BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>021462
MARLVRPLMQWPKLRQQCCHRAPLNYFFSSFLRRTPIATEETTSLSFSATSAPSSHGNVH
NRLRALKPRNAPPLNSHEDDSATDSDSDDKKSRNQKKREARRAVRWGMQIAAFSTAQIKR
ILSVASLDEDVLDAIMLVKRLGPDVKEGKRRQFNYIGKLLREVEPELMEGLIQATKVGDH
ATLQALAAANMQNIQDDNNQQSKESEDEKEKEEEEEEEELQEYVNIATRWYDGLINKDIS
ITNEVYSVQSVDFDRQELRKLVREVLSVQERQAIADGNEGEQGQVDSKIVHAKKSLTRFL
LTLAKGMSVHTI

High Scoring Gene Products

Symbol, full name Information P value
AT4G24175 protein from Arabidopsis thaliana 6.5e-51
SO_4079
UPF0307 protein SO_4079
protein from Shewanella oneidensis MR-1 0.00042
SO_4079
conserved hypothetical protein
protein from Shewanella oneidensis MR-1 0.00042

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  021462
        (312 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006519 - symbol:AT4G24175 "AT4G24175" speci...   529  6.5e-51   1
UNIPROTKB|Q8EA30 - symbol:SO_4079 "UPF0307 protein SO_407...    98  0.00042   2
TIGR_CMR|SO_4079 - symbol:SO_4079 "conserved hypothetical...    98  0.00042   2


>TAIR|locus:505006519 [details] [associations]
            symbol:AT4G24175 "AT4G24175" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002687 GenomeReviews:CT486007_GR
            Gene3D:1.10.60.30 InterPro:IPR023153 InterPro:IPR006839
            Pfam:PF04751 EMBL:AY072445 EMBL:AY087691 EMBL:BT003416
            IPI:IPI00545163 RefSeq:NP_567696.1 UniGene:At.32370
            ProteinModelPortal:Q8VY50 PaxDb:Q8VY50 PRIDE:Q8VY50
            EnsemblPlants:AT4G24175.1 GeneID:828518 KEGG:ath:AT4G24175
            TAIR:At4g24175 eggNOG:NOG259573 HOGENOM:HOG000240682
            InParanoid:Q8VY50 OMA:ARRAVKW PhylomeDB:Q8VY50
            ProtClustDB:CLSN2689580 Genevestigator:Q8VY50 Uniprot:Q8VY50
        Length = 306

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 129/314 (41%), Positives = 169/314 (53%)

Query:     1 MARLVRPLMQWPKLRQQCCHR-APLNYFFSSFLRRTPIXXXXXXXXXXXXXXXXXXHGNV 59
             MA+L+RP+ Q   L  QC H    L Y FS  L   P                       
Sbjct:     1 MAQLIRPIRQ---LSPQCNHHFRNLRYLFSKKLPNPP----SSIPTLLLFSSFSTERSPP 53

Query:    60 HNRLRALKPRNAPP--LNSHEXXXXXXXXXXXXXXXXXXXREARRAVRWGMQIAAFSTAQ 117
               R+R   P    P  + + E                   R+ARRAV+WGM++A+FS  Q
Sbjct:    54 RRRIRPAPPEALKPTVIVAEEDGDNDGYESDSLRSRNQRKRDARRAVKWGMELASFSGDQ 113

Query:   118 IKRILSVASLDEDVLDAIMLVKRLGPDVKEGKRRQFNYIGKLLREVEPELMEGLIQATKV 177
             +K+IL  ASL E+V DA+ML KRLG DV+EGKRR FNYIGKLLREVEP+LM+ LI ATK 
Sbjct:   114 VKQILKAASLGEEVYDALMLAKRLGSDVREGKRRHFNYIGKLLREVEPDLMDTLINATKQ 173

Query:   178 GDHATLQALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVNIATRWYDGLINK 237
             GDH+TLQ L                                    Y  +A RW+DGLI++
Sbjct:   174 GDHSTLQTLISSAKDVADDVGDSYDDDTETESEDEEEGSDE----YTAMAARWFDGLISQ 229

Query:   238 DISITNEVYSVQSVDFDRQELRKLVREVLSVQERQAIADGNEGEQGQVDSKIVHAKKSLT 297
             ++ +T EVYS+QSVDFDRQELRKLVR+V  V E++      E +Q +V++ +V A+KSL 
Sbjct:   230 NVELTKEVYSLQSVDFDRQELRKLVRKVQLVHEQRK--GTTEEKQKEVEAALVTAEKSLN 287

Query:   298 RFLLTLAKGMSVHT 311
             +FL ++AK   VH+
Sbjct:   288 QFLCSMAK--QVHS 299


>UNIPROTKB|Q8EA30 [details] [associations]
            symbol:SO_4079 "UPF0307 protein SO_4079" species:211586
            "Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            [GO:0008150 "biological_process" evidence=ND] EMBL:AE014299
            GenomeReviews:AE014299_GR eggNOG:COG3028 KO:K09889 OMA:KAANKPP
            ProtClustDB:PRK05255 Gene3D:1.10.60.30 HAMAP:MF_00765
            InterPro:IPR023153 InterPro:IPR006839 Pfam:PF04751
            PIRSF:PIRSF016183 RefSeq:NP_719609.1 ProteinModelPortal:Q8EA30
            GeneID:1171697 KEGG:son:SO_4079 PATRIC:23527808
            HOGENOM:HOG000013875 Uniprot:Q8EA30
        Length = 177

 Score = 98 (39.6 bits), Expect = 0.00042, Sum P(2) = 0.00042
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query:    98 REARRAVRWGMQIAAFSTAQIKRILSVASLDEDVLDAIMLVKRLGPDVKEGKRRQFNYIG 157
             R+   A + GM++ + S  Q+ +I     LDE + D+I    ++ P   E  RR   YIG
Sbjct:    28 RDCEAAQKVGMELVSLSKTQLDKI----ELDEHLYDSIQQAHKIKPKT-EAYRRHMQYIG 82

Query:   158 KLLREVEPE 166
             KL+R V+ E
Sbjct:    83 KLMRNVDIE 91

 Score = 40 (19.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
 Identities = 8/11 (72%), Positives = 10/11 (90%)

Query:   254 DRQELRKLVRE 264
             DRQ+LR LVR+
Sbjct:   140 DRQKLRTLVRQ 150


>TIGR_CMR|SO_4079 [details] [associations]
            symbol:SO_4079 "conserved hypothetical protein"
            species:211586 "Shewanella oneidensis MR-1" [GO:0008150
            "biological_process" evidence=ND] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
            EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG3028 KO:K09889
            OMA:KAANKPP ProtClustDB:PRK05255 Gene3D:1.10.60.30 HAMAP:MF_00765
            InterPro:IPR023153 InterPro:IPR006839 Pfam:PF04751
            PIRSF:PIRSF016183 RefSeq:NP_719609.1 ProteinModelPortal:Q8EA30
            GeneID:1171697 KEGG:son:SO_4079 PATRIC:23527808
            HOGENOM:HOG000013875 Uniprot:Q8EA30
        Length = 177

 Score = 98 (39.6 bits), Expect = 0.00042, Sum P(2) = 0.00042
 Identities = 24/69 (34%), Positives = 37/69 (53%)

Query:    98 REARRAVRWGMQIAAFSTAQIKRILSVASLDEDVLDAIMLVKRLGPDVKEGKRRQFNYIG 157
             R+   A + GM++ + S  Q+ +I     LDE + D+I    ++ P   E  RR   YIG
Sbjct:    28 RDCEAAQKVGMELVSLSKTQLDKI----ELDEHLYDSIQQAHKIKPKT-EAYRRHMQYIG 82

Query:   158 KLLREVEPE 166
             KL+R V+ E
Sbjct:    83 KLMRNVDIE 91

 Score = 40 (19.1 bits), Expect = 0.00042, Sum P(2) = 0.00042
 Identities = 8/11 (72%), Positives = 10/11 (90%)

Query:   254 DRQELRKLVRE 264
             DRQ+LR LVR+
Sbjct:   140 DRQKLRTLVRQ 150


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      312       239   0.00092  113 3  11 22  0.38    33
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  168 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  16.74u 0.10s 16.84t   Elapsed:  00:00:28
  Total cpu time:  16.74u 0.10s 16.84t   Elapsed:  00:00:29
  Start:  Thu May  9 20:01:09 2013   End:  Thu May  9 20:01:38 2013

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