BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021460
         (312 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score =  215 bits (548), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 121/293 (41%), Positives = 167/293 (56%), Gaps = 8/293 (2%)

Query: 8   FSTDFVMGGXXXXXXXXXXXPIERVKLLLQNQGEMIKRGQLRRPYMGVGDCFRRVLREDG 67
           F  DF+ GG           PIERVKLLLQ Q    K+    + Y G+ DC  R+ +E G
Sbjct: 7   FLKDFLAGGVAAAISKTAVAPIERVKLLLQVQ-HASKQISAEKQYKGIIDCVVRIPKEQG 65

Query: 68  LLSFWRGNQANVIRYFPTQAFNFAFKGYFKNLF-GRSKEKDGYIKWFAGNVXXXXXXXXX 126
            LSFWRGN ANVIRYFPTQA NFAFK  +K +F G       + ++FAGN+         
Sbjct: 66  FLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGAT 125

Query: 127 XXLFLYHLDYARTRLGTDARECLISGQRQFKGLLDVYSKTLSSDGIGGLYRGFGVSIIGI 186
              F+Y LD+ARTRL  D  +   + QR+F GL +  +K   SDG+ GLY+GF VS+ GI
Sbjct: 126 SLCFVYPLDFARTRLAADVGKG--AAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 183

Query: 187 TFYRGMYFGLYDTMKPIILVGPLEGNFFASFLLGWSITSVSGVCAYPFDTLRRRMMLTSG 246
             YR  YFG+YDT K  +L  P   +   S+++  ++T+V+G+ +YPFDT+RRRMM+ SG
Sbjct: 184 IIYRAAYFGVYDTAKG-MLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSG 242

Query: 247 QP---IKYDGAAHALCEIIKLEGFRALYRGVTANMXXXXXXXXXXXXYDQLHR 296
           +    I Y G      +I K EG +A ++G  +N+            YD++ +
Sbjct: 243 RKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIKK 295


>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 99/255 (38%), Gaps = 24/255 (9%)

Query: 28  PIERVKLLLQNQGEM--IKRGQLRRPYMGVGDCFRRVLREDGLLSFWRGNQANVIRYFPT 85
           P++  K+ LQ QGE   + R      Y GV      ++R +G  S + G  A + R    
Sbjct: 21  PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSF 80

Query: 86  QAFNFAFKGYFKNLFGRSKEKDGY-IKWFAGNVXXXXXXXXXXXLFLYHLDYARTRLGTD 144
            +         K  + +  E  G   +  AG+                  D  + R    
Sbjct: 81  ASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQ-----PTDVVKVRFQAQ 135

Query: 145 ARECLISGQRQFKGLLDVYSKTLSSDGIGGLYRGFGVSIIGITFYRGMYFGLYDTMKPII 204
           AR     G R+++  ++ Y      +GI GL++G   ++             YD +K  +
Sbjct: 136 ARA---GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTL 192

Query: 205 L-----VGPLEGNFFASFLLGWSITSVSGVCAYPFDTLRRRMMLTS-GQPIKYDGAAHAL 258
           L        L  +F ++F  G+  T    V A P D ++ R M ++ GQ   Y  A H  
Sbjct: 193 LKANLMTDDLPCHFTSAFGAGFCTT----VIASPVDVVKTRYMNSALGQ---YHSAGHCA 245

Query: 259 CEIIKLEGFRALYRG 273
             +++ EG RA Y+G
Sbjct: 246 LTMLRKEGPRAFYKG 260



 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 5/155 (3%)

Query: 129 LFLYHLDYARTRL---GTDARECLISGQRQFKGLLDVYSKTLSSDGIGGLYRGFGVSIIG 185
           L  + LD A+ RL   G        +   Q++G+L      + ++G   LY G    +  
Sbjct: 17  LITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQR 76

Query: 186 ITFYRGMYFGLYDTMKPIILVGPLEGNFFASFLLGWSITSVSGVCAYPFDTLRRRMMLT- 244
              +  +  GLYD++K     G       +  L G +  +++   A P D ++ R     
Sbjct: 77  QMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQA 136

Query: 245 -SGQPIKYDGAAHALCEIIKLEGFRALYRGVTANM 278
            +G   +Y     A   I + EG R L++G + N+
Sbjct: 137 RAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNV 171


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.145    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,580,817
Number of Sequences: 62578
Number of extensions: 333853
Number of successful extensions: 665
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 649
Number of HSP's gapped (non-prelim): 5
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)