BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021463
(312 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3SZZ0|BRX1_BOVIN Ribosome biogenesis protein BRX1 homolog OS=Bos taurus GN=BRIX1
PE=2 SV=1
Length = 353
Score = 263 bits (673), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 133/268 (49%), Positives = 181/268 (67%), Gaps = 16/268 (5%)
Query: 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
G ++NKE++L+ SR INFR RHLM ++ L+PH K D K++ K K +NE+ E+K+C
Sbjct: 54 GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112
Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
+ C++FE +K +DLY+W++ SP+GPS KFLV +HT+ ELK+TGN LK SRPLL+F F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172
Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
+ H+ L+KE++IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI E D
Sbjct: 173 DELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226
Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAK 284
LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN R + + A KY +
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYRE 279
Query: 285 KVKAKTRRKMH--ELSNPLEPDEFADMW 310
K + K +K+ E L D AD++
Sbjct: 280 KQQVKDVQKLRKKEPKTILPHDPTADVF 307
>sp|Q8TDN6|BRX1_HUMAN Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1
PE=1 SV=2
Length = 353
Score = 263 bits (672), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 133/268 (49%), Positives = 181/268 (67%), Gaps = 16/268 (5%)
Query: 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
G ++NKE++L+ SR INFR RHLM ++ L+PH K D K++ K K +NE+ E+K+C
Sbjct: 54 GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112
Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
+ C++FE +K +DLY+W++ SP+GPS KFLV +HT+ ELK+TGN LK SRPLL+F F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172
Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
+ H+ L+KE++IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI E D
Sbjct: 173 DELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226
Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAK 284
LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN R + + A KY +
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYRE 279
Query: 285 KVKAKTRRKMH--ELSNPLEPDEFADMW 310
K + K +K+ E L D AD++
Sbjct: 280 KQQVKDVQKLRKKEPKTLLPHDPTADVF 307
>sp|Q5RAN2|BRX1_PONAB Ribosome biogenesis protein BRX1 homolog OS=Pongo abelii GN=BRIX1
PE=2 SV=1
Length = 353
Score = 261 bits (668), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 132/268 (49%), Positives = 180/268 (67%), Gaps = 16/268 (5%)
Query: 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
G ++NKE++L+ SR INFR RHLM ++ L+PH K D K++ K K +NE+ E+K+C
Sbjct: 54 GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112
Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
+ C++FE +K +DLY+W++ SP+GPS KFLV +HT+ ELK+TGN LK SRPLL+F F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172
Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
+ H+ L+KE++IQI TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI E D
Sbjct: 173 DELPHYALLKELLIQILSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226
Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAK 284
LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN R + + A KY +
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVTRSITAAKYRE 279
Query: 285 KVKAKTRRKMH--ELSNPLEPDEFADMW 310
K + K +K+ E L D AD++
Sbjct: 280 KQQVKDVQKLRKKEPKTLLPHDPTADVF 307
>sp|Q4QQT6|BRX1_RAT Ribosome biogenesis protein BRX1 homolog OS=Rattus norvegicus
GN=Brix1 PE=2 SV=1
Length = 352
Score = 261 bits (667), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 128/249 (51%), Positives = 171/249 (68%), Gaps = 14/249 (5%)
Query: 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
G ++NKE++L+ SR INFR RHLM ++ L+PH K D K++ K K +NE+ E+K+C
Sbjct: 53 GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 111
Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
+ C++FE +K +DLY+W++ SP+GPS KFLV +HT+ ELK+TGN LK SRPLL+F F
Sbjct: 112 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 171
Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
H+ L+KE +IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI E D
Sbjct: 172 DDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 225
Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAK 284
LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN R + + A KY +
Sbjct: 226 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVVRSITAAKYRE 278
Query: 285 KVKAKTRRK 293
K + K +K
Sbjct: 279 KQQVKDVQK 287
>sp|Q8UVY2|BRX1_XENLA Ribosome biogenesis protein BRX1 homolog OS=Xenopus laevis GN=brix1
PE=2 SV=1
Length = 339
Score = 261 bits (667), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 127/265 (47%), Positives = 179/265 (67%), Gaps = 18/265 (6%)
Query: 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
G ++NKE+VL+ SR INFR RHLM ++ SL+PH + + K++ K K +NE+ E+K+C
Sbjct: 47 GKWKNKERVLIFSSRGINFRTRHLMQDLRSLMPHSRAETKMDRKD-KLFVVNEVCEMKNC 105
Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
+ C++FE +K +DLY+W++ SP GPS KFLV +HT+ ELK++GN LK SRP+L+F F
Sbjct: 106 NKCIYFEAKKKQDLYMWLSNSPEGPSAKFLVQNIHTLAELKMSGNCLKGSRPILSFDPAF 165
Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
++ + L+KE++ QIFGTP+ H +S+P+ DH+F FSI D+ IWFRNYQI E D
Sbjct: 166 DREPQYALLKELLTQIFGTPRYHPRSQPFVDHIFTFSIADNRIWFRNYQII----EED-- 219
Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAK 284
LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN R + + A K +
Sbjct: 220 -------AALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQSPNMHRRMIRLATAAKVKE 272
Query: 285 KVKAKTRRKMHELSN----PLEPDE 305
K + K +K+ + + P++P E
Sbjct: 273 KQQVKEVQKLKKEEDRPVIPVDPTE 297
>sp|Q9DCA5|BRX1_MOUSE Ribosome biogenesis protein BRX1 homolog OS=Mus musculus GN=Brix1
PE=2 SV=3
Length = 353
Score = 261 bits (666), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 132/268 (49%), Positives = 179/268 (66%), Gaps = 16/268 (5%)
Query: 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSC 104
G ++NKE++L+ SR INFR RHLM ++ L+PH K D K++ K K +NE+ E+K+C
Sbjct: 54 GKWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKD-KLFVINEVCEMKNC 112
Query: 105 SSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNF 164
+ C++FE +K +DLY+W++ SP+GPS KFLV +HT+ ELK+TGN LK SRPLL+F F
Sbjct: 113 NKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAF 172
Query: 165 GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKV 224
H+ L+KE +IQIF TP+ H KS+P+ DHVF F+I+D+ IWFRN+QI E D
Sbjct: 173 DDLPHYALLKEFLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQII----EED-- 226
Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAK 284
LVE+GPRF LN IKIF GSFGGPTLYENP Y SPN R + + A KY +
Sbjct: 227 -------AALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYRE 279
Query: 285 KVKAKTRRKMH--ELSNPLEPDEFADMW 310
+ + K +K+ E L D AD++
Sbjct: 280 RQQVKDVQKLRKKEPKTILPHDPTADVF 307
>sp|Q08235|BRX1_YEAST Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BRX1 PE=1 SV=2
Length = 291
Score = 253 bits (646), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/263 (46%), Positives = 173/263 (65%), Gaps = 4/263 (1%)
Query: 47 FRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSS 106
F NK++ L+ SR +N+R+RHL+ ++ LLPH +K+ K++ K LNE+ EL +C++
Sbjct: 27 FMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDL-QQLNEIAELYNCNN 85
Query: 107 CLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGK 166
LFFE RKH+DLYLW++K PNGP++KF + +HTM+EL TGN LK SRP+L+F F
Sbjct: 86 VLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFES 145
Query: 167 DAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVA- 225
H++LIKE+++ FG P RKSKP+ DHV FSIVDD IW R Y+I+ H+ +K
Sbjct: 146 SPHYQLIKELLVHNFGVPPNARKSKPFIDHVMSFSIVDDKIWVRTYEIS--HSTKNKEEY 203
Query: 226 RGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKK 285
G + ++LVE+GPRF + I I GSFGGP +YEN YVSPN +RA K+ A + +
Sbjct: 204 EDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRAQIKQQAAEEAKSR 263
Query: 286 VKAKTRRKMHELSNPLEPDEFAD 308
+A RK+ N L D ++
Sbjct: 264 AEAAVERKIKRRENVLAADPLSN 286
>sp|Q9HGL6|BRX1_SCHPO Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1
Length = 295
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 113/261 (43%), Positives = 169/261 (64%), Gaps = 8/261 (3%)
Query: 50 KEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLF 109
K+KVLV SR + +R RHL+ ++VS++PH KKD+K+++K + LNEL EL +C++ F
Sbjct: 42 KQKVLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSKD-RLYQLNELAELYNCNNIFF 100
Query: 110 FECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAH 169
FE R+ +DLYL +A++PNGP+VKF V +HTM+EL +TGN LK SRP+L+F F H
Sbjct: 101 FESRRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPH 160
Query: 170 WKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGL 229
K++KE++ Q FG PK R+SKP+ D V +I D IWFRNY+I ++S
Sbjct: 161 LKVVKELLQQTFGIPKGARRSKPFIDRVCTLTIADGKIWFRNYEIRENEDKSK------- 213
Query: 230 DKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAK 289
D +TL+E+GPRF + I I GSFGGP +Y+N +VS +RA + A +Y + ++K
Sbjct: 214 DPVTLIEIGPRFVMTIINILEGSFGGPVIYKNDTFVSSTMVRAAIRNQAAQRYVNRQESK 273
Query: 290 TRRKMHELSNPLEPDEFADMW 310
R++ N + D +++
Sbjct: 274 LERQVRAQQNVIPEDPLDNVF 294
>sp|Q54JN0|BRX1_DICDI Ribosome biogenesis protein BRX1 homolog OS=Dictyostelium
discoideum GN=bxdc2 PE=3 SV=1
Length = 326
Score = 234 bits (597), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 117/256 (45%), Positives = 165/256 (64%), Gaps = 10/256 (3%)
Query: 50 KEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLF 109
K++VL T +R I +YRHLM +++SL+PH KK++K++ + + + +NE E+KSC+ +
Sbjct: 74 KKRVLFTSTRGIGSKYRHLMADLISLIPHSKKEDKIDDRKTL-SLINETCEMKSCNYAIL 132
Query: 110 FECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAH 169
F+ RK D +LWMAK+P GP+VKF + VHT++EL++TGN LK SRP L F +F + H
Sbjct: 133 FDVRKGTDCFLWMAKTPLGPTVKFHITNVHTLDELQMTGNCLKGSRPFLHFDKSFDSEVH 192
Query: 170 WKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGL 229
+LIKE+I QI+ TPK H KSKP+ DHVF F D IWFRNYQI+ + D +
Sbjct: 193 LQLIKELITQIYSTPKGHVKSKPFFDHVFSFFYQDGRIWFRNYQISDQEFKKDSL----- 247
Query: 230 DKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAK 289
L E+GPR ++ KIF FGG LY NP YVSPN R+ K +KA KY K+ K
Sbjct: 248 ----LTEIGPRMIMHIDKIFSDGFGGSVLYSNPNYVSPNNTRSDHKLSKANKYIKRKYQK 303
Query: 290 TRRKMHELSNPLEPDE 305
+ + + + +EP E
Sbjct: 304 GKAEERQKISFIEPSE 319
>sp|P34524|BRX1_CAEEL Ribosome biogenesis protein BRX1 homolog OS=Caenorhabditis elegans
GN=K12H4.3 PE=3 SV=1
Length = 352
Score = 229 bits (585), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 161/246 (65%), Gaps = 15/246 (6%)
Query: 46 VFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCS 105
++ N+E+VLV CSR + R R+LM ++ LLPH K D+K++ + S LNE+ E+K+C+
Sbjct: 58 LWTNRERVLVLCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQQKSLN-VLNEIAEMKNCT 116
Query: 106 SCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFG 165
++FE RK KD YLWM+ GPS+KFLV+ VHTM+ELK++GN L+ASRP+L+F F
Sbjct: 117 KVMYFESRKRKDTYLWMSNVEKGPSIKFLVHNVHTMKELKMSGNCLRASRPVLSFDDAFD 176
Query: 166 KDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVD-DHIWFRNYQITVPHNESDKV 224
K KLIK +++Q GTP H +S+P+ DHVF FS+ + D IWFRN+QI +ES
Sbjct: 177 KKPQLKLIKAVLMQTLGTPHHHPRSQPFVDHVFNFSVGEGDKIWFRNFQIV---DES--- 230
Query: 225 ARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAK 284
+ L EVGPRF L +++F GSF G LY+NP YVSPN IR +K + K
Sbjct: 231 -------LQLQEVGPRFVLEMVRLFAGSFEGAVLYDNPNYVSPNVIRREHRKGQHSYIEK 283
Query: 285 KVKAKT 290
++ K
Sbjct: 284 QLAVKA 289
>sp|Q9VZE6|BRX1_DROME Ribosome biogenesis protein BRX1 homolog OS=Drosophila melanogaster
GN=CG11583 PE=2 SV=2
Length = 359
Score = 228 bits (581), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 113/255 (44%), Positives = 166/255 (65%), Gaps = 19/255 (7%)
Query: 49 NKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCL 108
NK++VLV +R I+ R RHLM ++ +L+PH + ++K+E +S + +NE+ E+K C+ +
Sbjct: 48 NKQRVLVFSARGISHRDRHLMKDIKTLMPHHRPESKME-RSKTLSVVNEMCEMKHCNKAM 106
Query: 109 FFECRKHKDLYLWMAKSP--NGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGK 166
FE R+ +DLY+W++ + GPS KFL+ +HTM ELK+TGN L+ SRPLL+F S F +
Sbjct: 107 LFEGRRKRDLYMWISNTSGSTGPSAKFLIENIHTMAELKMTGNCLRGSRPLLSFDSKFDE 166
Query: 167 DAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVAR 226
H KL+KE+ +Q + P H KS+P+ DHVF F+ +D IWFRN+QI
Sbjct: 167 LPHLKLLKELFVQTYSVPNHHPKSQPFVDHVFTFTYLDKRIWFRNFQIL--------SED 218
Query: 227 GGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKV 286
GGL EVGPR+ +NP+KIF GSF G T++ENP YVSP++ R + KK KY +V
Sbjct: 219 GGLS-----EVGPRYVMNPVKIFDGSFTGKTIWENPDYVSPSKQRQVLKKAAKDKYVNRV 273
Query: 287 KAKTRRKMHELSNPL 301
+ K + HE + P+
Sbjct: 274 EQKVK---HEATRPI 285
>sp|O13823|IMP4_SCHPO U3 small nucleolar ribonucleoprotein protein imp4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=imp4 PE=3 SV=1
Length = 289
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 33/207 (15%)
Query: 52 KVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNK---VEAKSSKGATLNELVELKSCSSCL 108
KVLVT SR + R V L+P+ + N+ V + A N++ ++ +
Sbjct: 85 KVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDI-----VI 139
Query: 109 FFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTF---SSNFG 165
E R D L ++ P GP++ F ++ V ++ TG + + P L F +S G
Sbjct: 140 LHEHRGIPD-GLVISHLPYGPTLSFSLHNVVLRHDIPNTGT-MSEAYPHLIFENLTSKLG 197
Query: 166 KDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVA 225
K +K + +F P + + + P V F+ DD+I FR++ A
Sbjct: 198 KR-----VKTALSALF--PPDPKDTTP---RVVTFANTDDYISFRHH----------IYA 237
Query: 226 RGGLDKMTLVEVGPRFCLNPIKIFGGS 252
+ G ++ L E GPRF + +I G+
Sbjct: 238 KTGPKQIILSEAGPRFEMKLFEITLGT 264
>sp|O14180|YDS4_SCHPO Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC4F8.04 PE=4 SV=1
Length = 306
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 92/237 (38%), Gaps = 36/237 (15%)
Query: 17 DDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKV---LVTCSRRINFRYRHLMLNVV 73
D+++ E++P L + E+K+ E F + KV LVT S+R + + ++
Sbjct: 62 DETIIEDKPDEEL-----QAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDFASELL 116
Query: 74 SLLPHC---KKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPS 130
P+ K+ +E + E + + L + K L + PNGPS
Sbjct: 117 DCFPNAEFRKRTGDIEVHE-----IAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPS 171
Query: 131 VKFLVNAVHTMEELKLTGNHLKASRPLL--TFSSNFGKDAHWKLIKEMIIQIFGTPKEHR 188
F ++ + T +E+ G L+ FS+ G + + + IQ TP+
Sbjct: 172 FYFTLSNLQTAKEISNHGRSTGHIPELIINNFSTRLGMTVA-RAFQSLFIQ---TPQIQG 227
Query: 189 KSKPYHDHVFVFSIVDDHIWFR--NYQITVPHNESDKVARGGLDKMTLVEVGPRFCL 243
+ V D ++FR Y N D + G L E+GPRF +
Sbjct: 228 R------QVVTIHCQRDFLFFRRHRYAFREKSNMPDGIGTG------LQELGPRFTM 272
>sp|O62518|YHPK_CAEEL Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans
GN=ZK795.3 PE=4 SV=1
Length = 292
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 34/208 (16%)
Query: 52 KVLVTCSRRINFRYRHLMLNVVSLLPHCKK------DNKVEAKSSKGATLNELVELKSCS 105
K+++T SR + R + + + P+ ++ D K ++SK +L+
Sbjct: 79 KIVITTSRDPSSRLKMFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLI------ 132
Query: 106 SCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFG 165
+F E R + D L + P GP+ F + V ++ G + P L F +
Sbjct: 133 --IFTETRGNPDGML-VCHLPFGPTAFFSMANVVMRHDIPNCGT-MSEQYPHLIFDNLNS 188
Query: 166 KDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVA 225
K H ++ +F PK P + FS +D+I FR++ V E+D
Sbjct: 189 KLGH--RFTTILKHLFPVPK------PDSKRIITFSNSEDYISFRHH---VYKTENDG-- 235
Query: 226 RGGLDKMTLVEVGPRFCLNPIKIFGGSF 253
++ L E GPRF L P +I G+
Sbjct: 236 -----EVELTEAGPRFELKPYQIKLGTL 258
>sp|Q6C804|IMP4_YARLI U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=IMP4 PE=3 SV=1
Length = 283
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 30/212 (14%)
Query: 33 KDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKG 92
+D+I+ + + G+ KV+VT SR + R V L P + N+ G
Sbjct: 63 QDEIDDEYSAMSGI--TDPKVVVTTSRDPSTRLSQFAKEVKLLFPTSIRLNR------GG 114
Query: 93 ATLNELVEL-KSCSSCLFFECRKHKDLYLWMAKS--PNGPSVKFLVNAVHTMEELKLTGN 149
L LV K+ +S +H+ + M S P+GP+ F ++ V +L TGN
Sbjct: 115 TVLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVVLRHDLPDTGN 174
Query: 150 HLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWF 209
+ P L F NF D ++++ I++ P + S V F+ D I
Sbjct: 175 -MSEVHPHLIF-DNFTTDLGKRVVQ--ILKHLFPPGVKKDSA----RVITFANRGDFISV 226
Query: 210 RNYQITVPHNESDKVARGGLDKMTLVEVGPRF 241
R + + V E + L EVGPRF
Sbjct: 227 RQH-VYVKTREG----------VELAEVGPRF 247
>sp|P38789|SSF1_YEAST Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSF1 PE=1 SV=1
Length = 453
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 232 MTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTR 291
+ L E+GPR L +KI G G L+ S +I+ALEK ++A K++ K +
Sbjct: 326 IKLTELGPRLTLKLVKIEEGICSGKVLHHEFVQKSSEEIKALEK-----RHAAKMRLKEQ 380
Query: 292 RKMHELSN 299
RK + N
Sbjct: 381 RKKEQEEN 388
>sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSF2 PE=1 SV=1
Length = 453
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 232 MTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTR 291
+ L E+GPR L +KI G G L+ S +I+ALEK ++A K++ K +
Sbjct: 326 IKLTELGPRLTLKLVKIEDGICSGKVLHHEFVQKSSEEIKALEK-----RHAAKMRLKEQ 380
Query: 292 RKMHELSN 299
R+ + N
Sbjct: 381 RRKEQEEN 388
>sp|O14206|YDD3_SCHPO Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1B9.03c PE=1 SV=2
Length = 389
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 234 LVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIR 271
L+E+GPR L IKI + GG LY + + S +I+
Sbjct: 289 LIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIK 326
>sp|Q6F8J3|HEM1_ACIAD Glutamyl-tRNA reductase OS=Acinetobacter sp. (strain ADP1) GN=hemA
PE=3 SV=1
Length = 431
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 87 AKSSKGATLNELVELKSCSSCLFFECRKHKDLYL-WMAKSPNGPSVKFLVNAVHTMEELK 145
A+ A LN++V + +C+ + +H D+ L W+A++ NG +K L++ V+ E+ +
Sbjct: 33 AQQRNHAHLNDMVVVSTCNRTEVYAMTEHADILLNWLAQT-NGIDIKQLLHHVYRYEDAQ 91
Query: 146 LTGNHLKASRPL 157
+ ++ + L
Sbjct: 92 AVTHLMRVASGL 103
>sp|Q8CV14|SPEE_OCEIH Probable spermidine synthase OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=speE PE=3
SV=1
Length = 512
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 79 CKKDNKVEAKSSKGATLNELVELKSCSSCLFFE-CRKHKDLYLWMAKSPNGPSVKFLVNA 137
+N+ + ++GA ++E VE+K+ + F E + D+ L PN S +N
Sbjct: 327 LANENRHLLEINEGALMDEKVEVKNMDAFQFLEDTSEWYDVILVDLPDPNNES----LNK 382
Query: 138 VHTMEELKLTGNHLKASRPLLTFSSN--FGKDAHWKL 172
++T E L NHLK L+ +++ F ++ +W +
Sbjct: 383 LYTKEFYSLVRNHLKPEGTLMVQATSPVFAREVYWTI 419
>sp|Q54DJ0|RPF2_DICDI Ribosome production factor 2 homolog OS=Dictyostelium discoideum
GN=bxdc1 PE=3 SV=1
Length = 307
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 61/151 (40%), Gaps = 10/151 (6%)
Query: 97 ELVELKSCSSCLFFEC-RKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKA-- 153
E + KS SS F K ++ L M + + + + + +K G A
Sbjct: 84 EFLGEKSNSSLFTFGSHSKKREHNLIMGRLFDNAVFDMIEMGISNFKSIKEFGADGSAVG 143
Query: 154 SRPLLTFSSN-FGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNY 212
++P+ F N F + K + + + +F + DHV + + VDD I FR+Y
Sbjct: 144 NKPMFIFQGNEFENNETVKKVGNLFLDMFRGRLVEYINLVGLDHVVIMTAVDDKILFRHY 203
Query: 213 QITVPHNESDKVARGGLDKMTLVEVGPRFCL 243
+ S + K+ L EVGP F +
Sbjct: 204 TTIFSPSGSK------IPKVDLKEVGPSFDI 228
>sp|Q5BPS3|DOR_ARATH F-box protein DOR OS=Arabidopsis thaliana GN=DOR PE=1 SV=2
Length = 387
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 73 VSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSC-LFFECRKHKDLYLWMAKSPNGPS 130
V + C+ +K+ A + EL KSC+ L F C+KH++L+ + P+ P+
Sbjct: 39 VKSIARCRCVSKLWASILRLPYFTELYLTKSCARPRLLFACQKHRELFFFSTPQPHNPN 97
>sp|Q9VKB4|RPF1_DROME Probable ribosome production factor 1 OS=Drosophila melanogaster
GN=CG6712 PE=2 SV=1
Length = 394
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 25/209 (11%)
Query: 52 KVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFE 111
KVL+T + + R L + + P+ K+ KSS + + E + + +
Sbjct: 186 KVLITFADNPVTKTRKFGLELSRIFPNALV--KIRNKSS-VKKICKSAEREEFTDVVIVN 242
Query: 112 CRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRP---LLTFSSNFGKDA 168
+ K L + PNGP+ F ++ V ++K + RP L F++ G
Sbjct: 243 EDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLG--- 299
Query: 169 HWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGG 228
+ M+ +F E R + F D+I+FR H+ + G
Sbjct: 300 --LTVGRMLGALFHHDPEFRGRR-----AVTFHNQRDYIFFR-------HHRYEFTKEG- 344
Query: 229 LDKMTLVEVGPRFCLNPIKIFGGSFGGPT 257
++ L E+GPRF L + G+F T
Sbjct: 345 -KRVKLRELGPRFTLKLRSLQEGTFDSKT 372
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,877,431
Number of Sequences: 539616
Number of extensions: 5191848
Number of successful extensions: 11818
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 11776
Number of HSP's gapped (non-prelim): 29
length of query: 312
length of database: 191,569,459
effective HSP length: 117
effective length of query: 195
effective length of database: 128,434,387
effective search space: 25044705465
effective search space used: 25044705465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)