Query 021463
Match_columns 312
No_of_seqs 173 out of 813
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 03:09:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2971 RNA-binding protein re 100.0 1E-85 2.2E-90 597.0 23.1 293 1-312 1-298 (299)
2 COG5154 BRX1 RNA-binding prote 100.0 1.3E-71 2.9E-76 494.2 21.2 260 44-311 24-283 (283)
3 KOG2963 RNA-binding protein re 100.0 5.2E-45 1.1E-49 343.7 23.4 238 50-290 25-344 (405)
4 PF04427 Brix: Brix domain; I 100.0 8.1E-42 1.8E-46 302.7 9.3 188 55-248 1-191 (191)
5 smart00879 Brix Brix domain. T 100.0 1.2E-36 2.5E-41 265.9 20.6 176 54-243 1-180 (180)
6 KOG2781 U3 small nucleolar rib 100.0 2.7E-35 5.9E-40 267.1 20.0 200 50-272 82-285 (290)
7 KOG2780 Ribosome biogenesis pr 100.0 1.7E-33 3.6E-38 258.2 16.8 192 49-260 95-289 (302)
8 KOG3031 Protein required for b 100.0 9.3E-34 2E-38 261.3 10.2 196 45-250 22-228 (307)
9 COG5106 RPF2 Uncharacterized c 99.9 1.3E-22 2.9E-27 184.4 8.9 196 45-250 22-235 (316)
10 COG2136 IMP4 Predicted exosome 99.8 1.2E-18 2.6E-23 156.0 16.5 180 51-251 2-187 (191)
11 PRK03972 ribosomal biogenesis 99.7 5.6E-16 1.2E-20 140.0 19.9 178 53-251 2-193 (208)
12 PRK00933 ribosomal biogenesis 97.7 0.00092 2E-08 59.0 13.6 114 53-181 1-114 (165)
13 PF05508 Ran-binding: RanGTP-b 29.0 30 0.00065 33.6 1.4 21 234-254 186-206 (302)
14 PRK10178 D-alanyl-D-alanine di 27.0 1.1E+02 0.0023 27.7 4.5 50 230-279 6-56 (184)
15 PRK03972 ribosomal biogenesis 23.0 5.6E+02 0.012 23.6 8.5 73 53-135 107-187 (208)
No 1
>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-85 Score=597.04 Aligned_cols=293 Identities=62% Similarity=0.991 Sum_probs=267.2
Q ss_pred CCcc--ccccc--ccCCCCCCCCCCcCCccccccCCCcccccccccCCCccccCCeEEEEccCCCCHHHHHHHHHHHhcC
Q 021463 1 MGKK--RKHTE--IIEPTKKDDSVTEERPKRTLLGWKDKIEIKETEAPGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLL 76 (312)
Q Consensus 1 ~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nk~kvLI~~sr~~s~~~r~L~kDL~~Ll 76 (312)
||++ +|+++ ..++.++.+..+|++|.|+. ...++..++ ++.|.|+++|||++|||++.++||||+||..||
T Consensus 1 Mg~~~k~k~~~~~~~~~~~~~~e~~~~~pqr~~-~~~~~~~pk----~~~w~NK~rvlv~ssRgis~R~RhLm~di~~Ll 75 (299)
T KOG2971|consen 1 MGRKYKRKKSETAPKAEDKKSEENAPEPPQRNL-EESDDFVPK----KEKWKNKERVLVLSSRGISFRTRHLMKDISSLL 75 (299)
T ss_pred CcchhhhhhccccCcccccchhccCCCCCcccc-ccccccccc----ccccccceeEEEEecCCchHHHHHHHHHHHHhc
Confidence 7877 67777 33334444444789998881 111222333 677999999999999999999999999999999
Q ss_pred CCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCCCeEEEEEeeeEehHHHhhhCCCCCCCCC
Q 021463 77 PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELKLTGNHLKASRP 156 (312)
Q Consensus 77 P~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~GPTi~F~V~n~~t~~elk~~gn~~k~srP 156 (312)
||++.++|++++.++. .|+++|++++|+.||||+++|++|+||||+++|+|||++|.|+|+|||+|++++|||++||||
T Consensus 76 ph~k~dsk~d~~k~l~-~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~GpSvkFlv~n~hTM~ElkmtgN~lkgsrp 154 (299)
T KOG2971|consen 76 PHSKKDSKLDRKKKLG-VLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGPSVKFLVHNVHTMAELKMTGNCLKGSRP 154 (299)
T ss_pred ccccccchhhhcchHH-HHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCCceEEehhhhhhHHHhCCccccccCCcc
Confidence 9999999999888886 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCeEEEEEEeeeccCCCCcccccCCCcceEEEE
Q 021463 157 LLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVE 236 (312)
Q Consensus 157 lLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~dd~I~fRhY~I~~~~~e~e~~~~~~~~~v~L~E 236 (312)
+|+||.+|++.|||+++|+||+++|++|.+|++|+||+|||++|++.||+||||+|||... +.+.|+|
T Consensus 155 lLsFd~~Fd~~pHlkl~Kell~q~fgiP~~hrkSkpf~Dhvf~Fsi~D~~IWfRnyqI~~~------------ed~~L~E 222 (299)
T KOG2971|consen 155 LLSFDKAFDELPHLKLLKELLEQIFGIPKHHRKSKPFVDHVFTFSILDGKIWFRNYQISEE------------EDKTLIE 222 (299)
T ss_pred eeecccccccchHHHHHHHHHHHHcCCCCCCcccCCccceEEEEEEecCeEEEEEeEeccc------------cCcceee
Confidence 9999999999999999999999999999999999999999999999999999999999621 2479999
Q ss_pred eccceeeeeEEeecCCCCCCeeeeCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhcCCCCCCCh-hhhcccC
Q 021463 237 VGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYAKKVKAKTRRKMHELSNPLEPDE-FADMWKE 312 (312)
Q Consensus 237 IGPRf~L~l~kI~~G~f~G~vly~n~~~vsp~~~r~~~k~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 312 (312)
|||||+|++++|++|+|+|++||+|+.|||||++|+.+++.+|.+| +|++++.+|+.|+.++.+++|+ ++++|++
T Consensus 223 iGPRfvl~~ikif~gsFgG~~lYenp~yvspn~~r~~~k~~~a~k~-~k~ka~~~rkir~~~~~l~~d~vf~~~~~~ 298 (299)
T KOG2971|consen 223 IGPRFVLNVIKIFEGSFGGPTLYENPKYVSPNMIRAVIKKQAAGKY-QKVKAKTERKIRALENVLEEDPVFADMAKD 298 (299)
T ss_pred eccHHHHhHHHHHhccCCCceeecCccccCHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHhcCCCCCCchhhhhhcc
Confidence 9999999999999999999999999999999999999999999999 9999999999999999999999 7888863
No 2
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-71 Score=494.18 Aligned_cols=260 Identities=41% Similarity=0.739 Sum_probs=249.3
Q ss_pred CCccccCCeEEEEccCCCCHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEE
Q 021463 44 PGVFRNKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMA 123 (312)
Q Consensus 44 ~~~~~nk~kvLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~ 123 (312)
...|-|+|++||++|||++.+.||||+||..|+||++++.|++.+.++. +|+++|+.++|++++||+++|+.++|||++
T Consensus 24 ~~~f~~kq~~lilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk~l~-qLnelaelynCnn~lFFesrkr~Dlyl~~a 102 (283)
T COG5154 24 SAGFVPKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLG-QLNELAELYNCNNMLFFESRKRSDLYLMGA 102 (283)
T ss_pred hhcccccceEEEEecCCchHHHHHHHHHHHHhCcccccccccchhhhHH-HHHHHHHHhcCCceEEEeecccccceeeec
Confidence 5568899999999999999999999999999999999999999999997 899999999999999999999999999999
Q ss_pred eCCCCCeEEEEEeeeEehHHHhhhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEe
Q 021463 124 KSPNGPSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIV 203 (312)
Q Consensus 124 rlP~GPTi~F~V~n~~t~~elk~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~ 203 (312)
+.|+|||++|+++|.|||+|+.++|||++||+|+|+||..|++.|||+++|+++.++|+.|.+.++|+||+|||++|++.
T Consensus 103 r~pnGptvkF~~~NlhTMdelNftgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f~i~ 182 (283)
T COG5154 103 RIPNGPTVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFIL 182 (283)
T ss_pred cCCCCCeEEEEEeccchHhhcCCccccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhheEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEEeeeccCCCCcccccCCCcceEEEEeccceeeeeEEeecCCCCCCeeeeCCCCCCHHHHHHHHHHhhhhHHH
Q 021463 204 DDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALEKKNKAGKYA 283 (312)
Q Consensus 204 dd~I~fRhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI~~G~f~G~vly~n~~~vsp~~~r~~~k~~~~~k~~ 283 (312)
||+||+|+|.|.-. .| .+.+.|+|.||||||+|.+++|.+|+|+|++||.|..|||++++|++.+.+.|..|.
T Consensus 183 DgkIWvR~YeI~re---~e----d~~~dv~L~EIGPRfVmtvi~iLEgsFgGp~iYkn~~~vs~~~vra~ir~qaae~~~ 255 (283)
T COG5154 183 DGKIWVRCYEIGRE---NE----DKSKDVKLEEIGPRFVMTVIKILEGSFGGPAIYKNETFVSSTMVRAAIRNQAAENLF 255 (283)
T ss_pred cCeEEEEEEeeccc---cc----cccccceeeeeccHHHHHHHHHHHhccCCceeeecccccchHHHHHHHHHHHHHHHH
Confidence 99999999999632 22 123469999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCCChhhhccc
Q 021463 284 KKVKAKTRRKMHELSNPLEPDEFADMWK 311 (312)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (312)
.|++...+|+.+.+++.+++|||+.||.
T Consensus 256 ~R~es~~er~vr~~~nvi~~dpl~n~f~ 283 (283)
T COG5154 256 ARKESNLERQVRAQQNVIPEDPLDNVFA 283 (283)
T ss_pred hhhhHHHHHHHHHhcCCCCCCchhhhcC
Confidence 9999999999999999999999999995
No 3
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-45 Score=343.66 Aligned_cols=238 Identities=23% Similarity=0.334 Sum_probs=202.0
Q ss_pred CCeEEEEccCCCCHHHHHHHHHHHhcC-CCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCC
Q 021463 50 KEKVLVTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 128 (312)
Q Consensus 50 k~kvLI~~sr~~s~~~r~L~kDL~~Ll-P~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~G 128 (312)
.+.+++.+++-++..+++|..|||+|| |||+..+|..++|+|+ |++.+|...|+||+++|+.+.. .++|.|+|+|.|
T Consensus 25 ~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iK-Dfv~~~gplGVTH~l~lskt~~-nlslki~R~PqG 102 (405)
T KOG2963|consen 25 SPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLK-DFVVMSGPLGVTHLLMLSKTET-NLSLKIARTPQG 102 (405)
T ss_pred CceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhh-hHHhhcccccceEEEEEecccC-ceeEEEEecCCC
Confidence 456777777777799999999999999 9999999999999998 8999999999999999987775 799999999999
Q ss_pred CeEEEEEeeeEehHHHhhh------CCCCCCCCCeEEEcCCCCCc--hhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEE
Q 021463 129 PSVKFLVNAVHTMEELKLT------GNHLKASRPLLTFSSNFGKD--AHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVF 200 (312)
Q Consensus 129 PTi~F~V~n~~t~~elk~~------gn~~k~srPlLvF~~~F~~~--~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F 200 (312)
||++|+|..|++.+|+... -|-+--+.|+||++ +|++. +|++|+..|||||||+.+++++++..|+||+.+
T Consensus 103 PTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmN-gFg~~~~~HlkL~~t~FQNmFPsInv~tvnlntikRclli 181 (405)
T KOG2963|consen 103 PTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLN-GFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLLI 181 (405)
T ss_pred CceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEc-cCCCCcchhHHHHHHHHHHcCCCcCcceeeccceeEEEEE
Confidence 9999999999999999742 12334579999996 99876 899999999999999999999999999999999
Q ss_pred EEe--CCeEEEEEEeeeccCC----------------------------------------CCcccc-------------
Q 021463 201 SIV--DDHIWFRNYQITVPHN----------------------------------------ESDKVA------------- 225 (312)
Q Consensus 201 ~~~--dd~I~fRhY~I~~~~~----------------------------------------e~e~~~------------- 225 (312)
+|. ++.|.||||.|.+.+. ++|..+
T Consensus 182 nyn~dt~eIdmRHysI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~~~~~~~ 261 (405)
T KOG2963|consen 182 NYNRDTGEIDMRHYSIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIVDNQDVK 261 (405)
T ss_pred ecCCCCCeeeeeeeEEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEeccccch
Confidence 995 4679999999987641 122110
Q ss_pred -----------c----CCCcceEEEEeccceeeeeEEeecCCCCCCeeeeCCCCCCHHHHHHHH---HHhhhhHHHHHHH
Q 021463 226 -----------R----GGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLYENPFYVSPNQIRALE---KKNKAGKYAKKVK 287 (312)
Q Consensus 226 -----------~----~~~~~v~L~EIGPRf~L~l~kI~~G~f~G~vly~n~~~vsp~~~r~~~---k~~~~~k~~~~~~ 287 (312)
. ..+..|+|+||||||||+|+||++|.|+|.||||.+..+|+.++.++. .++++.|.+++++
T Consensus 262 ~eveL~q~~~s~g~~~~qksaikL~EIGPRlTlqLvKIeEGi~~GkVlyH~hv~Kt~eEi~~l~~~~ekk~~lKeqRkke 341 (405)
T KOG2963|consen 262 EEVELPQPKASRGNQPPQKSAIKLTEIGPRLTLQLVKIEEGICEGKVLYHEHVQKTEEEIKALRKRHEKKRRLKEQRKKE 341 (405)
T ss_pred hhhhccccccccCCCcccccceeeEeecccceEEEEEeeccccccceEEeehhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 125689999999999999999999999999999999999999986554 3455566666666
Q ss_pred HHH
Q 021463 288 AKT 290 (312)
Q Consensus 288 ~~~ 290 (312)
|++
T Consensus 342 Q~e 344 (405)
T KOG2963|consen 342 QEE 344 (405)
T ss_pred HHH
Confidence 554
No 4
>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.
Probab=100.00 E-value=8.1e-42 Score=302.73 Aligned_cols=188 Identities=37% Similarity=0.588 Sum_probs=76.7
Q ss_pred EEccCCCCHHHHHHHHHHHhcC-CCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCCCeEEE
Q 021463 55 VTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVKF 133 (312)
Q Consensus 55 I~~sr~~s~~~r~L~kDL~~Ll-P~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~GPTi~F 133 (312)
|++|+++|.++++|++||+.++ ||+.+..+ .+.|.++ ++.++|..++|++++++++++++|++|||+|+|+|||++|
T Consensus 1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~~~r-~~~~~l~-~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f 78 (191)
T PF04427_consen 1 ITTSRKPSKRLRQLMKDLRSLFPPNSKKLNR-KKKNSLK-DLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEF 78 (191)
T ss_dssp -EESSS--HHHHHHHHHHHTTS-TTEEE----TT---HH-HHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCeEEEeC-CCCCchH-HHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEE
Confidence 6899999999999999999999 88876433 2233576 8999999999999999988888899999999999999999
Q ss_pred EEeeeEehHHHhhhCCCCCCCCCeEEEcCCC-CCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCe-EEEEE
Q 021463 134 LVNAVHTMEELKLTGNHLKASRPLLTFSSNF-GKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDH-IWFRN 211 (312)
Q Consensus 134 ~V~n~~t~~elk~~gn~~k~srPlLvF~~~F-~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~dd~-I~fRh 211 (312)
+|+||++++|++..+....+++|+|+|++.+ +.+++++++++||+++|+++.++...++++||||+|++++|. |||||
T Consensus 79 ~I~~~~~~~~~~~~~~~~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~fR~ 158 (191)
T PF04427_consen 79 SIENYKLMKDIKSSSKRPKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFFRH 158 (191)
T ss_dssp EEEEEE-HHHHT-------S---EEEEE----------------------------------------------------
T ss_pred EEEeEEEhhHhcccccCCCCCCeEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999986655555889999998332 335899999999999999999999999999999999999888 99999
Q ss_pred EeeeccCCCCcccccCCCcceEEEEeccceeeeeEEe
Q 021463 212 YQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKI 248 (312)
Q Consensus 212 Y~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI 248 (312)
| |..+ +++ ..+...+.|+|+||||||+|+|+||
T Consensus 159 Y-i~~~--~~~-~~~~~~~~v~L~EiGPr~~l~l~kI 191 (191)
T PF04427_consen 159 Y-IFKS--GSK-NPKKLLPRVELVEIGPRFTLKLRKI 191 (191)
T ss_dssp -------------------------------------
T ss_pred c-cccc--ccc-cccccccccccccccccccccccCC
Confidence 9 7322 111 0001114689999999999999987
No 5
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=100.00 E-value=1.2e-36 Score=265.90 Aligned_cols=176 Identities=40% Similarity=0.576 Sum_probs=151.7
Q ss_pred EEEccCCCCHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHhhhC-CCCeEEEEeee-CCCCCeEEEEeCCCCCeE
Q 021463 54 LVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELK-SCSSCLFFECR-KHKDLYLWMAKSPNGPSV 131 (312)
Q Consensus 54 LI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kkn~lk~~i~~~a~~~-~cs~~l~fe~~-Kk~~~~L~i~rlP~GPTi 131 (312)
||++||++|.++++|++||+.++|++.+..+ .++.+. .+.++|... +|+++++++.+ +++|.+|||+++|+|||+
T Consensus 1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~r--~~~~~~-~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l 77 (180)
T smart00879 1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINR--GKNKLN-ELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTL 77 (180)
T ss_pred CEEcCCCCCHHHHHHHHHHHHHCCCcEeecc--cCccHH-HHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcE
Confidence 6899999999999999999999987765433 234454 577777666 88999999876 678999999999999999
Q ss_pred EEEEeeeEehHHHhh--hCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCeEEE
Q 021463 132 KFLVNAVHTMEELKL--TGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIWF 209 (312)
Q Consensus 132 ~F~V~n~~t~~elk~--~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~dd~I~f 209 (312)
.|.+.+|.+++|+.. .+|+..+++|+|+|+ +|....+ ++++++|+++|+.+..+..+++++|||++|++.+|.|||
T Consensus 78 ~f~i~~v~~~~~~~~~~~~~~~~~~~P~li~~-~~~~~~~-~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~ 155 (180)
T smart00879 78 DFKILNVSLRKELKGFKTGNCLTGSRPLLIFN-NFFTELG-KLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFF 155 (180)
T ss_pred EEEEECcccHhhhhhhhcCCCcCCCccEEEEC-CCCCchH-HHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEE
Confidence 999999999999986 578999999999997 5554443 789999999999999999999999999999999999999
Q ss_pred EEEeeeccCCCCcccccCCCcceEEEEeccceee
Q 021463 210 RNYQITVPHNESDKVARGGLDKMTLVEVGPRFCL 243 (312)
Q Consensus 210 RhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L 243 (312)
|||+|.+. .+.++++|+||||||+|
T Consensus 156 R~y~i~~~---------~~~~~v~l~eiGPr~~l 180 (180)
T smart00879 156 RHYRIKFG---------KKKPRVELQEIGPRFTL 180 (180)
T ss_pred EEEEEEcc---------CCCCceEEEEecCCccC
Confidence 99999762 12467999999999986
No 6
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=100.00 E-value=2.7e-35 Score=267.13 Aligned_cols=200 Identities=22% Similarity=0.339 Sum_probs=178.1
Q ss_pred CCeEEEEccCCCCHHHHHHHHHHHhcCCCCcccccccccCc-chhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCC
Q 021463 50 KEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSS-KGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 128 (312)
Q Consensus 50 k~kvLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kkn~-lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~G 128 (312)
-+|+|||+||.+|+++.+|+|+|+.++||+.. ++++|. +. .|++.|..+|+|.+|++...+..|..|.++++|-|
T Consensus 82 dPKimvTTSR~PSsrL~~FaKelkLvfPNaqr---~nRG~~~~~-~lv~a~ra~~~Td~iivHEhRG~PdgL~vshlPfG 157 (290)
T KOG2781|consen 82 DPKIMVTTSRDPSSRLKMFAKELKLVFPNAQR---LNRGNYVVG-ELVDAARANGVTDLIIVHEHRGIPDGLVVSHLPFG 157 (290)
T ss_pred CCcEEEEeCCCchHHHHHHHHhheEeccChhh---hcccceeHH-HHHHHHHHCCCceEEEEeccCCCCCceEEEecCCC
Confidence 57999999999999999999999999999975 678875 55 89999999999999999888888999999999999
Q ss_pred CeEEEEEeeeEehHHHhhhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCeEE
Q 021463 129 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIW 208 (312)
Q Consensus 129 PTi~F~V~n~~t~~elk~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~dd~I~ 208 (312)
||+.|.+.|+.+.+|+...|+ ++..+|.|+|+ ||++..+.+ ++.+|..+||+|+.+ -.|||+|.+.+|.|-
T Consensus 158 PTa~Fsl~nvVmRhdip~~G~-msE~~phlIfd-Nf~t~lG~R-v~~iLkhLFP~pk~d------s~Rvvtf~N~~DyIs 228 (290)
T KOG2781|consen 158 PTAFFSLHNVVMRHDIPDIGT-MSEQKPHLIFD-NFTTKLGKR-VKTILKHLFPVPKDD------SKRVVTFANRNDYIS 228 (290)
T ss_pred CceEeeeeeeeeccccccccc-ccccCceEEec-cccchHHHH-HHHHHHHhCCCCcCC------cccEEEEecCCceEE
Confidence 999999999999999998886 45569999997 999988765 899999999988744 489999999999999
Q ss_pred EEEEeeeccCCCCcccccCCCcceEEEEeccceeeeeEEeecCCCC---CCeeeeCCCCCCHHHHHH
Q 021463 209 FRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFG---GPTLYENPFYVSPNQIRA 272 (312)
Q Consensus 209 fRhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI~~G~f~---G~vly~n~~~vsp~~~r~ 272 (312)
||||.|... +...++|.|+||||.|+|+-|..|++. +++.|....|+..+.-|.
T Consensus 229 FRhhvy~~~----------~~k~vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nTa~kR~ 285 (290)
T KOG2781|consen 229 FRHHVYKKT----------DGKEVELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNTARKRD 285 (290)
T ss_pred EEEEEEecC----------CCceEEEeeccccceeeeeeeeecceeccccceeEEecchhcchhhhh
Confidence 999999742 225699999999999999999999986 899999999887665443
No 7
>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=258.19 Aligned_cols=192 Identities=21% Similarity=0.322 Sum_probs=164.4
Q ss_pred cCCeEEEEccCCCCHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCC
Q 021463 49 NKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 128 (312)
Q Consensus 49 nk~kvLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~G 128 (312)
..+|+||+++.++..+...||..|..++||+... ..+.-.++ .|.++|...++|+++++...++.++.|.|+++|+|
T Consensus 95 ~spKvlITt~~~~~~~t~~~~~eL~~iiPNs~~~--~R~~~~vk-~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~G 171 (302)
T KOG2780|consen 95 FSPKVLITTSKNPKRTTYKFASELLDIIPNSTVK--KRDNYTVK-SIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNG 171 (302)
T ss_pred cCccEEEEcCCCCcccHHHHHHHHHHhCCCceEE--ecCCchHH-HHHHHHHHhcCCceEEEecCcCCccceEEEecCCC
Confidence 3479999999999999999999999999999653 22333476 79999999999998877544445788999999999
Q ss_pred CeEEEEEeeeEehHHHhhhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCeEE
Q 021463 129 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDHIW 208 (312)
Q Consensus 129 PTi~F~V~n~~t~~elk~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~dd~I~ 208 (312)
||++|.++||.+.+|++..|++ .+..|.|+.+ ||++..++. +.+||+++|+.+..- ..+||++|++++|+||
T Consensus 172 PT~~Fkls~~~~~kdi~k~g~~-t~h~PElIlN-NFtTrlG~~-v~r~f~sLfp~~p~f-----~gRrvvtFhnQrD~If 243 (302)
T KOG2780|consen 172 PTAYFKLSNVVLTKDIKKHGRP-TSHIPELILN-NFTTRLGMT-VGRLFASLFPHDPQF-----TGRRVVTFHNQRDYIF 243 (302)
T ss_pred CceEEEeecccchhhhhhcCCc-ccccchhhhh-cccchhhHH-HHHHHHHhCCCCccc-----cceeEEEEEecCceEE
Confidence 9999999999999999999954 5578999996 999988775 899999999876522 2499999999999999
Q ss_pred EEEEeeeccCCCCcccccCCCcceEEEEeccceeeeeEEeecCCCC---CCeeee
Q 021463 209 FRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGGSFG---GPTLYE 260 (312)
Q Consensus 209 fRhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI~~G~f~---G~vly~ 260 (312)
||||+|.+...+ .++.|+|+||||||+|.++++|.|+ |+.-|.
T Consensus 244 FRhhRY~Fkee~---------~kvglqElGPrfTLrL~~lq~G~fd~K~ge~~~~ 289 (302)
T KOG2780|consen 244 FRHHRYEFKEEE---------IKVGLQELGPRFTLRLRRLQKGTFDEKEGEFEWV 289 (302)
T ss_pred EEEEEEeecccc---------cccchhhcCCceeeeehhhhhccccccceeeeee
Confidence 999999997422 5689999999999999999999997 666665
No 8
>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.3e-34 Score=261.30 Aligned_cols=196 Identities=16% Similarity=0.285 Sum_probs=180.7
Q ss_pred CccccCCeEEEEccCCCCHHHHHHHHHHHhcC-CCCcccccccccCcch-----hhHHHHhhhCCCCeEEEEeeeCCCCC
Q 021463 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKSSKG-----ATLNELVELKSCSSCLFFECRKHKDL 118 (312)
Q Consensus 45 ~~~~nk~kvLI~~sr~~s~~~r~L~kDL~~Ll-P~sk~~~K~~kkn~lk-----~~i~~~a~~~~cs~~l~fe~~Kk~~~ 118 (312)
...+|....|++.+..++..+.+.|.||..|- |... ++.++|+++ +.|++++++++|+.+++++++|++|+
T Consensus 22 klve~~k~alf~~g~~~~~tl~~vm~dl~alKKp~~i---~~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~ 98 (307)
T KOG3031|consen 22 KLVENHKDALFLPGMKTNKTLLDVMKDLYALKKPLEI---RYNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPN 98 (307)
T ss_pred hhchhhhhhhccCchhhchHHHHHHHHHHHhccCcee---eeccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCC
Confidence 45778889999999999999999999999996 6554 578888875 57999999999999999999999999
Q ss_pred eEEEEeCCCC---CeEEEEEeeeEehHHHhhhCCCCCCCCCeEEEc-CCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021463 119 YLWMAKSPNG---PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFS-SNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYH 194 (312)
Q Consensus 119 ~L~i~rlP~G---PTi~F~V~n~~t~~elk~~gn~~k~srPlLvF~-~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~ 194 (312)
||+|||++++ +|++|+|+||.+..+++.++ +..|++|+|+|. ..|++.+.++.+++||.|+|+++.++.+.+.++
T Consensus 99 nLv~gR~fd~~vlDMiElgI~~ykslsdF~~~k-~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl 177 (307)
T KOG3031|consen 99 NLVIGRTFDYEVLDMIELGIENYKSLSDFKAAK-ITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGL 177 (307)
T ss_pred ceEEEEecCchhhHHHHHhhhhhhhhhhhhccC-CCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccc
Confidence 9999999999 99999999999999999875 788999999999 799999999999999999999999999999999
Q ss_pred CEEEEEEEeCCe-EEEEEEeeeccCCCCcccccCCCcceEEEEeccceeeeeEEeec
Q 021463 195 DHVFVFSIVDDH-IWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFG 250 (312)
Q Consensus 195 drVi~F~~~dd~-I~fRhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI~~ 250 (312)
+||++|++.++. |+||+|.+..++|+ +++|+|+|.||||+++|+++++.-
T Consensus 178 ~~v~vfta~~~~~v~~r~Y~lklkKs~------~~~PRiELeE~GPsldf~irR~~~ 228 (307)
T KOG3031|consen 178 EYVIVFTATEETNVLFRVYRLKLKKSG------TRTPRIELEEMGPSLDFEIRRTKL 228 (307)
T ss_pred cEEEEEEeecCceeeeeeeeeeeeecc------CCCCceehhhcCCceeEEEEeccC
Confidence 999999998765 99999999998775 468999999999999999999874
No 9
>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=1.3e-22 Score=184.40 Aligned_cols=196 Identities=14% Similarity=0.230 Sum_probs=167.8
Q ss_pred CccccCCeEEEEccCCCCHHHHHHHHHHHhcC-CCCcccccccccCcch-----hhHHHHhhhCCCCeEEEEeeeCCCCC
Q 021463 45 GVFRNKEKVLVTCSRRINFRYRHLMLNVVSLL-PHCKKDNKVEAKSSKG-----ATLNELVELKSCSSCLFFECRKHKDL 118 (312)
Q Consensus 45 ~~~~nk~kvLI~~sr~~s~~~r~L~kDL~~Ll-P~sk~~~K~~kkn~lk-----~~i~~~a~~~~cs~~l~fe~~Kk~~~ 118 (312)
...++.+..+++.+-..+..+...|-|+..+- |.. ..+.++|+++ ..++.++++++|+..++|.+.+|+.+
T Consensus 22 klve~~k~AiF~pg~s~~k~lldvi~d~~alkkp~~---i~f~rkn~ihpfEd~SplEffseknd~~l~vl~ts~kKr~h 98 (316)
T COG5106 22 KLVEAHKDAIFYPGMSERKTLLDVICDTEALKKPKE---IGFIRKNTIHPFEDTSPLEFFSEKNDKKLSVLFTSVKKRRH 98 (316)
T ss_pred hhhhhhhheEeccCcccchhhhhhhcchhhhccchh---hccccCCcccccccCCHHHHHHHhhhhhhhhhhhhcccccc
Confidence 45677788889989899999999999999995 644 4567888875 57999999999999999999999999
Q ss_pred eEEEEeCCCC---CeEEEEEeeeEehHHHhhhCCCCCCCCCeEEEc-CCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021463 119 YLWMAKSPNG---PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFS-SNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYH 194 (312)
Q Consensus 119 ~L~i~rlP~G---PTi~F~V~n~~t~~elk~~gn~~k~srPlLvF~-~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~ 194 (312)
||.++|+++. +||+|.|.+|.+..|+..+| +..|.+|+++|+ .+|+..|.++.|++||.++|++....-....++
T Consensus 99 nlt~~R~Fny~~~DMiEl~i~~yksvsdF~~~~-~~~g~Kpmv~fQg~~fd~hp~yr~iksLflDFFrges~~~ldsagl 177 (316)
T COG5106 99 NLTIGRAFNYELIDMIELKINRYKSVSDFECAG-PELGMKPMVVFQGINFDAHPTYRRIKSLFLDFFRGESSKVLDSAGL 177 (316)
T ss_pred ceeEEeecchHHHHHHHHhhhhhhehhhhhccC-CccCCceEEEEeccccccchHHHHHHHHHHHHHcCCchhhhhhcce
Confidence 9999999999 99999999999999998876 457889999999 799999999999999999999866444444567
Q ss_pred CEEEEEEEeC----C----eEEEEEEeeeccCCCCcccccCCCcceEEEEeccceeeeeEEeec
Q 021463 195 DHVFVFSIVD----D----HIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFG 250 (312)
Q Consensus 195 drVi~F~~~d----d----~I~fRhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI~~ 250 (312)
.+||+-+.+. . .+.||.|....-++. ++.++++|.|+|||+++++.+++-
T Consensus 178 s~Vi~~t~~g~~~d~~plp~v~fRVyk~k~~kt~------~~lpr~elee~GPrldf~i~R~~~ 235 (316)
T COG5106 178 SWVIARTEEGYVLDTYPLPLVVFRVYKTKLLKTK------TNLPRLELEECGPRLDFEIVRSYH 235 (316)
T ss_pred eEEEEEecchhhhccccccceeeeeeeccccccc------CCCCceehhhcccceeeEEEeecC
Confidence 8999999853 2 389999997654322 578999999999999999999974
No 10
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=99.80 E-value=1.2e-18 Score=155.97 Aligned_cols=180 Identities=23% Similarity=0.254 Sum_probs=153.7
Q ss_pred CeEEEEccCCCCHHHHHHHHHHHhcCCCCccccccccc-CcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeC-CCC
Q 021463 51 EKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAK-SSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKS-PNG 128 (312)
Q Consensus 51 ~kvLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kk-n~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rl-P~G 128 (312)
+++||||||++|.++|+|++||..++|++.... ++ .++. .+.+.|...|.+.+++....++.|.-|.+.++ |.|
T Consensus 2 ~~~liTTSRkPS~Rtr~Fak~L~~~lp~~~~~~---rg~~~~~-el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~ 77 (191)
T COG2136 2 PKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLR---RGKKSII-ELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEG 77 (191)
T ss_pred CcEEEEecCCccHHHHHHHHHHHHhCCcceEEe---cCccchh-HHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCC
Confidence 589999999999999999999999999987643 33 3455 79999999999999999888889999999999 999
Q ss_pred CeEEEEEeeeEehHHHhhhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhc----CCCCCCCCCCCCCCCEEEEEEEeC
Q 021463 129 PSVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQI----FGTPKEHRKSKPYHDHVFVFSIVD 204 (312)
Q Consensus 129 PTi~F~V~n~~t~~elk~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~----F~~p~~~~~s~~~~drVi~F~~~d 204 (312)
|++.|.+.|+++.+++...++....+-|.++++ +|.+..+...+.++|..+ |..-. . -....|+.++.++
T Consensus 78 ~~~~f~l~~v~l~re~~~~~~~~~~~~~~~I~~-~~~~~~g~~~~~~~~~~~~~~~f~~~~-~----~~~~~v~~~~~~~ 151 (191)
T COG2136 78 LTFSFKLSGVKLRREIPVLGPKSRLHGPELIFN-NFTTLLGFLKVAEAFSELLLVKFVPNP-A----WEHELVATGANKG 151 (191)
T ss_pred ceEEEEEecceEEEeccccCCcccCCCCceeee-cccccccchhhHHHHHhhcccccccCc-c----cceeeeeeccccc
Confidence 999999999999999988876555678999996 899988877788999888 64322 1 1247899999999
Q ss_pred CeEEEEEEeeeccCCCCcccccCCCcceEEEEeccceeeeeEEeecC
Q 021463 205 DHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGG 251 (312)
Q Consensus 205 d~I~fRhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI~~G 251 (312)
+.+.||.|...+.. ..+.+.|+||||+|++-+++.|
T Consensus 152 ~f~~~~~~~~~~~~-----------~~~~~~~vgp~~~~r~~~~~~g 187 (191)
T COG2136 152 DFKSLRRHRRVFEE-----------DGIGLEEVGPRLTLRLWRMEDG 187 (191)
T ss_pred eEEEEEeeeeEeee-----------eeeeEEEeCceeeeehhhhhhc
Confidence 99999998886531 4689999999999999999988
No 11
>PRK03972 ribosomal biogenesis protein; Validated
Probab=99.72 E-value=5.6e-16 Score=139.96 Aligned_cols=178 Identities=15% Similarity=0.093 Sum_probs=135.5
Q ss_pred EEEEccCCCCHHHHHHHHHHHhcCCCCccccccccc-CcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCC---
Q 021463 53 VLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAK-SSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG--- 128 (312)
Q Consensus 53 vLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kk-n~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~G--- 128 (312)
+|||+|+++|.++++|++||..++||+.+. .++ ..++ +|.+.|..+|.+++|++...++.|+.|.|+++|+|
T Consensus 2 iLITTSr~PS~rtr~F~keL~~v~Pns~~i---~RGk~~lk-el~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~G 77 (208)
T PRK03972 2 MLITTSHRPTRRTRSFGHDLERVFPNSLYL---TRGKKTIQ-DLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWG 77 (208)
T ss_pred EEEECCCCccHHHHHHHHHHHHhCCCCEEE---ecCCccHH-HHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCC
Confidence 799999999999999999999999999764 344 4687 89999999999999999888889999999999865
Q ss_pred CeEEEEEeeeEehHHHh--hhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCC--CCC------CCCEEE
Q 021463 129 PSVKFLVNAVHTMEELK--LTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRK--SKP------YHDHVF 198 (312)
Q Consensus 129 PTi~F~V~n~~t~~elk--~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~--s~~------~~drVi 198 (312)
||++|+|+|+.+.+|+. ..|. +..+.|++|.. +|.+.+.+......+-.-++.|.+.+. |+. +.+-|+
T Consensus 78 PTa~FkLsnV~l~~ei~~~~~~~-~s~~~p~iItt-s~kt~~g~~~~Ak~lA~eLgi~yV~R~k~Sl~~L~~~~~~d~vL 155 (208)
T PRK03972 78 YLGYLYLHGIKLQREMGFRNLRP-IREDMPLVITT-AKRVGLDHMAFAQVFAELTGGKFVPRGGKSLQDIADKYNTDVLG 155 (208)
T ss_pred ceEEEEEccEEEHHHcccCCCCC-ccccccEEEEc-CCCCCHHHHHHHHHHHHHhCCceeCcCCcCHHHHHhhhcCceEE
Confidence 59999999999999993 4553 56689998885 899988664455556677777666653 321 346677
Q ss_pred EEEEeCCeEEEEEEeeeccCCCCcccccCCCcceEEEEeccceeeeeEEeecC
Q 021463 199 VFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIFGG 251 (312)
Q Consensus 199 ~F~~~dd~I~fRhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI~~G 251 (312)
++.--.-..-+-.|++...+ -.-+||-+-.+.-...+|
T Consensus 156 VV~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 193 (208)
T PRK03972 156 VIERHPRGMAVNFYRLDVTK---------------ERPVGPLIFVKIWIMEDG 193 (208)
T ss_pred EEecCCCceEEEEEEecccc---------------ccccCCcEEEEEEEeccC
Confidence 66554333456667775421 133699887776666554
No 12
>PRK00933 ribosomal biogenesis protein; Validated
Probab=97.74 E-value=0.00092 Score=59.03 Aligned_cols=114 Identities=22% Similarity=0.246 Sum_probs=73.8
Q ss_pred EEEEccCCCCHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCCCeEE
Q 021463 53 VLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPSVK 132 (312)
Q Consensus 53 vLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~GPTi~ 132 (312)
++||||++++.+++.++++|...+ ++.+.. +.+.+++ +++...+...++++...++.|..|.|...-+.+.+.
T Consensus 1 mIITTSrkPs~~t~~fAkeLa~~l-n~~yv~--Rgk~Sl~----eL~~~~~~~~llVV~E~kg~P~~L~iyd~~~~~~~~ 73 (165)
T PRK00933 1 MIITTSRKPSQRTRSLVKDLARFL-NCKYVN--RGKMSLQ----ELLEECEARYLLIIGEYKGNPGALKFYDVEGNKLLS 73 (165)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHh-CCEEEc--cCCccHH----HHHHHhccCcEEEEECCCCCCceEEEEECCCCEEEE
Confidence 479999999999999999999998 776532 2233343 444434456888787778889999999987777776
Q ss_pred EEEeeeEehHHHhhhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcC
Q 021463 133 FLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIF 181 (312)
Q Consensus 133 F~V~n~~t~~elk~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F 181 (312)
+.+. +....|... -..++.+|.+. .++.. ..-+.++|..+.
T Consensus 74 ~~~~-v~~~~~~~~--~~~~~~~p~~~---~~~~~--~~~~~e~f~~~l 114 (165)
T PRK00933 74 YRLS-VKLQREISG--PVFKNRRPIKS---AFDVG--GDELAELFDYFL 114 (165)
T ss_pred EEEE-eeeecccCc--ceeecCCCccc---chhhH--HHHHHHHHHHHH
Confidence 6664 454444432 23456677653 33321 223455555543
No 13
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=28.95 E-value=30 Score=33.58 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=17.4
Q ss_pred EEEeccceeeeeEEeecCCCC
Q 021463 234 LVEVGPRFCLNPIKIFGGSFG 254 (312)
Q Consensus 234 L~EIGPRf~L~l~kI~~G~f~ 254 (312)
-.=|||.|+|.++.||.|--.
T Consensus 186 ~~qvGP~F~lslY~lF~~~sr 206 (302)
T PF05508_consen 186 PVQVGPTFTLSLYMLFYGHSR 206 (302)
T ss_pred ccccCCcEEEEeeheeccccc
Confidence 355899999999999987753
No 14
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=27.04 E-value=1.1e+02 Score=27.71 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=39.8
Q ss_pred cceEEEEeccceeeeeEEeecCCCCCCeeeeC-CCCCCHHHHHHHHHHhhh
Q 021463 230 DKMTLVEVGPRFCLNPIKIFGGSFGGPTLYEN-PFYVSPNQIRALEKKNKA 279 (312)
Q Consensus 230 ~~v~L~EIGPRf~L~l~kI~~G~f~G~vly~n-~~~vsp~~~r~~~k~~~~ 279 (312)
.=|.|.++-|.+.+.++---..-|-|.++|.. .-|.++...+++.+-.+.
T Consensus 6 ~~V~i~~~~p~i~~DlrYat~~NF~g~~iY~~~~c~l~~~aA~aL~~a~~~ 56 (184)
T PRK10178 6 RLVEITVAFHGVEIDLKYATADNLTGKPIYREARCLLHKDAEAALRKAVSI 56 (184)
T ss_pred CcEEeeecCCCCEEEeeeccCCCcCCCccccCCeEEECHHHHHHHHHHHHH
Confidence 35789999999999999999999999999964 456777776666554443
No 15
>PRK03972 ribosomal biogenesis protein; Validated
Probab=23.05 E-value=5.6e+02 Score=23.59 Aligned_cols=73 Identities=12% Similarity=0.226 Sum_probs=44.6
Q ss_pred EEEEccCCCCHHHHHHHHHHHhcC--CCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEe------
Q 021463 53 VLVTCSRRINFRYRHLMLNVVSLL--PHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAK------ 124 (312)
Q Consensus 53 vLI~~sr~~s~~~r~L~kDL~~Ll--P~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~r------ 124 (312)
.+||++.+++.......+.+...+ |+.. + +.. ++.+++...++..+++++..- +...+.+-|
T Consensus 107 ~iItts~kt~~g~~~~Ak~lA~eLgi~yV~------R-~k~--Sl~~L~~~~~~d~vLVV~~~~-~~~~~~~~~~~~~~~ 176 (208)
T PRK03972 107 LVITTAKRVGLDHMAFAQVFAELTGGKFVP------R-GGK--SLQDIADKYNTDVLGVIERHP-RGMAVNFYRLDVTKE 176 (208)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCceeC------c-CCc--CHHHHHhhhcCceEEEEecCC-CceEEEEEEeccccc
Confidence 588889999998889999988865 4332 1 222 466666656667766664332 223344444
Q ss_pred CCCCCeEEEEE
Q 021463 125 SPNGPSVKFLV 135 (312)
Q Consensus 125 lP~GPTi~F~V 135 (312)
-|=||.+..++
T Consensus 177 ~~~~~~~~~~~ 187 (208)
T PRK03972 177 RPVGPLIFVKI 187 (208)
T ss_pred cccCCcEEEEE
Confidence 25566665554
Done!