Query 021463
Match_columns 312
No_of_seqs 173 out of 813
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 04:30:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021463.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021463hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cxh_A Probable BRIX-domain ri 99.9 2E-25 6.7E-30 202.2 15.7 133 49-187 32-168 (217)
2 1w94_A MIL, probable BRIX-doma 99.1 3.4E-10 1.2E-14 97.4 9.2 128 52-206 1-129 (156)
3 1f32_A Major pepsin inhibitor 7.1 3.2E+02 0.011 22.6 3.1 41 247-287 74-119 (149)
4 3fkh_A Putative pyridoxamine 5 6.1 7.3E+02 0.025 19.4 4.9 37 198-249 39-75 (138)
5 1y5o_A TFB1, RNA polymerase II 5.7 8.8E+02 0.03 19.1 5.0 75 103-180 11-107 (115)
6 1kdl_A YOPD protein; yersinia, 5.5 1.5E+02 0.0052 17.4 0.3 10 67-76 2-11 (26)
7 3dlo_A Universal stress protei 5.5 8.3E+02 0.028 18.6 4.9 31 93-123 107-137 (155)
8 1mjh_A Protein (ATP-binding do 5.0 3.7E+02 0.013 20.5 2.4 23 93-115 110-132 (162)
9 3mtn_B UBA80, ubcep1, ubiquiti 5.0 4.7E+02 0.016 17.8 2.8 24 122-145 7-30 (85)
10 3j0f_I E2 envelope glycoprotei 4.9 4.4E+02 0.015 25.4 3.2 21 117-137 97-117 (423)
No 1
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=99.93 E-value=2e-25 Score=202.23 Aligned_cols=133 Identities=15% Similarity=0.159 Sum_probs=121.7
Q ss_pred cCCeEEEEccCCCCHHHHHHHHHHHhcCCCCcccccccccCcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCC
Q 021463 49 NKEKVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAKSSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNG 128 (312)
Q Consensus 49 nk~kvLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kkn~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~G 128 (312)
-++|+||||||++|.++++|++||..++||+.+..+ .+..++ +|++.|..++|+++|+++.+++.|.+|||+++|+|
T Consensus 32 ~~pKvLITTSr~pS~r~r~fakeL~~~lPns~~i~R--gk~sLk-eL~e~a~~~~~tdlivV~e~rg~p~~L~~~hlP~G 108 (217)
T 2cxh_A 32 GGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTR--GHYSME-ELAREAIIRGADRIVVVGERRGNPGIIRVYAVEGP 108 (217)
T ss_dssp -CCEEEEEESSSCCHHHHHHHHHHHTTSTTEEECCC--TTCCHH-HHHHHHHHTTEEEEEEEEEETTEEEEEEEEECCSS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHHHCCCCEEeec--CCcCHH-HHHHHHHhCCCCEEEEEEecCCCCcEEEEEECCCC
Confidence 378999999999999999999999999999976532 345687 89999999999999999999988999999999999
Q ss_pred ---C-eEEEEEeeeEehHHHhhhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCC
Q 021463 129 ---P-SVKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEH 187 (312)
Q Consensus 129 ---P-Ti~F~V~n~~t~~elk~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~ 187 (312)
| |++|+|+|+++++|++.+|||+.+++|.|+ .+|++. ++.++++||+++|+.|..+
T Consensus 109 ~~~P~Ta~F~I~nv~l~~ei~~~g~~~~~~rP~L~--~nF~t~-~g~~i~~~f~~lFp~P~~~ 168 (217)
T 2cxh_A 109 ERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVA--RPLDSG-VAVEFADAFVIAFHARLKP 168 (217)
T ss_dssp SCCEEEEEEEEEEEECHHHHTCCCCCCCSCCEEEE--EESSSS-THHHHHHHHHHHHCCBSSC
T ss_pred CCCCcEEEEEEeeEEehhhhccCCCccCCCCceEE--eeecCc-hHHHHHHHHHHHcCCCCCC
Confidence 9 999999999999999999999999999999 589987 7889999999999998863
No 2
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=99.08 E-value=3.4e-10 Score=97.43 Aligned_cols=128 Identities=9% Similarity=0.023 Sum_probs=85.7
Q ss_pred eEEEEccCCCCHHHHHHHHHHHhcCCCCccccccccc-CcchhhHHHHhhhCCCCeEEEEeeeCCCCCeEEEEeCCCCCe
Q 021463 52 KVLVTCSRRINFRYRHLMLNVVSLLPHCKKDNKVEAK-SSKGATLNELVELKSCSSCLFFECRKHKDLYLWMAKSPNGPS 130 (312)
Q Consensus 52 kvLI~~sr~~s~~~r~L~kDL~~LlP~sk~~~K~~kk-n~lk~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~rlP~GPT 130 (312)
|+|||||+++|.++++++++|..++ ++.+- .|+ ..++ +|.+.|.. . ++++..+++.|..|.++++|+|||
T Consensus 1 kilITTSr~Ps~~l~~fakeLa~~l-n~~~v---~Rgk~sl~-~L~~~~~~---~-~iVV~e~rg~P~~l~i~hlp~gpt 71 (156)
T 1w94_A 1 HMLLTTSRKPSQRTRSFSQRLSRIM-GWRYI---NRGKMSLR-DVLIEARG---P-VAVVSERHGNPARITFLDERGGER 71 (156)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHHH-TCEEC---CCTTCCHH-HHHHHHSS---C-EEEEEEETTEEEEEEEECTTSCEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh-CCEEE---eeCCcCHH-HHHHhcCC---C-EEEEEcCCCCCCeEEEEeCCCCCE
Confidence 5799999999999999999999998 77663 333 3465 56665643 2 555444555689999999999999
Q ss_pred EEEEEeeeEehHHHhhhCCCCCCCCCeEEEcCCCCCchhHHHHHHHHHhcCCCCCCCCCCCCCCCEEEEEEEeCCe
Q 021463 131 VKFLVNAVHTMEELKLTGNHLKASRPLLTFSSNFGKDAHWKLIKEMIIQIFGTPKEHRKSKPYHDHVFVFSIVDDH 206 (312)
Q Consensus 131 i~F~V~n~~t~~elk~~gn~~k~srPlLvF~~~F~~~~hlklik~lf~~~F~~p~~~~~s~~~~drVi~F~~~dd~ 206 (312)
++|.+ |+.+.+|+... . ... +++. + ..+.+. .|..+|+.|..... .++|++|...++.
T Consensus 72 ~~f~~-nv~l~~~~~~~----~-~~~-v~~~--~-~~~~~~----~l~~~~~~~~~~~~----~~~~~~i~~~~~~ 129 (156)
T 1w94_A 72 GYILF-NPSFEMKKPEL----A-DKA-VRVS--S-CPPGSE----GLCNLMGLEVDESS----SRDAWSIRTDEEY 129 (156)
T ss_dssp EEEEE-EEEECSSCCCC----S-SCC-CEES--C-CCTTCH----HHHHHHTCEECCSC----CTTEEEEECCSSS
T ss_pred EEEEE-ceEEcccCccc----C-Cce-EEEe--c-CChhHH----HHHHHHCCCccCCC----CceEEEEEeCCCc
Confidence 99999 99999997522 1 122 3332 2 234443 44455554443211 2678888644433
No 3
>1f32_A Major pepsin inhibitor PI-3; proteinase inhibitor, hydrolase inhibitor; 1.75A {Ascaris suum} SCOP: d.62.1.1 PDB: 1f34_B*
Probab=7.12 E-value=3.2e+02 Score=22.60 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=27.2
Q ss_pred EeecCCC-CCCeeeeCCCC---CCHHHHHHHHH-HhhhhHHHHHHH
Q 021463 247 KIFGGSF-GGPTLYENPFY---VSPNQIRALEK-KNKAGKYAKKVK 287 (312)
Q Consensus 247 kI~~G~f-~G~vly~n~~~---vsp~~~r~~~k-~~~~~k~~~~~~ 287 (312)
-+|+|+. .|++||-|-.| .|+.|++++.. .++...|.+|++
T Consensus 74 y~FdGCvVqnNKlY~gg~~~RdLT~~Eq~EL~~y~~k~~a~eer~e 119 (149)
T 1f32_A 74 FNFVGCSVLGNKLFIDQKYVRDLTAKDHAEVQTFREKIAAFEEQQE 119 (149)
T ss_dssp EEETTEEEETTEEEETTEEEEECCHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEEeeeEEEcCEEEECCEeeccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778876 48899998777 68999988764 333445554433
No 4
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032}
Probab=6.09 E-value=7.3e+02 Score=19.45 Aligned_cols=37 Identities=11% Similarity=0.200 Sum_probs=21.5
Q ss_pred EEEEEeCCeEEEEEEeeeccCCCCcccccCCCcceEEEEeccceeeeeEEee
Q 021463 198 FVFSIVDDHIWFRNYQITVPHNESDKVARGGLDKMTLVEVGPRFCLNPIKIF 249 (312)
Q Consensus 198 i~F~~~dd~I~fRhY~I~~~~~e~e~~~~~~~~~v~L~EIGPRf~L~l~kI~ 249 (312)
+.|-+.++.|||+.-. - .++....-+|+.+|.+..+.
T Consensus 39 v~f~~~~~~iyfh~a~-g--------------~K~~~i~~~~~V~f~vd~~~ 75 (138)
T 3fkh_A 39 VNFIVDKGAIYIRTAE-G--------------NKLFSMNLNHDVLFEADEVK 75 (138)
T ss_dssp EEEEEETTEEEEEEEC-----------------------CCSEEEEEEEEEE
T ss_pred EEEEEECCEEEEEeCC-C--------------hHHHHhhcCCCEEEEEEECC
Confidence 4566678999997421 1 24555667899998888764
No 5
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=5.74 E-value=8.8e+02 Score=19.15 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=44.6
Q ss_pred CCCeEEEEeeeCCCCCeEEEEeCCCCCeEEEEEeeeEehHHHh----------------------hhCCCCCCCCCeEEE
Q 021463 103 SCSSCLFFECRKHKDLYLWMAKSPNGPSVKFLVNAVHTMEELK----------------------LTGNHLKASRPLLTF 160 (312)
Q Consensus 103 ~cs~~l~fe~~Kk~~~~L~i~rlP~GPTi~F~V~n~~t~~elk----------------------~~gn~~k~srPlLvF 160 (312)
..+-+|.++.......-.|.. +..++++..-+.++..+..=. ..|+...+...-.+|
T Consensus 11 Kk~G~lti~eD~~p~~l~W~p-~~g~~~isI~l~~It~LQqTp~ts~KvmLKI~~k~~~~~~~~~~~~~~~~~~p~~~~F 89 (115)
T 1y5o_A 11 KVSGIIAINEDVSPAELTWRS-TDGDKVHTVVLSTIDKLQATPASSEKMMLRLIGKVDESKKRKDNEGNEVVPKPQRHMF 89 (115)
T ss_dssp SCEEEEEEECSSSSCEEEEEE-SSSSCEEEEESTTCSEEEECCTTCSSEEEEEEECSCCSSSCCCCSSCCSSCCCEEEEE
T ss_pred ecccEEEEccCCCcceEEEEE-CCCCccEEEEhhhhhhhhcCCCCCCceEEEEEEeccccccccCCCcCCCCCCcceEEE
Confidence 345566666555444557777 555788888887776432111 011122233334667
Q ss_pred cCCCCCchhHHHHHHHHHhc
Q 021463 161 SSNFGKDAHWKLIKEMIIQI 180 (312)
Q Consensus 161 ~~~F~~~~hlklik~lf~~~ 180 (312)
.|++.+...-||..|+.+
T Consensus 90 --~FtnR~~~d~IKd~Lq~i 107 (115)
T 1y5o_A 90 --SFNNRTVMDNIKMTLQQI 107 (115)
T ss_dssp --EESCHHHHHHHHHHHHHH
T ss_pred --EeCCHHHHHHHHHHHHHH
Confidence 578888888888888764
No 6
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=5.52 E-value=1.5e+02 Score=17.42 Aligned_cols=10 Identities=30% Similarity=0.647 Sum_probs=7.5
Q ss_pred HHHHHHHhcC
Q 021463 67 HLMLNVVSLL 76 (312)
Q Consensus 67 ~L~kDL~~Ll 76 (312)
.||+|+.+||
T Consensus 2 nfMkDvlql~ 11 (26)
T 1kdl_A 2 NFMKDVLRLI 11 (26)
T ss_dssp THHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 4788888876
No 7
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=5.49 E-value=8.3e+02 Score=18.64 Aligned_cols=31 Identities=3% Similarity=-0.023 Sum_probs=22.6
Q ss_pred hhHHHHhhhCCCCeEEEEeeeCCCCCeEEEE
Q 021463 93 ATLNELVELKSCSSCLFFECRKHKDLYLWMA 123 (312)
Q Consensus 93 ~~i~~~a~~~~cs~~l~fe~~Kk~~~~L~i~ 123 (312)
+.|.++|...+++.++++......-..+++|
T Consensus 107 ~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lG 137 (155)
T 3dlo_A 107 DDIVDFADEVDAIAIVIGIRKRSPTGKLIFG 137 (155)
T ss_dssp HHHHHHHHHTTCSEEEEECCEECTTSCEECC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCEEec
Confidence 4799999999999999997655433334443
No 8
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=5.05 E-value=3.7e+02 Score=20.51 Aligned_cols=23 Identities=9% Similarity=0.052 Sum_probs=19.3
Q ss_pred hhHHHHhhhCCCCeEEEEeeeCC
Q 021463 93 ATLNELVELKSCSSCLFFECRKH 115 (312)
Q Consensus 93 ~~i~~~a~~~~cs~~l~fe~~Kk 115 (312)
+.|.++|...+++.++++++...
T Consensus 110 ~~I~~~a~~~~~dlIV~G~~g~~ 132 (162)
T 1mjh_A 110 EEIVKIAEDEGVDIIIMGSHGKT 132 (162)
T ss_dssp HHHHHHHHHTTCSEEEEESCCSS
T ss_pred HHHHHHHHHcCCCEEEEcCCCCC
Confidence 47999999999999999976543
No 9
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=5.00 E-value=4.7e+02 Score=17.78 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=14.0
Q ss_pred EEeCCCCCeEEEEEeeeEehHHHh
Q 021463 122 MAKSPNGPSVKFLVNAVHTMEELK 145 (312)
Q Consensus 122 i~rlP~GPTi~F~V~n~~t~~elk 145 (312)
..+.++|-++.+.|..-.|..+|+
T Consensus 7 ~vk~~~g~~~~~~v~~~~tV~~lK 30 (85)
T 3mtn_B 7 FVKTLTGKTITLEVEPSDTIENVK 30 (85)
T ss_dssp EEECTTSCEEEEEECTTCBHHHHH
T ss_pred EEEcCCCCEEEEEECCCCCHHHHH
Confidence 355666766666665555555554
No 10
>3j0f_I E2 envelope glycoprotein; alphavirus, virus assembly; 7.00A {Sindbis virus} PDB: 1z8y_J
Probab=4.93 E-value=4.4e+02 Score=25.45 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=17.5
Q ss_pred CCeEEEEeCCCCCeEEEEEee
Q 021463 117 DLYLWMAKSPNGPSVKFLVNA 137 (312)
Q Consensus 117 ~~~L~i~rlP~GPTi~F~V~n 137 (312)
.-|..++++|.|++++..+..
T Consensus 97 ~GyFiLA~CPpGdsitV~f~~ 117 (423)
T 3j0f_I 97 KGYFLLAKCPPGDSVTVSIVS 117 (423)
T ss_pred cceEEEEECcCCCeEEEEEEc
Confidence 468999999999988877754
Done!