RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 021464
(312 letters)
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 181 bits (462), Expect = 6e-57
Identities = 68/175 (38%), Positives = 98/175 (56%), Gaps = 3/175 (1%)
Query: 108 RLLMWILGNPVKIEGTE--FADKRAIYISNHASPIDIFLLMWLTPTGTVGIAKKEIIWYP 165
RLL+ +LG V++EG E I ++NH S +D +L P +AKKE+ P
Sbjct: 2 RLLLRLLGVRVRVEGLENLPPKGPVIIVANHQSYLDPLVLGAALPRPIRFVAKKELFKIP 61
Query: 166 LFGQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKG 225
G L L I IDR N +A ++L+EA A+ K+ S++IFPEGTRS++G LLPFK G
Sbjct: 62 FLGWLLRLLGAIPIDRGNGRSAREALREAIEAL-KEGESVVIFPEGTRSRDGELLPFKSG 120
Query: 226 FVHMALQSRLPIVPIVLSGTHRAWRKGSLHIRPVPITVKYLPPISTSDWTADKLD 280
+A ++ +PIVP+ +SGT + KG RP +TV+ PI + D
Sbjct: 121 AFRLAKEAGVPIVPVAISGTWGSLPKGKKLPRPGRVTVRIGEPIPPEGLELAEED 175
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 145 bits (367), Expect = 5e-42
Identities = 70/237 (29%), Positives = 107/237 (45%), Gaps = 16/237 (6%)
Query: 78 TFVWAIVMLLLLPWPYQRIRQG-----NIYGHVTGRLLMWILGNPVKIEGTE--FADKRA 130
+ + +LL LP + + + LL+ + G V++EG E A
Sbjct: 7 LILVILFLLLPLPLALIALFRLRRPVLRRWLRFLVLLLLLLFGLRVEVEGLENLPKGGPA 66
Query: 131 IYISNHASPIDIFLLMWLTPT--GTVGIAKKEIIWYPLFGQLYVLAKHIRIDRSNPSAAI 188
+ ++NH S +D LL P +AKKE+ PL G L L I +DR NP
Sbjct: 67 LVVANHQSFLDPLLLSLALPRRGPVRFVAKKELFKVPLLGWLLRLLGAIPVDRENPDDE- 125
Query: 189 QSLKEAAHAIVKDNLSLIIFPEGTRSQNGR-LLPFKKGFVHMALQSRLPIVPIVLSGTHR 247
+L+ A + SL+IFPEGTRS+ G LLPFK+G +AL++ +PIVP+ + G
Sbjct: 126 -TLRAAVARLKAGGRSLVIFPEGTRSRGGEELLPFKRGAARLALEAGVPIVPVAIVGAEE 184
Query: 248 AWRKGSLHIRPVPITVKYLPPISTSDWTADKLDDYIKMVHDMYVKNLPEPQKPYASD 304
+ + V+ PPI S L + + V + L E YA++
Sbjct: 185 LFPSLK----KGKVKVRIGPPIDISALPEPLLPELAEAVEQLARPILLELLPRYAAE 237
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 136 bits (344), Expect = 5e-40
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Query: 117 PVKIEGTEF--ADKRAIYISNHASPIDIFLLMWLTPTG---TVGIAKKEIIWYPLFGQLY 171
V++ G E AI ++NH S +D LL L P V +AK E++ PL G L
Sbjct: 1 RVRVHGLENLPRGGPAIVVANHQSYLDPLLLSLLLPKRGRPLVFVAKDELLNLPLLGWLM 60
Query: 172 VLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMAL 231
L I IDR N A +L+ + + L ++IFPEGTRS+ G LLPFKKG +A
Sbjct: 61 RLLGCIFIDRKNAKDAANTLEYLVELLREGEL-VLIFPEGTRSRGGELLPFKKGAFRLAR 119
Query: 232 QSRLPIVPIVLS 243
++ +PIVP+ +S
Sbjct: 120 EAGVPIVPVAIS 131
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 128 bits (324), Expect = 4e-37
Identities = 53/119 (44%), Positives = 74/119 (62%), Gaps = 4/119 (3%)
Query: 130 AIYISNHASPIDIFLLMWLTP---TGTVGIAKKEIIWYPLFGQLYVLAKHIRIDRSNPSA 186
A+ ++NH S +D +L L P +AKKE+ + PL G L L I IDRSN
Sbjct: 1 ALVVANHQSFLDPLVLSALLPRKLGRVRFVAKKELFYVPLLGWLLRLLGAIFIDRSNGRK 60
Query: 187 AIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMALQSRLPIVPIVLSGT 245
A +L+EA + K+ L+IFPEGTRS+ G+LLPFKKG +AL++ +PIVP+ + GT
Sbjct: 61 ARAALREAVELL-KEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIVPVAIRGT 118
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 114 bits (287), Expect = 1e-31
Identities = 53/128 (41%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
Query: 118 VKIEGTEF--ADKRAIYISNHASPIDIFLLMWLTPTGTVGIAKKEIIWYPLFGQLYVLAK 175
V++ G E A + ++NH S +D L P V IAKKE+ W P FG + L
Sbjct: 4 VEVVGPENLPAKSPVLVVANHQSNLDPLTLSAAFPPPIVFIAKKELKWIPFFGIMLWLTG 63
Query: 176 HIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMALQSRL 235
I IDR N AI + +AA ++K S+ +FPEGTRS+ +LPFKKG H+A+++ +
Sbjct: 64 AIFIDREN-IRAIATALKAAIEVLKQGRSIGVFPEGTRSRGRDILPFKKGAFHIAIKAGV 122
Query: 236 PIVPIVLS 243
PI+P+VLS
Sbjct: 123 PILPVVLS 130
>gnl|CDD|184979 PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase;
Provisional.
Length = 245
Score = 108 bits (272), Expect = 3e-28
Identities = 67/182 (36%), Positives = 101/182 (55%), Gaps = 9/182 (4%)
Query: 102 YGHVTGRLLMWILGNPVKIEGTEFADKR----AIYISNHASPIDIFLLMWLTPTGTVGIA 157
+GH+ GRL + G +K+E + AD AIYI+NH + D+ + TV +
Sbjct: 38 FGHMFGRLAP-LFG--LKVECRKPADAESYGNAIYIANHQNNYDMVTASNIVQPPTVTVG 94
Query: 158 KKEIIWYPLFGQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNG 217
KK ++W P FGQLY L ++ IDR+N + A ++ E + K +S+ +FPEGTRS+
Sbjct: 95 KKSLLWIPFFGQLYWLTGNLLIDRNNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGR 154
Query: 218 RLLPFKKGFVHMALQSRLPIVPIVLSGTHRAWRKGSLHIRPVPITVKYLPPISTSDWTAD 277
LLPFK G H A+ + +PI+P+ +S T LH V V+ LPPI S + D
Sbjct: 155 GLLPFKTGAFHAAIAAGVPIIPVCVSTTSNKINLNRLHNGLV--IVEMLPPIDVSQYGKD 212
Query: 278 KL 279
++
Sbjct: 213 QV 214
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 93.6 bits (233), Expect = 7e-23
Identities = 59/167 (35%), Positives = 89/167 (53%), Gaps = 8/167 (4%)
Query: 117 PVKIEGTEF---ADKRAIYISNHASPIDIFLLMWLTPTGTVGIAKKEIIWYPLFGQLYVL 173
+++EG E D+ A+Y+SNH S +DI+ L L I+K I P+ G +
Sbjct: 36 KIEVEGLENLPSPDEPAVYVSNHQSFLDIYTLFHLGRPFKF-ISKTSIFLIPIIGWAMYM 94
Query: 174 AKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMALQS 233
HI + R + + ++ LK ++K S+ FPEGTRS++G+L FKKG +A ++
Sbjct: 95 TGHIPLKRMDRRSQLECLKRCME-LLKKGASVFFFPEGTRSKDGKLAAFKKGAFSVAAKT 153
Query: 234 RLPIVPIVLSGTHRAWRKGSLHI-RPVPITVKYLPPISTSDWTADKL 279
+P+VPI L GT + G I P + V PPI SD AD+L
Sbjct: 154 GVPVVPITLVGTGKIMPNGKEGILNPGSVKVVIHPPIEGSD--ADEL 198
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 89.8 bits (223), Expect = 1e-21
Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 20/184 (10%)
Query: 108 RLLMWILGNPVKIEGT----EFADKRAIYISNHASPIDIFLLM-----WLTPTGTVGIAK 158
R L+ V++E +++SNH+S D +L L + +
Sbjct: 2 RYLLLNFFGFVRLEVKGPPPPPGGGPVLFVSNHSSWWDGLILFLLLERGLRRDVYGLMDE 61
Query: 159 KEIIWYPLFGQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRS-QNG 217
+ + YP F +L +DR +P +A +SLK A + K + IFPEGTR+ ++
Sbjct: 62 ELLERYPFFTRLGA----FSVDRDSPRSAAKSLKYVARLLSKPGSVVWIFPEGTRTRRDK 117
Query: 218 RLLPFKKGFVHMALQSRLPIVPIVLSGTHRAWRKGSLHIRPVPITVKYLPPISTSDWTAD 277
R L FK G H+A ++ +PIVP+ L T L + I V+ PPI ++
Sbjct: 118 RPLQFKPGVAHLAEKAGVPIVPVALRYTF------ELFEQFPEIFVRIGPPIPYAETALG 171
Query: 278 KLDD 281
+
Sbjct: 172 EELA 175
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 88.4 bits (220), Expect = 7e-21
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 108 RLLMWILGNP-VKIEGTEFADKRA-IYISNHASPIDIFLLM-WLTPTGTVGIAKKEIIWY 164
R+L++ G +K+ G + I ++NH S ID +L L P+ +AKKE+
Sbjct: 2 RVLLFAFGFYVIKVHGKPDPPEAPRIIVANHTSFIDPLILFSDLFPSI---VAKKELGKL 58
Query: 165 PLFGQLYVLAKHIRIDRSNPS---AAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLP 221
P G + I +DRS P ++ +KE A + ++IFPEGT + L+
Sbjct: 59 PFIGTILRALGCIFVDRSEPKDRKKVVEEIKERATD--PNWPPILIFPEGTTTNGKALIM 116
Query: 222 FKKGFVHMALQSRLPIVPIVL 242
FKKG A + +P+ P+ +
Sbjct: 117 FKKG----AFEPGVPVQPVAI 133
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 71.5 bits (176), Expect = 6e-15
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 109 LLMWILGNPVKIEGTEFADK--RAIYISNHASPIDIFLLMWL-TPTGTVG----IAKKEI 161
L W+ G V + G E RA+ ISNH S +D +L L G +G + K +
Sbjct: 3 LFEWLSGVKVVVYGDEPKLPKERALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDSL 62
Query: 162 IWYPLFGQLYVLAKHIRIDRSNP------SAAIQSLKEAAHAIVKDNLSLIIFPEGTR 213
+ PL G + L + I + R ++ LK+ + L+IFPEGTR
Sbjct: 63 KYPPLGGWGWQLGEFIFLKRKWEKDEKTIKRQLKRLKD-----SPEPFWLLIFPEGTR 115
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 71.9 bits (177), Expect = 6e-14
Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 27/199 (13%)
Query: 58 ISVLISYVRI--VTCFVTMMVTTFVWAIVMLLLLPWPYQRIRQGNIYGHVTGRLLMWIL- 114
++ L S + + F + + T + + LLLLP R L+ +L
Sbjct: 377 LTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLP-------------DSLLRFLLLLLM 423
Query: 115 --GNPVKIEGTEF--ADKRAIYISNHASPIDIFLLMWLTPTGTVGIAKKEIIWYPLFGQL 170
+++EG E A A+ + NH S ID LL +P + ++ I
Sbjct: 424 HTRYRLRVEGRENIPAKGGALLLGNHVSWIDWALLQAASPRPIRFVMERSIYEKWYLKWF 483
Query: 171 YVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMA 230
+ L I I +++ +++A + D + IFPEG ++NG+L FK+GF +
Sbjct: 484 FKLFGVIPISSGGSKESLEFIRKA----LDDGEVVCIFPEGAITRNGQLNEFKRGFELIV 539
Query: 231 LQSRLPIVPIVLSGTHRAW 249
+ +PI+P + G W
Sbjct: 540 KGTDVPIIPFYIRG---LW 555
>gnl|CDD|153250 cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ABO13168. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Acinetobacter baumannii ATCC 17978 locus ABO13168
putative acyltransferase, and similar proteins.
Length = 163
Score = 63.8 bits (156), Expect = 2e-12
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 14/141 (9%)
Query: 107 GRLLMWILGNPVKIEGTEFADKRA--IYISNHASPID---IFLLMWLTPTGTVGIAKKEI 161
RLL+ + G +IEG E +K + + H S D L + + K +
Sbjct: 1 ARLLLRLSG--WRIEG-EPPNKPKFVVIGAPHTSNWDFVLGLLAAFALGLKISFLGKHSL 57
Query: 162 IWYPLFGQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLP 221
P G I +DRS ++ + E ++ L I PEGTRS+ +
Sbjct: 58 FKPP-LGPFMRWLGGIPVDRSRAGGLVEQVVEEFRR--REEFVLAIAPEGTRSKVDK--- 111
Query: 222 FKKGFVHMALQSRLPIVPIVL 242
+K GF H+A + +PI+ + L
Sbjct: 112 WKTGFYHIARGAGVPILLVYL 132
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 66.9 bits (164), Expect = 3e-12
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 32/217 (14%)
Query: 65 VRIVTCFVTMMVTTFVWAIVMLLLLPWPYQRIRQGNIYGHVTGRLLMWILGNPVKIEGTE 124
I + + + + AI++L L P +R + R V+++G E
Sbjct: 398 FSIPWIILFIALANLIVAILILRL--LPTNLLRD---IFSILFRAFY-----RVEVKGLE 447
Query: 125 F---ADKRAIYISNHASPIDIFLLMWLTPTGTV-----GIAKKEIIWYPLFGQLYVLAKH 176
A K+A+ +NH S +D LL P IAK W F LAK
Sbjct: 448 NLQKAGKKAVIAANHVSFLDGPLLAAYLPEEPTFAIDTDIAKA--WWVKPF---LKLAKA 502
Query: 177 IRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMALQSRLP 236
+ +D +NP A ++L + V+ L+IFPEG + G L+ G +A ++
Sbjct: 503 LPVDPTNPMA-TRTLIKE----VQKGEKLVIFPEGRITVTGSLMKIYDGPGMIADKAGAM 557
Query: 237 IVPIVLSG---THRAWRKGSLHIRPVP-ITVKYLPPI 269
+VP+ + G TH + K + + P +TV LPP+
Sbjct: 558 VVPVRIDGLQFTHFSRLKNQVRRKWFPKVTVTILPPV 594
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 60.4 bits (147), Expect = 6e-11
Identities = 47/192 (24%), Positives = 73/192 (38%), Gaps = 23/192 (11%)
Query: 107 GRLLMWILGNPVKIEGTE--FADKRAIYISNHA-SPIDIFLLMWLTPTGTVGIAKKEIIW 163
R+++ I + + G E D I++ NH + ID LL +AK ++
Sbjct: 5 SRVILRIYFRRITVVGRENVPKDGPVIFLGNHPNALIDPLLLAATLRRPVRFLAKADLFK 64
Query: 164 YPLFGQLYVLAKHIRIDR-----SNPSAAIQSLK--EAAHAIVKDNLSLIIFPEGTRSQN 216
PL G L I + R I + +A +K ++ IFPEG
Sbjct: 65 NPLIGWLLESFGAIPVYRPKDLARGGIGKISNAAVFDAVGEALKAGGAIGIFPEGGSHDR 124
Query: 217 GRLLPFKKGFVHMAL------QSRLPIVPIVLSGTHRAWRKGSLHIRPVPITVKYLPPIS 270
RLLP K G MAL Q + IVP+ L+ + + V++ PIS
Sbjct: 125 PRLLPLKAGAARMALEALEAGQKDVKIVPVGLNYEDK-------SRFRSRVLVEFGKPIS 177
Query: 271 TSDWTADKLDDY 282
S + +
Sbjct: 178 VSAFEEAEASRD 189
>gnl|CDD|153249 cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
suubgroup are such LPLATs as 2-acylglycerol
O-acyltransferase (MGAT), and similar proteins.
Length = 212
Score = 47.7 bits (114), Expect = 1e-06
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 26/138 (18%)
Query: 127 DKRAIYISNH-ASPIDIFLLMWLTPTGTVGIAKKEIIWYPLFGQLYVLAKHIRIDRSNPS 185
+ A+ + H PID LL A +++ LA H
Sbjct: 19 EGPALLVHPHGGLPIDGALLA----------AAFLLLFPGR--LPRALADHFLFPLPGLR 66
Query: 186 AAIQSL------KEAAHAIVKDNLSLIIFPEGTR-------SQNGRLLPFKKGFVHMALQ 232
++ L +E ++++ ++IFP G R + L +KGF +AL+
Sbjct: 67 DLLRRLGAVPGSRENCVRLLREGELVLIFPGGAREALKSKREEYYLLWKKRKGFARLALR 126
Query: 233 SRLPIVPIVLSGTHRAWR 250
+ PIVP+ G +R
Sbjct: 127 AGAPIVPVFTFGEEELFR 144
>gnl|CDD|215447 PLN02833, PLN02833, glycerol acyltransferase family protein.
Length = 376
Score = 43.6 bits (103), Expect = 6e-05
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 128 KRAIYISNHASPIDIFLLMWLTPTGTVGIAKKEIIWYPLFGQLYVLAKH-IRIDR--SNP 184
+ ++++NH S ID +L +TP I +K W + + I +R +
Sbjct: 163 PKQVFVANHTSMIDFIVLEQMTPFAV--IMQKHPGWVGFLQNTILESVGCIWFNRTEAKD 220
Query: 185 SAAIQS-LKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKG 225
+ L++ H D L+IFPEGT N + FKKG
Sbjct: 221 REVVAKKLRD--HVQDPDRNPLLIFPEGTCVNNEYTVMFKKG 260
>gnl|CDD|240337 PTZ00261, PTZ00261, acyltransferase; Provisional.
Length = 355
Score = 43.3 bits (102), Expect = 8e-05
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 13/131 (9%)
Query: 132 YISNHASPIDIFLLMWLTPT----GTVGIAKKEIIWYPLFGQLYVLAKHIRIDRSNPSAA 187
Y+ NH S D++ + LTP T + K + P+FG ++ H + + S
Sbjct: 133 YVGNHTSFWDVYAFIGLTPFRHLLNTRTLMKSSLRKIPIFGGVFDRVGHFPVHFKSDSDG 192
Query: 188 IQSLKEAAHAIVKDNL--------SLIIFPEGTRSQNGR-LLPFKKGFVHMALQSRLPIV 238
+ + A V+ + SL FPEG +++ + L F+ G ++ R+ +
Sbjct: 193 NFEVDKEKQAQVQQAIDAHLRLGGSLAFFPEGAINKHPQVLQTFRYGTFATIIKHRMEVY 252
Query: 239 PIVLSGTHRAW 249
+V G+ + W
Sbjct: 253 YMVSVGSEKTW 263
>gnl|CDD|153255 cd07993, LPLAT_DHAPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are such LPLATs as dihydroxyacetone phosphate
acyltransferase (DHAPAT, also known as 1
glycerol-3-phosphate O-acyltransferase 1) and similar
proteins.
Length = 205
Score = 42.2 bits (100), Expect = 1e-04
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Query: 191 LKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMALQSRLP-------IVPIVLS 243
L+E ++K+ L F EGTRS+ G+LLP K G + + +++ L IVP+ +S
Sbjct: 90 LQEYVQELLKNGQPLEFFIEGTRSRTGKLLPPKLGLLSVVVEAYLKGSVPDVLIVPVSIS 149
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 43.2 bits (102), Expect = 1e-04
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 21/164 (12%)
Query: 118 VKIEG--TEFADKRAIYISNHASPIDIFLLMWLTPTGTV-----GIAKKEIIWYPLFGQL 170
V++ G +R + NH S +D LL P V I+++ WY + +
Sbjct: 16 VRVTGDTQALKGERVLITPNHVSFLDGILLALFLPVRPVFAVYTSISQQ---WYMRWLKP 72
Query: 171 YVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMA 230
Y+ + +D + P A ++ V+ ++IFPEG + G L+ G +A
Sbjct: 73 YI--DFVPLDPTKPMAIKHLVRL-----VEQGRPVVIFPEGRITVTGSLMKIYDGAGFVA 125
Query: 231 LQSRLPIVPIVLSG---THRAWRKGSLHIRPVP-ITVKYLPPIS 270
+S ++P+ + G TH + KG + R P IT+ LPP
Sbjct: 126 AKSGATVIPVRIEGAELTHFSRLKGLVKRRLFPQITLHILPPTQ 169
>gnl|CDD|153248 cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ACT14924. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Pectobacterium carotovorum subsp. carotovorum PC1 locus
ACT14924 putative acyltransferase, and similar proteins.
Length = 210
Score = 41.1 bits (97), Expect = 3e-04
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 188 IQSLKEAAHAIVKDNLSLIIFPEGT----RSQNGRL--LPFKKGFVHMALQSRLPIVPIV 241
+SL+EA +K+ +LIIFP G GR+ P+ +A +++ P+VP+
Sbjct: 85 RESLREALRH-LKNGGALIIFPAGRVSTASPPFGRVSDRPWNPFVARLARKAKAPVVPVY 143
Query: 242 LSGTHRAWRKGSLHIRP 258
SG + + I P
Sbjct: 144 FSGRNSRLFYLAGLIHP 160
>gnl|CDD|225488 COG2937, PlsB, Glycerol-3-phosphate O-acyltransferase [Lipid
metabolism].
Length = 810
Score = 41.2 bits (97), Expect = 5e-04
Identities = 43/161 (26%), Positives = 63/161 (39%), Gaps = 25/161 (15%)
Query: 105 VTGRLLMWILGNPVKIEGTEF--ADKR--------AIYISNHASPIDIFLLMW------L 148
V R+L N + +G E A++R +Y+ H S ID LL + L
Sbjct: 265 VLDRILSR-GWNRL-YQGDEVQNAERRRLALDGHEIVYVPCHRSHIDYLLLSYVLYHNGL 322
Query: 149 TPTGTVGIAKKEIIWYPLFGQLYVLAKHIRIDRSNPSAAIQS--LKEAAHAIVKDNLSLI 206
P + + G ++ I R+ + S +E + SL
Sbjct: 323 VPPHIAAGIN---LNFWPMGPIFRRGGAFFIRRTFKGNPLYSTVFREYLGELFSRGYSLE 379
Query: 207 IFPEGTRSQNGRLLPFKKGFVHMALQSRL--PIVPIVLSGT 245
F EG RS+ GRLLP K G + M LQ+ L PI+L
Sbjct: 380 YFIEGGRSRTGRLLPPKTGMLSMTLQAMLRGRTRPILLVPV 420
>gnl|CDD|178126 PLN02510, PLN02510, probable 1-acyl-sn-glycerol-3-phosphate
acyltransferase.
Length = 374
Score = 39.3 bits (92), Expect = 0.002
Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 62/216 (28%)
Query: 61 LISYVRIVTCFVTMMVTTFVWAI-------VMLLLLPWPYQRIRQGNIYGHVTGRLLMWI 113
+ +R + C + ++ T F+ + V+L L Y R +G L +W
Sbjct: 14 PLRRLRGLICLLVLLSTAFMMLVYLAPVSAVLLRLFSVHYSRKATSFFFGS---WLALW- 69
Query: 114 LGNPV---KIEGTEF--------ADKRAIYISNHASPIDIFLLMW--LTPTGTVG----I 156
P KI T+ ++R + I+NH + +D ++ +W G +G +
Sbjct: 70 ---PFLFEKINKTKVVFSGDKVPPEERVLLIANHRTEVD-WMYLWDLALRKGCLGYIKYV 125
Query: 157 AKKEIIWYPLFGQLYVLAKHI------RIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPE 210
K ++ P+FG + + + I +D N + S K+ +D L L +FPE
Sbjct: 126 LKSSLMKLPVFGWAFHIFEFIPVERKWEVDEPNIRQMLSSFKDP-----RDPLWLALFPE 180
Query: 211 GT--------RSQ-----------NGRLLPFKKGFV 227
GT RSQ N LLP KGFV
Sbjct: 181 GTDYTEAKCQRSQKFAAEHGLPILNNVLLPKTKGFV 216
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 39.1 bits (92), Expect = 0.002
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 24/133 (18%)
Query: 58 ISVLISYVRIVTCFVTMMVTTFVWAIVML------LLLPWPYQRIRQGNIYG-------- 103
++ L++ +R + + +++ T W++ ++ LLLP P IR+
Sbjct: 2 MNFLLAPLRGLLSILLLILNTLFWSVPIIILGLLKLLLPIP--AIRRACSRLLNFIAEAW 59
Query: 104 -HVTGRLLMWILGNPVKIEGTEFADKRAIY--ISNHASPIDIFLLMWL----TPTGTVGI 156
+ +L + +EG E K+ Y ISNH S +DI +L ++ P
Sbjct: 60 ISINNVILRLLPRTQWDVEGLEGLSKKGWYLVISNHQSWVDILVLQYVFNRRIP-MLKFF 118
Query: 157 AKKEIIWYPLFGQ 169
K+E+IW P G
Sbjct: 119 LKQELIWVPFLGL 131
>gnl|CDD|153245 cd07983, LPLAT_DUF374-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: DUF374.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are the uncharacterized DUF374
phospholipid/glycerol acyltransferases and similar
proteins.
Length = 189
Score = 38.3 bits (90), Expect = 0.002
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 188 IQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLLPFKKGFVHMALQSRLPIVPIVLSGTHR 247
+L+E +KD ++ I P+G R G K G + +A +S PIVP+ ++ + R
Sbjct: 84 AAALREMLR-ALKDGYNIAITPDGPR---GPRYKVKPGVILLARKSGAPIVPVAIAAS-R 138
Query: 248 AWRKGSL--HIRPVP---ITVKYLPPIS-TSDWTADKLDDY 282
AWR S I P P + + + PI D ++L++Y
Sbjct: 139 AWRLKSWDRFIIPKPFSRVVIVFGEPIHVPPDADEEELEEY 179
>gnl|CDD|234317 TIGR03703, plsB, glycerol-3-phosphate O-acyltransferase. Members
of this protein family are PlsB, glycerol-3-phosphate
O-acyltransferase, present in E. coli and numerous
related species. In many bacteria, PlsB is not found,
and appears to be replaced by a two enzyme system for
1-acyl-glycerol-3-phosphate biosynthesis, the PlsX/Y
system [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 799
Score = 38.0 bits (89), Expect = 0.006
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 208 FPEGTRSQNGRLLPFKKGFVHMALQSRL-----PI--VPIVLSGTH 246
F EG RS+ GRLLP K G + M LQ+ L PI VP+ + H
Sbjct: 377 FVEGGRSRTGRLLPPKTGMLAMTLQAMLRGIRRPITLVPVYIGYEH 422
>gnl|CDD|235325 PRK04974, PRK04974, glycerol-3-phosphate acyltransferase;
Validated.
Length = 818
Score = 36.0 bits (84), Expect = 0.024
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 208 FPEGTRSQNGRLLPFKKGFVHMALQS-----RLPI--VPI 240
F EG RS+ GRLL K G + M LQ+ R PI VP+
Sbjct: 387 FVEGGRSRTGRLLQPKTGMLAMTLQAMLRGSRRPITLVPV 426
>gnl|CDD|178006 PLN02380, PLN02380, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 376
Score = 34.7 bits (80), Expect = 0.050
Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 50/201 (24%)
Query: 84 VMLLLLPWPYQRIRQGNIYGHVTGRL---LMWILGNPVKIEGTEFADK---------RAI 131
+ +L P + I V L L+W++ ++ +AD+ A+
Sbjct: 28 AVCFILVRPLSKSLYRRINRAVAELLWLELIWLVDWWAGVKVQLYADEETFELMGKEHAL 87
Query: 132 YISNHASPIDIFLLMWLTPT------GTVGIAKKEIIWYPLFGQLYVLAKHIRIDRS--- 182
ISNH S ID L+ W+ + + KK + P+ G ++++ ++RS
Sbjct: 88 VISNHRSDIDW-LVGWILAQRSGCLGSALAVMKKSSKFLPVIGWSMWFSEYVFLERSWAK 146
Query: 183 ---NPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRSQNGRLL------------------- 220
+ Q LK+ L +F EGTR +LL
Sbjct: 147 DENTLKSGFQRLKDFPRP-----FWLALFVEGTRFTQAKLLAAQEYAASRGLPVPRNVLI 201
Query: 221 PFKKGFVHMALQSRLPIVPIV 241
P KGFV A+ + VP +
Sbjct: 202 PRTKGFVS-AVSNMRSFVPAI 221
>gnl|CDD|183265 PRK11660, PRK11660, putative transporter; Provisional.
Length = 568
Score = 30.3 bits (69), Expect = 1.6
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 78 TFVWAIVMLLLLPWPYQRIRQGNIYGH----VTGRLLMWIL---GNPVKIEGTEF 125
+ + + +L+ WP +IR + GH + G +M +L G V G+ F
Sbjct: 186 ALIGIVTLGVLILWPRLKIR---LPGHLPALLAGTAVMGVLNLLGGHVATIGSRF 237
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 30.0 bits (68), Expect = 1.9
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 12/73 (16%)
Query: 98 QGNIYGHVTGRLLM------WILGNPVKIEGTEF---ADKRAIYISNHASPIDIFLLMW- 147
G + G GR+ W PV + GTE AD + I D LL +
Sbjct: 337 GGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFG 396
Query: 148 --LTPTGTVGIAK 158
L G + + +
Sbjct: 397 LKLDKRGRIKVDE 409
>gnl|CDD|225154 COG2245, COG2245, Predicted membrane protein [Function unknown].
Length = 182
Score = 28.9 bits (65), Expect = 2.3
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 48 TDQYVDDDGFISVLISYVRIVTCFVTMMVTTFVWAIVMLLLLPWPYQRIRQGNIYGHVTG 107
+ Q +D F + LI+ V + FV ++ T +++V LLL + + + G
Sbjct: 46 SKQVGEDRIFNNYLIAVVLGLVGFVVVIFATAGFSLVALLLGTFMLPAHGLSALGSFLAG 105
Query: 108 RLLMWILG 115
+++WIL
Sbjct: 106 FVILWILY 113
>gnl|CDD|148066 pfam06235, NAD4L, NADH dehydrogenase subunit 4L (NAD4L). This
family consists of NADH dehydrogenase subunit 4L
(NAD4L) proteins from the mitochondria of several
parasitic flatworms.
Length = 86
Score = 26.8 bits (60), Expect = 5.0
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 57 FISVLISYVRIVTCFVTMMVTTFVWAIVMLLLL 89
+L+S F+++MV V + L+++
Sbjct: 39 LFCLLVSSEGSHMIFISLMVLFTVEVSLGLVVV 71
>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism].
Length = 265
Score = 28.1 bits (63), Expect = 5.3
Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 9/115 (7%)
Query: 58 ISVLISYVRIVTCFVTMMVTTFVWAIVMLLLLPWPYQRIRQGNIYGHVTGRLLMWILGNP 117
VL+ + + V + +L +L Y+ R + L + I
Sbjct: 9 AIVLLILFLLALLVGGLYFALLVLLLAILAILEA-YRANRFAVL--AGPLILGLPIDLGL 65
Query: 118 VKIEGTEFADKRAIYISNHASPIDIFLLMWLTPTGTVGIAKKEIIWYPLFGQLYV 172
V ++G +R + L L I + LFG LYV
Sbjct: 66 VLLDG-----RRLLGDGKETLLG-FLLGFLLGLVLLGVIYYLSDSLFKLFGLLYV 114
>gnl|CDD|179567 PRK03355, PRK03355, glycerol-3-phosphate acyltransferase;
Validated.
Length = 783
Score = 28.5 bits (64), Expect = 6.0
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 202 NLSLIIFPEGTRSQNGRLLPFKKGFVH 228
NLS I EGTRS+ G+LLP K G +
Sbjct: 348 NLSWYI--EGTRSRTGKLLPPKLGLLS 372
>gnl|CDD|178380 PLN02783, PLN02783, diacylglycerol O-acyltransferase.
Length = 315
Score = 27.7 bits (62), Expect = 7.5
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 223 KKGFVHMALQSRLPIVPIVLSGTHRA---WRKG 252
+KGFV +A+++ P+VP+ G RA W+ G
Sbjct: 198 RKGFVKIAMETGAPLVPVFCFGQTRAYKWWKPG 230
>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain.
Length = 84
Score = 26.2 bits (58), Expect = 7.9
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 143 FLLMWLTPTGTVGIAKKEIIWYPLFGQLYVLAKHIRIDRSNPSAAIQSLKE 193
L W P G I E+ + P+ G K I + + S + LK
Sbjct: 16 LTLSWSPPPGNGPITGYEVEYRPVNGGEEW--KEITVPGTTTSYTLTGLKP 64
>gnl|CDD|226365 COG3846, TrbL, Type IV secretory pathway, TrbL components
[Intracellular trafficking and secretion].
Length = 452
Score = 27.8 bits (62), Expect = 8.8
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 18/103 (17%)
Query: 32 PRVSVKQE-----AGFRPKAETDQYVDDDG--------FISVLISYVRIVTCFVTMMVTT 78
PR+ V F +A+ VD DG FI+ + S+ + +
Sbjct: 2 PRIPVMLVLALAGLAFAAQAQASAKVDADGLIDSFLGTFITAIDSWFGEIGGLAAFLAQL 61
Query: 79 FVWAIVMLLLLPWPYQRIRQGNIYGHVTGRLLM-----WILGN 116
V L L W Y+R ++ + + + ++L +IL N
Sbjct: 62 LANIDVTLAFLLWAYRRAKEQDFFAELLRKVLFVGFFAFILIN 104
>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase
[Coenzyme metabolism].
Length = 303
Score = 27.6 bits (62), Expect = 9.3
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 57 FISVLISYVRIVTCFVTMMVTTF--VWAIVMLLLLPWPYQRIRQ 98
++++Y+ V ++ VW ++ LL LP + R
Sbjct: 226 AALLVVAYL----AIVIFVILGLFPVWGLLFLLALPLAIRAARP 265
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.428
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,351,527
Number of extensions: 1595195
Number of successful extensions: 1458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1422
Number of HSP's successfully gapped: 46
Length of query: 312
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 215
Effective length of database: 6,635,264
Effective search space: 1426581760
Effective search space used: 1426581760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)