Identities=12% Similarity=0.230 Sum_probs=155.0
Q ss_pred eecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc----eEEEeeeccCCEEEEEEccCC-CeEEEEcCC--CeEE
Q 021459 17 TLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA----LVHRFVGHSEGISDLAWSSDS-HYICSASDD--RTLR 89 (312)
Q Consensus 17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d--~~v~ 89 (312)
+...-.++|..++.. ...|++|-.+|.+.+|....+. .+..+..+ .++..+.-++.. .++++|+.. ..+.
T Consensus 100 ~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELK 176 (412)
T ss_pred ccccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhccccee
Confidence 344455666666543 3457788889999999887332 22333333 456667777654 456668888 7899
Q ss_pred EEeCCCCceeeeeeec---------ccccEEEEEEecC--CCEEEEeecCCcEEEEEcCCCeE-EEEeeecCcCeEEEEE
Q 021459 90 IWDARTPFDCLKTLRG---------HSDFVFCVNFNPQ--SNLIVSGSFDESIRIWEVKTGKC-TRVIRAHSMPVTSVHF 157 (312)
Q Consensus 90 ~wd~~~~~~~~~~~~~---------~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~ 157 (312)
+||++.. +.+..-+. -.-.+..+.|-+. ...|++++.-+.+++||++.++. +..+..-..+++++..
T Consensus 177 iwdle~~-~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l 255 (412)
T KOG3881|consen 177 IWDLEQS-KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL 255 (412)
T ss_pred eeecccc-eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee
Confidence 9999875 32222111 1123567788876 78999999999999999987754 4455556778999999
Q ss_pred ccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE
Q 021459 158 NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF 226 (312)
Q Consensus 158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 226 (312)
.|.++++++|..-+.+..||++.+...........+.++.+..+|..+++++++.|..|||+|.++.+.
T Consensus 256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 256 TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 999999999999999999999999888776666677889999999999999999999999999988544
No 232
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=1.7e-14 Score=118.88 Aligned_cols=170 Identities=16% Similarity=0.234 Sum_probs=123.5
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCcceEE----EeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCCCc---------
Q 021459 32 NDGTLLASASLDKTVIIWSASSLALVH----RFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDARTPF--------- 97 (312)
Q Consensus 32 ~~~~~l~t~~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~~~--------- 97 (312)
|++--++.|-..|.+.+.+....+... ...-.+..|+++.|-|- ...++.+-.+|.+++||.+...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 455567777777888877665422111 00112468999999984 4466667789999999763210
Q ss_pred -------e-----------eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc
Q 021459 98 -------D-----------CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR 159 (312)
Q Consensus 98 -------~-----------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~ 159 (312)
. .+..+.--.+.|...+|+||+++|++.+.||.++|||..+.+.+..++.--....|++|+|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence 0 0001111124577889999999999999999999999998877666655556789999999
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC
Q 021459 160 DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP 202 (312)
Q Consensus 160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (312)
||+++++|++|.-|.+|.+...+.+..-.+ +...+..++|+|
T Consensus 343 DGKyIvtGGEDDLVtVwSf~erRVVARGqG-HkSWVs~VaFDp 384 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEERRVVARGQG-HKSWVSVVAFDP 384 (636)
T ss_pred CccEEEecCCcceEEEEEeccceEEEeccc-cccceeeEeecc
Confidence 999999999999999999998887766543 567788899987
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=2.1e-11 Score=102.19 Aligned_cols=256 Identities=19% Similarity=0.218 Sum_probs=155.8
Q ss_pred eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEc-CCCeEEEEeCC
Q 021459 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSAS-DDRTLRIWDAR 94 (312)
Q Consensus 16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~wd~~ 94 (312)
.++......-..+.|+|||++++.++.||.|.++|+.+.+.+.++..- .....+++++||++++++. .++.+.++|.+
T Consensus 30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence 344433333344789999999999999999999999999998888753 4467899999999998775 57899999988
Q ss_pred CCceeeeeeecc-------cccEEEEEEecCCCEEEEeec-CCcEEEEEcCCCeEEEE-eeecCcCeEEEEEccCCCEEE
Q 021459 95 TPFDCLKTLRGH-------SDFVFCVNFNPQSNLIVSGSF-DESIRIWEVKTGKCTRV-IRAHSMPVTSVHFNRDGSLIV 165 (312)
Q Consensus 95 ~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~ 165 (312)
+. +.++.+... ...+..+..+|....++..-. .+.|.+-|....+.+.. ............|+|++++++
T Consensus 109 tl-e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 109 TL-EPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp T---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred cc-cceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence 74 455554322 235667777787775555544 47787778766543322 222334567889999999876
Q ss_pred Ee-eCCCeEEEEeCCCCceeeEcccC------------------------------------------------------
Q 021459 166 SG-SHDGTCKIWDAGEGACLKTLIDD------------------------------------------------------ 190 (312)
Q Consensus 166 ~~-~~d~~i~iwd~~~~~~~~~~~~~------------------------------------------------------ 190 (312)
++ ..++.+-++|..+++....+...
T Consensus 188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~ 267 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT 267 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred ecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC
Confidence 64 45567878887665433221000
Q ss_pred CCCcEEEEEECCCCCEEEEE----ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE-EEee-cCCeEEEE
Q 021459 191 KDPAVSFAKFSPNGKFILVG----TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI-VSGS-EDNCVYVW 264 (312)
Q Consensus 191 ~~~~~~~~~~~~~~~~l~~~----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~-~dg~i~iw 264 (312)
.... .++..+|+++++.+. ...+.|.++|.++.+.+..+...... ..+...+. ++|+.+ ++.- .+|.|.+|
T Consensus 268 ~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~-~~~h~ef~-~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 268 QGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGK-RVVHMEFN-PDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT---EEEEEE--TTSSEEEEEEE--TTEEEEE
T ss_pred CCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCC-cEeccEEC-CCCCEEEEEEecCCCEEEEE
Confidence 0011 234578999999987 44579999999888766655432221 13344444 566643 4443 44489999
Q ss_pred ECCchheeeccc
Q 021459 265 DLQQKTMIQKLD 276 (312)
Q Consensus 265 d~~~~~~~~~~~ 276 (312)
|..+.+...++.
T Consensus 345 D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 345 DAKTLKEKKRIP 356 (369)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCcEEEEEEE
Confidence 999988887765
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=4e-15 Score=120.50 Aligned_cols=232 Identities=17% Similarity=0.260 Sum_probs=175.6
Q ss_pred cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE
Q 021459 64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR 143 (312)
Q Consensus 64 ~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 143 (312)
..+-+.+.++.+|++|+.|+..|.|-.+|..+. .....+ .-...|.++.|-.+..++++ .....+++|| +.|..+.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~-~L~~Ei-~v~Etv~Dv~~LHneq~~AV-AQK~y~yvYD-~~GtElH 204 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK-KLHFEI-NVMETVRDVTFLHNEQFFAV-AQKKYVYVYD-NNGTELH 204 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccc-eeeeee-ehhhhhhhhhhhcchHHHHh-hhhceEEEec-CCCcEEe
Confidence 345577899999999999999999999998874 322222 23356777888666555555 4677899999 5577777
Q ss_pred EeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459 144 VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223 (312)
Q Consensus 144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 223 (312)
.++.| ..|..+.|-|.--+|++++..|.++.-|+..|+.+..+... ...+..+.-.|-...+-+|...|+|.+|....
T Consensus 205 Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~-~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 205 CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG-AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred ehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc-CCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 77655 46889999999989999999999999999999988776543 34456667788888888999999999999888
Q ss_pred CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCe
Q 021459 224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDR 303 (312)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~ 303 (312)
.+.+..+..|......+. ..++|.+++|.+.|..++|||+++...+..+.. ..+...+++|..| .||.+- | .
T Consensus 283 kePLvKiLcH~g~V~siA---v~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~--G-~ 354 (545)
T KOG1272|consen 283 KEPLVKILCHRGPVSSIA---VDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALSY--G-D 354 (545)
T ss_pred cchHHHHHhcCCCcceEE---ECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceeeec--C-C
Confidence 877666666777655543 357899999999999999999988765555443 3456788888765 454444 2 2
Q ss_pred eEEEEe
Q 021459 304 TVRVWV 309 (312)
Q Consensus 304 ~v~iw~ 309 (312)
.|-||.
T Consensus 355 ~v~iw~ 360 (545)
T KOG1272|consen 355 HVQIWK 360 (545)
T ss_pred eeeeeh
Confidence 678884
No 235
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=3.2e-12 Score=100.95 Aligned_cols=243 Identities=17% Similarity=0.249 Sum_probs=151.3
Q ss_pred cccceEEEEECCCC-CEEEEEeCCCeEEEEeCCCc-c-------------eEEEeeeccCCEEEEEEccCCCeEEEEcC-
Q 021459 21 HSRAVSCVKFSNDG-TLLASASLDKTVIIWSASSL-A-------------LVHRFVGHSEGISDLAWSSDSHYICSASD- 84 (312)
Q Consensus 21 h~~~v~~~~~s~~~-~~l~t~~~d~~i~vw~~~~~-~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 84 (312)
-...|+|++|-|-+ ..|+.|... -|.+|..... . .+.+..+| ..|+++.|.+||..+++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred hhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence 35679999999954 467777664 5899975421 1 11222344 57999999999999998875
Q ss_pred CCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEE
Q 021459 85 DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI 164 (312)
Q Consensus 85 d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
|..|.+||+.++...... ....+.+.-+.|+||+.+++++.-|+..++|+............-...|....|+|+|+++
T Consensus 217 sssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred cceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEE
Confidence 578999999875432222 2234567789999999999999999999999655443322222334589999999999876
Q ss_pred EE-eeCCCeEEE--EeCCCCcee-----e--Ecc---------cC---CCCcEEEEEECCCCCEEEEEecCC--------
Q 021459 165 VS-GSHDGTCKI--WDAGEGACL-----K--TLI---------DD---KDPAVSFAKFSPNGKFILVGTLDS-------- 214 (312)
Q Consensus 165 ~~-~~~d~~i~i--wd~~~~~~~-----~--~~~---------~~---~~~~~~~~~~~~~~~~l~~~~~d~-------- 214 (312)
+- ++..-.+.- ++-+..... + .+. .. -.+....++|+|.|.+|++.-..+
T Consensus 296 Lf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~ 375 (445)
T KOG2139|consen 296 LFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKL 375 (445)
T ss_pred EEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhh
Confidence 54 333322221 111111000 0 000 00 023456788999999999875433
Q ss_pred eEEEEEcCCCcEEEEE-EccC--CceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459 215 TLKLWNYSAGKFLKIY-TGHT--NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266 (312)
Q Consensus 215 ~i~v~d~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 266 (312)
.|.+||.+..-.+... -+.. .....+...+...++.+|..+=..|.+.-|++
T Consensus 376 ~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 376 HISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 3566776544332221 1111 11233444445566778888888888887776
No 236
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=6.8e-12 Score=108.62 Aligned_cols=234 Identities=13% Similarity=0.150 Sum_probs=144.6
Q ss_pred eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCE
Q 021459 45 TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL 121 (312)
Q Consensus 45 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 121 (312)
.|.++|...... ..+..+...+...+|+|||+.|+..+.+ ..|.+||+.++.. +.+....+.+...+|+||++.
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence 466777765443 4455567788999999999988776543 3688899876532 222223334556899999998
Q ss_pred EE-EeecCC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-CC--eEEEEeCCCCceeeEcccCCCCcE
Q 021459 122 IV-SGSFDE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DG--TCKIWDAGEGACLKTLIDDKDPAV 195 (312)
Q Consensus 122 l~-s~~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~ 195 (312)
++ +.+.+| .|++||+.+++... +..+........|+|||+.++..+. ++ .|.++|+.+++... +... ....
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~-~~~~ 333 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV-GNYN 333 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecC-CCCc
Confidence 76 444454 58888998876543 3334444566789999998776553 33 57777877665432 2111 1222
Q ss_pred EEEEECCCCCEEEEEecC-C--eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC---CeEEEEECCch
Q 021459 196 SFAKFSPNGKFILVGTLD-S--TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED---NCVYVWDLQQK 269 (312)
Q Consensus 196 ~~~~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~ 269 (312)
....|+|+|++++....+ + .|.++|+.+++.......... .... +.++|+.++..+.+ ..|.+.++...
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~----~~p~-~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLD----ESPS-VAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCC----CCce-ECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 345799999999887643 2 588899887764332221111 1112 34678877665433 34666777433
Q ss_pred heeecccCCccceEEEEEcCC
Q 021459 270 TMIQKLDGHTDSVISVTCHPT 290 (312)
Q Consensus 270 ~~~~~~~~h~~~v~~l~~~p~ 290 (312)
....+..+.+.+...+|+|-
T Consensus 409 -~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 409 -VRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred -ceEECcCCCCCcCCCccCCC
Confidence 33344444556667777764
No 237
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.57 E-value=5.2e-13 Score=104.62 Aligned_cols=212 Identities=17% Similarity=0.239 Sum_probs=148.3
Q ss_pred eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEe-CCCcceEEEee-eccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWS-ASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDDRTLRI 90 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 90 (312)
..++.++||.+.|+....-|..+-+++.+.|.++|||- ...++....+. .-+.+++++.+.++...|+.|-..|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 45667899999999999999888999999999999994 33344332222 23567889999999999999999999988
Q ss_pred EeCCCCc---eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEc-------------------------------
Q 021459 91 WDARTPF---DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEV------------------------------- 136 (312)
Q Consensus 91 wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~------------------------------- 136 (312)
+.+.... ..++....|...+..+-|+...+.+++.+.|..+.---.
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~ 174 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHS 174 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccc
Confidence 8654321 123444557777777777666666666665543321111
Q ss_pred ----------CCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCE
Q 021459 137 ----------KTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKF 206 (312)
Q Consensus 137 ----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (312)
..-..+..+.+|...+.+++|.|....+.+|..|..+.+||+.-.+-..-....+...+..+..-+--+.
T Consensus 175 gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~ 254 (404)
T KOG1409|consen 175 GQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQ 254 (404)
T ss_pred cceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhee
Confidence 1112334567788899999999999999999999999999997654332222222233444444455568
Q ss_pred EEEEecCCeEEEEEcCCC
Q 021459 207 ILVGTLDSTLKLWNYSAG 224 (312)
Q Consensus 207 l~~~~~d~~i~v~d~~~~ 224 (312)
+.+++.||.|-+||....
T Consensus 255 l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 255 LISCGEDGGIVVWNMNVK 272 (404)
T ss_pred eeeccCCCeEEEEeccce
Confidence 889999999999998654
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.56 E-value=7.6e-12 Score=108.08 Aligned_cols=212 Identities=17% Similarity=0.178 Sum_probs=134.6
Q ss_pred CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCCCceeeeeeecccccEEEEEEecCCC
Q 021459 44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN 120 (312)
Q Consensus 44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 120 (312)
..|.++|...... ..+..+...+.+.+|+|+|++|+.+..+ ..|++||+.++.. ..+..+.+.+.+++|+||++
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 3577777754433 4455566678899999999999877644 4799999987532 22333445567789999998
Q ss_pred EEE-EeecCC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-CC--eEEEEeCCCCceeeEcccCCCCc
Q 021459 121 LIV-SGSFDE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DG--TCKIWDAGEGACLKTLIDDKDPA 194 (312)
Q Consensus 121 ~l~-s~~~dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~ 194 (312)
.|+ +.+.++ .|++||+.+++... +..+........|+|+++.++..+. ++ .|.++|+.+++.. .+.. ....
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~-~~~~ 323 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF-RGGY 323 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec-CCCC
Confidence 765 444444 58889988776433 3334444456789999998876554 33 5777887766533 2221 2223
Q ss_pred EEEEEECCCCCEEEEEecCC---eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC---eEEEEEC
Q 021459 195 VSFAKFSPNGKFILVGTLDS---TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN---CVYVWDL 266 (312)
Q Consensus 195 ~~~~~~~~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~iwd~ 266 (312)
.....|+|+|++++..+.++ .|.++|+.++... .+...... .. ....++++.|+..+.++ .+.+.+.
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~---~~-p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLD---ES-PSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCC---CC-ceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 44567999999999887775 7889998775543 22221111 11 12346777777665543 3555554
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.56 E-value=4.4e-10 Score=94.22 Aligned_cols=266 Identities=16% Similarity=0.266 Sum_probs=164.1
Q ss_pred CeEEEEeC--CCcceEEEe-eeccCCEEEEEEccCCCeEEEEcC----CCeEEEEeCCCC---ceeeeeeecccccEEEE
Q 021459 44 KTVIIWSA--SSLALVHRF-VGHSEGISDLAWSSDSHYICSASD----DRTLRIWDARTP---FDCLKTLRGHSDFVFCV 113 (312)
Q Consensus 44 ~~i~vw~~--~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~wd~~~~---~~~~~~~~~~~~~v~~~ 113 (312)
+.|.+|.+ .++++...- ..-......++++|++++|.+... ++.|..|++... ...+.........-..+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 68888876 444432111 123455677999999999998866 568888887653 12222222122344568
Q ss_pred EEecCCCEEEEeec-CCcEEEEEcCC-CeEEEEe--ee-----------cCcCeEEEEEccCCCEEEEee-CCCeEEEEe
Q 021459 114 NFNPQSNLIVSGSF-DESIRIWEVKT-GKCTRVI--RA-----------HSMPVTSVHFNRDGSLIVSGS-HDGTCKIWD 177 (312)
Q Consensus 114 ~~~~~~~~l~s~~~-dg~i~~wd~~~-~~~~~~~--~~-----------~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd 177 (312)
+++|++++++++.. +|.|.++++.. +...... .. ......++.++|+++++++.. ....|.+|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 89999999988875 78999999976 4333221 11 112357899999999887754 345789998
Q ss_pred CCCCc--ee--eEcccCCCCcEEEEEECCCCCEEEEE-ecCCeEEEEEcC--CCcE--EEEEEcc----CCceeEEEEEE
Q 021459 178 AGEGA--CL--KTLIDDKDPAVSFAKFSPNGKFILVG-TLDSTLKLWNYS--AGKF--LKIYTGH----TNKKYCITSTF 244 (312)
Q Consensus 178 ~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~v~d~~--~~~~--~~~~~~~----~~~~~~~~~~~ 244 (312)
+.... .. ..+.......-..+.|+|+++++.+. -.++.|.+|++. ++.. +...... ......-...
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~- 251 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA- 251 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE-
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE-
Confidence 87654 21 22222344556778899999988665 457889999988 4432 2222211 1111222333
Q ss_pred EccCCcEEEE-eecCCeEEEEECCc--h--heeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 245 SVTNGKYIVS-GSEDNCVYVWDLQQ--K--TMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 245 ~~~~~~~l~~-~~~dg~i~iwd~~~--~--~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
..+++++|.+ ....+.|.+|++.. + +.+..+.......+.++++|++++|+++..++ .+|.+|++|
T Consensus 252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-~~v~vf~~d 322 (345)
T PF10282_consen 252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS-NTVSVFDID 322 (345)
T ss_dssp E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT-TEEEEEEEE
T ss_pred EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC-CeEEEEEEe
Confidence 3477887655 45678999999932 2 22333333344579999999999999887654 578888775
No 240
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=2.1e-13 Score=120.64 Aligned_cols=192 Identities=20% Similarity=0.309 Sum_probs=151.8
Q ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCE----EEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee
Q 021459 28 VKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGI----SDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL 103 (312)
Q Consensus 28 ~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~ 103 (312)
-.+.-+...++.+..+..+.+|+...+..+.++.+..... .-+.++++.-++++|+.-+.|.+|+....... ..+
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p-~~l 171 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP-IRL 171 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc-cee
Confidence 3444566778888888999999988877666554322211 12234566678999999999999997643332 267
Q ss_pred ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE-EeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCc
Q 021459 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR-VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182 (312)
Q Consensus 104 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (312)
.+|.+.++++.++.||.++++.|.|.++++|++.+.+... ..-+|...+..+.+.|+ .+++++.|.+.++|+... .
T Consensus 172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~-~ 248 (967)
T KOG0974|consen 172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG-T 248 (967)
T ss_pred cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc-c
Confidence 8999999999999999999999999999999999887665 55679999999999998 899999999999996543 3
Q ss_pred eeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 223 (312)
.+..+..+....+..+..+++...+++++.|+.+++||+..
T Consensus 249 ~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 249 QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 33355556666788888999999999999999999998743
No 241
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=9.4e-12 Score=107.63 Aligned_cols=234 Identities=15% Similarity=0.184 Sum_probs=141.3
Q ss_pred eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCE
Q 021459 45 TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNL 121 (312)
Q Consensus 45 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 121 (312)
.+.++|....+. ..+..+...+.+..|+|||+.|+..+.+ ..|.+||+.++... .+....+......|+||++.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--KVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--EecCCCCCcCCeeECCCCCE
Confidence 566667655443 3344566778899999999988876543 25888898765321 12222233446889999997
Q ss_pred EEE-eecCCc--EEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-CC--eEEEEeCCCCceeeEcccCCCCcE
Q 021459 122 IVS-GSFDES--IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-DG--TCKIWDAGEGACLKTLIDDKDPAV 195 (312)
Q Consensus 122 l~s-~~~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~ 195 (312)
|+. .+.+|. |+++|+.+++... +..+........|+|||+.++..+. ++ .|.++|+.+++... +... ....
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~-g~~~ 352 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFE-GEQN 352 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecC-CCCC
Confidence 764 455664 7788888776433 3334445567899999998776553 33 46667777665432 2111 1112
Q ss_pred EEEEECCCCCEEEEEecC-C--eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEee-cCC--eEEEEECCch
Q 021459 196 SFAKFSPNGKFILVGTLD-S--TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS-EDN--CVYVWDLQQK 269 (312)
Q Consensus 196 ~~~~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg--~i~iwd~~~~ 269 (312)
....|+|+|++|+..+.+ + .|.++|+.+++... +...... .... +.++++.|+..+ .+| .+.+++.. +
T Consensus 353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d---~~ps-~spdG~~I~~~~~~~g~~~l~~~~~~-G 426 (448)
T PRK04792 353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRLD---ESPS-VAPNGTMVIYSTTYQGKQVLAAVSID-G 426 (448)
T ss_pred cCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCCC---CCce-ECCCCCEEEEEEecCCceEEEEEECC-C
Confidence 235799999998886553 3 46667877776432 2221111 1112 346777765544 334 36677763 4
Q ss_pred heeecccCCccceEEEEEcCC
Q 021459 270 TMIQKLDGHTDSVISVTCHPT 290 (312)
Q Consensus 270 ~~~~~~~~h~~~v~~l~~~p~ 290 (312)
.....+..+.+.+...+|+|-
T Consensus 427 ~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 427 RFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CceEECcCCCCCcCCCccCCC
Confidence 455556555566777788873
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.55 E-value=4.7e-12 Score=109.39 Aligned_cols=198 Identities=20% Similarity=0.229 Sum_probs=133.4
Q ss_pred eeecccccceEEEEECCCCCEEEEEeCC---CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEE-EcCCC--eEE
Q 021459 16 KTLTAHSRAVSCVKFSNDGTLLASASLD---KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICS-ASDDR--TLR 89 (312)
Q Consensus 16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~--~v~ 89 (312)
+.+..+...+...+|+|||++|+.+..+ ..|++|++.+++.. .+..+...+..++|+|+++.|+. .+.++ .|+
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~ 261 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIY 261 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCccEE
Confidence 3455566778899999999999887643 47999999887543 23345556677999999987764 44444 588
Q ss_pred EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459 90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS 166 (312)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
+||+.++. ...+..+........|+|+++.++..+. ++ .|+++|+.+++.. .+..+........|+|++++++.
T Consensus 262 ~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 262 VMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAF 338 (417)
T ss_pred EEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEE
Confidence 88887643 2333334444556789999998876554 33 5778888776543 33334455677899999999988
Q ss_pred eeCCC---eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC---eEEEEE
Q 021459 167 GSHDG---TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS---TLKLWN 220 (312)
Q Consensus 167 ~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~v~d 220 (312)
++.++ .|.+||+.++... .+.. . .......|+|+++.|+..+.++ .+++.+
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~~-~l~~-~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~ 395 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGER-VLTD-T-GLDESPSFAPNGRMILYATTRGGRGVLGLVS 395 (417)
T ss_pred EEccCCceEEEEEeCCCCCeE-EccC-C-CCCCCceECCCCCEEEEEEeCCCcEEEEEEE
Confidence 87775 7889998875432 2221 1 1123346999999888876654 344444
No 243
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.6e-13 Score=112.01 Aligned_cols=252 Identities=20% Similarity=0.316 Sum_probs=174.6
Q ss_pred eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCC--CEEEEeecCCcEEE
Q 021459 56 LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS--NLIVSGSFDESIRI 133 (312)
Q Consensus 56 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~s~~~dg~i~~ 133 (312)
+..++..|.+.|..+.|+..|..|+++++|..|.+||.......+....+|...|....|-|.. ..+++++.||.|++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 3456788999999999999999999999999999999877666666677899999999998853 57899999999998
Q ss_pred EEcC-CCeE--EEEeeecCcCeEEEEEccCC-CEEEEeeCCCeEEEEeCCCCceeeEcc--cCCCC---cEEEEEECCCC
Q 021459 134 WEVK-TGKC--TRVIRAHSMPVTSVHFNRDG-SLIVSGSHDGTCKIWDAGEGACLKTLI--DDKDP---AVSFAKFSPNG 204 (312)
Q Consensus 134 wd~~-~~~~--~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~---~~~~~~~~~~~ 204 (312)
=.+. ++.+ ...+..|..+|..++..|+. ..|.+++.|+.+.-+|++.+.....+. ..+.. ....++..|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 7663 3333 23455688999999998865 468899999999999998765432221 11112 23445677755
Q ss_pred C-EEEEEecCCeEEEEEcCCCcE------EEEEEccC---CceeEEEEE-EEccCCcEEEEeecCCeEEEEECCch----
Q 021459 205 K-FILVGTLDSTLKLWNYSAGKF------LKIYTGHT---NKKYCITST-FSVTNGKYIVSGSEDNCVYVWDLQQK---- 269 (312)
Q Consensus 205 ~-~l~~~~~d~~i~v~d~~~~~~------~~~~~~~~---~~~~~~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~---- 269 (312)
. .+++++.|..+++||.+.-.. +..+..+. .....|+.. +....+++|++- .|-.|+++.-..+
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY-nDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY-NDEDIYLFNKSMGDGSE 372 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee-cccceEEeccccccCCC
Confidence 4 889999999999999764321 12221111 111223333 333445666655 4556888854321
Q ss_pred --------heeec-ccCCc--cceEEEEE-cCCCceEEEeeecCCeeEEEEee
Q 021459 270 --------TMIQK-LDGHT--DSVISVTC-HPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 270 --------~~~~~-~~~h~--~~v~~l~~-~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
..+.. ++||. ..|..+-| -|...++++||. -+.|.||+-
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD--CGhIFiW~K 423 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD--CGHIFIWDK 423 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCc--cceEEEEec
Confidence 12233 67885 35777765 577788888874 369999985
No 244
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=4.1e-11 Score=99.85 Aligned_cols=273 Identities=14% Similarity=0.244 Sum_probs=165.1
Q ss_pred cceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-----cC-----CCeEEEEe
Q 021459 23 RAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-----SD-----DRTLRIWD 92 (312)
Q Consensus 23 ~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----d~~v~~wd 92 (312)
.+++..++|++|+++|.+ .++.++|++..+...+..... ..++++.|+|.+.+|.+= -. .-.+.+|+
T Consensus 35 ~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 346777889999988876 456899999888764444333 278899999999998752 11 23577999
Q ss_pred CCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCC--EEEE----
Q 021459 93 ARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGS--LIVS---- 166 (312)
Q Consensus 93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~---- 166 (312)
+.+. .....+......-++..|++|..+.+ --..+.+++|++.+-+.+. -+.|...+..+.++|.+. .+++
T Consensus 112 vet~-~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 112 VETG-VQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eccc-eehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccC
Confidence 8873 22222221111225777877754322 1223468888876533221 122344455555555421 1111
Q ss_pred -eeCCCeEEEEe---------------------------------------------------------CCCCceeeEcc
Q 021459 167 -GSHDGTCKIWD---------------------------------------------------------AGEGACLKTLI 188 (312)
Q Consensus 167 -~~~d~~i~iwd---------------------------------------------------------~~~~~~~~~~~ 188 (312)
.+.-+.+++|- +....+...
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~-- 266 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVP-- 266 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEe--
Confidence 12222344432 221111111
Q ss_pred cCCCCcEEEEEECCCCCEEEEE--ecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEee---cCCeEEE
Q 021459 189 DDKDPAVSFAKFSPNGKFILVG--TLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGS---EDNCVYV 263 (312)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~l~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i 263 (312)
....+.+..+.|+|+++.+++. -.-..+.|||++. ..+..+. .+..++ .++.+.|++++.++ --|.|.+
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~--egpRN~---~~fnp~g~ii~lAGFGNL~G~mEv 340 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFP--EGPRNT---AFFNPHGNIILLAGFGNLPGDMEV 340 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCC--CCCccc---eEECCCCCEEEEeecCCCCCceEE
Confidence 1234567788899999876664 4456889999854 4443332 222222 35557888887655 4589999
Q ss_pred EECCchheeecccCCccceEEEEEcCCCceEEEeeec----CCeeEEEEeec
Q 021459 264 WDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLD----GDRTVRVWVQD 311 (312)
Q Consensus 264 wd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~d----gd~~v~iw~~~ 311 (312)
||..+.+++..+..-. -.-..|+|+|++++|++.. -|+.++||+++
T Consensus 341 wDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 341 WDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred EeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 9999988888776533 3566899999999998754 24678999974
No 245
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=6.1e-10 Score=93.35 Aligned_cols=241 Identities=16% Similarity=0.281 Sum_probs=151.0
Q ss_pred ceEEEEECCCCCEEEEEeC----CCeEEEEeCCCc--c--eEEEeeeccCCEEEEEEccCCCeEEEEc-CCCeEEEEeCC
Q 021459 24 AVSCVKFSNDGTLLASASL----DKTVIIWSASSL--A--LVHRFVGHSEGISDLAWSSDSHYICSAS-DDRTLRIWDAR 94 (312)
Q Consensus 24 ~v~~~~~s~~~~~l~t~~~----d~~i~vw~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~~wd~~ 94 (312)
.-+-++++|++++|.+... ++.|..|.+... + .+............++++|++++|+++. .+|.+.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 3456889999999988866 578888876643 2 3344443445667899999999999886 48899999987
Q ss_pred CCceeee---eee----------cccccEEEEEEecCCCEEEEeec-CCcEEEEEcCCCe--EEE--Eee-ecCcCeEEE
Q 021459 95 TPFDCLK---TLR----------GHSDFVFCVNFNPQSNLIVSGSF-DESIRIWEVKTGK--CTR--VIR-AHSMPVTSV 155 (312)
Q Consensus 95 ~~~~~~~---~~~----------~~~~~v~~~~~~~~~~~l~s~~~-dg~i~~wd~~~~~--~~~--~~~-~~~~~v~~~ 155 (312)
....... ... .......++.++|+++++++... ...|.+|++.... ... .+. ......+.+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~ 197 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHL 197 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEE
Confidence 6322211 111 11234678999999998887654 3579999987654 221 222 233456899
Q ss_pred EEccCCCEEEEe-eCCCeEEEEeCC--CCce--eeEcc---cC--CCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcC--
Q 021459 156 HFNRDGSLIVSG-SHDGTCKIWDAG--EGAC--LKTLI---DD--KDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYS-- 222 (312)
Q Consensus 156 ~~~~~~~~l~~~-~~d~~i~iwd~~--~~~~--~~~~~---~~--~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~-- 222 (312)
.|+|+++++.+. ..++.|.++++. ++.. ...+. .. .......+.++|||++|.++. .++.|.+|++.
T Consensus 198 ~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 198 AFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred EEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence 999999987654 457789999887 3322 11111 11 112466778999999988875 56789999983
Q ss_pred CCcEE--EEEEccCCceeEEEEEEEccCCcEEEEee-cCCeEEEEECC
Q 021459 223 AGKFL--KIYTGHTNKKYCITSTFSVTNGKYIVSGS-EDNCVYVWDLQ 267 (312)
Q Consensus 223 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~ 267 (312)
+++.. ..+...... .-.+.+ .+++++|+++. .++.|.+|++.
T Consensus 278 ~g~l~~~~~~~~~G~~--Pr~~~~-s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKF--PRHFAF-SPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TTTEEEEEEEEESSSS--EEEEEE--TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCceEEEEEEeCCCCC--ccEEEE-eCCCCEEEEEecCCCeEEEEEEe
Confidence 34432 222222221 222333 36788777655 77899999763
No 246
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=1.1e-13 Score=115.13 Aligned_cols=277 Identities=17% Similarity=0.308 Sum_probs=187.5
Q ss_pred eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC-------cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS-------LALVHRFVGHSEGISDLAWSSDSHYICSASDDRT 87 (312)
Q Consensus 15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 87 (312)
...+.+|...|..++--.+.+.+++++.|+++++|.+.. ..+...+..|+.+|.++.|-.+-++++++ |+-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 456789999999987767778899999999999998763 23567788999999999999998888875 889
Q ss_pred EEEEeCCCCceeeeee----ecccccEEEEEEecCCCEEEEe-ecCCcEEEEEcCCCeEEEEeeec-----CcCeEEEEE
Q 021459 88 LRIWDARTPFDCLKTL----RGHSDFVFCVNFNPQSNLIVSG-SFDESIRIWEVKTGKCTRVIRAH-----SMPVTSVHF 157 (312)
Q Consensus 88 v~~wd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~~wd~~~~~~~~~~~~~-----~~~v~~~~~ 157 (312)
+.+||.--+....+.. .+..+.|.|+. +-+...++++ +...+|+++|.+.+.-...++.- ...+++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 9999975432211111 12234455543 2244455544 78899999999988766555432 345789999
Q ss_pred ccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEE-EEcCCCcEEEEEEccCCc
Q 021459 158 NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKL-WNYSAGKFLKIYTGHTNK 236 (312)
Q Consensus 158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v-~d~~~~~~~~~~~~~~~~ 236 (312)
.+.|+.++++-.+|.|.+.|.++|..+.......-..... -.|..+.|+....|..+.+ |...++.........+.+
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllql--aapsdq~L~~saldHslaVnWhaldgimh~q~kpppep 962 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQL--AAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEP 962 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhh--cCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcc
Confidence 9999999999999999999999998776543322111211 2455667777788889988 887666544333322222
Q ss_pred eeEEEEEEEccCCcEEEEeecCCeEEEEECCch----heeeccc--CCccceEEEEEcCCCceEEEeeecC
Q 021459 237 KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK----TMIQKLD--GHTDSVISVTCHPTENKIASAGLDG 301 (312)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~--~h~~~v~~l~~~p~~~~l~~~~~dg 301 (312)
.. +...-|.-|+++.....+.+|--... ..+.+++ ...+..++++.-|-+..++.|...|
T Consensus 963 ah-----flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G 1028 (1034)
T KOG4190|consen 963 AH-----FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHG 1028 (1034)
T ss_pred hh-----hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCC
Confidence 11 11123556788877788888843211 1122222 2345677888888888777777554
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2e-11 Score=104.87 Aligned_cols=210 Identities=15% Similarity=0.096 Sum_probs=127.3
Q ss_pred ecccccceEEEEECCCCCEE---EEEeCCC--eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC-CC----e
Q 021459 18 LTAHSRAVSCVKFSNDGTLL---ASASLDK--TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD-DR----T 87 (312)
Q Consensus 18 ~~~h~~~v~~~~~s~~~~~l---~t~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~ 87 (312)
+......+..-+|||||+.+ ++...+| .|.+.++.+++.. .+..........+|+|||+.|+..+. +| .
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 34445566778999999752 3444444 4566677766542 33334445567899999998876543 23 3
Q ss_pred EEEEeCCCC--ceeeeeeecccccEEEEEEecCCCEEEEee-cCCcEEEE--EcCC-CeEEEEeeecCcCeEEEEEccCC
Q 021459 88 LRIWDARTP--FDCLKTLRGHSDFVFCVNFNPQSNLIVSGS-FDESIRIW--EVKT-GKCTRVIRAHSMPVTSVHFNRDG 161 (312)
Q Consensus 88 v~~wd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~~w--d~~~-~~~~~~~~~~~~~v~~~~~~~~~ 161 (312)
+..|++..+ ........+..+.....+|+|||+.|+..+ .+|...+| ++.. +.....+..+...+....|+|||
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 344665532 111222222223345679999999777655 45655555 4432 22233344444456788999999
Q ss_pred CEEEEeeCC---CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec---CCeEEEEEcCCCcEEEEE
Q 021459 162 SLIVSGSHD---GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL---DSTLKLWNYSAGKFLKIY 230 (312)
Q Consensus 162 ~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~ 230 (312)
+.++..+.+ ..|.+||+.+++... +... ........|+|||+.|+.... ...|+++|+..++.....
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence 988866543 368999998776532 3222 223455779999998876543 356888888777654443
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.1e-11 Score=105.59 Aligned_cols=199 Identities=18% Similarity=0.208 Sum_probs=129.4
Q ss_pred eecccccceEEEEECCCCCEEEEEeCC---CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCC--eEEE
Q 021459 17 TLTAHSRAVSCVKFSNDGTLLASASLD---KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDR--TLRI 90 (312)
Q Consensus 17 ~~~~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~v~~ 90 (312)
.+..+...+...+|+|||+.|+..+.+ ..|.+|++.+++... +....+.+...+|+|||+.|+ +.+.++ .|++
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 455677788999999999998776543 368889998776532 333334455789999999876 444454 5788
Q ss_pred EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe
Q 021459 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG 167 (312)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
||+.++. ...+..+........|+||++.++..+. +| .|+++|+.+++..... ..........|+|+|+.++..
T Consensus 272 ~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 272 MDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred EECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEE
Confidence 8987643 2334444445566789999998766553 33 5777788777643322 122223456899999998876
Q ss_pred eCC-C--eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecC---CeEEEEEcC
Q 021459 168 SHD-G--TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD---STLKLWNYS 222 (312)
Q Consensus 168 ~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~v~d~~ 222 (312)
+.+ + .|.++|+.+++. +.+... .. .....|+|+|+.++..+.+ ..+.+.+..
T Consensus 349 ~~~~~~~~l~~~dl~tg~~-~~lt~~-~~-~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSV-RILTDT-SL-DESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EccCCceEEEEEECCCCCE-EEccCC-CC-CCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 643 3 477889887653 222221 11 1234699999999887654 346666664
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.7e-11 Score=104.77 Aligned_cols=205 Identities=17% Similarity=0.191 Sum_probs=126.5
Q ss_pred ecccccceEEEEECCCCCEEEEEeC-CC--eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEE-EcCCCe--EEEE
Q 021459 18 LTAHSRAVSCVKFSNDGTLLASASL-DK--TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICS-ASDDRT--LRIW 91 (312)
Q Consensus 18 ~~~h~~~v~~~~~s~~~~~l~t~~~-d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~--v~~w 91 (312)
+..+...+...+|+|||+.|+..+. ++ .|.+||+.+++... +..........+|+|||+.|+. .+.++. |+++
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 3445567788999999998887643 33 57888888766422 2222333457899999997765 455664 7777
Q ss_pred eCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee
Q 021459 92 DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS 168 (312)
Q Consensus 92 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
|+.++. ...+..+.......+|+||++.++..+. ++ .|+++|+.+++..... ..........|+|||++++..+
T Consensus 292 dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 292 DIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred ECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEEEEE
Confidence 877642 3334444445667899999998766543 34 4666788777644322 2222234568999999887765
Q ss_pred CC-C--eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecC-C--eEEEEEcCCCcEEEEE
Q 021459 169 HD-G--TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD-S--TLKLWNYSAGKFLKIY 230 (312)
Q Consensus 169 ~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~ 230 (312)
.+ + .|.++|+.++... .+... . ......|+|+|+.|+..+.+ + .+++++. ++.....+
T Consensus 369 ~~~g~~~I~~~dl~~g~~~-~lt~~-~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l 432 (448)
T PRK04792 369 RTNGKFNIARQDLETGAMQ-VLTST-R-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARL 432 (448)
T ss_pred ecCCceEEEEEECCCCCeE-EccCC-C-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence 43 3 4555787776532 22211 1 11123699999988876543 2 3666776 34443333
No 250
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=6.6e-13 Score=123.42 Aligned_cols=196 Identities=14% Similarity=0.251 Sum_probs=152.6
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeee-ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG-HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC 99 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~ 99 (312)
|-..|.++.=+|...+-+||+.||.+++|....++.+..++. -+..|+.+.|+.+|+.+..+..||.+.+|... .+.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~--pk~ 2284 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS--PKP 2284 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--Ccc
Confidence 445666777778888899999999999999888877655542 23788999999999999999999999999886 244
Q ss_pred eeeeecccccEEEEEEecCCCEEEEee---cCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEE
Q 021459 100 LKTLRGHSDFVFCVNFNPQSNLIVSGS---FDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKI 175 (312)
Q Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~---~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (312)
....+.|+.......|-. ..+++++ .++.+.+||..-. ..-.+-..|...++++++.|..++|++|+.+|.|++
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l 2362 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCL 2362 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEE
Confidence 556677887777777765 4566654 4578999997422 111222789999999999999999999999999999
Q ss_pred EeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459 176 WDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT 231 (312)
Q Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 231 (312)
||++..+..+.+.. ++ ...++++|+..|.++||++..-..++.+.
T Consensus 2363 ~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred eehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 99998776655432 33 45689999999999999998766555443
No 251
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.1e-10 Score=100.17 Aligned_cols=239 Identities=15% Similarity=0.143 Sum_probs=135.7
Q ss_pred CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeE---EEEcCCC--eEEEEeCCCCceeeeeeecccccEEEEEEecC
Q 021459 44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYI---CSASDDR--TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ 118 (312)
Q Consensus 44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~d~--~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 118 (312)
..|.+.|....+.. .+......+.+-+|+|||+.+ ++...++ .|.+.++..+.. ..+....+.....+|+||
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCC
Confidence 35666676655443 333345566788999999742 2443343 577778766432 222223334556899999
Q ss_pred CCEEEEeec-CC----cEEEEEcCCC---eEEEEeeecCcCeEEEEEccCCCEEEEee-CCCeEEEE--eCCC-CceeeE
Q 021459 119 SNLIVSGSF-DE----SIRIWEVKTG---KCTRVIRAHSMPVTSVHFNRDGSLIVSGS-HDGTCKIW--DAGE-GACLKT 186 (312)
Q Consensus 119 ~~~l~s~~~-dg----~i~~wd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw--d~~~-~~~~~~ 186 (312)
|+.|+..+. +| .+..|++..+ +................|+|||+.|+..+ .+|...+| ++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 988776543 23 2344676653 32223222222345679999999877655 45655555 4432 222222
Q ss_pred cccCCCCcEEEEEECCCCCEEEEEecC---CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe-e--cCCe
Q 021459 187 LIDDKDPAVSFAKFSPNGKFILVGTLD---STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG-S--EDNC 260 (312)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~dg~ 260 (312)
+.. .........|+|||+.|+..+.+ ..|.+||+.+++....... ... .....+.++++.|+.. . ....
T Consensus 322 lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~---~~~p~wSpDG~~L~f~~~~~g~~~ 396 (428)
T PRK01029 322 LTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PEN---KESPSWAIDSLHLVYSAGNSNESE 396 (428)
T ss_pred ecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCC---ccceEECCCCCEEEEEECCCCCce
Confidence 222 22234456799999998876543 4799999988876443322 111 1112234678777643 2 2356
Q ss_pred EEEEECCchheeecccCCccceEEEEEcCCC
Q 021459 261 VYVWDLQQKTMIQKLDGHTDSVISVTCHPTE 291 (312)
Q Consensus 261 i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~ 291 (312)
|.++|+..++... +....+.+...+|+|..
T Consensus 397 L~~vdl~~g~~~~-Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 397 LYLISLITKKTRK-IVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEEECCCCCEEE-eecCCCcccCceecCCC
Confidence 8888987665433 32234456677888753
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.44 E-value=2e-12 Score=114.57 Aligned_cols=148 Identities=30% Similarity=0.407 Sum_probs=126.1
Q ss_pred EECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccc
Q 021459 29 KFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSD 108 (312)
Q Consensus 29 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~ 108 (312)
.++++.-++++|+.-+.|.+|.....+.-.++.+|.+.|.++.|+.||++++++|+|+++++|++++.........+|+.
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsa 219 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSA 219 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccc
Confidence 45677778999999999999988744444478999999999999999999999999999999999986554446678999
Q ss_pred cEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCc-CeEEEEEccCCCEEEEeeCCCeEEEEeCC
Q 021459 109 FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM-PVTSVHFNRDGSLIVSGSHDGTCKIWDAG 179 (312)
Q Consensus 109 ~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (312)
.++.++|.|. .+++++.|-+.++|+.+ ++.+..+..|.. .+..++..++.-..++++.|+.+++||+.
T Consensus 220 Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 9999999997 99999999999999754 444557777754 58899999988899999999999999864
No 253
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.44 E-value=7.3e-09 Score=85.27 Aligned_cols=255 Identities=12% Similarity=0.183 Sum_probs=147.9
Q ss_pred CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC----------CCeEEEEeCCCCceeeeeeeccc------
Q 021459 44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD----------DRTLRIWDARTPFDCLKTLRGHS------ 107 (312)
Q Consensus 44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~v~~wd~~~~~~~~~~~~~~~------ 107 (312)
+.|.+.|..+++.+..+..-..+ ..+ ++||++.|+++.. +..|.+||..+. +.+..+.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH-LPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC-cEEeEEccCCCchhhc
Confidence 78999999999988877643332 234 9999998877755 689999999885 3343333211
Q ss_pred -ccEEEEEEecCCCEEEEeec--CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC-Cce
Q 021459 108 -DFVFCVNFNPQSNLIVSGSF--DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE-GAC 183 (312)
Q Consensus 108 -~~v~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-~~~ 183 (312)
..-..++++||+++++.... +..|.+.|+.+++.+..+....+ ..-...+++..+ +-+.||......+.+ ++.
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~ 180 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTANDTFF--MHCRDGSLAKVGYGTKGNP 180 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecCCccE--EEeecCceEEEEecCCCce
Confidence 12236788999999887763 68899999999998877654321 112222222211 112333333222111 111
Q ss_pred -eeE--cc-cCCCCcEEEEEECC-CCCEEEEEecCCeEEEEEcCCCc-----EEEEEEcc-------CCceeEEEEEEEc
Q 021459 184 -LKT--LI-DDKDPAVSFAKFSP-NGKFILVGTLDSTLKLWNYSAGK-----FLKIYTGH-------TNKKYCITSTFSV 246 (312)
Q Consensus 184 -~~~--~~-~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~-----~~~~~~~~-------~~~~~~~~~~~~~ 246 (312)
... +. ....+....-.+.+ +|+++.+... |.|.+.|+.... ....+... ...... ..+ .
T Consensus 181 ~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~--ia~-~ 256 (352)
T TIGR02658 181 KIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ--VAY-H 256 (352)
T ss_pred EEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee--EEE-c
Confidence 111 11 11111111112344 7877776665 999999965432 22222111 111111 223 3
Q ss_pred cCCcEEEE-e---------ecCCeEEEEECCchheeecccCCccceEEEEEcCCCc-eEEEeeecCCeeEEEEee
Q 021459 247 TNGKYIVS-G---------SEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTEN-KIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 247 ~~~~~l~~-~---------~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~-~l~~~~~dgd~~v~iw~~ 310 (312)
++++.+.. . ...+.|.++|..+++.+..+.- ...+..++++|+++ .|.+.. ...++|.+.|.
T Consensus 257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn-~~s~~VsViD~ 329 (352)
T TIGR02658 257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALS-TGDKTLYIFDA 329 (352)
T ss_pred CCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeC-CCCCcEEEEEC
Confidence 45555544 3 1225899999999998888763 45789999999998 555444 23456777765
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.43 E-value=5.5e-11 Score=99.62 Aligned_cols=189 Identities=17% Similarity=0.270 Sum_probs=142.1
Q ss_pred cCCCEEEEeecCCcEEEEEcCCCeEEEEeeec---CcCeEEEEE------cc--------------CCCEEEEeeCCCeE
Q 021459 117 PQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH---SMPVTSVHF------NR--------------DGSLIVSGSHDGTC 173 (312)
Q Consensus 117 ~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~---~~~v~~~~~------~~--------------~~~~l~~~~~d~~i 173 (312)
|...+++....||.+++||...++....+... .+...+..| +| +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 33467888899999999999988776655321 122233333 11 33467889999999
Q ss_pred EEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEE
Q 021459 174 KIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYI 252 (312)
Q Consensus 174 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
.+++...++....+. +.+...+..+.++.+-..|.+++.|..+..|+......++.+.........+ ...+++..+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl---~is~D~~~l 159 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL---CISPDGKIL 159 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceE---EEcCCCCEE
Confidence 999999998877776 4566777778788888899999999999999999998888877655443322 233678899
Q ss_pred EEeecCCeEEEEECCchheeecccCCccceEEEEEcCC-----CceEEEeeecCCeeEEEEeec
Q 021459 253 VSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPT-----ENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 253 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~-----~~~l~~~~~dgd~~v~iw~~~ 311 (312)
++++ +.|.+||+++++.+..+.||.++|++++|--. |.+++++ ++.+.-+-+|..+
T Consensus 160 ~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLss-a~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 160 LTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSS-AAAERGITVWVVE 220 (541)
T ss_pred Eecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeec-cccccceeEEEEE
Confidence 8875 58999999999999999999999999999765 5555543 3455667777653
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=1.7e-12 Score=120.79 Aligned_cols=198 Identities=15% Similarity=0.287 Sum_probs=150.8
Q ss_pred ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE
Q 021459 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT 142 (312)
Q Consensus 63 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 142 (312)
+-..|.++.=+|...+.++|+.||.+++|.-..+.....--.+....+..+.|+.+|+.+..+..||.+.+|... .+..
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence 446677777788888999999999999998766544332222333778889999999999999999999999987 4555
Q ss_pred EEeeecCcCeEEEEEccCCCEEEEee---CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEE
Q 021459 143 RVIRAHSMPVTSVHFNRDGSLIVSGS---HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLW 219 (312)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~ 219 (312)
...+.|......+.|-. ..+++++ .++.+.+||..-.....-+...++...+.+++-|..+.|++|+.+|.|++|
T Consensus 2286 ~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2286 TSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLF 2363 (2439)
T ss_pred eccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEe
Confidence 66778888888888865 5566654 467899999754322211224466678888999999999999999999999
Q ss_pred EcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc
Q 021459 220 NYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD 276 (312)
Q Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 276 (312)
|++..+.+..++. + ...+++++|+..|.|+||++.....+..+.
T Consensus 2364 D~rqrql~h~~~~-------~------~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2364 DIRQRQLRHTFQA-------L------DTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ehHHHHHHHHhhh-------h------hhhheeeccCcccceEEEEccccchhhcCc
Confidence 9987766655443 1 135689999999999999998877666554
No 256
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.41 E-value=2.5e-09 Score=99.33 Aligned_cols=282 Identities=13% Similarity=0.175 Sum_probs=173.4
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEE----eCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC-
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIW----SASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART- 95 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~- 95 (312)
..+.|.++.+-++...++.+..+|.|.+. +..... +.....-..+|.+++||||+..|+....++++.+.+-.-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 34679999999999999999999999988 433322 222223457899999999999999998888887753210
Q ss_pred ------------C----------ceee-------e-----------------eeecccccEEEEEEecCCCEEEEeec--
Q 021459 96 ------------P----------FDCL-------K-----------------TLRGHSDFVFCVNFNPQSNLIVSGSF-- 127 (312)
Q Consensus 96 ------------~----------~~~~-------~-----------------~~~~~~~~v~~~~~~~~~~~l~s~~~-- 127 (312)
+ .+.. + .+. .++.-..++|-.||+++++.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 0 0000 0 011 2334467889999999998775
Q ss_pred -C---CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC---CCeEEEEeCCCCceeeEccc---CCCCcEEE
Q 021459 128 -D---ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH---DGTCKIWDAGEGACLKTLID---DKDPAVSF 197 (312)
Q Consensus 128 -d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~---~~~~~~~~ 197 (312)
. ..+++|+-+ |....+.+.-.+--.+++|.|.|+++++... ...|.+|. ++|..-..+.- .....+..
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeE
Confidence 2 468999955 6544433332333457899999999988764 23566665 34433333322 23456788
Q ss_pred EEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc-CCceeEEEEEEEccCCcEEEEeecCCeEEEEEC----------
Q 021459 198 AKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH-TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL---------- 266 (312)
Q Consensus 198 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~---------- 266 (312)
+.|++++..||+...|. |.+|...+....-...-. ..........|.+.+...|...+.+|.+..+++
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~ 388 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS 388 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence 99999999999977554 999988776542111111 111001113344444444555555455544432
Q ss_pred ---------------------Cchhee-----ecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 267 ---------------------QQKTMI-----QKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 267 ---------------------~~~~~~-----~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
+..... ..+ ....+|.+++|++++..+++-..|| +|.+|..
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~~~~~avl~~d~--~l~~~~~ 455 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPSNSRFAVLTSDG--SLSIYEW 455 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCCCCeEEEEECCC--CEEEEEe
Confidence 110000 011 1346899999999988888888665 5666553
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.41 E-value=4.3e-10 Score=94.41 Aligned_cols=190 Identities=17% Similarity=0.202 Sum_probs=142.6
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCcceEEEeee---ccCCEEEEEE--------------------ccCCCeEEEEcCCCe
Q 021459 31 SNDGTLLASASLDKTVIIWSASSLALVHRFVG---HSEGISDLAW--------------------SSDSHYICSASDDRT 87 (312)
Q Consensus 31 s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~--------------------~~~~~~l~~~~~d~~ 87 (312)
.|-..++|....||.+|+|+..++++...+.. -.+.-.+..| +.+...++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 34567899999999999999988776554431 1223333433 123345667777899
Q ss_pred EEEEeCCCCceeeeee-ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459 88 LRIWDARTPFDCLKTL-RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS 166 (312)
Q Consensus 88 v~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
|.+|++..+.-..+.. ..|.+.|.++.++.+-..+.+++.|+.+..|+...++.++..+..+..+.+++++||+..+++
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 9999987653222222 468999999999998899999999999999999999999998888888999999999999998
Q ss_pred eeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCC-----CCEEEEE-ecCCeEEEEEcCC
Q 021459 167 GSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN-----GKFILVG-TLDSTLKLWNYSA 223 (312)
Q Consensus 167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~-~~d~~i~v~d~~~ 223 (312)
++. .|++||+.+++.+..+.+ +...+..+.|..+ |.+++++ ..+..+.+|-.+.
T Consensus 162 as~--~ik~~~~~~kevv~~ftg-h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 162 ASR--QIKVLDIETKEVVITFTG-HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccc--eEEEEEccCceEEEEecC-CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 864 899999999998888765 4566777767665 6666654 4455566665443
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.41 E-value=2.4e-11 Score=95.42 Aligned_cols=248 Identities=18% Similarity=0.309 Sum_probs=171.8
Q ss_pred ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee-cccccEEEEEEecCCCEEEEeecCCcEEE
Q 021459 55 ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR-GHSDFVFCVNFNPQSNLIVSGSFDESIRI 133 (312)
Q Consensus 55 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~~ 133 (312)
.++.+++||.+.|+....-|-..-+++.+.|.++++|--++..+.-..+. .-..++.++.+.++...|+.|-..|++.-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 45677889999999888888888899999999999996444322211111 12457889999999999999999999998
Q ss_pred EEcC----CCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEE
Q 021459 134 WEVK----TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV 209 (312)
Q Consensus 134 wd~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 209 (312)
+.+. ....++....|...+..+-|+-..+++++.+.|..+.---.+.+..+......... ....++-. +...
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~--t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPA--SALQFDAL--YAFV 170 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccC--CCCceeeE--EEEe
Confidence 8664 33445566789999999999988899999999987664433333322211100000 00011111 4455
Q ss_pred EecCCeEEEEEcC--CCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch-heeecccCCccceEEEE
Q 021459 210 GTLDSTLKLWNYS--AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK-TMIQKLDGHTDSVISVT 286 (312)
Q Consensus 210 ~~~d~~i~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~ 286 (312)
|...|.|.+-.+. .-..+..+.+|... +.+..+.+....|.+|..|..+.+||+.-+ ....++.+|.+.|..+.
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~---~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~ 247 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGE---VTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS 247 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccc---eEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh
Confidence 6666666554432 33445666677665 444555677889999999999999999644 33456788999999998
Q ss_pred EcCCCceEEEeeecCCeeEEEEeec
Q 021459 287 CHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 287 ~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
.-+.-++|.+++.| +-|.+|+++
T Consensus 248 ~~~~t~~l~S~~ed--g~i~~w~mn 270 (404)
T KOG1409|consen 248 YAQHTRQLISCGED--GGIVVWNMN 270 (404)
T ss_pred hhhhheeeeeccCC--CeEEEEecc
Confidence 88888899998855 478888874
No 259
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.38 E-value=6.2e-11 Score=93.23 Aligned_cols=245 Identities=15% Similarity=0.299 Sum_probs=156.7
Q ss_pred cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce----eeeeeeccc------------ccEEEEEEecCCC--EEEEe
Q 021459 64 SEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD----CLKTLRGHS------------DFVFCVNFNPQSN--LIVSG 125 (312)
Q Consensus 64 ~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~----~~~~~~~~~------------~~v~~~~~~~~~~--~l~s~ 125 (312)
.+-|.++.|...|.+|++|..+|.|.++.-..... ....++.|. ..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 45678999999999999999999999986433221 222233332 3467788887664 56777
Q ss_pred ecCCcEEEEEcCCCeE-----------------------------------EEEe-eecCcCeEEEEEccCCCEEEEeeC
Q 021459 126 SFDESIRIWEVKTGKC-----------------------------------TRVI-RAHSMPVTSVHFNRDGSLIVSGSH 169 (312)
Q Consensus 126 ~~dg~i~~wd~~~~~~-----------------------------------~~~~-~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
..|.+|++|.+..... .+.+ .+|..-|.++.++.|++.++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 8899999998743211 0111 2355568899999999888775 5
Q ss_pred CCeEEEEeCCCCceeeEcc---cC----CCCcEEEEEECCCC-CEEEEEecCCeEEEEEcCCCcE----EEEEEccCCc-
Q 021459 170 DGTCKIWDAGEGACLKTLI---DD----KDPAVSFAKFSPNG-KFILVGTLDSTLKLWNYSAGKF----LKIYTGHTNK- 236 (312)
Q Consensus 170 d~~i~iwd~~~~~~~~~~~---~~----~~~~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~- 236 (312)
|-.|.+|++.-......+. .. -...++.+.|+|.. +.++-.+..|+|++.|++.... .+.+.....+
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 6789999886422211111 11 12346667788854 5777788899999999984321 1112111111
Q ss_pred --------eeEEEEEEEccCCcEEEEeecCCeEEEEECCc-hheeecccCCcc---------------ceEEEEEcCCCc
Q 021459 237 --------KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ-KTMIQKLDGHTD---------------SVISVTCHPTEN 292 (312)
Q Consensus 237 --------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~h~~---------------~v~~l~~~p~~~ 292 (312)
...+.-..+..+|+++++-.. -+|++||++. ..++..++-|.. .=..++|+.++.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 112333334467899887533 6899999953 344444443321 235678899999
Q ss_pred eEEEeeecCCeeEEEEeecC
Q 021459 293 KIASAGLDGDRTVRVWVQDR 312 (312)
Q Consensus 293 ~l~~~~~dgd~~v~iw~~~~ 312 (312)
.++|||+. ..+|+++.+|
T Consensus 343 ~v~TGsy~--n~frvf~~~~ 360 (433)
T KOG1354|consen 343 YVMTGSYN--NVFRVFNLAR 360 (433)
T ss_pred eEeccccc--ceEEEecCCC
Confidence 99999986 4788887654
No 260
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.38 E-value=4.8e-09 Score=86.31 Aligned_cols=174 Identities=16% Similarity=0.227 Sum_probs=128.6
Q ss_pred ECC-CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCC-eEEEEeCCCCceeeeeeeccc
Q 021459 30 FSN-DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDR-TLRIWDARTPFDCLKTLRGHS 107 (312)
Q Consensus 30 ~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~v~~wd~~~~~~~~~~~~~~~ 107 (312)
|++ +|++++..+. |...+.+...+-.+. .+|...|.-..+..+++-++.|..|| .+-++|.+++. .+...+.-
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~l 401 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDL 401 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCc
Confidence 443 6788888877 456665544443322 35777888888888888889999999 89999998753 45556667
Q ss_pred ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC----eEEEEeCCCCce
Q 021459 108 DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG----TCKIWDAGEGAC 183 (312)
Q Consensus 108 ~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~iwd~~~~~~ 183 (312)
+.|.++..+++|++++.+.....|-+.|+.++.....-+....-|+.+.|+|+++++|-+-.+| .|+++|+..++.
T Consensus 402 g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 402 GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 8899999999999999999889999999999987665556667799999999999998765554 689999988765
Q ss_pred eeEcccCCCCcEEEEEECCCCCEEEEE
Q 021459 184 LKTLIDDKDPAVSFAKFSPNGKFILVG 210 (312)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
...... . ..-..-+|+|++++|..-
T Consensus 482 y~vTT~-t-a~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 482 YDVTTP-T-AYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEecCC-c-ccccCcccCCCCcEEEEE
Confidence 442211 1 111223588898877543
No 261
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=1.7e-10 Score=96.54 Aligned_cols=231 Identities=15% Similarity=0.207 Sum_probs=150.7
Q ss_pred EECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccc
Q 021459 29 KFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSD 108 (312)
Q Consensus 29 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~ 108 (312)
-++.|-..++--..|..|.+......-...++. ..-.+++++.-..-|+.++....|+-++++.+ ..+..+....+
T Consensus 101 iLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP---~~GRDm~y~~~scDly~~gsg~evYRlNLEqG-rfL~P~~~~~~ 176 (703)
T KOG2321|consen 101 ILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIP---KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG-RFLNPFETDSG 176 (703)
T ss_pred EeccchhhheEeecCceeeehhhcCeeeeeecC---cCCccccccCCCccEEEeecCcceEEEEcccc-ccccccccccc
Confidence 334454445555566666665332211111111 12235666643333444444556777788765 34555555667
Q ss_pred cEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee------cCc-----CeEEEEEccCCCEEEEeeCCCeEEEEe
Q 021459 109 FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA------HSM-----PVTSVHFNRDGSLIVSGSHDGTCKIWD 177 (312)
Q Consensus 109 ~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~------~~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd 177 (312)
.+.++..++...+|++|+.+|.|.+||.+.......+.. |.. .|+++.|+.+|-.+++|+.+|.+.+||
T Consensus 177 ~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 177 ELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD 256 (703)
T ss_pred cceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence 899999999999999999999999999987665544422 222 389999999999999999999999999
Q ss_pred CCCCceeeEcccCCCCcEEEEEECCC--CCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe
Q 021459 178 AGEGACLKTLIDDKDPAVSFAKFSPN--GKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG 255 (312)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 255 (312)
++..+.+..--......+..+.|.+. ++.++ ......++|||-.+|+....+..... .. ..++ .+++.+++++
T Consensus 257 LRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~-S~Dk~~~kiWd~~~Gk~~asiEpt~~-lN--D~C~-~p~sGm~f~A 331 (703)
T KOG2321|consen 257 LRASKPLLVKDHGYELPIKKLDWQDTDQQNKVV-SMDKRILKIWDECTGKPMASIEPTSD-LN--DFCF-VPGSGMFFTA 331 (703)
T ss_pred cccCCceeecccCCccceeeecccccCCCceEE-ecchHHhhhcccccCCceeeccccCC-cC--ceee-ecCCceEEEe
Confidence 99887665432233344555666554 33444 34456899999999988766554332 11 1223 3567788999
Q ss_pred ecCCeEEEEECCc
Q 021459 256 SEDNCVYVWDLQQ 268 (312)
Q Consensus 256 ~~dg~i~iwd~~~ 268 (312)
.+++.+..|=+..
T Consensus 332 ne~~~m~~yyiP~ 344 (703)
T KOG2321|consen 332 NESSKMHTYYIPS 344 (703)
T ss_pred cCCCcceeEEccc
Confidence 9999988886654
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=1.2e-08 Score=81.25 Aligned_cols=267 Identities=13% Similarity=0.229 Sum_probs=167.5
Q ss_pred CCeEEEEeCCC--cce-EEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCC--Cce-eeeeeecccccEEEE
Q 021459 43 DKTVIIWSASS--LAL-VHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDART--PFD-CLKTLRGHSDFVFCV 113 (312)
Q Consensus 43 d~~i~vw~~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~--~~~-~~~~~~~~~~~v~~~ 113 (312)
++-|.+|++.+ +++ ......+.+.++-|+|+|+++.|.++..+ |.|-.|.++. +.. .+.........-..+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56799998773 221 11223456778899999999999888554 5666666543 221 111111111222678
Q ss_pred EEecCCCEEEEeecC-CcEEEEEcCC-CeEEE--EeeecCcC----------eEEEEEccCCCEEEEeeC-CCeEEEEeC
Q 021459 114 NFNPQSNLIVSGSFD-ESIRIWEVKT-GKCTR--VIRAHSMP----------VTSVHFNRDGSLIVSGSH-DGTCKIWDA 178 (312)
Q Consensus 114 ~~~~~~~~l~s~~~d-g~i~~wd~~~-~~~~~--~~~~~~~~----------v~~~~~~~~~~~l~~~~~-d~~i~iwd~ 178 (312)
+.++++++++++... |.|.++-++. |.... .+..|..+ +....+.|+++++++..- ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 899999999988765 7899998865 32221 12223333 677889999998887653 347899999
Q ss_pred CCCceeeEc--ccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCC-cEEEEEEcc-------CCceeEEEEEEEcc
Q 021459 179 GEGACLKTL--IDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAG-KFLKIYTGH-------TNKKYCITSTFSVT 247 (312)
Q Consensus 179 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~-~~~~~~~~~-------~~~~~~~~~~~~~~ 247 (312)
..+.....- .-..+..-..+.|+|++++..+.. .+++|.+|.+... ..+..++.. .+.. ........+
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~-~~aaIhis~ 253 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTN-WAAAIHISP 253 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCC-ceeEEEECC
Confidence 877643211 112334456678999999876654 5899999998773 222222221 1111 222233457
Q ss_pred CCcEEEEeec-CCeEEEEECCch-h---eeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 248 NGKYIVSGSE-DNCVYVWDLQQK-T---MIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 248 ~~~~l~~~~~-dg~i~iwd~~~~-~---~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
+|++|.+... ...|.+|.+... . .+.....+...-+...+.|.+.+|++++.++| +|.++..|
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd-~i~vf~~d 321 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD-NITVFERD 321 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC-cEEEEEEc
Confidence 8999876542 346788876432 2 22333334455688999999999999999887 48887654
No 263
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.36 E-value=2.3e-11 Score=104.55 Aligned_cols=299 Identities=21% Similarity=0.354 Sum_probs=175.3
Q ss_pred CCCceeceeeecc-cccceEEEEECCCCCEEEEEeCCCeEEEEeCCC-cceEEEeeecc--CCEEEEEEccCC--CeEEE
Q 021459 8 PYKPYRHFKTLTA-HSRAVSCVKFSNDGTLLASASLDKTVIIWSASS-LALVHRFVGHS--EGISDLAWSSDS--HYICS 81 (312)
Q Consensus 8 ~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~-~~~~~~~~~~~--~~v~~~~~~~~~--~~l~~ 81 (312)
||....+-+.|.- -...+.++..+|.|+-+|.++.-|...+ |+.. +... ++..|. -.|-.+.|+|.. .+-++
T Consensus 9 pyns~tf~kslsl~v~~~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~pp-r~l~h~tpw~vad~qws~h~a~~~wiV 86 (1081)
T KOG0309|consen 9 PYNSPTFGKSLSLKVDGGFNAVSINPSGRDIVLASRQGLYII-DLDDPFTPP-RWLHHITPWQVADVQWSPHPAKPYWIV 86 (1081)
T ss_pred CCCCCccCceeEEEecCcccceeeccccchhhhhhhcCeEEE-eccCCCCCc-eeeeccCcchhcceecccCCCCceeEE
Confidence 4444344444433 4667889999999999999988775444 5543 2222 222232 346678888753 34343
Q ss_pred EcCCCeEEEEeCCCCc--eeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeE-EEEeeecCcCeEEEEE
Q 021459 82 ASDDRTLRIWDARTPF--DCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKC-TRVIRAHSMPVTSVHF 157 (312)
Q Consensus 82 ~~~d~~v~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~ 157 (312)
......-.+|++..+. ..-..+.+|...+..+-|+|+. ..+++++.|..+..||+++... ...+..-......++|
T Consensus 87 sts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkw 166 (1081)
T KOG0309|consen 87 STSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKW 166 (1081)
T ss_pred ecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeee
Confidence 3444556789875432 2233457899999999999975 4789999999999999987643 3333333345567888
Q ss_pred ccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC-CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCc
Q 021459 158 NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP-NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK 236 (312)
Q Consensus 158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 236 (312)
+.-..-+++.+..+.|.+||++.+.........+-..+..+.|.. -...+.+++.|++|+.||.............+..
T Consensus 167 nyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~ 246 (1081)
T KOG0309|consen 167 NYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNF 246 (1081)
T ss_pred cccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccC
Confidence 875555666677778999999987644333222333333333321 1235677889999999998654322111111110
Q ss_pred eeEEEEEEEc-cCCcEEEEeecCCeEEE---------EECCc-hheeecccCCccceEEEEEcCCCc----------eEE
Q 021459 237 KYCITSTFSV-TNGKYIVSGSEDNCVYV---------WDLQQ-KTMIQKLDGHTDSVISVTCHPTEN----------KIA 295 (312)
Q Consensus 237 ~~~~~~~~~~-~~~~~l~~~~~dg~i~i---------wd~~~-~~~~~~~~~h~~~v~~l~~~p~~~----------~l~ 295 (312)
. .+...+.+ .+|..+.---.+..+.+ |+..+ .+.+..+.||.+.|...-|-..+. +|+
T Consensus 247 p-iw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLV 325 (1081)
T KOG0309|consen 247 P-IWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLV 325 (1081)
T ss_pred c-ceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEE
Confidence 0 01111110 11111111111113333 33322 356788999999998887753322 566
Q ss_pred EeeecCCeeEEEEeec
Q 021459 296 SAGLDGDRTVRVWVQD 311 (312)
Q Consensus 296 ~~~~dgd~~v~iw~~~ 311 (312)
|=| .|.++|+|.++
T Consensus 326 TWS--kD~~lrlWpI~ 339 (1081)
T KOG0309|consen 326 TWS--KDQTLRLWPID 339 (1081)
T ss_pred Eee--cCCceEeeecc
Confidence 655 77899999874
No 264
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.4e-09 Score=90.94 Aligned_cols=272 Identities=17% Similarity=0.251 Sum_probs=170.0
Q ss_pred ceEEEEECCCCCEEEEEeC-----------CCeEEEEeCCCcceEEEeee--ccCCEE-EEEEccCCCeEEEEcCCCeEE
Q 021459 24 AVSCVKFSNDGTLLASASL-----------DKTVIIWSASSLALVHRFVG--HSEGIS-DLAWSSDSHYICSASDDRTLR 89 (312)
Q Consensus 24 ~v~~~~~s~~~~~l~t~~~-----------d~~i~vw~~~~~~~~~~~~~--~~~~v~-~~~~~~~~~~l~~~~~d~~v~ 89 (312)
.|.-+.|||..++|+|=+. ...++|||+.+|.+...+.. ....+. -+.||.|++++|.-.. ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 4778899999999998543 26799999999988766654 222232 3689999999987655 5688
Q ss_pred EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC-----CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEE
Q 021459 90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD-----ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI 164 (312)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 164 (312)
||+... ..++..-.-.-..|....|+|.++.|+-=... -.+.+..+.+++.+++...+...-..+.|-.+|.+|
T Consensus 330 IyEtps-f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 330 IYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEecCc-eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 887644 22221111123467788899988887643221 246677777777776655554444457788888877
Q ss_pred EEe----------eCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec---CCeEEEEEcCC-CcEEEEE
Q 021459 165 VSG----------SHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL---DSTLKLWNYSA-GKFLKIY 230 (312)
Q Consensus 165 ~~~----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~v~d~~~-~~~~~~~ 230 (312)
..- +.-..+.|+.++..........-. ..+-..+|-|.|+.+++-+. ..++.+|...+ .......
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velk-e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lV 487 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELK-ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLV 487 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecc-hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhh
Confidence 642 122245667766655433322222 33455679999988776533 35788887763 2211111
Q ss_pred EccCCceeEEEEEEEccCCcEEEEe---ecCCeEEEEECCchheee-cccCCccceEEEEEcCCCceEEEeeecC
Q 021459 231 TGHTNKKYCITSTFSVTNGKYIVSG---SEDNCVYVWDLQQKTMIQ-KLDGHTDSVISVTCHPTENKIASAGLDG 301 (312)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~~~~~dg 301 (312)
. .-....+- ..++.|.|++++.+ |..|.+.++|........ ....|. ..+.+.|.|.|.+++|++.-+
T Consensus 488 k-~~dk~~~N-~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 488 K-ELDKKFAN-TVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred h-hhcccccc-eEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehh
Confidence 1 11122333 34566889988765 567899999987422222 223343 357889999999999987644
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.34 E-value=3.6e-09 Score=90.14 Aligned_cols=256 Identities=15% Similarity=0.105 Sum_probs=146.7
Q ss_pred CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEE-EEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccE--
Q 021459 34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISD-LAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFV-- 110 (312)
Q Consensus 34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v-- 110 (312)
+..++.++.++.+..+|..+++.+.+.... ..+.+ ... .+..++.++.++.+..||..++.. +-..+......
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~~ 180 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALTL 180 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCceee
Confidence 445666666777777777777665544322 11211 111 244566677788899998877543 22221111100
Q ss_pred ---EEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCc----C---eEEEEEcc--CCCEEEEeeCCCeEEEEeC
Q 021459 111 ---FCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM----P---VTSVHFNR--DGSLIVSGSHDGTCKIWDA 178 (312)
Q Consensus 111 ---~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~----~---v~~~~~~~--~~~~l~~~~~d~~i~iwd~ 178 (312)
.+.... +..++.+..++.+..+|.++|+.+-....... . ...+.-+| .+..+++++.+|.+..+|.
T Consensus 181 ~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 181 RGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred cCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence 011111 24677788889999999999876543221100 0 00000011 3457777888999999999
Q ss_pred CCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC
Q 021459 179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED 258 (312)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 258 (312)
.+++..-.... .. .. .....+..+.+++.+|.+..+|..+++.+.......... .. ... ..+..+++++.+
T Consensus 259 ~tG~~~W~~~~--~~-~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~--~s-sp~-i~g~~l~~~~~~ 329 (377)
T TIGR03300 259 RSGRVLWKRDA--SS-YQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ--LT-APA-VVGGYLVVGDFE 329 (377)
T ss_pred CCCcEEEeecc--CC-cc--CceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCc--cc-cCE-EECCEEEEEeCC
Confidence 98876544321 11 11 112245678888899999999999887654432111111 00 001 125688889999
Q ss_pred CeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEE
Q 021459 259 NCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRV 307 (312)
Q Consensus 259 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~i 307 (312)
|.|.++|..+++.+.+++.+...+..--.-.+ +.|..++.|| .|..
T Consensus 330 G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG--~l~~ 375 (377)
T TIGR03300 330 GYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDG--DLYA 375 (377)
T ss_pred CEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCc--eEEE
Confidence 99999999999888777655543332222223 4577777665 5544
No 266
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.33 E-value=5.4e-08 Score=77.64 Aligned_cols=247 Identities=13% Similarity=0.215 Sum_probs=154.3
Q ss_pred ccccceEEEEECCCCCEEEEEeCC---CeEEEEeCCC--cce--EEEeeeccCCEEEEEEccCCCeEEEEcC-CCeEEEE
Q 021459 20 AHSRAVSCVKFSNDGTLLASASLD---KTVIIWSASS--LAL--VHRFVGHSEGISDLAWSSDSHYICSASD-DRTLRIW 91 (312)
Q Consensus 20 ~h~~~v~~~~~s~~~~~l~t~~~d---~~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~w 91 (312)
.+....+-|+|+|+++.|.++..+ |.|-.|.+.. +.+ +.+......+-..+++++++++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 456678889999999999887554 6677666553 443 2322222334478999999999998865 4788998
Q ss_pred eCCCCce--eeeeeeccccc----------EEEEEEecCCCEEEEeecC-CcEEEEEcCCCeEEEEee---ecCcCeEEE
Q 021459 92 DARTPFD--CLKTLRGHSDF----------VFCVNFNPQSNLIVSGSFD-ESIRIWEVKTGKCTRVIR---AHSMPVTSV 155 (312)
Q Consensus 92 d~~~~~~--~~~~~~~~~~~----------v~~~~~~~~~~~l~s~~~d-g~i~~wd~~~~~~~~~~~---~~~~~v~~~ 155 (312)
-++.... .......|.+. +.+..+.|+++++++.+.. ..|.+|++..++....-. .....-+.|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 7754211 11112224433 7788899999999988653 469999998776443221 223456889
Q ss_pred EEccCCCEEEEee-CCCeEEEEeCCCC-ceeeEc------ccC--CCCcEEEEEECCCCCEEEEEec-CCeEEEEEcCCC
Q 021459 156 HFNRDGSLIVSGS-HDGTCKIWDAGEG-ACLKTL------IDD--KDPAVSFAKFSPNGKFILVGTL-DSTLKLWNYSAG 224 (312)
Q Consensus 156 ~~~~~~~~l~~~~-~d~~i~iwd~~~~-~~~~~~------~~~--~~~~~~~~~~~~~~~~l~~~~~-d~~i~v~d~~~~ 224 (312)
.|+|++++..+.. -+++|.+|..... ..+..+ ... .......+.+++||++|.++.. ...|.+|.+...
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 9999999876554 5789999987653 112111 111 2234566789999999998742 347778776543
Q ss_pred -cEEEEEEcc-CCceeEEEEEEEccCCcEEEEeec-CCeEEEEECC
Q 021459 225 -KFLKIYTGH-TNKKYCITSTFSVTNGKYIVSGSE-DNCVYVWDLQ 267 (312)
Q Consensus 225 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~ 267 (312)
..+...... ......-...+. +.+++|+++++ +..|.+|...
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~-~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNIN-PSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeC-CCCCEEEEEccCCCcEEEEEEc
Confidence 223322211 111111122222 56777766654 4668888764
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.33 E-value=1.3e-10 Score=89.47 Aligned_cols=153 Identities=21% Similarity=0.304 Sum_probs=112.8
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCcce--EEEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459 26 SCVKFSNDGTLLASASLDKTVIIWSASSLAL--VHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDARTPFDCLKT 102 (312)
Q Consensus 26 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~~~~~~~~ 102 (312)
.++.|++.+..++++-.+|.+.+-+.....+ ...++.|..+.+-..|+.. .+++.+|++|+.+..||++.+...+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 3677889899999999999998655544433 3478899999998999864 578999999999999999965554443
Q ss_pred -eecccccEEEEEEec-CCCEEEEeecCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEccCC--CEEEEeeCCCeEEEEe
Q 021459 103 -LRGHSDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNRDG--SLIVSGSHDGTCKIWD 177 (312)
Q Consensus 103 -~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iwd 177 (312)
.+.|...|.++.-+| .+..+++|++|-.|++||+++. +++..- .-.+.|+.+.++|.- .+++++..+| .++-+
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~ 282 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILD 282 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcC-ceEEE
Confidence 556888888887765 5679999999999999999854 433222 234678999999843 3455555554 45555
Q ss_pred CCC
Q 021459 178 AGE 180 (312)
Q Consensus 178 ~~~ 180 (312)
...
T Consensus 283 ~~~ 285 (339)
T KOG0280|consen 283 SSD 285 (339)
T ss_pred ecc
Confidence 543
No 268
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=4.7e-10 Score=96.47 Aligned_cols=269 Identities=12% Similarity=0.177 Sum_probs=179.1
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCc---------------ceEEEeeeccCCEEEEEEccCCCeEEEEcCC
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSL---------------ALVHRFVGHSEGISDLAWSSDSHYICSASDD 85 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 85 (312)
......|++|+.+..+||.||.||.++|..+.+. .+-..+.||...|.-+.|+.+.+.|-+...+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4456789999999999999999999999865421 1224578999999999999999999999999
Q ss_pred CeEEEEeCCCCceeeeee-ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE-EEeeecCcCeEEEEEccCCCE
Q 021459 86 RTLRIWDARTPFDCLKTL-RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT-RVIRAHSMPVTSVHFNRDGSL 163 (312)
Q Consensus 86 ~~v~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~ 163 (312)
|.|.+|-+-.+.-+-... ....+.|.+++|+.||..+.....||.|.+=.+...+.- +.+++ .....+.|++|.+.
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQ 170 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHH
Confidence 999999875532111101 113457889999999999999999998877665543321 11221 22346789999999
Q ss_pred EEEeeCCCeEEEEeCCCCceee-------Ec---ccCCCCcEEE--------EEECCCCCEEEEEecCCeEEEEEcCC-C
Q 021459 164 IVSGSHDGTCKIWDAGEGACLK-------TL---IDDKDPAVSF--------AKFSPNGKFILVGTLDSTLKLWNYSA-G 224 (312)
Q Consensus 164 l~~~~~d~~i~iwd~~~~~~~~-------~~---~~~~~~~~~~--------~~~~~~~~~l~~~~~d~~i~v~d~~~-~ 224 (312)
++.+-.+|.+.++|....-..+ .. .......+.. ....|+...|+++...|.+.+-.-.+ .
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 8888889999999865431110 00 0000001111 12346888999999999887743222 2
Q ss_pred cEEEEEEccCCceeEEEEEEEccCCcEEEEeecC---------CeEEEEECCchheeecccCCccceEEEEEcCCCceEE
Q 021459 225 KFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED---------NCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIA 295 (312)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~ 295 (312)
.++- +.. + -. +....+.++|.+|+.++.+ +.|.+|.. -+..+..++.....|+++.|-..|-.++
T Consensus 251 ~Pvv-~dt--g-m~-~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA 324 (1189)
T KOG2041|consen 251 EPVV-VDT--G-MK-IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIA 324 (1189)
T ss_pred CCeE-Eec--c-cE-eecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEE
Confidence 2221 111 1 11 2334455789999887754 35666643 3556677777778899999988877776
Q ss_pred Ee
Q 021459 296 SA 297 (312)
Q Consensus 296 ~~ 297 (312)
.+
T Consensus 325 ~A 326 (1189)
T KOG2041|consen 325 IA 326 (1189)
T ss_pred EE
Confidence 65
No 269
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.32 E-value=4.8e-09 Score=86.86 Aligned_cols=275 Identities=15% Similarity=0.194 Sum_probs=175.4
Q ss_pred cceEEEEECCCCCEEEEEeCC---------------CeEEEEeCCCcceEEEeeeccCC--EE-EEEEccCCCeEEEEcC
Q 021459 23 RAVSCVKFSNDGTLLASASLD---------------KTVIIWSASSLALVHRFVGHSEG--IS-DLAWSSDSHYICSASD 84 (312)
Q Consensus 23 ~~v~~~~~s~~~~~l~t~~~d---------------~~i~vw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~ 84 (312)
..|..+.|||.+++|.|=+.. ..+.+||..++..+..+.+...+ .+ -+.|+-+..++|-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 457788999999999985432 24899999999988877765554 44 57888888777655 3
Q ss_pred CCeEEEEeCCCCcee---eeeeecccccEEEEEEecCCC--EEEE-----eecCCcEEEEEcCCCeEEEEeeecCcCeEE
Q 021459 85 DRTLRIWDARTPFDC---LKTLRGHSDFVFCVNFNPQSN--LIVS-----GSFDESIRIWEVKTGKCTRVIRAHSMPVTS 154 (312)
Q Consensus 85 d~~v~~wd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~--~l~s-----~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 154 (312)
...++++++ ++.-. .+.++ ...+....++|.++ .|+. .+..+.+++|.+..++.+......+..-..
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~q 227 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQ 227 (561)
T ss_pred cCeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccE
Confidence 457899986 32111 11111 24567777888643 3332 345678999999876655543333333456
Q ss_pred EEEccCCCEEEEee-----------CCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE--ecCCeEEEEEc
Q 021459 155 VHFNRDGSLIVSGS-----------HDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG--TLDSTLKLWNY 221 (312)
Q Consensus 155 ~~~~~~~~~l~~~~-----------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~i~v~d~ 221 (312)
+.|.+.|++++.-. ....+.+++++...+.... .....+...+|.|.++.+++. ..+..+.++|+
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec--cccccceeeeecccCCceeEEecccccceeeccc
Confidence 88999888765321 1245677777643332221 234557777899988877664 46778999998
Q ss_pred CCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeec---CCeEEEEECCchheee-cccCCccceEEEEEcCCCceEEEe
Q 021459 222 SAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE---DNCVYVWDLQQKTMIQ-KLDGHTDSVISVTCHPTENKIASA 297 (312)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~p~~~~l~~~ 297 (312)
+.. ....+ ....... .++.+.+++++.++- .|.|.+||....-.+. .+.+- ....+.|+|+++++.++
T Consensus 306 r~N-l~~~~--Pe~~rNT---~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~ 377 (561)
T COG5354 306 RGN-LRFYF--PEQKRNT---IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTD 377 (561)
T ss_pred ccc-eEEec--CCccccc---ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEec
Confidence 766 22222 1222111 223466788777554 4789999987654443 55443 34566899999988876
Q ss_pred ee----cCCeeEEEEeec
Q 021459 298 GL----DGDRTVRVWVQD 311 (312)
Q Consensus 298 ~~----dgd~~v~iw~~~ 311 (312)
.. .-|..+.||++.
T Consensus 378 ~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 378 TTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred CCCcccccCcceEEEEec
Confidence 43 235789999974
No 270
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.31 E-value=1.2e-09 Score=84.31 Aligned_cols=264 Identities=14% Similarity=0.206 Sum_probs=157.6
Q ss_pred CCCeEEEEeCCCcceEE--Ee-eeccCCEEEEEEcc---CCC-eEEEEcCCCeEEEEeCCCCceeeeeeecc------cc
Q 021459 42 LDKTVIIWSASSLALVH--RF-VGHSEGISDLAWSS---DSH-YICSASDDRTLRIWDARTPFDCLKTLRGH------SD 108 (312)
Q Consensus 42 ~d~~i~vw~~~~~~~~~--~~-~~~~~~v~~~~~~~---~~~-~l~~~~~d~~v~~wd~~~~~~~~~~~~~~------~~ 108 (312)
..|.+.+|++...+... .+ ...+..+..+.|.. +|. .++-+..+|.|.++....... ...+++- ..
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s-s~~L~~ls~~ki~~~ 122 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES-SVHLRGLSSKKISVV 122 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeecccee-eeeecccchhhhhhe
Confidence 34678888887665433 22 22345677788863 455 566677889999997643211 1122211 11
Q ss_pred cEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE--EEeeecCcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCC-Ccee
Q 021459 109 FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT--RVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGE-GACL 184 (312)
Q Consensus 109 ~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~-~~~~ 184 (312)
...++.|++.+..++++..+|.+.+-+....... +..+.|..+.+..+|+. +.+++.+|+.|+.+..||+|. ++.+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 2457788898999999999999985554444333 36788999999999876 446899999999999999993 3333
Q ss_pred eE-cccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC-CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEE
Q 021459 185 KT-LIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA-GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVY 262 (312)
Q Consensus 185 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 262 (312)
.+ ...+....++...-.|.+.++++|+.|-.|++||.++ ++++..-.. .+..+.+.-... ...++|+++=.+| .+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~~~p~-~~~~lL~~CMh~G-~k 279 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIKHHPE-IFHRLLAACMHNG-AK 279 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEEecch-hhhHHHHHHHhcC-ce
Confidence 22 1222334444444456788999999999999999984 444332111 122222221111 1122333333333 34
Q ss_pred EEECCch--h---eeecccCCccceEEEEEcCCCceEEEeeecCCeeEE-EEee
Q 021459 263 VWDLQQK--T---MIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR-VWVQ 310 (312)
Q Consensus 263 iwd~~~~--~---~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~-iw~~ 310 (312)
|-+.+.. + .....+.|.+-+..-.|......|+|++.- |..++ +|..
T Consensus 280 i~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFY-Dk~~~~~Wl~ 332 (339)
T KOG0280|consen 280 ILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFY-DKKIRQLWLH 332 (339)
T ss_pred EEEecccccchheeeeccccccceeeccccccccceeeeeecc-ccceeeeeee
Confidence 4444322 2 233445666666666674445678887764 34544 7753
No 271
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.31 E-value=1.7e-08 Score=86.01 Aligned_cols=260 Identities=13% Similarity=0.092 Sum_probs=153.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEE
Q 021459 33 DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFC 112 (312)
Q Consensus 33 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~ 112 (312)
.+..++.++.++.+..+|..+++.+.+..........+. .++..++.++.++.+..+|..++...-+ ... .+.+.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~-~~~~~~ 139 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWR-AKL-SSEVLS 139 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeee-ecc-Cceeec
Confidence 466788888899999999999988766543332112222 2466788888999999999887644322 211 122221
Q ss_pred EEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCe-----EEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEc
Q 021459 113 VNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPV-----TSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL 187 (312)
Q Consensus 113 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (312)
.... .+..++.+..+|.|+.+|.++|+.+-.++...... ...... + ..++.+..++.+..+|..+++..-+.
T Consensus 140 ~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~ 216 (377)
T TIGR03300 140 PPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQ 216 (377)
T ss_pred CCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeee
Confidence 1111 24567777889999999999998765544322111 011111 3 36777888899999999888755332
Q ss_pred ccCCC---Cc---EEEEEECC--CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC
Q 021459 188 IDDKD---PA---VSFAKFSP--NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN 259 (312)
Q Consensus 188 ~~~~~---~~---~~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 259 (312)
..... .. .....-+| .+..+.+++.+|.++.||..+++.+....... . . ... ..+..++.++.+|
T Consensus 217 ~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~-~----~p~-~~~~~vyv~~~~G 289 (377)
T TIGR03300 217 RVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-Y-Q----GPA-VDDNRLYVTDADG 289 (377)
T ss_pred ccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-c-c----Cce-EeCCEEEEECCCC
Confidence 11000 00 00000011 34577788889999999999988665443111 0 0 111 1345777788999
Q ss_pred eEEEEECCchheeecccCCcc-ceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 260 CVYVWDLQQKTMIQKLDGHTD-SVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 260 ~i~iwd~~~~~~~~~~~~h~~-~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
.|..+|..+++.+-+...... ....... .+..+++++.+ +.|++++.
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~--G~l~~~d~ 337 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFE--GYLHWLSR 337 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCC--CEEEEEEC
Confidence 999999988876544321111 1111112 34567777644 46777664
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=3.2e-11 Score=103.45 Aligned_cols=233 Identities=17% Similarity=0.224 Sum_probs=161.5
Q ss_pred CEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc--------------eeeeeeecccccEEEEEEecCCCEEEEeecCCcE
Q 021459 66 GISDLAWSSDSHYICSASDDRTLRIWDARTPF--------------DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESI 131 (312)
Q Consensus 66 ~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i 131 (312)
...+++|+.+..++++|+.||.+++..+.+.. ...+++.||.+.|.-+.|+.+...|-++..+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 45689999999999999999999999775421 1235678999999999999999999999999999
Q ss_pred EEEEcCCCeEEEEe--eecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCcee-eEcccCCCCcEEEEEECCCCCEEE
Q 021459 132 RIWEVKTGKCTRVI--RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL-KTLIDDKDPAVSFAKFSPNGKFIL 208 (312)
Q Consensus 132 ~~wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 208 (312)
.+|-+-.|+-...+ ...++-|.+++|..+|..+.....||.|.+=.+..++.- +.+ .......+.|++|.+.++
T Consensus 96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL---kg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL---KGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc---chheccceeecccHHHHH
Confidence 99998766533222 123456889999999999999999998876554433221 111 122344667999999999
Q ss_pred EEecCCeEEEEEcCCCcEEE-----------EEEccCCceeEE-----EEEEEccCCcEEEEeecCCeEEEEECCchhee
Q 021459 209 VGTLDSTLKLWNYSAGKFLK-----------IYTGHTNKKYCI-----TSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMI 272 (312)
Q Consensus 209 ~~~~d~~i~v~d~~~~~~~~-----------~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 272 (312)
.+-.+|.+.++|-+..-..+ .+.........+ .....+|+-..|+.+-.+|.+.+-.-.+....
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 99899999999975432111 011000000000 11223456678999999999988755443322
Q ss_pred ecccCCccceEEEEEcCCCceEEEeeecCC
Q 021459 273 QKLDGHTDSVISVTCHPTENKIASAGLDGD 302 (312)
Q Consensus 273 ~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd 302 (312)
..+. ..-.+....|+++|..|+.+|.|.|
T Consensus 253 vv~d-tgm~~vgakWnh~G~vLAvcG~~~d 281 (1189)
T KOG2041|consen 253 VVVD-TGMKIVGAKWNHNGAVLAVCGNDSD 281 (1189)
T ss_pred eEEe-cccEeecceecCCCcEEEEccCccc
Confidence 2222 1245788899999999999998765
No 273
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.30 E-value=1.3e-07 Score=78.01 Aligned_cols=237 Identities=12% Similarity=0.101 Sum_probs=141.4
Q ss_pred ECCCCCEEEEEeC----------CCeEEEEeCCCcceEEEeeeccC-------CEEEEEEccCCCeEEEEc-C-CCeEEE
Q 021459 30 FSNDGTLLASASL----------DKTVIIWSASSLALVHRFVGHSE-------GISDLAWSSDSHYICSAS-D-DRTLRI 90 (312)
Q Consensus 30 ~s~~~~~l~t~~~----------d~~i~vw~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~-d~~v~~ 90 (312)
+|||++.|+.+.. +..|.+||..+++.+.++.--.. ....++++|||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998877655 78999999999999887763211 234789999999999776 3 689999
Q ss_pred EeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC-CCeEE-EEeee-cC--cCeEE-EEEcc-CCCE
Q 021459 91 WDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK-TGKCT-RVIRA-HS--MPVTS-VHFNR-DGSL 163 (312)
Q Consensus 91 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~-~~~~~-~~--~~v~~-~~~~~-~~~~ 163 (312)
.|+.+. +.+..+.-. +...-...+++.+. .-+.||......+. +++.. ..... +. .++.. -.+.+ +|++
T Consensus 133 vD~~~~-kvv~ei~vp-~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~ 208 (352)
T TIGR02658 133 VDLEGK-AFVRMMDVP-DCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL 208 (352)
T ss_pred EECCCC-cEEEEEeCC-CCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence 999875 444444321 11111111222222 11234444333222 12211 11110 11 11100 03345 7887
Q ss_pred EEEeeCCCeEEEEeCCCCce-----eeEccc------CCCCcEEEEEECCCCCEEEEEe----------cCCeEEEEEcC
Q 021459 164 IVSGSHDGTCKIWDAGEGAC-----LKTLID------DKDPAVSFAKFSPNGKFILVGT----------LDSTLKLWNYS 222 (312)
Q Consensus 164 l~~~~~d~~i~iwd~~~~~~-----~~~~~~------~~~~~~~~~~~~~~~~~l~~~~----------~d~~i~v~d~~ 222 (312)
+.+... |.|.+.|+..... ...+.. ........++++++++.+.+.. ..+.|.++|..
T Consensus 209 ~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~ 287 (352)
T TIGR02658 209 VWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK 287 (352)
T ss_pred EEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC
Confidence 777666 9999999644321 111110 0112233478999999888743 22579999999
Q ss_pred CCcEEEEEEccCCceeEEEEEEEccCCc-EEEEee-cCCeEEEEECCchheeecc
Q 021459 223 AGKFLKIYTGHTNKKYCITSTFSVTNGK-YIVSGS-EDNCVYVWDLQQKTMIQKL 275 (312)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~ 275 (312)
+++.+..+..... ...+ . ..++++ +|++.+ .++.|.++|..+.+.+..+
T Consensus 288 t~kvi~~i~vG~~-~~~i--a-vS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 288 TGKRLRKIELGHE-IDSI--N-VSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCeEEEEEeCCCc-eeeE--E-ECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 9998877664322 2222 2 346777 666555 6889999999998888776
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.30 E-value=2.1e-08 Score=94.92 Aligned_cols=241 Identities=12% Similarity=0.148 Sum_probs=150.9
Q ss_pred EEEEECCC-CCEEEEEeCCCeEEEEeCCCcceEEEeee--------------ccCCEEEEEEccCCCeEEEEcC-CCeEE
Q 021459 26 SCVKFSND-GTLLASASLDKTVIIWSASSLALVHRFVG--------------HSEGISDLAWSSDSHYICSASD-DRTLR 89 (312)
Q Consensus 26 ~~~~~s~~-~~~l~t~~~d~~i~vw~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~-d~~v~ 89 (312)
..+++++. +++.++-..++.|++++.... .+..+.+ +-.....+++.++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35788875 556666677889999997643 3332221 1123468999998887666544 46788
Q ss_pred EEeCCCCceeeeeeecc-----------------cccEEEEEEec-CCCEEEEeecCCcEEEEEcCCCeEEEEeeec---
Q 021459 90 IWDARTPFDCLKTLRGH-----------------SDFVFCVNFNP-QSNLIVSGSFDESIRIWEVKTGKCTRVIRAH--- 148 (312)
Q Consensus 90 ~wd~~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--- 148 (312)
++|..+.. +.++.+- -..-..++++| ++..+++.+.++.|++||..++.... +.+.
T Consensus 650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYE 726 (1057)
T ss_pred EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCcc
Confidence 89876532 3222110 01124688999 45566777778899999988775432 1110
Q ss_pred ------------CcCeEEEEEccCCC-EEEEeeCCCeEEEEeCCCCceeeEc------------ccCC--------CCcE
Q 021459 149 ------------SMPVTSVHFNRDGS-LIVSGSHDGTCKIWDAGEGACLKTL------------IDDK--------DPAV 195 (312)
Q Consensus 149 ------------~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~------------~~~~--------~~~~ 195 (312)
-.....++++|+++ ++++-+.++.|++||+.++...... .... ....
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 12345799999988 5556667789999998765421100 0000 0012
Q ss_pred EEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccC----------C-ceeEEEEEEEccCCcEEEEeecCCeEEEE
Q 021459 196 SFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHT----------N-KKYCITSTFSVTNGKYIVSGSEDNCVYVW 264 (312)
Q Consensus 196 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 264 (312)
..++++++|..+++-+.++.|++||..++.......... . ....... ...++|+++++-+.++.|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GI-avd~dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGL-ALGENGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEE-EEeCCCCEEEEECCCCEEEEE
Confidence 356789999988888889999999988776543321100 0 0011112 223678899999999999999
Q ss_pred ECCchhe
Q 021459 265 DLQQKTM 271 (312)
Q Consensus 265 d~~~~~~ 271 (312)
|+.+++.
T Consensus 886 d~~~~~~ 892 (1057)
T PLN02919 886 DLNKGEA 892 (1057)
T ss_pred ECCCCcc
Confidence 9987654
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=1.4e-11 Score=102.69 Aligned_cols=205 Identities=20% Similarity=0.383 Sum_probs=140.1
Q ss_pred eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-------eEEEEeeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459 100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG-------KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGT 172 (312)
Q Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
+..+.||...|..+.--.+.+-+++++.|.+|++|.++.. .+..+++.|+.+|.++.|-.+.+++++ .||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 4567789888888776667788999999999999998642 355677899999999999988887765 5889
Q ss_pred EEEEeCCCCceeeEcccC-CCCcEEEEEECC--CCCEEEEE-ecCCeEEEEEcCCCcEEEEEEcc--CCceeEEEEEEEc
Q 021459 173 CKIWDAGEGACLKTLIDD-KDPAVSFAKFSP--NGKFILVG-TLDSTLKLWNYSAGKFLKIYTGH--TNKKYCITSTFSV 246 (312)
Q Consensus 173 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~ 246 (312)
|.+||.--++.+.++... .......+..-+ +...+.++ +...+|+++|.+.++....+... ..+..........
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 999998777665543322 122222222223 44455554 78899999999998876554432 2221122233344
Q ss_pred cCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEE-Ee
Q 021459 247 TNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRV-WV 309 (312)
Q Consensus 247 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~i-w~ 309 (312)
+.|+.++.+-.+|+|.+-|.+++..+..+..-+.....++- |..+.|+....| .++.+ |+
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~sald--HslaVnWh 946 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALD--HSLAVNWH 946 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhccc--ceeEeeeh
Confidence 77999999999999999999999887766655544444443 444556555533 35555 54
No 276
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=2.5e-10 Score=98.85 Aligned_cols=288 Identities=18% Similarity=0.275 Sum_probs=171.7
Q ss_pred CceeceeeecccccceEEEEECCCC------------CEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEcc---
Q 021459 10 KPYRHFKTLTAHSRAVSCVKFSNDG------------TLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS--- 74 (312)
Q Consensus 10 ~~~~~~~~~~~h~~~v~~~~~s~~~------------~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--- 74 (312)
..++.++.+..|...|+.++|+|.. -+||++...|.|.+||......+..+..|.+++.+++|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd 122 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARD 122 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccC
Confidence 3467778888999999999998742 2577888899999999999888888888999999999976
Q ss_pred CC-CeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEec------------------------------------
Q 021459 75 DS-HYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNP------------------------------------ 117 (312)
Q Consensus 75 ~~-~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~------------------------------------ 117 (312)
+. ..|++-.....+.+|+..++.+.-+.-.+| ....|+.+.|
T Consensus 123 ~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 123 DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred cchheeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 33 567777778899999887654332221111 2233344333
Q ss_pred ---------------------------------------CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEc
Q 021459 118 ---------------------------------------QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFN 158 (312)
Q Consensus 118 ---------------------------------------~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~ 158 (312)
.-+.++.......+.++|++-..++....-....+.-+.+-
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 21111222223334444544444444433333333345555
Q ss_pred cC--CCEEEEeeCCCeEEEEeCCCCceee-----EcccCCCCcEEE-----------EEECCC-CCEEEEEecCCeEEEE
Q 021459 159 RD--GSLIVSGSHDGTCKIWDAGEGACLK-----TLIDDKDPAVSF-----------AKFSPN-GKFILVGTLDSTLKLW 219 (312)
Q Consensus 159 ~~--~~~l~~~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~-----------~~~~~~-~~~l~~~~~d~~i~v~ 219 (312)
|+ ...+++...||.+.+|-.+...... .+..+...++.. ....|. ...++.-..+|.+.+|
T Consensus 282 P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w 361 (1062)
T KOG1912|consen 282 PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFW 361 (1062)
T ss_pred cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHH
Confidence 54 4578999999999999644311110 010011111111 112233 3344444567777778
Q ss_pred EcCCCcEEEEE-------------------------------EccCCceeEEEE--------EEEccCC-------cEEE
Q 021459 220 NYSAGKFLKIY-------------------------------TGHTNKKYCITS--------TFSVTNG-------KYIV 253 (312)
Q Consensus 220 d~~~~~~~~~~-------------------------------~~~~~~~~~~~~--------~~~~~~~-------~~l~ 253 (312)
.+.+++.-... .+|+....+..+ ....+.+ .++|
T Consensus 362 ~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvA 441 (1062)
T KOG1912|consen 362 QLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVA 441 (1062)
T ss_pred hhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEE
Confidence 77654321100 011111111111 1111122 3678
Q ss_pred EeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeee
Q 021459 254 SGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGL 299 (312)
Q Consensus 254 ~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~ 299 (312)
.|...|+|.++|+.++.....+..|...|.++.|-... .|++.+.
T Consensus 442 vGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s-slvSfsy 486 (1062)
T KOG1912|consen 442 VGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS-SLVSFSY 486 (1062)
T ss_pred eecCCceEEEEEecchhhhhhhcccccceeeeeeccce-eEEEeee
Confidence 99999999999999999999999999999999996553 4554443
No 277
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=9.8e-09 Score=85.99 Aligned_cols=274 Identities=15% Similarity=0.217 Sum_probs=162.3
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC-----------CCeEEEEeC
Q 021459 25 VSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD-----------DRTLRIWDA 93 (312)
Q Consensus 25 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~v~~wd~ 93 (312)
-+-+.|||.|.+|+|--..| |.+|--.+...++++. |+ .|.-+.|||..+||++-+. -..++|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 35689999999999987765 7889777666666553 53 5888999999999998643 157999999
Q ss_pred CCCceeeeeeecc--ccc-EEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-
Q 021459 94 RTPFDCLKTLRGH--SDF-VFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH- 169 (312)
Q Consensus 94 ~~~~~~~~~~~~~--~~~-v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
.++.. .+.+... ... -.-..|+.|+++++.-..+ +|.+|+..+-..+..-...-..|....|+|.+++||-=+.
T Consensus 290 ~tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 290 ATGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred cccch-hcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 98742 3333221 111 2335789999998877664 5889987763322111112245788899999887763221
Q ss_pred ----CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec----------CCeEEEEEcCCCcE-EEEEEccC
Q 021459 170 ----DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL----------DSTLKLWNYSAGKF-LKIYTGHT 234 (312)
Q Consensus 170 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------d~~i~v~d~~~~~~-~~~~~~~~ 234 (312)
-..+.+..+.+++.++.....+ -.-.-+.|-.+|.+|+.-.. -..+.||.++.... +....-
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfn-VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel-- 444 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFN-VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL-- 444 (698)
T ss_pred ccCCcceEEEEecCccceeeecccee-eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec--
Confidence 1245566666665554432111 11123457778888876321 11234444443321 111110
Q ss_pred CceeEEEEEEEccCCcEEEEe-e--cCCeEEEEECCc----hheeecccCCccceEEEEEcCCCceEEEeeecC-CeeEE
Q 021459 235 NKKYCITSTFSVTNGKYIVSG-S--EDNCVYVWDLQQ----KTMIQKLDGHTDSVISVTCHPTENKIASAGLDG-DRTVR 306 (312)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~-~--~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg-d~~v~ 306 (312)
....+...+. |.|+.+++- + ....+.+|.+++ ..++..+.. ...+.|-|+|.|++++.++.-+ .+.+.
T Consensus 445 -ke~vi~FaWE-P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~ 520 (698)
T KOG2314|consen 445 -KESVIAFAWE-PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLE 520 (698)
T ss_pred -chheeeeeec-cCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceE
Confidence 1122344444 445444332 2 235688887763 234455544 4568999999999998876532 24555
Q ss_pred EEee
Q 021459 307 VWVQ 310 (312)
Q Consensus 307 iw~~ 310 (312)
.+|.
T Consensus 521 F~D~ 524 (698)
T KOG2314|consen 521 FYDT 524 (698)
T ss_pred EEec
Confidence 5554
No 278
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.22 E-value=3.1e-10 Score=86.06 Aligned_cols=165 Identities=17% Similarity=0.240 Sum_probs=107.4
Q ss_pred eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcce-EEEeeeccCCEEEEEEccCCCeEEEEcC-----CCeE
Q 021459 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLAL-VHRFVGHSEGISDLAWSSDSHYICSASD-----DRTL 88 (312)
Q Consensus 15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v 88 (312)
+..+..|..+-.+-+.+--++.+++++.||.+.+++...... ..++..-...-.+.++...++.+.++.. -+..
T Consensus 82 ~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 82 FKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF 161 (319)
T ss_pred eeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence 344445666655556666677899999999999998776221 1222221222233444555666655421 2344
Q ss_pred EEEeCCCCceeeeeeecccccEEEEEEecCC-CEEEEeecCCcEEEEEcCCCeEEE-EeeecCcCeEEEEEcc-CCCEEE
Q 021459 89 RIWDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIVSGSFDESIRIWEVKTGKCTR-VIRAHSMPVTSVHFNR-DGSLIV 165 (312)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~ 165 (312)
+.|+.+.....+.. +...+.|.+++-+|.. +.+++|+.||.+-+||.++...+. .++.|+.+++.+.|+| ++..|+
T Consensus 162 ~a~~~~p~~t~~~~-~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lf 240 (319)
T KOG4714|consen 162 YANTLDPIKTLIPS-KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLF 240 (319)
T ss_pred eeeccccccccccc-ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhee
Confidence 55655432111111 1122348888888854 567888899999999999875433 4578999999999999 678999
Q ss_pred EeeCCCeEEEEeCCC
Q 021459 166 SGSHDGTCKIWDAGE 180 (312)
Q Consensus 166 ~~~~d~~i~iwd~~~ 180 (312)
++++||.+-.||..+
T Consensus 241 t~sedGslw~wdas~ 255 (319)
T KOG4714|consen 241 TCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCcEEEEcCCC
Confidence 999999999998654
No 279
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.22 E-value=4.7e-07 Score=72.36 Aligned_cols=220 Identities=15% Similarity=0.171 Sum_probs=135.7
Q ss_pred EEEEcc-CCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEe-cCCCEEEEeecCCcEEEEEcCCCeEEEEee
Q 021459 69 DLAWSS-DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFN-PQSNLIVSGSFDESIRIWEVKTGKCTRVIR 146 (312)
Q Consensus 69 ~~~~~~-~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~ 146 (312)
+++|.+ ++.++++-...+.|+.|+..+........ . . ...+.+. ++ ..++.+...+ +.++|+.+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--~-~-~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--P-G-PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--S-S-EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--C-C-CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 578988 66677776678899999988753322222 1 1 5566677 56 4555555444 5666999886654443
Q ss_pred e-----cCcCeEEEEEccCCCEEEEeeCC--------CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEE-Eec
Q 021459 147 A-----HSMPVTSVHFNRDGSLIVSGSHD--------GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILV-GTL 212 (312)
Q Consensus 147 ~-----~~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 212 (312)
. .....+.+++.|+|++.++.... |.+..++.. ++... ... .-.....++|+|+++.|.+ -+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~-~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VAD-GLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-Eec-CcccccceEECCcchheeecccc
Confidence 3 23457899999999987776543 557777766 44322 222 1233556789999997764 567
Q ss_pred CCeEEEEEcCCCcE----EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEE-
Q 021459 213 DSTLKLWNYSAGKF----LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTC- 287 (312)
Q Consensus 213 d~~i~v~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~- 287 (312)
.+.|..|++..... .+.+.................+|++.++....+.|.+++.. ++.+..+.-....+.+++|
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 78999999864321 12222111111112222334578888888889999999987 7777666554557899999
Q ss_pred cCCCceEEEee
Q 021459 288 HPTENKIASAG 298 (312)
Q Consensus 288 ~p~~~~l~~~~ 298 (312)
.|+.+.|...+
T Consensus 234 g~~~~~L~vTt 244 (246)
T PF08450_consen 234 GPDGKTLYVTT 244 (246)
T ss_dssp STTSSEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 46656555443
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.22 E-value=2.4e-10 Score=98.49 Aligned_cols=245 Identities=20% Similarity=0.325 Sum_probs=154.4
Q ss_pred ceEEEEECCCC--CEEEEEeCCCeEEEEeCCC---cceEEEeeeccCCEEEEEEccCC-CeEEEEcCCCeEEEEeCCCCc
Q 021459 24 AVSCVKFSNDG--TLLASASLDKTVIIWSASS---LALVHRFVGHSEGISDLAWSSDS-HYICSASDDRTLRIWDARTPF 97 (312)
Q Consensus 24 ~v~~~~~s~~~--~~l~t~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~wd~~~~~ 97 (312)
.|-.+.|+|.. .+-+.......-.+|++.. ...-..+.+|..+|+.+-|+|+. ..+++++.|-.+..||++.+.
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 35557787754 3434444455667887653 23344567899999999999975 589999999999999999876
Q ss_pred eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe-EEEEeeecCcCeEEEEEcc-CCCEEEEeeCCCeEEE
Q 021459 98 DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK-CTRVIRAHSMPVTSVHFNR-DGSLIVSGSHDGTCKI 175 (312)
Q Consensus 98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i 175 (312)
........-......++|+.....+++.+....|.+||++.|. .+..++.|-..++.++|.. -...+.+++.|++++.
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceee
Confidence 6655544444456778898755555566777789999998765 4456677777888888765 2346788999999999
Q ss_pred EeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE--ecCCeEEEEEcCC----------CcEEEEEEccCCceeEEEE-
Q 021459 176 WDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG--TLDSTLKLWNYSA----------GKFLKIYTGHTNKKYCITS- 242 (312)
Q Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~- 242 (312)
||..............+..+...++-|-|+-..+. -.+..+.+++.++ .+.+..+.+|.........
T Consensus 229 w~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR 308 (1081)
T KOG0309|consen 229 WDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWR 308 (1081)
T ss_pred ecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhh
Confidence 99765432211111122333334455544322221 1122344443322 3456777888764311100
Q ss_pred -----EEE-ccCCcEEEEeecCCeEEEEECCc
Q 021459 243 -----TFS-VTNGKYIVSGSEDNCVYVWDLQQ 268 (312)
Q Consensus 243 -----~~~-~~~~~~l~~~~~dg~i~iwd~~~ 268 (312)
.+. ....-.|+|-+.|..+++|.+.+
T Consensus 309 ~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 309 KRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 000 01123599999999999998754
No 281
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.1e-08 Score=85.63 Aligned_cols=193 Identities=17% Similarity=0.332 Sum_probs=129.4
Q ss_pred cccceEEEEECCCC--CEEEE-----EeCCCeEEEEeCCCcceE-----EEeeeccCCEEEEEEccCCC-eEEEE--cCC
Q 021459 21 HSRAVSCVKFSNDG--TLLAS-----ASLDKTVIIWSASSLALV-----HRFVGHSEGISDLAWSSDSH-YICSA--SDD 85 (312)
Q Consensus 21 h~~~v~~~~~s~~~--~~l~t-----~~~d~~i~vw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~-~l~~~--~~d 85 (312)
|...|+.+.+||.. ..+|+ .|.-..+++|...-...- ..+. ..+. ..+.|++-|+ +|+.+ .-|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadk-vqm~WN~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADK-VQMKWNKLGTALLVLASTDVD 241 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-ccce-eEEEeccCCceEEEEEEEeec
Confidence 67889999999863 34554 455678999976622111 1111 1122 3578888776 22222 223
Q ss_pred ---------CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEe--ecCCcEEEEEcCCCeEEEEeeecCcCeEE
Q 021459 86 ---------RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSG--SFDESIRIWEVKTGKCTRVIRAHSMPVTS 154 (312)
Q Consensus 86 ---------~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~--~~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 154 (312)
.++++++++ +..+...+. -.++|.++.|+|+++.++.+ -.=-.+.+||++- ..+. ....++-++
T Consensus 242 ktn~SYYGEq~Lyll~t~-g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~--df~egpRN~ 316 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQ-GESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVF--DFPEGPRNT 316 (566)
T ss_pred CCCccccccceEEEEEec-CceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeE--eCCCCCccc
Confidence 357777776 334333333 35799999999999876554 3346789999873 3333 334567788
Q ss_pred EEEccCCCEEEEeeCC---CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec------CCeEEEEEcCC
Q 021459 155 VHFNRDGSLIVSGSHD---GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL------DSTLKLWNYSA 223 (312)
Q Consensus 155 ~~~~~~~~~l~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------d~~i~v~d~~~ 223 (312)
+-|+|.|++++.++-+ |.+.+||..+.+.+..+. ....+...|+|||.++++++. |+.++||++..
T Consensus 317 ~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~---a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 317 AFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK---AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred eEECCCCCEEEEeecCCCCCceEEEeccchhhccccc---cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 9999999999887754 789999999876665553 233566789999999999864 67899999743
No 282
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=2.4e-09 Score=83.50 Aligned_cols=208 Identities=22% Similarity=0.400 Sum_probs=136.8
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc-----eEEEeeecc------------CCEEEEEEccCCC--eEEE
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA-----LVHRFVGHS------------EGISDLAWSSDSH--YICS 81 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~--~l~~ 81 (312)
-.+.|+++.|...|.+|++|...|.|.+|.-+... ....+++|. +.|..+.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999655432 122244443 3477788876542 4444
Q ss_pred EcCCCeEEEEeCCCCc-----------------e-------------------ee----e--eeecccccEEEEEEecCC
Q 021459 82 ASDDRTLRIWDARTPF-----------------D-------------------CL----K--TLRGHSDFVFCVNFNPQS 119 (312)
Q Consensus 82 ~~~d~~v~~wd~~~~~-----------------~-------------------~~----~--~~~~~~~~v~~~~~~~~~ 119 (312)
...|++|++|.+.... . .+ . ....|.-.+.+++++.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 5689999999774210 0 00 0 012455667889999988
Q ss_pred CEEEEeecCCcEEEEEcCCCe---EEEEeeecC-----cCeEEEEEccCC-CEEEEeeCCCeEEEEeCCCCcee------
Q 021459 120 NLIVSGSFDESIRIWEVKTGK---CTRVIRAHS-----MPVTSVHFNRDG-SLIVSGSHDGTCKIWDAGEGACL------ 184 (312)
Q Consensus 120 ~~l~s~~~dg~i~~wd~~~~~---~~~~~~~~~-----~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~------ 184 (312)
..++++. |-.|.+|++.-.. .+..++.|. .-|++..|+|.. ..+.-.+..|.|++-|+|+...-
T Consensus 185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 8888764 6679999876322 223334443 237788999954 45666778899999999854321
Q ss_pred e---------EcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc-EEEEE
Q 021459 185 K---------TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK-FLKIY 230 (312)
Q Consensus 185 ~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~ 230 (312)
. .+....-..++.+.|+++|+++++-. --+|++||.+..+ +++++
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi 318 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceee
Confidence 0 01111223566788999999988654 3589999987653 45554
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.21 E-value=1.1e-07 Score=90.31 Aligned_cols=236 Identities=11% Similarity=0.103 Sum_probs=145.3
Q ss_pred EEEEccC-CCeEEEEcCCCeEEEEeCCCCceeeeeeec--c------------cccEEEEEEecCCCEEEEee-cCCcEE
Q 021459 69 DLAWSSD-SHYICSASDDRTLRIWDARTPFDCLKTLRG--H------------SDFVFCVNFNPQSNLIVSGS-FDESIR 132 (312)
Q Consensus 69 ~~~~~~~-~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~--~------------~~~v~~~~~~~~~~~l~s~~-~dg~i~ 132 (312)
.+++++. +.++++-...+.|.++|.... . +....+ . -..-..++++++++.|+.+. .+..|+
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGN-F-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCC-E-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 5788875 556666667788999997643 2 222211 1 11235788888888766655 456799
Q ss_pred EEEcCCCeEEEEeeec-----------------CcCeEEEEEcc-CCCEEEEeeCCCeEEEEeCCCCceeeEcccC----
Q 021459 133 IWEVKTGKCTRVIRAH-----------------SMPVTSVHFNR-DGSLIVSGSHDGTCKIWDAGEGACLKTLIDD---- 190 (312)
Q Consensus 133 ~wd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~---- 190 (312)
++|+.++.. ..+... -.....++++| ++.++++.+.++.|++||..++.... +...
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 999877653 222110 01235789999 56677777888999999987764321 1110
Q ss_pred ----------CCCcEEEEEECCCCCEEE-EEecCCeEEEEEcCCCcEEEEEEccC-------------C------ceeEE
Q 021459 191 ----------KDPAVSFAKFSPNGKFIL-VGTLDSTLKLWNYSAGKFLKIYTGHT-------------N------KKYCI 240 (312)
Q Consensus 191 ----------~~~~~~~~~~~~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~-------------~------~~~~~ 240 (312)
.......++++|+++.|. +-+.++.|++||+.++.......+.. . .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 001123467899998554 44667899999998765321111000 0 00011
Q ss_pred EEEEEccCCcEEEEeecCCeEEEEECCchheeecc-------------cCCccceEEEEEcCCCceEEEeeecCCeeEEE
Q 021459 241 TSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKL-------------DGHTDSVISVTCHPTENKIASAGLDGDRTVRV 307 (312)
Q Consensus 241 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~i 307 (312)
... ..+++.++++-+.+++|++||..++...... .+.-.....++++++|+.+++-+ ++++|++
T Consensus 808 Gva-vd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt--~Nn~Irv 884 (1057)
T PLN02919 808 GVL-CAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT--NNSLIRY 884 (1057)
T ss_pred eee-EeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC--CCCEEEE
Confidence 222 2356788899999999999999765443211 11123567899999998777655 5579999
Q ss_pred Eeec
Q 021459 308 WVQD 311 (312)
Q Consensus 308 w~~~ 311 (312)
|+.+
T Consensus 885 id~~ 888 (1057)
T PLN02919 885 LDLN 888 (1057)
T ss_pred EECC
Confidence 9863
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.20 E-value=1.7e-07 Score=87.44 Aligned_cols=274 Identities=13% Similarity=0.181 Sum_probs=163.0
Q ss_pred cceEEEEECCCCCEE--EEEeCCC--eEEEEeCCCcc---eEEEee-----eccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459 23 RAVSCVKFSNDGTLL--ASASLDK--TVIIWSASSLA---LVHRFV-----GHSEGISDLAWSSDSHYICSASDDRTLRI 90 (312)
Q Consensus 23 ~~v~~~~~s~~~~~l--~t~~~d~--~i~vw~~~~~~---~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 90 (312)
..+...+|.+..+.+ +++.... .|.+-...... .+..+. .....|.++.+.++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 456777887765543 3333322 23443322221 223332 23467999999999998989999999999
Q ss_pred E----eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC----C-------------------CeEEE
Q 021459 91 W----DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK----T-------------------GKCTR 143 (312)
Q Consensus 91 w----d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~----~-------------------~~~~~ 143 (312)
. +.... .+.....-+..|.+++|+||.+.++....++++.+.+.. . |+...
T Consensus 102 ~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeT 179 (928)
T PF04762_consen 102 VREDPDPDED--EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKET 179 (928)
T ss_pred EEccCCCCCc--eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccC
Confidence 8 54432 222233345689999999999999998888888766421 0 11111
Q ss_pred Eeee------------------------cCcCeEEEEEccCCCEEEEeeC------CCeEEEEeCCCCceeeEcccCCCC
Q 021459 144 VIRA------------------------HSMPVTSVHFNRDGSLIVSGSH------DGTCKIWDAGEGACLKTLIDDKDP 193 (312)
Q Consensus 144 ~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~~ 193 (312)
.|++ ....-..++|-.||++|++.+- -..+++|+- +|...... .....
T Consensus 180 QF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stS-E~v~g 257 (928)
T PF04762_consen 180 QFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTS-EPVDG 257 (928)
T ss_pred ccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEecc-ccCCC
Confidence 1100 1112346889999999998764 257899984 45543322 22233
Q ss_pred cEEEEEECCCCCEEEEEec---CCeEEEEEcCCCcEEEEEEccC-CceeEEEEEEEccCCcEEEEeecCCeEEEEECCch
Q 021459 194 AVSFAKFSPNGKFILVGTL---DSTLKLWNYSAGKFLKIYTGHT-NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK 269 (312)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 269 (312)
.-..++|.|+|+++|+... ...|.+|.. +|-....+.-.. .....+....+..++..||..-.|. |.+|-..+-
T Consensus 258 Le~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 258 LEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred ccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 3445789999999988753 346777763 443333333221 1112234445567899999877665 999988764
Q ss_pred he--eecccC-CccceEEEEEcCCC-ceEEEeeecCC
Q 021459 270 TM--IQKLDG-HTDSVISVTCHPTE-NKIASAGLDGD 302 (312)
Q Consensus 270 ~~--~~~~~~-h~~~v~~l~~~p~~-~~l~~~~~dgd 302 (312)
.- -+.+.- ....+..+.|||.. ..|...+.+|.
T Consensus 336 HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~ 372 (928)
T PF04762_consen 336 HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQ 372 (928)
T ss_pred EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCc
Confidence 32 233321 12345569999965 44665554443
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=5.7e-08 Score=83.20 Aligned_cols=191 Identities=14% Similarity=0.102 Sum_probs=119.2
Q ss_pred ceEEEEECCCCCE-EEEEeC---CCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-cCC--CeEEEEeCCCC
Q 021459 24 AVSCVKFSNDGTL-LASASL---DKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-SDD--RTLRIWDARTP 96 (312)
Q Consensus 24 ~v~~~~~s~~~~~-l~t~~~---d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d--~~v~~wd~~~~ 96 (312)
.+...+|+|||+. ++..+. +..|.++|+.+++... +....+......|+|||+.|+.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6678899999984 654333 3468888988776533 32344556678899999876643 333 46777787664
Q ss_pred ceeeeeeecccccEEEEEEecCCCEEEEeec-CC--cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC---
Q 021459 97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DE--SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD--- 170 (312)
Q Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 170 (312)
. .+.+..+........|+|||+.++..+. .+ .|++.|+.+++..+.... .. ....|+|+|+.++.....
T Consensus 268 ~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~ 342 (419)
T PRK04043 268 T--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNN 342 (419)
T ss_pred c--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCc
Confidence 2 2333333333345679999987766553 33 578888887776443321 11 124899999988766543
Q ss_pred ------CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC---eEEEEEcCC
Q 021459 171 ------GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS---TLKLWNYSA 223 (312)
Q Consensus 171 ------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~v~d~~~ 223 (312)
..|.+.|+.++.. +.+... .......|+|||+.++..+.++ .+.+.++..
T Consensus 343 ~~~~~~~~I~v~d~~~g~~-~~LT~~--~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 343 EFGKNTFNLYLISTNSDYI-RRLTAN--GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred ccCCCCcEEEEEECCCCCe-EECCCC--CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 2677888877653 333222 1223467999999888765432 355566644
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.16 E-value=5.4e-08 Score=80.80 Aligned_cols=277 Identities=19% Similarity=0.254 Sum_probs=169.4
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCC--------------
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDR-------------- 86 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------- 86 (312)
-.-++..++|||.|.+|++.... -|.+|....+..+.++. | ..|..+.|+|.+++|.+-+...
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 45688899999999999987665 48899888776554443 3 4688999999999999865433
Q ss_pred -eEEEEeCCCCceeeeeeeccccc--EE-EEEEecCCCEEEEeecCCcEEEEEcCCCeEE-EEeee-cCcCeEEEEEccC
Q 021459 87 -TLRIWDARTPFDCLKTLRGHSDF--VF-CVNFNPQSNLIVSGSFDESIRIWEVKTGKCT-RVIRA-HSMPVTSVHFNRD 160 (312)
Q Consensus 87 -~v~~wd~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~-~~~~v~~~~~~~~ 160 (312)
.+.+||..++ ..+..+.+.... .+ -+.|+-+.++++-. -...++++++ ++... ..+.. ....+....|+|.
T Consensus 108 n~~~vwd~~sg-~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 108 NNVFVWDIASG-MIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred CceeEEeccCc-eeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 4899999875 444444443333 33 46677777665543 2346899997 33211 11111 1245778888886
Q ss_pred CC--EEE-----EeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe-----------cCCeEEEEEcC
Q 021459 161 GS--LIV-----SGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT-----------LDSTLKLWNYS 222 (312)
Q Consensus 161 ~~--~l~-----~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~d~~i~v~d~~ 222 (312)
++ .|+ ..+..+.+++|.+..+..+.+..--. ..-..+.|.+.|++|++-. .+..+++++++
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 43 333 24567789999888666544321111 1123356888888776531 12457777776
Q ss_pred CCcEEEEEEccCCceeEEEEEEEccCCcE-EEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecC
Q 021459 223 AGKFLKIYTGHTNKKYCITSTFSVTNGKY-IVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDG 301 (312)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dg 301 (312)
. +.++......+.. ...++.+...++ +++|-.+-.+.++|++.. +...+. ++.=+.+-|+|.+++++.+|.|.
T Consensus 264 e-~~i~V~~~~~~pV--hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 264 E-RSIPVEKDLKDPV--HDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred c-cccceeccccccc--eeeeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccCcccEEEEecCCc
Confidence 3 3333322222222 233444333333 445567888999998765 333322 33346677888888888887765
Q ss_pred C-eeEEEEee
Q 021459 302 D-RTVRVWVQ 310 (312)
Q Consensus 302 d-~~v~iw~~ 310 (312)
- +.+.+|+.
T Consensus 338 l~gni~i~~~ 347 (561)
T COG5354 338 LQGNIEIFDP 347 (561)
T ss_pred cccceEEecc
Confidence 3 56666664
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.14 E-value=3.9e-08 Score=75.28 Aligned_cols=202 Identities=12% Similarity=0.079 Sum_probs=133.3
Q ss_pred EEEECCC-----CCEEEEEeCCCeEEEEeCCCcceE-EEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeCCCCcee
Q 021459 27 CVKFSND-----GTLLASASLDKTVIIWSASSLALV-HRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDARTPFDC 99 (312)
Q Consensus 27 ~~~~s~~-----~~~l~t~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~~~~~~~ 99 (312)
.+.|-|- -.+||.||..|...+|...+.+.. .....|...|+-+.=..+ ...+..++.|.++++.++....
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s-- 149 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS-- 149 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc--
Confidence 3455552 357899999999999988765432 222333333322111111 2345667888888888875431
Q ss_pred eeeeecccc--cEEEEEEecCCCEEEEeecCCcEEEEEcCCCe--EEEEee-ecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459 100 LKTLRGHSD--FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK--CTRVIR-AHSMPVTSVHFNRDGSLIVSGSHDGTCK 174 (312)
Q Consensus 100 ~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
.+ ...|.. .+.++++++|++++++.+....|..|.+.... ...... .....-.+..|+.....+|++..||.+.
T Consensus 150 ~~-~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~ 228 (344)
T KOG4532|consen 150 NK-FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCA 228 (344)
T ss_pred cc-ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEE
Confidence 11 112333 37889999999999999999999999886432 222122 2233346788999999999999999999
Q ss_pred EEeCCCCceeeE----cccCCCCcEEEEEECCCCC--EEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459 175 IWDAGEGACLKT----LIDDKDPAVSFAKFSPNGK--FILVGTLDSTLKLWNYSAGKFLKIYT 231 (312)
Q Consensus 175 iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~ 231 (312)
|||++....... ...++.+.+..+.|++-|. +|+..-.-+.+.+.|++++.....+.
T Consensus 229 I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 229 IYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred EEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 999987543221 2234677889999998653 55555556789999999987655543
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=4.2e-07 Score=77.91 Aligned_cols=183 Identities=12% Similarity=0.124 Sum_probs=114.9
Q ss_pred cEEEEEEecCCCE-EEEeecC---CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE-eeCC--CeEEEEeCCCC
Q 021459 109 FVFCVNFNPQSNL-IVSGSFD---ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS-GSHD--GTCKIWDAGEG 181 (312)
Q Consensus 109 ~v~~~~~~~~~~~-l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--~~i~iwd~~~~ 181 (312)
......|+||++. ++..+.+ ..|.++|+.+++...... .........|+|||+.++. .+.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778999999984 5544433 468899998887655433 3444566789999987654 3333 46777788766
Q ss_pred ceeeEcccCCCCcEEEEEECCCCCEEEEEecC-C--eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC
Q 021459 182 ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLD-S--TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED 258 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 258 (312)
.. ..+... ........|+|||+.|+..+.. + .|++.|+.+++..+...... .. . ...++|+.|+..+..
T Consensus 268 ~~-~~LT~~-~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~--~-~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 268 TL-TQITNY-PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NN--S-SVSTYKNYIVYSSRE 339 (419)
T ss_pred cE-EEcccC-CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cC--c-eECCCCCEEEEEEcC
Confidence 53 333222 2222334699999988776532 2 68888888777644432111 11 1 334778877665443
Q ss_pred ---------CeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCC
Q 021459 259 ---------NCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGD 302 (312)
Q Consensus 259 ---------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd 302 (312)
..|.+.|+..+.. ..+.... ......|+|+|+.++..+.++.
T Consensus 340 ~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 340 TNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred CCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEccCC
Confidence 3688888877654 3333221 2235789999998887776654
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.12 E-value=6.3e-08 Score=74.17 Aligned_cols=253 Identities=12% Similarity=0.029 Sum_probs=145.8
Q ss_pred eCCCeEEEEeCCCcc--eEEEeeeccCCEEEEEEcc-----CCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEE
Q 021459 41 SLDKTVIIWSASSLA--LVHRFVGHSEGISDLAWSS-----DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCV 113 (312)
Q Consensus 41 ~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~ 113 (312)
+....+.+|+..+.. .+..+ ..+.|.| .-.+|+.|+..|...+|...+....++....|...|.-+
T Consensus 49 ~~t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~ 121 (344)
T KOG4532|consen 49 SKTISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV 121 (344)
T ss_pred cceeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhh
Confidence 344567777765433 22222 2244444 345899999999999999876433333333333322111
Q ss_pred EEecC-CCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCC-c-eeeEcccC
Q 021459 114 NFNPQ-SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG-A-CLKTLIDD 190 (312)
Q Consensus 114 ~~~~~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~-~~~~~~~~ 190 (312)
.-..+ ...+..++.|.++++.++.-+..............+++++++++++++.+....|..|.+... + ..+.....
T Consensus 122 ~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~ 201 (344)
T KOG4532|consen 122 KRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP 201 (344)
T ss_pred hhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc
Confidence 11111 123566788888888887654332222222234788999999999999999999999877643 2 22222222
Q ss_pred CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc--cCCceeEEEEEEEccCC--cEEEEeecCCeEEEEEC
Q 021459 191 KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG--HTNKKYCITSTFSVTNG--KYIVSGSEDNCVYVWDL 266 (312)
Q Consensus 191 ~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~iwd~ 266 (312)
....-.+..|+.....+|++..||++.|||++.......... .+.+.-.+..+.+.+.| ++|.-.-.-+.+++.|+
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~ 281 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDT 281 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEc
Confidence 223344567999999999999999999999986543221111 01111123333222222 34444455678999999
Q ss_pred Cchheeeccc-------CCc-cceEEEEEcCCCceEEEeeec
Q 021459 267 QQKTMIQKLD-------GHT-DSVISVTCHPTENKIASAGLD 300 (312)
Q Consensus 267 ~~~~~~~~~~-------~h~-~~v~~l~~~p~~~~l~~~~~d 300 (312)
++....+.+. .|. ..+..-.|+.++...-+.+.+
T Consensus 282 R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 282 RNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 8875544332 232 336666677666555555443
No 290
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.11 E-value=4.8e-07 Score=71.95 Aligned_cols=218 Identities=20% Similarity=0.174 Sum_probs=132.9
Q ss_pred CCeEEEEeCCCcceEEEeeeccCCEEEEE--EccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCC
Q 021459 43 DKTVIIWSASSLALVHRFVGHSEGISDLA--WSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSN 120 (312)
Q Consensus 43 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 120 (312)
+|.|..+|..+++.+.+... ........ ..+++..+++++.++.+..||..++.. +-.... .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKV-LWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEE-EEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCE-EEEeec-ccccccee-eeccc
Confidence 68899999999988877653 11122222 233566777778999999999988743 322221 11111111 22355
Q ss_pred EEEEeecCCcEEEEEcCCCeEEEEe-eecC--c-CeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCC---
Q 021459 121 LIVSGSFDESIRIWEVKTGKCTRVI-RAHS--M-PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDP--- 193 (312)
Q Consensus 121 ~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~--~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--- 193 (312)
.++.+..++.|..+|..+|+.+... .... . .........++..++.+..++.+..+|+.+|+.+-........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 6677778889999999999887763 3221 1 1122233334778888888999999999999886555332211
Q ss_pred c------EEEEEECCCCCEEEEEecCCe-EEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459 194 A------VSFAKFSPNGKFILVGTLDST-LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDL 266 (312)
Q Consensus 194 ~------~~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 266 (312)
. ........++ .+.+++.++. +.+ |..+++.+- +..... ...... ..+..|+.++.+|.|..||+
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w--~~~~~~---~~~~~~-~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLW--SKPISG---IYSLPS-VDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEE--EECSS----ECECEE-CCCTEEEEEETTTEEEEEET
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEE--EecCCC---ccCCce-eeCCEEEEEeCCCEEEEEEC
Confidence 1 1122223344 6777777775 555 999998553 222222 111122 45667777779999999999
Q ss_pred Cchhee
Q 021459 267 QQKTMI 272 (312)
Q Consensus 267 ~~~~~~ 272 (312)
++++..
T Consensus 230 ~tG~~~ 235 (238)
T PF13360_consen 230 KTGKVV 235 (238)
T ss_dssp TTTEEE
T ss_pred CCCCEE
Confidence 988654
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.10 E-value=2.9e-09 Score=85.59 Aligned_cols=162 Identities=18% Similarity=0.280 Sum_probs=107.4
Q ss_pred EEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee--cccccEEEEEEecCCCEEEEeecCCcE---EEEEcCCCeE
Q 021459 67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR--GHSDFVFCVNFNPQSNLIVSGSFDESI---RIWEVKTGKC 141 (312)
Q Consensus 67 v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i---~~wd~~~~~~ 141 (312)
...+..++.++++|.+..+....+++.....+..+... .-...-.++.+..+......+...|.+ .+|....+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 44456778889999988888766666543322111111 111222344444444544444444444 4444444433
Q ss_pred EEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEc
Q 021459 142 TRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNY 221 (312)
Q Consensus 142 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~ 221 (312)
..+-+|-.-++.++++||+++++++..|..|++-.......+..+...|..-++.++.-++ ..|++++.|++|++||+
T Consensus 145 -~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 145 -EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred -chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence 3445788889999999999999999999999997776666666666655555666666554 56899999999999999
Q ss_pred CCCcEEEEE
Q 021459 222 SAGKFLKIY 230 (312)
Q Consensus 222 ~~~~~~~~~ 230 (312)
.+++.+..+
T Consensus 223 ~sgk~L~t~ 231 (390)
T KOG3914|consen 223 TSGKLLDTC 231 (390)
T ss_pred ccCCccccc
Confidence 999877554
No 292
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.10 E-value=6.2e-07 Score=69.66 Aligned_cols=231 Identities=16% Similarity=0.249 Sum_probs=127.8
Q ss_pred EEECCCCCEEEEEeCCCeEEEEeCCCc--ceEEEeeeccC---CEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459 28 VKFSNDGTLLASASLDKTVIIWSASSL--ALVHRFVGHSE---GISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT 102 (312)
Q Consensus 28 ~~~s~~~~~l~t~~~d~~i~vw~~~~~--~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~ 102 (312)
++.+++|++||.- .|..|.+-..... ..+.+..-.++ .=..++|+||+.+||.+...|+|+++|+... + +..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~-lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-E-LFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-e-eEE
Confidence 5677899988876 5667888765432 22233332222 2357999999999999999999999998642 1 111
Q ss_pred eec-------ccccEEEEEEecC------CCEEEEeecCCcEEEEEcCCC-----eEEEEee--e-cCcCeEEEEEccCC
Q 021459 103 LRG-------HSDFVFCVNFNPQ------SNLIVSGSFDESIRIWEVKTG-----KCTRVIR--A-HSMPVTSVHFNRDG 161 (312)
Q Consensus 103 ~~~-------~~~~v~~~~~~~~------~~~l~s~~~dg~i~~wd~~~~-----~~~~~~~--~-~~~~v~~~~~~~~~ 161 (312)
+.. -...|..+.|-+. ...|+.-..+|.++-|-+..+ +....+. . ....|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 111 1234555555432 235777788888887765322 2222332 2 35579999999998
Q ss_pred CEEEEeeCCCe-----------EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEE
Q 021459 162 SLIVSGSHDGT-----------CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY 230 (312)
Q Consensus 162 ~~l~~~~~d~~-----------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 230 (312)
++|++|+.... +..|.+-++. +....+ .+.+...-...... .+|.+-+ .+.+
T Consensus 160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~----------Pyyk~v-~~~~~~~~~~~~~~---~~~~~~~---~~~f 222 (282)
T PF15492_consen 160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDS----------PYYKQV-TSSEDDITASSKRR---GLLRIPS---FKFF 222 (282)
T ss_pred CEEEEeccCCCCCccccccccCceEEEEcCCC----------CcEEEc-cccCcccccccccc---ceeeccc---eeee
Confidence 88887765432 1112111110 001000 01001110011111 1222211 1222
Q ss_pred EccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCC
Q 021459 231 TGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGH 278 (312)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h 278 (312)
.........+..+...|++.+||+...+|.|.+|++.+-.+......+
T Consensus 223 s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 223 SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 222222223333445689999999999999999999887666655443
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=6.8e-11 Score=103.80 Aligned_cols=201 Identities=18% Similarity=0.309 Sum_probs=144.5
Q ss_pred eeceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCC--eEE
Q 021459 12 YRHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDR--TLR 89 (312)
Q Consensus 12 ~~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~v~ 89 (312)
++.++++..|+..-+|++|+-+.+.|+.|+-.|.|+++++.+|.......+|..+|+-+.-+.+|..+++.+.-. -..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 455677888999999999999999999999999999999999999999999999999999999998776654433 467
Q ss_pred EEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee----cCcCeEEEEEccCCCEEE
Q 021459 90 IWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA----HSMPVTSVHFNRDGSLIV 165 (312)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~ 165 (312)
+|++........++. .-.++.|+.....-+.|.......+||+.++..+.++-. ....-++..|+|+..+++
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 898865433333332 235677876543334444445688999999876554211 112236788999988876
Q ss_pred EeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459 166 SGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK 228 (312)
Q Consensus 166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 228 (312)
.|| .+||.+..+.++.+-.-. ....-.|+|+|..++.-+ .|||+++-+.++
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEeec-----hhhhhHHHHHHh
Confidence 455 689999887666552211 122235899999888754 489988766544
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.07 E-value=4.3e-09 Score=84.63 Aligned_cols=159 Identities=20% Similarity=0.308 Sum_probs=108.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCcce---EEEeeeccCCEEEEEEccCCCeEEEEcCCC---eEEEEeCCCCcee
Q 021459 26 SCVKFSNDGTLLASASLDKTVIIWSASSLAL---VHRFVGHSEGISDLAWSSDSHYICSASDDR---TLRIWDARTPFDC 99 (312)
Q Consensus 26 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~~wd~~~~~~~ 99 (312)
..+..+|++++||.+..++...++++..... +.....-...-+.+.+..+......+..-| .+.+|.... ..
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~~ 143 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--GR 143 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--cC
Confidence 3455778899999888877766666543322 111112223334555655555554444444 444454432 23
Q ss_pred eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEe-eecCcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459 100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI-RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178 (312)
Q Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (312)
...+-||-..+..++++||+++++++..|..|++-....-..+..+ -+|..-|..++.-++ ..|++++.|+++++||.
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence 4445689999999999999999999999999998766554444444 368888999988754 56899999999999999
Q ss_pred CCCceeeEc
Q 021459 179 GEGACLKTL 187 (312)
Q Consensus 179 ~~~~~~~~~ 187 (312)
.+++.+.++
T Consensus 223 ~sgk~L~t~ 231 (390)
T KOG3914|consen 223 TSGKLLDTC 231 (390)
T ss_pred ccCCccccc
Confidence 999887554
No 295
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=4.5e-09 Score=85.83 Aligned_cols=214 Identities=19% Similarity=0.226 Sum_probs=150.2
Q ss_pred eceeeecccccceEEEEECCCCCEEEEEeC-CCeEEEEeCCCcceEEEeeec--cCCEEEEEEc-cCC---CeEE-EEcC
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASL-DKTVIIWSASSLALVHRFVGH--SEGISDLAWS-SDS---HYIC-SASD 84 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~-d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~-~~~---~~l~-~~~~ 84 (312)
...+.+..|-..|.+++.+.++.++.|.+. |+.++++|+++..+...++.. ++. +.|. ..| ..|+ +...
T Consensus 44 EfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---a~wv~skGd~~s~IAVs~~~ 120 (558)
T KOG0882|consen 44 EFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---AEWVTSKGDKISLIAVSLFK 120 (558)
T ss_pred eehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc---eEEecCCCCeeeeEEeeccc
Confidence 344556778889999999999999999777 999999999887665443321 222 2222 223 1333 3346
Q ss_pred CCeEEEEeCCCCc-eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC------CeEE---------EEeeec
Q 021459 85 DRTLRIWDARTPF-DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT------GKCT---------RVIRAH 148 (312)
Q Consensus 85 d~~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~------~~~~---------~~~~~~ 148 (312)
++.+.++|-.... +....-+-|..+|.++.+++-+..+++....|-|.-|.... .+.. ..+...
T Consensus 121 sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~ 200 (558)
T KOG0882|consen 121 SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA 200 (558)
T ss_pred CCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccc
Confidence 7899999976543 22333445899999999999999999999999999998762 1110 011112
Q ss_pred CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccC--------------------------------CCCcEE
Q 021459 149 SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDD--------------------------------KDPAVS 196 (312)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------------------------------~~~~~~ 196 (312)
+....++.|+|++..+.+-+.|..|++++..++...+.+... ......
T Consensus 201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~ 280 (558)
T KOG0882|consen 201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGT 280 (558)
T ss_pred ccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccc
Confidence 334678999999999999999999999999887654333110 011123
Q ss_pred EEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEE
Q 021459 197 FAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIY 230 (312)
Q Consensus 197 ~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 230 (312)
.+.|+..|++|+.++.=| |+++++.+++..+++
T Consensus 281 ~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 281 NAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred eeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 356999999999987664 899999988877665
No 296
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=1.2e-07 Score=82.71 Aligned_cols=243 Identities=14% Similarity=0.138 Sum_probs=162.4
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCC------------CeEEEEcCCCeE
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDS------------HYICSASDDRTL 88 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~v 88 (312)
|...-.++.|+|.| +||-|+- ..|.|-|..+.+.+..+..|+..|+++.|.|.. -.||++...|.|
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 33446678899877 5555543 578888999999999999999999999997631 256777778999
Q ss_pred EEEeCCCCceeeeeeecccccEEEEEEec---CC-CEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCE
Q 021459 89 RIWDARTPFDCLKTLRGHSDFVFCVNFNP---QS-NLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSL 163 (312)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 163 (312)
.+||.... ..+..+..|.+.+..++|-+ +. ..|++-....+|.+|+..+|+..-..........|+.+.| |.+.
T Consensus 92 il~d~~~~-s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh 170 (1062)
T KOG1912|consen 92 ILVDFVLA-SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH 170 (1062)
T ss_pred EEEEehhh-hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence 99998764 23444566788888888866 33 4677777778999999999987766555555677888888 5566
Q ss_pred EEEeeCCCeEEEEeCCC-Cc-----eeeEcccCCC-------------------CcE------EEEEECCCCCEEEEEec
Q 021459 164 IVSGSHDGTCKIWDAGE-GA-----CLKTLIDDKD-------------------PAV------SFAKFSPNGKFILVGTL 212 (312)
Q Consensus 164 l~~~~~d~~i~iwd~~~-~~-----~~~~~~~~~~-------------------~~~------~~~~~~~~~~~l~~~~~ 212 (312)
+..-+..|.+.+-+.-. .+ ....+..++. ... ...+|+|.-+.++....
T Consensus 171 ~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~ 250 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF 250 (1062)
T ss_pred EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe
Confidence 66666667666654321 10 0011111100 000 01346777666666667
Q ss_pred CCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459 213 DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQ 267 (312)
Q Consensus 213 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 267 (312)
...+.++|++-...+....-..+....+.... .++.+.|.++..||.+.+|-.+
T Consensus 251 prellv~dle~~~~l~vvpier~~akfv~vlP-~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 251 PRELLVFDLEYECCLAVVPIERGGAKFVDVLP-DPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred ccceEEEcchhhceeEEEEeccCCcceeEecc-CCCcceEEEEecCCeEEEEEee
Confidence 88899999987776665543333222233222 2445689999999999999654
No 297
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=4.8e-09 Score=85.66 Aligned_cols=207 Identities=23% Similarity=0.286 Sum_probs=141.8
Q ss_pred ccccceEEEEECCCCCEEEEEeCCCeEEEEeCCC---cceEEEeeeccCCEEEEEEccCCCeEEEEcC-CCeEEEEeCCC
Q 021459 20 AHSRAVSCVKFSNDGTLLASASLDKTVIIWSASS---LALVHRFVGHSEGISDLAWSSDSHYICSASD-DRTLRIWDART 95 (312)
Q Consensus 20 ~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~v~~wd~~~ 95 (312)
-|.+.|+-+.. ...+++.+++.||.++.|--.. .+.+..+..|...|.+++.+-++.++++.+. |..++++|+++
T Consensus 7 mhrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 37788887654 3578999999999999996543 2344456678888899999999999999777 99999999875
Q ss_pred Cceeeee--eecccccEEEEEEecCC--CEEE-EeecCCcEEEEEcCCCeE--EEEeeecCcCeEEEEEccCCCEEEEee
Q 021459 96 PFDCLKT--LRGHSDFVFCVNFNPQS--NLIV-SGSFDESIRIWEVKTGKC--TRVIRAHSMPVTSVHFNRDGSLIVSGS 168 (312)
Q Consensus 96 ~~~~~~~--~~~~~~~v~~~~~~~~~--~~l~-s~~~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
- ..+.. +.--.+.+.+ ..++.. ..++ +.-.+|.|.++|-....+ ...-+-|..+|..+.+.+-+..+++..
T Consensus 86 ~-DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 86 F-DMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred c-chhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence 3 21111 1111222221 122211 1233 334568899999765443 233346889999999999999999999
Q ss_pred CCCeEEEEeCCC------CceeeEcc--------cCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE
Q 021459 169 HDGTCKIWDAGE------GACLKTLI--------DDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI 229 (312)
Q Consensus 169 ~d~~i~iwd~~~------~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 229 (312)
..|.|.-|.... ......+. .........+.++|++..+.+-+.|..|+++++.+++.++.
T Consensus 164 ~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 164 ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 999999998763 11110110 01123345677999999999999999999999998876543
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.04 E-value=4.4e-06 Score=66.76 Aligned_cols=215 Identities=18% Similarity=0.161 Sum_probs=132.1
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEc-cCCCeEEEEcCCCeEEEEeCCCCce-eeeee
Q 021459 27 CVKFSN-DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWS-SDSHYICSASDDRTLRIWDARTPFD-CLKTL 103 (312)
Q Consensus 27 ~~~~s~-~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~v~~wd~~~~~~-~~~~~ 103 (312)
++.|.+ ++.++++--..+.|..|+..+++... +. ......+++. +++.+ +.+...+ +.++|..+... .+...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~--~~~~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-ID--LPGPNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EE--SSSEEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Ee--cCCCceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEEeec
Confidence 578888 66777776678999999988775532 22 1226778888 56554 4444444 55668776422 12222
Q ss_pred e--c-ccccEEEEEEecCCCEEEEeecC--------CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEE-EeeCCC
Q 021459 104 R--G-HSDFVFCVNFNPQSNLIVSGSFD--------ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIV-SGSHDG 171 (312)
Q Consensus 104 ~--~-~~~~v~~~~~~~~~~~l~s~~~d--------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~ 171 (312)
. . .......+++.|+|++.++.... |.|..++.. ++....... -...+.++|+|+++.|+ +-+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEECCcchheeecccccc
Confidence 1 1 23456789999999977765543 457777766 554433332 34468999999998765 566778
Q ss_pred eEEEEeCCCCce----eeEcccCCC--CcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEE
Q 021459 172 TCKIWDAGEGAC----LKTLIDDKD--PAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFS 245 (312)
Q Consensus 172 ~i~iwd~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (312)
.|..+++..... .+.+..... .....++++.+|++.++....+.|.++|.+ |+.+..+...... ...+++.
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~--~t~~~fg 233 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPR--PTNCAFG 233 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSS--EEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCC--EEEEEEE
Confidence 888888753221 111211111 235667899999988888889999999976 8877777655332 3333443
Q ss_pred ccCCcE
Q 021459 246 VTNGKY 251 (312)
Q Consensus 246 ~~~~~~ 251 (312)
.++.+.
T Consensus 234 g~~~~~ 239 (246)
T PF08450_consen 234 GPDGKT 239 (246)
T ss_dssp STTSSE
T ss_pred CCCCCE
Confidence 344333
No 299
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.03 E-value=3.9e-06 Score=67.13 Aligned_cols=204 Identities=14% Similarity=0.228 Sum_probs=135.7
Q ss_pred eEEEEECC-CCCEEEEEeCCCe-EEEEeCCCcceEEEeeeccCCEE--EEEEccCCCeEEEEcC-----CCeEEEEeCCC
Q 021459 25 VSCVKFSN-DGTLLASASLDKT-VIIWSASSLALVHRFVGHSEGIS--DLAWSSDSHYICSASD-----DRTLRIWDART 95 (312)
Q Consensus 25 v~~~~~s~-~~~~l~t~~~d~~-i~vw~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~~~-----d~~v~~wd~~~ 95 (312)
...++.+| +...++.+..-|. ..+||..+++....+....+.-. .-+|++||++|++.-. .|.|-|||...
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 45678888 5566777877765 57899999888776643322211 3579999999998633 47899999986
Q ss_pred CceeeeeeecccccEEEEEEecCCCEEEEeec------------------CCcEEEEEcCCCeEEEEee----ecCcCeE
Q 021459 96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF------------------DESIRIWEVKTGKCTRVIR----AHSMPVT 153 (312)
Q Consensus 96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------------------dg~i~~wd~~~~~~~~~~~----~~~~~v~ 153 (312)
....+..+..|.-.-..+.+.||++.|+.+.. +.++..-|..+|+.+.... -|+..+.
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 56666666655433445778899977766532 2345566777887766532 3677899
Q ss_pred EEEEccCCCEEEEeeCCCe-------EEEEeCCCCceeeEcc------cCCCCcEEEEEECCCCCEEEEEe-cCCeEEEE
Q 021459 154 SVHFNRDGSLIVSGSHDGT-------CKIWDAGEGACLKTLI------DDKDPAVSFAKFSPNGKFILVGT-LDSTLKLW 219 (312)
Q Consensus 154 ~~~~~~~~~~l~~~~~d~~-------i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~ 219 (312)
.+++.++|..++..-..|. +-+++.... +..+. .....-+..+++++++.++++.+ .-+.+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 9999999987666554442 334433221 11111 11123466788999998886665 45789999
Q ss_pred EcCCCcEEEEE
Q 021459 220 NYSAGKFLKIY 230 (312)
Q Consensus 220 d~~~~~~~~~~ 230 (312)
|..+++.+...
T Consensus 245 d~~tg~~~~~~ 255 (305)
T PF07433_consen 245 DAATGRLLGSV 255 (305)
T ss_pred ECCCCCEeecc
Confidence 99999887654
No 300
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.03 E-value=7.8e-07 Score=76.26 Aligned_cols=258 Identities=12% Similarity=0.070 Sum_probs=146.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeeccccc----
Q 021459 34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDF---- 109 (312)
Q Consensus 34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~---- 109 (312)
+..++.++.++.+..+|..+++.+.+.........+... .+..++.+..++.+..+|..++...-+........
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 445667778899999999999887765533221111111 24466677788999999998865432221110000
Q ss_pred EEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCc-------CeEEEEEcc--CCCEEEEeeCCCeEEEEeCCC
Q 021459 110 VFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSM-------PVTSVHFNR--DGSLIVSGSHDGTCKIWDAGE 180 (312)
Q Consensus 110 v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~ 180 (312)
..+... .+..++.++.+|.+...|..+|+..-..+.... ....+..+| .+..++.++.+|.+..+|..+
T Consensus 198 ~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 198 ESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS 275 (394)
T ss_pred CCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC
Confidence 001111 124566777889999999988876543321100 000111122 244667777889999999998
Q ss_pred CceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCe
Q 021459 181 GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC 260 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 260 (312)
++.+-+.... .... ....+..+.+++.+|.+..+|..+++.+-......... .. .... .+..++.++.+|.
T Consensus 276 G~~~W~~~~~--~~~~---~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~--~~-sp~v-~~g~l~v~~~~G~ 346 (394)
T PRK11138 276 GQIVWKREYG--SVND---FAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL--LT-APVL-YNGYLVVGDSEGY 346 (394)
T ss_pred CCEEEeecCC--CccC---cEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc--cc-CCEE-ECCEEEEEeCCCE
Confidence 8765332111 1111 11245677778889999999999887643322111110 00 0001 2456788899999
Q ss_pred EEEEECCchheeecccCCccceEE-EEEcCCCceEEEeeecCCeeEEEE
Q 021459 261 VYVWDLQQKTMIQKLDGHTDSVIS-VTCHPTENKIASAGLDGDRTVRVW 308 (312)
Q Consensus 261 i~iwd~~~~~~~~~~~~h~~~v~~-l~~~p~~~~l~~~~~dgd~~v~iw 308 (312)
|.+.|..+++.+.+.+-....+.+ -.. .+..|..++.|| .|..+
T Consensus 347 l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G--~l~~~ 391 (394)
T PRK11138 347 LHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDG--TVYAI 391 (394)
T ss_pred EEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCc--eEEEE
Confidence 999999998877665432222221 112 345777777665 55544
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.01 E-value=1.4e-08 Score=77.38 Aligned_cols=152 Identities=17% Similarity=0.263 Sum_probs=97.4
Q ss_pred EccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-----CCcEEEEEcCCCeEEEEee
Q 021459 72 WSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-----DESIRIWEVKTGKCTRVIR 146 (312)
Q Consensus 72 ~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-----dg~i~~wd~~~~~~~~~~~ 146 (312)
.+-.++.++++..||.+-+.+.+...............-.+.++-..++.+.++.. -+..+.|+++..+....-.
T Consensus 97 ~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 97 CTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred ccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccc
Confidence 33456678899999999999876532221111111111112222233455544432 2456677776554333222
Q ss_pred ecCcCeEEEEEccC-CCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC-CCCEEEEEecCCeEEEEEcCC
Q 021459 147 AHSMPVTSVHFNRD-GSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP-NGKFILVGTLDSTLKLWNYSA 223 (312)
Q Consensus 147 ~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~ 223 (312)
.....|.+++-+|. ..++++|+.||.+-+||.++......+...++..+.-+.|+| ++..|++++.||.+..||..+
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 22334888888884 456778899999999999988766666666677777777887 567899999999999999654
No 302
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.01 E-value=9.7e-07 Score=73.10 Aligned_cols=145 Identities=17% Similarity=0.169 Sum_probs=112.2
Q ss_pred cccccceEEEEECCCCCEEEEEeCCC-eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc
Q 021459 19 TAHSRAVSCVKFSNDGTLLASASLDK-TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF 97 (312)
Q Consensus 19 ~~h~~~v~~~~~s~~~~~l~t~~~d~-~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~ 97 (312)
.+|...|.-..+.-+++-++.|..|| .+-|++..+++. .++...-+.|.++..+++|++++.+.....+.+.|+.++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 46788899889988888899999998 899999887765 4566667889999999999999999888889899998864
Q ss_pred eeeeeeecccccEEEEEEecCCCEEEEeecCC----cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEE
Q 021459 98 DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE----SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVS 166 (312)
Q Consensus 98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
..+ .-+...+.|....|+|++++++-+-.+| .|+++|+..++....... ...=.+-+|.|++++|.-
T Consensus 435 v~~-idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 435 VRL-IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred eeE-ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cccccCcccCCCCcEEEE
Confidence 322 2233456789999999999999877665 589999998876544322 222245578889887653
No 303
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.99 E-value=2.4e-08 Score=88.35 Aligned_cols=182 Identities=15% Similarity=0.274 Sum_probs=131.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEE
Q 021459 34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCV 113 (312)
Q Consensus 34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~ 113 (312)
+..++-|+-...+..+|..+.+......-....|.-++ .+++++++|...|+|.+-|.++ .+.+.++..|.+.+..+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNS-FETIHTFDAHSGSISDF 223 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCc-Cceeeeeeccccceeee
Confidence 34566666667777788887766554443344454444 3678999999999999999877 57788999999988765
Q ss_pred EEecCCCEEEEeec---------CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccC-CCEEEEeeCCCeEEEEeC---CC
Q 021459 114 NFNPQSNLIVSGSF---------DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRD-GSLIVSGSHDGTCKIWDA---GE 180 (312)
Q Consensus 114 ~~~~~~~~l~s~~~---------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~---~~ 180 (312)
+-.|+.|+++|. |..|+|||++..+.+..++.+..+ .-+.|+|. ...+++++..|...+-|. .+
T Consensus 224 --Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 --DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred --eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 556899999986 456899999987766655544444 34567773 356888899999999983 33
Q ss_pred CceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEc
Q 021459 181 GACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNY 221 (312)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~ 221 (312)
...-........+.+....++++++.++.|..+|.|.+|.-
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 22222222233444777889999999999999999999973
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.97 E-value=8e-07 Score=69.05 Aligned_cols=195 Identities=15% Similarity=0.200 Sum_probs=110.7
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeee-------ccCCEEEEEEccCC------CeEEEEcCCCeEEEEe
Q 021459 26 SCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVG-------HSEGISDLAWSSDS------HYICSASDDRTLRIWD 92 (312)
Q Consensus 26 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-------~~~~v~~~~~~~~~------~~l~~~~~d~~v~~wd 92 (312)
..++||||+.+||.+...|+|+++|+...++ ..+.. -..+|..+.|.+.. ..|++-..+|.++-|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 3589999999999999999999999876433 22221 13467777775432 2455666788777665
Q ss_pred CCC----Cceeeeee---ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEE---ccCCC
Q 021459 93 ART----PFDCLKTL---RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHF---NRDGS 162 (312)
Q Consensus 93 ~~~----~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~---~~~~~ 162 (312)
+.. +.+....+ ..+...|.++.|+|..++|+.|+.... +.+. -++....+++-.. .|..+
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk 195 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYK 195 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEE
Confidence 421 11222222 124567999999999998888775432 0000 0001111111111 11111
Q ss_pred EEEEeeCCC------eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc
Q 021459 163 LIVSGSHDG------TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH 233 (312)
Q Consensus 163 ~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~ 233 (312)
. ++...|+ +..+|.+.+.... .........+..+..+|||..||+...+|.|.+|++.+-+..+.+..+
T Consensus 196 ~-v~~~~~~~~~~~~~~~~~~~~~~~~f-s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 196 Q-VTSSEDDITASSKRRGLLRIPSFKFF-SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred E-ccccCccccccccccceeeccceeee-eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 1 1111111 1122322221111 112233455677889999999999999999999999877665555433
No 305
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=3.5e-09 Score=83.66 Aligned_cols=148 Identities=16% Similarity=0.276 Sum_probs=110.7
Q ss_pred EEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc----eeeeeeecccccEEEE
Q 021459 38 ASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF----DCLKTLRGHSDFVFCV 113 (312)
Q Consensus 38 ~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~----~~~~~~~~~~~~v~~~ 113 (312)
++.|.+..+-+-+.+++-... + ..++.|.++.|...+++++.|+.+|.|..+|++... .+...+ -|+..|.++
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-F-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccccc-c-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence 445555666676777664322 2 245678888999889999999999999999998642 222233 378888888
Q ss_pred EEec-CCCEEEEeecCCcEEEEEcCCCeE---EEEeeecCcC--eEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEc
Q 021459 114 NFNP-QSNLIVSGSFDESIRIWEVKTGKC---TRVIRAHSMP--VTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL 187 (312)
Q Consensus 114 ~~~~-~~~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (312)
..-. ++.+|++.+.+|.|++||++.-++ +..+++|-.. -.-+...+.+..+++++.|...++|.+..+..+.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 7655 678899999999999999987666 7778887543 223445666778889999999999999999887665
Q ss_pred c
Q 021459 188 I 188 (312)
Q Consensus 188 ~ 188 (312)
.
T Consensus 385 p 385 (425)
T KOG2695|consen 385 P 385 (425)
T ss_pred C
Confidence 3
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.96 E-value=3.4e-09 Score=58.22 Aligned_cols=37 Identities=35% Similarity=0.673 Sum_probs=35.0
Q ss_pred ceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEe
Q 021459 14 HFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWS 50 (312)
Q Consensus 14 ~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~ 50 (312)
...++.+|.++|++++|+|++++|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4678899999999999999999999999999999997
No 307
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.91 E-value=2.2e-06 Score=68.17 Aligned_cols=189 Identities=20% Similarity=0.138 Sum_probs=119.3
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeeccc---c
Q 021459 32 NDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHS---D 108 (312)
Q Consensus 32 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~---~ 108 (312)
+++..+++++.++.+..||..+++.+.+... ...+.... ..++..++.+..++.++.+|..++...-....... .
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 3567777778999999999999998877664 22221111 22455566666888999999888754333122110 1
Q ss_pred cEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcC----------eEEEEEccCCCEEEEeeCCCe-EEEEe
Q 021459 109 FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMP----------VTSVHFNRDGSLIVSGSHDGT-CKIWD 177 (312)
Q Consensus 109 ~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~d~~-i~iwd 177 (312)
.........+++.++.+..++.|..+|+++|+.+-.......+ +..-....++ .++.++.++. +.+ |
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d 189 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-D 189 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-E
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-E
Confidence 1222233334778888888999999999999987766553322 1122222345 6666666775 555 9
Q ss_pred CCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459 178 AGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK 228 (312)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 228 (312)
..+++..-+.. . ..... ....++..|++++.++.|..||+.+++.+-
T Consensus 190 ~~tg~~~w~~~--~-~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 190 LATGEKLWSKP--I-SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTTTEEEEEEC--S-S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCCCEEEEec--C-CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 99987543221 1 11211 145677788888899999999999998653
No 308
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.5e-07 Score=76.11 Aligned_cols=245 Identities=16% Similarity=0.164 Sum_probs=135.4
Q ss_pred eeecccccceEEEEECCCCC-EEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccC-CCeEEEEcCCCeEEEEeC
Q 021459 16 KTLTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSD-SHYICSASDDRTLRIWDA 93 (312)
Q Consensus 16 ~~~~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~~wd~ 93 (312)
+.+-.|...|..++|||..+ ++..++.+..|+|.|+++......+..+ ..+++++|..+ .++|..|...|.|.+||+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 35667889999999999777 7888999999999999998888888777 78999999986 468899999999999999
Q ss_pred CCCceeeeeeec--ccccEEEEEEec------CCCEEEEeecCCcEEEEEcCC--CeEEEEeee-cCcCeEEEEEccCCC
Q 021459 94 RTPFDCLKTLRG--HSDFVFCVNFNP------QSNLIVSGSFDESIRIWEVKT--GKCTRVIRA-HSMPVTSVHFNRDGS 162 (312)
Q Consensus 94 ~~~~~~~~~~~~--~~~~v~~~~~~~------~~~~l~s~~~dg~i~~wd~~~--~~~~~~~~~-~~~~v~~~~~~~~~~ 162 (312)
+.+...+..+.+ ...+|..++.-+ .+.+++....+ ...|++.- +....+++. ..+...++.+++-.+
T Consensus 266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN 343 (463)
T ss_pred cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccc
Confidence 876443332222 122344443322 23333333322 45565432 111111221 233455556655444
Q ss_pred EEEEeeCCC-------eEEE-EeCCCCceee----EcccCCCCc---EEEEEECCCCCEEEE-EecCCeEEEEEcCCCcE
Q 021459 163 LIVSGSHDG-------TCKI-WDAGEGACLK----TLIDDKDPA---VSFAKFSPNGKFILV-GTLDSTLKLWNYSAGKF 226 (312)
Q Consensus 163 ~l~~~~~d~-------~i~i-wd~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~l~~-~~~d~~i~v~d~~~~~~ 226 (312)
.++.....+ .+-. -|.+.|..+- ...+..... -....-.++.++++. +...+++.+||..+.+.
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence 444333221 0000 0111111110 000000000 001112334454444 44557899999999888
Q ss_pred EEEEEccCCceeEEEEEEEc-cCCcEEEEeecCCeEEEEECC
Q 021459 227 LKIYTGHTNKKYCITSTFSV-TNGKYIVSGSEDNCVYVWDLQ 267 (312)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~ 267 (312)
+..+.-. .+.. ...... ..+.+|++- .|..++||..+
T Consensus 424 vQ~l~~~-epv~--Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 424 VQTLALS-EPVL--DICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred eeecccC-ccee--ecceeecCCcchhhhe-ecceEEEEecC
Confidence 7766543 2222 222222 234456554 45568887643
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.90 E-value=2.1e-06 Score=78.85 Aligned_cols=276 Identities=17% Similarity=0.232 Sum_probs=149.2
Q ss_pred ccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceee-
Q 021459 22 SRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCL- 100 (312)
Q Consensus 22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~- 100 (312)
.+.|.++.|.-+.+.++.+..+|.|.+-|.++..... ...-..+|.+++|+||++.++.....+++.+-+-. ..++
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~--f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKD--FEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc--ccchh
Confidence 3689999999999988888899999988877654422 22235789999999999999988888887665321 1111
Q ss_pred -eeeecc---cccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEccCCCEEEEe-----eCC
Q 021459 101 -KTLRGH---SDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNRDGSLIVSG-----SHD 170 (312)
Q Consensus 101 -~~~~~~---~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~d 170 (312)
+.+... .+....+-|....+. +-|+ .|.....+.... +.......+. .=..+.|--||+++++. ...
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTq-frgs-~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQ-FRGS-EGRQAARQKIEKEKALEQIEQDD-HKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred ccccccccccccccceeccccccee-eecc-hhhhcccccccccccccchhhcc-CCceEEEccCCcEEEEEEEeccCCc
Confidence 111000 011111222221111 1111 111111110000 0000011111 22468899999999873 333
Q ss_pred CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE---ecCCeEEEEEcCCCcEEEEEE--ccCCceeEEEEEEE
Q 021459 171 GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG---TLDSTLKLWNYSAGKFLKIYT--GHTNKKYCITSTFS 245 (312)
Q Consensus 171 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~ 245 (312)
..|++||-. +.... ........-..+.|-|.|..+++- +.|+.|.+|.. +|-....+. -..+...+.. ..+
T Consensus 222 RkirV~drE-g~Lns-~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~-L~W 297 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNS-TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEE-LAW 297 (1265)
T ss_pred eeEEEeccc-chhhc-ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchhe-eee
Confidence 789999965 43322 222223345567899999998885 44667888874 332211111 1111111223 334
Q ss_pred ccCCcEEEE---eecCCeEEEEECCchhee--ecccCCccceEEEEEcCCC-ceEEEeeecCCeeEEEEe
Q 021459 246 VTNGKYIVS---GSEDNCVYVWDLQQKTMI--QKLDGHTDSVISVTCHPTE-NKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 246 ~~~~~~l~~---~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~p~~-~~l~~~~~dgd~~v~iw~ 309 (312)
..++..|++ ..+...|++|-+.+..-. +.+.-.+... +.|+|.. ..|..-..+|...++-|-
T Consensus 298 ns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 298 NSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred cCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 467888887 566666999988764322 2222222222 7788853 344444455666666554
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.90 E-value=8.3e-09 Score=56.61 Aligned_cols=39 Identities=44% Similarity=0.864 Sum_probs=36.3
Q ss_pred cceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459 54 LALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92 (312)
Q Consensus 54 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd 92 (312)
++++..+.+|...|++++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356788999999999999999999999999999999997
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=2.4e-09 Score=94.43 Aligned_cols=188 Identities=22% Similarity=0.364 Sum_probs=130.7
Q ss_pred eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCC--eEEEEe
Q 021459 100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG--TCKIWD 177 (312)
Q Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~iwd 177 (312)
.+.+..|.....|++|+.+.++|+.|+..|.|++|++.+|........|+.+++.+.-+.+|..+++.+.-. -..+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 455666778889999999999999999999999999999999889999999999999999999887765443 357899
Q ss_pred CCCC-ceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEE-ccCCceeEEEEEEEccCCcEEEEe
Q 021459 178 AGEG-ACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYT-GHTNKKYCITSTFSVTNGKYIVSG 255 (312)
Q Consensus 178 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 255 (312)
+.+- ...+++. .-.++.|+....+-+.|+.-....+||.+++..+..+- +.....+.-....+.|...+++
T Consensus 1174 ~~s~~~~~Hsf~-----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl-- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFD-----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL-- 1246 (1516)
T ss_pred cccccCcccccc-----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--
Confidence 8652 2222221 12345666655555566666678999999987665532 2111112122223335555554
Q ss_pred ecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEee
Q 021459 256 SEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG 298 (312)
Q Consensus 256 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~ 298 (312)
.|| .+||.+..+.+..+...+..+.. .|||.|..++.-+
T Consensus 1247 -ndG--vLWDvR~~~aIh~FD~ft~~~~G-~FHP~g~eVIINS 1285 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQFTDYGGG-GFHPSGNEVIINS 1285 (1516)
T ss_pred -eCc--eeeeeccHHHHhhhhhheecccc-cccCCCceEEeec
Confidence 466 68999888777776655533222 5999999888755
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.85 E-value=1.5e-08 Score=80.22 Aligned_cols=161 Identities=18% Similarity=0.301 Sum_probs=115.7
Q ss_pred EEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCC-----ceeeEcccCCCCcEEE
Q 021459 123 VSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEG-----ACLKTLIDDKDPAVSF 197 (312)
Q Consensus 123 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~ 197 (312)
++.+.+-.|-+-|+++|-. +.+. .+..|.++.|...++++..|..+|.|..+|++.+ .+...+ .++..++.
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhh
Confidence 4455566677888887643 2233 4567888888888899999999999999999864 222222 23455555
Q ss_pred EEECC-CCCEEEEEecCCeEEEEEcCCCcE---EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheee
Q 021459 198 AKFSP-NGKFILVGTLDSTLKLWNYSAGKF---LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ 273 (312)
Q Consensus 198 ~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (312)
+..-. ++++|.+.+.+|.|++||++.-+. +..+++|.+....+..... +.+..++++++|-..+||.+..+.++.
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~-~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVK-EEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccc-cccceEEEccCeeEEEEEecccCceee
Confidence 55444 678999999999999999987665 8889998776544443333 445678889999999999999988887
Q ss_pred cccC----CccceEEEEEc
Q 021459 274 KLDG----HTDSVISVTCH 288 (312)
Q Consensus 274 ~~~~----h~~~v~~l~~~ 288 (312)
+++- .+..+.++++.
T Consensus 383 tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 383 TIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccCCCCccccccccceehh
Confidence 7653 23356677764
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.85 E-value=1.7e-05 Score=63.49 Aligned_cols=225 Identities=16% Similarity=0.203 Sum_probs=136.5
Q ss_pred EEEEEEcc-CCCeEEEEcCCCe-EEEEeCCCCceeeeeeecccc--cEEEEEEecCCCEEEEeec-----CCcEEEEEcC
Q 021459 67 ISDLAWSS-DSHYICSASDDRT-LRIWDARTPFDCLKTLRGHSD--FVFCVNFNPQSNLIVSGSF-----DESIRIWEVK 137 (312)
Q Consensus 67 v~~~~~~~-~~~~l~~~~~d~~-v~~wd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~-----dg~i~~wd~~ 137 (312)
...++.+| ....++.+-.-|. ..+||..++.. ...+....+ ..-.-.|++||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~-~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQL-LQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCce-eeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 34677888 4566777766664 56788876533 222221111 1113579999999998644 4789999998
Q ss_pred -CCeEEEEeeecCcCeEEEEEccCCCEEEEeeC------------------CCeEEEEeCCCCceeeEcc---cCCCCcE
Q 021459 138 -TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH------------------DGTCKIWDAGEGACLKTLI---DDKDPAV 195 (312)
Q Consensus 138 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------d~~i~iwd~~~~~~~~~~~---~~~~~~~ 195 (312)
.-+.+..+..+...-..+.+.|||+.|+++.. +-.+...|..+++.+.+.. ..+.-.+
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 55666777777766677889999977776531 1234455667777665532 2234467
Q ss_pred EEEEECCCCCEEEEEecCCe-------EEEEEcCCCcEEEEEEccCC-----ceeEEEEEEEccCCc-EEEEeecCCeEE
Q 021459 196 SFAKFSPNGKFILVGTLDST-------LKLWNYSAGKFLKIYTGHTN-----KKYCITSTFSVTNGK-YIVSGSEDNCVY 262 (312)
Q Consensus 196 ~~~~~~~~~~~l~~~~~d~~-------i~v~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~l~~~~~dg~i~ 262 (312)
..++++++|..++..-..|. |-+++ .++.+..+..... ..|.-.+.+. .++. +.+|+-..|.+.
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~-~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAAD-RDGRLIAVTSPRGGRVA 242 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEe-CCCCEEEEECCCCCEEE
Confidence 78888888876655433332 22332 2332332222111 1233333443 4555 457777889999
Q ss_pred EEECCchheeecccCCccceEEEEEcCCCceEEEee
Q 021459 263 VWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG 298 (312)
Q Consensus 263 iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~ 298 (312)
+||..+++.+....- ..+..|+..+++ ++++.|
T Consensus 243 ~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 243 VWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred EEECCCCCEeecccc--CceeeeeecCCc-eEEeCC
Confidence 999999988766542 346777777776 565554
No 314
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.81 E-value=1.8e-05 Score=66.74 Aligned_cols=264 Identities=20% Similarity=0.261 Sum_probs=133.6
Q ss_pred CCCCCEEEEEe---------CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeee
Q 021459 31 SNDGTLLASAS---------LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLK 101 (312)
Q Consensus 31 s~~~~~l~t~~---------~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~ 101 (312)
|||+++++... ..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|.+.+..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 68888776632 235788899998765433222 56788899999999998874 67899998766532222
Q ss_pred eeec-------c---------cccEEEEEEecCCCEEEEeecC-CcEE--------------------------------
Q 021459 102 TLRG-------H---------SDFVFCVNFNPQSNLIVSGSFD-ESIR-------------------------------- 132 (312)
Q Consensus 102 ~~~~-------~---------~~~v~~~~~~~~~~~l~s~~~d-g~i~-------------------------------- 132 (312)
+..| - -+.-..+-|+||++.|+....| ..|+
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2222 0 0112457799999888765433 2222
Q ss_pred ---EEEcCCCeEEEE-ee----ecCcCeEEEEEccCCCEEEEe--eCCC---eEEEEeCCCCceeeEcccCCCC---cEE
Q 021459 133 ---IWEVKTGKCTRV-IR----AHSMPVTSVHFNRDGSLIVSG--SHDG---TCKIWDAGEGACLKTLIDDKDP---AVS 196 (312)
Q Consensus 133 ---~wd~~~~~~~~~-~~----~~~~~v~~~~~~~~~~~l~~~--~~d~---~i~iwd~~~~~~~~~~~~~~~~---~~~ 196 (312)
++|+.+++.... .. ....-+..+.|.++++.|+.. ..+. .+.++|..++............ ...
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 233333332110 00 112236678888888834332 2222 3556777665432222111111 111
Q ss_pred EEEE-CCCCC-EEEEEecCCe--EEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC----eEEEEECCc
Q 021459 197 FAKF-SPNGK-FILVGTLDST--LKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN----CVYVWDLQQ 268 (312)
Q Consensus 197 ~~~~-~~~~~-~l~~~~~d~~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~iwd~~~ 268 (312)
...+ .+++. +|.....+|. |.+++...+... .+....-.... ...+...++.+..++..++ .|..-++..
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~-i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~ 316 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTS-ILGWDEDNNRIYFTANGDNPGERHLYRVSLDS 316 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEE-EEEEECTSSEEEEEESSGGTTSBEEEEEETTE
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecc-cceEcCCCCEEEEEecCCCCCceEEEEEEeCC
Confidence 2223 35554 4444556664 555666555432 22222211111 1223333344555665532 455556662
Q ss_pred hheeecccCCccceEEEEEcCCCceEEEee
Q 021459 269 KTMIQKLDGHTDSVISVTCHPTENKIASAG 298 (312)
Q Consensus 269 ~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~ 298 (312)
+.....+.........+.|+|++++++-..
T Consensus 317 ~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 317 GGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 344455544333336899999999887543
No 315
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=7.4e-07 Score=72.20 Aligned_cols=257 Identities=14% Similarity=0.141 Sum_probs=138.0
Q ss_pred EEEEeCCCcceEEEeeeccCCEEEEEEccCCC-eEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCC-CEEE
Q 021459 46 VIIWSASSLALVHRFVGHSEGISDLAWSSDSH-YICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQS-NLIV 123 (312)
Q Consensus 46 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 123 (312)
+++.+..+.+...-+.+|...|.+++|+|..+ ++..++.+..|++.|+++. ..+.....+ ..+++++|.-|. ++++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~-~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS-CVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccc-eeeeheecc-CCceeeeeccCCcceeE
Confidence 34444444444444566778899999999876 7888899999999999874 445555555 788999998754 6788
Q ss_pred EeecCCcEEEEEcCCCeEEE-Eeee--cCcCeEEEEEc------cCCCEEEEeeCCCeEEEEeCCCC--ceeeEcccCCC
Q 021459 124 SGSFDESIRIWEVKTGKCTR-VIRA--HSMPVTSVHFN------RDGSLIVSGSHDGTCKIWDAGEG--ACLKTLIDDKD 192 (312)
Q Consensus 124 s~~~dg~i~~wd~~~~~~~~-~~~~--~~~~v~~~~~~------~~~~~l~~~~~d~~i~iwd~~~~--~~~~~~~~~~~ 192 (312)
+|...|.|.+||++..+... .+.+ ...+|-.++.- +-+.+++....+ ...|+..-. ........+..
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~p 330 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPP 330 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCC
Confidence 88899999999998654221 1111 12334333322 223333333322 344543211 11111111112
Q ss_pred CcEEEEEECCCCCEEEEEecC-C------eEEE-EEcCCCcEEEEEE-ccCCcee----EEEEEEEccCCcE-EEEeecC
Q 021459 193 PAVSFAKFSPNGKFILVGTLD-S------TLKL-WNYSAGKFLKIYT-GHTNKKY----CITSTFSVTNGKY-IVSGSED 258 (312)
Q Consensus 193 ~~~~~~~~~~~~~~l~~~~~d-~------~i~v-~d~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~-l~~~~~d 258 (312)
+........+..+.++..... . .+-+ -|..+|..+.... .+.+... .-...+.+++..+ +.+|.+.
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 223233344433444333221 0 0111 1222333322111 1101000 0011122233344 4567778
Q ss_pred CeEEEEECCchheeecccCCccceEEEEEcC-C-CceEEEeeecCCeeEEEEee
Q 021459 259 NCVYVWDLQQKTMIQKLDGHTDSVISVTCHP-T-ENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 259 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p-~-~~~l~~~~~dgd~~v~iw~~ 310 (312)
+.+.+||..+.+.++.+.- ..+|..+.... + +.+|++-..| .++|+..
T Consensus 411 n~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LTd~---~v~Iyk~ 460 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLTDD---RVHIYKN 460 (463)
T ss_pred ceeEEeccchhheeeeccc-CcceeecceeecCCcchhhheecc---eEEEEec
Confidence 8999999999999988864 47888887543 2 3466655533 6777654
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=1e-05 Score=71.89 Aligned_cols=195 Identities=14% Similarity=0.238 Sum_probs=126.3
Q ss_pred EECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCC-EEEEEEccCCCeEEEEcCCC-----eEEEEeCCCC-----c
Q 021459 29 KFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG-ISDLAWSSDSHYICSASDDR-----TLRIWDARTP-----F 97 (312)
Q Consensus 29 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~-----~v~~wd~~~~-----~ 97 (312)
.|++.+..++.|+.+|.|.+.+. ..+.+..++.+... |..+....+..+|++.+.|+ .+++|+++.. .
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 46789999999999999888763 34455677777777 44443333446787776665 4899997532 2
Q ss_pred eeee--eeec-----ccccEEEEEEecCCCEEEEeecCCcEEEEE--cCCCeEEEE--eeecCcCeEEEEEccCCCEEEE
Q 021459 98 DCLK--TLRG-----HSDFVFCVNFNPQSNLIVSGSFDESIRIWE--VKTGKCTRV--IRAHSMPVTSVHFNRDGSLIVS 166 (312)
Q Consensus 98 ~~~~--~~~~-----~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd--~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
+++. .+.. ...++.+++.+.+-+.++.|-.+|.|..+. +...+-.+. ......+|+.+++..+++.++-
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 3331 1111 245788899999988999999999999884 322221122 2223568999999988887332
Q ss_pred eeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc
Q 021459 167 GSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK 225 (312)
Q Consensus 167 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 225 (312)
+.....|.+|.+............++....+..+++....+++++ +..+.+||.....
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence 333447888888744433333455566666666777666566655 4478999875433
No 317
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=4.7e-05 Score=65.40 Aligned_cols=229 Identities=10% Similarity=0.022 Sum_probs=131.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccC-CEE------EEEEcc--CCCeEEEEcCCCeEEEEeCCCCceeeeee
Q 021459 33 DGTLLASASLDKTVIIWSASSLALVHRFVGHSE-GIS------DLAWSS--DSHYICSASDDRTLRIWDARTPFDCLKTL 103 (312)
Q Consensus 33 ~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~-~v~------~~~~~~--~~~~l~~~~~d~~v~~wd~~~~~~~~~~~ 103 (312)
.+..++.++.++.+.-+|..+++.+.+...... ... .+.-.| ++..++.++.++.+..+|.+++...-+ .
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~-~ 146 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ-T 146 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc-c
Confidence 466777888889999999999988766532210 000 000111 355677788899999999887644322 1
Q ss_pred ecccccEEE-EEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeE-EEEEcc--CCCEEEEeeCCCeEEEEeCC
Q 021459 104 RGHSDFVFC-VNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVT-SVHFNR--DGSLIVSGSHDGTCKIWDAG 179 (312)
Q Consensus 104 ~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~-~~~~~~--~~~~l~~~~~d~~i~iwd~~ 179 (312)
+.. +.+.+ ... .+..++.+..++.+.-+|.++|+.+-.......... ...-+| .+..++.++.++.+..+|..
T Consensus 147 ~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 147 KVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred cCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEcc
Confidence 111 11111 111 234667777889999999999987755543211000 000011 12356677788999989988
Q ss_pred CCceeeEcccCCC---Cc---EEEEEECC--CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcE
Q 021459 180 EGACLKTLIDDKD---PA---VSFAKFSP--NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKY 251 (312)
Q Consensus 180 ~~~~~~~~~~~~~---~~---~~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (312)
+++..-+...... .. ......+| .+..+.+++.+|.+.-+|..+++.+-....... ... . ..+..
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--~~~----~-~~~~~ 296 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSV--NDF----A-VDGGR 296 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCc--cCc----E-EECCE
Confidence 8765433211000 00 00000111 245677777899999999999886543321110 001 1 12456
Q ss_pred EEEeecCCeEEEEECCchhee
Q 021459 252 IVSGSEDNCVYVWDLQQKTMI 272 (312)
Q Consensus 252 l~~~~~dg~i~iwd~~~~~~~ 272 (312)
+..++.+|.+..+|..+++.+
T Consensus 297 vy~~~~~g~l~ald~~tG~~~ 317 (394)
T PRK11138 297 IYLVDQNDRVYALDTRGGVEL 317 (394)
T ss_pred EEEEcCCCeEEEEECCCCcEE
Confidence 777888999999999887654
No 318
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=7.8e-07 Score=78.70 Aligned_cols=190 Identities=11% Similarity=0.148 Sum_probs=120.3
Q ss_pred EEEECCCCCEEEEEe----CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459 27 CVKFSNDGTLLASAS----LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT 102 (312)
Q Consensus 27 ~~~~s~~~~~l~t~~----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~ 102 (312)
-..|+|...++|.++ ..|++.||- .+|++..... .+-.++++||+|..-.|+.|-.-|.+.+|...+. +.-..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~-e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT-ETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCc-eeeee
Confidence 358999999998876 358899983 5555422111 1223568999999999999988999999987763 33444
Q ss_pred eecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE--EeeecC----cCeEEEEEccCCCE------EEEeeCC
Q 021459 103 LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR--VIRAHS----MPVTSVHFNRDGSL------IVSGSHD 170 (312)
Q Consensus 103 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~----~~v~~~~~~~~~~~------l~~~~~d 170 (312)
...|..+|.-+.|+++|+.++++..-|.|.+|.......++ .+..|. ....|...+++++- .++.+.+
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe 176 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDE 176 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCch
Confidence 45688999999999999999999999999999765221111 111221 22445666666432 2233333
Q ss_pred CeEE-EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE
Q 021459 171 GTCK-IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI 229 (312)
Q Consensus 171 ~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~ 229 (312)
..+- .++.+.....++.. -.-.|+|..+..++.+|+|+-.|- +++...+
T Consensus 177 ~alD~~fnwk~~~a~rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V 226 (1416)
T KOG3617|consen 177 SALDEPFNWKESLAERSDE---------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTV 226 (1416)
T ss_pred hhhcccccCccchhhcccc---------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEE
Confidence 3332 33222111111110 013567888888999999988873 4554443
No 319
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.68 E-value=7.4e-07 Score=69.92 Aligned_cols=201 Identities=17% Similarity=0.269 Sum_probs=122.9
Q ss_pred cccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe-E----EEEeeecC------------cCeEEEEEccCC--CEEEEe
Q 021459 107 SDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK-C----TRVIRAHS------------MPVTSVHFNRDG--SLIVSG 167 (312)
Q Consensus 107 ~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~----~~~~~~~~------------~~v~~~~~~~~~--~~l~~~ 167 (312)
.+.|.++.|...|.++++|...|.|.+|.-+... | ...++.|. ..|..+.|..++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3568899999999999999999999999765432 1 12244443 236677776544 367788
Q ss_pred eCCCeEEEEeCCCCcee----------------------eE--------------------cccCCCCcEEEEEECCCCC
Q 021459 168 SHDGTCKIWDAGEGACL----------------------KT--------------------LIDDKDPAVSFAKFSPNGK 205 (312)
Q Consensus 168 ~~d~~i~iwd~~~~~~~----------------------~~--------------------~~~~~~~~~~~~~~~~~~~ 205 (312)
+.|.+|++|.+.+.... ++ ....+...+..+.+..|..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 89999999987543100 00 0011233445566777777
Q ss_pred EEEEEecCCeEEEEEcCCCcE---EEEEEccCCc--eeEEEE-EEEccCCcEEEEeecCCeEEEEECCchheee------
Q 021459 206 FILVGTLDSTLKLWNYSAGKF---LKIYTGHTNK--KYCITS-TFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ------ 273 (312)
Q Consensus 206 ~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~--~~~~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~------ 273 (312)
.++++ .|=.|.+|++.-... +--+..|.-. ...++. .|.+..-..+.-.+..|.|++-|++...+..
T Consensus 186 t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 186 TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 66654 566888998753321 1112222110 011222 2333334455566788999999997432211
Q ss_pred --c--------ccCCccceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 274 --K--------LDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 274 --~--------~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
. +.+-...|..+.|++.|+++++-.+ .+|+||++.
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy---ltvkiwDvn 309 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY---LTVKIWDVN 309 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc---ceEEEEecc
Confidence 1 1122357888999999999988653 699999974
No 320
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.64 E-value=3e-05 Score=67.60 Aligned_cols=118 Identities=11% Similarity=0.118 Sum_probs=89.4
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE-EeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH-RFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDC 99 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~ 99 (312)
|...|.--+++..+++++.|+.-|.+.+|+-..++... +..+....+..++.+++..++|+|+..|.|.++.++.....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 45555556777889999999999999999987766533 22333455566778888999999999999999977642211
Q ss_pred ----eeee-ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC
Q 021459 100 ----LKTL-RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT 138 (312)
Q Consensus 100 ----~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 138 (312)
.... +.|...|.|++|++++..+++|...|.|..-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1111 23678899999999999999999999998887766
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.5e-05 Score=70.30 Aligned_cols=184 Identities=18% Similarity=0.276 Sum_probs=124.5
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceee
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCL 100 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~ 100 (312)
..+.++|.+++ ++.++-|.-+|.+++++..... .....|... ..+|.++++|+.||.|.+-.+.++.+..
T Consensus 38 ~~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 38 QNDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 35566776664 6789999999999999866432 333345443 5689999999999999998877654432
Q ss_pred eeeecccccEEEEEEecC-----CCEEEEeecCCcEEEEEcCCC--eEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459 101 KTLRGHSDFVFCVNFNPQ-----SNLIVSGSFDESIRIWEVKTG--KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC 173 (312)
Q Consensus 101 ~~~~~~~~~v~~~~~~~~-----~~~l~s~~~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 173 (312)
... -..++.+++++|+ .+.+++|+..| +.++.-+-- +....+..-.++|.++.|. |+++|=++.+| +
T Consensus 108 -~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v 181 (846)
T KOG2066|consen 108 -QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-V 181 (846)
T ss_pred -eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-c
Confidence 222 3357889999997 56899999999 888765421 1112344556799999995 67888887775 7
Q ss_pred EEEeCCCCceeeEcccCCCCc-----EEEEEECCCCCEEEEEecCCeEEEEEcC
Q 021459 174 KIWDAGEGACLKTLIDDKDPA-----VSFAKFSPNGKFILVGTLDSTLKLWNYS 222 (312)
Q Consensus 174 ~iwd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 222 (312)
++||..+++.+..+....... -..+.|.++. .|+.|= ..+|++..++
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGW-GDSVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEec-CCeEEEEEEe
Confidence 999999888776554332111 1234566554 455553 3468887776
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.59 E-value=6.5e-07 Score=77.50 Aligned_cols=118 Identities=11% Similarity=0.218 Sum_probs=90.3
Q ss_pred ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE
Q 021459 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT 142 (312)
Q Consensus 63 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 142 (312)
+...|.--+++..+++++.|+..|.+++|+-..+........+..+.+..+..+++..+++.|+..|.|.++.++.+...
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34456666778889999999999999999976654333333344456667778888888999999999999988764322
Q ss_pred EE------eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459 143 RV------IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE 180 (312)
Q Consensus 143 ~~------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 180 (312)
.. -+.|+..|++++|++++..+.+|...|+|..-.+..
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11 123678899999999999999999999998877765
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1.5e-05 Score=70.92 Aligned_cols=204 Identities=18% Similarity=0.323 Sum_probs=124.5
Q ss_pred EEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeeccccc-EEEEEEecCCCEEEEeecCC-----cEEEEEcCC------
Q 021459 71 AWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDF-VFCVNFNPQSNLIVSGSFDE-----SIRIWEVKT------ 138 (312)
Q Consensus 71 ~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~------ 138 (312)
+|++.+..++.|+.+|.|.+++-. .+.+..++.+... +..+-...+.+.|++.+.|+ .+++||++.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 477888899999999988887643 3444555555554 44343334446788877764 489999853
Q ss_pred CeEE---EEee----ecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCC---CCceeeEcccCCCCcEEEEEECCCCCEEE
Q 021459 139 GKCT---RVIR----AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG---EGACLKTLIDDKDPAVSFAKFSPNGKFIL 208 (312)
Q Consensus 139 ~~~~---~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 208 (312)
.+++ +.+. ....++.+++.+.+-+.+++|-.+|.|..+.-. ..............+++.+.+..+++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 2333 1111 124568899999999999999999999887421 11111122334456788888888887743
Q ss_pred EEecCCeEEEEEcCCCcE-EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc-CCcc
Q 021459 209 VGTLDSTLKLWNYSAGKF-LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD-GHTD 280 (312)
Q Consensus 209 ~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~ 280 (312)
....-..|.+|.+.+..+ ......+.....|.. +....+.+++++ . ..+.+|+.........+. ||..
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss--~~~~t~qfIca~-~-e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSS--FSDGTYQFICAG-S-EFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeee--cCCCCccEEEec-C-ceEEEEcCCCcceeeeecCCCeE
Confidence 344455799998874442 333444433333432 222223344443 3 369999987666655665 5554
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.57 E-value=2.5e-06 Score=76.13 Aligned_cols=182 Identities=13% Similarity=0.215 Sum_probs=127.8
Q ss_pred CCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEE
Q 021459 118 QSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSF 197 (312)
Q Consensus 118 ~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (312)
++..++.|+....+..+|+++.+..+........+.-|. .+++.+.+|...|+|.+-|+++-+.++++..+. ..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs-~si-- 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS-GSI-- 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccc-cce--
Confidence 345677888888888999999887766554443455554 467899999999999999999988888875543 334
Q ss_pred EEECCCCCEEEEEecC---------CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEE---
Q 021459 198 AKFSPNGKFILVGTLD---------STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWD--- 265 (312)
Q Consensus 198 ~~~~~~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd--- 265 (312)
..|+-.|+.|++++.. ..|+|||++.-+.+..+.-+..+. .+ .+.+.=...++..+..|...+-|
T Consensus 221 SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~-fl--rf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 221 SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQ-FL--RFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCch-hh--hhcccccceEEEEecccceeeccccc
Confidence 3577789999998754 458999999877665554443331 11 22222345688889999999999
Q ss_pred CCchhe-eecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 266 LQQKTM-IQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 266 ~~~~~~-~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
+.+... +.-+......+..+.+++.++.++.+-. ++.|.+|-
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~--~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDH--EGHVNLWA 340 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecc--cCcEeeec
Confidence 433211 2222233445899999999999998764 46899985
No 325
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.55 E-value=2e-06 Score=73.40 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=67.5
Q ss_pred ccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceee
Q 021459 106 HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLK 185 (312)
Q Consensus 106 ~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (312)
....+.|++++|+...++.|..||+|.+||...+..... ......+.++|+|+|..+++|+..|.+.+||+.-+....
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~ 335 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKM 335 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccce
Confidence 556789999999999999999999999999987754322 334567899999999999999999999999987665544
Q ss_pred Eccc
Q 021459 186 TLID 189 (312)
Q Consensus 186 ~~~~ 189 (312)
.+..
T Consensus 336 qLls 339 (545)
T PF11768_consen 336 QLLS 339 (545)
T ss_pred eecc
Confidence 4443
No 326
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.51 E-value=0.0006 Score=60.20 Aligned_cols=236 Identities=16% Similarity=0.190 Sum_probs=133.0
Q ss_pred CEEEEEeCCCeEEEEeCCCcceEEEeeeccCC--EEEEEEcc--CCCeEEEEc---------CCCeEEEEeCCCCceeee
Q 021459 35 TLLASASLDKTVIIWSASSLALVHRFVGHSEG--ISDLAWSS--DSHYICSAS---------DDRTLRIWDARTPFDCLK 101 (312)
Q Consensus 35 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~--v~~~~~~~--~~~~l~~~~---------~d~~v~~wd~~~~~~~~~ 101 (312)
..++.++.++.|.-+|..+++.+.+....... -..+.-+| .+..++.++ .++.+..+|..++...-+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 57777788999999999999988776533221 00111111 124455553 357788888887644322
Q ss_pred eeeccc-------------------ccE-EEEEEecCCCEEEEeecCC------------------cEEEEEcCCCeEEE
Q 021459 102 TLRGHS-------------------DFV-FCVNFNPQSNLIVSGSFDE------------------SIRIWEVKTGKCTR 143 (312)
Q Consensus 102 ~~~~~~-------------------~~v-~~~~~~~~~~~l~s~~~dg------------------~i~~wd~~~~~~~~ 143 (312)
...... ..+ ....+.+.+..++.++.++ .|.-.|.++|+..-
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 111110 001 1234455566777776554 68888999998776
Q ss_pred EeeecCcCeE------EEEEc----cCCC---EEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE
Q 021459 144 VIRAHSMPVT------SVHFN----RDGS---LIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG 210 (312)
Q Consensus 144 ~~~~~~~~v~------~~~~~----~~~~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 210 (312)
.++....... ...+. -++. .++.++.+|.+...|..+++.+-+..... .....+| ..+..+
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~----~~~~~~~--~~vyv~ 344 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE----QPMAYDP--GLVYLG 344 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec----cccccCC--ceEEEc
Confidence 5542111110 00111 1333 57788899999999999998765432110 0112233 223222
Q ss_pred ------------------ecCCeEEEEEcCCCcEEEEEEccCCce-----eEEEEEEEccCCcEEEEeecCCeEEEEECC
Q 021459 211 ------------------TLDSTLKLWNYSAGKFLKIYTGHTNKK-----YCITSTFSVTNGKYIVSGSEDNCVYVWDLQ 267 (312)
Q Consensus 211 ------------------~~d~~i~v~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 267 (312)
..+|.+.-+|..+++.+-......... ...........+..++.++.||.|+.+|..
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 345 AFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred cccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECC
Confidence 235778888888888765443221000 000000001235688888999999999999
Q ss_pred chheeeccc
Q 021459 268 QKTMIQKLD 276 (312)
Q Consensus 268 ~~~~~~~~~ 276 (312)
+++.+-+.+
T Consensus 425 tG~~lW~~~ 433 (488)
T cd00216 425 TGKELWKFR 433 (488)
T ss_pred CCceeeEEE
Confidence 998876554
No 327
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=1e-05 Score=71.41 Aligned_cols=180 Identities=16% Similarity=0.198 Sum_probs=116.5
Q ss_pred ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEc
Q 021459 108 DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL 187 (312)
Q Consensus 108 ~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (312)
+.+.|++++ .+.++-|...|.|++++..-.. .....|... .-+|+++++|+.||++.+..+.+.+...++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 455666665 4789999999999999865332 222233322 458999999999999999887776554433
Q ss_pred ccCCCCcEEEEEECCC-----CCEEEEEecCCeEEEEEcCC-CcEEE-EEEccCCceeEEEEEEEccCCcEEEEeecCCe
Q 021459 188 IDDKDPAVSFAKFSPN-----GKFILVGTLDSTLKLWNYSA-GKFLK-IYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC 260 (312)
Q Consensus 188 ~~~~~~~~~~~~~~~~-----~~~l~~~~~d~~i~v~d~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 260 (312)
.....+..++++|+ .+.+++|+.-| +.++...- +.... ......+...++ . ..|.++|-++.+|
T Consensus 110 --df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i---~--W~g~lIAWand~G- 180 (846)
T KOG2066|consen 110 --DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSI---K--WRGNLIAWANDDG- 180 (846)
T ss_pred --ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEE---E--ecCcEEEEecCCC-
Confidence 23455777888887 56788898888 77765321 11111 122222333332 2 2478999999888
Q ss_pred EEEEECCchheeecccCCccc------eEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 261 VYVWDLQQKTMIQKLDGHTDS------VISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 261 i~iwd~~~~~~~~~~~~h~~~------v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
|++||+..++.+..++..... -..+.|.+. ..|+.|..| +|+|..+
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d---~v~i~~I 232 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD---SVKICSI 232 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC---eEEEEEE
Confidence 999999988777666543222 345566654 577777744 6777654
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.48 E-value=0.00015 Score=67.20 Aligned_cols=236 Identities=13% Similarity=0.172 Sum_probs=131.8
Q ss_pred CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE
Q 021459 65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV 144 (312)
Q Consensus 65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~ 144 (312)
..|.++.|..+..-++.+...|.|.+-|..+.. +.....-...|.+++|+||...++-.+..+++.+-+ .+-..+..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhc
Confidence 579999999999888888899999998876642 222333456799999999999998888877776543 21111111
Q ss_pred eeec-----CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE-----ecCC
Q 021459 145 IRAH-----SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG-----TLDS 214 (312)
Q Consensus 145 ~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~d~ 214 (312)
..-+ ....-.+.|-...+.| -|+ .|.-...+........... .....-..+.|--||+++++. ....
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQI-EQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred cccccccccccccceecccccceee-ecc-hhhhcccccccccccccch-hhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 0000 1111222332211111 111 1111111110000000000 011122346799999999984 2237
Q ss_pred eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEe---ecCCeEEEEECCc---hheeecccCCccceEEEEEc
Q 021459 215 TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSG---SEDNCVYVWDLQQ---KTMIQKLDGHTDSVISVTCH 288 (312)
Q Consensus 215 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~ 288 (312)
.|++||.. +..-..-...... -....+.|.|..+++- +.|+.|.+|.-+. ++..-.++.....|..|+|+
T Consensus 223 kirV~drE-g~Lns~se~~~~l---~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGL---QHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred eEEEeccc-chhhcccCccccc---ccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeec
Confidence 89999975 3221110001111 1122344677787764 3556799997643 23333444455569999999
Q ss_pred CCCceEEEeeecCCee-EEEEee
Q 021459 289 PTENKIASAGLDGDRT-VRVWVQ 310 (312)
Q Consensus 289 p~~~~l~~~~~dgd~~-v~iw~~ 310 (312)
.++..|+.....+... |++|-.
T Consensus 299 s~sdiLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 299 SNSDILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred CCCCceeeeecccccceEEEEEe
Confidence 9999999866556655 999964
No 329
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.47 E-value=0.00029 Score=59.83 Aligned_cols=265 Identities=14% Similarity=0.135 Sum_probs=130.8
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC--------C
Q 021459 24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR--------T 95 (312)
Q Consensus 24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~--------~ 95 (312)
.|+.+.|+++...|+.|-..|.|.||.....+.-. ......-....+.+- ...++.-.+-|+. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58899999999999999999999998765432211 000001111111110 0011111122221 1
Q ss_pred CceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee--e------cCcCeEEEEEcc-----CC-
Q 021459 96 PFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--A------HSMPVTSVHFNR-----DG- 161 (312)
Q Consensus 96 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~- 161 (312)
+......+....+.|.+++.+. =-+++.|..+|.+.+.|++....+..-. . ....++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 1223333444578899999864 4588999999999999998776654421 1 223577777763 33
Q ss_pred --CEEEEeeCCCeEEEEeCC--C-CceeeEc----ccCCCCcEEEEEECCC--------------------CCEEEEEec
Q 021459 162 --SLIVSGSHDGTCKIWDAG--E-GACLKTL----IDDKDPAVSFAKFSPN--------------------GKFILVGTL 212 (312)
Q Consensus 162 --~~l~~~~~d~~i~iwd~~--~-~~~~~~~----~~~~~~~~~~~~~~~~--------------------~~~l~~~~~ 212 (312)
-.+++|+..|.+.+|.+. . +.....+ .......+....++.+ -+.+++...
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 368899999999998653 1 1111111 1222333333333211 122444455
Q ss_pred CCeEEEEEcCCCcEEEEEEccCCceeEEEEEEE----ccCCcEEEEeecCCeEEEEECCchheeecccCC----ccceEE
Q 021459 213 DSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFS----VTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGH----TDSVIS 284 (312)
Q Consensus 213 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h----~~~v~~ 284 (312)
+..+|++...+.+...... .....+....+. ...+..|++-..+|.|+++.+..-+.+...+-. ...+..
T Consensus 234 e~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred ccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 7789999887766544332 222222222222 234667888899999999999877666554331 223445
Q ss_pred EEEcCCCceEEEeee
Q 021459 285 VTCHPTENKIASAGL 299 (312)
Q Consensus 285 l~~~p~~~~l~~~~~ 299 (312)
..+.++|..+.-.|.
T Consensus 312 ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 312 SSISRNGDIFYWTGP 326 (395)
T ss_dssp -EE-TTS-EEEE-SS
T ss_pred cEECCCCCEEEEeCc
Confidence 556777776665543
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.44 E-value=0.00015 Score=63.76 Aligned_cols=175 Identities=17% Similarity=0.181 Sum_probs=106.7
Q ss_pred ECCCCCEEEE-EeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---C-eEEEEeCCCCceeeeeee
Q 021459 30 FSNDGTLLAS-ASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---R-TLRIWDARTPFDCLKTLR 104 (312)
Q Consensus 30 ~s~~~~~l~t-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~-~v~~wd~~~~~~~~~~~~ 104 (312)
++|||+.+.. .-..+.+.+.|.++.+....+.-- .....+.++++|+++++.+.+ + ++..-+...
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--------- 269 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--------- 269 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeecccc---------
Confidence 4456654432 223456667777776665554432 234567899999999887632 1 222222111
Q ss_pred cccccEEEEE--------EecCCCEEEEeecCCcEEEEEcCC----C-eEEEEeeecCcCeEEEEEccCCCEEEEee-CC
Q 021459 105 GHSDFVFCVN--------FNPQSNLIVSGSFDESIRIWEVKT----G-KCTRVIRAHSMPVTSVHFNRDGSLIVSGS-HD 170 (312)
Q Consensus 105 ~~~~~v~~~~--------~~~~~~~l~s~~~dg~i~~wd~~~----~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 170 (312)
.+ ..+. +.++|++... .++.|.+.|.++ + +.+..+. -......+.++|||+++++++ .+
T Consensus 270 --~d--~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 270 --RD--WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred --Cc--eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCC
Confidence 11 1222 2346766554 256799999987 3 3333333 344567899999999887655 58
Q ss_pred CeEEEEeCCCCce------------eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459 171 GTCKIWDAGEGAC------------LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223 (312)
Q Consensus 171 ~~i~iwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 223 (312)
.++.+.|+.+.+. ..+......+ ....|+++|....+--.|..|..|++..
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP--LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP--LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeeccCCCc--ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 8999999977442 2222211111 2346899998878888899999999865
No 331
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.43 E-value=5e-06 Score=71.02 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=63.1
Q ss_pred cccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459 19 TAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART 95 (312)
Q Consensus 19 ~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~ 95 (312)
......|.+.+++|+.+.++.|..||+|.+||...+... .....-..+.++|+|+|..+++|+..|.+.+||+.-
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 457788999999999999999999999999998765332 223345567899999999999999999999999854
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.40 E-value=0.00059 Score=58.83 Aligned_cols=229 Identities=17% Similarity=0.170 Sum_probs=111.5
Q ss_pred eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR 94 (312)
Q Consensus 15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~ 94 (312)
.+.+....-....+.++|.|+.++.+ .||...++......... . +.-..++|.+.++ +|+-...+.|.++.--
T Consensus 25 ~k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~--~---G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA--F---GSGLSFVWSSRNR-YAVLESSSTIKIYKNF 97 (443)
T ss_dssp -EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE--E---EE-SEEEE-TSSE-EEEE-TTS-EEEEETT
T ss_pred eccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc--c---CceeEEEEecCcc-EEEEECCCeEEEEEcC
Confidence 44455566667889999999999885 55788888754433322 2 2334688999555 5555568889996322
Q ss_pred CCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459 95 TPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK 174 (312)
Q Consensus 95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
.. ...+.++.. ..+..+- + |..|+..+.+ .|.+||..+++.++.+... +|..+.|++++++++..+.+ .+.
T Consensus 98 ~~-~~~k~i~~~-~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~ 168 (443)
T PF04053_consen 98 KN-EVVKSIKLP-FSVEKIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIY 168 (443)
T ss_dssp EE--TT-----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEE
T ss_pred cc-ccceEEcCC-cccceEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEE
Confidence 11 111122111 1222222 2 7777766544 7999999999988877543 48999999999999988876 566
Q ss_pred EEeCCCC---------ce-eeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEE
Q 021459 175 IWDAGEG---------AC-LKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTF 244 (312)
Q Consensus 175 iwd~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
+++.... .. ......+....+....|..+ .++-.+.. .++. +.+|+... +..-..+.+.+..
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~-i~~ld~~~yllgy-- 240 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGI-IAHLDKPLYLLGY-- 240 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEE-EEE-SS--EEEEE--
T ss_pred EEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcce-EEEcCCceEEEEE--
Confidence 6654322 00 01111111233445556555 44444444 6666 44554322 2211222232221
Q ss_pred EccCCcEEEEeecCCeEEEEECCc
Q 021459 245 SVTNGKYIVSGSEDNCVYVWDLQQ 268 (312)
Q Consensus 245 ~~~~~~~l~~~~~dg~i~iwd~~~ 268 (312)
.++...+.....|+.|..+.+..
T Consensus 241 -~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 241 -LPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp -ETTTTEEEEE-TT--EEEEE--H
T ss_pred -EccCCEEEEEECCCCEEEEEECH
Confidence 23445677777888888877653
No 333
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.40 E-value=0.00048 Score=53.36 Aligned_cols=261 Identities=15% Similarity=0.178 Sum_probs=129.0
Q ss_pred CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEE-EEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEE
Q 021459 34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS-DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFC 112 (312)
Q Consensus 34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~ 112 (312)
|++++.|..+|.+.+.+.+++.+..++..- +.|. .....+++..+..++.|++.+..|..+. .++-..+-..+.-.+
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~-~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFVS 140 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEeccccc-ceEEecccCCceecc
Confidence 567888999999999999999777666543 2332 3446678999999999999999998774 444333322233334
Q ss_pred EEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec--CcCeEE--EEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc
Q 021459 113 VNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH--SMPVTS--VHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI 188 (312)
Q Consensus 113 ~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~~v~~--~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 188 (312)
.+.+|-...|+.+...|.|---..+..... .+-.+ ..|+.. +. -+..+..+.-||.+.-+| ..++.+.++.
T Consensus 141 P~i~~g~~sly~a~t~G~vlavt~~~~~~~-~~w~~~~~~PiF~splc---v~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLYAAITAGAVLAVTKNPYSST-EFWAATRFGPIFASPLC---VGSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEEEEeccceEEEEccCCCCcc-eehhhhcCCccccCcee---ccceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 445563334444455555443333333111 11111 122211 11 122344444555555555 3333333221
Q ss_pred cCCCCcEEEEEEC-CCCCEEEEEecC--------CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEc---cCCcEEEEee
Q 021459 189 DDKDPAVSFAKFS-PNGKFILVGTLD--------STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSV---TNGKYIVSGS 256 (312)
Q Consensus 189 ~~~~~~~~~~~~~-~~~~~l~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~ 256 (312)
. .++....-+-+ |..+.+..+..+ ..-.+|..+.|...+.+.... +...+.. ...++|..++
T Consensus 216 t-~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~-----l~F~~h~~~~S~~~ll~~~s 289 (354)
T KOG4649|consen 216 T-KGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLHVYLSPK-----LRFDLHSPGISYPKLLRRSS 289 (354)
T ss_pred C-CCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEEEEeCcc-----cceeccCCCCcchhhhhhhc
Confidence 1 11111100111 222333332222 122356666665444433211 0111111 1256788889
Q ss_pred cCCeEEEEECCchheeecccCCccce---EEEEE------cCC--CceEEEeeecCCeeEEEEeec
Q 021459 257 EDNCVYVWDLQQKTMIQKLDGHTDSV---ISVTC------HPT--ENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 257 ~dg~i~iwd~~~~~~~~~~~~h~~~v---~~l~~------~p~--~~~l~~~~~dgd~~v~iw~~~ 311 (312)
.||++.+--.+ ..+..+..|.+.+ .++.. +|- +.+|+.++- |..|+-|+++
T Consensus 290 ~dgkv~il~~~--~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcR--DdYv~cldl~ 351 (354)
T KOG4649|consen 290 GDGKVMILMTS--KSLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCR--DDYVRCLDLD 351 (354)
T ss_pred CCCcEEEEEec--ccccccccCCCccceEEEeecCcccccCCeEEccEEEEEEc--cCeEEEEecc
Confidence 99988886432 2233333343332 22222 231 346777774 4589989875
No 334
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.34 E-value=0.00077 Score=53.30 Aligned_cols=210 Identities=16% Similarity=0.228 Sum_probs=114.7
Q ss_pred CCCCceeceeeecccccceEEEEECCCCC-EEEEEeCCCeEEEEeCCCcceEEEeeec-cCCEEEEEEccCCCeEEEEcC
Q 021459 7 PPYKPYRHFKTLTAHSRAVSCVKFSNDGT-LLASASLDKTVIIWSASSLALVHRFVGH-SEGISDLAWSSDSHYICSASD 84 (312)
Q Consensus 7 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~t~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 84 (312)
|.|...-.-+.+.+-.+.++.++|.|+.+ +++.....+.|...+. .++.+.++.-. .+....|++..++.++++--.
T Consensus 6 ~~y~~~i~~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er 84 (248)
T PF06977_consen 6 PDYRVVIEAKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEER 84 (248)
T ss_dssp TT-EEEEEEEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETT
T ss_pred CCcEEEEeeeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcC
Confidence 34433333456777777899999999866 5556677788877786 46777666533 245778999888888877666
Q ss_pred CCeEEEEeCCCCce-----eeeee-----ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC---CeEEEEe------
Q 021459 85 DRTLRIWDARTPFD-----CLKTL-----RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT---GKCTRVI------ 145 (312)
Q Consensus 85 d~~v~~wd~~~~~~-----~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~---~~~~~~~------ 145 (312)
++.+.++++..... ....+ ..+...+-.++|+|.++.|+.+-...-..+|.++. .......
T Consensus 85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 85 DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccc
Confidence 88898888732111 11111 12344578899999988888877766667776653 2111111
Q ss_pred --eecCcCeEEEEEccC-CCEEEEeeCCCeEEEEeCCCCceeeEcccC--------CCCcEEEEEECCCCCEEEEEecCC
Q 021459 146 --RAHSMPVTSVHFNRD-GSLIVSGSHDGTCKIWDAGEGACLKTLIDD--------KDPAVSFAKFSPNGKFILVGTLDS 214 (312)
Q Consensus 146 --~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
...-..+.+++++|. +.+++....+..+..+| .+|+.+..+.-. .-+....++++++|++.++ +.-+
T Consensus 165 ~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpN 242 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPN 242 (248)
T ss_dssp -HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTT
T ss_pred cccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCc
Confidence 112234678899985 45666677777888888 556654433221 1245667889999865554 4455
Q ss_pred eEEEE
Q 021459 215 TLKLW 219 (312)
Q Consensus 215 ~i~v~ 219 (312)
..++|
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 55544
No 335
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.30 E-value=3.1e-07 Score=78.66 Aligned_cols=199 Identities=20% Similarity=0.308 Sum_probs=123.4
Q ss_pred ccceEEEEECC--CCCEEEEEeCCCeEEEEeCCCcce--EEEeeeccCCEEEEEEcc-CCCeEEEEcC----CCeEEEEe
Q 021459 22 SRAVSCVKFSN--DGTLLASASLDKTVIIWSASSLAL--VHRFVGHSEGISDLAWSS-DSHYICSASD----DRTLRIWD 92 (312)
Q Consensus 22 ~~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----d~~v~~wd 92 (312)
...+.|+++.. +..+++.|..+|.|-+-......- .....+|....++++|++ |.+.||+|-. |-.+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34566777654 345788899999998876553221 223455777889999998 5677877732 45789999
Q ss_pred CCCCce----eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEcc-CCCEEEEe
Q 021459 93 ARTPFD----CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNR-DGSLIVSG 167 (312)
Q Consensus 93 ~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 167 (312)
+.+... ......+......+++|..+.+++++|.....+.++|++.... .........+..+...| .+.++++-
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCCCCCceecc
Confidence 876421 1111111223345788888888999999999999999984321 11111233456677777 66676655
Q ss_pred eCCCeEEEEe-CCCCce-eeEcccCC---CCcEEEEEECCCCC-EEEEE-ecCCeEEEEEcC
Q 021459 168 SHDGTCKIWD-AGEGAC-LKTLIDDK---DPAVSFAKFSPNGK-FILVG-TLDSTLKLWNYS 222 (312)
Q Consensus 168 ~~d~~i~iwd-~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~-~l~~~-~~d~~i~v~d~~ 222 (312)
. ||.|.+|| .++-+. +..+.... ......++|.|... ++++. -..++|+++|.+
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 4 99999999 333221 11121111 12355667887543 34444 455789999875
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.26 E-value=0.0016 Score=53.26 Aligned_cols=260 Identities=16% Similarity=0.189 Sum_probs=148.1
Q ss_pred CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEc----------CCCeEEEEeCCCCceeeee--ee-cccc--
Q 021459 44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSAS----------DDRTLRIWDARTPFDCLKT--LR-GHSD-- 108 (312)
Q Consensus 44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~v~~wd~~~~~~~~~~--~~-~~~~-- 108 (312)
+.+.|+|..+++.+..+..- -.-.+..+|+++.++++. ..-.|.+||..+. ..... +. ++..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL-~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTL-SPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTT-EEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcC-cccceEecCCcchhee
Confidence 47889999998888776542 223467899999888653 2336889998874 22211 11 1110
Q ss_pred --cEEEEEEecCCCEEEEeec--CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCC-CCce
Q 021459 109 --FVFCVNFNPQSNLIVSGSF--DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG-EGAC 183 (312)
Q Consensus 109 --~v~~~~~~~~~~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~ 183 (312)
......++.|+++++.... ..+|.|-|+..++....+....+ ..+--+++ +-|.+-+.||.+....+. .|+.
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC--~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC--WLIYPSGN-RGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE--EEEEEEET-TEEEEEETTSCEEEEEETSTSSE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE--EEEEecCC-CceEEEecCCceEEEEECCCCCE
Confidence 1123467788888776543 45788999999888777654332 22222222 457788889988887776 3332
Q ss_pred ee----EcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE--EEEEEccCC----ceeE----EEEEEEccCC
Q 021459 184 LK----TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF--LKIYTGHTN----KKYC----ITSTFSVTNG 249 (312)
Q Consensus 184 ~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~----~~~~----~~~~~~~~~~ 249 (312)
.. .+....++.+..-.+...+..++..+.+|.|+-.|+..... ...+..... ..+. -...+....+
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 21 12223333443344555666666688999999999876653 222221110 0000 0112333344
Q ss_pred cEEEEee-------cCC--eEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 250 KYIVSGS-------EDN--CVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 250 ~~l~~~~-------~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
++.+.-. +|+ .|-++|+.+++.+.++.. ..++.+|+.+.+.+-++.+-..+++.+.+||.
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 4433321 122 377779999999888863 34577999998876444433335678999875
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=6.4e-05 Score=67.11 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=61.9
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459 25 VSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDAR 94 (312)
Q Consensus 25 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~ 94 (312)
+++++|+|..-.|+.|-.-|.+.+|...+.+.-.....|+.+|..+.|+++|..|.++..-|.|.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 4468999999899999999999999988777666667899999999999999999999999999999653
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.20 E-value=5e-07 Score=77.45 Aligned_cols=201 Identities=16% Similarity=0.280 Sum_probs=122.3
Q ss_pred cCCEEEEEEccC--CCeEEEEcCCCeEEEEeCCCCcee-eeeeecccccEEEEEEec-CCCEEEEee----cCCcEEEEE
Q 021459 64 SEGISDLAWSSD--SHYICSASDDRTLRIWDARTPFDC-LKTLRGHSDFVFCVNFNP-QSNLIVSGS----FDESIRIWE 135 (312)
Q Consensus 64 ~~~v~~~~~~~~--~~~l~~~~~d~~v~~wd~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~s~~----~dg~i~~wd 135 (312)
...+.++++.-+ ..+++.|..+|.|-+-..+.+... -....++.....+++|++ |.+.|++|- .|..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 455677777654 357889999999999887665433 233456778889999988 556676663 246799999
Q ss_pred cCCCe--E--EEEeee-cCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECC-CCCEEEE
Q 021459 136 VKTGK--C--TRVIRA-HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSP-NGKFILV 209 (312)
Q Consensus 136 ~~~~~--~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 209 (312)
+.++- + ...+.. ......+++|..+.+++++|.....+.++|++.......... ...+..+..+| .+++++.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn--Tk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN--TKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh--hhhcccceecCCCCCceec
Confidence 98761 1 112222 223455788888999999999999999999985332222111 11233445667 5667665
Q ss_pred EecCCeEEEEE-cCCCcE-EEEEEccCCc--eeEEEEEEEccCCcEEEE-eecCCeEEEEECC
Q 021459 210 GTLDSTLKLWN-YSAGKF-LKIYTGHTNK--KYCITSTFSVTNGKYIVS-GSEDNCVYVWDLQ 267 (312)
Q Consensus 210 ~~~d~~i~v~d-~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~ 267 (312)
-. ||.|.+|| .++-+. +..+.....+ .......+.+.....+++ --..++|+++|+.
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 54 99999999 443322 1111111111 112223333333334444 4456889999874
No 339
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.18 E-value=0.0027 Score=52.91 Aligned_cols=265 Identities=17% Similarity=0.222 Sum_probs=119.2
Q ss_pred EECCCCCEEEE-EeCCC--eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeec
Q 021459 29 KFSNDGTLLAS-ASLDK--TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRG 105 (312)
Q Consensus 29 ~~s~~~~~l~t-~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~ 105 (312)
+|.+||+.|+. +..|| .+.+.|+.+++...-..+.........++|+.+.++-......|+-.|+++..+ ......
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEEC
Confidence 57788875544 44455 455558888776554333222223456778877776555567888889887543 222233
Q ss_pred ccccEEEEEE--ecCCCEEEEeec----------------------CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCC
Q 021459 106 HSDFVFCVNF--NPQSNLIVSGSF----------------------DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDG 161 (312)
Q Consensus 106 ~~~~v~~~~~--~~~~~~l~s~~~----------------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (312)
..+.+-...| +.|+..++-.-. ...|..-|+.+|+....+. ....+.-+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCC
Confidence 3444433444 334554432211 1235555777777654444 34456778888855
Q ss_pred CEE-EEeeC---CC-eEEEEeCCC-CceeeEcc-cCCCCcEEEEEECCCCCEEEEEe-----cCCeEEEEEcCCCcEEEE
Q 021459 162 SLI-VSGSH---DG-TCKIWDAGE-GACLKTLI-DDKDPAVSFAKFSPNGKFILVGT-----LDSTLKLWNYSAGKFLKI 229 (312)
Q Consensus 162 ~~l-~~~~~---d~-~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~-----~d~~i~v~d~~~~~~~~~ 229 (312)
..+ +-|.+ +. .-+||-+++ +...+.+. ......+..-.|.|||..+.--+ .+..|.-+|..+++....
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 444 43332 22 135664433 22222221 12234556667999998766522 244577778877765433
Q ss_pred EEccCCceeEEEEEEEccCCcEEEEeecC----------------CeEEEEECCchheee---------cccCCcc-ceE
Q 021459 230 YTGHTNKKYCITSTFSVTNGKYIVSGSED----------------NCVYVWDLQQKTMIQ---------KLDGHTD-SVI 283 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~---------~~~~h~~-~v~ 283 (312)
.... .+... ...+++++++.=+.| -.|++++++.+.... .+.++.. .-.
T Consensus 280 ~~~p----~~~H~-~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP 354 (386)
T PF14583_consen 280 MEMP----WCSHF-MSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP 354 (386)
T ss_dssp EEE-----SEEEE-EE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred EeCC----ceeee-EEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence 2221 23332 233667776653333 256677776544321 1122211 124
Q ss_pred EEEEcCCCceEEEeeec
Q 021459 284 SVTCHPTENKIASAGLD 300 (312)
Q Consensus 284 ~l~~~p~~~~l~~~~~d 300 (312)
...|+||+++++-.|.-
T Consensus 355 hp~FSPDgk~VlF~Sd~ 371 (386)
T PF14583_consen 355 HPSFSPDGKWVLFRSDM 371 (386)
T ss_dssp --EE-TTSSEEEEEE-T
T ss_pred CCccCCCCCEEEEECCC
Confidence 66899999988876643
No 340
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.17 E-value=0.0014 Score=55.47 Aligned_cols=233 Identities=17% Similarity=0.186 Sum_probs=118.7
Q ss_pred ccCCCeEEEEc---------CCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE
Q 021459 73 SSDSHYICSAS---------DDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR 143 (312)
Q Consensus 73 ~~~~~~l~~~~---------~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 143 (312)
|||+++++... ..+.+.+||+.+.. ...+......+....|+|+++.++... ++.|.++++.+++..+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~--~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE--ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE--EEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc--eEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence 46676666532 23578899998742 223322245677899999999988875 5789999987775443
Q ss_pred Eeeec-----------------CcCeEEEEEccCCCEEEEeeCC-Ce---------------------------------
Q 021459 144 VIRAH-----------------SMPVTSVHFNRDGSLIVSGSHD-GT--------------------------------- 172 (312)
Q Consensus 144 ~~~~~-----------------~~~v~~~~~~~~~~~l~~~~~d-~~--------------------------------- 172 (312)
..... -..-..+.|+||+++|+....| ..
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 22111 0123568899999988765432 11
Q ss_pred --EEEEeCCCCceee-Ecc---cCCCCcEEEEEECCCCCEEEEEe--cC---CeEEEEEcCCCcEEEEEEccCCcee--E
Q 021459 173 --CKIWDAGEGACLK-TLI---DDKDPAVSFAKFSPNGKFILVGT--LD---STLKLWNYSAGKFLKIYTGHTNKKY--C 239 (312)
Q Consensus 173 --i~iwd~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~l~~~~--~d---~~i~v~d~~~~~~~~~~~~~~~~~~--~ 239 (312)
+.++|+.+++... ... ...+..+..+.|.++++.|++.- .+ ..+.++|..++.............. .
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 2234444433211 111 12234456677888887444432 22 2456677766654333322111100 0
Q ss_pred EEEEEE-ccCCcEEEEeecCCeEEEE--ECCchheeecccCCccceEE-EEEcCCCceEE-EeeecCCeeEEEEe
Q 021459 240 ITSTFS-VTNGKYIVSGSEDNCVYVW--DLQQKTMIQKLDGHTDSVIS-VTCHPTENKIA-SAGLDGDRTVRVWV 309 (312)
Q Consensus 240 ~~~~~~-~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~h~~~v~~-l~~~p~~~~l~-~~~~dgd~~v~iw~ 309 (312)
-...+. ..+..++.....+|.-+|| +...+. ...+....-.|.. +.+.++++.+. ++..++-..-.||.
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~ 311 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYR 311 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEE
Confidence 011222 3445566555677766665 444433 3344444445645 57788776554 44432223334443
No 341
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.16 E-value=0.0036 Score=55.43 Aligned_cols=146 Identities=12% Similarity=0.112 Sum_probs=84.9
Q ss_pred EEEEEecCCCEEEEeecCC----cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC-----C
Q 021459 111 FCVNFNPQSNLIVSGSFDE----SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE-----G 181 (312)
Q Consensus 111 ~~~~~~~~~~~l~s~~~dg----~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~-----~ 181 (312)
.-+.++|+++++++.+.+. ++..-+.........+.... + -++.++|++... .++.|.+.|.++ .
T Consensus 238 d~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~ 311 (635)
T PRK02888 238 DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS 311 (635)
T ss_pred ccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCc
Confidence 4467788888887776432 23333322222111111100 0 133457776665 357899999987 3
Q ss_pred ceeeEcccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcE------------EEEEEccCCceeEEEEEEEccC
Q 021459 182 ACLKTLIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKF------------LKIYTGHTNKKYCITSTFSVTN 248 (312)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 248 (312)
.....+.... ....+.++|||+++++++ .+.+|.|+|+.+.+. +........ .+...| ..+
T Consensus 312 ~v~~yIPVGK--sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG---PLHTaF-Dg~ 385 (635)
T PRK02888 312 ALTRYVPVPK--NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG---PLHTAF-DGR 385 (635)
T ss_pred ceEEEEECCC--CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC---cceEEE-CCC
Confidence 3444333222 234567999999887764 588999999976442 111111111 123333 356
Q ss_pred CcEEEEeecCCeEEEEECCc
Q 021459 249 GKYIVSGSEDNCVYVWDLQQ 268 (312)
Q Consensus 249 ~~~l~~~~~dg~i~iwd~~~ 268 (312)
|....|---|..|..||+..
T Consensus 386 G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 386 GNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCEEEeEeecceeEEEehHH
Confidence 77888888899999999865
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.16 E-value=0.00016 Score=62.06 Aligned_cols=185 Identities=18% Similarity=0.201 Sum_probs=104.6
Q ss_pred cccceEEEEECCCCCEEEEEe---CC-CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEE-cCCCe--EEEEeC
Q 021459 21 HSRAVSCVKFSNDGTLLASAS---LD-KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSA-SDDRT--LRIWDA 93 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~---~d-~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~--v~~wd~ 93 (312)
-...+..-+|+|++..++... .. ..+.++++.+++...... ....-...+|+|||+.|+.+ ..|+. |.+.|+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 344566678999998766542 22 358888888765432222 12223357899999877654 45665 555566
Q ss_pred CCCceeeeeeecccccEEEEEEecCCCEEEEee-cCCc--EEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC
Q 021459 94 RTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGS-FDES--IRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD 170 (312)
Q Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
.... ...+..-.+.-..-.|+|||+.++..+ ..|. |.+++.+.++..+ +......-..-.|+|||++++..+..
T Consensus 270 ~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~SpdG~~i~~~~~~ 346 (425)
T COG0823 270 DGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSPDGDKIVFESSS 346 (425)
T ss_pred CCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccCCCCCCEEEEEecc
Confidence 5532 222332233333677999999876554 4454 6666776665433 22222222366799999998876643
Q ss_pred -Ce--EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe
Q 021459 171 -GT--CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT 211 (312)
Q Consensus 171 -~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
|. |.+.|+.++...+.+. .........+.+++..+...+
T Consensus 347 ~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 347 GGQWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceEEEec
Confidence 43 5566665544322221 112222334677777665543
No 343
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.6e-05 Score=68.42 Aligned_cols=95 Identities=13% Similarity=0.168 Sum_probs=74.1
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEE-EEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS-DLAWSSDSHYICSASDDRTLRIWDARTPFDC 99 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~ 99 (312)
-...|.-+.|+|.-.+||++..+|.+.+...+ .+.+..+.-|...++ +++|.|||+.|+.|-.||+|++-|++.+...
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34567789999999999999999999888777 666677776777777 9999999999999999999999999886543
Q ss_pred eeeeecccccEEEEEEe
Q 021459 100 LKTLRGHSDFVFCVNFN 116 (312)
Q Consensus 100 ~~~~~~~~~~v~~~~~~ 116 (312)
..........|.++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 33222233455555554
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00091 Score=57.48 Aligned_cols=160 Identities=21% Similarity=0.223 Sum_probs=93.6
Q ss_pred cCCEEEEEEccCCCeEEEE---cCC-CeEEEEeCCCCcee-eeeeecccccEEEEEEecCCCEEEEe-ecCCc--EEEEE
Q 021459 64 SEGISDLAWSSDSHYICSA---SDD-RTLRIWDARTPFDC-LKTLRGHSDFVFCVNFNPQSNLIVSG-SFDES--IRIWE 135 (312)
Q Consensus 64 ~~~v~~~~~~~~~~~l~~~---~~d-~~v~~wd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~--i~~wd 135 (312)
...+..-+|+|++..++-. ... ..+.++++.++... +....++ -...+|+|||+.++.+ ..||. |+++|
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence 3456667899998765533 222 35888898775432 2223333 3457899999876544 45554 66778
Q ss_pred cCCCeEEEEeeecCcCeEEEEEccCCCEEEEee-CCCe--EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec
Q 021459 136 VKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS-HDGT--CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL 212 (312)
Q Consensus 136 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
+..++..+ +..-...-..-.|+|||+.++-.+ ..|. |.+.|...+... .+... ...-..-.|+|||++++..+.
T Consensus 269 l~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~~-~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 269 LDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTFS-GGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred CCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Eeecc-CCCCcCccCCCCCCEEEEEec
Confidence 88776443 322222223557899999877544 4454 455565554432 22211 122225569999999988764
Q ss_pred C-Ce--EEEEEcCCCcEEEE
Q 021459 213 D-ST--LKLWNYSAGKFLKI 229 (312)
Q Consensus 213 d-~~--i~v~d~~~~~~~~~ 229 (312)
+ |. |.+.|+.++...+.
T Consensus 346 ~~g~~~i~~~~~~~~~~~~~ 365 (425)
T COG0823 346 SGGQWDIDKNDLASGGKIRI 365 (425)
T ss_pred cCCceeeEEeccCCCCcEEE
Confidence 3 44 66666665554333
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.08 E-value=0.0056 Score=52.94 Aligned_cols=143 Identities=15% Similarity=0.210 Sum_probs=80.0
Q ss_pred ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE
Q 021459 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT 142 (312)
Q Consensus 63 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 142 (312)
.......+.++|+|++++.+ .||...++..... .... .+......|.+ .+.+++-...++|.++.--..+..
T Consensus 31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~-r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW-RNKA-----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT-EEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT
T ss_pred CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC-cccc-----cCceeEEEEec-CccEEEEECCCeEEEEEcCccccc
Confidence 33457789999999999885 5788888874332 2111 23344577888 456777777888999632222211
Q ss_pred EEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC
Q 021459 143 RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS 222 (312)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 222 (312)
..++. ...+..+.. |.+|...+.+ .|.+||..+++.++++.. ..+..+.|+++|.+++..+.+ .+.+++..
T Consensus 103 k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 103 KSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV---SAVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp ------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred eEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec---CCCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 22222 123444432 7777766555 899999999998888742 236788899999999988755 67777654
No 346
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.0054 Score=52.38 Aligned_cols=200 Identities=17% Similarity=0.186 Sum_probs=132.3
Q ss_pred EEEECCCCCEE-EEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcC---CCeEEEEeCCCCceeeee
Q 021459 27 CVKFSNDGTLL-ASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASD---DRTLRIWDARTPFDCLKT 102 (312)
Q Consensus 27 ~~~~s~~~~~l-~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~v~~wd~~~~~~~~~~ 102 (312)
.++.++.++.+ ++...++.|.+.|..+........-- .....++++++++.+..+.. ++.+.+.|..+... ...
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~-~~~ 155 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV-TAT 155 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE-EEE
Confidence 56777777744 44445688999997766665544322 25568999999987776655 57788888776433 333
Q ss_pred eecccccEEEEEEecCCCEEEEee-cCCcEEEEEcCCCeEEE-----EeeecCcCeEEEEEccCCCEEEEeeCC---CeE
Q 021459 103 LRGHSDFVFCVNFNPQSNLIVSGS-FDESIRIWEVKTGKCTR-----VIRAHSMPVTSVHFNRDGSLIVSGSHD---GTC 173 (312)
Q Consensus 103 ~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~~wd~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i 173 (312)
...-..+ ..+++.|+++.++... .++.|.+.|.......+ ...... .-..+.++|++..+.+.... +.+
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGT-GPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCC-CCceEEECCCCCEEEEEeccCCCceE
Confidence 3322233 6789999999766655 67889999977665442 111122 23568899999966554443 589
Q ss_pred EEEeCCCCceeeE-cccCCCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCcEEEEEE
Q 021459 174 KIWDAGEGACLKT-LIDDKDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGKFLKIYT 231 (312)
Q Consensus 174 ~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~ 231 (312)
...|..++..... ...... ....+..+|+|+.+.+.. ..+.+.+.|..+........
T Consensus 234 ~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred EEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 9999988776654 222222 334466899999888874 44889999988777665543
No 347
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.99 E-value=0.01 Score=52.58 Aligned_cols=194 Identities=16% Similarity=0.189 Sum_probs=110.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCcceEEEeeeccC------CEE--EEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee-
Q 021459 34 GTLLASASLDKTVIIWSASSLALVHRFVGHSE------GIS--DLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR- 104 (312)
Q Consensus 34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~- 104 (312)
+..++.++.++.+.-.|..+++.+.+...... .+. .+... ++..++.++.++.|..+|.+++...-+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 45566777789999999999887766543222 000 11111 225777888899999999988754322211
Q ss_pred ccc--c-cE-EEEEEecCCCEEEEee---------cCCcEEEEEcCCCeEEEEeeecCc--------------------C
Q 021459 105 GHS--D-FV-FCVNFNPQSNLIVSGS---------FDESIRIWEVKTGKCTRVIRAHSM--------------------P 151 (312)
Q Consensus 105 ~~~--~-~v-~~~~~~~~~~~l~s~~---------~dg~i~~wd~~~~~~~~~~~~~~~--------------------~ 151 (312)
.+. . .+ ....+. +..++.++ .+|.+.-+|..+|+.+-.++.... .
T Consensus 140 ~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 110 0 01 111122 23444443 367888999999987655543211 0
Q ss_pred e-EEEEEccCCCEEEEeeCCC------------------eEEEEeCCCCceeeEcccCCCC--------cEEEEEE-CCC
Q 021459 152 V-TSVHFNRDGSLIVSGSHDG------------------TCKIWDAGEGACLKTLIDDKDP--------AVSFAKF-SPN 203 (312)
Q Consensus 152 v-~~~~~~~~~~~l~~~~~d~------------------~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~-~~~ 203 (312)
+ ...++.+.+..++.++.++ .+.-+|..+++..=........ ....... .-+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1234444456677776554 6888899888776543221110 0001111 123
Q ss_pred CC---EEEEEecCCeEEEEEcCCCcEEEEE
Q 021459 204 GK---FILVGTLDSTLKLWNYSAGKFLKIY 230 (312)
Q Consensus 204 ~~---~l~~~~~d~~i~v~d~~~~~~~~~~ 230 (312)
+. .+++++.+|.+..+|.++|+.+-..
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEe
Confidence 33 5777888999999999999876544
No 348
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.97 E-value=0.0062 Score=49.54 Aligned_cols=228 Identities=17% Similarity=0.185 Sum_probs=122.9
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee---------
Q 021459 32 NDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT--------- 102 (312)
Q Consensus 32 ~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~--------- 102 (312)
..++.|+.|..+| +.+++........++. +...|..+...++-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578899998888 8888883322222222 233499999999888777664 599999998642211100
Q ss_pred ----eecccccEEEEE--EecCCCEEEEeecCCcEEEEEcCCC-----eEEEEeeecCcCeEEEEEccCCCEEEEeeCCC
Q 021459 103 ----LRGHSDFVFCVN--FNPQSNLIVSGSFDESIRIWEVKTG-----KCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDG 171 (312)
Q Consensus 103 ----~~~~~~~v~~~~--~~~~~~~l~s~~~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
.......+...+ -...+...+.......|.+|..... +..+.+.. ...+..+.|. ++.++.|..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~--~~~i~v~~~~- 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL--GNKICVGTSK- 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe--CCEEEEEeCC-
Confidence 001112233333 1123344444455568888877543 23334332 3567888888 4467776655
Q ss_pred eEEEEeCCCCceeeEcccCC-----------CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE--EEEccCCcee
Q 021459 172 TCKIWDAGEGACLKTLIDDK-----------DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK--IYTGHTNKKY 238 (312)
Q Consensus 172 ~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~ 238 (312)
...+.|+.++....-+.... ...+.....+ ++.+|++. +..-.+.|. .|+..+ .+.....+
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~p-- 231 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSAP-- 231 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEcCCch--
Confidence 47788888654432211110 1123333333 34555543 323333343 343322 22222221
Q ss_pred EEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccC
Q 021459 239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDG 277 (312)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 277 (312)
....+. ..+|+..+. +.|.+|++.++++++.+..
T Consensus 232 -~~~~~~---~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 232 -QSVAYS---SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred -hEEEEE---CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 111222 346766655 4599999999988888764
No 349
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.94 E-value=3.4e-05 Score=41.16 Aligned_cols=36 Identities=50% Similarity=0.746 Sum_probs=32.5
Q ss_pred eeeecccccceEEEEECCCCCEEEEEeCCCeEEEEe
Q 021459 15 FKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWS 50 (312)
Q Consensus 15 ~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~ 50 (312)
...+..|...|.++.|+++++++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456678999999999999999999999999999995
No 350
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.93 E-value=0.011 Score=51.21 Aligned_cols=202 Identities=16% Similarity=0.192 Sum_probs=105.4
Q ss_pred ceEEEEECCCCCEEEEE-eCC----CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC-----------Ce
Q 021459 24 AVSCVKFSNDGTLLASA-SLD----KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD-----------RT 87 (312)
Q Consensus 24 ~v~~~~~s~~~~~l~t~-~~d----~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~ 87 (312)
.+...++||+|+++|-+ +.. ..++++|+.+++.+......... ..+.|.++++.++-...+ ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467899999988754 333 35899999999776533222221 239999998766544322 24
Q ss_pred EEEEeCCCCcee-eeeeecc-ccc-EEEEEEecCCCEEEEeecC----CcEEEEEcCCC----eEEEEeeecCcCe-EEE
Q 021459 88 LRIWDARTPFDC-LKTLRGH-SDF-VFCVNFNPQSNLIVSGSFD----ESIRIWEVKTG----KCTRVIRAHSMPV-TSV 155 (312)
Q Consensus 88 v~~wd~~~~~~~-~~~~~~~-~~~-v~~~~~~~~~~~l~s~~~d----g~i~~wd~~~~----~~~~~~~~~~~~v-~~~ 155 (312)
|+.|.+.++... ...+... ... ...+..++|+++++..... ..+.+.|+..+ .....+......+ ..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 788888765432 1122222 223 5678889999986643332 34777788764 2233333333333 333
Q ss_pred EEccCCCEEEEee---CCCeEEEEeCCCCce--eeEcccCCCCcEEEEEECCCCCEEEEEe-cCC--eEEEEEcCCCcEE
Q 021459 156 HFNRDGSLIVSGS---HDGTCKIWDAGEGAC--LKTLIDDKDPAVSFAKFSPNGKFILVGT-LDS--TLKLWNYSAGKFL 227 (312)
Q Consensus 156 ~~~~~~~~l~~~~---~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~--~i~v~d~~~~~~~ 227 (312)
... ++.+++... ..+.|...++..... -......+........+...+++|+... .++ .|+++++..+...
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEE
Confidence 333 444444332 335666667765542 1112222333233334445555665543 333 5788888733333
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.91 E-value=0.012 Score=50.76 Aligned_cols=193 Identities=20% Similarity=0.211 Sum_probs=100.5
Q ss_pred EEEECCCCCEEEEEeCC-----------CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459 27 CVKFSNDGTLLASASLD-----------KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART 95 (312)
Q Consensus 27 ~~~~s~~~~~l~t~~~d-----------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~ 95 (312)
.++.+|.|..||....+ ..|++|+.. |+++..+.-..+.+.++.|+.+.+++ ....||.+++||+..
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFG 110 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCC
Confidence 35667877777766444 158888755 45555555444889999998866544 556899999999864
Q ss_pred Cce-----eeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe-EEEEee---e-----cCcC-eE-EEEEcc
Q 021459 96 PFD-----CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK-CTRVIR---A-----HSMP-VT-SVHFNR 159 (312)
Q Consensus 96 ~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~---~-----~~~~-v~-~~~~~~ 159 (312)
..+ ......-....+....+...|-.+++ .++.+.+..-.... ..+.+. . +... .. ...++.
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~ 188 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS 188 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec
Confidence 220 01111111112222233334433343 33444433221111 111110 0 0000 00 022333
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459 160 DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK 228 (312)
Q Consensus 160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 228 (312)
+....+....++.+.+.+..... .+ . ....+..++.||+++++|.-..+|.+.+....-.+.+.
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~---~i-~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~ 252 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFK---QI-D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLC 252 (410)
T ss_pred CcceEEEEecCCEEEEEEccccc---cc-c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeE
Confidence 44444444455555544322211 11 1 12457778899999999999999999888654444433
No 352
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=9.6e-05 Score=63.80 Aligned_cols=93 Identities=22% Similarity=0.312 Sum_probs=74.2
Q ss_pred ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeE-EEEEccCCCEEEEeeCCCeEEEEeCCCCceeeE
Q 021459 108 DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVT-SVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKT 186 (312)
Q Consensus 108 ~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (312)
..+.-+.|+|.-..+|.+..+|.|-+..++ -+.+.++..+...++ +++|.|||+.++.|-.||+|++.|..++..+..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 356778999999999999999999999888 445667776777777 999999999999999999999999999887766
Q ss_pred cccCCCCcEEEEEEC
Q 021459 187 LIDDKDPAVSFAKFS 201 (312)
Q Consensus 187 ~~~~~~~~~~~~~~~ 201 (312)
........+....|+
T Consensus 100 ~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 100 FLFSVETDISKGIWD 114 (665)
T ss_pred cccccccchheeecc
Confidence 433333445555555
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.013 Score=50.18 Aligned_cols=261 Identities=15% Similarity=0.155 Sum_probs=150.1
Q ss_pred ceEEEEECCCCCEEEEEe-CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEE-EEcCCCeEEEEeCCCCceeee
Q 021459 24 AVSCVKFSNDGTLLASAS-LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYIC-SASDDRTLRIWDARTPFDCLK 101 (312)
Q Consensus 24 ~v~~~~~s~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~v~~wd~~~~~~~~~ 101 (312)
....+...|++..+.... ....+..-+............-...-..++.++.+..+. +...+..|.+.|..+....-.
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 344567777775443332 222344444431111111111112234678888887444 444568899999665322211
Q ss_pred eeecccccEEEEEEecCCCEEEEeec---CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee-CCCeEEEEe
Q 021459 102 TLRGHSDFVFCVNFNPQSNLIVSGSF---DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS-HDGTCKIWD 177 (312)
Q Consensus 102 ~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd 177 (312)
...+. .-..++++|+++.+..+.. ++++.+.|..+++.......-..+ ..++++|+|+.+.... .++.+.+.|
T Consensus 112 ~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 112 IPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred eeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence 11222 3456889999987776655 688999998888877775443345 8899999999666554 788999999
Q ss_pred CCCCceee-Ec--ccCCCCcEEEEEECCCCCEEEEEecC---CeEEEEEcCCCcEEEE-EEccCCceeEEEEEEEccCCc
Q 021459 178 AGEGACLK-TL--IDDKDPAVSFAKFSPNGKFILVGTLD---STLKLWNYSAGKFLKI-YTGHTNKKYCITSTFSVTNGK 250 (312)
Q Consensus 178 ~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 250 (312)
.......+ .. .......-..+.++|+|..+.+.... +.+...|..++..... ...... .... ....+++.
T Consensus 189 ~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~--~~~~-v~~~p~g~ 265 (381)
T COG3391 189 TSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG--APRG-VAVDPAGK 265 (381)
T ss_pred CCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC--CCCc-eeECCCCC
Confidence 76654442 10 00111223446789999976665433 5888888887766543 211111 1111 12336677
Q ss_pred EEEEe-ecCCeEEEEECCchheeecccCCc---cceEEEEEcCC
Q 021459 251 YIVSG-SEDNCVYVWDLQQKTMIQKLDGHT---DSVISVTCHPT 290 (312)
Q Consensus 251 ~l~~~-~~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~~p~ 290 (312)
.+... +..+.+.+-|..+........... ..+..+++.+.
T Consensus 266 ~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 266 AAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 76665 445889999888766665543322 23445555443
No 354
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.88 E-value=0.011 Score=49.33 Aligned_cols=174 Identities=16% Similarity=0.204 Sum_probs=100.1
Q ss_pred CeEEEEeCCCcceEEEeeec-cCCEEEEE---EccC----CCeEEEEcC----------CCeEEEEeCCCC-c--eeeee
Q 021459 44 KTVIIWSASSLALVHRFVGH-SEGISDLA---WSSD----SHYICSASD----------DRTLRIWDARTP-F--DCLKT 102 (312)
Q Consensus 44 ~~i~vw~~~~~~~~~~~~~~-~~~v~~~~---~~~~----~~~l~~~~~----------d~~v~~wd~~~~-~--~~~~~ 102 (312)
..|++.|..+.+.+..+.-. .+.+.+++ +..+ ..+++.|.. .|.+.++++... . ..++.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888887776655432 23344443 3332 457776642 288999998763 1 11222
Q ss_pred --eecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCe-EEEEeee-cCcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459 103 --LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGK-CTRVIRA-HSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178 (312)
Q Consensus 103 --~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (312)
.....++|.+++-- ++ .++.+ .++.|.+|++...+ ....-.. ....+.++.. .++++++|.....+.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEE
Confidence 23356788888755 33 44443 35789999998777 3332221 2234555544 4568999988888887643
Q ss_pred CC-CceeeEcccC-CCCcEEEEEECCCCCEEEEEecCCeEEEEEcC
Q 021459 179 GE-GACLKTLIDD-KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS 222 (312)
Q Consensus 179 ~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 222 (312)
.. ...+..+..+ ....+..+.+-++++.++++..+|.+.++...
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 32 2222222222 23335555565555789999999999998875
No 355
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.84 E-value=8.8e-05 Score=39.46 Aligned_cols=38 Identities=39% Similarity=0.837 Sum_probs=33.1
Q ss_pred ceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe
Q 021459 55 ALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD 92 (312)
Q Consensus 55 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd 92 (312)
+....+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556677888999999999999999999999999996
No 356
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.0067 Score=47.90 Aligned_cols=233 Identities=12% Similarity=0.160 Sum_probs=121.5
Q ss_pred EEEEECCCCC-EEEEEeCCCeE-EEEeCCCcceEEEeeeccCCE--EEEEEccCCCeEEEEcCC-----CeEEEEeCCCC
Q 021459 26 SCVKFSNDGT-LLASASLDKTV-IIWSASSLALVHRFVGHSEGI--SDLAWSSDSHYICSASDD-----RTLRIWDARTP 96 (312)
Q Consensus 26 ~~~~~s~~~~-~l~t~~~d~~i-~vw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d-----~~v~~wd~~~~ 96 (312)
..+.|+|-.. -++.+..-|+. .++|.+..+....+...++.= -.=+|+|||.+|...-.| |.|-+||.+..
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 3456666443 45555555554 567777665443332211110 013589999999876433 78999999876
Q ss_pred ceeeeeeecccccEEEEEEecCCCEEEEeec------------------CCcEEEEEcCCCeEEEE--ee--ecCcCeEE
Q 021459 97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF------------------DESIRIWEVKTGKCTRV--IR--AHSMPVTS 154 (312)
Q Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------------------dg~i~~wd~~~~~~~~~--~~--~~~~~v~~ 154 (312)
.+.+..+..|.-.-..+.+.+||+.++.+.. +-++.+.|..+|+.+.. +. .+...+..
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 6666666666655567888999998876643 11233334334433321 11 23445778
Q ss_pred EEEccCCCEEEEeeCCCeEE-----EEeCCCCceeeEcccCC------CCcEEEEEECCCCCEEEEEecC-CeEEEEEcC
Q 021459 155 VHFNRDGSLIVSGSHDGTCK-----IWDAGEGACLKTLIDDK------DPAVSFAKFSPNGKFILVGTLD-STLKLWNYS 222 (312)
Q Consensus 155 ~~~~~~~~~l~~~~~d~~i~-----iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~d-~~i~v~d~~ 222 (312)
++..+||+.++.+-..|.-. +=..+.++.+..+.... ..-+..++.+.+..+++..+-. +..-+||..
T Consensus 231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~ 310 (366)
T COG3490 231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAA 310 (366)
T ss_pred eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcC
Confidence 88888887766554433210 00011111111110000 0112233444444455555444 456789999
Q ss_pred CCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEE
Q 021459 223 AGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWD 265 (312)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd 265 (312)
++..+..-.-.. +.... ....-++..+.+|.+.++.
T Consensus 311 tG~vv~~a~l~d----aaGva---~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 311 TGAVVSEAALPD----AAGVA---AAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCcEEecccccc----cccce---eccCceEEecCCceEEecc
Confidence 998765321110 11111 1122345556788888774
No 357
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.82 E-value=0.0012 Score=60.36 Aligned_cols=136 Identities=16% Similarity=0.162 Sum_probs=85.8
Q ss_pred eCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCC-------CCEEEEEecCCeEEEEEcCCCc-EEEEEEccC-Ccee
Q 021459 168 SHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPN-------GKFILVGTLDSTLKLWNYSAGK-FLKIYTGHT-NKKY 238 (312)
Q Consensus 168 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~-~~~~ 238 (312)
.....++-.|+..|+.+.....+....+. .+.|+ ....++|-.++.+..||.+-.. .+-.-..+. ....
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~--~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVV--DIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCccee--EecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCC
Confidence 34577888999999988877655444332 33332 2345667778899999987532 211111111 0111
Q ss_pred EEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 239 CITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
...+... ....+||.|+.+|.|++||--...--..+++-..+|..|..+.||+++++.. +..+.|.+
T Consensus 579 ~Fs~~aT-t~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc---~tyLlLi~ 645 (794)
T PF08553_consen 579 NFSCFAT-TEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC---KTYLLLID 645 (794)
T ss_pred CceEEEe-cCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee---cceEEEEE
Confidence 1222222 3455899999999999999543332234667789999999999999988765 34565554
No 358
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.79 E-value=0.014 Score=47.87 Aligned_cols=244 Identities=13% Similarity=0.150 Sum_probs=128.4
Q ss_pred EEEECCCCCEEEEEe----------CCCeEEEEeCCCcceEEEeeeccC-C------EEEEEEccCCCeEEEEcC--CCe
Q 021459 27 CVKFSNDGTLLASAS----------LDKTVIIWSASSLALVHRFVGHSE-G------ISDLAWSSDSHYICSASD--DRT 87 (312)
Q Consensus 27 ~~~~s~~~~~l~t~~----------~d~~i~vw~~~~~~~~~~~~~~~~-~------v~~~~~~~~~~~l~~~~~--d~~ 87 (312)
.+..+|+++.++++. ..-.|.+||..+......+.-... . ...++++.|+++++.... .-+
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 467899999887643 345789999999887765543322 1 123566777776665432 345
Q ss_pred EEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcC-CCeEEEEe----eecCcCeE-EEEEccCC
Q 021459 88 LRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK-TGKCTRVI----RAHSMPVT-SVHFNRDG 161 (312)
Q Consensus 88 v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~-~~~~~~~~----~~~~~~v~-~~~~~~~~ 161 (312)
|.|-|+... +.+..+.-. + + ...|-..+.-+.+-+.||++....+. .|+..... .....++. .-++...+
T Consensus 120 VtVVDl~~~-kvv~ei~~P-G-C-~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 120 VTVVDLAAK-KVVGEIDTP-G-C-WLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEETTTT-EEEEEEEGT-S-E-EEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred EEEEECCCC-ceeeeecCC-C-E-EEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 677777653 334333211 1 1 11221122457777889999888886 45443221 11122222 22344444
Q ss_pred CEEEEeeCCCeEEEEeCCCCceee--Ec--ccC-------CCCcEEEEEECCCCCEEEEEec---C-------CeEEEEE
Q 021459 162 SLIVSGSHDGTCKIWDAGEGACLK--TL--IDD-------KDPAVSFAKFSPNGKFILVGTL---D-------STLKLWN 220 (312)
Q Consensus 162 ~~l~~~~~d~~i~iwd~~~~~~~~--~~--~~~-------~~~~~~~~~~~~~~~~l~~~~~---d-------~~i~v~d 220 (312)
..++-.+.+|.|+-.|+....... .. ... .......+++++..+.|.+--. + ..|-++|
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 445546788888888876544211 11 100 0011223456554444444221 1 1478889
Q ss_pred cCCCcEEEEEEccCCceeEEEEEEEccCCcEEEE-eecCCeEEEEECCchheeecccC
Q 021459 221 YSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVS-GSEDNCVYVWDLQQKTMIQKLDG 277 (312)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~ 277 (312)
+.+++.+..+.... ....+.. ...+..+|++ ...++.+.+||..+++++..+++
T Consensus 276 ~~t~krv~Ri~l~~-~~~Si~V--sqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 276 LKTHKRVARIPLEH-PIDSIAV--SQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TTTTEEEEEEEEEE-EESEEEE--ESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCCeEEEEEeCCC-ccceEEE--ccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 99988887765322 1222332 3333445544 45689999999999988877764
No 359
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.75 E-value=0.012 Score=45.96 Aligned_cols=138 Identities=15% Similarity=0.061 Sum_probs=87.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEE
Q 021459 34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCV 113 (312)
Q Consensus 34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~ 113 (312)
..+++.|+-.+.+.--|..++++..+... ...|.+-+.- -|++++.|+..|.+++.+..++.+.. .+......-...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w-~f~~~~~vk~~a 99 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIW-NFVILETVKVRA 99 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhhee-eeeehhhhccce
Confidence 34677788888888889888887654321 1222222111 47789999999999999998874432 222111111234
Q ss_pred EEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEE
Q 021459 114 NFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCK 174 (312)
Q Consensus 114 ~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
...+++..+..++.|+..+.-|.++..++...+.......+-++.|....+..+...|.+.
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence 4578899999999999999999999888777654433333334555223344444445443
No 360
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.74 E-value=0.011 Score=53.16 Aligned_cols=226 Identities=19% Similarity=0.270 Sum_probs=119.1
Q ss_pred CCCeEEEEcCC------CeEEEEeCCCCc-eeeeeeecccccEEEEEEecCCCEEEEeecC-C-----cEEEEEcCCCeE
Q 021459 75 DSHYICSASDD------RTLRIWDARTPF-DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD-E-----SIRIWEVKTGKC 141 (312)
Q Consensus 75 ~~~~l~~~~~d------~~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g-----~i~~wd~~~~~~ 141 (312)
.+.+++.|+.+ ..+..||..+.. .....+. ....-.+++.. ++...++||.+ | ++..||...++-
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 35566677666 357788876541 1122222 11122233333 35788888888 3 577889887763
Q ss_pred EEE--eeecCcCeEEEEEccCCCEEEEeeCCCe-----EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC
Q 021459 142 TRV--IRAHSMPVTSVHFNRDGSLIVSGSHDGT-----CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS 214 (312)
Q Consensus 142 ~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
... +........... -+|.+.++|+.||. +..||..+.+....-.. ...........-+|...++|+.++
T Consensus 362 ~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m-~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM-LTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCC-CcceeeeEEEEECCEEEEEcCcCC
Confidence 321 111111111111 26788899998864 77788877654321111 111122222344778888887554
Q ss_pred ------eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCe-----EEEEECCchh--eeecccCCccc
Q 021459 215 ------TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNC-----VYVWDLQQKT--MIQKLDGHTDS 281 (312)
Q Consensus 215 ------~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~--~~~~~~~h~~~ 281 (312)
.+..||..+++....-.-..... ..... .-++.+.+.|+.||. |..||..+.+ .+..+......
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~-~~g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRS-GFGVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccc-cceEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 46778887776543322111111 11111 236778888887773 6778876543 23223322222
Q ss_pred eEEEEEcCCCceEEEeeecCCe---eEEEEee
Q 021459 282 VISVTCHPTENKIASAGLDGDR---TVRVWVQ 310 (312)
Q Consensus 282 v~~l~~~p~~~~l~~~~~dgd~---~v~iw~~ 310 (312)
+..+.+ ++..++.||.||.. +|..|++
T Consensus 516 ~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp 545 (571)
T KOG4441|consen 516 VGVVVL--GGKLYAVGGFDGNNNLNTVECYDP 545 (571)
T ss_pred ccEEEE--CCEEEEEecccCccccceeEEcCC
Confidence 222333 56778888888753 4444443
No 361
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=4.5e-05 Score=57.73 Aligned_cols=142 Identities=13% Similarity=0.145 Sum_probs=84.1
Q ss_pred EEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCC-cEEEEEEccCCceeEEEE
Q 021459 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAG-KFLKIYTGHTNKKYCITS 242 (312)
Q Consensus 164 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~ 242 (312)
+..-+.++.++-++++..+...+-......... ...-+..+++|+.+|.|++|..... .....+..... .+..
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~---v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e---~i~~ 106 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQR---VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE---SIDL 106 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhccee---ecccCceEEeecccceEEEecCCccchHHHhhhcccc---ccee
Confidence 444566777777776643322111111111122 2223467899999999999987521 11111111111 1221
Q ss_pred E-EEccCCcEEEEeecCCeEEEEECCchheeecccCCc-cceEEEEEcCCCceEEEeeecCCeeEEEEeec
Q 021459 243 T-FSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHT-DSVISVTCHPTENKIASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 243 ~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~~ 311 (312)
. ....++.+..+++.||.|+.|++.....+.....|+ .++..+.....+..++.+-...+..++.|++.
T Consensus 107 ~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 107 GIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 1 222345578899999999999998877777777777 66777777777778877722355788888863
No 362
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.73 E-value=0.0062 Score=54.76 Aligned_cols=146 Identities=13% Similarity=0.203 Sum_probs=82.7
Q ss_pred cceEEEEECCCCCEEEEEe------CCC--eEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC-CeEEEE--
Q 021459 23 RAVSCVKFSNDGTLLASAS------LDK--TVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD-RTLRIW-- 91 (312)
Q Consensus 23 ~~v~~~~~s~~~~~l~t~~------~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~v~~w-- 91 (312)
..+...+++|+|+.++... .|+ .|.+++.. +.......+ .....-.|+|+|..|.+.+.. ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 3677889999999887654 244 34444532 222222222 247788999998877776532 222222
Q ss_pred ---------eCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEE---EEcCCCeE-E---EEeee-cCcCeEE
Q 021459 92 ---------DARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRI---WEVKTGKC-T---RVIRA-HSMPVTS 154 (312)
Q Consensus 92 ---------d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~---wd~~~~~~-~---~~~~~-~~~~v~~ 154 (312)
++..+ +... ...+.|..+.|+|||..++... +|.|.+ -....|.. + ..+.. -...+..
T Consensus 427 ~~~gql~~~~vd~g-e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 427 PATGQLARTPVDAS-AVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CCCceEEEEeccCc-hhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 33221 1111 2245699999999999877655 467776 33344431 1 11221 1223578
Q ss_pred EEEccCCCEEEEeeCCCeEEEEe
Q 021459 155 VHFNRDGSLIVSGSHDGTCKIWD 177 (312)
Q Consensus 155 ~~~~~~~~~l~~~~~d~~i~iwd 177 (312)
+.|.+++.++ ++..++...+|.
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEE
Confidence 8999988854 555554444554
No 363
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.69 E-value=0.016 Score=45.88 Aligned_cols=194 Identities=14% Similarity=0.193 Sum_probs=106.6
Q ss_pred eeecccccEEEEEEecCCCE-EEEeecCCcEEEEEcCCCeEEEEeeecC-cCeEEEEEccCCCEEEEeeCCCeEEEEeCC
Q 021459 102 TLRGHSDFVFCVNFNPQSNL-IVSGSFDESIRIWEVKTGKCTRVIRAHS-MPVTSVHFNRDGSLIVSGSHDGTCKIWDAG 179 (312)
Q Consensus 102 ~~~~~~~~v~~~~~~~~~~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (312)
.+.+-...+..++|+|+.+. +++....+.|..+++ +|+.++.+.... ...-.+++..++.++++--.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 34444556899999998765 455566677877886 477777665433 457788888888777776678899888873
Q ss_pred CCc----e--eeEc----ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC---CcEEEEEE--ccC----CceeEE
Q 021459 180 EGA----C--LKTL----IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA---GKFLKIYT--GHT----NKKYCI 240 (312)
Q Consensus 180 ~~~----~--~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~--~~~----~~~~~~ 240 (312)
... . ...+ .......+..++|+|.++.|+++-...-..+|.+.. ...+.... ... .....-
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 1 1111 112334477889999988888887776677776653 22222211 111 011112
Q ss_pred EEEEEccCCcEEEEeecCCeEEEEECCchheeec--ccC-C------ccceEEEEEcCCCceEEEe
Q 021459 241 TSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQK--LDG-H------TDSVISVTCHPTENKIASA 297 (312)
Q Consensus 241 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~-h------~~~v~~l~~~p~~~~l~~~ 297 (312)
...+.+..+++++...++..|..+|. +++.+.. +.. . -..--.|++.++|..++++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 23456667888888999999999994 4444332 221 1 1245789999998666653
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.68 E-value=0.012 Score=52.92 Aligned_cols=147 Identities=14% Similarity=0.164 Sum_probs=82.2
Q ss_pred CCEEEEEEccCCCeEEEEc------CCC--eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC--------
Q 021459 65 EGISDLAWSSDSHYICSAS------DDR--TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD-------- 128 (312)
Q Consensus 65 ~~v~~~~~~~~~~~l~~~~------~d~--~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-------- 128 (312)
..+.+.+++|+|+.++... .|. .|.+++....... ...+. ......|+|++..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~--lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQ--VLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCccee--eecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4677899999999877654 233 4555554332211 12222 36778999998877766433
Q ss_pred ----CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEE---EeCCCCce-e---eEcccCCCCcEEE
Q 021459 129 ----ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKI---WDAGEGAC-L---KTLIDDKDPAVSF 197 (312)
Q Consensus 129 ----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i---wd~~~~~~-~---~~~~~~~~~~~~~ 197 (312)
+.+.+.++..+.... .....|..+.|+|||..++... ++.|.+ -....+.. + ..+..........
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 223333333332211 2245799999999999888765 467766 33333431 1 1111112222355
Q ss_pred EEECCCCCEEEEEecCCeEEEEE
Q 021459 198 AKFSPNGKFILVGTLDSTLKLWN 220 (312)
Q Consensus 198 ~~~~~~~~~l~~~~~d~~i~v~d 220 (312)
+.|..++.++ ++..++.-.+|.
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEE
Confidence 6788888754 555444444443
No 365
>PHA02713 hypothetical protein; Provisional
Probab=97.67 E-value=0.012 Score=52.91 Aligned_cols=184 Identities=7% Similarity=0.114 Sum_probs=96.4
Q ss_pred CCCEEEEeecC------CcEEEEEcCCCeEEEE--eeecCcCeEEEEEccCCCEEEEeeCCC-----eEEEEeCCCCcee
Q 021459 118 QSNLIVSGSFD------ESIRIWEVKTGKCTRV--IRAHSMPVTSVHFNRDGSLIVSGSHDG-----TCKIWDAGEGACL 184 (312)
Q Consensus 118 ~~~~l~s~~~d------g~i~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~~ 184 (312)
++..++.||.+ ..+..||..+++-... +....... +++ .-+++..+.|+.++ .+..||..+++..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56677777753 3477889877643211 11111111 222 23677778888754 4788998876543
Q ss_pred eEcc-cCCCCcEEEEEECCCCCEEEEEecCC-----------------------eEEEEEcCCCcEEEEEEccCCceeEE
Q 021459 185 KTLI-DDKDPAVSFAKFSPNGKFILVGTLDS-----------------------TLKLWNYSAGKFLKIYTGHTNKKYCI 240 (312)
Q Consensus 185 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~-----------------------~i~v~d~~~~~~~~~~~~~~~~~~~~ 240 (312)
..-. .........+ .-++...+.|+.++ .+..||..+++....-.-...... .
T Consensus 381 ~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~ 457 (557)
T PHA02713 381 MLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-P 457 (557)
T ss_pred ECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-C
Confidence 2111 1111111122 23677777776542 466788777665432111111111 0
Q ss_pred EEEEEccCCcEEEEeecC------CeEEEEECCc---hheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 241 TSTFSVTNGKYIVSGSED------NCVYVWDLQQ---KTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 241 ~~~~~~~~~~~l~~~~~d------g~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
....-++++.+.|+.+ ..+..||..+ .+.+..+.........+++ ++..+++||.||..++-.+++
T Consensus 458 --~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 458 --GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred --cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCc
Confidence 1112356777777654 2467898875 3444444433333333333 778899999888666666655
No 366
>PHA02713 hypothetical protein; Provisional
Probab=97.64 E-value=0.015 Score=52.25 Aligned_cols=189 Identities=8% Similarity=0.057 Sum_probs=93.8
Q ss_pred CCCeEEEEcCC------CeEEEEeCCCCce-eeeeeecccccEEEEEEecCCCEEEEeecCC-----cEEEEEcCCCeEE
Q 021459 75 DSHYICSASDD------RTLRIWDARTPFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE-----SIRIWEVKTGKCT 142 (312)
Q Consensus 75 ~~~~l~~~~~d------~~v~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~ 142 (312)
++...+.|+.+ ..+..||..+..- .+..+...... .+++ .-+++..+.||.++ ++..||..+++-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-FSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-eeEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56666777643 3477788765321 11111111111 1121 23567777887754 4888998876432
Q ss_pred EE--eeecCcCeEEEEEccCCCEEEEeeCCC-----------------------eEEEEeCCCCceeeEcccCCCCcEEE
Q 021459 143 RV--IRAHSMPVTSVHFNRDGSLIVSGSHDG-----------------------TCKIWDAGEGACLKTLIDDKDPAVSF 197 (312)
Q Consensus 143 ~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----------------------~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (312)
.. +.........+ .-+++..+.|+.++ .+..||+.+.+....-.. ..+....
T Consensus 381 ~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-~~~r~~~ 457 (557)
T PHA02713 381 MLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-WTGTIRP 457 (557)
T ss_pred ECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC-CcccccC
Confidence 21 11111111112 22677777777542 477788877654321110 0111111
Q ss_pred EEECCCCCEEEEEecC------CeEEEEEcCC-CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCC--eEEEEECCc
Q 021459 198 AKFSPNGKFILVGTLD------STLKLWNYSA-GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN--CVYVWDLQQ 268 (312)
Q Consensus 198 ~~~~~~~~~l~~~~~d------~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~ 268 (312)
....-+++..+.|+.+ ..+..||..+ ++....-.-.. +...... ..-++++.++|+.+| .+..||..+
T Consensus 458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~-~r~~~~~--~~~~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES-RLSALHT--ILHDNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred cEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc-cccccee--EEECCEEEEEeeecceeehhhcCccc
Confidence 1122356677777654 2467788877 55543221111 1111111 123678889999888 667777765
Q ss_pred hhe
Q 021459 269 KTM 271 (312)
Q Consensus 269 ~~~ 271 (312)
.+-
T Consensus 535 ~~W 537 (557)
T PHA02713 535 YEW 537 (557)
T ss_pred ccc
Confidence 543
No 367
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.64 E-value=0.029 Score=47.94 Aligned_cols=198 Identities=14% Similarity=0.128 Sum_probs=103.3
Q ss_pred eceeeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee--e------ccCCEEEEEEcc-----CC---
Q 021459 13 RHFKTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV--G------HSEGISDLAWSS-----DS--- 76 (312)
Q Consensus 13 ~~~~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~--~------~~~~v~~~~~~~-----~~--- 76 (312)
.....+....++|++++.| |-.++|.|..+|.+.|.|......+..-. . ....|+++.|.- |+
T Consensus 77 ~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 77 LPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp EEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred CchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 3444455668999999997 56699999999999999998776665521 1 234578888862 33
Q ss_pred CeEEEEcCCCeEEEEeCCC-C-ce----eeeeeecccccEEEEE-EecCC--------------------CEEEEeecCC
Q 021459 77 HYICSASDDRTLRIWDART-P-FD----CLKTLRGHSDFVFCVN-FNPQS--------------------NLIVSGSFDE 129 (312)
Q Consensus 77 ~~l~~~~~d~~v~~wd~~~-~-~~----~~~~~~~~~~~v~~~~-~~~~~--------------------~~l~s~~~dg 129 (312)
-.|++|...|.+.+|.+.- . .. .......+.+.+..+. ++.+. +-++....+.
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~ 235 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES 235 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence 3788889999999997641 1 11 1111123445555444 32220 1233334466
Q ss_pred cEEEEEcCCCeEEEEeeecCcCeEEEEE-----ccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCC---CcEEEEEEC
Q 021459 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHF-----NRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD---PAVSFAKFS 201 (312)
Q Consensus 130 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~ 201 (312)
.++++.+.+.+..............+.+ ...+..|++-..+|.++++.+..-+.+....-... ..+....++
T Consensus 236 ~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp EEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred ceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 7999998877655433322222333444 23566788889999999999887555443322110 011123456
Q ss_pred CCCCEEEEEe
Q 021459 202 PNGKFILVGT 211 (312)
Q Consensus 202 ~~~~~l~~~~ 211 (312)
++|+.++..+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 7777555443
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.64 E-value=0.0027 Score=58.18 Aligned_cols=135 Identities=15% Similarity=0.176 Sum_probs=89.5
Q ss_pred CCCeEEEEeCCCcceEEEeeeccCC-EEEEEEcc-----CCCeEEEEcCCCeEEEEeCCCCc-eeeee-e--ecccccEE
Q 021459 42 LDKTVIIWSASSLALVHRFVGHSEG-ISDLAWSS-----DSHYICSASDDRTLRIWDARTPF-DCLKT-L--RGHSDFVF 111 (312)
Q Consensus 42 ~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~d~~v~~wd~~~~~-~~~~~-~--~~~~~~v~ 111 (312)
....+.-.|++.++.+..+..|... |..++=.. +..-.+.|-.+..+..||++-.. +++.. . ........
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4467777899999999998887654 65553321 12344567778899999987542 22211 1 11223445
Q ss_pred EEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459 112 CVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178 (312)
Q Consensus 112 ~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (312)
|++-..+| +++.|+.+|.|++||--..+....+.+-..||..+..+.||+++++.+.. .+.+++.
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 66555554 78999999999999954333333455667899999999999988766554 5666664
No 369
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.028 Score=44.82 Aligned_cols=163 Identities=13% Similarity=0.173 Sum_probs=103.8
Q ss_pred ecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeec-cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC
Q 021459 18 LTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGH-SEGISDLAWSSDSHYICSASDDRTLRIWDARTP 96 (312)
Q Consensus 18 ~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~ 96 (312)
+.+-+..|+++.|+|+.+.|++......-.|+=...|+.+.++.-. -.....+++..++++.++--.++.+.+..+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4555666999999999999999888888888877778877765421 122345778888888887767777777755432
Q ss_pred ceee---------eeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE---EEeeec-------CcCeEEEEE
Q 021459 97 FDCL---------KTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT---RVIRAH-------SMPVTSVHF 157 (312)
Q Consensus 97 ~~~~---------~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~-------~~~v~~~~~ 157 (312)
...+ ......+...-.++|+|..+.|+.+-+..-+.+|........ .....+ -..+.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 1111 111111334567899999999888888777777766533211 111111 124667888
Q ss_pred ccC-CCEEEEeeCCCeEEEEeCCC
Q 021459 158 NRD-GSLIVSGSHDGTCKIWDAGE 180 (312)
Q Consensus 158 ~~~-~~~l~~~~~d~~i~iwd~~~ 180 (312)
++. +.+++.+.+++.+.-.|...
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCC
Confidence 864 45566666677776666543
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.003 Score=53.95 Aligned_cols=132 Identities=19% Similarity=0.245 Sum_probs=84.5
Q ss_pred EEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCC-------EEEEEecCCeEEEEEcCCCc--EEEEEEccC
Q 021459 164 IVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGK-------FILVGTLDSTLKLWNYSAGK--FLKIYTGHT 234 (312)
Q Consensus 164 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~ 234 (312)
+..+.....++-.|+..|+.+.+...+.+ +..+.+.|+.+ .-++|-.++.|.-||.+-.. .+..-+++.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d--i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD--INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC--cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 34555566778888888888776654433 45555555532 12446678889999987432 233333332
Q ss_pred Cc-eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEee
Q 021459 235 NK-KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG 298 (312)
Q Consensus 235 ~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~ 298 (312)
-. .+... ++......+++.||.+|.|++||--...--..+++-..+|..|..+.+|.+++...
T Consensus 427 y~~k~nFs-c~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 427 YSTKNNFS-CFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred cccccccc-eeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 11 11122 22223456899999999999999733333345788889999999999999888654
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.043 Score=45.14 Aligned_cols=201 Identities=13% Similarity=0.078 Sum_probs=109.1
Q ss_pred EEECCCCCEEE-EEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce--eeeee-
Q 021459 28 VKFSNDGTLLA-SASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD--CLKTL- 103 (312)
Q Consensus 28 ~~~s~~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~--~~~~~- 103 (312)
-.|.++...|+ +--..+.|.-|+..+++.. ...+.+.+.++..-..+..|+++. .-+.+++.++... .+...
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~--~~~~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR--VFPSPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE--EEECCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 35677777444 4445677888887755431 222344555555555555565553 2345666543322 11111
Q ss_pred ecc-cccEEEEEEecCCCEEEEeec-----------CCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeC-C
Q 021459 104 RGH-SDFVFCVNFNPQSNLIVSGSF-----------DESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSH-D 170 (312)
Q Consensus 104 ~~~-~~~v~~~~~~~~~~~l~s~~~-----------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 170 (312)
.+. ...-......|+|.+.++-.. -|.|+.+|. .+...+.+..+-..-+.++||||++.+..+.. .
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 111 122345667788776554333 133544454 45555544443444578999999987766544 4
Q ss_pred CeEEEEeCCC--Cc----eeeEcccCCCCcEEEEEECCCCCEEEEEecCC-eEEEEEcCCCcEEEEEEccC
Q 021459 171 GTCKIWDAGE--GA----CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS-TLKLWNYSAGKFLKIYTGHT 234 (312)
Q Consensus 171 ~~i~iwd~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~ 234 (312)
+.|.-|++.. +. ...............++.+.+|.+.+++...| .|..|+.. ++.+..+....
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence 6777776542 11 11111111223334456778888776555554 89999987 88887776553
No 372
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.44 E-value=0.08 Score=47.35 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=86.0
Q ss_pred CEEEEEeCCCeEEEEeCCCcceEEEeeeccCC-EEEEEEcc--CCCeEEEEcC------CCeEEEEeCCCCceeeeeee-
Q 021459 35 TLLASASLDKTVIIWSASSLALVHRFVGHSEG-ISDLAWSS--DSHYICSASD------DRTLRIWDARTPFDCLKTLR- 104 (312)
Q Consensus 35 ~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~------d~~v~~wd~~~~~~~~~~~~- 104 (312)
..++.++.|+.+.-.|..+++.+.+....... -..+.-+| .+..++++.. +|.|..+|.+++...-+...
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence 45667778899999999999887664421100 00111112 1234444432 67888888877543211100
Q ss_pred -c---------------------------c-cccE-EEEEEecCCCEEEEeecC-----C-----------cEEEEEcCC
Q 021459 105 -G---------------------------H-SDFV-FCVNFNPQSNLIVSGSFD-----E-----------SIRIWEVKT 138 (312)
Q Consensus 105 -~---------------------------~-~~~v-~~~~~~~~~~~l~s~~~d-----g-----------~i~~wd~~~ 138 (312)
. + ...+ ..+++.|+.++++.+..+ + +|.-.|+++
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T 280 (527)
T TIGR03075 201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT 280 (527)
T ss_pred CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence 0 0 0111 134666766666655422 2 566678889
Q ss_pred CeEEEEeeecCcCe---------EEEEEccCCC---EEEEeeCCCeEEEEeCCCCcee
Q 021459 139 GKCTRVIRAHSMPV---------TSVHFNRDGS---LIVSGSHDGTCKIWDAGEGACL 184 (312)
Q Consensus 139 ~~~~~~~~~~~~~v---------~~~~~~~~~~---~l~~~~~d~~i~iwd~~~~~~~ 184 (312)
|+..-.++.....+ .-+....+|+ .++.+.++|.+.+.|-++++.+
T Consensus 281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 98876665432221 1222334665 7789999999999999988765
No 373
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.43 E-value=0.053 Score=45.23 Aligned_cols=168 Identities=20% Similarity=0.301 Sum_probs=93.0
Q ss_pred CcEEEEEcCCC----eEEEEe--eecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCc-eeeEcccCCCCcEEEEEEC
Q 021459 129 ESIRIWEVKTG----KCTRVI--RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA-CLKTLIDDKDPAVSFAKFS 201 (312)
Q Consensus 129 g~i~~wd~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~ 201 (312)
|.|.++++... ..+..+ ...+++|+++.-- ++. ++++. .+.+.+|++...+ ....-..+....+..+ .
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl--~ 136 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSL--S 136 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEE--E
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEE--e
Confidence 88999999874 222222 2346788888765 444 44433 4789999988776 4332222222233333 3
Q ss_pred CCCCEEEEEecCCeEEEEEcCC-CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCch-------h-ee
Q 021459 202 PNGKFILVGTLDSTLKLWNYSA-GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQK-------T-MI 272 (312)
Q Consensus 202 ~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~-~~ 272 (312)
..++++++|.....+.++.++. +..+..+.......+...+.+. .+++.++.+..+|.+.++..... . .+
T Consensus 137 ~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l-~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L 215 (321)
T PF03178_consen 137 VFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL-VDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKL 215 (321)
T ss_dssp EETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBE
T ss_pred ccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe-cCCcEEEEEcCCCeEEEEEECCCCcccccccccc
Confidence 3466999999888888876554 3334444443444444444444 23468999999999999877521 1 12
Q ss_pred ecc-cCC-ccceEEE---EEcCC--C------ceEEEeeecCC
Q 021459 273 QKL-DGH-TDSVISV---TCHPT--E------NKIASAGLDGD 302 (312)
Q Consensus 273 ~~~-~~h-~~~v~~l---~~~p~--~------~~l~~~~~dgd 302 (312)
... .-| ...|+++ .+.|. + ..++.++.+|.
T Consensus 216 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~ 258 (321)
T PF03178_consen 216 ERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGS 258 (321)
T ss_dssp EEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-
T ss_pred eeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCE
Confidence 211 112 3567777 44552 2 24777777764
No 374
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0058 Score=56.59 Aligned_cols=98 Identities=21% Similarity=0.312 Sum_probs=72.9
Q ss_pred CCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEE
Q 021459 75 DSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTS 154 (312)
Q Consensus 75 ~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 154 (312)
.+..++.|++.|.+...|+.........-..-.++|.+++|+.+|..++.|-.+|.|.+||+..++..+.+..|..+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 35578888888888888876532211222233578999999999999999999999999999999988888777766544
Q ss_pred E---EEccCCCEEEEeeCCCe
Q 021459 155 V---HFNRDGSLIVSGSHDGT 172 (312)
Q Consensus 155 ~---~~~~~~~~l~~~~~d~~ 172 (312)
+ .+..++..++++...|.
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc
Confidence 3 34456667788777775
No 375
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.39 E-value=0.053 Score=48.87 Aligned_cols=221 Identities=17% Similarity=0.184 Sum_probs=111.6
Q ss_pred CCCCCEEEEEeCCC------eEEEEeCCCcceEEEee-eccCCEEEEEEccCCCeEEEEcCC-C-----eEEEEeCCCCc
Q 021459 31 SNDGTLLASASLDK------TVIIWSASSLALVHRFV-GHSEGISDLAWSSDSHYICSASDD-R-----TLRIWDARTPF 97 (312)
Q Consensus 31 s~~~~~l~t~~~d~------~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-~-----~v~~wd~~~~~ 97 (312)
+..+.+++.||.++ .+..+|..+........ .....-.+++.. ++...++|+.| | .+..||..+..
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 33456777777763 56778877653322111 111222333333 45677788888 3 56778876532
Q ss_pred e-eeeeeecccccEEEEEEecCCCEEEEeecCC-----cEEEEEcCCCeEEEEeeecCcCeEEEE-EccCCCEEEEeeCC
Q 021459 98 D-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE-----SIRIWEVKTGKCTRVIRAHSMPVTSVH-FNRDGSLIVSGSHD 170 (312)
Q Consensus 98 ~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----~i~~wd~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~d 170 (312)
- .+..+....... .++ .-+|...+.||.|| +|..||..+.+-...-. ...+..... ..-+|.+.++|+.+
T Consensus 361 W~~~a~M~~~R~~~-~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDF-GVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred eeccCCccCccccc-eeE-EECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcC
Confidence 1 111111111111 111 12567888888886 48888887765322111 111111111 12367888888855
Q ss_pred C------eEEEEeCCCCceeeEcccCCC-CcEEEEEECCCCCEEEEEecCC-----eEEEEEcCCCcEEEEEEccCCcee
Q 021459 171 G------TCKIWDAGEGACLKTLIDDKD-PAVSFAKFSPNGKFILVGTLDS-----TLKLWNYSAGKFLKIYTGHTNKKY 238 (312)
Q Consensus 171 ~------~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~~~~~~~~~~~~~~~~ 238 (312)
+ .+..||..++.......-... .... ...-++...++|+.|+ +|..||..+.+....-.-.. ...
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~-~rs 514 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS-PRS 514 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc-ccc
Confidence 4 467888887765432111111 1111 2233677888888776 36778887776644311111 111
Q ss_pred EEEEEEEccCCcEEEEeecCCe
Q 021459 239 CITSTFSVTNGKYIVSGSEDNC 260 (312)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~dg~ 260 (312)
... ...-++...+.|+.||.
T Consensus 515 ~~g--~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 515 AVG--VVVLGGKLYAVGGFDGN 534 (571)
T ss_pred ccc--EEEECCEEEEEecccCc
Confidence 111 11235677788877653
No 376
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.34 E-value=0.021 Score=38.60 Aligned_cols=100 Identities=15% Similarity=0.251 Sum_probs=63.1
Q ss_pred eEEEEECC---CC-CEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceee
Q 021459 25 VSCVKFSN---DG-TLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCL 100 (312)
Q Consensus 25 v~~~~~s~---~~-~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~ 100 (312)
|+++++.. || +.|+.|+.|..||+|+-. +.+..+. ..+.|.+++-... ..++.+..+|+|-+|+-... +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R---l 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQR---L 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcce---e
Confidence 56666654 33 579999999999999644 4444444 3467788877666 46777889999999986432 2
Q ss_pred eeeecccccEEEEEE-ec--CC-CEEEEeecCCcEE
Q 021459 101 KTLRGHSDFVFCVNF-NP--QS-NLIVSGSFDESIR 132 (312)
Q Consensus 101 ~~~~~~~~~v~~~~~-~~--~~-~~l~s~~~dg~i~ 132 (312)
-..+.. ..+.++.+ .. || ..|++|-.+|.|-
T Consensus 75 WRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 122221 22444443 33 33 3578887778764
No 377
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.24 E-value=0.094 Score=44.03 Aligned_cols=244 Identities=16% Similarity=0.133 Sum_probs=109.2
Q ss_pred eCCCcceEEEeeeccC-----CEEEEEEccCCCeEEEEcC-CC--eEEEEeCCCCceeeeeeeccc-ccEEEEEEecCCC
Q 021459 50 SASSLALVHRFVGHSE-----GISDLAWSSDSHYICSASD-DR--TLRIWDARTPFDCLKTLRGHS-DFVFCVNFNPQSN 120 (312)
Q Consensus 50 ~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~-d~--~v~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~ 120 (312)
|..++..+.++..+.. ..+.=+|.++|+.|+.++. || .+.+.|+.+.. +.++.... .......++|+.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCC
Confidence 5556655555543222 2223367889976665544 54 56666887742 33333221 2222345678888
Q ss_pred EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEE--ccCCCEEEEeeC----------------------CCeEEEE
Q 021459 121 LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHF--NRDGSLIVSGSH----------------------DGTCKIW 176 (312)
Q Consensus 121 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~----------------------d~~i~iw 176 (312)
.++-...+..|.-.|+++.+....+......+-...| +.++..++-.-. ...|...
T Consensus 94 ~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 94 ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred eEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 7765555668888899998876666655554433444 345555432211 1224445
Q ss_pred eCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC-----eEEEEEcCC-CcEEEEEEccCCceeEEEEEEEccCCc
Q 021459 177 DAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS-----TLKLWNYSA-GKFLKIYTGHTNKKYCITSTFSVTNGK 250 (312)
Q Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (312)
|+.+++....+ . ....+..+.++|....+++-+.+| .-|||-++. +...+.+..+.. ...+.--++.++|.
T Consensus 174 dl~tG~~~~v~-~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 174 DLKTGERKVVF-E-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHEFWVPDGS 250 (386)
T ss_dssp ETTT--EEEEE-E-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEEEE-TTSS
T ss_pred ECCCCceeEEE-e-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-CcccccccccCCCC
Confidence 66666543322 1 234456677888776666654443 125665432 333333333333 23445556677777
Q ss_pred EEEE-----eecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeec
Q 021459 251 YIVS-----GSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLD 300 (312)
Q Consensus 251 ~l~~-----~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~d 300 (312)
.|.- ++.+..|.-+|+.+.+.... ....+...+..++++..++-=|.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~--~~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRL--MEMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEE--EEE-SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEE--EeCCceeeeEEcCCCCEEEecCCC
Confidence 6543 23345677778776544221 122245566678898877655543
No 378
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.23 E-value=0.029 Score=37.95 Aligned_cols=100 Identities=16% Similarity=0.279 Sum_probs=62.8
Q ss_pred EEEEEEcc---CC-CeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE
Q 021459 67 ISDLAWSS---DS-HYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT 142 (312)
Q Consensus 67 v~~~~~~~---~~-~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 142 (312)
|+++++.. +| +.|++|+.|..|++|+-.. .+..+.. .+.+.++..... ..++.+-.+|+|-+|+-.. + +
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~-R-l 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ-R-L 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc-e-e
Confidence 56666654 33 5899999999999998543 3444443 355666766554 6788889999999998532 2 2
Q ss_pred EEeeecCcCeEEEEEcc-CC---CEEEEeeCCCeEE
Q 021459 143 RVIRAHSMPVTSVHFNR-DG---SLIVSGSHDGTCK 174 (312)
Q Consensus 143 ~~~~~~~~~v~~~~~~~-~~---~~l~~~~~d~~i~ 174 (312)
-..+... .+.++.+.. ++ ..|++|=.+|.|-
T Consensus 75 WRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222222 245554433 32 2577777777764
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0085 Score=51.33 Aligned_cols=143 Identities=15% Similarity=0.206 Sum_probs=92.0
Q ss_pred CCCEEE-EEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC-------eEEEEcCCCeEEEEeCCCCce-eeeee
Q 021459 33 DGTLLA-SASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH-------YICSASDDRTLRIWDARTPFD-CLKTL 103 (312)
Q Consensus 33 ~~~~l~-t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~v~~wd~~~~~~-~~~~~ 103 (312)
+.++|+ ++.....+.--|++.|+.+..+.-+.. |.-+.+.|+.+ .-+.|-++..|+-||++-... .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 344444 344555677778999999888887766 66677777643 124567788999999864222 12222
Q ss_pred eccc----ccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459 104 RGHS----DFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178 (312)
Q Consensus 104 ~~~~----~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (312)
++|. ..-.|.+-. ...+++.|+.+|.|++||--..+....+.+-..+|..+..+.+|+++++.+ +..+.+.++
T Consensus 423 q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeec-CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 2221 122343333 345889999999999999632233345666778999999999999877554 445666554
No 380
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.21 E-value=0.00059 Score=51.85 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=72.6
Q ss_pred EEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE-EEeeecCcCeEE-EE
Q 021459 79 ICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT-RVIRAHSMPVTS-VH 156 (312)
Q Consensus 79 l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~~v~~-~~ 156 (312)
+..-+.|+.|.-++++......+...-+.....-+ .-+..++.|+.+|.|++|.....-.. ..+......+.+ +.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 33446677777777654322222222232221111 22467899999999999987621111 011111122222 22
Q ss_pred EccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEE--ecCCeEEEEEcC
Q 021459 157 FNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVG--TLDSTLKLWNYS 222 (312)
Q Consensus 157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~d~~i~v~d~~ 222 (312)
-..++.+..++..+|.|+.|+..-++.+-..-.+.............+.+++.+ +.|..++.|++.
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 223455788999999999999876654433222221222333333344555555 555566666654
No 381
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.1 Score=43.02 Aligned_cols=220 Identities=12% Similarity=0.116 Sum_probs=115.9
Q ss_pred EEEccCCCeEE-EEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeee-
Q 021459 70 LAWSSDSHYIC-SASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRA- 147 (312)
Q Consensus 70 ~~~~~~~~~l~-~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~- 147 (312)
..|.++...|+ +--..+.|.-|+..++...... +.+.+.+...-..+..|+++.. .+.+++..++.....+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence 45677666444 4344567888887654332222 2223333333333445554432 366667665554222211
Q ss_pred ----cCcCeEEEEEccCCCEEEEeeC-----------CCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEe-
Q 021459 148 ----HSMPVTSVHFNRDGSLIVSGSH-----------DGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT- 211 (312)
Q Consensus 148 ----~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 211 (312)
.....+.....|+|.+.++... -|.+..+|. .+...+.. ...-.....++||||++.|..+.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee-cCcEEecCceEECCCCCEEEEEeC
Confidence 1134567888899987775444 133444443 33333322 22122334578999998877774
Q ss_pred cCCeEEEEEcCC--Cc----EEEEEEcc-CCceeEEEEEEEccCCcEEEEeecCC-eEEEEECCchheeecccCCccceE
Q 021459 212 LDSTLKLWNYSA--GK----FLKIYTGH-TNKKYCITSTFSVTNGKYIVSGSEDN-CVYVWDLQQKTMIQKLDGHTDSVI 283 (312)
Q Consensus 212 ~d~~i~v~d~~~--~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~h~~~v~ 283 (312)
..+.|.-|++.. +. ........ ......+ ....+|.+-+++..+| .|..|+.. ++++..+.-....+.
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~---~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGM---AVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCce---EEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 457888887752 11 11111111 1111111 1123566664444443 89999987 777777766657778
Q ss_pred EEEEc-CCCceEEEeeec
Q 021459 284 SVTCH-PTENKIASAGLD 300 (312)
Q Consensus 284 ~l~~~-p~~~~l~~~~~d 300 (312)
+++|- |+.+.|...+..
T Consensus 259 ~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 259 NPAFGGPDLNTLYITSAR 276 (307)
T ss_pred cceEeCCCcCEEEEEecC
Confidence 88884 555665555443
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.15 E-value=0.0021 Score=36.24 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=27.8
Q ss_pred ccceEEEEECCCCCEEEEEeCCCeEEEEeC
Q 021459 22 SRAVSCVKFSNDGTLLASASLDKTVIIWSA 51 (312)
Q Consensus 22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~ 51 (312)
...|.+++|+|..++||.+..+|.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 456999999999999999999999999987
No 383
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.10 E-value=0.16 Score=44.05 Aligned_cols=221 Identities=17% Similarity=0.185 Sum_probs=112.5
Q ss_pred EEEEEccCCCeEEEE-cCCC----eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCC-----------cE
Q 021459 68 SDLAWSSDSHYICSA-SDDR----TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE-----------SI 131 (312)
Q Consensus 68 ~~~~~~~~~~~l~~~-~~d~----~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-----------~i 131 (312)
...+++|+++++|.+ +..| .+++.|+.++......+... ....+.|.++++.|+....+. .|
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 357899999988855 3333 59999999874332222221 112389999988776554332 37
Q ss_pred EEEEcCCCeEE--EEeeecCcC--eEEEEEccCCCEEEEeeCC----CeEEEEeCCCC----ceeeEcccCCCCcEEEEE
Q 021459 132 RIWEVKTGKCT--RVIRAHSMP--VTSVHFNRDGSLIVSGSHD----GTCKIWDAGEG----ACLKTLIDDKDPAVSFAK 199 (312)
Q Consensus 132 ~~wd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~ 199 (312)
+.|.+.+.... ..++..... ...+..++++++++..... ..+.+.|+..+ .....+..........+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 78887765432 444443333 5678889999987753322 34777787764 223333333333333332
Q ss_pred ECCCCCEEEEEe---cCCeEEEEEcCCCc---EEEEEEccCCceeEEEEEEEccCCcEEEEeecCC--eEEEEECC-chh
Q 021459 200 FSPNGKFILVGT---LDSTLKLWNYSAGK---FLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDN--CVYVWDLQ-QKT 270 (312)
Q Consensus 200 ~~~~~~~l~~~~---~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~-~~~ 270 (312)
.. ++.+++... ..+.|...++.... ....+..+........+ ....+.+++....++ .|.++++. ...
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~--~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDV--SLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEE--EEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEE--EEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 22 333444332 33567677776654 22233333332222221 122345555555554 47778888 433
Q ss_pred eeecccCCccceEEEEEcCCCce
Q 021459 271 MIQKLDGHTDSVISVTCHPTENK 293 (312)
Q Consensus 271 ~~~~~~~h~~~v~~l~~~p~~~~ 293 (312)
.......-.+.|..+...++.+.
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~ 384 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDE 384 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SE
T ss_pred EeeecCCcceEEeccCCCCCCCE
Confidence 22221112334556655555543
No 384
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.10 E-value=0.24 Score=46.09 Aligned_cols=276 Identities=15% Similarity=0.166 Sum_probs=137.9
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEe--CCCcceEEEe--eeccCCEEEEEEccCC-CeEEEEcCCCeEEEEeCCCCce
Q 021459 24 AVSCVKFSNDGTLLASASLDKTVIIWS--ASSLALVHRF--VGHSEGISDLAWSSDS-HYICSASDDRTLRIWDARTPFD 98 (312)
Q Consensus 24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~--~~~~~~~~~~--~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~~wd~~~~~~ 98 (312)
+|....+--|..+|..+..||.+.-+. ..++..-.+- .--+.++.--.|+..+ +.+++++ |+=..+|.-+. .-
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n~-kL 662 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSSNG-KL 662 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEecCC-cE
Confidence 333444545567888888899887654 4444332111 1123455555566544 4555544 44444554322 11
Q ss_pred eeeeeecccccEEEEEEecC--CCEEEEeecCCcEEEEEcCCCeEE--EEeeecCcCeEEEEEccCCCEEEEeeCC----
Q 021459 99 CLKTLRGHSDFVFCVNFNPQ--SNLIVSGSFDESIRIWEVKTGKCT--RVIRAHSMPVTSVHFNRDGSLIVSGSHD---- 170 (312)
Q Consensus 99 ~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 170 (312)
....+.- ...-.-+.|+.+ ...++++. .+.+++.-+..-+.+ +++..+ .....+++.+....+.+.+..
T Consensus 663 v~spls~-kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 663 VYSPLSL-KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEeccch-HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccc
Confidence 1111100 000011223222 23344443 445666655432222 222222 234455565533333333221
Q ss_pred ----------CeEEEEeCCCCceeeEcccCCCC---cEEEEEECCC-CCEEEEEec----------CCeEEEEEcCCCcE
Q 021459 171 ----------GTCKIWDAGEGACLKTLIDDKDP---AVSFAKFSPN-GKFILVGTL----------DSTLKLWNYSAGKF 226 (312)
Q Consensus 171 ----------~~i~iwd~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~l~~~~~----------d~~i~v~d~~~~~~ 226 (312)
..++++|..+-+.+........+ .+..+.|..| +.++++|+. .|.|.+|.+.....
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 13566776655444332222222 2333446666 677777752 47788888777444
Q ss_pred EEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEE
Q 021459 227 LKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVR 306 (312)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~ 306 (312)
++....+.-...+.... .-+|+++|. -+..|++|++.+.+.+..-..+..++..+...-.+..++.|-.-+.-++.
T Consensus 820 L~~v~e~~v~Gav~aL~--~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALV--EFNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred eeeeeeeeeccceeehh--hhCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 44433222222222222 235777664 45689999998876666666677788888888888888887654433443
Q ss_pred EE
Q 021459 307 VW 308 (312)
Q Consensus 307 iw 308 (312)
.+
T Consensus 896 ~y 897 (1096)
T KOG1897|consen 896 QY 897 (1096)
T ss_pred EE
Confidence 33
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.0054 Score=56.79 Aligned_cols=105 Identities=18% Similarity=0.276 Sum_probs=72.8
Q ss_pred CCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeE
Q 021459 160 DGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYC 239 (312)
Q Consensus 160 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 239 (312)
.+..++.|+..|.+-..|...+-.....-......++.++|+.+|..++.|-.+|.|.+||...++.++.+..+..+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 45568888888998888876542211111223456888999999999999999999999999999888877665544333
Q ss_pred EEEEEEccCCcEEEEeecCCeEEEEEC
Q 021459 240 ITSTFSVTNGKYIVSGSEDNCVYVWDL 266 (312)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~dg~i~iwd~ 266 (312)
+.......++..+.++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 333333344556777777775 6654
No 386
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.99 E-value=0.14 Score=41.56 Aligned_cols=218 Identities=15% Similarity=0.151 Sum_probs=114.3
Q ss_pred cCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEe--------
Q 021459 74 SDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVI-------- 145 (312)
Q Consensus 74 ~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~-------- 145 (312)
..++.|+.|..+| +.+++........+.. +...|..+...|+-+.+++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3577899998888 8999884332222222 223388888888888777665 499999998654322210
Q ss_pred ------eecCcCeEEEE--EccCCCEEEEeeCCCeEEEEeCCCC-----ceeeEcccCCCCcEEEEEECCCCCEEEEEec
Q 021459 146 ------RAHSMPVTSVH--FNRDGSLIVSGSHDGTCKIWDAGEG-----ACLKTLIDDKDPAVSFAKFSPNGKFILVGTL 212 (312)
Q Consensus 146 ------~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
......+...+ -...+...++......|.+|..... ...+++... ..+..+.|. ++.++.|..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp--~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP--DPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC--CCcEEEEEe--CCEEEEEeC
Confidence 01112233333 1123344444445558888766542 233443322 334455565 557777764
Q ss_pred CCeEEEEEcCCCcEEEEEEccCCc---------eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheee--cccCCccc
Q 021459 213 DSTLKLWNYSAGKFLKIYTGHTNK---------KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQ--KLDGHTDS 281 (312)
Q Consensus 213 d~~i~v~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~h~~~ 281 (312)
+ ...+.|+.++.....+...... ...+. .+..+++++|++- |..-.+.|.. ++... .+.- ...
T Consensus 157 ~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W-~~~ 230 (275)
T PF00780_consen 157 K-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLG-IFQLSDNEFLLCY--DNIGVFVNKN-GEPSRKSTIQW-SSA 230 (275)
T ss_pred C-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceE-EEEeCCceEEEEe--cceEEEEcCC-CCcCcccEEEc-CCc
Confidence 4 5778898877654443211111 11122 2223445666653 3333333432 32222 1221 224
Q ss_pred eEEEEEcCCCceEEEeeecCCeeEEEEee
Q 021459 282 VISVTCHPTENKIASAGLDGDRTVRVWVQ 310 (312)
Q Consensus 282 v~~l~~~p~~~~l~~~~~dgd~~v~iw~~ 310 (312)
...+++. .++|+..+. ..|.||++
T Consensus 231 p~~~~~~--~pyli~~~~---~~iEV~~~ 254 (275)
T PF00780_consen 231 PQSVAYS--SPYLIAFSS---NSIEVRSL 254 (275)
T ss_pred hhEEEEE--CCEEEEECC---CEEEEEEC
Confidence 4566663 356766553 35888765
No 387
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.96 E-value=0.2 Score=42.92 Aligned_cols=81 Identities=15% Similarity=0.322 Sum_probs=55.7
Q ss_pred CeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCC-----------------CEEE-EEec
Q 021459 151 PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNG-----------------KFIL-VGTL 212 (312)
Q Consensus 151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~l~-~~~~ 212 (312)
.+.++..+|++++.++...-|.|.++|+.++..++...+..+..+..+.....+ .+|+ -+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 367889999999888887789999999999888877766555555443322211 1222 2455
Q ss_pred CCeEEEEEcCCCcEEEEEE
Q 021459 213 DSTLKLWNYSAGKFLKIYT 231 (312)
Q Consensus 213 d~~i~v~d~~~~~~~~~~~ 231 (312)
-|.|.||.++.+..+..+.
T Consensus 389 Rg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred CCeEEEEecCCCCEEEEEE
Confidence 6788888888887665543
No 388
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.92 E-value=0.22 Score=42.71 Aligned_cols=82 Identities=12% Similarity=0.228 Sum_probs=54.7
Q ss_pred cEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccC---------------Cc-EEEEeec
Q 021459 194 AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTN---------------GK-YIVSGSE 257 (312)
Q Consensus 194 ~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~l~~~~~ 257 (312)
....+..+|++++.++...=|+|.++|...+..++.+++..+............+ .. +++-+-.
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr 388 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR 388 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence 3456789999998888777799999999999888888776654322211111110 11 2344667
Q ss_pred CCeEEEEECCchheeecc
Q 021459 258 DNCVYVWDLQQKTMIQKL 275 (312)
Q Consensus 258 dg~i~iwd~~~~~~~~~~ 275 (312)
-|.|.||.++++..+..+
T Consensus 389 Rg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 389 RGILEVWSMRQGPRVAAF 406 (415)
T ss_pred CCeEEEEecCCCCEEEEE
Confidence 888999998877665443
No 389
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.89 E-value=0.16 Score=40.69 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=86.6
Q ss_pred ceEEEEECCCCCEEEEEe---CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEe-CCCCcee
Q 021459 24 AVSCVKFSNDGTLLASAS---LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWD-ARTPFDC 99 (312)
Q Consensus 24 ~v~~~~~s~~~~~l~t~~---~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd-~~~~~~~ 99 (312)
.+...+++++++.+|... ....++++..... ..... ....+....|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688899999999877655 3345555543322 22221 223677889999988777766666666663 2222111
Q ss_pred eeeee--cccccEEEEEEecCCCEEEEee---cCCcEEEEEcC---CC--eE----EEEeeecCcCeEEEEEccCCCEEE
Q 021459 100 LKTLR--GHSDFVFCVNFNPQSNLIVSGS---FDESIRIWEVK---TG--KC----TRVIRAHSMPVTSVHFNRDGSLIV 165 (312)
Q Consensus 100 ~~~~~--~~~~~v~~~~~~~~~~~l~s~~---~dg~i~~wd~~---~~--~~----~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
..... .-.+.|..+.++|||..++... .++.|.+--+. .+ .. ..........+..+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 11111 1112799999999999876554 34667766542 22 11 111112245788999999988777
Q ss_pred EeeCCC
Q 021459 166 SGSHDG 171 (312)
Q Consensus 166 ~~~~d~ 171 (312)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665544
No 390
>PHA03098 kelch-like protein; Provisional
Probab=96.85 E-value=0.16 Score=45.71 Aligned_cols=187 Identities=14% Similarity=0.143 Sum_probs=89.4
Q ss_pred cCCCEEEEeecCC------cEEEEEcCCCeEEEEeee--cCcCeEEEEEccCCCEEEEeeCC-----CeEEEEeCCCCce
Q 021459 117 PQSNLIVSGSFDE------SIRIWEVKTGKCTRVIRA--HSMPVTSVHFNRDGSLIVSGSHD-----GTCKIWDAGEGAC 183 (312)
Q Consensus 117 ~~~~~l~s~~~dg------~i~~wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~~~ 183 (312)
.++..++.|+.++ .+..||..+++-...-.. .......+ .-+++.++.|+.+ ..+..||..+++.
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 3455666776542 477888877654321110 11111122 2367777777765 3467788877654
Q ss_pred eeEcccCCCCcEEEEEECCCCCEEEEEecC------CeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeec
Q 021459 184 LKTLIDDKDPAVSFAKFSPNGKFILVGTLD------STLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSE 257 (312)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (312)
...... ..+........-+++..+.|+.+ +.+..||..+++....-...... ..... ...++.+.+.|+.
T Consensus 371 ~~~~~l-p~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r-~~~~~--~~~~~~iyv~GG~ 446 (534)
T PHA03098 371 REEPPL-IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH-YGGCA--IYHDGKIYVIGGI 446 (534)
T ss_pred eeCCCc-CcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc-cCceE--EEECCEEEEECCc
Confidence 321110 01111111122356677777632 45788898776654321111111 11111 1134667777764
Q ss_pred C--------CeEEEEECCchh--eeecccCCccceEEEEEcCCCceEEEeeecCC---eeEEEEeec
Q 021459 258 D--------NCVYVWDLQQKT--MIQKLDGHTDSVISVTCHPTENKIASAGLDGD---RTVRVWVQD 311 (312)
Q Consensus 258 d--------g~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd---~~v~iw~~~ 311 (312)
+ ..+.+||..+.+ .+..+.........+.+ ++..++.||.++. ..|..++++
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred cCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCC
Confidence 3 238888886543 22222211111112222 6667777775533 356666653
No 391
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.84 E-value=0.27 Score=42.51 Aligned_cols=49 Identities=12% Similarity=0.277 Sum_probs=32.3
Q ss_pred eEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCC
Q 021459 87 TLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKT 138 (312)
Q Consensus 87 ~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~ 138 (312)
.|++|+.... .+....-..+.+.++.|..+ +.|+.-..||.+++||+..
T Consensus 62 ~I~iys~sG~--ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSSSGK--LLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECCCCC--EeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCC
Confidence 4777765432 23222212267889999875 5566667899999999863
No 392
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.84 E-value=0.2 Score=41.03 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=71.8
Q ss_pred ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEc-CCCeE
Q 021459 63 HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEV-KTGKC 141 (312)
Q Consensus 63 ~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~-~~~~~ 141 (312)
-...+..+.-+++|+++++++.-..+.-||.....- ....+.-...|..+.|.|++.+.+.+ ..|.|++=+. .....
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~ 220 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET 220 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence 346788888899999998876555556777543211 11122245689999999998776654 7888887662 11111
Q ss_pred EEE----eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEc-ccCCCCcEEEEEECCCCCEEEEEecCCeE
Q 021459 142 TRV----IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL-IDDKDPAVSFAKFSPNGKFILVGTLDSTL 216 (312)
Q Consensus 142 ~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 216 (312)
-.. .......+..++|.++++..++|+...-++--|-... -.+.. .......+..+.|.+..+-++ -+.+|.|
T Consensus 221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGkt-W~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~l 298 (302)
T PF14870_consen 221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKT-WQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVL 298 (302)
T ss_dssp E---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS--EE-GGGTTSSS---EEEEEETTEEEE-E-STTEE
T ss_pred cccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCcc-ceECccccCCCCceEEEEEcCCCceEE-ECCCcEE
Confidence 111 1112234788999998888877666533333332211 11111 112223344445544444444 4467766
Q ss_pred EEE
Q 021459 217 KLW 219 (312)
Q Consensus 217 ~v~ 219 (312)
--|
T Consensus 299 l~~ 301 (302)
T PF14870_consen 299 LRY 301 (302)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 393
>PHA03098 kelch-like protein; Provisional
Probab=96.79 E-value=0.21 Score=44.99 Aligned_cols=187 Identities=12% Similarity=0.157 Sum_probs=85.8
Q ss_pred CCCEEEEEeCCC------eEEEEeCCCcceEEE--eeeccCCEEEEEEccCCCeEEEEcCC-----CeEEEEeCCCCce-
Q 021459 33 DGTLLASASLDK------TVIIWSASSLALVHR--FVGHSEGISDLAWSSDSHYICSASDD-----RTLRIWDARTPFD- 98 (312)
Q Consensus 33 ~~~~l~t~~~d~------~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~v~~wd~~~~~~- 98 (312)
++.+++.||.++ .+..||..+.+.... +....... +++ .-++...+.|+.+ ..+..||..+..-
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455566666542 456677665443211 01001111 121 2256677777765 3466777765321
Q ss_pred eeeeeecccccEEEEEEecCCCEEEEeecC------CcEEEEEcCCCeEEEEeeecC-cCeEEEEEccCCCEEEEeeCC-
Q 021459 99 CLKTLRGHSDFVFCVNFNPQSNLIVSGSFD------ESIRIWEVKTGKCTRVIRAHS-MPVTSVHFNRDGSLIVSGSHD- 170 (312)
Q Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d- 170 (312)
....+.. ...-.+++ .-+++.++.||.+ ..+..||+.+++-...-.... ..-.++ ...++..++.|+.+
T Consensus 372 ~~~~lp~-~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 372 EEPPLIF-PRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKIYVIGGISY 448 (534)
T ss_pred eCCCcCc-CCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEEEEECCccC
Confidence 1111111 11111122 2345667777632 357889988765322111000 001122 22356677777643
Q ss_pred -------CeEEEEeCCCCceeeEcccC-CCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCCcE
Q 021459 171 -------GTCKIWDAGEGACLKTLIDD-KDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAGKF 226 (312)
Q Consensus 171 -------~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~ 226 (312)
..+..||..+++....-... .......+.. +++.++.|+.+ +.+.+||..+.+.
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 23788898876543321100 1111122222 56666777654 4577777766554
No 394
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.76 E-value=0.2 Score=39.91 Aligned_cols=95 Identities=18% Similarity=0.333 Sum_probs=62.9
Q ss_pred EEEEEccC-CCeEEEEcCCCe-EEEEeCCCCceee-------eeeecccccEEEEEEecCCCEEEEeecC-----CcEEE
Q 021459 68 SDLAWSSD-SHYICSASDDRT-LRIWDARTPFDCL-------KTLRGHSDFVFCVNFNPQSNLIVSGSFD-----ESIRI 133 (312)
Q Consensus 68 ~~~~~~~~-~~~l~~~~~d~~-v~~wd~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~~ 133 (312)
..++++|. ..-++.+-.-|+ ..++|.....+.+ +.+.+| -.|+|||.+|+..-.| |.|-+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGH------Gvfs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGH------GVFSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecc------cccCCCCcEEEeecCCCCCCCceEEE
Confidence 35777775 345566655564 4567776543322 123344 3589999998876443 67899
Q ss_pred EEcCCC-eEEEEeeecCcCeEEEEEccCCCEEEEee
Q 021459 134 WEVKTG-KCTRVIRAHSMPVTSVHFNRDGSLIVSGS 168 (312)
Q Consensus 134 wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
||.+.+ +.+..+..|......+.+.+||+.++.+.
T Consensus 145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred EecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 998754 33456667777777889999999888753
No 395
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.73 E-value=0.4 Score=42.97 Aligned_cols=190 Identities=13% Similarity=0.129 Sum_probs=107.2
Q ss_pred CCEEEEEeCCCeEEEEeCCCcceEEEeeecc-CCEEE----------EEEccCCCeEEEEcCCCeEEEEeCCCCceeeee
Q 021459 34 GTLLASASLDKTVIIWSASSLALVHRFVGHS-EGISD----------LAWSSDSHYICSASDDRTLRIWDARTPFDCLKT 102 (312)
Q Consensus 34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~----------~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~ 102 (312)
+..|+.++.++.|.-.|..+++.+.+..... ..+.. +++ .+..++.++.|+.+.-.|..++..+-+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778889889999998877654211 11111 111 2346777788999999998887543322
Q ss_pred eec-cc--ccEEE-EEEecCCCEEEEee------cCCcEEEEEcCCCeEEEEeeecC-----------------------
Q 021459 103 LRG-HS--DFVFC-VNFNPQSNLIVSGS------FDESIRIWEVKTGKCTRVIRAHS----------------------- 149 (312)
Q Consensus 103 ~~~-~~--~~v~~-~~~~~~~~~l~s~~------~dg~i~~wd~~~~~~~~~~~~~~----------------------- 149 (312)
... +. ..+.+ .... ++ .++.+. .+|.|.-+|.++|+.+-.+..-.
T Consensus 147 ~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred ccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 111 11 01111 1111 33 444443 26789999999988664432110
Q ss_pred --------cCe-EEEEEccCCCEEEEeeCC-----C-----------eEEEEeCCCCceeeEcccC-C-----C--CcEE
Q 021459 150 --------MPV-TSVHFNRDGSLIVSGSHD-----G-----------TCKIWDAGEGACLKTLIDD-K-----D--PAVS 196 (312)
Q Consensus 150 --------~~v-~~~~~~~~~~~l~~~~~d-----~-----------~i~iwd~~~~~~~~~~~~~-~-----~--~~~~ 196 (312)
..+ ..+++.|...++..+..+ + .|.-.|+++++..-.+... + + ....
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 011 134566655566555422 1 4555677777654333211 1 1 1122
Q ss_pred EEEECCCCC---EEEEEecCCeEEEEEcCCCcEE
Q 021459 197 FAKFSPNGK---FILVGTLDSTLKLWNYSAGKFL 227 (312)
Q Consensus 197 ~~~~~~~~~---~l~~~~~d~~i~v~d~~~~~~~ 227 (312)
.+....+|+ .++.+..+|.++++|..+++.+
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 233345665 7788999999999999999875
No 396
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.71 E-value=0.21 Score=42.61 Aligned_cols=142 Identities=14% Similarity=0.142 Sum_probs=76.8
Q ss_pred ceEEEEECCCCCEEEEEe-----------CCC-eEEEEeCCC--cce--EEEeeeccCCEEEEEEccCCCeEEEEcCCCe
Q 021459 24 AVSCVKFSNDGTLLASAS-----------LDK-TVIIWSASS--LAL--VHRFVGHSEGISDLAWSSDSHYICSASDDRT 87 (312)
Q Consensus 24 ~v~~~~~s~~~~~l~t~~-----------~d~-~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 87 (312)
....++|.++|++.++-. ..+ .|.+++-.+ ++. ...+.........+++.+++ ++ +++....
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-ly-V~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VY-VATPPDI 92 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EE-EeCCCeE
Confidence 455789999999877742 223 677765432 221 22222223345789998888 44 4444443
Q ss_pred EEEEeCCC------Cceee-eeeec----ccccEEEEEEecCCCEEEEeecC-------------------CcEEEEEcC
Q 021459 88 LRIWDART------PFDCL-KTLRG----HSDFVFCVNFNPQSNLIVSGSFD-------------------ESIRIWEVK 137 (312)
Q Consensus 88 v~~wd~~~------~~~~~-~~~~~----~~~~v~~~~~~~~~~~l~s~~~d-------------------g~i~~wd~~ 137 (312)
.++.|... ..+.+ ..+.. +......+.|.||+.+.++-+.. |.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 33445432 11112 12221 12346678999999877655521 345555555
Q ss_pred CCeEEEEeeecCcCeEEEEEccCCCEEEEee
Q 021459 138 TGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS 168 (312)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
.++....-..+ .....++|+|+|+++++-.
T Consensus 173 g~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 173 GGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 44432221222 2246789999998877644
No 397
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.63 E-value=0.17 Score=44.49 Aligned_cols=149 Identities=11% Similarity=0.254 Sum_probs=86.3
Q ss_pred CCEEEEEEccCCCeEEEEc--CCCeEEEEeCCCCceeeeeeecccccEEEEEEecC----CCEEEEeecCCcEEEEEcC-
Q 021459 65 EGISDLAWSSDSHYICSAS--DDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQ----SNLIVSGSFDESIRIWEVK- 137 (312)
Q Consensus 65 ~~v~~~~~~~~~~~l~~~~--~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~dg~i~~wd~~- 137 (312)
.++..++|..-.+.+++.- .+|.+++=|. ..+ |.-..|..++|.|- ...+++.-....|.+|.+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds----~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS----KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCc----cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4678899974334455532 2333333221 122 23345788999884 3356666778889999885
Q ss_pred ----CCeEEEEeeec---CcC--eEEEEEccCCCEEEEeeCCCeEEEEeCCCCc-eeeEcccCCCCcEEEEEECCCCCEE
Q 021459 138 ----TGKCTRVIRAH---SMP--VTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA-CLKTLIDDKDPAVSFAKFSPNGKFI 207 (312)
Q Consensus 138 ----~~~~~~~~~~~---~~~--v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 207 (312)
+++.+.....+ ..+ -..+.|+|....+++-.....-.+++++... .++.-. ...+.+.+++|.+||+.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEE
Confidence 22222222111 122 2467899998888776665554555554322 222212 345678899999999988
Q ss_pred EEEecC-CeEEEEEcC
Q 021459 208 LVGTLD-STLKLWNYS 222 (312)
Q Consensus 208 ~~~~~d-~~i~v~d~~ 222 (312)
+++-.+ =.-++||-.
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 876433 345788853
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.59 E-value=0.011 Score=33.34 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=27.5
Q ss_pred CcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459 149 SMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178 (312)
Q Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (312)
...|..+.|+|...++|.++.+|.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 346899999999999999999999999987
No 399
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.57 E-value=0.64 Score=43.13 Aligned_cols=29 Identities=21% Similarity=0.207 Sum_probs=23.0
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEE
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIW 49 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw 49 (312)
-.-.|..+.++|+|.+||..|..|...+.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~ 111 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLE 111 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEE
Confidence 44578899999999999999887755443
No 400
>PRK10115 protease 2; Provisional
Probab=96.48 E-value=0.73 Score=42.83 Aligned_cols=112 Identities=10% Similarity=0.126 Sum_probs=63.7
Q ss_pred cceEEEEECCCCCEEEEEe-----CCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC------CeEEEE
Q 021459 23 RAVSCVKFSNDGTLLASAS-----LDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD------RTLRIW 91 (312)
Q Consensus 23 ~~v~~~~~s~~~~~l~t~~-----~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~~w 91 (312)
-.+..+.+|||+++|+.+- ....|++.++.++..+....... -..++|.+|++.|+-...+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 3567789999999887652 22357788888776432221111 1469999998866554332 367778
Q ss_pred eCCCCcee-eeeeecccccEE-EEEEecCCCEEEEeec---CCcEEEEEc
Q 021459 92 DARTPFDC-LKTLRGHSDFVF-CVNFNPQSNLIVSGSF---DESIRIWEV 136 (312)
Q Consensus 92 d~~~~~~~-~~~~~~~~~~v~-~~~~~~~~~~l~s~~~---dg~i~~wd~ 136 (312)
++.++... ...+........ ....+.++++++..+. ++.+.+++.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88776221 112222222222 3333447776554333 356888884
No 401
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.057 Score=50.80 Aligned_cols=185 Identities=18% Similarity=0.145 Sum_probs=104.6
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc-----------eE-----EEeeec-cCCEEEEEEccCCCeEEEE--cC
Q 021459 24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLA-----------LV-----HRFVGH-SEGISDLAWSSDSHYICSA--SD 84 (312)
Q Consensus 24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~-----------~~-----~~~~~~-~~~v~~~~~~~~~~~l~~~--~~ 84 (312)
.-+.++.++....++.++..+.+.|+-..+.- ++ ..+.-| .-.+..+...+|+...++. +.
T Consensus 43 ~sn~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsn 122 (1405)
T KOG3630|consen 43 SSNNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSN 122 (1405)
T ss_pred hhhhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecC
Confidence 34456778877777777777877776433210 00 112222 2345566677776654433 34
Q ss_pred CCeEEEEeCCCCce-------eee---eeecccccEEEEEEecCCC-EEEEeecCCcEEEEEcCCCeEEEEeeecCcCeE
Q 021459 85 DRTLRIWDARTPFD-------CLK---TLRGHSDFVFCVNFNPQSN-LIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVT 153 (312)
Q Consensus 85 d~~v~~wd~~~~~~-------~~~---~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~ 153 (312)
+-.|..||++.-.. .++ ..........++.|+|.-. ..+.+..|+.|++..+........-.......+
T Consensus 123 g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~T 202 (1405)
T KOG3630|consen 123 GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQT 202 (1405)
T ss_pred CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCccccee
Confidence 44788999864111 111 1111223456788887532 345566788888776643221111112234578
Q ss_pred EEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc---cCCCCcEEEEEECCCCCEEEE
Q 021459 154 SVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI---DDKDPAVSFAKFSPNGKFILV 209 (312)
Q Consensus 154 ~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~ 209 (312)
+++|+|.|+.++.|-..|++.-|...- +..+.+. ......+..+.|-....++++
T Consensus 203 av~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 203 AVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred eEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 999999999999999999999886543 2222221 112344566666665556554
No 402
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.25 E-value=0.64 Score=39.74 Aligned_cols=202 Identities=14% Similarity=0.199 Sum_probs=91.3
Q ss_pred cceEEEEEC-----------CCCCEEEEEe-CCCeEEEEeCCCc----ceEEEeee---cc----CCEEEEEEccCCCeE
Q 021459 23 RAVSCVKFS-----------NDGTLLASAS-LDKTVIIWSASSL----ALVHRFVG---HS----EGISDLAWSSDSHYI 79 (312)
Q Consensus 23 ~~v~~~~~s-----------~~~~~l~t~~-~d~~i~vw~~~~~----~~~~~~~~---~~----~~v~~~~~~~~~~~l 79 (312)
++....-|+ .+.++|+..+ .+..|.|.|+.+. ++...++. +. ..-..+..-|+|+++
T Consensus 65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im 144 (461)
T PF05694_consen 65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM 144 (461)
T ss_dssp --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence 455556665 2456777766 6788999998742 23333332 11 122334455789888
Q ss_pred EEEcC------CCeEEEEeCCCCceeeeeeec---ccccEEEEEEecCCCEEEEeec--------------------CCc
Q 021459 80 CSASD------DRTLRIWDARTPFDCLKTLRG---HSDFVFCVNFNPQSNLIVSGSF--------------------DES 130 (312)
Q Consensus 80 ~~~~~------d~~v~~wd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~--------------------dg~ 130 (312)
+++-. -|-+.++|-++ .+.....+. ....-...-|.|..+.++|... ..+
T Consensus 145 IS~lGd~~G~g~Ggf~llD~~t-f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~ 223 (461)
T PF05694_consen 145 ISALGDADGNGPGGFVLLDGET-FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHS 223 (461)
T ss_dssp EEEEEETTS-S--EEEEE-TTT---EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--E
T ss_pred EEeccCCCCCCCCcEEEEcCcc-ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCe
Confidence 87632 24577777664 333333322 2234566778888888888654 357
Q ss_pred EEEEEcCCCeEEEEeeecC--cCeEEEEEcc--CCCE-EEEeeCCCeEEEEeC-CCCcee----eEccc-----C-----
Q 021459 131 IRIWEVKTGKCTRVIRAHS--MPVTSVHFNR--DGSL-IVSGSHDGTCKIWDA-GEGACL----KTLID-----D----- 190 (312)
Q Consensus 131 i~~wd~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~-l~~~~~d~~i~iwd~-~~~~~~----~~~~~-----~----- 190 (312)
+.+||+.+.+.++++.... .....+.|.. +..+ ++.+.-...|..|-. ..+... ..+.. .
T Consensus 224 l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~m 303 (461)
T PF05694_consen 224 LHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEM 303 (461)
T ss_dssp EEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GG
T ss_pred EEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccc
Confidence 9999999999888876432 2244556644 3333 333333444444422 333211 11110 0
Q ss_pred ------CCCcEEEEEECCCCCEEEEEe-cCCeEEEEEcCCCc
Q 021459 191 ------KDPAVSFAKFSPNGKFILVGT-LDSTLKLWNYSAGK 225 (312)
Q Consensus 191 ------~~~~~~~~~~~~~~~~l~~~~-~d~~i~v~d~~~~~ 225 (312)
-.+.++.+.+|.|.++|.++. .+|.|+.||+.+..
T Consensus 304 l~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 304 LKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp GGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 023456777999999988775 58999999997754
No 403
>PHA02790 Kelch-like protein; Provisional
Probab=96.21 E-value=0.82 Score=40.59 Aligned_cols=185 Identities=10% Similarity=0.025 Sum_probs=86.1
Q ss_pred CCCeEEEEcCCC-----eEEEEeCCCCce-eeeeeecccccEEEEEEecCCCEEEEeecC--CcEEEEEcCCCeEEEEee
Q 021459 75 DSHYICSASDDR-----TLRIWDARTPFD-CLKTLRGHSDFVFCVNFNPQSNLIVSGSFD--ESIRIWEVKTGKCTRVIR 146 (312)
Q Consensus 75 ~~~~l~~~~~d~-----~v~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d--g~i~~wd~~~~~~~~~~~ 146 (312)
++.++++|+.++ .+..||..+..- .+..+...... .+++ .-++...+.||.+ .++..||..+++-...-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 345556666542 466788765321 11111111111 1121 2356677777754 358888877654322111
Q ss_pred ecCcCeEEEEEccCCCEEEEeeCCC---eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459 147 AHSMPVTSVHFNRDGSLIVSGSHDG---TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223 (312)
Q Consensus 147 ~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 223 (312)
-...........-+|+..+.|+.++ .+..||..+++........ .+........-+++..+.|+ .+.+||..+
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~ 424 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY-YPHYKSCALVFGRRLFLVGR---NAEFYCESS 424 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC-CccccceEEEECCEEEEECC---ceEEecCCC
Confidence 1110111111223677778777653 4678888776544321111 11111112233566666663 467888877
Q ss_pred CcEEEEEEccCCceeEEEEEEEccCCcEEEEeecC-----CeEEEEECCc
Q 021459 224 GKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSED-----NCVYVWDLQQ 268 (312)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~ 268 (312)
++....-...... ...... .-++++.+.|+.+ ..|..||..+
T Consensus 425 ~~W~~~~~m~~~r-~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 425 NTWTLIDDPIYPR-DNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CcEeEcCCCCCCc-cccEEE--EECCEEEEECCcCCCcccceEEEEECCC
Confidence 7664332111111 111111 2356777777754 2355555543
No 404
>PHA02790 Kelch-like protein; Provisional
Probab=96.10 E-value=0.94 Score=40.23 Aligned_cols=181 Identities=8% Similarity=-0.000 Sum_probs=82.9
Q ss_pred CCCEEEEEeCCC-----eEEEEeCCCcceEE--EeeeccCCEEEEEEccCCCeEEEEcCC--CeEEEEeCCCCc-eeeee
Q 021459 33 DGTLLASASLDK-----TVIIWSASSLALVH--RFVGHSEGISDLAWSSDSHYICSASDD--RTLRIWDARTPF-DCLKT 102 (312)
Q Consensus 33 ~~~~l~t~~~d~-----~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~v~~wd~~~~~-~~~~~ 102 (312)
++.+.+.||.++ .+..||..+.+... .+...... .+++ ..++...+.|+.+ ..+..||..+.. ..+..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 445567777543 45667766543221 11111111 1122 2366666777653 357778865421 11111
Q ss_pred eecccccEEEEEEecCCCEEEEeecCC---cEEEEEcCCCeEEEE--eeecCcCeEEEEEccCCCEEEEeeCCCeEEEEe
Q 021459 103 LRGHSDFVFCVNFNPQSNLIVSGSFDE---SIRIWEVKTGKCTRV--IRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWD 177 (312)
Q Consensus 103 ~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 177 (312)
+...... .++ ..-+++..+.||.++ .+..||.++++-... +...... .++ ..-+++..+.|+ .+..||
T Consensus 349 l~~~r~~-~~~-~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~-~~~~~~IYv~GG---~~e~yd 421 (480)
T PHA02790 349 LLKPRCN-PAV-ASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCA-LVFGRRLFLVGR---NAEFYC 421 (480)
T ss_pred CCCCCcc-cEE-EEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceE-EEECCEEEEECC---ceEEec
Confidence 1111111 111 123566777777653 477888876643221 1101111 122 223666666663 467888
Q ss_pred CCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCC
Q 021459 178 AGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAG 224 (312)
Q Consensus 178 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~ 224 (312)
..+++...... .........+ --+++..++|+.+ ..+..||..++
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~--v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELI--IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEE--EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 87766543211 1111112222 2356677777654 23455555443
No 405
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.08 E-value=0.57 Score=37.58 Aligned_cols=145 Identities=15% Similarity=0.199 Sum_probs=84.3
Q ss_pred CEEEEEEccCCCeEEEEc---CCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEE-cCCCeE
Q 021459 66 GISDLAWSSDSHYICSAS---DDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWE-VKTGKC 141 (312)
Q Consensus 66 ~v~~~~~~~~~~~l~~~~---~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd-~~~~~~ 141 (312)
.+.+.+++++++.++... ....++++........ .+.+ ..+...+|++++...+....+....++. ..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~--~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP--VLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee--eccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 678899999998777665 3345666655433222 1222 3567788999977666655555566653 333332
Q ss_pred EE-Eeeec--CcCeEEEEEccCCCEEEEee---CCCeEEEEeCC---CC--cee---eEcccCCCCcEEEEEECCCCCEE
Q 021459 142 TR-VIRAH--SMPVTSVHFNRDGSLIVSGS---HDGTCKIWDAG---EG--ACL---KTLIDDKDPAVSFAKFSPNGKFI 207 (312)
Q Consensus 142 ~~-~~~~~--~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~---~~--~~~---~~~~~~~~~~~~~~~~~~~~~~l 207 (312)
.. ..... ...|..+.++|||..++... .++.+.+--+. .+ ..+ ..........+..+.|.+++.++
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 21 12211 12799999999999887665 24566554322 22 111 11111223456678899998877
Q ss_pred EEEecCC
Q 021459 208 LVGTLDS 214 (312)
Q Consensus 208 ~~~~~d~ 214 (312)
+.+...+
T Consensus 181 V~~~~~~ 187 (253)
T PF10647_consen 181 VLGRSAG 187 (253)
T ss_pred EEeCCCC
Confidence 7665443
No 406
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.05 E-value=1.3 Score=41.50 Aligned_cols=231 Identities=16% Similarity=0.183 Sum_probs=114.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCC--------EEEEEEc----------------cCCCeEEEEcCCCeEE
Q 021459 34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEG--------ISDLAWS----------------SDSHYICSASDDRTLR 89 (312)
Q Consensus 34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~l~~~~~d~~v~ 89 (312)
+..|..++.++.|.-.|..+++.+.++...... ...+++- .++..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556777788888998999999888776532210 1112221 1344788888899999
Q ss_pred EEeCCCCceeeeeeecccccE-------------EEEEEec--CCCEEEEeec----------CCcEEEEEcCCCeEEEE
Q 021459 90 IWDARTPFDCLKTLRGHSDFV-------------FCVNFNP--QSNLIVSGSF----------DESIRIWEVKTGKCTRV 144 (312)
Q Consensus 90 ~wd~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~s~~~----------dg~i~~wd~~~~~~~~~ 144 (312)
-.|.+++..+-. +. ..+.+ ....-.| .+..++.++. +|.|+-+|.++|+..-.
T Consensus 274 ALDA~TGk~~W~-fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGKLCED-FG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCCEEEE-ec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999888755422 11 11111 0011111 1345566542 58899999999997765
Q ss_pred eeecCcCeEEEEEccCCCEEEEeeCCC-eEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459 145 IRAHSMPVTSVHFNRDGSLIVSGSHDG-TCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223 (312)
Q Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 223 (312)
+..-. +... ...+.++....++.+. ..-.+|...+...... ....+......-.+.. ....+.|.-.|.++
T Consensus 352 ~~~g~-p~~~-~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~pd~~g~~r~~~~-----n~y~~slvALD~~T 423 (764)
T TIGR03074 352 WDPGN-PDPT-APPAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQTPDQWGGDRTPAD-----EKYSSSLVALDATT 423 (764)
T ss_pred EecCC-CCcc-cCCCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCccccccCCccccCc-----ccccceEEEEeCCC
Confidence 53211 1000 0011333333232221 2233444443322111 0000000000000100 11234555567777
Q ss_pred CcEEEEEEccCCce-------eEEEEEEEccCC---cEEEEeecCCeEEEEECCchheeec
Q 021459 224 GKFLKIYTGHTNKK-------YCITSTFSVTNG---KYIVSGSEDNCVYVWDLQQKTMIQK 274 (312)
Q Consensus 224 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 274 (312)
|+..-.++...... ..+.......++ +.++.++++|.+.+.|..+++.+..
T Consensus 424 Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 424 GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 77655444311100 011111111244 3789999999999999998877654
No 407
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.95 E-value=0.71 Score=41.81 Aligned_cols=110 Identities=21% Similarity=0.314 Sum_probs=67.7
Q ss_pred EEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEe--cCCCEEEEeecCCcEEEEEcC-----C-
Q 021459 67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFN--PQSNLIVSGSFDESIRIWEVK-----T- 138 (312)
Q Consensus 67 v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~dg~i~~wd~~-----~- 138 (312)
..-+.-+.-++..++-+....+.|||.+.........-...+.|..+.|. |+++.+++.+....|.+|--. +
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 33444444444444444455799999976532222111346788888885 688899999999999988531 1
Q ss_pred C---eEEEEe--eec-CcCeEEEEEccCCCEEEEeeCCCeEEEEeC
Q 021459 139 G---KCTRVI--RAH-SMPVTSVHFNRDGSLIVSGSHDGTCKIWDA 178 (312)
Q Consensus 139 ~---~~~~~~--~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~ 178 (312)
+ ..++.+ ..+ ..+|.+..|.++|.+++.+ .+.+.++|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 112222 222 2578899999999766544 347788764
No 408
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.85 E-value=0.72 Score=36.81 Aligned_cols=185 Identities=15% Similarity=0.129 Sum_probs=104.5
Q ss_pred ccEEEEEEecCCCEEEEeecCC--cEEEEEcCCCeEEEEeeecC-cCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCcee
Q 021459 108 DFVFCVNFNPQSNLIVSGSFDE--SIRIWEVKTGKCTRVIRAHS-MPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL 184 (312)
Q Consensus 108 ~~v~~~~~~~~~~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (312)
.....+.|..++.++-+.+.-| .|+.+|+.+++......-.. .---.+... +++.....=.++...+||..+-+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence 3455677767777777777665 69999999998765543222 112234443 3344455557788999999887777
Q ss_pred eEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCc--eeEEEEEEEccCCcEEEEeecCCeEE
Q 021459 185 KTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK--KYCITSTFSVTNGKYIVSGSEDNCVY 262 (312)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~ 262 (312)
.++.-..+ -..++ .+++.|+.+..+..++++|..+-+..+.+...... ...+.-.-. -+|...|=.=....|.
T Consensus 124 ~~~~y~~E--GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~-i~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 124 GTFPYPGE--GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY-INGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEE-SSS----EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE-ETTEEEEEETTSSEEE
T ss_pred EEEecCCc--ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEE-EcCEEEEEeCCCCeEE
Confidence 66643322 22232 56778888877889999998777666554432211 111111111 2455555554555666
Q ss_pred EEECCchheeeccc---------------CCccceEEEEEcCCCceEEEee
Q 021459 263 VWDLQQKTMIQKLD---------------GHTDSVISVTCHPTENKIASAG 298 (312)
Q Consensus 263 iwd~~~~~~~~~~~---------------~h~~~v~~l~~~p~~~~l~~~~ 298 (312)
..|..++.....+. ...+-.+.+|+.|..+.|...|
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 66666665543221 1135689999999877666554
No 409
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.84 E-value=0.2 Score=44.06 Aligned_cols=118 Identities=11% Similarity=0.156 Sum_probs=72.5
Q ss_pred ccccceEEEEECCCC----CEEEEEeCCCeEEEEeCC-----CcceEEEeeec---cCCE--EEEEEccCCCeEEEEcCC
Q 021459 20 AHSRAVSCVKFSNDG----TLLASASLDKTVIIWSAS-----SLALVHRFVGH---SEGI--SDLAWSSDSHYICSASDD 85 (312)
Q Consensus 20 ~h~~~v~~~~~s~~~----~~l~t~~~d~~i~vw~~~-----~~~~~~~~~~~---~~~v--~~~~~~~~~~~l~~~~~d 85 (312)
|.-..|..+.|+|-+ ..|++..-.+.|.||-+. ..+.+....++ .-+| ..+.|+|....|++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 445569999999853 345555666899999765 22333222221 1122 357799999888776555
Q ss_pred CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeec-CCcEEEEEcC
Q 021459 86 RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSF-DESIRIWEVK 137 (312)
Q Consensus 86 ~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~~wd~~ 137 (312)
..-.++++......++.--...+.|.|.+|.+||+.|+.+-. .=.-++||-.
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 444556665433334332245578999999999998765533 2345788854
No 410
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.80 E-value=0.75 Score=36.70 Aligned_cols=183 Identities=13% Similarity=0.118 Sum_probs=108.4
Q ss_pred cceEEEEECCCCCEEEEEeCCC--eEEEEeCCCcceEEEeeeccCC-EEEEEEccCCCeEEEEcCCCeEEEEeCCCCcee
Q 021459 23 RAVSCVKFSNDGTLLASASLDK--TVIIWSASSLALVHRFVGHSEG-ISDLAWSSDSHYICSASDDRTLRIWDARTPFDC 99 (312)
Q Consensus 23 ~~v~~~~~s~~~~~l~t~~~d~--~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~ 99 (312)
.-...+.|..++.++-+.|.-| .|+.++..+++.+....-...- -..+....+.=+.+ .=.++...+||..+ .+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qL-TWk~~~~f~yd~~t-l~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQL-TWKEGTGFVYDPNT-LKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEE-ESSSSEEEEEETTT-TEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEE-EecCCeEEEEcccc-ceE
Confidence 3455788888888888887766 7888999998876554322111 12333333322223 34678899999886 355
Q ss_pred eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec--Cc---CeEEEEEccCCCEEEEeeCCCeEE
Q 021459 100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH--SM---PVTSVHFNRDGSLIVSGSHDGTCK 174 (312)
Q Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~---~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
+.++.- .+.-+.++ .|++.|+.+.....+.++|..+-+..+.++.. .. .++-+.+- +|...|-.=....|.
T Consensus 123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEE
Confidence 555532 23444555 45667777777778999998877666555432 22 34567775 677777666677888
Q ss_pred EEeCCCCceeeEcc-----c------C---CCCcEEEEEECCCCCEEEEEe
Q 021459 175 IWDAGEGACLKTLI-----D------D---KDPAVSFAKFSPNGKFILVGT 211 (312)
Q Consensus 175 iwd~~~~~~~~~~~-----~------~---~~~~~~~~~~~~~~~~l~~~~ 211 (312)
..|..+|+....+- . . ......-++++|..+.+.+.+
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 88999888765331 0 0 134577788988766555444
No 411
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.68 E-value=0.92 Score=36.82 Aligned_cols=234 Identities=14% Similarity=0.181 Sum_probs=127.0
Q ss_pred EEEEEEccCCCeEEEEcCCCeEEEEeCC------CCceeeeeeec-----ccccEEEEEEecCC------------CEEE
Q 021459 67 ISDLAWSSDSHYICSASDDRTLRIWDAR------TPFDCLKTLRG-----HSDFVFCVNFNPQS------------NLIV 123 (312)
Q Consensus 67 v~~~~~~~~~~~l~~~~~d~~v~~wd~~------~~~~~~~~~~~-----~~~~v~~~~~~~~~------------~~l~ 123 (312)
-+.|+++|.+.+-++....+...+||.. .+...+..+.. ......-+.|+... ..++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 3578999999888888788899999986 12222223221 11223344444321 2467
Q ss_pred EeecCCcEEEEEcCCCeE-----EEEee-ecCcCe-EEEEEccC--CCEEE-EeeCCCeEEEEeCCCCceee--EcccC-
Q 021459 124 SGSFDESIRIWEVKTGKC-----TRVIR-AHSMPV-TSVHFNRD--GSLIV-SGSHDGTCKIWDAGEGACLK--TLIDD- 190 (312)
Q Consensus 124 s~~~dg~i~~wd~~~~~~-----~~~~~-~~~~~v-~~~~~~~~--~~~l~-~~~~d~~i~iwd~~~~~~~~--~~~~~- 190 (312)
.+++||+|.-|...-+.. ...+. .....| +.+++... +.+|. +--..++|.+||-.=..... .+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 889999999998533322 11121 112233 45555432 34444 44467889999753221110 01000
Q ss_pred ---CCC-----------cEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEcc--CCceeEEEEE---EEccCCcE
Q 021459 191 ---KDP-----------AVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGH--TNKKYCITST---FSVTNGKY 251 (312)
Q Consensus 191 ---~~~-----------~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~ 251 (312)
... -++.+.-.+++..=+.|..-|.|.+||. .+..++.+... -...+-+... +-...+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 000 1222233333333334445578999997 46666655322 2223333321 11234678
Q ss_pred EEEeecCCeEEEEECCchheeecccCCc------cceEEEEEcCC------CceEEEeeecC
Q 021459 252 IVSGSEDNCVYVWDLQQKTMIQKLDGHT------DSVISVTCHPT------ENKIASAGLDG 301 (312)
Q Consensus 252 l~~~~~dg~i~iwd~~~~~~~~~~~~h~------~~v~~l~~~p~------~~~l~~~~~dg 301 (312)
|+---.||+|..||..+++.+..+.... ...+.|+|... ...+.+++-++
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~d 325 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPDD 325 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCCC
Confidence 8877789999999998887776665432 35788888642 33455565543
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.41 E-value=0.1 Score=28.54 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=26.3
Q ss_pred CeEEEEEccCC---CEEEEeeCCCeEEEEeCCCCc
Q 021459 151 PVTSVHFNRDG---SLIVSGSHDGTCKIWDAGEGA 182 (312)
Q Consensus 151 ~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~ 182 (312)
++.++.|+|+. .+|+-.-..+.+.++|++++.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f 36 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF 36 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence 58899999844 488888888999999998643
No 413
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.12 Score=43.82 Aligned_cols=117 Identities=17% Similarity=0.292 Sum_probs=77.9
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc----eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCC
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLA----LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTP 96 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~ 96 (312)
-+++|.+++||+|.+.||.-..+.+|.+.+....+ ...+-+..+..|..++|+.+ .-+|.....| +.+|.....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 45699999999999999999999999999874322 12222334556889999876 4455554444 567766554
Q ss_pred ceeeeeeecccccEEEEEEecCCCEEEEe-e-cCCcEEEEEcCCC
Q 021459 97 FDCLKTLRGHSDFVFCVNFNPQSNLIVSG-S-FDESIRIWEVKTG 139 (312)
Q Consensus 97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~-~dg~i~~wd~~~~ 139 (312)
...++..+.|.-.|.--.|-++.+.++-+ + ...++.=+.++++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 55566677777788888888887754332 3 3333333444443
No 414
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.32 E-value=1.2 Score=35.90 Aligned_cols=165 Identities=12% Similarity=0.191 Sum_probs=104.0
Q ss_pred ecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecC-cCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCc
Q 021459 104 RGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHS-MPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182 (312)
Q Consensus 104 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (312)
.+-...+.++.|+|+.+.|++......-.++=...|+.++.+.-.. ...-.+.+.-+++++++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 3445569999999999999888877776666667788777664221 223467777788888888888888887665432
Q ss_pred eeeEc---------ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCc-EE--EEEEccCCc--ee--EE-EEEEE
Q 021459 183 CLKTL---------IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGK-FL--KIYTGHTNK--KY--CI-TSTFS 245 (312)
Q Consensus 183 ~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~--~~~~~~~~~--~~--~~-~~~~~ 245 (312)
..... ..........++|+|....|..+-.-+-+.||...... .+ .....+... .. .+ ...+.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 21111 11113446678899999999888877777777665332 11 111111110 00 11 12234
Q ss_pred ccCCcEEEEeecCCeEEEEECCc
Q 021459 246 VTNGKYIVSGSEDNCVYVWDLQQ 268 (312)
Q Consensus 246 ~~~~~~l~~~~~dg~i~iwd~~~ 268 (312)
..++.+|+.+.+++.+.-.|...
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCC
Confidence 45677888888888888888754
No 415
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.25 E-value=0.058 Score=49.56 Aligned_cols=163 Identities=14% Similarity=0.286 Sum_probs=92.7
Q ss_pred ecccccceEEEEECC-CCCEEEEEeCCCeEEEEeCC--CcceEEEee-----eccCCEEEEEEcc---CCCeEEEEcCCC
Q 021459 18 LTAHSRAVSCVKFSN-DGTLLASASLDKTVIIWSAS--SLALVHRFV-----GHSEGISDLAWSS---DSHYICSASDDR 86 (312)
Q Consensus 18 ~~~h~~~v~~~~~s~-~~~~l~t~~~d~~i~vw~~~--~~~~~~~~~-----~~~~~v~~~~~~~---~~~~l~~~~~d~ 86 (312)
+.+..+.|-.+.|.. +-..++ ..-|.+.||++. .|+....+. .....+.-+.|.| +..++..+..++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 345566677777743 222222 223677888765 343332222 2233445566665 566788888888
Q ss_pred eEEEEeCCCCceeeeeeecccccEEE-----------EEEecCCCEEEEeecCCcEEEEEcC-----CCeEEEEeeecC-
Q 021459 87 TLRIWDARTPFDCLKTLRGHSDFVFC-----------VNFNPQSNLIVSGSFDESIRIWEVK-----TGKCTRVIRAHS- 149 (312)
Q Consensus 87 ~v~~wd~~~~~~~~~~~~~~~~~v~~-----------~~~~~~~~~l~s~~~dg~i~~wd~~-----~~~~~~~~~~~~- 149 (312)
.+++........ ..+.+|...+.. -..+|||+.++++..||.+++|.+. .-.|....+.|.
T Consensus 206 ~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 206 EIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred ceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 998887655322 333445443322 2378999999999999999988753 223444556665
Q ss_pred cCeEEEEEccCCC---------EEEEee-CCCeEEEEeCCCCcee
Q 021459 150 MPVTSVHFNRDGS---------LIVSGS-HDGTCKIWDAGEGACL 184 (312)
Q Consensus 150 ~~v~~~~~~~~~~---------~l~~~~-~d~~i~iwd~~~~~~~ 184 (312)
.+-.|.-++.+.. ++++++ .+..+++|.....+++
T Consensus 284 ~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 284 HPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3333333443322 334433 3456788876665554
No 416
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.21 E-value=1.1 Score=34.85 Aligned_cols=145 Identities=13% Similarity=0.135 Sum_probs=80.5
Q ss_pred cCeEEEEEccCCCEEEEeeCC---------CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEE-EEecCCeEEEE
Q 021459 150 MPVTSVHFNRDGSLIVSGSHD---------GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFIL-VGTLDSTLKLW 219 (312)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~v~ 219 (312)
...+.-..+|+|++++-...| |.++.|-... + +..+.. .-..-..++|+.+.+.+. +-+.+-+|.-|
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~-v~~i~~-~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-Q-VELIWN-CVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCC-C-ceeeeh-hccCCccccccccCcEEEEEccCceEEeee
Confidence 345666788999985433222 2333332211 1 111110 011122356776666544 44667778778
Q ss_pred E--cCCCcE-----EEEEEc-----cC-CceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEE
Q 021459 220 N--YSAGKF-----LKIYTG-----HT-NKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVT 286 (312)
Q Consensus 220 d--~~~~~~-----~~~~~~-----~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~ 286 (312)
| ..+|.. +..+.. +. ....++ ...|.+.++.-..|+|...|..+++.+.++.-....|++++
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I-----D~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI-----DTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceE-----ccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 7 444432 111111 00 011122 23577888888889999999999999988887788999999
Q ss_pred EcCC--CceEEEeeecCC
Q 021459 287 CHPT--ENKIASAGLDGD 302 (312)
Q Consensus 287 ~~p~--~~~l~~~~~dgd 302 (312)
|--. .-..+|+..+.+
T Consensus 261 FgGkn~d~~yvT~aa~~~ 278 (310)
T KOG4499|consen 261 FGGKNLDILYVTTAAKFD 278 (310)
T ss_pred ecCCCccEEEEEehhccc
Confidence 9543 234455544443
No 417
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=0.7 Score=44.03 Aligned_cols=112 Identities=13% Similarity=0.021 Sum_probs=65.7
Q ss_pred EEEEEEecCCCEEE--EeecCCcEEEEEcCCCeEE-----EEeeec------CcCeEEEEEccCCC-EEEEeeCCCeEEE
Q 021459 110 VFCVNFNPQSNLIV--SGSFDESIRIWEVKTGKCT-----RVIRAH------SMPVTSVHFNRDGS-LIVSGSHDGTCKI 175 (312)
Q Consensus 110 v~~~~~~~~~~~l~--s~~~dg~i~~wd~~~~~~~-----~~~~~~------~~~v~~~~~~~~~~-~l~~~~~d~~i~i 175 (312)
+..+...+|+...+ ..+.+-.|..||+++-... .-+..| ..-..++.|.|.-. ..+++..|+.|++
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 34444556655433 3333446889998753211 111111 12245677877432 3566778888887
Q ss_pred EeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcC
Q 021459 176 WDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYS 222 (312)
Q Consensus 176 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 222 (312)
.-+........- ........+++|+|.|+++++|-..|++..|...
T Consensus 183 ~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 183 KSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred hhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 755432111111 1223456788999999999999999999988653
No 418
>PRK10115 protease 2; Provisional
Probab=94.98 E-value=3.1 Score=38.80 Aligned_cols=110 Identities=14% Similarity=0.020 Sum_probs=64.5
Q ss_pred CEEEEEEccCCCeEEEEcCC-----CeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecC------CcEEEE
Q 021459 66 GISDLAWSSDSHYICSASDD-----RTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD------ESIRIW 134 (312)
Q Consensus 66 ~v~~~~~~~~~~~l~~~~~d-----~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------g~i~~w 134 (312)
.+..+.|+|++++|+.+.+. -.+++.|+.++......+.+- -..++|.+|++.|+....+ ..|+.+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 46678899999988865332 257788887653222222221 1458999998866555432 357778
Q ss_pred EcCCC--eEEEEeeecCcCeE-EEEEccCCCEEEEeeC---CCeEEEEeC
Q 021459 135 EVKTG--KCTRVIRAHSMPVT-SVHFNRDGSLIVSGSH---DGTCKIWDA 178 (312)
Q Consensus 135 d~~~~--~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---d~~i~iwd~ 178 (312)
++.++ +....+........ ....+.++++++..+. ++.+.+++.
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 88877 33334443333333 3333447776664433 346788874
No 419
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=94.86 E-value=3.6 Score=38.92 Aligned_cols=73 Identities=23% Similarity=0.299 Sum_probs=45.0
Q ss_pred ccceEEEEECCCC------CEEEEEeCCCeEEEEeC-CCcceEEEe-ee---ccCCEEEEEEccCCCeEEEEcCCCeEEE
Q 021459 22 SRAVSCVKFSNDG------TLLASASLDKTVIIWSA-SSLALVHRF-VG---HSEGISDLAWSSDSHYICSASDDRTLRI 90 (312)
Q Consensus 22 ~~~v~~~~~s~~~------~~l~t~~~d~~i~vw~~-~~~~~~~~~-~~---~~~~v~~~~~~~~~~~l~~~~~d~~v~~ 90 (312)
+..|.|+.++|-| ++++.|..+..+++-.. .+...+... .+ -+..|.-..+-.|..+|.++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 5689999999742 26888877766654432 233222211 11 1233444455567889999999999887
Q ss_pred EeCC
Q 021459 91 WDAR 94 (312)
Q Consensus 91 wd~~ 94 (312)
+.+.
T Consensus 610 fv~d 613 (1096)
T KOG1897|consen 610 FVLD 613 (1096)
T ss_pred EEEE
Confidence 7543
No 420
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.79 E-value=0.18 Score=27.61 Aligned_cols=32 Identities=19% Similarity=0.486 Sum_probs=25.7
Q ss_pred ccEEEEEEecCC---CEEEEeecCCcEEEEEcCCC
Q 021459 108 DFVFCVNFNPQS---NLIVSGSFDESIRIWEVKTG 139 (312)
Q Consensus 108 ~~v~~~~~~~~~---~~l~s~~~dg~i~~wd~~~~ 139 (312)
+.+.++.|+|++ .+|+.+-..|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 357899999854 47888777899999999963
No 421
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.78 E-value=2.1 Score=39.92 Aligned_cols=72 Identities=10% Similarity=0.182 Sum_probs=42.6
Q ss_pred CCEEEEEEccCCCeEEEEcCCCeEEEEeCCC----------Cce--eeeee--------ecccccEEEEEEecC---CCE
Q 021459 65 EGISDLAWSSDSHYICSASDDRTLRIWDART----------PFD--CLKTL--------RGHSDFVFCVNFNPQ---SNL 121 (312)
Q Consensus 65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~----------~~~--~~~~~--------~~~~~~v~~~~~~~~---~~~ 121 (312)
..|..+..+|+|++|+..+..+.. |..+.. +.. ..++. ..+...|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 358889999999999988776643 333311 000 00111 122345667777775 356
Q ss_pred EEEeecCCcEEEEEcC
Q 021459 122 IVSGSFDESIRIWEVK 137 (312)
Q Consensus 122 l~s~~~dg~i~~wd~~ 137 (312)
|+.-..|+++++||+.
T Consensus 164 l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDIS 179 (717)
T ss_pred EEEEecCCEEEEEecC
Confidence 6666677777777764
No 422
>PLN02193 nitrile-specifier protein
Probab=94.65 E-value=3 Score=37.00 Aligned_cols=147 Identities=14% Similarity=0.188 Sum_probs=74.1
Q ss_pred CCCEEEEeecC-----CcEEEEEcCCCeEEEEeeec--CcC--eEEEEEccCCCEEEEeeCCC-----eEEEEeCCCCce
Q 021459 118 QSNLIVSGSFD-----ESIRIWEVKTGKCTRVIRAH--SMP--VTSVHFNRDGSLIVSGSHDG-----TCKIWDAGEGAC 183 (312)
Q Consensus 118 ~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~--~~~--v~~~~~~~~~~~l~~~~~d~-----~i~iwd~~~~~~ 183 (312)
++.+++.|+.+ ..+..||+.+.+-....... ..+ -.+++. -++++++.|+.++ .+..||+.+.+.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45566777655 35788898876543221110 111 112222 2566677776543 466788776654
Q ss_pred eeEccc----CCCCcEEEEEECCCCCEEEEEecC----CeEEEEEcCCCcEEEEEEcc--CCceeEEEEEEEccCCcEEE
Q 021459 184 LKTLID----DKDPAVSFAKFSPNGKFILVGTLD----STLKLWNYSAGKFLKIYTGH--TNKKYCITSTFSVTNGKYIV 253 (312)
Q Consensus 184 ~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d----~~i~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~ 253 (312)
...... ........+. .+++.++.++.+ ..+.+||..+.+....-... +.......+. .-++++++
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~--~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~--~~~~~iyv 382 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEV--VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASA--AVGKHIVI 382 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEE--ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEE--EECCEEEE
Confidence 321110 0001111222 256677777655 46889999887764432210 1111111111 23567778
Q ss_pred EeecC--------------CeEEEEECCch
Q 021459 254 SGSED--------------NCVYVWDLQQK 269 (312)
Q Consensus 254 ~~~~d--------------g~i~iwd~~~~ 269 (312)
.|+.+ ..+.++|+.+.
T Consensus 383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~ 412 (470)
T PLN02193 383 FGGEIAMDPLAHVGPGQLTDGTFALDTETL 412 (470)
T ss_pred ECCccCCccccccCccceeccEEEEEcCcC
Confidence 88753 24778888654
No 423
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.63 E-value=0.62 Score=36.40 Aligned_cols=72 Identities=14% Similarity=0.372 Sum_probs=51.9
Q ss_pred EccCCCEEEEeeCCCeEEEEeCCCCceeeEc------cc-------CCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459 157 FNRDGSLIVSGSHDGTCKIWDAGEGACLKTL------ID-------DKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223 (312)
Q Consensus 157 ~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 223 (312)
+..++.++++.+.+|.+++||+.+.+..... .. .....+..+.++.+|.-+++-+ +|..+.||..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4457889999999999999999987654322 22 2345567777888887766554 67889998776
Q ss_pred CcEEEE
Q 021459 224 GKFLKI 229 (312)
Q Consensus 224 ~~~~~~ 229 (312)
+..+++
T Consensus 97 ~~W~~v 102 (219)
T PF07569_consen 97 GCWIRV 102 (219)
T ss_pred ceeEEe
Confidence 665554
No 424
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.62 E-value=1.1 Score=39.02 Aligned_cols=143 Identities=12% Similarity=0.155 Sum_probs=84.5
Q ss_pred CCCEEEE-EeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCC-------eEEEEcCCCeEEEEeCCCCceeeeeee
Q 021459 33 DGTLLAS-ASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSH-------YICSASDDRTLRIWDARTPFDCLKTLR 104 (312)
Q Consensus 33 ~~~~l~t-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~d~~v~~wd~~~~~~~~~~~~ 104 (312)
+..+|.. |+.-..+.--|++-|+.+..+..|..- -+.|.|+.+ .-+.|-.+..|.--|.+.....+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 4444443 444456666688888888888877665 366766432 223455566665556543221111111
Q ss_pred cccccE----EEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCC
Q 021459 105 GHSDFV----FCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAG 179 (312)
Q Consensus 105 ~~~~~v----~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (312)
..+.+ ++......+.+++.++..|-|++||.-..+....+.+-..+|..+..+.+|+++++.+.. .+.+-|++
T Consensus 556 -sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 556 -SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred -ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 11111 111122345689999999999999964333334455566788889999999987766554 66666654
No 425
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=2.2 Score=37.42 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=17.5
Q ss_pred EEEEEEecCCCEEEEeecCCcEEE
Q 021459 110 VFCVNFNPQSNLIVSGSFDESIRI 133 (312)
Q Consensus 110 v~~~~~~~~~~~l~s~~~dg~i~~ 133 (312)
|..+..++.|..++-++.+|.+..
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vM 129 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVM 129 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEE
Confidence 556677888888888888885543
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=1.8 Score=39.47 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=35.3
Q ss_pred cEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459 130 SIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE 180 (312)
Q Consensus 130 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 180 (312)
.|++|++. |+.+..+......+-.+.|+.+. .|++...+|++.+|++-.
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence 47777754 55555554444477889998665 577788999999998753
No 427
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.47 E-value=2 Score=39.10 Aligned_cols=111 Identities=15% Similarity=0.245 Sum_probs=69.9
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEee-eccCCEEEEEEc--cCCCeEEEEcCCCeEEEEeCC-----C
Q 021459 24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFV-GHSEGISDLAWS--SDSHYICSASDDRTLRIWDAR-----T 95 (312)
Q Consensus 24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~d~~v~~wd~~-----~ 95 (312)
..+-+.-|.-++..+.-+....+.|||...+.+...-. ...+.|.++.|. |+++.+++.+....|.+|.-. +
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 44445555544444444445678999998876543322 346789999996 578888888889999988431 1
Q ss_pred --C-ceeeee--eeccc-ccEEEEEEecCCCEEEEeecCCcEEEEEc
Q 021459 96 --P-FDCLKT--LRGHS-DFVFCVNFNPQSNLIVSGSFDESIRIWEV 136 (312)
Q Consensus 96 --~-~~~~~~--~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~~wd~ 136 (312)
+ ...++. +..++ .+|.+..|.++|..++.++ ..+.++|-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 0 111222 22233 5688899999987766554 45777764
No 428
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.35 E-value=2.9 Score=35.65 Aligned_cols=141 Identities=9% Similarity=0.080 Sum_probs=70.2
Q ss_pred CEEEEEEccCCCeEEEEc-----------CCC-eEEEEeCCCCc---eeeeeeecccccEEEEEEecCCCEEEEeecCCc
Q 021459 66 GISDLAWSSDSHYICSAS-----------DDR-TLRIWDARTPF---DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDES 130 (312)
Q Consensus 66 ~v~~~~~~~~~~~l~~~~-----------~d~-~v~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~ 130 (312)
....|+|.++|+++++-. ..+ .|.+++-.+.. .....+.........+++.+++ ++++ ... .
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~-~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP-D 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC-e
Confidence 345788999988776642 122 56666532211 1112222222334678888887 4444 433 3
Q ss_pred EEEE-EcCCC-----eEEEE---eee----cCcCeEEEEEccCCCEEEEeeCC-------------------CeEEEEeC
Q 021459 131 IRIW-EVKTG-----KCTRV---IRA----HSMPVTSVHFNRDGSLIVSGSHD-------------------GTCKIWDA 178 (312)
Q Consensus 131 i~~w-d~~~~-----~~~~~---~~~----~~~~v~~~~~~~~~~~l~~~~~d-------------------~~i~iwd~ 178 (312)
|..+ |.... +.... +.. +......+.|.|||.+.++-+.. +.+.-++.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 4434 44321 21111 211 12336789999999876654421 33444444
Q ss_pred CCCceeeEcccCCCCcEEEEEECCCCCEEEEEe
Q 021459 179 GEGACLKTLIDDKDPAVSFAKFSPNGKFILVGT 211 (312)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
..+.. ..+ ...-.....++|+++|+++++-.
T Consensus 172 dg~~~-e~~-a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKL-RVV-AHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeE-EEE-ecCcCCCccceECCCCCEEEEcc
Confidence 43322 111 11112223467899988876644
No 429
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=94.24 E-value=2.3 Score=34.05 Aligned_cols=240 Identities=13% Similarity=0.083 Sum_probs=134.5
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeee-
Q 021459 24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKT- 102 (312)
Q Consensus 24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~- 102 (312)
.-..++-+|||..-+++...+.|--.|..+++....-.+....-..+...|||..-++-+.. .|.-.|.++..-....
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 44567778888877788777777777888887655444444555667788888765543222 3444454432111111
Q ss_pred -eecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec-CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459 103 -LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH-SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGE 180 (312)
Q Consensus 103 -~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 180 (312)
.+..........|.+.|++-+++... .---.|..++ .++++... ...-+.++..|+|+..++.-.++.|...|...
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccc-cceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 12234567788899999888877532 1111121111 12233221 23456788899999988888888888888776
Q ss_pred CceeeEcccCC-CCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEE-EEccCCceeEEEEEEEccCCcEEEEeecC
Q 021459 181 GACLKTLIDDK-DPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKI-YTGHTNKKYCITSTFSVTNGKYIVSGSED 258 (312)
Q Consensus 181 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 258 (312)
+........+. ......+.-+|.|..-++....+.+..||........- +.+.....+.+. ....++.-.+-...
T Consensus 220 ~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~r---VD~~grVW~sea~a 296 (353)
T COG4257 220 GHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMR---VDRHGRVWLSEADA 296 (353)
T ss_pred CCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceee---eccCCcEEeecccc
Confidence 63222111111 12233344567777777766677888888765543321 222222222222 22334444544556
Q ss_pred CeEEEEECCch
Q 021459 259 NCVYVWDLQQK 269 (312)
Q Consensus 259 g~i~iwd~~~~ 269 (312)
|.|.-+|.++.
T Consensus 297 gai~rfdpeta 307 (353)
T COG4257 297 GAIGRFDPETA 307 (353)
T ss_pred CceeecCcccc
Confidence 66777776553
No 430
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=94.03 E-value=3.1 Score=34.74 Aligned_cols=140 Identities=11% Similarity=0.145 Sum_probs=65.3
Q ss_pred CCCEEEEeecC-----CcEEEEEcCCCeEE---EEeeecCcCe--EEEEEccCCCEEEEeeC-----CCeEEEEeCCCCc
Q 021459 118 QSNLIVSGSFD-----ESIRIWEVKTGKCT---RVIRAHSMPV--TSVHFNRDGSLIVSGSH-----DGTCKIWDAGEGA 182 (312)
Q Consensus 118 ~~~~l~s~~~d-----g~i~~wd~~~~~~~---~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~ 182 (312)
++.+++.|+.+ ..+..||+.+.+-. ..+..-..+. .+++. -++++.+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45566666654 24667777665431 1111111111 12222 25666666664 2357888988765
Q ss_pred eeeEcccCCCCcEEEEEECCCCCEEEEEecCC----eEEEEEcCCCcEEEEEEcc--CCcee-EEEEEEEccCCcEEEEe
Q 021459 183 CLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS----TLKLWNYSAGKFLKIYTGH--TNKKY-CITSTFSVTNGKYIVSG 255 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~l~~~ 255 (312)
....................++++.+.|+.++ .+..||..+.+....-... ..+.. .........++++++.|
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~G 230 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIG 230 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEEC
Confidence 43321001111111122234567777777653 3567888776654321100 00110 01111222356788888
Q ss_pred ecC
Q 021459 256 SED 258 (312)
Q Consensus 256 ~~d 258 (312)
+.+
T Consensus 231 G~~ 233 (323)
T TIGR03548 231 GFN 233 (323)
T ss_pred CcC
Confidence 865
No 431
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.03 E-value=3.6 Score=35.45 Aligned_cols=192 Identities=13% Similarity=0.167 Sum_probs=86.2
Q ss_pred CCEEEEee-cCCcEEEEEcCC----CeEEEEeee---cC----cCeEEEEEccCCCEEEEeeC------CCeEEEEeCCC
Q 021459 119 SNLIVSGS-FDESIRIWEVKT----GKCTRVIRA---HS----MPVTSVHFNRDGSLIVSGSH------DGTCKIWDAGE 180 (312)
Q Consensus 119 ~~~l~s~~-~dg~i~~wd~~~----~~~~~~~~~---~~----~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~ 180 (312)
.++|+..+ ..+.|++.|+.+ .+..++++. +. .....+..-|+|+.++++-. -|.+.+.|-.+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 45666666 567899999874 334444432 11 11234455688988887432 24577777665
Q ss_pred CceeeEcccCCC--CcEEEEEECCCCCEEEEEe--------------------cCCeEEEEEcCCCcEEEEEEccCCcee
Q 021459 181 GACLKTLIDDKD--PAVSFAKFSPNGKFILVGT--------------------LDSTLKLWNYSAGKFLKIYTGHTNKKY 238 (312)
Q Consensus 181 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~--------------------~d~~i~v~d~~~~~~~~~~~~~~~~~~ 238 (312)
-+.......... .-.....+.|..+.+++.. .-.++.+||+.+.+.++.+.-......
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 554444332211 1122345667666666642 235799999999998888775544444
Q ss_pred EEEEEEEcc-CC-cEEEEeecCCeEEEEEC-Cch----heeeccc-----------------CCccceEEEEEcCCCceE
Q 021459 239 CITSTFSVT-NG-KYIVSGSEDNCVYVWDL-QQK----TMIQKLD-----------------GHTDSVISVTCHPTENKI 294 (312)
Q Consensus 239 ~~~~~~~~~-~~-~~l~~~~~dg~i~iwd~-~~~----~~~~~~~-----------------~h~~~v~~l~~~p~~~~l 294 (312)
.+...+... +. .-++.+.-...|..|-- ..+ +.+..+. .-..-|+.+..|.|.++|
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL 326 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL 326 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence 444444432 12 22333333344444422 111 1111121 112347888899999888
Q ss_pred EEeeecCCeeEEEEeec
Q 021459 295 ASAGLDGDRTVRVWVQD 311 (312)
Q Consensus 295 ~~~~~dgd~~v~iw~~~ 311 (312)
..+.. ..+.||.||+.
T Consensus 327 Yvs~W-~~GdvrqYDIS 342 (461)
T PF05694_consen 327 YVSNW-LHGDVRQYDIS 342 (461)
T ss_dssp EEEET-TTTEEEEEE-S
T ss_pred EEEcc-cCCcEEEEecC
Confidence 76665 45789999874
No 432
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.02 E-value=2.9 Score=34.42 Aligned_cols=271 Identities=9% Similarity=0.092 Sum_probs=111.8
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeec-----cCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGH-----SEGISDLAWSSDSHYICSASDDRTLRIWDART 95 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~ 95 (312)
-..++..+.|..+.+-.+.| ..+.|.. ....++-....... .....++.|..+ ..+++| ..+.|. ...+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG-~~g~il~-T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g~ll-~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVG-AYGTILK-TTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPGLLL-HTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEE-TTTEEEE-ESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETTEEE-EESST
T ss_pred CCCceEEEEEecCCEEEEEe-cCCEEEE-ECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCceEE-EecCC
Confidence 45588999998555555555 4454422 22223221111111 123556777543 344444 455432 22222
Q ss_pred Cc--eeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE-eeecCcCeEEEEEccCCCEEEEeeCCCe
Q 021459 96 PF--DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV-IRAHSMPVTSVHFNRDGSLIVSGSHDGT 172 (312)
Q Consensus 96 ~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
+. +.+.....-.+....+....++..++. +..|.|+. ....|+.-+. .......+..+.-+++|++++++.....
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~-~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDGSAELA-GDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETTEEEEE-ETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCCcEEEE-cCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 21 111110111122223333333333333 44455432 2233333222 2233456788888999999888877767
Q ss_pred EEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEc----cCCcee-EEEEEEEcc
Q 021459 173 CKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTG----HTNKKY-CITSTFSVT 247 (312)
Q Consensus 173 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~----~~~~~~-~~~~~~~~~ 247 (312)
..-||.......... ......+..+.|.|++.+.+++ ..|.|+.=+. ......+.. .....+ .+...+ .+
T Consensus 168 ~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~--~~~~~~w~~~~~~~~~~~~~~ld~a~-~~ 242 (302)
T PF14870_consen 168 YSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD--PDDGETWSEPIIPIKTNGYGILDLAY-RP 242 (302)
T ss_dssp EEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE---TTEEEEE---B-TTSS--S-EEEEEE-SS
T ss_pred EEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEccC--CCCccccccccCCcccCceeeEEEEe-cC
Confidence 778887653222211 1234568888899998766644 7788877652 122222222 111122 233333 34
Q ss_pred CCcEEEEeecCCeEEEEECCc---hheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEE
Q 021459 248 NGKYIVSGSEDNCVYVWDLQQ---KTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVW 308 (312)
Q Consensus 248 ~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw 308 (312)
+.+..++| ..|.+.. .... .+.......-......+.|.+..+-++.+. ++.|.=|
T Consensus 243 ~~~~wa~g-g~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~---~G~ll~~ 301 (302)
T PF14870_consen 243 PNEIWAVG-GSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ---DGVLLRY 301 (302)
T ss_dssp SS-EEEEE-STT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S---TTEEEEE
T ss_pred CCCEEEEe-CCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEECC---CcEEEEe
Confidence 45555554 4454433 2222 222223333455688898876666666553 3455444
No 433
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=93.67 E-value=2.7 Score=33.40 Aligned_cols=143 Identities=13% Similarity=0.218 Sum_probs=73.6
Q ss_pred EEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCC---CeEEEEeCCC----CceeeEcc-cCCCCcEEEEEECCC
Q 021459 132 RIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHD---GTCKIWDAGE----GACLKTLI-DDKDPAVSFAKFSPN 203 (312)
Q Consensus 132 ~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~iwd~~~----~~~~~~~~-~~~~~~~~~~~~~~~ 203 (312)
.+||+.+++..........-..+-.+.+||+++.+|+.. ..+++++... ........ -...........-||
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 478888776433211122223344567899999988753 3477777543 11110000 011122223445679
Q ss_pred CCEEEEEecCCe-EEEEEcCC--CcEEE--EEEc--cCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc
Q 021459 204 GKFILVGTLDST-LKLWNYSA--GKFLK--IYTG--HTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD 276 (312)
Q Consensus 204 ~~~l~~~~~d~~-i~v~d~~~--~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 276 (312)
|+.|+.|+.... ..+|.-.. ..... .+.. .......--..+..++|++++.+..+. .|||..+.+.+..+.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTLP 206 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeCC
Confidence 999999887743 34444321 11111 1110 011111222345668999999888765 466877665555544
No 434
>PLN02153 epithiospecifier protein
Probab=93.56 E-value=4 Score=34.42 Aligned_cols=147 Identities=17% Similarity=0.251 Sum_probs=71.2
Q ss_pred CCCEEEEeecC-----CcEEEEEcCCCeEEEEeee--c--CcC--eEEEEEccCCCEEEEeeCC-----------CeEEE
Q 021459 118 QSNLIVSGSFD-----ESIRIWEVKTGKCTRVIRA--H--SMP--VTSVHFNRDGSLIVSGSHD-----------GTCKI 175 (312)
Q Consensus 118 ~~~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~--~--~~~--v~~~~~~~~~~~l~~~~~d-----------~~i~i 175 (312)
++++++.|+.+ ..+.+||+.+.+-...-.. . ..+ -.+++ .-++++++.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEE-EECCEEEEECCccCCCccCCCcccceEEE
Confidence 35566777653 2577889887653321110 0 111 11222 2356666777653 24677
Q ss_pred EeCCCCceeeEcccC----CCCcEEEEEECCCCCEEEEEecC-------------CeEEEEEcCCCcEEEEEEcc--CCc
Q 021459 176 WDAGEGACLKTLIDD----KDPAVSFAKFSPNGKFILVGTLD-------------STLKLWNYSAGKFLKIYTGH--TNK 236 (312)
Q Consensus 176 wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d-------------~~i~v~d~~~~~~~~~~~~~--~~~ 236 (312)
||+.+.+........ .......+. -+++.++.++.+ ..+.+||..+.+....-... ...
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~ 241 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAV--VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA 241 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEE--ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence 888776543211100 011111222 255665655432 46888998887765432111 111
Q ss_pred eeEEEEEEEccCCcEEEEeecC--------------CeEEEEECCch
Q 021459 237 KYCITSTFSVTNGKYIVSGSED--------------NCVYVWDLQQK 269 (312)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~ 269 (312)
....... ..++++++.|+.. ..+..+|+.+.
T Consensus 242 r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 242 RSVFAHA--VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred cceeeeE--EECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 1111111 2346777777752 25778887654
No 435
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=2.7 Score=40.97 Aligned_cols=139 Identities=14% Similarity=0.313 Sum_probs=88.4
Q ss_pred eCCCeEEEEeCCCcceEEEeeeccCCEEEEE--------EccCCCeEEEEcCCCeEEEEeCCC----Cceee----eeee
Q 021459 41 SLDKTVIIWSASSLALVHRFVGHSEGISDLA--------WSSDSHYICSASDDRTLRIWDART----PFDCL----KTLR 104 (312)
Q Consensus 41 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~d~~v~~wd~~~----~~~~~----~~~~ 104 (312)
..|..+.+|+++++.....+.+-...|..+. |-|.=++++..+..-.|.++-+.. ..... ..+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 4678999999999877777777777776664 334445566555666677764421 11100 1111
Q ss_pred cccccEEEEEEecCCCEEEEeecCCcEE--EEEcCCC---e-EE----------------EEee-ecCcCeEEEEEccCC
Q 021459 105 GHSDFVFCVNFNPQSNLIVSGSFDESIR--IWEVKTG---K-CT----------------RVIR-AHSMPVTSVHFNRDG 161 (312)
Q Consensus 105 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~--~wd~~~~---~-~~----------------~~~~-~~~~~v~~~~~~~~~ 161 (312)
...-.|.|+....+|+.+++| .||.|+ +|....+ + +. ..+. .+..+|..+.....-
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 234568888877788777765 455443 2222221 1 10 1122 456789999998888
Q ss_pred CEEEEeeCCCeEEEEeCCC
Q 021459 162 SLIVSGSHDGTCKIWDAGE 180 (312)
Q Consensus 162 ~~l~~~~~d~~i~iwd~~~ 180 (312)
..+.+-+..+.|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8899999999999999876
No 436
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.45 E-value=0.083 Score=48.60 Aligned_cols=117 Identities=15% Similarity=0.264 Sum_probs=70.5
Q ss_pred eEEEEECC---CCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEE-----------EccCCCeEEEEcCCCeEEE
Q 021459 25 VSCVKFSN---DGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLA-----------WSSDSHYICSASDDRTLRI 90 (312)
Q Consensus 25 v~~~~~s~---~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~d~~v~~ 90 (312)
+.-+.|.| +..++..+-.++++++.+...... ..+.+|...+..++ .+|||+.++.++.||.++.
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 34455554 566777788889999876654332 33445766655543 5899999999999999999
Q ss_pred EeCCC----Cceeeeeeeccc-ccEEEEEEecCC---------CEEEEee-cCCcEEEEEcCCCeEE
Q 021459 91 WDART----PFDCLKTLRGHS-DFVFCVNFNPQS---------NLIVSGS-FDESIRIWEVKTGKCT 142 (312)
Q Consensus 91 wd~~~----~~~~~~~~~~~~-~~v~~~~~~~~~---------~~l~s~~-~dg~i~~wd~~~~~~~ 142 (312)
|.+.- ...++...+.|+ .+-.|.-++.+. .++++++ .+..+++|....-+|+
T Consensus 262 ~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 262 YQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 97632 123444555565 333333343321 2344443 3456888876655544
No 437
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.30 E-value=4.5 Score=34.18 Aligned_cols=53 Identities=13% Similarity=0.280 Sum_probs=25.9
Q ss_pred CCCEEEEeecC-----------CcEEEEEcCCCeEEEEeeecCcCeEEE-EE-ccCCCEEEEeeCC
Q 021459 118 QSNLIVSGSFD-----------ESIRIWEVKTGKCTRVIRAHSMPVTSV-HF-NRDGSLIVSGSHD 170 (312)
Q Consensus 118 ~~~~l~s~~~d-----------g~i~~wd~~~~~~~~~~~~~~~~v~~~-~~-~~~~~~l~~~~~d 170 (312)
++++.+.|+.+ ..+..||..+++-...-.......... +. .-++++.+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 45666666653 246778887665332211111111111 11 2367777777754
No 438
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.17 E-value=3.8 Score=35.91 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=73.0
Q ss_pred EeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCC-------EEEEEecCCeEEEEEcC-CCcEEEEEEccC-Cc
Q 021459 166 SGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGK-------FILVGTLDSTLKLWNYS-AGKFLKIYTGHT-NK 236 (312)
Q Consensus 166 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~v~d~~-~~~~~~~~~~~~-~~ 236 (312)
.|+....+.-.|+..|+.+.......+- .+.+.|..+ .-++|-.+..|.-.|.+ .+..+...+... ..
T Consensus 485 dg~~~~kLykmDIErGkvveeW~~~ddv---vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~t 561 (776)
T COG5167 485 DGGERDKLYKMDIERGKVVEEWDLKDDV---VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKT 561 (776)
T ss_pred cCCCcccceeeecccceeeeEeecCCcc---eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhccc
Confidence 4555556666677777766554333222 234444321 22345455556555654 233333322111 01
Q ss_pred eeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEee
Q 021459 237 KYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAG 298 (312)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~ 298 (312)
.+...+... ....++|.|+..|-|++||--...--..+++....|..+....+|.++++..
T Consensus 562 Kn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 562 KNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred ccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee
Confidence 111111112 3356899999999999999654443445677788999999999998877654
No 439
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.95 E-value=1.1 Score=35.11 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=38.8
Q ss_pred EccCCCeEEEEcCCCeEEEEeCCCCceeeee------ee-------cccccEEEEEEecCCCEEEEeecCCcEEEEEcC
Q 021459 72 WSSDSHYICSASDDRTLRIWDARTPFDCLKT------LR-------GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVK 137 (312)
Q Consensus 72 ~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~ 137 (312)
+..++++|++...+|.+++||+.+....... +. .....|..+.+..+|.-+++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4457888999999999999999874322111 11 1234455555555555544433 3455666544
No 440
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.86 E-value=2.2 Score=39.26 Aligned_cols=113 Identities=12% Similarity=0.175 Sum_probs=74.0
Q ss_pred cceEEEEECC--CCCEEEEEeCCCeEEEEeCCCc-----------c---------eEEEeeeccCCEEEEEEc--cCCCe
Q 021459 23 RAVSCVKFSN--DGTLLASASLDKTVIIWSASSL-----------A---------LVHRFVGHSEGISDLAWS--SDSHY 78 (312)
Q Consensus 23 ~~v~~~~~s~--~~~~l~t~~~d~~i~vw~~~~~-----------~---------~~~~~~~~~~~v~~~~~~--~~~~~ 78 (312)
..|+.+.... +...|+.+..||.|.+|..+.. . +... ..-...+++++++ ...++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcceE
Confidence 4566666654 4457888999999999965321 0 0111 1123578889998 77788
Q ss_pred EEEEcCCCeEEEEeCCC--CceeeeeeecccccEEEEEEecCC---C---EEEEeecCCcEEEEEc
Q 021459 79 ICSASDDRTLRIWDART--PFDCLKTLRGHSDFVFCVNFNPQS---N---LIVSGSFDESIRIWEV 136 (312)
Q Consensus 79 l~~~~~d~~v~~wd~~~--~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~s~~~dg~i~~wd~ 136 (312)
||+++....|.||-... ..........+...|.+++|-++. . .+++++..|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888875332 111111111255678999997643 2 7888999999988877
No 441
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.50 E-value=2.7 Score=29.66 Aligned_cols=87 Identities=9% Similarity=0.116 Sum_probs=49.5
Q ss_pred EEECCCCCEEEEEecCCeEEEEEcCCCc--------EEEEEEccCCceeEEEEEEEc--cCCcEEEEeecCCeEEEEECC
Q 021459 198 AKFSPNGKFILVGTLDSTLKLWNYSAGK--------FLKIYTGHTNKKYCITSTFSV--TNGKYIVSGSEDNCVYVWDLQ 267 (312)
Q Consensus 198 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~ 267 (312)
-.|+.....|++++.-|.|.|++..... .+..+.-. ....++...... .+.+.|+.|+.. .+..||..
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin-~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNIN-QEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECC-CceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcc
Confidence 3456666678888888888888765322 23333322 223334333322 234567777655 58899997
Q ss_pred chheeecccCCccceEEEEE
Q 021459 268 QKTMIQKLDGHTDSVISVTC 287 (312)
Q Consensus 268 ~~~~~~~~~~h~~~v~~l~~ 287 (312)
+...+.. +.-.+.|+++.+
T Consensus 82 ~N~d~Fy-ke~~DGvn~i~~ 100 (136)
T PF14781_consen 82 NNSDLFY-KEVPDGVNAIVI 100 (136)
T ss_pred cCchhhh-hhCccceeEEEE
Confidence 6544322 223466777776
No 442
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.71 E-value=5.7 Score=31.59 Aligned_cols=138 Identities=16% Similarity=0.259 Sum_probs=71.9
Q ss_pred EEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCC---CeEEEEeCCC-Ccee--e---eeeecccccEEEEEEec
Q 021459 47 IIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDD---RTLRIWDART-PFDC--L---KTLRGHSDFVFCVNFNP 117 (312)
Q Consensus 47 ~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~v~~wd~~~-~~~~--~---~~~~~~~~~v~~~~~~~ 117 (312)
.+||..+.+....-....--..+=.+.+||++|.+|+.. ..+++++... ...+ . ..+ .......+..--|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m-~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM-QSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc-cCCCccccceECC
Confidence 467877765432111111111223467899999988652 3578887543 0000 0 011 1123334455567
Q ss_pred CCCEEEEeecCC-cEEEEEcCCC--eEEE--Eeee----c-CcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEc
Q 021459 118 QSNLIVSGSFDE-SIRIWEVKTG--KCTR--VIRA----H-SMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL 187 (312)
Q Consensus 118 ~~~~l~s~~~dg-~i~~wd~~~~--~~~~--~~~~----~-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (312)
||+.++.|+... +..+|.-+.. .... .+.. . ..----+...|+|++|+.+..+. .+||..+++.++.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 999988888764 3445543211 1111 1110 0 01112456779999998887754 56787777655554
No 443
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.26 E-value=9.2 Score=33.16 Aligned_cols=153 Identities=10% Similarity=0.126 Sum_probs=86.7
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEeCCCcc---eEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCce---e
Q 021459 26 SCVKFSNDGTLLASASLDKTVIIWSASSLA---LVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFD---C 99 (312)
Q Consensus 26 ~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~---~ 99 (312)
+.+-|...++.|+.... |-+.-|...... ++..-....++|.++.|++|.+.||.--.++.|.+.+...... .
T Consensus 26 ngvFfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 34555544444444333 344445443221 1221223456899999999999999999999999998632211 1
Q ss_pred eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCC-eEEEEeeecCcCeEEEEEccCCCEEEEeeC--CCeEEEE
Q 021459 100 LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTG-KCTRVIRAHSMPVTSVHFNRDGSLIVSGSH--DGTCKIW 176 (312)
Q Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iw 176 (312)
....+.....|....|... ..++.....| +.+|..... +.++..+.|+..|.-..|.++.+.++.++. .+.+.=+
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf 182 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPF 182 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccE
Confidence 1112223345777778765 4444444444 677765433 234455667778888888888776554433 3333334
Q ss_pred eCCCC
Q 021459 177 DAGEG 181 (312)
Q Consensus 177 d~~~~ 181 (312)
.++++
T Consensus 183 ~~~~~ 187 (657)
T KOG2377|consen 183 HFRAG 187 (657)
T ss_pred EEeec
Confidence 44433
No 444
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.15 E-value=7.4 Score=31.87 Aligned_cols=210 Identities=12% Similarity=0.125 Sum_probs=110.0
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEeCC------Cc-ceEEEeee-----ccCCEEEEEEccCCC------------eEEEE
Q 021459 27 CVKFSNDGTLLASASLDKTVIIWSAS------SL-ALVHRFVG-----HSEGISDLAWSSDSH------------YICSA 82 (312)
Q Consensus 27 ~~~~s~~~~~l~t~~~d~~i~vw~~~------~~-~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~~~ 82 (312)
.++++|.+.+-++....+...+|+.. .. .++-.+.. .....+.+.|+.... .++.+
T Consensus 27 Gia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~ 106 (336)
T TIGR03118 27 GLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFV 106 (336)
T ss_pred eeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEE
Confidence 68999999888887777899999876 11 22222221 123466677764322 25677
Q ss_pred cCCCeEEEEeCCCCce----eeeeee-ccccc-EEEEEEe--cCCCEEEEee-cCCcEEEEEcCCCeEEE--Eeeec---
Q 021459 83 SDDRTLRIWDARTPFD----CLKTLR-GHSDF-VFCVNFN--PQSNLIVSGS-FDESIRIWEVKTGKCTR--VIRAH--- 148 (312)
Q Consensus 83 ~~d~~v~~wd~~~~~~----~~~~~~-~~~~~-v~~~~~~--~~~~~l~s~~-~dg~i~~wd~~~~~~~~--~~~~~--- 148 (312)
++||+|.-|...-... ....+. ...+. ..-+++. ..+++|+.+. .+++|.+||-.=.+... .+...
T Consensus 107 tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iP 186 (336)
T TIGR03118 107 TEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALP 186 (336)
T ss_pred eCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCC
Confidence 8999999998532211 111111 11122 2334443 3355665554 46889999854222110 01000
Q ss_pred --CcC--e---------EEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCC-CcEEEEE-----EC-CCCCEEE
Q 021459 149 --SMP--V---------TSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKD-PAVSFAK-----FS-PNGKFIL 208 (312)
Q Consensus 149 --~~~--v---------~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~-----~~-~~~~~l~ 208 (312)
-.+ | +-..-.+++..=+.|..-|.|-+||+. +..++++..... ..-.-++ |. ..+.+|+
T Consensus 187 agyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLV 265 (336)
T TIGR03118 187 AGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLV 265 (336)
T ss_pred CCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEE
Confidence 001 1 111112222222334445789999875 555555532110 0011122 22 2455555
Q ss_pred EEecCCeEEEEEcCCCcEEEEEEccCCce
Q 021459 209 VGTLDSTLKLWNYSAGKFLKIYTGHTNKK 237 (312)
Q Consensus 209 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 237 (312)
---.||+|..||..+++.+-.+.......
T Consensus 266 GNFGDG~InaFD~~sG~~~g~L~~~~G~p 294 (336)
T TIGR03118 266 GNFGDGTINAYDPQSGAQLGQLLDPDNHP 294 (336)
T ss_pred eecCCceeEEecCCCCceeeeecCCCCCe
Confidence 44569999999999998887776554443
No 445
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.11 E-value=14 Score=34.99 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=86.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEE-------------EEEEcc--CCCeEEEEcC----------CCeE
Q 021459 34 GTLLASASLDKTVIIWSASSLALVHRFVGHSEGIS-------------DLAWSS--DSHYICSASD----------DRTL 88 (312)
Q Consensus 34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------d~~v 88 (312)
+..|+.++.|+.+.-.|..+++.+..+.. .+.|. .+.-.| .+..+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 45788888899999999999988765431 11110 011112 1345556642 6889
Q ss_pred EEEeCCCCceeeeeeecc--------c--------ccE-EEEEEecCCCEEEEee------------------cCCcEEE
Q 021459 89 RIWDARTPFDCLKTLRGH--------S--------DFV-FCVNFNPQSNLIVSGS------------------FDESIRI 133 (312)
Q Consensus 89 ~~wd~~~~~~~~~~~~~~--------~--------~~v-~~~~~~~~~~~l~s~~------------------~dg~i~~ 133 (312)
+-+|.+++...-+...+. . ..+ ...+++++...++.+. ..++|.-
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 999998865432211110 0 011 2344555544443321 1345666
Q ss_pred EEcCCCeEEEEeeecCcCe---------EEEEEcc-CCC---EEEEeeCCCeEEEEeCCCCceee
Q 021459 134 WEVKTGKCTRVIRAHSMPV---------TSVHFNR-DGS---LIVSGSHDGTCKIWDAGEGACLK 185 (312)
Q Consensus 134 wd~~~~~~~~~~~~~~~~v---------~~~~~~~-~~~---~l~~~~~d~~i~iwd~~~~~~~~ 185 (312)
.|.++|+..-.++.....+ .-+.+.. +|+ .++.++.+|.+.++|-++++.+.
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 7888888776665422111 1122222 553 78899999999999998887654
No 446
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=91.07 E-value=9 Score=32.72 Aligned_cols=196 Identities=16% Similarity=0.108 Sum_probs=93.1
Q ss_pred eEEEEcCCCeEEEEeCCCCceeeee-eecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecC-cCeEEE
Q 021459 78 YICSASDDRTLRIWDARTPFDCLKT-LRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHS-MPVTSV 155 (312)
Q Consensus 78 ~l~~~~~d~~v~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~ 155 (312)
.++.+..+|.+.-.|.++....-.. .......+..-....+|+ ++.++.+|.++.+|.++|+..-...... ..+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 4445567887777777765422110 010011222222233554 7778888888889988888766655444 111111
Q ss_pred EEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCC--CCcEEEEEECCCCCEEEEEec--CCeEEEEEcCCCcEEEEEE
Q 021459 156 HFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDK--DPAVSFAKFSPNGKFILVGTL--DSTLKLWNYSAGKFLKIYT 231 (312)
Q Consensus 156 ~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~ 231 (312)
..-.++ .+..++.++.+...|..+++..-...... ...+..... .....+..+.. ++.+.-+|..+|.......
T Consensus 149 ~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 149 PVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 112233 33444467888877777766543321111 111111101 12234444444 5566677777776654421
Q ss_pred ccCCce-eEEEEEEEccC-----CcEEEEeecCCeEEEEECCchheeeccc
Q 021459 232 GHTNKK-YCITSTFSVTN-----GKYIVSGSEDNCVYVWDLQQKTMIQKLD 276 (312)
Q Consensus 232 ~~~~~~-~~~~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 276 (312)
...... ..+........ +.-+..++.+|.+...|..+++.+-+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence 111000 00000000011 1223556667777777777776655443
No 447
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.02 E-value=2 Score=32.23 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=23.5
Q ss_pred CeEEEEEccCC------CEEEEeeCCCeEEEEeCC
Q 021459 151 PVTSVHFNRDG------SLIVSGSHDGTCKIWDAG 179 (312)
Q Consensus 151 ~v~~~~~~~~~------~~l~~~~~d~~i~iwd~~ 179 (312)
.+..++|||.| -+|++.+.++.+.+|...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 68899999954 267888899999999755
No 448
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.03 E-value=19 Score=35.34 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=26.8
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcc
Q 021459 24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLA 55 (312)
Q Consensus 24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~ 55 (312)
.-..++|+|...++|.+..+|.|.++-....+
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceE
Confidence 45678999999999999999999999765443
No 449
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.63 E-value=12 Score=32.02 Aligned_cols=53 Identities=15% Similarity=0.328 Sum_probs=25.8
Q ss_pred CCCEEEEeecC-----------CcEEEEEcCCCeEEEEeeecCcCeE-EEEEc-cCCCEEEEeeCC
Q 021459 118 QSNLIVSGSFD-----------ESIRIWEVKTGKCTRVIRAHSMPVT-SVHFN-RDGSLIVSGSHD 170 (312)
Q Consensus 118 ~~~~l~s~~~d-----------g~i~~wd~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~l~~~~~d 170 (312)
++.+++.|+.. ..+..||..+.+-...-.....+.. ..+.. -++++.+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 45566666643 2477788876653322110011111 11122 367777777754
No 450
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.32 E-value=3.1 Score=37.73 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=42.2
Q ss_pred CCCeEEEEcCCCeEEEEeCCC----Cceeee----------eee-----------cccccEEEEEEec----CCCEEEEe
Q 021459 75 DSHYICSASDDRTLRIWDART----PFDCLK----------TLR-----------GHSDFVFCVNFNP----QSNLIVSG 125 (312)
Q Consensus 75 ~~~~l~~~~~d~~v~~wd~~~----~~~~~~----------~~~-----------~~~~~v~~~~~~~----~~~~l~s~ 125 (312)
+...++.+..||.+....... +..... .+. .........+.+. +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 666777778888887776542 110000 000 0112344455555 66899999
Q ss_pred ecCCcEEEEEcCCCeEEEEe
Q 021459 126 SFDESIRIWEVKTGKCTRVI 145 (312)
Q Consensus 126 ~~dg~i~~wd~~~~~~~~~~ 145 (312)
+.|+.+|+||+.+++++...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEe
Confidence 99999999999999985543
No 451
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.27 E-value=14 Score=32.02 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=77.9
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCc-e---ee
Q 021459 25 VSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDARTPF-D---CL 100 (312)
Q Consensus 25 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~-~---~~ 100 (312)
...+..++++.+++.+..-..++-|+-....-...-......++.+.+.+++..++++ ..|.+.. ....+. . ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence 4455667888877776554333444432110011112234568899999999888766 5565433 222221 0 11
Q ss_pred eeeec--ccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee---ecCcCeEEEEEccCCCEEEEeeCCCeEEE
Q 021459 101 KTLRG--HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR---AHSMPVTSVHFNRDGSLIVSGSHDGTCKI 175 (312)
Q Consensus 101 ~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (312)
..... ....+..+.|.++++.+++ +.+|.+..- ...++.-...+ .-....+.+.|.++++.+++| .+|.|.-
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~ 395 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLR 395 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEE
Confidence 11111 1134778888877666555 566766554 34444322222 123457888887776655554 5666544
Q ss_pred E
Q 021459 176 W 176 (312)
Q Consensus 176 w 176 (312)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 3
No 452
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=89.18 E-value=3.2 Score=35.77 Aligned_cols=157 Identities=13% Similarity=0.098 Sum_probs=84.7
Q ss_pred CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeee-ecccc----cEE-EEEEecCCCEEEEeecCCcEEEE-EcC
Q 021459 65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTL-RGHSD----FVF-CVNFNPQSNLIVSGSFDESIRIW-EVK 137 (312)
Q Consensus 65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~-~~~~~----~v~-~~~~~~~~~~l~s~~~dg~i~~w-d~~ 137 (312)
..|..+-..|||+.|..-+. ..+.++++.+..-..+.+ ....+ .|. ++..-..+.-++.++.||-|.-| |.+
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence 44666778899997776544 577788775421111111 10011 011 11112234567888899988776 554
Q ss_pred CCeE-----EEEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEec
Q 021459 138 TGKC-----TRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTL 212 (312)
Q Consensus 138 ~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
.+.. ++.++-...++..+.-..+.+-+++-+..|++.++.....+.+... .-......+.++|++.++++- .
T Consensus 300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--~~~~~~~~~~~Sp~~~~Ll~e-~ 376 (733)
T COG4590 300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--RAYQAPQLVAMSPNQAYLLSE-D 376 (733)
T ss_pred cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--hhhcCcceeeeCcccchheee-c
Confidence 3321 1222222233333333334456777778888887765443322211 111234567899999998865 4
Q ss_pred CCeEEEEEcCCCc
Q 021459 213 DSTLKLWNYSAGK 225 (312)
Q Consensus 213 d~~i~v~d~~~~~ 225 (312)
.|.++++.+++..
T Consensus 377 ~gki~~~~l~Nr~ 389 (733)
T COG4590 377 QGKIRLAQLENRN 389 (733)
T ss_pred CCceEEEEecCCC
Confidence 5678888876543
No 453
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.18 E-value=12 Score=31.34 Aligned_cols=104 Identities=15% Similarity=0.248 Sum_probs=59.5
Q ss_pred CCEEEEEEccCCCeEEEEcCCCe------EEEEeCCCC---ceeee-----eeecccc--------cEEEEEEecCCCEE
Q 021459 65 EGISDLAWSSDSHYICSASDDRT------LRIWDARTP---FDCLK-----TLRGHSD--------FVFCVNFNPQSNLI 122 (312)
Q Consensus 65 ~~v~~~~~~~~~~~l~~~~~d~~------v~~wd~~~~---~~~~~-----~~~~~~~--------~v~~~~~~~~~~~l 122 (312)
+.+..|.+.+++..+++.+++|. +...++... ...+. .+....+ -.-.+++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45677888865555666677776 554444320 00000 1111111 22356777788888
Q ss_pred EEeecC------CcEEEEEcCCCeEEEEee---------------ecCcCeEEEEEccCCCEEEEeeC
Q 021459 123 VSGSFD------ESIRIWEVKTGKCTRVIR---------------AHSMPVTSVHFNRDGSLIVSGSH 169 (312)
Q Consensus 123 ~s~~~d------g~i~~wd~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
++.-.+ ..|..++.. |+....+. ......-+++++|+|+.|+++.+
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 877667 778888866 55433321 11234678999999996665543
No 454
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=8.7 Score=29.59 Aligned_cols=101 Identities=14% Similarity=0.130 Sum_probs=50.4
Q ss_pred CCEEEEeecC--CcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEE-EEeeCCCeEEEEeCCCCceeeEcccCCCCcE
Q 021459 119 SNLIVSGSFD--ESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLI-VSGSHDGTCKIWDAGEGACLKTLIDDKDPAV 195 (312)
Q Consensus 119 ~~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (312)
++++.+.+.- ..|++||+.+++.+....-....+..=-...-+..+ ...=.+|.-..+|.++-+.+.++.-..+.
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-- 133 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-- 133 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc--
Confidence 4555555543 469999999998765443221111111111112222 22335566677777765555444322211
Q ss_pred EEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459 196 SFAKFSPNGKFILVGTLDSTLKLWNYSA 223 (312)
Q Consensus 196 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 223 (312)
.. ...|++.|..+....+++.-|..+
T Consensus 134 Wg--Lt~d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 134 WG--LTSDDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred ee--eecCCcceEeeCCceEEEecCHHH
Confidence 11 234555666665555666655443
No 455
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.94 E-value=0.053 Score=46.34 Aligned_cols=143 Identities=16% Similarity=0.266 Sum_probs=91.6
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEE-EcCCCeEEEEeCCCCceeeeeeec
Q 021459 27 CVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICS-ASDDRTLRIWDARTPFDCLKTLRG 105 (312)
Q Consensus 27 ~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~v~~wd~~~~~~~~~~~~~ 105 (312)
...|-|.+.-++.++.+..+..||-..... ... ..+.....++|..++..++. +-..+.+.+||+.+.....-...+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~-le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVI-LEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhccee-ccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 456778777788888888888887543222 111 23445567889888875554 445678999998753221111111
Q ss_pred ccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEeeCCCeE
Q 021459 106 HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGSHDGTC 173 (312)
Q Consensus 106 ~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 173 (312)
...-.-..|++....++.+...|.+.+++-.+.+.+.....|...+.++++.+.+. .+.++.|..+
T Consensus 117 -~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 117 -TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTL 182 (615)
T ss_pred -cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHH
Confidence 11111256788778888888899999998776655545545778899999988764 4555555443
No 456
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.90 E-value=13 Score=31.13 Aligned_cols=66 Identities=17% Similarity=0.105 Sum_probs=33.1
Q ss_pred CCCeEEEEcC-----CCeEEEEeCCCCc-eeeeeeecccccEEEEEEecCCCEEEEeecCC----cEEEEEcCCCeE
Q 021459 75 DSHYICSASD-----DRTLRIWDARTPF-DCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDE----SIRIWEVKTGKC 141 (312)
Q Consensus 75 ~~~~l~~~~~-----d~~v~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg----~i~~wd~~~~~~ 141 (312)
++++.+.|+. ...+..||+.+.. ..+..+.... ........-++++.+.|+.++ .+..||+++.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 4556666653 2357788876532 1111111111 111122233566777777654 356888887653
No 457
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.83 E-value=20 Score=33.38 Aligned_cols=103 Identities=11% Similarity=0.112 Sum_probs=63.3
Q ss_pred CCCEEEEeecCCcEEEEEcCC-------C----e---------EEEEeeecCcCeEEEEEc--cCCCEEEEeeCCCeEEE
Q 021459 118 QSNLIVSGSFDESIRIWEVKT-------G----K---------CTRVIRAHSMPVTSVHFN--RDGSLIVSGSHDGTCKI 175 (312)
Q Consensus 118 ~~~~l~s~~~dg~i~~wd~~~-------~----~---------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i 175 (312)
..+.|+.+..||.|.+|.+++ . . +-..+ .....+++++++ ...+++|+++....|.+
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 446788999999999997521 1 0 00111 123467899998 77888888888888888
Q ss_pred EeCCC--Cceee--E-cccCCCCcEEEEEECC--CCC-EEEEEecCCeEEEEEc
Q 021459 176 WDAGE--GACLK--T-LIDDKDPAVSFAKFSP--NGK-FILVGTLDSTLKLWNY 221 (312)
Q Consensus 176 wd~~~--~~~~~--~-~~~~~~~~~~~~~~~~--~~~-~l~~~~~d~~i~v~d~ 221 (312)
|-... .+... . ...+.-+.++++...- .|. +|++++..|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 75432 11111 1 1122234455444332 233 7888899999998887
No 458
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.55 E-value=16 Score=31.82 Aligned_cols=143 Identities=14% Similarity=0.177 Sum_probs=85.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCCcc-----eEEEeeeccCCEEEEEEcc-----CCCeEEEEcCCCeEEEEeCCCC--c---
Q 021459 33 DGTLLASASLDKTVIIWSASSLA-----LVHRFVGHSEGISDLAWSS-----DSHYICSASDDRTLRIWDARTP--F--- 97 (312)
Q Consensus 33 ~~~~l~t~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~~wd~~~~--~--- 97 (312)
+...|+.|+.+|.++||+..... ++.. ..-..+|..++.-. +...||+ -.-+.+.+|.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34589999999999999876433 1111 12356788776542 2234544 56778888876221 0
Q ss_pred ---eeeeeeeccc--ccEEEEEEec----C-CCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEe
Q 021459 98 ---DCLKTLRGHS--DFVFCVNFNP----Q-SNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSG 167 (312)
Q Consensus 98 ---~~~~~~~~~~--~~v~~~~~~~----~-~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
-.+.....|. .....++..| . ...+..-+.||.+.+|+-+.......+.. -.-.-.+.+.+....|+++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 1122223332 2223333333 2 35788889999999999665433333322 1112346778888889999
Q ss_pred eCCCeEEEEeC
Q 021459 168 SHDGTCKIWDA 178 (312)
Q Consensus 168 ~~d~~i~iwd~ 178 (312)
+.+..+..|..
T Consensus 193 sss~~l~~Yky 203 (418)
T PF14727_consen 193 SSSWTLECYKY 203 (418)
T ss_pred cCceeEEEecH
Confidence 98888887753
No 459
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.04 E-value=22 Score=32.95 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=40.6
Q ss_pred EEECCCCCEEEEEeCC----------CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459 28 VKFSNDGTLLASASLD----------KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSASDDRTLRIWDART 95 (312)
Q Consensus 28 ~~~s~~~~~l~t~~~d----------~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~ 95 (312)
++..|-|.-||..-.+ -.|+|++.. |.++.++.-....+-.+.|+.+..+| +...+|.+++|++..
T Consensus 38 fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 38 FACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELI-CVQKDGTVHVYGLLG 113 (829)
T ss_pred EEecccCCceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEE-EEeccceEEEeecch
Confidence 4445555545444333 347777755 34433333233477789999777655 557999999999754
No 460
>PRK13684 Ycf48-like protein; Provisional
Probab=87.78 E-value=16 Score=30.85 Aligned_cols=152 Identities=14% Similarity=0.101 Sum_probs=73.7
Q ss_pred cccEEEEEEecCCCEEEEeecCCcEEE-EEcCCCeEEEEe-eecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCcee
Q 021459 107 SDFVFCVNFNPQSNLIVSGSFDESIRI-WEVKTGKCTRVI-RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACL 184 (312)
Q Consensus 107 ~~~v~~~~~~~~~~~l~s~~~dg~i~~-wd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (312)
...+..+.+.|++..+++ +..|.+.. +| ..++.-... ......++.+.+.++++.++++ ..|.+.+=....+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-SSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEE-eCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 346778888888766555 44565543 22 222222222 2234568899999998877665 4566643222222211
Q ss_pred eEcccC---CCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCc-eeEEEEEEEccCCcEEEEeecCCe
Q 021459 185 KTLIDD---KDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNK-KYCITSTFSVTNGKYIVSGSEDNC 260 (312)
Q Consensus 185 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~ 260 (312)
...... ....+..+.+.+++..+++ +.+|.+.. ....++.-......... .......+. .+++.+ ..+..|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~-~~~~~~-~~G~~G~ 324 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFL-DPEKGF-VLGQRGV 324 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEEE-cCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEe-CCCceE-EECCCce
Confidence 111111 1123455667887775554 45665543 33333322221111111 112222232 334444 4567788
Q ss_pred EEEEE
Q 021459 261 VYVWD 265 (312)
Q Consensus 261 i~iwd 265 (312)
|.-|+
T Consensus 325 il~~~ 329 (334)
T PRK13684 325 LLRYV 329 (334)
T ss_pred EEEec
Confidence 87775
No 461
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.76 E-value=2.9 Score=22.37 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=22.8
Q ss_pred CCCCEEEEEe-CCCeEEEEeCCCcceEEEeee
Q 021459 32 NDGTLLASAS-LDKTVIIWSASSLALVHRFVG 62 (312)
Q Consensus 32 ~~~~~l~t~~-~d~~i~vw~~~~~~~~~~~~~ 62 (312)
|+++.|+.+. .++.|.++|..+++.+.++..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 5677665544 578999999988887776654
No 462
>PLN02153 epithiospecifier protein
Probab=87.73 E-value=16 Score=30.85 Aligned_cols=108 Identities=12% Similarity=0.147 Sum_probs=52.5
Q ss_pred CCCEEEEeecC-----------CcEEEEEcCCCeEEEEeeec----CcC-eEEEEEccCCCEEEEeeCC-----------
Q 021459 118 QSNLIVSGSFD-----------ESIRIWEVKTGKCTRVIRAH----SMP-VTSVHFNRDGSLIVSGSHD----------- 170 (312)
Q Consensus 118 ~~~~l~s~~~d-----------g~i~~wd~~~~~~~~~~~~~----~~~-v~~~~~~~~~~~l~~~~~d----------- 170 (312)
+++.++.|+.+ ..+.+||.++.+-.. +... ... -.+++. -++++++.++.+
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~ 214 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDY 214 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccce
Confidence 45666777653 247788887664322 1111 000 111222 255666655432
Q ss_pred --CeEEEEeCCCCceeeEcc-cC-CCCcEEEEEECCCCCEEEEEecC--------------CeEEEEEcCCCcEE
Q 021459 171 --GTCKIWDAGEGACLKTLI-DD-KDPAVSFAKFSPNGKFILVGTLD--------------STLKLWNYSAGKFL 227 (312)
Q Consensus 171 --~~i~iwd~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~d--------------~~i~v~d~~~~~~~ 227 (312)
..+.+||+.+.+...... .. ..+.........++++++.|+.. +.+..||..+.+..
T Consensus 215 ~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 215 ESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred ecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 457889988765543211 10 11111111222356677777742 25777887666543
No 463
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.67 E-value=5.3 Score=36.23 Aligned_cols=36 Identities=22% Similarity=0.468 Sum_probs=27.4
Q ss_pred EEEEECC----CCCEEEEEecCCeEEEEEcCCCcEEEEEE
Q 021459 196 SFAKFSP----NGKFILVGTLDSTLKLWNYSAGKFLKIYT 231 (312)
Q Consensus 196 ~~~~~~~----~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 231 (312)
.....+. +..+|++-+.|+.+|+||+.++.++....
T Consensus 218 ~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 218 ASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred ceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 3344555 67899999999999999999999866543
No 464
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.51 E-value=12 Score=29.38 Aligned_cols=131 Identities=15% Similarity=0.225 Sum_probs=76.0
Q ss_pred CEEEEEEccCCCeEEEEcC----------CCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEE-EeecCCcEEEE
Q 021459 66 GISDLAWSSDSHYICSASD----------DRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV-SGSFDESIRIW 134 (312)
Q Consensus 66 ~v~~~~~~~~~~~l~~~~~----------d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~~w 134 (312)
..+.-..+|+|++.. |.. .|.++.|-.... +......-+.-..++|+.+.+.+. +-+.+-+|.-|
T Consensus 110 R~NDgkvdP~Gryy~-GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYG-GTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred ccccCccCCCCceee-eeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 344556788998843 322 144555543221 111222222234577887776654 44556677667
Q ss_pred E--cCCCeE-----EEEeee---cCc-CeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEEC
Q 021459 135 E--VKTGKC-----TRVIRA---HSM-PVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFS 201 (312)
Q Consensus 135 d--~~~~~~-----~~~~~~---~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 201 (312)
| ..+|.. +..++. ... ..-.+++..+|++.++.-..++|...|+.+++.+.++.-. ...+++++|.
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFg 262 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFG 262 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEec
Confidence 6 555532 111211 111 1234556678889999989999999999999998887654 4456666663
No 465
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.32 E-value=8.4 Score=27.29 Aligned_cols=111 Identities=10% Similarity=0.152 Sum_probs=58.3
Q ss_pred EEecCCCEEEEeecCCcEEEEEcCCCe--------EEEEeeecCcCeEEEEEcc-----CCCEEEEeeCCCeEEEEeCCC
Q 021459 114 NFNPQSNLIVSGSFDESIRIWEVKTGK--------CTRVIRAHSMPVTSVHFNR-----DGSLIVSGSHDGTCKIWDAGE 180 (312)
Q Consensus 114 ~~~~~~~~l~s~~~dg~i~~wd~~~~~--------~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~ 180 (312)
+|......|++++..|.|.+++..... .+..+. -...|++++-.+ +...|+.|+.. .+..||+.+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEccc
Confidence 455555677778888888888765321 222222 234566665433 33466666654 788999887
Q ss_pred CceeeEc-ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcE
Q 021459 181 GACLKTL-IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKF 226 (312)
Q Consensus 181 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 226 (312)
+.-+... ..+.-..+..-.+.....-++..+.+-.|.-||....+.
T Consensus 83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 6543211 111111222223333233344444456677777655443
No 466
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.96 E-value=5.6 Score=29.78 Aligned_cols=31 Identities=10% Similarity=0.204 Sum_probs=24.4
Q ss_pred ccEEEEEEecCC------CEEEEeecCCcEEEEEcCC
Q 021459 108 DFVFCVNFNPQS------NLIVSGSFDESIRIWEVKT 138 (312)
Q Consensus 108 ~~v~~~~~~~~~------~~l~s~~~dg~i~~wd~~~ 138 (312)
..+..++|+|.| -.|++...++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 368899999954 3678888899999997653
No 467
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.47 E-value=18 Score=30.36 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=35.0
Q ss_pred CCcEEEEeecCCeEEEEECCchhee---ec-ccCCccceEEEEEcCCCceEEEeeecC
Q 021459 248 NGKYIVSGSEDNCVYVWDLQQKTMI---QK-LDGHTDSVISVTCHPTENKIASAGLDG 301 (312)
Q Consensus 248 ~~~~l~~~~~dg~i~iwd~~~~~~~---~~-~~~h~~~v~~l~~~p~~~~l~~~~~dg 301 (312)
.+.++++.-..+.|....+.....+ .. +......+..++..|||..+++...+|
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G 327 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDG 327 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTT
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCC
Confidence 4567777777778888777533222 12 233445789999999999888776444
No 468
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.45 E-value=3.5 Score=22.01 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=22.1
Q ss_pred cCCCEEEEee-cCCcEEEEEcCCCeEEEEeee
Q 021459 117 PQSNLIVSGS-FDESIRIWEVKTGKCTRVIRA 147 (312)
Q Consensus 117 ~~~~~l~s~~-~dg~i~~wd~~~~~~~~~~~~ 147 (312)
|+++.++++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4666665554 468899999988877766654
No 469
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.02 E-value=14 Score=28.53 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=69.0
Q ss_pred CCCEEEEEeCC--CeEEEEeCCCcceEEEeeecc-----CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeec
Q 021459 33 DGTLLASASLD--KTVIIWSASSLALVHRFVGHS-----EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRG 105 (312)
Q Consensus 33 ~~~~l~t~~~d--~~i~vw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~ 105 (312)
+|.++.+.+.- ..|++|++.+++.+....-.. ++++.+ .+.-+.++ =.+|.-..+|.++- +.+..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~---gd~~y~LT-w~egvaf~~d~~t~-~~lg~~~- 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL---GDYFYQLT-WKEGVAFKYDADTL-EELGRFS- 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec---cceEEEEE-eccceeEEEChHHh-hhhcccc-
Confidence 34666665543 468999999887765432111 112111 11112333 25677777877652 3333322
Q ss_pred ccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee--ecCcCe---EEEEEccCCCEEEEeeCCCeEEEEeCCC
Q 021459 106 HSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--AHSMPV---TSVHFNRDGSLIVSGSHDGTCKIWDAGE 180 (312)
Q Consensus 106 ~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~v---~~~~~~~~~~~l~~~~~d~~i~iwd~~~ 180 (312)
..+.-+.++ .|++.|+.++...+++.-|.++-......+ ....|| +-+.|- +|...+-.=.+..|...|..+
T Consensus 129 y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 129 YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCC
Confidence 122333443 344556666666677777765533322221 112222 334442 455555444444555555555
Q ss_pred Ccee
Q 021459 181 GACL 184 (312)
Q Consensus 181 ~~~~ 184 (312)
|+..
T Consensus 206 GrV~ 209 (262)
T COG3823 206 GRVV 209 (262)
T ss_pred CcEE
Confidence 5543
No 470
>PLN02193 nitrile-specifier protein
Probab=86.00 E-value=24 Score=31.34 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=69.8
Q ss_pred CCEEEEeecC-------CcEEEEEcCCCeEEEEeeec-CcC----eEEEEEccCCCEEEEeeCC-----CeEEEEeCCCC
Q 021459 119 SNLIVSGSFD-------ESIRIWEVKTGKCTRVIRAH-SMP----VTSVHFNRDGSLIVSGSHD-----GTCKIWDAGEG 181 (312)
Q Consensus 119 ~~~l~s~~~d-------g~i~~wd~~~~~~~~~~~~~-~~~----v~~~~~~~~~~~l~~~~~d-----~~i~iwd~~~~ 181 (312)
+..++.|+.+ ..+..||+.+.+-.. .... ..+ .......-++.+++.|+.+ +.+..+|+.+.
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 4556666643 247788887764332 1110 011 1111112255666777654 35778898876
Q ss_pred ceeeEcccC--CCCcEEEEEECCCCCEEEEEecC-----CeEEEEEcCCCcEEEEEEc--cCCceeEEEEEEEccCCcEE
Q 021459 182 ACLKTLIDD--KDPAVSFAKFSPNGKFILVGTLD-----STLKLWNYSAGKFLKIYTG--HTNKKYCITSTFSVTNGKYI 252 (312)
Q Consensus 182 ~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d-----~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l 252 (312)
+........ ..+........-++++++.|+.+ ..+..||+.+.+....-.. ........... ..+++++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~--~~~gkiy 332 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLE--VVQGKVW 332 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEE--EECCcEE
Confidence 543311110 11111111122355666777654 3467788777655332110 00000111111 1246677
Q ss_pred EEeecC----CeEEEEECCch
Q 021459 253 VSGSED----NCVYVWDLQQK 269 (312)
Q Consensus 253 ~~~~~d----g~i~iwd~~~~ 269 (312)
+.++.+ ..+.+||+.+.
T Consensus 333 viGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 333 VVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred EEECCCCCccCceEEEECCCC
Confidence 776655 45888998764
No 471
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.87 E-value=5.9 Score=34.90 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=51.7
Q ss_pred ccceEEEEECCCCCEEEEEeCCCeEEEEe---------CCCcceEE--E-------ee--eccCCEEEEEEccCC---Ce
Q 021459 22 SRAVSCVKFSNDGTLLASASLDKTVIIWS---------ASSLALVH--R-------FV--GHSEGISDLAWSSDS---HY 78 (312)
Q Consensus 22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~---------~~~~~~~~--~-------~~--~~~~~v~~~~~~~~~---~~ 78 (312)
.-.|..+..++.|..++-+|.+|.+..+= ++.++..- + +. ...-.+...+|+|+. ..
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 44678889999999999999999765542 12232211 1 11 111245678999975 57
Q ss_pred EEEEcCCCeEEEEeCCCCce
Q 021459 79 ICSASDDRTLRIWDARTPFD 98 (312)
Q Consensus 79 l~~~~~d~~v~~wd~~~~~~ 98 (312)
|..-+.|..+++||+....+
T Consensus 183 L~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEEEecCcEEEEEecCCcch
Confidence 77778899999999876433
No 472
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.49 E-value=4.9 Score=34.68 Aligned_cols=163 Identities=13% Similarity=0.116 Sum_probs=87.6
Q ss_pred eeecccccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEE-Eeeec-cC----CEE-EEEEccCCCeEEEEcCCCeE
Q 021459 16 KTLTAHSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLALVH-RFVGH-SE----GIS-DLAWSSDSHYICSASDDRTL 88 (312)
Q Consensus 16 ~~~~~h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~-~~~~~-~~----~v~-~~~~~~~~~~l~~~~~d~~v 88 (312)
+++......|..+-..|||+.+..-+. ..+.|+++.+..... ++... .+ .|+ ++..-.-|.-|+.++.||-|
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v 292 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV 292 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence 335556677888889999997765444 567777765433211 11111 11 111 11122345567788899988
Q ss_pred EEE-eCCCCcee----eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCE
Q 021459 89 RIW-DARTPFDC----LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSL 163 (312)
Q Consensus 89 ~~w-d~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 163 (312)
.-| |++..... ++.++-....+..+.-....+-+++-+.+|++..+.....+.+-... -.....-++++|++.+
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSPNQAY 371 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCcccch
Confidence 887 54432111 11111111222222111123457777888888877654444332222 1224567889999988
Q ss_pred EEEeeCCCeEEEEeCCCC
Q 021459 164 IVSGSHDGTCKIWDAGEG 181 (312)
Q Consensus 164 l~~~~~d~~i~iwd~~~~ 181 (312)
+++- ..|.++++.+.+.
T Consensus 372 Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 372 LLSE-DQGKIRLAQLENR 388 (733)
T ss_pred heee-cCCceEEEEecCC
Confidence 7754 4567888876553
No 473
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=84.66 E-value=3.5 Score=26.90 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=34.1
Q ss_pred EEeecCCeEEEEECCchheeecccCCccceEEEEEcCCCceEEEeeecCCeeEEEEe
Q 021459 253 VSGSEDNCVYVWDLQQKTMIQKLDGHTDSVISVTCHPTENKIASAGLDGDRTVRVWV 309 (312)
Q Consensus 253 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~p~~~~l~~~~~dgd~~v~iw~ 309 (312)
..+..+|.+.-||..+++....+.+- .--+.|+++|++..++.+-.-.-.-.|.|.
T Consensus 31 le~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~Et~~~Ri~rywl 86 (89)
T PF03088_consen 31 LEGRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAETGRYRILRYWL 86 (89)
T ss_dssp HHT---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred ecCCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence 34567889999999887653333332 245899999999988776444344555553
No 474
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.48 E-value=4.3 Score=21.36 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=19.7
Q ss_pred ecccccceEEEEECCCCCEEEEE-eCC--CeEEEE
Q 021459 18 LTAHSRAVSCVKFSNDGTLLASA-SLD--KTVIIW 49 (312)
Q Consensus 18 ~~~h~~~v~~~~~s~~~~~l~t~-~~d--~~i~vw 49 (312)
+......-....|||||+.|+-. ..+ |...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34455567788999999977654 444 555554
No 475
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.36 E-value=0.15 Score=43.78 Aligned_cols=145 Identities=10% Similarity=0.216 Sum_probs=87.5
Q ss_pred EEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEE-EeecCCcEEEEEcCCCeEEEEe
Q 021459 67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIV-SGSFDESIRIWEVKTGKCTRVI 145 (312)
Q Consensus 67 v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~~wd~~~~~~~~~~ 145 (312)
.....|-+.+.-++.++.+-.+..||-... .......++....++|+.++..++ .+-..+.+.+||+.+......-
T Consensus 37 pi~~~w~~e~~nlavaca~tiv~~YD~agq---~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE 113 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQ---VILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE 113 (615)
T ss_pred cceeeEecCCCceehhhhhhHHHhhhhhcc---eecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence 345678887777888888888888885431 111112345566778888776544 4456688999999765321111
Q ss_pred eecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeE
Q 021459 146 RAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTL 216 (312)
Q Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 216 (312)
.+-...-.-+.|++....++.+...+.+.+++.++.+.+-.. +.+.......++.+.+. .+.++.|..+
T Consensus 114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~-Gkh~RRgtq~av~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVM-GKHQRRGTQIAVTLEDY-VILCDCDNTL 182 (615)
T ss_pred ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhh-cccccceeEEEecccce-eeecCcHHHH
Confidence 111111122678888888888889999999998775543322 32334455556666653 4444444443
No 476
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=83.74 E-value=37 Score=31.44 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred ccceEEEEECCCCCEEEEEeCCCeEEEEeC---------CCcceEEEeeeccCCEEEEEEccCCCeEEEEcC-CC---eE
Q 021459 22 SRAVSCVKFSNDGTLLASASLDKTVIIWSA---------SSLALVHRFVGHSEGISDLAWSSDSHYICSASD-DR---TL 88 (312)
Q Consensus 22 ~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~---~v 88 (312)
++.|-+++|.++++.++..-.+|.|.+|+. .....-..-..+..-|..........++++.+. ++ ..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Q ss_pred EEEeCCCCceeeeeee---cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEeeec-------CcCeEEEEEc
Q 021459 89 RIWDARTPFDCLKTLR---GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIRAH-------SMPVTSVHFN 158 (312)
Q Consensus 89 ~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~~ 158 (312)
+++.+......+..+. .+........|.-+...|.-- .+++|.+|++.+-+..+++... ...+.-...+
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s 287 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPS 287 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeecCC
Q ss_pred cCCCEEEEeeCCCeEEEEeC
Q 021459 159 RDGSLIVSGSHDGTCKIWDA 178 (312)
Q Consensus 159 ~~~~~l~~~~~d~~i~iwd~ 178 (312)
++.-++ +.++.|.+.|+
T Consensus 288 ~nRvLL---s~~nkIyLld~ 304 (670)
T PF10395_consen 288 PNRVLL---SVNNKIYLLDL 304 (670)
T ss_pred CCeEEE---EcCCEEEEEee
No 477
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=83.45 E-value=26 Score=29.49 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=53.1
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCcce---EEEe----eeccCCEEEEEEccC---CCeEEEEcC-C--------
Q 021459 25 VSCVKFSNDGTLLASASLDKTVIIWSASSLAL---VHRF----VGHSEGISDLAWSSD---SHYICSASD-D-------- 85 (312)
Q Consensus 25 v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~l~~~~~-d-------- 85 (312)
-..++|.|+|+++++ -..|.|++++ ..+.. +..+ .........++++|+ ..+|..... .
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 357899999988776 4589999998 33332 2222 123456789999995 233333222 1
Q ss_pred CeEEEEeCCCC-------ceeeeeeec---ccccEEEEEEecCCCEEEEeecC
Q 021459 86 RTLRIWDARTP-------FDCLKTLRG---HSDFVFCVNFNPQSNLIVSGSFD 128 (312)
Q Consensus 86 ~~v~~wd~~~~-------~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d 128 (312)
..|.-|..... ...+..+.. .......+.|.||+.++++.+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 12333333221 111112221 22345679999999777666543
No 478
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=83.40 E-value=23 Score=28.95 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=84.3
Q ss_pred CCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeee-cccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE
Q 021459 65 EGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLR-GHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR 143 (312)
Q Consensus 65 ~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~ 143 (312)
.-+..+.++ +++...+..+.-+++.|+.++......-. .-++...++.. .|++...+..+.-..+.|+.+.+...
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 344556665 45666666777899999987654322111 11233344433 47888888867667788887654322
Q ss_pred ---EeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEcc-cCCCCcEEEEEECCCCCEEEEEecCCeEEEE
Q 021459 144 ---VIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTLI-DDKDPAVSFAKFSPNGKFILVGTLDSTLKLW 219 (312)
Q Consensus 144 ---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~ 219 (312)
...........++.+ |++-..+..|+-+.+-|+.+.....-+. ....+.+..+..+++-.+++.. +.-+.+-
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvliv 238 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIV 238 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEE
Confidence 122222223445554 5566677788889999887644322111 1123345555566665555543 2335555
Q ss_pred EcCCCc
Q 021459 220 NYSAGK 225 (312)
Q Consensus 220 d~~~~~ 225 (312)
|..+.+
T Consensus 239 d~s~~s 244 (370)
T COG5276 239 DVSGPS 244 (370)
T ss_pred ecCCCC
Confidence 655444
No 479
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=83.11 E-value=23 Score=28.69 Aligned_cols=188 Identities=14% Similarity=0.088 Sum_probs=102.8
Q ss_pred EEEEEEccCCCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEE-Ee
Q 021459 67 ISDLAWSSDSHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTR-VI 145 (312)
Q Consensus 67 v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~-~~ 145 (312)
-..++-.|||..-+++...+.+--.|..++.....-+ +....-..+...||+..-++-+.. .|.-.|-++.+..+ .+
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypL-g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPL-GSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEec-CCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 3467778888888888777777777777653222222 222223345667887766554333 45555655544322 11
Q ss_pred --eecCcCeEEEEEccCCCEEEEeeCC---------CeEEEEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCC
Q 021459 146 --RAHSMPVTSVHFNRDGSLIVSGSHD---------GTCKIWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDS 214 (312)
Q Consensus 146 --~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~ 214 (312)
+..........|.+.|.+.+++... +.|++|+... ...-.-++..|+|..-.+.-.++
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-----------G~gpyGi~atpdGsvwyaslagn 210 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-----------GGGPYGICATPDGSVWYASLAGN 210 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-----------CCCCcceEECCCCcEEEEecccc
Confidence 1123346778899999988887532 2344444322 22223345678888777766666
Q ss_pred eEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCcEEEEeecCCeEEEEECCc
Q 021459 215 TLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQ 268 (312)
Q Consensus 215 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 268 (312)
.|-..|...+.. ..+.............+..+.++.-++-...|.+..+|...
T Consensus 211 aiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 211 AIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred ceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 666666554421 11111111111112223345566667766677777776543
No 480
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=82.29 E-value=31 Score=29.59 Aligned_cols=12 Identities=8% Similarity=0.218 Sum_probs=8.8
Q ss_pred cEEEEEcCCCeE
Q 021459 130 SIRIWEVKTGKC 141 (312)
Q Consensus 130 ~i~~wd~~~~~~ 141 (312)
.+.+||..+++-
T Consensus 190 ~v~~YD~~t~~W 201 (376)
T PRK14131 190 EVLSYDPSTNQW 201 (376)
T ss_pred eEEEEECCCCee
Confidence 478899877654
No 481
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.29 E-value=35 Score=30.14 Aligned_cols=56 Identities=13% Similarity=0.144 Sum_probs=37.8
Q ss_pred cccceEEEEECCCCCEEEEEeCCCeEEEEeCCCcce--EEEe----e-eccCCEEEEEEccCC
Q 021459 21 HSRAVSCVKFSNDGTLLASASLDKTVIIWSASSLAL--VHRF----V-GHSEGISDLAWSSDS 76 (312)
Q Consensus 21 h~~~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~--~~~~----~-~~~~~v~~~~~~~~~ 76 (312)
.-..-..++|.|||++|++-...|.|++++..++.. +..+ . .-......|+++|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344566789999999888876569999987654422 1111 1 124678899999874
No 482
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=81.51 E-value=52 Score=31.63 Aligned_cols=79 Identities=6% Similarity=-0.056 Sum_probs=50.3
Q ss_pred CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEE-EcCCC-----eEEEEeCCCCceeeeeeecccccEEEEEEec
Q 021459 44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICS-ASDDR-----TLRIWDARTPFDCLKTLRGHSDFVFCVNFNP 117 (312)
Q Consensus 44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~-----~v~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 117 (312)
+.+.+-|.........-..+...|.+-+|+|||+.|+- .+.++ .|++-|+.+...-+..+......|..-...+
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e 408 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLE 408 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecC
Confidence 46666676665544321346788999999999999887 44443 4777788764433344444455666666666
Q ss_pred CCCEE
Q 021459 118 QSNLI 122 (312)
Q Consensus 118 ~~~~l 122 (312)
+|...
T Consensus 409 ~gdt~ 413 (912)
T TIGR02171 409 NGDTV 413 (912)
T ss_pred CCCeE
Confidence 66543
No 483
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=81.50 E-value=40 Score=30.30 Aligned_cols=247 Identities=13% Similarity=0.207 Sum_probs=111.6
Q ss_pred CCCCCEEEEEeCCCeEEEEeCCCcc--eEEEeeec-cCCEEEEEEccCC-CeEEEEcCCC--eEEEEeCCCCceeeeeee
Q 021459 31 SNDGTLLASASLDKTVIIWSASSLA--LVHRFVGH-SEGISDLAWSSDS-HYICSASDDR--TLRIWDARTPFDCLKTLR 104 (312)
Q Consensus 31 s~~~~~l~t~~~d~~i~vw~~~~~~--~~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~d~--~v~~wd~~~~~~~~~~~~ 104 (312)
..++..++-+..+|.+....+.... ......+. .....++++..++ .+|+.|+.-| .+..+.... .+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~-l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSN-LEVLDSLP 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESES-EEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCC-cEEEEecc
Confidence 4567788888999999877665433 12222333 4555677777665 4677776655 444444221 23333443
Q ss_pred cccccEEEEEEecC----CC------EEEEee---cCCcEEEEEcCCCeEEE--Ee--eecC--cCeEEEEEcc-CCCEE
Q 021459 105 GHSDFVFCVNFNPQ----SN------LIVSGS---FDESIRIWEVKTGKCTR--VI--RAHS--MPVTSVHFNR-DGSLI 164 (312)
Q Consensus 105 ~~~~~v~~~~~~~~----~~------~l~s~~---~dg~i~~wd~~~~~~~~--~~--~~~~--~~v~~~~~~~-~~~~l 164 (312)
.-++|..++..+. .. .+++++ .+|.+++.. .|-... .. ..-. ..++.+.... ++.++
T Consensus 298 -N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~l 374 (504)
T PF10433_consen 298 -NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYL 374 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEE
T ss_pred -CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEE
Confidence 3367777777531 11 455543 457787763 332222 11 1111 1233333222 24566
Q ss_pred EEeeCCCeEEEEeCC---CCceeeEc----ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCce
Q 021459 165 VSGSHDGTCKIWDAG---EGACLKTL----IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKK 237 (312)
Q Consensus 165 ~~~~~d~~i~iwd~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 237 (312)
+.+..+.+ +++.+. ....+... .....+.+....+. +..++=.+ ...|++.+...++....+....+.
T Consensus 375 v~S~~~~T-~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt-~~~i~l~~~~~~~~~~~w~~~~~~- 449 (504)
T PF10433_consen 375 VLSFPNET-RVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT-PKGIRLIDLEDGKLTQEWKPPAGS- 449 (504)
T ss_dssp EEEESSEE-EEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE-SSEEEEEESSSTSEEEEEE-TTS--
T ss_pred EEEcCCce-EEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe-cCeEEEEECCCCeEEEEEeCCCCC-
Confidence 66655543 344332 12222111 11111122222222 23333333 345888887777666555433222
Q ss_pred eEEEEEEEccCCcEEEEeecCCeEEEEECCchheeeccc-----CCccceEEEEEcC
Q 021459 238 YCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKLD-----GHTDSVISVTCHP 289 (312)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~h~~~v~~l~~~p 289 (312)
.+..+. -++..++.+-.+|.+..+.+.......... .....|.|+..+|
T Consensus 450 -~I~~a~--~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 450 -IIVAAS--INDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp ---SEEE--ESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred -eEEEEE--ECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 122222 235567777778888888876544432211 1356788888776
No 484
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=80.73 E-value=52 Score=31.10 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=49.0
Q ss_pred EEEEEecCCCEEEEeecCCc-----EEEEEcCCCeEEEEe--e-ecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCc
Q 021459 111 FCVNFNPQSNLIVSGSFDES-----IRIWEVKTGKCTRVI--R-AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGA 182 (312)
Q Consensus 111 ~~~~~~~~~~~l~s~~~dg~-----i~~wd~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 182 (312)
..++|-|+|..+++-+.||. |.++.. +|-....+ + .-...+...+|+-....++ ....+.+.+|-..+..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vla-v~~~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLA-VAEGNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHH-HhhcceEEEEEccceE
Confidence 45889999999998876552 445542 22111111 0 1122344556654444333 3345688999776644
Q ss_pred eeeEcccCCCCcEEEEEECCCCC
Q 021459 183 CLKTLIDDKDPAVSFAKFSPNGK 205 (312)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~ 205 (312)
...... -..+.+..+.|+|..+
T Consensus 328 WYLK~e-~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 328 WYLKVE-RQIPGISYVKWHPEEK 349 (1243)
T ss_pred EEEEEe-ecCCCcceeeeccccC
Confidence 322211 1234566778888654
No 485
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=79.54 E-value=33 Score=28.10 Aligned_cols=90 Identities=16% Similarity=0.306 Sum_probs=52.4
Q ss_pred CeEEEEeCCCcceEEEeeeccCCEEEEEEccCCCeEEEEc------CCCeEEEEeCCCCceeeeeeec-----ccccEEE
Q 021459 44 KTVIIWSASSLALVHRFVGHSEGISDLAWSSDSHYICSAS------DDRTLRIWDARTPFDCLKTLRG-----HSDFVFC 112 (312)
Q Consensus 44 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~v~~wd~~~~~~~~~~~~~-----~~~~v~~ 112 (312)
..|++||..+.+....-.+-.+.|+++.|..+.++++.|. ....+..||..+.. ...+.+ -.+++..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCCCcEEE
Confidence 4689999877655443334457899999997777777763 34567788876532 222222 2356666
Q ss_pred EEEec-CCC-EEEEee-cCC--cEEEEE
Q 021459 113 VNFNP-QSN-LIVSGS-FDE--SIRIWE 135 (312)
Q Consensus 113 ~~~~~-~~~-~l~s~~-~dg--~i~~wd 135 (312)
+.+.. |.. ..++|. .+| .|..||
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEc
Confidence 66532 333 333333 222 355565
No 486
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.51 E-value=44 Score=31.54 Aligned_cols=92 Identities=12% Similarity=0.242 Sum_probs=45.7
Q ss_pred EEEEccCCCeEEEEcCCC-----eEEEEeCCCCcee-eeeeecccccEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEE
Q 021459 69 DLAWSSDSHYICSASDDR-----TLRIWDARTPFDC-LKTLRGHSDFVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCT 142 (312)
Q Consensus 69 ~~~~~~~~~~l~~~~~d~-----~v~~wd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~ 142 (312)
.+.|-|+|..+++-..|| .|..+..+.-..- ...-.+.+..+...+|+-....++. .....|++|-..+-.-.
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav-~~~n~~~lwttkNyhWY 329 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAV-AEGNLLKLWTTKNYHWY 329 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHH-hhcceEEEEEccceEEE
Confidence 588999999999876554 4555543221000 0000112233445556544433333 34567899976654321
Q ss_pred EEeeecCcCeEEEEEccCC
Q 021459 143 RVIRAHSMPVTSVHFNRDG 161 (312)
Q Consensus 143 ~~~~~~~~~v~~~~~~~~~ 161 (312)
......-..+.-+.|+|..
T Consensus 330 LK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 330 LKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEEeecCCCcceeeecccc
Confidence 1111111234556777743
No 487
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=79.38 E-value=19 Score=27.90 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=34.9
Q ss_pred CeEEEEcCCCeEEEEeCCCC-ceeeeeeecccccEEEEEEecCCCEEEEeecC
Q 021459 77 HYICSASDDRTLRIWDARTP-FDCLKTLRGHSDFVFCVNFNPQSNLIVSGSFD 128 (312)
Q Consensus 77 ~~l~~~~~d~~v~~wd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 128 (312)
+.|+.+...+.|.+|++... .+.+..+. --+.|..+.++..|++++|--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEee
Confidence 45545456778999998732 23333443 33778899999999999986543
No 488
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=79.37 E-value=33 Score=28.11 Aligned_cols=184 Identities=15% Similarity=0.088 Sum_probs=93.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCcceEEEeee-ccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCCCceee--eeeecccccE
Q 021459 34 GTLLASASLDKTVIIWSASSLALVHRFVG-HSEGISDLAWSSDSHYICSASDDRTLRIWDARTPFDCL--KTLRGHSDFV 110 (312)
Q Consensus 34 ~~~l~t~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~~~~~~--~~~~~~~~~v 110 (312)
+++...+..+.-+++.|+.+-.....+.. ..+. ..-.|.-.|++...+..|.-+.+.|+.++.... ..........
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~g-yaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~ 174 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDG-YAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDT 174 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceeccccCCc-eEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCc
Confidence 44555566666788888876432111111 1111 123344568888888766667788887754332 1222222223
Q ss_pred EEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEEee--ecCcCeEEEEEccCCCEEEEeeCCCeEEEEeCCCCceeeEc-
Q 021459 111 FCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRVIR--AHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDAGEGACLKTL- 187 (312)
Q Consensus 111 ~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~- 187 (312)
..++.+ |++...+..|+-+.+-|+.+......+. .....+.++..+++..+++.. +--+.+-|....+....+
T Consensus 175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~g 250 (370)
T COG5276 175 HDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFG 250 (370)
T ss_pred eeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceEee
Confidence 344444 5666777788889999997654332221 112256777777665444433 223555555443322111
Q ss_pred -ccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459 188 -IDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223 (312)
Q Consensus 188 -~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 223 (312)
.... .......+.-.+++......+..+-+-|..+
T Consensus 251 syet~-~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 251 SYETS-NPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred ccccC-CcccccceecccceeeeeccccCceeEeccC
Confidence 1111 1111112333455555555555566666544
No 489
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=78.86 E-value=15 Score=23.95 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=28.1
Q ss_pred eecCCcEEEEEcCCCeEEEEeeecCcCeEEEEEccCCCEEEEee
Q 021459 125 GSFDESIRIWEVKTGKCTRVIRAHSMPVTSVHFNRDGSLIVSGS 168 (312)
Q Consensus 125 ~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
+...|.+..||..+++....+..- .-.+.+++++|+..++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEe
Confidence 445678889999998765444432 2458899999999776653
No 490
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=78.79 E-value=13 Score=28.85 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=33.7
Q ss_pred CEEEEEeCCCeEEEEeCCC--cceEEEeeeccCCEEEEEEccCCCeEEEE
Q 021459 35 TLLASASLDKTVIIWSASS--LALVHRFVGHSEGISDLAWSSDSHYICSA 82 (312)
Q Consensus 35 ~~l~t~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 82 (312)
+.|+.+...+.|.+|++.. .+++..+.. -+.|..+.++..|++|++-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEE
Confidence 4444445567899999873 344444443 3789999999999999986
No 491
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.81 E-value=63 Score=32.28 Aligned_cols=150 Identities=15% Similarity=0.309 Sum_probs=80.4
Q ss_pred EEEEEccC-CCeEEEEcCCCeEEEEeCCCCceeeeeeecccccEEEEEE--------ecCCCEEEEeecCCcEEEEEcC-
Q 021459 68 SDLAWSSD-SHYICSASDDRTLRIWDARTPFDCLKTLRGHSDFVFCVNF--------NPQSNLIVSGSFDESIRIWEVK- 137 (312)
Q Consensus 68 ~~~~~~~~-~~~l~~~~~d~~v~~wd~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~s~~~dg~i~~wd~~- 137 (312)
..+-+-|. ++.-+ +.|..+.+|+.++..+ ...+.+-...|..+.. .|.=++++.-+.--.|.++-+.
T Consensus 82 ~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e-~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWI--TIDNNLFLWNYESDNE-LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSF 158 (1311)
T ss_pred eeeccchhhcceEE--EeCCeEEEEEcCCCCc-cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEe
Confidence 34444554 33333 3588999999887433 3333343444544442 2222233333333335544321
Q ss_pred ---CCeEE-----EEeeecCcCeEEEEEccCCCEEEEeeCCCeEEEEeC----CCCc----e----------------ee
Q 021459 138 ---TGKCT-----RVIRAHSMPVTSVHFNRDGSLIVSGSHDGTCKIWDA----GEGA----C----------------LK 185 (312)
Q Consensus 138 ---~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~----~~~~----~----------------~~ 185 (312)
++... ..+...+..|.++....+|+.|++|-.+ .+|.+ .++- + +.
T Consensus 159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~ 235 (1311)
T KOG1900|consen 159 DEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLL 235 (1311)
T ss_pred ccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhh
Confidence 11110 1222335568899988899888876554 33432 1110 0 01
Q ss_pred EcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCC
Q 021459 186 TLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSA 223 (312)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 223 (312)
.+.+.....+..+..+..-+.+.+-+..+.|..||+..
T Consensus 236 ~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 236 SVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11112344567777888888888889999999999865
No 492
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=77.59 E-value=39 Score=27.96 Aligned_cols=71 Identities=21% Similarity=0.458 Sum_probs=52.2
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEeCCCcceEEEeeeccCC-----EEEEEEccCCCeEEEEcCCCeEEEEeCC
Q 021459 24 AVSCVKFSNDGTLLASASLDKTVIIWSASSLALVHRFVGHSEG-----ISDLAWSSDSHYICSASDDRTLRIWDAR 94 (312)
Q Consensus 24 ~v~~~~~s~~~~~l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d~~v~~wd~~ 94 (312)
-|+++...++|++|+++..-..|.+.+..+++.+..+.+.... -..++|-.+-+++-....++.|.++|-.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 3667788889999999998899999999999988887665221 1125555555666556678899999863
No 493
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=77.19 E-value=43 Score=28.13 Aligned_cols=103 Identities=13% Similarity=0.221 Sum_probs=59.9
Q ss_pred ccEEEEEEecCCCEEEEeecCCc------EEEEEcCC--C--eEEE-----EeeecC-c-------CeEEEEEccCCCEE
Q 021459 108 DFVFCVNFNPQSNLIVSGSFDES------IRIWEVKT--G--KCTR-----VIRAHS-M-------PVTSVHFNRDGSLI 164 (312)
Q Consensus 108 ~~v~~~~~~~~~~~l~s~~~dg~------i~~wd~~~--~--~~~~-----~~~~~~-~-------~v~~~~~~~~~~~l 164 (312)
+.++.+.+.+++..+++.+.+|. +..+++.. + ..+. .+.... . ..-++++.+++.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45677788866666777777776 55555443 1 0111 111111 1 23467787788888
Q ss_pred EEeeCC------CeEEEEeCCCCceeeEcc-c-------------CCCCcEEEEEECCCCCEEEEEe
Q 021459 165 VSGSHD------GTCKIWDAGEGACLKTLI-D-------------DKDPAVSFAKFSPNGKFILVGT 211 (312)
Q Consensus 165 ~~~~~d------~~i~iwd~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
++.-.+ -.|..++.. ++....+. . .....+..++++|+|+.|.++.
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 777666 678888865 54433321 0 1233467789999999666653
No 494
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=75.31 E-value=7.9 Score=18.77 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=16.0
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEE
Q 021459 26 SCVKFSNDGTLLASASLDKTVIIW 49 (312)
Q Consensus 26 ~~~~~s~~~~~l~t~~~d~~i~vw 49 (312)
..++.+++|+++++=..++.|+++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEEC
Confidence 456777777777776666666653
No 495
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=75.16 E-value=49 Score=27.88 Aligned_cols=41 Identities=5% Similarity=0.107 Sum_probs=19.5
Q ss_pred CcEEEEEcCCCeEEEE--eeecCcCeEEEEEccCCCEEEEeeCC
Q 021459 129 ESIRIWEVKTGKCTRV--IRAHSMPVTSVHFNRDGSLIVSGSHD 170 (312)
Q Consensus 129 g~i~~wd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d 170 (312)
..+..||..+++-... +......-.+++ .-++++.+.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeeee
Confidence 4578889877643321 110001111222 2366777777653
No 496
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=75.16 E-value=59 Score=28.77 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=34.8
Q ss_pred cEEEEEEecCCCEEEEeecCCcEEEEEcCCCeEEEE--ee-----ecCcCeEEEEEccCC
Q 021459 109 FVFCVNFNPQSNLIVSGSFDESIRIWEVKTGKCTRV--IR-----AHSMPVTSVHFNRDG 161 (312)
Q Consensus 109 ~v~~~~~~~~~~~l~s~~~dg~i~~wd~~~~~~~~~--~~-----~~~~~v~~~~~~~~~ 161 (312)
.-+.++|.||++.|++--..|.|++++..++..... +. ........++++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 456789999998777755469999988655432111 11 123557899999873
No 497
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.13 E-value=88 Score=30.26 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=41.0
Q ss_pred EECCCCCEEEEEeCCCeEEEEeCCCcce---EEE------ee--eccCCEEEEEEccCCCeEEEEcCCCeEEEEeCCC
Q 021459 29 KFSNDGTLLASASLDKTVIIWSASSLAL---VHR------FV--GHSEGISDLAWSSDSHYICSASDDRTLRIWDART 95 (312)
Q Consensus 29 ~~s~~~~~l~t~~~d~~i~vw~~~~~~~---~~~------~~--~~~~~v~~~~~~~~~~~l~~~~~d~~v~~wd~~~ 95 (312)
++..-|+.+..|+.+|.+.+|.+..... ... +. -+..+|..+...+.-.++++- .|+.+.++++.+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~ 97 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPE 97 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCc
Confidence 3345688899999999999997764311 000 10 124567667666655555544 466777777654
No 498
>KOG2727 consensus Rab3 GTPase-activating protein, non-catalytic subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.00 E-value=18 Score=34.36 Aligned_cols=244 Identities=14% Similarity=0.217 Sum_probs=0.0
Q ss_pred CCCCCE----EEEEeCCCeEEEEeCCCcceEEEeeeccCCEEEEEEcc--CCCeEEEEcCCCeEEE--------------
Q 021459 31 SNDGTL----LASASLDKTVIIWSASSLALVHRFVGHSEGISDLAWSS--DSHYICSASDDRTLRI-------------- 90 (312)
Q Consensus 31 s~~~~~----l~t~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~-------------- 90 (312)
+.+|.. +|.|..+|.+++| ..+|.++.....|.++|..+.+-. .+..+.+....+.+.+
T Consensus 93 s~dgr~dwtcVavGt~sGyV~FY-Te~Gvllf~Q~~~edPVl~lk~r~~k~d~~l~i~yp~~~~~I~g~sl~~~L~ncq~ 171 (1244)
T KOG2727|consen 93 SHDGRVDWTCVAVGTSSGYVLFY-TETGVLLFKQIVHEDPVLKLKVRGTKKDLMLEISYPEICIVIPGVSLRFDLSNCQS 171 (1244)
T ss_pred ccccccceeEEEEecccceEEEE-ecccHHHHHHHhccCccceEEEEEeecCcEEEEeecceEEEECCchhhhhHHHHHH
Q ss_pred -------------EeCCCCceeeeeeecccccEEEEEEecCCC-----EEEEeecC-CcEEEEEcCCCeEEEEeeecCcC
Q 021459 91 -------------WDARTPFDCLKTLRGHSDFVFCVNFNPQSN-----LIVSGSFD-ESIRIWEVKTGKCTRVIRAHSMP 151 (312)
Q Consensus 91 -------------wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~~~ 151 (312)
|+-....+....-..-...|....|+-..+ ..++++.+ |...+-..........+.....+
T Consensus 172 ~Vqkaa~Eknsn~~~~~~~~qk~~l~qdi~~~I~hai~~~~~~ppt~Dq~vtas~~~gy~a~~k~SpPrySq~vt~ge~p 251 (1244)
T KOG2727|consen 172 MVQKAAQEKNSNFWDQKNRKQKAELTQDIYQRIPHAIWNVNKNPPTVDQTVTASMPPGYLALQKPSPPRYSQAVTIGEDP 251 (1244)
T ss_pred HHHHHHHhccCCcCCccchhhhhhcccchhhccchheeecccCCccHHHhhhcccCchhhhhccCCCcceeeeEEecCCc
Q ss_pred eEEEEEccCCC--------------EEEEeeCCCeEEEEe---------------CCCCceeeEcccCCCCcEEEEEECC
Q 021459 152 VTSVHFNRDGS--------------LIVSGSHDGTCKIWD---------------AGEGACLKTLIDDKDPAVSFAKFSP 202 (312)
Q Consensus 152 v~~~~~~~~~~--------------~l~~~~~d~~i~iwd---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (312)
.....+...|+ ..++-...|...+|. .......+....+.......++.+|
T Consensus 252 f~gFf~a~eg~~~~llg~Vak~v~s~A~sn~asg~fgi~~ep~~sp~~kp~pk~~saapa~~R~~i~D~~R~ge~lslSP 331 (1244)
T KOG2727|consen 252 FIGFFRASEGRGRSLLGAVAKKVVSAAASNIASGSFGIWREPDQSPKRKPEPKTQSAAPASSRTCIKDYPRKGEKLSLSP 331 (1244)
T ss_pred eeeeeeeccccccccHHHHHHHhhhhhhhhhhhheeeccCCCCcChhhcCCCCCCcccccceeeccccCccccceeeeCC
Q ss_pred CCCEEEEEecCCeEEEEEcCCCcEEEEEEccCCceeEEEEEEEccCCc----------EEEEeecCCeEEEEECCchhee
Q 021459 203 NGKFILVGTLDSTLKLWNYSAGKFLKIYTGHTNKKYCITSTFSVTNGK----------YIVSGSEDNCVYVWDLQQKTMI 272 (312)
Q Consensus 203 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~dg~i~iwd~~~~~~~ 272 (312)
+|.+.|+...-|+|-+.|......++.+++..+.............-. +.+-+-.-|.+.+|.+.++..+
T Consensus 332 ~gtlAAVTD~lgRVlLlDta~~ivvr~wKGYRDAsc~fv~vkek~~~s~~~~sRvAlFLvIyAPRrgiLEVW~~q~gpRV 411 (1244)
T KOG2727|consen 332 SGTLAAVTDSLGRVLLLDTAALIVVRLWKGYRDASCVFVEVKEKKGKSEPVKSRVALFLVIYAPRRGILEVWQMQTGPRV 411 (1244)
T ss_pred CccEEEEecccCcEEEEehhhhhHHHHhcccccceeEEEEcccccCCCccCcCceeEEEEEecccccHHHHHHhccCCeE
Q ss_pred ecc
Q 021459 273 QKL 275 (312)
Q Consensus 273 ~~~ 275 (312)
..+
T Consensus 412 ~Af 414 (1244)
T KOG2727|consen 412 LAF 414 (1244)
T ss_pred EEE
No 499
>PRK13684 Ycf48-like protein; Provisional
Probab=73.71 E-value=54 Score=27.65 Aligned_cols=153 Identities=12% Similarity=0.159 Sum_probs=72.2
Q ss_pred cCeEEEEEccCCCEEEEeeCCCeEE-EEeCCCCceeeEcccCCCCcEEEEEECCCCCEEEEEecCCeEEEEEcCCCcEEE
Q 021459 150 MPVTSVHFNRDGSLIVSGSHDGTCK-IWDAGEGACLKTLIDDKDPAVSFAKFSPNGKFILVGTLDSTLKLWNYSAGKFLK 228 (312)
Q Consensus 150 ~~v~~~~~~~~~~~l~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 228 (312)
..+..+.+.|++.+++++. .|.+. .+|.. ++.-..........+..+.+.++++.++++ ..|.+++=....+..-.
T Consensus 173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred ceEEEEEECCCCeEEEEeC-CceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 4578889999887665554 45443 23322 111111222233456667788888877665 45666432233333212
Q ss_pred EEEcc-CCceeEEEEEEEccCCcEEEEeecCCeEEEEECCchheeecc---cCCccceEEEEEcCCCceEEEeeecCCee
Q 021459 229 IYTGH-TNKKYCITSTFSVTNGKYIVSGSEDNCVYVWDLQQKTMIQKL---DGHTDSVISVTCHPTENKIASAGLDGDRT 304 (312)
Q Consensus 229 ~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~p~~~~l~~~~~dgd~~ 304 (312)
....+ ......+......+++..++ ++.+|.|.. ....++.-... ..-......+.+..++..+++ |. .+.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~--~G~ 324 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQ--RGV 324 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CC--Cce
Confidence 11111 00111122222234455544 556776554 23222221221 122235677777766656554 42 357
Q ss_pred EEEEee
Q 021459 305 VRVWVQ 310 (312)
Q Consensus 305 v~iw~~ 310 (312)
|.-|+-
T Consensus 325 il~~~~ 330 (334)
T PRK13684 325 LLRYVG 330 (334)
T ss_pred EEEecC
Confidence 766653
No 500
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=73.58 E-value=9.6 Score=18.94 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=19.3
Q ss_pred EEEEEeCCCeEEEEeCCCcceEEE
Q 021459 36 LLASASLDKTVIIWSASSLALVHR 59 (312)
Q Consensus 36 ~l~t~~~d~~i~vw~~~~~~~~~~ 59 (312)
.++.++.++.+..+|..+++.+..
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577788889999999988877654
Done!