Query 021462
Match_columns 312
No_of_seqs 121 out of 353
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 03:08:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05255 hypothetical protein; 100.0 7.5E-52 1.6E-56 365.8 19.4 159 86-304 12-170 (171)
2 PF04751 DUF615: Protein of un 100.0 3E-51 6.6E-56 357.1 15.1 156 87-302 2-157 (157)
3 COG3028 Uncharacterized protei 100.0 1.2E-50 2.5E-55 358.5 18.8 171 72-306 12-182 (187)
4 PF07609 DUF1572: Protein of u 46.2 28 0.00061 31.5 3.9 72 90-166 82-155 (163)
5 PRK12557 H(2)-dependent methyl 45.2 2.1E+02 0.0044 28.3 10.1 159 92-298 171-341 (342)
6 PF02084 Bindin: Bindin; Inte 33.2 2.8E+02 0.0062 26.8 8.5 28 149-176 133-161 (238)
7 PF08134 cIII: cIII protein fa 22.9 88 0.0019 22.8 2.5 16 255-270 23-38 (44)
8 PRK07764 DNA polymerase III su 22.0 8.3E+02 0.018 27.3 10.9 22 162-183 245-266 (824)
9 PF10098 DUF2336: Uncharacteri 21.7 2.8E+02 0.0061 25.5 6.3 63 111-176 200-262 (262)
10 TIGR03454 partition_RepB plasm 21.6 1.3E+02 0.0027 30.0 4.2 50 105-162 182-232 (325)
No 1
>PRK05255 hypothetical protein; Provisional
Probab=100.00 E-value=7.5e-52 Score=365.79 Aligned_cols=159 Identities=29% Similarity=0.416 Sum_probs=148.3
Q ss_pred CCCCcCChhHHHHHHHHHHHHHHHHhcCCHHHHHHhcccCCCCHHHHHHHHHHHhcCCCChhhhhhHHHHHHHHHhhcCH
Q 021462 86 DSDDKKSRNQKKREARRAVRWGMQIAAFSTAQIKRILSVASLDEDVLDAIMLVKRLGPDVKEGKRRQFNYIGKLLREVEP 165 (312)
Q Consensus 86 d~~~~~SKSq~KREa~~lq~LG~eL~~Ls~~QLkril~~~pL~eeL~dAI~~akRi~~~~~earRRQ~qYIGKLLR~~D~ 165 (312)
++..++||||+||+|+++|+||++|++||+.||++| ||||+|++||.+|++|++ ++|+|||+||||||||..|+
T Consensus 12 ~~~~~~SKSq~KRe~~alq~LG~~L~~Ls~~ql~~l----pL~e~L~~Ai~ea~ri~~--~eA~RRqlqyIGKLmR~~d~ 85 (171)
T PRK05255 12 DEIIWVSKSQIKRDAEALQDLGEELVELSKDQLAKL----PLDEDLRDAILEAQRITS--HEARRRQLQYIGKLMRNEDV 85 (171)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHHHhCCHHHHhcC----CCCHHHHHHHHHHhhhcc--chHHHHHHHHHHHHHhhCCH
Confidence 455678999999999999999999999999999999 999999999999999975 89999999999999999999
Q ss_pred HHHHHHHHHhhccChhHHHHHHHhhhhhccccccccccchhhHHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHH
Q 021462 166 ELMEGLIQATKVGDHATLQALAAANMQNIQDDNNQQSKESEDEKEKEEEEEEEELQEYVNIATRWYDGLINKDISITNEV 245 (312)
Q Consensus 166 E~I~~al~~~k~~~~~~lqa~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~e~~~~~~h~lErWRDrLI~~d~~a~~Ev 245 (312)
|+|.++|+.+++++.. .++.||++|+|||+||++|++++++|
T Consensus 86 e~I~~al~~~~~~~~~--------------------------------------~~~~~h~lE~wRdrLi~~~d~al~e~ 127 (171)
T PRK05255 86 EPIRAALDKLKNKHNQ--------------------------------------ETARFHKLERWRDRLLAEGDDALTEF 127 (171)
T ss_pred HHHHHHHHHHhchhHH--------------------------------------HHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999987664 38889999999999999999999999
Q ss_pred HhhcCChhhHHHHHHHHHHHHHHHHHhhhhcCCCCccCCCcccchhhHHHHHHHHHHHh
Q 021462 246 YSVQSVDFDRQELRKLVREVLSVQERQAIADGNEGEQGQVDSKIVHAKKSLTRFLLTLA 304 (312)
Q Consensus 246 ~~~~~p~~DRQeLRqLVR~A~keqe~k~~k~~~ee~~~~~~~k~pkA~R~LFrfLr~l~ 304 (312)
++. ||++|||+||||||+|+++++. +|||+++|+||+||++++
T Consensus 128 ~~~-~P~~DrQ~LRqLiR~A~kE~~~---------------~kppk~~R~LF~~Lr~~~ 170 (171)
T PRK05255 128 LEE-YPDADRQQLRQLIRNAKKEKAQ---------------NKPPKSFRELFQYLRELI 170 (171)
T ss_pred HHH-CchhhHHHHHHHHHHHHHHHHc---------------CCCchhHHHHHHHHHHHh
Confidence 997 6999999999999999998653 478999999999999975
No 2
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=100.00 E-value=3e-51 Score=357.11 Aligned_cols=156 Identities=33% Similarity=0.498 Sum_probs=122.2
Q ss_pred CCCcCChhHHHHHHHHHHHHHHHHhcCCHHHHHHhcccCCCCHHHHHHHHHHHhcCCCChhhhhhHHHHHHHHHhhcCHH
Q 021462 87 SDDKKSRNQKKREARRAVRWGMQIAAFSTAQIKRILSVASLDEDVLDAIMLVKRLGPDVKEGKRRQFNYIGKLLREVEPE 166 (312)
Q Consensus 87 ~~~~~SKSq~KREa~~lq~LG~eL~~Ls~~QLkril~~~pL~eeL~dAI~~akRi~~~~~earRRQ~qYIGKLLR~~D~E 166 (312)
++.++||||+||+|+++|+||++|++||+.||++| |||++|++||++|++|+ +++|+|||+||||||||++|+|
T Consensus 2 e~~~~SKSq~KRe~~~lq~Lg~~L~~L~~~ql~~l----pL~e~l~~Ai~~a~ri~--~~~arrRQ~qyIGKLmR~~d~e 75 (157)
T PF04751_consen 2 EEERPSKSQLKREMHALQDLGEELVELSPKQLAKL----PLPEELRDAIMEARRIT--SHEARRRQLQYIGKLMREEDPE 75 (157)
T ss_dssp --------------HHHHHHHHHHTTS-HHHHTTS-------HHHHHHHHHGGG----SHHHHHHHHHHHHHHGGGS-HH
T ss_pred CCCcCChhHHHHHHHHHHHHHHHHHhCCHHHHhhC----CCCHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHhCCHH
Confidence 45789999999999999999999999999999999 99999999999999996 4999999999999999999999
Q ss_pred HHHHHHHHhhccChhHHHHHHHhhhhhccccccccccchhhHHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHH
Q 021462 167 LMEGLIQATKVGDHATLQALAAANMQNIQDDNNQQSKESEDEKEKEEEEEEEELQEYVNIATRWYDGLINKDISITNEVY 246 (312)
Q Consensus 167 ~I~~al~~~k~~~~~~lqa~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~e~~~~~~h~lErWRDrLI~~d~~a~~Ev~ 246 (312)
+|.++|+.+++++.. .+..||++|+|||+||++|++++++|+
T Consensus 76 ~I~~al~~~~~~~~~--------------------------------------~~~~~h~lE~wRdrLi~~~~~al~e~~ 117 (157)
T PF04751_consen 76 AIRAALDALKNKSQQ--------------------------------------ETARFHRLERWRDRLIADDDSALTEFL 117 (157)
T ss_dssp HHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred HHHHHHHHHHcccHH--------------------------------------HHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 999999999976443 488999999999999999999999999
Q ss_pred hhcCChhhHHHHHHHHHHHHHHHHHhhhhcCCCCccCCCcccchhhHHHHHHHHHH
Q 021462 247 SVQSVDFDRQELRKLVREVLSVQERQAIADGNEGEQGQVDSKIVHAKKSLTRFLLT 302 (312)
Q Consensus 247 ~~~~p~~DRQeLRqLVR~A~keqe~k~~k~~~ee~~~~~~~k~pkA~R~LFrfLr~ 302 (312)
+. ||++|+|+||||||+|+++++. +|||+++|+||+|||+
T Consensus 118 ~~-~p~~D~Q~LRqLiR~a~ke~~~---------------~k~~ka~R~Lfr~Lre 157 (157)
T PF04751_consen 118 AE-YPDADRQQLRQLIRNARKEREA---------------NKPPKAYRELFRYLRE 157 (157)
T ss_dssp HH-STTS-HHHHHHHHHHHHHHHHT---------------T---HHHHHHHHHHHH
T ss_pred HH-CChhhHHHHHHHHHHHHHHHHc---------------CCCchhHHHHHHHHhC
Confidence 97 6999999999999999998763 4689999999999986
No 3
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.2e-50 Score=358.54 Aligned_cols=171 Identities=27% Similarity=0.398 Sum_probs=155.4
Q ss_pred CCCCCCCCCCCCCCCCCCcCChhHHHHHHHHHHHHHHHHhcCCHHHHHHhcccCCCCHHHHHHHHHHHhcCCCChhhhhh
Q 021462 72 PPLNSHEDDSATDSDSDDKKSRNQKKREARRAVRWGMQIAAFSTAQIKRILSVASLDEDVLDAIMLVKRLGPDVKEGKRR 151 (312)
Q Consensus 72 ~p~~~~~~~~~~~~d~~~~~SKSq~KREa~~lq~LG~eL~~Ls~~QLkril~~~pL~eeL~dAI~~akRi~~~~~earRR 151 (312)
.|.+.+++ |.++..++||||+||+|.++|+||++|++|++..|++| ||||.|++||.+|+||++ ++||||
T Consensus 12 ~~~~~~~d----ed~e~iwvSKSqiKRd~~aLq~LGe~L~~L~~~~L~Ki----PL~E~L~~Ai~~aqri~~--~~arrR 81 (187)
T COG3028 12 VPGDDEED----EDDEIIWVSKSQIKRDAEALQDLGEELVDLTKAALAKI----PLDEDLLEAIELAQRIKS--EIARRR 81 (187)
T ss_pred Cccccccc----cccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhC----CCChHHHHHHHHHHHHHH--HHHHHH
Confidence 35555442 23566789999999999999999999999999999999 999999999999999985 779999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHhhccChhHHHHHHHhhhhhccccccccccchhhHHhhhhHHHHHHHHHHHHHHHHHH
Q 021462 152 QFNYIGKLLREVEPELMEGLIQATKVGDHATLQALAAANMQNIQDDNNQQSKESEDEKEKEEEEEEEELQEYVNIATRWY 231 (312)
Q Consensus 152 Q~qYIGKLLR~~D~E~I~~al~~~k~~~~~~lqa~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~e~~~~~~h~lErWR 231 (312)
|+||||||||..|+|+|+++|+.+.+.+.+ .++.+|.+|+||
T Consensus 82 QlQyIGKlmR~~DvepI~~~Ldkl~~~~~q--------------------------------------~~a~lHklE~~R 123 (187)
T COG3028 82 QLQYIGKLMRDRDVEPIRAALDKLRNRHNQ--------------------------------------QVALLHKLEQLR 123 (187)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHhhhHHH--------------------------------------HHHHHHHHHHHH
Confidence 999999999999999999999999987664 388999999999
Q ss_pred HHhhcCCcchHHHHHhhcCChhhHHHHHHHHHHHHHHHHHhhhhcCCCCccCCCcccchhhHHHHHHHHHHHhhh
Q 021462 232 DGLINKDISITNEVYSVQSVDFDRQELRKLVREVLSVQERQAIADGNEGEQGQVDSKIVHAKKSLTRFLLTLAKG 306 (312)
Q Consensus 232 DrLI~~d~~a~~Ev~~~~~p~~DRQeLRqLVR~A~keqe~k~~k~~~ee~~~~~~~k~pkA~R~LFrfLr~l~~~ 306 (312)
|+||++||+++++|+.. ||++|||+||+|||||++|++. +|||+|+|+||+||++++..
T Consensus 124 drLia~GD~Alt~~l~~-~P~aDrq~LR~LvRna~kE~a~---------------NKPPks~ReifQ~lk~l~~~ 182 (187)
T COG3028 124 DRLIAEGDGALTEFLNQ-YPDADRQQLRTLIRNAKKEQAQ---------------NKPPKSFREIFQYLKELMEN 182 (187)
T ss_pred HHHHhcCchHHHHHHHH-CCcccHHHHHHHHHHHHHHHhc---------------CCCcHHHHHHHHHHHHHHHh
Confidence 99999999999999996 7999999999999999998764 57999999999999998754
No 4
>PF07609 DUF1572: Protein of unknown function (DUF1572); InterPro: IPR011466 This protein represents proteins with unknown function found in several diverse bacteria.
Probab=46.23 E-value=28 Score=31.47 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=48.1
Q ss_pred cCChhHHHHHHHH-HHHHHHHHhcCCHHHHHHhcccCCCCHHHHHHH-HHHHhcCCCChhhhhhHHHHHHHHHhhcCHH
Q 021462 90 KKSRNQKKREARR-AVRWGMQIAAFSTAQIKRILSVASLDEDVLDAI-MLVKRLGPDVKEGKRRQFNYIGKLLREVEPE 166 (312)
Q Consensus 90 ~~SKSq~KREa~~-lq~LG~eL~~Ls~~QLkril~~~pL~eeL~dAI-~~akRi~~~~~earRRQ~qYIGKLLR~~D~E 166 (312)
..||.++-..-.. .+-+-..|..|++++|.+.+..-.-+-.+.+|| ..+--..- | ==|+.||||+|++.+..
T Consensus 82 ~~sk~eLl~~~~~~w~~l~~aL~~L~~edL~~~i~Ir~~~~sv~~ai~r~~~H~sy--H---vGQIvy~~Kll~~~~w~ 155 (163)
T PF07609_consen 82 FVSKEELLARWEKGWQVLFDALESLTEEDLLKTIYIRGEEHSVLEAINRQLAHYSY--H---VGQIVYLRKLLKGDDWQ 155 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCHHHhCCeeEecCCceeHHHHHHHHHHHHhc--c---HHHHHHHHHHhcCCcCc
Confidence 4577776443332 234456788999999998765555566788888 33344443 2 34999999999987654
No 5
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=45.25 E-value=2.1e+02 Score=28.31 Aligned_cols=159 Identities=13% Similarity=0.125 Sum_probs=82.6
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCCHHHHHHh------cccCCCCHHHHHHHHHHHhcCCCChhhhhhHH----HHHHHHHh
Q 021462 92 SRNQKKREARRAVRWGMQIAAFSTAQIKRI------LSVASLDEDVLDAIMLVKRLGPDVKEGKRRQF----NYIGKLLR 161 (312)
Q Consensus 92 SKSq~KREa~~lq~LG~eL~~Ls~~QLkri------l~~~pL~eeL~dAI~~akRi~~~~~earRRQ~----qYIGKLLR 161 (312)
+..++.+-..-+..+|....-+++.....+ + .+-.=.-+.+++.++.+++.+.+.-.+.|. +=+.+||.
T Consensus 171 ~~e~~e~v~~LL~a~G~~v~~~~~g~~~~vk~~~n~l-~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a~l~~ 249 (342)
T PRK12557 171 TEEQIEKCVELAESIGKEPYVVPADVVSAVADMGSLV-TAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMASLVE 249 (342)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777788887777887665551 0 000112456777888888754333333332 33446666
Q ss_pred hcCHHHHHHHHHHhhccChhHHHHHHHh-hhhhccccccccccchhhHHhhhhHHHHHHHHHHHHHHHHHHHHhhcCC-c
Q 021462 162 EVEPELMEGLIQATKVGDHATLQALAAA-NMQNIQDDNNQQSKESEDEKEKEEEEEEEELQEYVNIATRWYDGLINKD-I 239 (312)
Q Consensus 162 ~~D~E~I~~al~~~k~~~~~~lqa~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~e~~~~~~h~lErWRDrLI~~d-~ 239 (312)
+-+.+-|..+|+-=- |.+- ..|.. -+..+.....+..+|...+.+..+. .
T Consensus 250 ~~~~~~~~~~~~~~~---------~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (342)
T PRK12557 250 TSGVDGLLKALNPEL---------LLRSASSMHL-------------------LEKQKDLDAALEILENLDEDLLKEIEE 301 (342)
T ss_pred HhChHHHHHhcCHHH---------HhhhHhhCCc-------------------chhhhhHHHHHHHHHHHHHHHhhcccc
Confidence 555555544433210 0000 00110 0112335778999999999987652 2
Q ss_pred chHHHHHhhcCChhhHHHHHHHHHHHHHHHHHhhhhcCCCCccCCCcccchhhHHHHHH
Q 021462 240 SITNEVYSVQSVDFDRQELRKLVREVLSVQERQAIADGNEGEQGQVDSKIVHAKKSLTR 298 (312)
Q Consensus 240 ~a~~Ev~~~~~p~~DRQeLRqLVR~A~keqe~k~~k~~~ee~~~~~~~k~pkA~R~LFr 298 (312)
+-++.++-+ -++.=+.+++.||=.+ ..+ +...++.|+||.
T Consensus 302 ~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~--------------~~~~~~~~~~~~ 341 (342)
T PRK12557 302 AEIKPTTLV-AAQALVKEIKTLIGGR----AAE--------------GAIRRSMRKLFE 341 (342)
T ss_pred Cccccceec-ChHHHHHHHHHHhccc----hhH--------------HHHHHHHHHHhc
Confidence 233333333 2444455555555221 111 345688888885
No 6
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=33.17 E-value=2.8e+02 Score=26.80 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHhhc-CHHHHHHHHHHhh
Q 021462 149 KRRQFNYIGKLLREV-EPELMEGLIQATK 176 (312)
Q Consensus 149 rRRQ~qYIGKLLR~~-D~E~I~~al~~~k 176 (312)
+=||+..=-.||-.+ |||-=+++|.++.
T Consensus 133 LLRhLRHHSNLLAnIgdP~VreqVLsAMq 161 (238)
T PF02084_consen 133 LLRHLRHHSNLLANIGDPEVREQVLSAMQ 161 (238)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHh
Confidence 467777778888887 7887777666654
No 7
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=22.90 E-value=88 Score=22.81 Aligned_cols=16 Identities=25% Similarity=0.464 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 021462 255 RQELRKLVREVLSVQE 270 (312)
Q Consensus 255 RQeLRqLVR~A~keqe 270 (312)
...+|+|||.|.+.-|
T Consensus 23 skr~rrLIRaa~k~le 38 (44)
T PF08134_consen 23 SKRIRRLIRAARKQLE 38 (44)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578999999998554
No 8
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=22.03 E-value=8.3e+02 Score=27.33 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=15.1
Q ss_pred hcCHHHHHHHHHHhhccChhHH
Q 021462 162 EVEPELMEGLIQATKVGDHATL 183 (312)
Q Consensus 162 ~~D~E~I~~al~~~k~~~~~~l 183 (312)
..+.+.|..+|+++.+++...+
T Consensus 245 ~~~~~~I~~lidAL~~~D~a~a 266 (824)
T PRK07764 245 VTDSALIDEAVDALAAGDGAAL 266 (824)
T ss_pred CCCHHHHHHHHHHHHcCCHHHH
Confidence 3356677788888887776543
No 9
>PF10098 DUF2336: Uncharacterized protein conserved in bacteria (DUF2336); InterPro: IPR019285 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.66 E-value=2.8e+02 Score=25.47 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=42.1
Q ss_pred hcCCHHHHHHhcccCCCCHHHHHHHHHHHhcCCCChhhhhhHHHHHHHHHhhcCHHHHHHHHHHhh
Q 021462 111 AAFSTAQIKRILSVASLDEDVLDAIMLVKRLGPDVKEGKRRQFNYIGKLLREVEPELMEGLIQATK 176 (312)
Q Consensus 111 ~~Ls~~QLkril~~~pL~eeL~dAI~~akRi~~~~~earRRQ~qYIGKLLR~~D~E~I~~al~~~k 176 (312)
..-++..|.-+++++.|+..++.+|..+..... ..-.....-+..+.+.++++..+.+|..|+
T Consensus 200 ~d~~~~~L~~l~kaaGL~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~y~~L~~~~A~~~L~~wr 262 (262)
T PF10098_consen 200 ADGGGEALAALCKAAGLPWATFPAFLAALAPWR---RISRGDLEEALALYDRLSPDAAQRVLRFWR 262 (262)
T ss_pred hCCCchHHHHHHHHcCCCHHHHHHHHHHHhhhc---ccCcchHHHHHHHHHcCCHHHHHHHHHHhC
Confidence 344555666677888999998888877765432 122223333777778888888888887764
No 10
>TIGR03454 partition_RepB plasmid partitioning protein RepB. Members of this family are the RepB protein involved in replicon partitioning. RepB is found, in general, as part of a repABC operon in plasmids and small chromosomes, separate from the main chromosome, in various bacteria. This model describes a rather narrow clade of proteins; it should be noted that additional homologs scoring below the trusted cutoff have very similar functions, although they may be named differently.
Probab=21.65 E-value=1.3e+02 Score=29.98 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=39.6
Q ss_pred HHHHHHhcCCHHHHHHhcccC-CCCHHHHHHHHHHHhcCCCChhhhhhHHHHHHHHHhh
Q 021462 105 RWGMQIAAFSTAQIKRILSVA-SLDEDVLDAIMLVKRLGPDVKEGKRRQFNYIGKLLRE 162 (312)
Q Consensus 105 ~LG~eL~~Ls~~QLkril~~~-pL~eeL~dAI~~akRi~~~~~earRRQ~qYIGKLLR~ 162 (312)
.++.. ..++...+.+++..+ .||++|+++|..+..| |++|=+. ++++|..
T Consensus 182 ~ia~~-Lg~~ks~vSr~lsl~~~lP~~li~~ig~ap~~------Gr~rw~~-La~~l~~ 232 (325)
T TIGR03454 182 TIMAA-LSVDKTELSRMISVARRIPEELIEAIGPAPGI------GRPRWME-LAELLEH 232 (325)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHhCCHHHHHHhcccccc------cHHHHHH-HHHHHhc
Confidence 34555 589999999999988 7999999999988877 5566554 7788876
Done!