BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021465
         (312 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3C0B|A Chain A, Crystal Structure Of The Conserved Archaeal Protein
           Q6m145. Northeast Structural Genomics Consortium Target
           Mrr63
 pdb|3C0B|B Chain B, Crystal Structure Of The Conserved Archaeal Protein
           Q6m145. Northeast Structural Genomics Consortium Target
           Mrr63
 pdb|3C0B|C Chain C, Crystal Structure Of The Conserved Archaeal Protein
           Q6m145. Northeast Structural Genomics Consortium Target
           Mrr63
 pdb|3C0B|D Chain D, Crystal Structure Of The Conserved Archaeal Protein
           Q6m145. Northeast Structural Genomics Consortium Target
           Mrr63
 pdb|3CET|A Chain A, Crystal Structure Of The Pantheonate Kinase-Like Protein
           Q6m145 At The Resolution 1.8 A. Northeast Structural
           Genomics Consortium Target Mrr63
 pdb|3CET|B Chain B, Crystal Structure Of The Pantheonate Kinase-Like Protein
           Q6m145 At The Resolution 1.8 A. Northeast Structural
           Genomics Consortium Target Mrr63
          Length = 334

 Score = 29.6 bits (65), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 15/140 (10%)

Query: 38  GHRLLEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNI 97
           G    + +P++E K+  +  ++ERL   NH L     T+R  ++     I   K    N+
Sbjct: 135 GSTTTDIIPIVEGKVVAEKTDLERLX--NHELLYVG-TLRTPISHLGNTIS-FKGVDTNV 190

Query: 98  HTES---DSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQAS 154
            +E     + I V+L+K+   E  C   +    D      +  SL R  + L S + Q S
Sbjct: 191 SSEYFAITADISVVLEKVTTEEYTCDTPDGKGTD------KRSSLVRISKVLCSDLDQIS 244

Query: 155 EALHKARLEVKNLPDLHAEL 174
           E    A    KN  +L  EL
Sbjct: 245 EI--DAENIAKNYYELWKEL 262


>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
 pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
          Length = 251

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 20/120 (16%)

Query: 92  AHIRNIHTESDSHIRVL--------LDKI---AKMEADCKAGERLKKDLQQAHIEAQSLA 140
           A ++ +   S+S+I+ +        LD+I    +  +D  A ERLKK++  +HI  Q + 
Sbjct: 123 AELKALKESSESNIKDIKKKLEAKRLDRIQVXXRSTSDKAAQERLKKEINNSHI--QEVV 180

Query: 141 RARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVE 200
           +  + LT K  +  + L + + E  NL  +  +   L+QE     A  EYE+ L    VE
Sbjct: 181 QTIKLLTEKTARYQQKLEEKQAE--NLRAIQEKEGQLQQE-----AVAEYEEKLKTLTVE 233


>pdb|2D4G|A Chain A, Structure Of Yjcg Protein, A Putative 2'-5' Rna Ligase
           From Bacillus Subtilis
 pdb|2D4G|B Chain B, Structure Of Yjcg Protein, A Putative 2'-5' Rna Ligase
           From Bacillus Subtilis
          Length = 171

 Score = 28.1 bits (61), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 66  NHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES 101
           ++ L   H+T+R     A+++  ++ +H+RNI  ES
Sbjct: 27  SYSLIPPHLTLRASFECAEEKADQLVSHLRNIAKES 62


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,758,293
Number of Sequences: 62578
Number of extensions: 341461
Number of successful extensions: 1041
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 41
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)