Query 021461
Match_columns 312
No_of_seqs 280 out of 939
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:28:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.7 6.9E-18 2.4E-22 126.7 5.2 55 203-260 6-60 (63)
2 1gnf_A Transcription factor GA 99.7 6.8E-18 2.3E-22 119.5 4.5 43 204-249 4-46 (46)
3 2vut_I AREA, nitrogen regulato 99.7 1E-17 3.5E-22 117.0 3.6 41 205-248 2-42 (43)
4 4gat_A Nitrogen regulatory pro 99.7 2.8E-17 9.6E-22 124.5 4.1 53 204-259 9-61 (66)
5 2kae_A GATA-type transcription 99.5 1.4E-15 4.8E-20 116.6 2.7 46 204-251 8-53 (71)
6 4hc9_A Trans-acting T-cell-spe 99.5 5.3E-15 1.8E-19 122.8 4.9 55 204-261 59-113 (115)
7 4hc9_A Trans-acting T-cell-spe 99.4 3.8E-13 1.3E-17 111.6 5.8 48 204-254 5-52 (115)
8 3ogk_Q JAZ1 incomplete degron 97.9 4.3E-06 1.5E-10 50.4 1.4 22 138-160 1-22 (22)
9 3ogl_Q JAZ1 incomplete degron 97.5 4.1E-05 1.4E-09 45.5 2.1 18 136-153 4-21 (21)
10 2yrk_A Zinc finger homeobox pr 62.1 0.48 1.6E-05 34.4 -2.8 42 222-263 7-48 (55)
11 1pft_A TFIIB, PFTFIIBN; N-term 58.5 1.9 6.5E-05 29.6 -0.2 33 204-241 5-37 (50)
12 1dl6_A Transcription factor II 48.1 5.7 0.00019 28.4 0.9 33 204-241 11-43 (58)
13 3cw2_K Translation initiation 42.7 8.7 0.0003 32.3 1.4 30 205-237 104-133 (139)
14 2f1l_A 16S rRNA processing pro 39.2 6.3 0.00022 34.4 0.0 11 17-27 7-17 (187)
15 2d74_B Translation initiation 36.9 9.5 0.00033 32.5 0.8 30 205-237 105-134 (148)
16 1nee_A EIF-2-beta, probable tr 36.4 9.2 0.00031 32.2 0.6 29 205-236 103-131 (138)
17 1k81_A EIF-2-beta, probable tr 36.1 4.8 0.00016 26.3 -1.0 30 206-238 2-31 (36)
18 2owa_A Arfgap-like finger doma 32.0 31 0.0011 28.9 3.1 37 204-244 36-72 (138)
19 3h0g_L DNA-directed RNA polyme 31.1 14 0.00047 27.3 0.7 39 198-243 15-53 (63)
20 2jrb_A ORF 1 protein; RNA bind 30.9 36 0.0012 26.7 3.1 25 74-100 46-70 (88)
21 3cng_A Nudix hydrolase; struct 30.7 14 0.00048 30.8 0.8 32 204-237 3-34 (189)
22 2crr_A Stromal membrane-associ 30.3 37 0.0013 28.4 3.3 37 204-244 29-65 (141)
23 1zm8_A Nuclease, endonuclease; 30.1 11 0.00037 34.3 0.0 12 16-27 2-13 (259)
24 2zjr_Z 50S ribosomal protein L 29.9 8.8 0.0003 27.9 -0.5 23 204-237 30-52 (60)
25 2crw_A ARF GAP 3, ADP-ribosyla 29.8 35 0.0012 29.0 3.1 37 204-244 29-65 (149)
26 2ds5_A CLPX, ATP-dependent CLP 29.2 29 0.00098 24.4 2.1 31 205-237 12-42 (51)
27 2e29_A ATP-dependent RNA helic 29.0 18 0.00061 28.3 1.1 29 75-104 54-82 (92)
28 2iqj_A Stromal membrane-associ 28.9 35 0.0012 28.3 2.9 37 204-244 27-63 (134)
29 2ctu_A Zinc finger protein 483 28.8 21 0.00071 23.9 1.3 40 204-246 18-57 (73)
30 1ovx_A ATP-dependent CLP prote 27.8 29 0.001 25.8 2.0 32 205-238 19-50 (67)
31 2r51_A Vacuolar protein sortin 27.0 20 0.00069 34.2 1.3 22 16-37 3-26 (340)
32 3v2d_5 50S ribosomal protein L 26.2 10 0.00035 27.6 -0.7 22 204-236 30-51 (60)
33 2olm_A Nucleoporin-like protei 25.5 38 0.0013 28.3 2.6 36 204-243 25-60 (140)
34 3k7a_M Transcription initiatio 24.5 23 0.0008 33.2 1.2 33 204-240 21-54 (345)
35 2lvu_A Zinc finger and BTB dom 30.2 16 0.00055 19.5 0.0 17 229-245 3-19 (26)
36 2g2k_A EIF-5, eukaryotic trans 24.3 13 0.00045 32.4 -0.5 31 205-237 97-128 (170)
37 2k48_A Nucleoprotein; viral pr 22.9 55 0.0019 26.5 2.9 15 15-29 1-15 (107)
38 2p57_A GTPase-activating prote 22.6 40 0.0014 28.5 2.1 37 204-244 37-73 (144)
39 3soo_A LINE-1 type transposase 22.6 64 0.0022 25.2 3.2 25 73-99 45-69 (88)
40 2b0o_E UPLC1; arfgap, structur 22.4 53 0.0018 29.3 3.1 36 204-243 42-77 (301)
41 1twf_L ABC10-alpha, DNA-direct 22.3 17 0.00058 27.2 -0.2 29 201-236 25-53 (70)
42 3sub_A ADP-ribosylation factor 22.3 59 0.002 28.1 3.2 37 204-244 22-58 (163)
43 1qyp_A RNA polymerase II; tran 21.9 8.3 0.00028 27.1 -1.9 37 204-240 15-55 (57)
44 3dwd_A ADP-ribosylation factor 21.7 61 0.0021 27.5 3.1 37 204-244 38-74 (147)
45 3cmi_A Peroxiredoxin HYR1; thi 21.3 22 0.00076 28.5 0.3 18 16-33 2-19 (171)
46 2ivd_A PPO, PPOX, protoporphyr 21.2 19 0.00065 33.7 -0.1 12 16-27 4-15 (478)
47 2k1p_A Zinc finger RAN-binding 20.7 36 0.0012 21.6 1.1 24 203-236 5-28 (33)
48 3o47_A ADP-ribosylation factor 20.6 43 0.0015 30.6 2.1 37 204-244 37-73 (329)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.71 E-value=6.9e-18 Score=126.71 Aligned_cols=55 Identities=29% Similarity=0.531 Sum_probs=47.0
Q ss_pred CCcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCCCCCccCcccccccccc
Q 021461 203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHE 260 (312)
Q Consensus 203 ~~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r~~~~~~~~~~~~~~~ 260 (312)
....|+||+++ .||+||+||+|+ +|||||||+|++++++|+++.....|..+.+.
T Consensus 6 ~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk 60 (63)
T 3dfx_A 6 AGTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRK 60 (63)
T ss_dssp TTCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred CCCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCC
Confidence 36899999995 699999999996 99999999999999999998877666665544
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.70 E-value=6.8e-18 Score=119.50 Aligned_cols=43 Identities=44% Similarity=0.832 Sum_probs=39.8
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCCCCCcc
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 249 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r~~~~ 249 (312)
...|+||+++ .||+||+||+|. +|||||||||++++++||++|
T Consensus 4 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 4 ARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp SCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 5789999995 699999999996 999999999999999999875
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.69 E-value=1e-17 Score=117.05 Aligned_cols=41 Identities=44% Similarity=0.878 Sum_probs=38.1
Q ss_pred cccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCCCCCc
Q 021461 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248 (312)
Q Consensus 205 ~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r~~~ 248 (312)
..|++|+++ .||+||+||+|+ +|||||||+|++++++|+++
T Consensus 2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~ 42 (43)
T 2vut_I 2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS 42 (43)
T ss_dssp CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence 579999994 799999999996 99999999999999999975
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.66 E-value=2.8e-17 Score=124.45 Aligned_cols=53 Identities=36% Similarity=0.648 Sum_probs=46.5
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCCCCCccCccccccccc
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQH 259 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r~~~~~~~~~~~~~~ 259 (312)
...|+||+++ .||+||+||+|. +|||||||||++++++|+++.....|..+.+
T Consensus 9 ~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R 61 (66)
T 4gat_A 9 PTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNR 61 (66)
T ss_dssp SCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCC
T ss_pred CCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhcccccccccc
Confidence 6899999994 699999999996 9999999999999999999887766655444
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.54 E-value=1.4e-15 Score=116.61 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=39.1
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCCCCCccCc
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGA 251 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r~~~~~~ 251 (312)
...|+||+++ .||+||+||.+..+|||||||||++++++|++....
T Consensus 8 ~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~ 53 (71)
T 2kae_A 8 SFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVN 53 (71)
T ss_dssp CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHH
T ss_pred CCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccch
Confidence 6899999995 699999954444499999999999999999976654
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.52 E-value=5.3e-15 Score=122.81 Aligned_cols=55 Identities=29% Similarity=0.550 Sum_probs=47.8
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCCCCCccCccccccccccc
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL 261 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r~~~~~~~~~~~~~~~~ 261 (312)
...|+||+++ .||+||+||+| .+|||||||||+++++.|+++.....|..+.+.+
T Consensus 59 ~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~ 113 (115)
T 4hc9_A 59 GTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM 113 (115)
T ss_dssp TCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred cccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhccccc
Confidence 5799999995 69999999999 8999999999999999999998887777766654
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.37 E-value=3.8e-13 Score=111.65 Aligned_cols=48 Identities=44% Similarity=0.775 Sum_probs=41.8
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCCCCCccCcccc
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNI 254 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r~~~~~~~~~ 254 (312)
.+.|.|||+ +.||+||+||+| .+|||||||||+.++..|++.+.+...
T Consensus 5 ~~~C~~Cg~--~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR~ 52 (115)
T 4hc9_A 5 GRECVNCGA--TSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRRL 52 (115)
T ss_dssp -CCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCCC
T ss_pred CCCCCCCCC--ccCCcceECCCC-CCcCcchhhhhhhcccccccccccccc
Confidence 689999999 469999999999 799999999999999999987665433
No 8
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=97.86 E-value=4.3e-06 Score=50.39 Aligned_cols=22 Identities=59% Similarity=0.709 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhhhhccccccccc....
Q 021461 138 RIASLVRFREKRKERSFEKKIRY.... 160 (312)
Q Consensus 138 R~aSL~Rf~eKRk~R~~~kki~Y.... 160 (312)
|++||+||+||||+|..++ .+|
T Consensus 1 Rk~SLqRFleKRk~R~~~~-~PY.... 22 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK-APYxxxx 26 (26)
T ss_pred CchhHHHHHHHHHHHhhcc-CCC....
Confidence 6899999999999998877 576
No 9
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=97.51 E-value=4.1e-05 Score=45.54 Aligned_cols=18 Identities=61% Similarity=0.695 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhhcc.....
Q 021461 136 SQRIASLVRFREKRKERS..... 153 (312)
Q Consensus 136 ~~R~aSL~Rf~eKRk~R~..... 153 (312)
.+|++||+||+||||+|.
T Consensus 4 ~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 4 IARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred hhHHHHHHHHHHHhhccC.....
Confidence 479999999999999974
No 10
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=62.08 E-value=0.48 Score=34.36 Aligned_cols=42 Identities=19% Similarity=0.464 Sum_probs=27.6
Q ss_pred cCCCCCcccchHHHHHHHhcCCCCCCccCcccccccccccCC
Q 021461 222 RGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELET 263 (312)
Q Consensus 222 ~GP~G~~~LCNACGl~~~~~~~~r~~~~~~~~~~~~~~~~~~ 263 (312)
.+|+||++-|.-||..|.-+-.+++--=..+.|...+..+..
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~~ 48 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSARLSIRDHIFSKQHISKVRETVGS 48 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTCS
T ss_pred CCCCCCCccccccCcccccccchhhhhccHHHHHHHHHHHHh
Confidence 578999999999999998776666622222345544444433
No 11
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=58.46 E-value=1.9 Score=29.56 Aligned_cols=33 Identities=18% Similarity=0.613 Sum_probs=22.9
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhc
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANK 241 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~ 241 (312)
...|-+|+. +++-..--.| ...|..||+-|..+
T Consensus 5 ~~~CP~C~~----~~l~~d~~~g-elvC~~CG~v~~e~ 37 (50)
T 1pft_A 5 QKVCPACES----AELIYDPERG-EIVCAKCGYVIEEN 37 (50)
T ss_dssp CCSCTTTSC----CCEEEETTTT-EEEESSSCCBCCCC
T ss_pred cEeCcCCCC----cceEEcCCCC-eEECcccCCccccc
Confidence 467999986 3444444445 79999999988554
No 12
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=48.14 E-value=5.7 Score=28.45 Aligned_cols=33 Identities=21% Similarity=0.452 Sum_probs=24.9
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhc
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANK 241 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~ 241 (312)
...|..|+. ++.....-.| .+.|..||+-+..+
T Consensus 11 ~~~Cp~C~~----~~lv~D~~~g-e~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 11 RVTCPNHPD----AILVEDYRAG-DMICPECGLVVGDR 43 (58)
T ss_dssp CCSBTTBSS----SCCEECSSSC-CEECTTTCCEECCS
T ss_pred cccCcCCCC----CceeEeCCCC-eEEeCCCCCEEecc
Confidence 457999986 4466665666 79999999988664
No 13
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=42.74 E-value=8.7 Score=32.34 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=19.7
Q ss_pred cccccccccCCCCCccccCCCCCcccchHHHHH
Q 021461 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (312)
Q Consensus 205 ~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~ 237 (312)
-.|..|+-+. |-+-+.+- ---.-|+|||-.
T Consensus 104 VlC~~C~sPd--T~l~k~~r-~~~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLD--TILKKEKK-SWYIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSC--CCSCSSCS-TTTSSCCC----
T ss_pred eECCCCCCcC--cEEEEeCC-eEEEEecCCCCC
Confidence 6899999975 87888652 234789999964
No 14
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=39.18 E-value=6.3 Score=34.38 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q 021461 17 TEEHDVAQTPI 27 (312)
Q Consensus 17 ~~~~~~~~~p~ 27 (312)
|||||||++||
T Consensus 7 ~~~~~~~~~~~ 17 (187)
T 2f1l_A 7 HHHHHHMPTPA 17 (187)
T ss_dssp -----------
T ss_pred cccccCCCCCC
Confidence 45667888885
No 15
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=36.93 E-value=9.5 Score=32.48 Aligned_cols=30 Identities=33% Similarity=0.641 Sum_probs=20.8
Q ss_pred cccccccccCCCCCccccCCCCCcccchHHHHH
Q 021461 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (312)
Q Consensus 205 ~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~ 237 (312)
-.|..|+.+. |-+-+.+- ---.-|+|||-.
T Consensus 105 VlC~~C~sPd--T~L~k~~r-~~~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGSPD--TKIIKRDR-FHFLKCEACGAE 134 (148)
T ss_dssp SSCSSSCCTT--CCCCBSSS-SBCCCCSSSCCC
T ss_pred EECCCCCCcC--cEEEEeCC-EEEEEecCCCCC
Confidence 4799999864 77777542 224679999854
No 16
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=36.43 E-value=9.2 Score=32.16 Aligned_cols=29 Identities=34% Similarity=0.733 Sum_probs=20.8
Q ss_pred cccccccccCCCCCccccCCCCCcccchHHHH
Q 021461 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (312)
Q Consensus 205 ~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl 236 (312)
-.|..|+-+. |-+-+.+- ---.-|+|||-
T Consensus 103 VlC~~C~sPd--T~l~k~~r-~~~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNRPD--TRIIREGR-ISLLKCEACGA 131 (138)
T ss_dssp HHHTCCSSCS--SCCEEETT-TTEEECSTTSC
T ss_pred EECCCCCCcC--cEEEEcCC-eEEEEccCCCC
Confidence 4799999874 77777652 22477999984
No 17
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=36.13 E-value=4.8 Score=26.34 Aligned_cols=30 Identities=33% Similarity=0.794 Sum_probs=19.7
Q ss_pred ccccccccCCCCCccccCCCCCcccchHHHHHH
Q 021461 206 ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW 238 (312)
Q Consensus 206 ~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~ 238 (312)
.|..|+-++ |-+-+++-.- -.-|+|||-..
T Consensus 2 lC~~C~~pe--T~l~~~~~~~-~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPD--TKIIKEGRVH-LLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCE--EEEEEETTEE-EEEEETTTEEE
T ss_pred CCcCCCCCC--cEEEEeCCcE-EEEhhcCCCcc
Confidence 488999874 7777754111 24499999643
No 18
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=31.98 E-value=31 Score=28.86 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=31.7
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCC
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~ 244 (312)
...|..||.. -|.|=.=..| -.||-.|.-..+.-|++
T Consensus 36 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 36 NRTCFDCESR---NPTWLSLSFA-VFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTTCTT
T ss_pred CCcCCCCcCC---CCCeEEecCC-EEEhHhhhHHHhCCCCC
Confidence 4799999984 6999999999 89999999888877654
No 19
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=31.08 E-value=14 Score=27.28 Aligned_cols=39 Identities=26% Similarity=0.478 Sum_probs=24.2
Q ss_pred CCCCCCCcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCC
Q 021461 198 APPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (312)
Q Consensus 198 ~~~~~~~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~ 243 (312)
..++.....|..||..- ... .+...-|.-||-+.-.|.+
T Consensus 15 ~~~~~v~Y~C~~Cg~~~--~l~-----~~~~iRC~~CG~RILyK~R 53 (63)
T 3h0g_L 15 PRPATMIYLCADCGARN--TIQ-----AKEVIRCRECGHRVMYKMR 53 (63)
T ss_dssp ----CCCCBCSSSCCBC--CCC-----SSSCCCCSSSCCCCCBCCC
T ss_pred CCCCCeEEECCCCCCee--ecC-----CCCceECCCCCcEEEEEec
Confidence 33445679999999842 322 2346889999977665544
No 20
>2jrb_A ORF 1 protein; RNA binding protein; NMR {Mus musculus}
Probab=30.91 E-value=36 Score=26.67 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=19.4
Q ss_pred CccceEEecceEEEeCCCChhHHHHHH
Q 021461 74 TSELTVAYEGEVYVFPAVTPHKVQALL 100 (312)
Q Consensus 74 t~QLTIfY~G~V~VFDdVp~eKaq~Im 100 (312)
.+-|+++|+|++..|.| .+|+++.+
T Consensus 46 PakLsf~~eGeiksF~d--kqkl~efi 70 (88)
T 2jrb_A 46 PAKLSITIDGETKVFHD--KTKFTQYL 70 (88)
T ss_dssp TTEEEEESSSCEEEESS--HHHHHHHH
T ss_pred ceeeEEEECCeEeccCC--HHHHHHHH
Confidence 56899999999999994 55655543
No 21
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=30.74 E-value=14 Score=30.79 Aligned_cols=32 Identities=25% Similarity=0.689 Sum_probs=23.7
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHH
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~ 237 (312)
.+.|..||.. .+.....|..+.+..|-.||.+
T Consensus 3 ~~~C~~CG~~--~~~~~~~G~~~~~~~~~~~~~~ 34 (189)
T 3cng_A 3 MKFCSQCGGE--VILRIPEGDTLPRYICPKCHTI 34 (189)
T ss_dssp CCBCTTTCCB--CEEECCTTCSSCEEEETTTTEE
T ss_pred cccCchhCCc--cccccccCCCCcceECCCCCCc
Confidence 4689999984 3455556677777899999943
No 22
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.31 E-value=37 Score=28.43 Aligned_cols=37 Identities=22% Similarity=0.464 Sum_probs=31.4
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCC
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~ 244 (312)
...|..||.. -|.|=.=..| -.||-.|.-..+.-|++
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (141)
T 2crr_A 29 NKYCADCEAK---GPRWASWNIG-VFICIRCAGIHRNLGVH 65 (141)
T ss_dssp GSSCSSSCCS---SCCSEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCCCC---CCCeEEeccC-eEEhhhhhHhHhcCCCC
Confidence 4799999984 6999988899 89999998888887753
No 23
>1zm8_A Nuclease, endonuclease; NUCA, metal dependent, hydrolase; 1.90A {Anabaena SP} PDB: 2o3b_A*
Probab=30.10 E-value=11 Score=34.30 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q 021461 16 DTEEHDVAQTPI 27 (312)
Q Consensus 16 ~~~~~~~~~~p~ 27 (312)
.||||||||.||
T Consensus 2 ~~~~~~~~~~~~ 13 (259)
T 1zm8_A 2 AHHHHHHMQVPP 13 (259)
T ss_dssp ------------
T ss_pred CccccccccCCC
Confidence 478899999996
No 24
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=29.88 E-value=8.8 Score=27.89 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=17.3
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHH
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~ 237 (312)
...|.+||.. -=+..+|-.||.|
T Consensus 30 l~~c~~cG~~-----------~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 30 LTECPQCHGK-----------KLSHHICPNCGYY 52 (60)
T ss_dssp CEECTTTCCE-----------ECTTBCCTTTCBS
T ss_pred ceECCCCCCE-----------eCCceEcCCCCcC
Confidence 5789999973 2236899999943
No 25
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.82 E-value=35 Score=28.95 Aligned_cols=37 Identities=24% Similarity=0.516 Sum_probs=31.8
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCC
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~ 244 (312)
...|..||.. -|.|=.=..| -.||-.|.-..+.-|++
T Consensus 29 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 29 NKVCFDCGAK---NPSWASITYG-VFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TSBCSSSCCB---SCCCEETTTT-EECCHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCcEEeccC-EEEchhcchhhccCCCC
Confidence 5899999984 7999998899 89999999888887764
No 26
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=29.24 E-value=29 Score=24.43 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=22.4
Q ss_pred cccccccccCCCCCccccCCCCCcccchHHHHH
Q 021461 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLM 237 (312)
Q Consensus 205 ~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~ 237 (312)
.+|+=||.+.......=.|| | ...|+-|=..
T Consensus 12 ~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~~ 42 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 42 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECS-S-CEEEHHHHHH
T ss_pred cEecCCCCCHHHhcccCCCC-C-CEehHHHHHH
Confidence 68999998755555555676 4 5899999643
No 27
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=28.99 E-value=18 Score=28.27 Aligned_cols=29 Identities=10% Similarity=0.038 Sum_probs=25.2
Q ss_pred ccceEEecceEEEeCCCChhHHHHHHHHhc
Q 021461 75 SELTVAYEGEVYVFPAVTPHKVQALLLLLG 104 (312)
Q Consensus 75 ~QLTIfY~G~V~VFDdVp~eKaq~Im~la~ 104 (312)
..|||.=++.-.||| ||.|.+++|+....
T Consensus 54 ~~m~l~~d~~GavFD-vP~e~~~~~~~~~~ 82 (92)
T 2e29_A 54 TRMCLLKGNMGVCFD-VPTTESERLQAEWH 82 (92)
T ss_dssp EEEEECTTSSEEEEE-EEHHHHHHHHHHCC
T ss_pred CeEEEecCCCEEEEE-CcHHHHHHHHhhCC
Confidence 478888899999999 99999999997653
No 28
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=28.92 E-value=35 Score=28.30 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=31.8
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCC
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~ 244 (312)
...|..||.. -|.|=.=..| -.||-.|.-..+.-|++
T Consensus 27 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 27 NKFCADCQSK---GPRWASWNIG-VFICIRCAGIHRNLGVH 63 (134)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCcCcCC---CCCeEEecCC-EEEhHhhhHHHhcCCCC
Confidence 5899999984 6999998999 89999999888887753
No 29
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.79 E-value=21 Score=23.91 Aligned_cols=40 Identities=23% Similarity=0.481 Sum_probs=27.3
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCCCC
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRD 246 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~r~ 246 (312)
...|..|+..-.....+++ .....|..||..|.....++.
T Consensus 18 ~~~C~~C~k~f~~~~~l~~---~~~~~C~~C~~~f~~~~~l~~ 57 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR---RKTPMCEKCRKDSCQEAALNK 57 (73)
T ss_dssp EEECSSSCCEEECCCCCCC---SSSCCCHHHHHTCSCCCSSCC
T ss_pred CeeCCcccchhCCHHHhCc---CCCCCCCCCChhhcCHHHHHH
Confidence 5789999975333334444 446899999999977655443
No 30
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=27.76 E-value=29 Score=25.84 Aligned_cols=32 Identities=25% Similarity=0.606 Sum_probs=23.0
Q ss_pred cccccccccCCCCCccccCCCCCcccchHHHHHH
Q 021461 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW 238 (312)
Q Consensus 205 ~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~ 238 (312)
.+|+=||.+.......=.|| | ...|+-|=..-
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~c 50 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDLC 50 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-C-CChhHHHHHHH
Confidence 68999998754455555676 4 58999996544
No 31
>2r51_A Vacuolar protein sorting-associated protein 26B; retromer, fibronectin III, arrestin domain, membrane, phosphorylation, protein transport; 2.10A {Mus musculus} PDB: 3lh9_A 3lh8_A 3lha_A
Probab=26.98 E-value=20 Score=34.15 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCCcc--cCCCCCCC
Q 021461 16 DTEEHDVAQTPIPI--QNGSKQGD 37 (312)
Q Consensus 16 ~~~~~~~~~~p~~~--~~~~~~~~ 37 (312)
.|||||||-+|.=| .+|+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (340)
T 2r51_A 3 SHHHHHHMGQSVEVEILLNDAESR 26 (340)
T ss_dssp ----------CEEEEEEETTTTTS
T ss_pred ccccccccCCCceEEEEECCCCcc
Confidence 37788889888644 44555544
No 32
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=26.22 E-value=10 Score=27.56 Aligned_cols=22 Identities=32% Similarity=0.794 Sum_probs=16.7
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHH
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl 236 (312)
...|.+||.. -=+..+|-.||.
T Consensus 30 l~~c~~cGe~-----------~~~H~vc~~CG~ 51 (60)
T 3v2d_5 30 LVPCPECKAM-----------KPPHTVCPECGY 51 (60)
T ss_dssp CEECTTTCCE-----------ECTTSCCTTTCE
T ss_pred eeECCCCCCe-----------ecceEEcCCCCc
Confidence 5789999973 223689999993
No 33
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=25.52 E-value=38 Score=28.29 Aligned_cols=36 Identities=19% Similarity=0.435 Sum_probs=30.4
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCC
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~ 243 (312)
...|..||.. -|.|=.=..| -.||-.|.-..+.-|+
T Consensus 25 N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 25 NRKCFDCDQR---GPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGSCTTTCSS---CCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCcCCCCCCC---CCCceeeccC-EEEchhccchhccCCC
Confidence 5899999984 7999998899 8999999887766554
No 34
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=24.53 E-value=23 Score=33.16 Aligned_cols=33 Identities=27% Similarity=0.734 Sum_probs=21.6
Q ss_pred CcccccccccCCCCC-ccccCCCCCcccchHHHHHHHh
Q 021461 204 SRICQHCGISEKLTP-AMRRGPAGPRTLCNACGLMWAN 240 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp-~wR~GP~G~~~LCNACGl~~~~ 240 (312)
...|.+||.. +| .-.+--.| .+.|..||+-..-
T Consensus 21 ~~~Cp~Cg~~---~~~iv~D~~~G-~~vC~~CG~Vl~e 54 (345)
T 3k7a_M 21 VLTCPECKVY---PPKIVERFSEG-DVVCALCGLVLSD 54 (345)
T ss_dssp CCCCSTTCCS---CCCCCCCSSSC-SCCCSSSCCCCCC
T ss_pred CCcCcCCCCC---CCceEEECCCC-CEecCCCCeEccc
Confidence 4578888873 22 33344456 7889888887754
No 35
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.16 E-value=16 Score=19.50 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=12.2
Q ss_pred ccchHHHHHHHhcCCCC
Q 021461 229 TLCNACGLMWANKGTLR 245 (312)
Q Consensus 229 ~LCNACGl~~~~~~~~r 245 (312)
..|+-||..|.....++
T Consensus 3 ~~C~~C~k~f~~~~~l~ 19 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQLA 19 (26)
Confidence 46889998887765443
No 36
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=24.27 E-value=13 Score=32.35 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=20.4
Q ss_pred cccccccccCCCCCccccCCCC-CcccchHHHHH
Q 021461 205 RICQHCGISEKLTPAMRRGPAG-PRTLCNACGLM 237 (312)
Q Consensus 205 ~~C~~Cg~~~~~Tp~wR~GP~G-~~~LCNACGl~ 237 (312)
-.|..|+-++ |-+-+..-.+ --.-|+|||-.
T Consensus 97 VlC~~C~sPd--T~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 97 VLCPECENPE--TDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp HSCTTTSSSC--EEEEEETTTTEEEEEETTTCCC
T ss_pred EECCCCCCCc--cEEEEecCCCEEEEEccccCCc
Confidence 4799999874 7777732112 13669999854
No 37
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=22.94 E-value=55 Score=26.50 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=10.6
Q ss_pred cCCCCCCCCCCCCcc
Q 021461 15 IDTEEHDVAQTPIPI 29 (312)
Q Consensus 15 ~~~~~~~~~~~p~~~ 29 (312)
+|||||+--++|-|.
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (107)
T 2k48_A 1 MHHHHHHGKPIPNPL 15 (107)
T ss_dssp CCCCCCCCCCCCCSC
T ss_pred CCccccCCCCCCCcc
Confidence 367777777788665
No 38
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=22.64 E-value=40 Score=28.53 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=31.5
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCC
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~ 244 (312)
...|..||.. -|.|=.=..| -.||-.|.-..+.-|+.
T Consensus 37 N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 73 (144)
T 2p57_A 37 NKACFDCGAK---NPSWASITYG-VFLCIDCSGVHRSLGVH 73 (144)
T ss_dssp GGBCTTTCCB---SCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCCCcCC---CCCeEEeccC-EEEhhhchHHHcCCCCC
Confidence 5899999984 6999888889 89999999888877754
No 39
>3soo_A LINE-1 type transposase domain-containing protein; alpha/beta protein, structural genomics, joint center for ST genomics, JCSG; 2.73A {Homo sapiens} PDB: 2lr6_A
Probab=22.60 E-value=64 Score=25.20 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=20.0
Q ss_pred CCccceEEecceEEEeCCCChhHHHHH
Q 021461 73 RTSELTVAYEGEVYVFPAVTPHKVQAL 99 (312)
Q Consensus 73 ~t~QLTIfY~G~V~VFDdVp~eKaq~I 99 (312)
=.+.|+++|+|++..|+| .+|.++.
T Consensus 45 YPakLsf~~eGeiksF~d--kqkl~eF 69 (88)
T 3soo_A 45 CEVXLAFXCDGEIXTFSD--LQSLRXF 69 (88)
T ss_dssp CCCCEEEECSSSEEEESS--HHHHHHH
T ss_pred ccceEEEEecCceeccCC--HHHccch
Confidence 357899999999999995 4566664
No 40
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=22.45 E-value=53 Score=29.34 Aligned_cols=36 Identities=22% Similarity=0.482 Sum_probs=30.2
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCC
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~ 243 (312)
...|..||.. -|.|-.-..| ..+|-.|--..+.-|+
T Consensus 42 n~~c~dc~~~---~p~w~s~~~g-~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 42 NSQCCDCGAA---DPTWLSTNLG-VLTCIQCSGVHRELGV 77 (301)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCcCCCCCCC---CCCeEEeecC-eEEcHHHHHHHHhhCC
Confidence 5899999984 6999999999 8999999776666554
No 41
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=22.33 E-value=17 Score=27.16 Aligned_cols=29 Identities=24% Similarity=0.630 Sum_probs=19.7
Q ss_pred CCCCcccccccccCCCCCccccCCCCCcccchHHHH
Q 021461 201 ESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (312)
Q Consensus 201 ~~~~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl 236 (312)
......|..||.. .... .+...-|..||-
T Consensus 25 ~~v~Y~C~~CG~~--~e~~-----~~d~irCp~CG~ 53 (70)
T 1twf_L 25 ATLKYICAECSSK--LSLS-----RTDAVRCKDCGH 53 (70)
T ss_dssp CCCCEECSSSCCE--ECCC-----TTSTTCCSSSCC
T ss_pred ceEEEECCCCCCc--ceeC-----CCCCccCCCCCc
Confidence 4457899999984 1222 223468999998
No 42
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=22.33 E-value=59 Score=28.12 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=31.1
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCC
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~ 244 (312)
...|..||.. -|.|=.=..| -.||-.|.-..+.-|++
T Consensus 22 N~~CaDCga~---~P~WaS~nlG-vflCi~CSGiHR~LG~h 58 (163)
T 3sub_A 22 NNKCFDCGIS---NPDWVSVNHG-IFLCINCSGVHRSLGVH 58 (163)
T ss_dssp GGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHTCTT
T ss_pred CCccccCCCC---CCCeEEecCC-eeEHHhhhHHhcCCCCC
Confidence 4799999984 7999999999 89999998777776653
No 43
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=21.90 E-value=8.3 Score=27.06 Aligned_cols=37 Identities=24% Similarity=0.607 Sum_probs=25.0
Q ss_pred CcccccccccCCC--CCccccCCCCCc--ccchHHHHHHHh
Q 021461 204 SRICQHCGISEKL--TPAMRRGPAGPR--TLCNACGLMWAN 240 (312)
Q Consensus 204 ~~~C~~Cg~~~~~--Tp~wR~GP~G~~--~LCNACGl~~~~ 240 (312)
...|..||-.... +-+||...++.. ..|-.||..|+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 5689999974211 347887766632 579889988753
No 44
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=21.68 E-value=61 Score=27.54 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=31.5
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCC
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~ 244 (312)
...|..||.. -|.|=.=..| -.||-.|.-..+.-|+.
T Consensus 38 N~~CaDCga~---~P~WaS~nlG-vfiC~~CSgiHR~LG~h 74 (147)
T 3dwd_A 38 NNVCFECGAF---NPQWVSVTYG-IWICLECSGRHRGLGVH 74 (147)
T ss_dssp TTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred CCccCCCCCC---CCCeEEeccc-EeEhHhhChHHhcCCCC
Confidence 4799999984 6999998999 89999999888876653
No 45
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=21.25 E-value=22 Score=28.48 Aligned_cols=18 Identities=6% Similarity=-0.031 Sum_probs=6.0
Q ss_pred CCCCCCCCCCCCcccCCC
Q 021461 16 DTEEHDVAQTPIPIQNGS 33 (312)
Q Consensus 16 ~~~~~~~~~~p~~~~~~~ 33 (312)
.||||+||...|.+.+-+
T Consensus 2 ~~~~~~~~~~~~~f~l~d 19 (171)
T 3cmi_A 2 GHHHHHHMSEFYKLAPVD 19 (171)
T ss_dssp --------CGGGGCCCBB
T ss_pred CcccccchhheeeeEEEc
Confidence 477788887776665443
No 46
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=21.21 E-value=19 Score=33.71 Aligned_cols=12 Identities=8% Similarity=0.105 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q 021461 16 DTEEHDVAQTPI 27 (312)
Q Consensus 16 ~~~~~~~~~~p~ 27 (312)
||||||||+.+.
T Consensus 4 ~~~~~~~~~~~~ 15 (478)
T 2ivd_A 4 HHHHHHHMPRTT 15 (478)
T ss_dssp ------------
T ss_pred cccccccCCCCC
Confidence 567778888774
No 47
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=20.74 E-value=36 Score=21.56 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=17.3
Q ss_pred CCcccccccccCCCCCccccCCCCCcccchHHHH
Q 021461 203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236 (312)
Q Consensus 203 ~~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl 236 (312)
..|.|..|+.. .-.|| +-||.||.
T Consensus 5 gDW~C~~C~~~---Nfa~R-------~~C~~C~~ 28 (33)
T 2k1p_A 5 NDWQCKTCSNV---NWARR-------SECNMCNT 28 (33)
T ss_dssp SSCBCSSSCCB---CCTTC-------SBCSSSCC
T ss_pred CCcccCCCCCc---ccccc-------ccccccCC
Confidence 37999999973 44444 68888874
No 48
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=20.60 E-value=43 Score=30.62 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=31.2
Q ss_pred CcccccccccCCCCCccccCCCCCcccchHHHHHHHhcCCC
Q 021461 204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244 (312)
Q Consensus 204 ~~~C~~Cg~~~~~Tp~wR~GP~G~~~LCNACGl~~~~~~~~ 244 (312)
...|..||.. -|.|=.=..| -.||-.|.-..+.-|+.
T Consensus 37 n~~c~dc~~~---~~~~~~~~~~-~~~c~~c~~~hr~~~~~ 73 (329)
T 3o47_A 37 NNVCFECGAF---NPQWVSVTYG-IWICLECSGRHRGLGVH 73 (329)
T ss_dssp TTBCTTTCCB---SCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCcCCCCCCC---CCCeEEecCC-EEEChhhhhhhcccCCC
Confidence 4799999984 7899888888 89999999888876653
Done!