Query 021462
Match_columns 312
No_of_seqs 121 out of 353
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 04:29:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021462.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021462hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p0t_A UPF0307 protein pspto_4 100.0 6.6E-53 2.3E-57 372.7 15.8 159 88-306 13-171 (176)
2 3nr7_A DNA-binding protein H-N 30.8 1.9E+02 0.0064 22.5 7.6 62 158-247 19-80 (86)
3 2lz1_A Nuclear factor erythroi 22.4 1.1E+02 0.0037 24.5 4.4 56 89-144 19-74 (90)
4 2kz5_A Transcription factor NF 21.8 86 0.003 25.1 3.8 54 89-142 19-72 (91)
5 2nz7_A NOD1, caspase recruitme 20.7 1.4E+02 0.0047 23.4 4.8 61 227-309 29-91 (98)
6 1skn_P DNA-binding domain of S 20.4 1.1E+02 0.0038 24.5 4.1 35 107-141 33-67 (92)
7 2es4_D Lipase chaperone; prote 17.7 51 0.0017 31.3 1.9 15 162-176 152-166 (332)
8 2dkz_A Hypothetical protein LO 15.7 1E+02 0.0035 24.3 2.9 47 109-170 14-60 (84)
9 1wwu_A Hypothetical protein FL 14.1 1.6E+02 0.0054 23.8 3.7 31 107-141 51-83 (99)
10 2e8m_A Epidermal growth factor 14.0 1.5E+02 0.0051 23.9 3.5 32 107-142 61-93 (99)
No 1
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=100.00 E-value=6.6e-53 Score=372.67 Aligned_cols=159 Identities=23% Similarity=0.358 Sum_probs=137.5
Q ss_pred CCcCChhHHHHHHHHHHHHHHHHhcCCHHHHHHhcccCCCCHHHHHHHHHHHhcCCCChhhhhhHHHHHHHHHhhcCHHH
Q 021462 88 DDKKSRNQKKREARRAVRWGMQIAAFSTAQIKRILSVASLDEDVLDAIMLVKRLGPDVKEGKRRQFNYIGKLLREVEPEL 167 (312)
Q Consensus 88 ~~~~SKSq~KREa~~lq~LG~eL~~Ls~~QLkril~~~pL~eeL~dAI~~akRi~~~~~earRRQ~qYIGKLLR~~D~E~ 167 (312)
++++|||++||+|+++|+||++|++||++||++| ||||+|++||++|++|++ ++|+|||+||||||||++|+|+
T Consensus 13 ~~~~SKSq~KRe~~~lq~LG~eL~~Ls~~ql~kl----pL~e~L~~Ai~~a~ri~~--~earRRQlqyIGKLmR~~D~e~ 86 (176)
T 2p0t_A 13 DGEKSKTQVKRELHALVDLGERLTTLKADVLAKL----PLTDALRKALAEAPKHTA--NIARKRHILFIGKLMRDQDQEA 86 (176)
T ss_dssp ------------CHHHHHHHHHHTTSCHHHHTTS----CCCHHHHHHHHHGGGCCS--HHHHHHHHHHHHHHGGGSCHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhCCHHHHhcC----CCCHHHHHHHHHHhhccc--cHHHHHHHHHHHHHHhcCCHHH
Confidence 3567999999999999999999999999999999 999999999999999985 8899999999999999999999
Q ss_pred HHHHHHHhhccChhHHHHHHHhhhhhccccccccccchhhHHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHh
Q 021462 168 MEGLIQATKVGDHATLQALAAANMQNIQDDNNQQSKESEDEKEKEEEEEEEELQEYVNIATRWYDGLINKDISITNEVYS 247 (312)
Q Consensus 168 I~~al~~~k~~~~~~lqa~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~e~~~~~~h~lErWRDrLI~~d~~a~~Ev~~ 247 (312)
|+++|+.+++++.. .++.||++|+|||+||++|++++++|++
T Consensus 87 I~~al~~~~~~~~~--------------------------------------~~~~~h~lE~wRdrLi~~gd~al~e~~~ 128 (176)
T 2p0t_A 87 ILVLLDQLDASTRQ--------------------------------------YNERFHNLERWRDRLIAGDDADLEKFVI 128 (176)
T ss_dssp HHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHhhcccHH--------------------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999987553 4899999999999999999999999999
Q ss_pred hcCChhhHHHHHHHHHHHHHHHHHhhhhcCCCCccCCCcccchhhHHHHHHHHHHHhhh
Q 021462 248 VQSVDFDRQELRKLVREVLSVQERQAIADGNEGEQGQVDSKIVHAKKSLTRFLLTLAKG 306 (312)
Q Consensus 248 ~~~p~~DRQeLRqLVR~A~keqe~k~~k~~~ee~~~~~~~k~pkA~R~LFrfLr~l~~~ 306 (312)
. ||++|||+||||||+|+++++. +|||+++|+||+||+++++.
T Consensus 129 ~-~P~~DrQ~LRqLiR~A~kE~~~---------------~kppka~ReLFqyLr~~~~~ 171 (176)
T 2p0t_A 129 E-YPDADRQQLRSLIRQAQHEVAR---------------NKPPATSRKIFKYIRELDEL 171 (176)
T ss_dssp H-STTSCHHHHHHHHHHHHHHHHT---------------TCCCHHHHHHHHHHHHHHTC
T ss_pred H-CchhhHHHHHHHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHhh
Confidence 6 6999999999999999998753 46899999999999998654
No 2
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=30.85 E-value=1.9e+02 Score=22.48 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=41.0
Q ss_pred HHHhhcCHHHHHHHHHHhhccChhHHHHHHHhhhhhccccccccccchhhHHhhhhHHHHHHHHHHHHHHHHHHHHhhcC
Q 021462 158 KLLREVEPELMEGLIQATKVGDHATLQALAAANMQNIQDDNNQQSKESEDEKEKEEEEEEEELQEYVNIATRWYDGLINK 237 (312)
Q Consensus 158 KLLR~~D~E~I~~al~~~k~~~~~~lqa~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~e~~~~~~h~lErWRDrLI~~ 237 (312)
-..|+.+.+.++.++..+...- ++-.++.+.......+....++.|+.-|..+
T Consensus 19 A~arel~le~Lee~leKl~~Vv---------------------------eERree~~~~~~~~~er~~Kl~~~~e~l~~~ 71 (86)
T 3nr7_A 19 AQARESTLETLEEMLEKLEVVV---------------------------NERREEESAAAAEVEERTRKLQQYREMLIAD 71 (86)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3458889999988888876321 1112223333444556777899999999999
Q ss_pred CcchHHHHHh
Q 021462 238 DISITNEVYS 247 (312)
Q Consensus 238 d~~a~~Ev~~ 247 (312)
|+++- ++.+
T Consensus 72 GI~~e-eL~~ 80 (86)
T 3nr7_A 72 GIDPN-ELLN 80 (86)
T ss_dssp CCCHH-HHHH
T ss_pred CCCHH-HHHh
Confidence 99873 4543
No 3
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=22.36 E-value=1.1e+02 Score=24.48 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=41.2
Q ss_pred CcCChhHHHHHHHHHHHHHHHHhcCCHHHHHHhcccCCCCHHHHHHHHHHHhcCCC
Q 021462 89 DKKSRNQKKREARRAVRWGMQIAAFSTAQIKRILSVASLDEDVLDAIMLVKRLGPD 144 (312)
Q Consensus 89 ~~~SKSq~KREa~~lq~LG~eL~~Ls~~QLkril~~~pL~eeL~dAI~~akRi~~~ 144 (312)
...||-+..-.+-.+===.++++.||-.++..+|....|+++-+..|...+|=+.+
T Consensus 19 ~~~srDE~ra~~~~LPFsvdqIvnLpv~eFn~lL~~~~Lt~~Ql~lIrdiRRRgKN 74 (90)
T 2lz1_A 19 AHLTRDELRAKALHIPFPVEKIINLPVVDFNEMMSKEQFNEAQLALIRDIRRRGKN 74 (90)
T ss_dssp CCCCHHHHHHHHHTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHSCS
T ss_pred hccchhHHHHHHcCCCCCHHHHHHCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhhh
Confidence 34577663322211111258999999999999999999999999999988887654
No 4
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=21.78 E-value=86 Score=25.07 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=39.5
Q ss_pred CcCChhHHHHHHHHHHHHHHHHhcCCHHHHHHhcccCCCCHHHHHHHHHHHhcC
Q 021462 89 DKKSRNQKKREARRAVRWGMQIAAFSTAQIKRILSVASLDEDVLDAIMLVKRLG 142 (312)
Q Consensus 89 ~~~SKSq~KREa~~lq~LG~eL~~Ls~~QLkril~~~pL~eeL~dAI~~akRi~ 142 (312)
.+-||.+..-.+..+===..+|+.||-.++..+|...+|.++-+..|...+|=+
T Consensus 19 ~~~srDE~ra~~l~lPfs~~~Iv~lpv~efn~ll~~~~Ls~~Ql~lIrdiRRRg 72 (91)
T 2kz5_A 19 EAGSRDERRALAMKIPFPTDKIVNLPVDDFNELLARYPLTESQLALVRDIRRRG 72 (91)
T ss_dssp CCCCHHHHHHHHHTCSSCHHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hhhchhHHHHHHhCCCCCHHHHHHCcHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 345665543333333333589999999999999999999999988888877643
No 5
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=20.67 E-value=1.4e+02 Score=23.45 Aligned_cols=61 Identities=18% Similarity=0.170 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCCcchH--HHHHhhcCChhhHHHHHHHHHHHHHHHHHhhhhcCCCCccCCCcccchhhHHHHHHHHHHHh
Q 021462 227 ATRWYDGLINKDISIT--NEVYSVQSVDFDRQELRKLVREVLSVQERQAIADGNEGEQGQVDSKIVHAKKSLTRFLLTLA 304 (312)
Q Consensus 227 lErWRDrLI~~d~~a~--~Ev~~~~~p~~DRQeLRqLVR~A~keqe~k~~k~~~ee~~~~~~~k~pkA~R~LFrfLr~l~ 304 (312)
++...|.|+..+.=-. .++... -..-..+.|+|+..+.. | -+.|++.++.+|++..
T Consensus 29 V~~lLD~LL~~~VL~~ee~~I~~~--~~T~~~kaR~Lld~v~~----K----------------G~~A~~~F~~~L~e~~ 86 (98)
T 2nz7_A 29 TQCLVDNLLKNDYFSAEDAEIVCA--CPTQPDKVRKILDLVQS----K----------------GEEVSEFFLYLLQQLA 86 (98)
T ss_dssp CHHHHHHHHHTTSSCHHHHHHHHT--CCSHHHHHHHHHHHHHH----H----------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHcc--CCCcHHHHHHHHHHHHH----H----------------hHHHHHHHHHHHHHhC
Confidence 5677888887643111 333321 24467899999998863 2 3579999999999987
Q ss_pred hhccc
Q 021462 305 KGMSV 309 (312)
Q Consensus 305 ~~~~~ 309 (312)
+..|.
T Consensus 87 ~~~~~ 91 (98)
T 2nz7_A 87 DAYVD 91 (98)
T ss_dssp HSSGG
T ss_pred ccchh
Confidence 76653
No 6
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=20.43 E-value=1.1e+02 Score=24.52 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=30.8
Q ss_pred HHHHhcCCHHHHHHhcccCCCCHHHHHHHHHHHhc
Q 021462 107 GMQIAAFSTAQIKRILSVASLDEDVLDAIMLVKRL 141 (312)
Q Consensus 107 G~eL~~Ls~~QLkril~~~pL~eeL~dAI~~akRi 141 (312)
..+|+.||-.++..+|....|+++-+..|...+|=
T Consensus 33 ~~eIv~lpv~efn~lLk~~~Ls~~Ql~~ir~~RRR 67 (92)
T 1skn_P 33 AFQISEMSLSELQQVLKNESLSEYQRQLIRKIRRR 67 (92)
T ss_dssp HHHHHHSCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHCcHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999988888776664
No 7
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=17.67 E-value=51 Score=31.30 Aligned_cols=15 Identities=13% Similarity=0.344 Sum_probs=8.8
Q ss_pred hcCHHHHHHHHHHhh
Q 021462 162 EVEPELMEGLIQATK 176 (312)
Q Consensus 162 ~~D~E~I~~al~~~k 176 (312)
..|++.++.+++.+.
T Consensus 152 ~~~~~~l~~~~~qi~ 166 (332)
T 2es4_D 152 KLDPAAMQLALDQRA 166 (332)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 456666666665554
No 8
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.73 E-value=1e+02 Score=24.30 Aligned_cols=47 Identities=21% Similarity=0.495 Sum_probs=37.5
Q ss_pred HHhcCCHHHHHHhcccCCCCHHHHHHHHHHHhcCCCChhhhhhHHHHHHHHHhhcCHHHHHH
Q 021462 109 QIAAFSTAQIKRILSVASLDEDVLDAIMLVKRLGPDVKEGKRRQFNYIGKLLREVEPELMEG 170 (312)
Q Consensus 109 eL~~Ls~~QLkril~~~pL~eeL~dAI~~akRi~~~~~earRRQ~qYIGKLLR~~D~E~I~~ 170 (312)
.|..||..++...||.+.|++++.++.. ..+|- |.+|=++|.|-|..
T Consensus 14 dLs~lSv~EVs~~Lr~igL~e~vv~~F~-~e~ID--------------G~lL~~L~ee~L~e 60 (84)
T 2dkz_A 14 DLSGLSIEEVSKSLRFIGLSEDVISFFV-TEKID--------------GNLLVQLTEEILSE 60 (84)
T ss_dssp CCSSCCHHHHHHHGGGTCCCHHHHHHHH-TTTCC--------------HHHHHHCCHHHHHH
T ss_pred hhhhcCHHHHHHHHHHcCCcHHHHHHHH-HHccc--------------hHHHHhCCHHHHHh
Confidence 3778999999999999999999886654 34453 78888888887654
No 9
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=14.14 E-value=1.6e+02 Score=23.77 Aligned_cols=31 Identities=19% Similarity=0.449 Sum_probs=24.9
Q ss_pred HHHHhcCCHHHHHHhcccCCCCH--HHHHHHHHHHhc
Q 021462 107 GMQIAAFSTAQIKRILSVASLDE--DVLDAIMLVKRL 141 (312)
Q Consensus 107 G~eL~~Ls~~QLkril~~~pL~e--eL~dAI~~akRi 141 (312)
|.+|..|++.+|+.|. + .| .|+-+|...|..
T Consensus 51 GaqLf~Ltk~eL~~vC---g-~EG~RlysqL~~qk~~ 83 (99)
T 1wwu_A 51 GPQLFSLNKEELKKVC---G-EEGVRVYSQLTMQKAF 83 (99)
T ss_dssp HHHHHTCCHHHHHHHH---T-TTHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHC---c-chhHHHHHHHHHHHHH
Confidence 8899999999999996 6 44 477777777765
No 10
>2e8m_A Epidermal growth factor receptor kinase substrate 8; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=14.03 E-value=1.5e+02 Score=23.91 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHhcCCHHHHHHhcccCCCCH-HHHHHHHHHHhcC
Q 021462 107 GMQIAAFSTAQIKRILSVASLDE-DVLDAIMLVKRLG 142 (312)
Q Consensus 107 G~eL~~Ls~~QLkril~~~pL~e-eL~dAI~~akRi~ 142 (312)
|.+|..|++.+|+.|. + +- .|+.+|...|..-
T Consensus 61 GaqLl~Ltk~eL~~vC---g-EG~RlysqL~vqk~~l 93 (99)
T 2e8m_A 61 GAQLFSLNKDELRTVC---P-EGARVYSQITVQKAAL 93 (99)
T ss_dssp HHHHHHCCHHHHHHHC---T-THHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHC---C-chHHHHHHHHHHHHHH
Confidence 8899999999999995 6 33 5888888887753
Done!