RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 021464
         (312 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 80.4 bits (198), Expect = 9e-18
 Identities = 33/195 (16%), Positives = 55/195 (28%), Gaps = 39/195 (20%)

Query: 126 ADKRAIYISNHASPIDIFLLMWLTPTG-------TVGIAKKEIIWYPLFGQLYVLAKHIR 178
                + ISNH +  D  ++  L           T+ +A   ++  PL     +    I 
Sbjct: 128 QGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLIC 187

Query: 179 IDRSNP------------SAAIQSLKEAAHAIVKDNLSLIIFPEGTRS----QNGRLLP- 221
           +                  A  +SLKE A  +   +  + I P G R       G   P 
Sbjct: 188 VYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPA 247

Query: 222 -FKKG----FVHMALQSRLP--IVPIVLSGTHRAWRKGSLH--------IRPVPITVKYL 266
            F          +   S +P  + P+ L           +         I      +   
Sbjct: 248 PFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVA 307

Query: 267 PPISTSDWTADKLDD 281
           P IS  +  A   + 
Sbjct: 308 PEISFEEIAATHKNP 322


>d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase
           (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]}
          Length = 297

 Score = 25.7 bits (56), Expect = 6.6
 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 11/83 (13%)

Query: 217 GRLLPFKKGFVHMALQSRLPIVPIVLSGTHRAWRKGSLHIRPVPITVKYLPPI-----ST 271
            +++ + +GF+ +   +      +   G    WR G        I   +L  I       
Sbjct: 153 SKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGC------IIRSVFLGKIKDAFDRN 206

Query: 272 SDWTADKLDDYIKMVHDMYVKNL 294
                  LDD+ K   +    + 
Sbjct: 207 PGLQNLLLDDFFKSAVENCQDSW 229


>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Rice (Oryza sativa) [TaxId:
           4530]}
          Length = 122

 Score = 24.8 bits (54), Expect = 9.7
 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)

Query: 122 GTEFADKRAIYISNHASP---IDIFLLMWLTPTG 152
             EF+    +Y  NH SP      +  MW  P  
Sbjct: 41  CLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMF 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0439    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,212,619
Number of extensions: 57693
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 9
Length of query: 312
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,240,546
Effective search space: 281603942
Effective search space used: 281603942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.9 bits)