BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021465
(312 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q69ZB0|LRCC1_MOUSE Leucine-rich repeat and coiled-coil domain-containing protein 1
OS=Mus musculus GN=Lrrcc1 PE=2 SV=2
Length = 1026
Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats.
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 32/194 (16%)
Query: 57 AEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH---TESDSHIRVLLDKIA 113
A+IE L R+N L SH + + L + I IR + E D I++L ++IA
Sbjct: 783 AQIESLCRENESLRKSHESDCDALRIKCKIIEDQNETIRKLKDSLQEKDGQIKLLQEQIA 842
Query: 114 ----------------------KMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQ 151
K+E + E+LK+ L+ +E + + +A L K
Sbjct: 843 LIEKCSQEQLNEKSSQLDSIVEKLERHNERKEKLKQQLKAKELELEEIRKAYSTLNKKWH 902
Query: 152 QASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVG 211
E L ++VK + + + R+L+A + L D +E+LQ M+
Sbjct: 903 DKGELLSHLEMQVKEVK------EKFEDKERKLKAERDKSLELQKDAMEKLQNMDDAFRR 956
Query: 212 MAREMEKLH-AEVV 224
E+ + H AE++
Sbjct: 957 QVDEIVEAHQAEIM 970
>sp|Q02224|CENPE_HUMAN Centromere-associated protein E OS=Homo sapiens GN=CENPE PE=1 SV=2
Length = 2701
Score = 41.6 bits (96), Expect = 0.007, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 11/150 (7%)
Query: 76 MREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIE 135
M +++ +E + + + + TE + L +K +++ E+LK+ L+
Sbjct: 843 MNQEIVNLSKEAQKFDSSLGALKTELSYKTQELQEKTREVQERLNEMEQLKEQLENRDST 902
Query: 136 AQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLN 195
Q++ R + +T K+QQ E + E +L L +SL+ E +L++ +N
Sbjct: 903 LQTVEREKTLITEKLQQTLEEVKTLTQEKDDLKQLQ---ESLQIERDQLKSDIHDTVNMN 959
Query: 196 IDNVEQLQAMEKNLVGMAREMEKLHAEVVN 225
ID EQL+ A E K H E +N
Sbjct: 960 IDTQEQLRN--------ALESLKQHQETIN 981
>sp|Q8TZY2|SMC_PYRFU Chromosome partition protein Smc OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=smc PE=1 SV=2
Length = 1177
Score = 40.8 bits (94), Expect = 0.013, Method: Composition-based stats.
Identities = 43/218 (19%), Positives = 99/218 (45%), Gaps = 30/218 (13%)
Query: 35 SPAGHRLLEPLPLLEDKIAVQAAEIERL--------ARDNHRLAASHITMREDLAAAQQE 86
+P L+E + +++ +I+ E+ R+ +R N L ++ E++ +
Sbjct: 777 NPEARELMEKIRIIDGEISSLKEELSRIESRIESLESRLNEELLPRKASLEEEIEGLVNK 836
Query: 87 IPRIKAHI-----------------RNIHTESDSHIRVLLDKIAKMEADC----KAGERL 125
I +K +I ++I IR L +K K+E D + E L
Sbjct: 837 INALKNNISENEKALELLNKELEKLKSIEENIKGEIRTLREKRKKLEEDISKLREKKEVL 896
Query: 126 KKDLQQAHIEAQSLARARQELTSKIQQASEAL-HKARLEVKNLPDLHAELDSLRQEHRRL 184
++ LQ+ IEA +L +L +++++ L H + +K++ ++ +L+ +++E ++
Sbjct: 897 QRKLQELEIEANTLKVRDAQLNAQLEEKKYQLTHYDKNLIKSIKEIPLDLEKVKKEIEKM 956
Query: 185 RATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAE 222
+ +N+ +E + +E+ + + + EKL AE
Sbjct: 957 EEEIRSLEPVNMKAIEDFEIVERRYLELKSKREKLEAE 994
>sp|P05659|MYSN_ACACA Myosin-2 heavy chain, non muscle OS=Acanthamoeba castellanii PE=3
SV=1
Length = 1509
Score = 39.3 bits (90), Expect = 0.035, Method: Composition-based stats.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 10/180 (5%)
Query: 48 LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRV 107
L+DK +AA + L + L+ ++ LA A+ +++ ++N +D +R
Sbjct: 987 LQDKYEDEAAAHDSLKKKEEDLSRELRETKDALADAENISETLRSKLKNTERGADD-VRN 1045
Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
LD + + E+ KK L++ LA+ R +L + A KA+ + L
Sbjct: 1046 ELDDVTATKLQL---EKTKKSLEE------ELAQTRAQLEEEKSGKEAASSKAKQLGQQL 1096
Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227
D +E+DSL+ + + + K N D EQL+ + ++ + L A++ E
Sbjct: 1097 EDARSEVDSLKSKLSAAEKSLKTAKDQNRDLDEQLEDERTVRANVDKQKKALEAKLTELE 1156
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=USO1 PE=1 SV=2
Length = 1790
Score = 38.9 bits (89), Expect = 0.043, Method: Composition-based stats.
Identities = 43/208 (20%), Positives = 84/208 (40%), Gaps = 44/208 (21%)
Query: 49 EDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESD------ 102
ED I +E + + M +DL A +E+ ++ + +N+ E D
Sbjct: 838 EDSIKTLEKGLETILSQKKKAEDGINKMGKDLFALSREMQAVEENCKNLQKEKDKSNVNH 897
Query: 103 ---------------SHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELT 147
+ I+ + + + +M+ C + K+ + + +E +S ++ L
Sbjct: 898 QKETKSLKEDIAAKITEIKAINENLEEMKIQCNNLSKEKEHISKELVEYKSRFQSHDNLV 957
Query: 148 SKI--------------QQASEALHKARLEVKN-----LPDLHAELDSLRQEHRRLRATF 188
+K+ Q +E+L KA E KN L +L ++DS+ QE + F
Sbjct: 958 AKLTEKLKSLANNYKDMQAENESLIKAVEESKNESSIQLSNLQNKIDSMSQE----KENF 1013
Query: 189 EYEKGLNIDNVEQLQAMEKNLVGMAREM 216
+ E+G N+EQL+ +L E+
Sbjct: 1014 QIERGSIEKNIEQLKKTISDLEQTKEEI 1041
Score = 33.9 bits (76), Expect = 1.5, Method: Composition-based stats.
Identities = 37/193 (19%), Positives = 87/193 (45%), Gaps = 28/193 (14%)
Query: 49 EDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHT--------- 99
+DKI ++ + RDN R S ++E L AAQ+ +++ ++ +
Sbjct: 1444 KDKITRNDEKLLSIERDNKRDLES---LKEQLRAAQESKAKVEEGLKKLEEESSKEKAEL 1500
Query: 100 -ESDSHIRVLLDKI--------AKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKI 150
+S ++ L I + ME K+ E+L++ + A + ++L + +L S+I
Sbjct: 1501 EKSKEMMKKLESTIESNETELKSSMETIRKSDEKLEQSKKSAEEDIKNLQHEKSDLISRI 1560
Query: 151 QQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLV 210
++ + + + + +++ +EL++++QE + N E+ ++ L
Sbjct: 1561 NESEKDIEELKSKLRIEAKSGSELETVKQELNNAQEKIRI-------NAEENTVLKSKLE 1613
Query: 211 GMAREMEKLHAEV 223
+ RE++ AE+
Sbjct: 1614 DIERELKDKQAEI 1626
Score = 32.7 bits (73), Expect = 3.5, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 70/152 (46%), Gaps = 15/152 (9%)
Query: 79 DLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQS 138
+L +QE+ + IR I+ E ++ ++ L+ I + D +A +K + ++ +
Sbjct: 1583 ELETVKQELNNAQEKIR-INAEENTVLKSKLEDIERELKDKQA--EIKSNQEEKELLTSR 1639
Query: 139 LARARQELTSKIQQASEALHKARLEVKNLPDLHAELDS----LRQEHRRL----RATFEY 190
L QEL S Q+A ++ + R EV+ ++LD L ++ L +A
Sbjct: 1640 LKELEQELDSTQQKAQKSEEERRAEVRKFQVEKSQLDEKAMLLETKYNDLVNKEQAWKRD 1699
Query: 191 EKGLNIDNVEQLQAMEKNLVGMAREMEKLHAE 222
E + Q Q +EK +A+E++ L AE
Sbjct: 1700 EDTVKKTTDSQRQEIEK----LAKELDNLKAE 1727
Score = 32.7 bits (73), Expect = 3.7, Method: Composition-based stats.
Identities = 32/170 (18%), Positives = 72/170 (42%), Gaps = 13/170 (7%)
Query: 58 EIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEA 117
E+E+L R +L +++ + + + + + N H E D ++L + ++
Sbjct: 731 EVEKLQRQCTKLKGEITSLQTETESTHENLTEKLIALTNEHKELDEKYQILNSSHSSLKE 790
Query: 118 DCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSL 177
+ L+ +L+ + + R L +K ++ AL LE K+ +H + DS+
Sbjct: 791 NFSI---LETELKNVRDSLDEMTQLRDVLETKDKENQTAL----LEYKS--TIHKQEDSI 841
Query: 178 RQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227
+ + L +K + + M K+L ++REM+ + N +
Sbjct: 842 KTLEKGLETILSQKKKAE----DGINKMGKDLFALSREMQAVEENCKNLQ 887
>sp|Q2YXX0|SBCC_STAAB Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=sbcC PE=3 SV=2
Length = 1009
Score = 38.1 bits (87), Expect = 0.092, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH--TESDSHIRV 107
D IA + EI+ + + H TM+ ++A EI + I NI+ T+SD + V
Sbjct: 535 DSIAKRQNEIKEIEANIH-------TMKSNIAVHNFEIKFVNEKISNINIKTQSDLSLEV 587
Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
L ++ + E L K ++Q + + LT +I L+K E+K
Sbjct: 588 LNKRLLENENALNNQRDLNKFIEQ-------MKEEKDNLTLQIHNKQLRLNKNESELKIC 640
Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209
DL E ++L + + +Y+K + +V Q Q K +
Sbjct: 641 RDLITEFETLSKYNNITNFEVDYKK--YVQDVNQHQEHSKEI 680
>sp|Q3V6T2|GRDN_HUMAN Girdin OS=Homo sapiens GN=CCDC88A PE=1 SV=2
Length = 1871
Score = 38.1 bits (87), Expect = 0.096, Method: Composition-based stats.
Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 25/204 (12%)
Query: 41 LLEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQE---------IPRIK 91
L + L + E+KIA A +E N +L T++++ A +Q P I
Sbjct: 965 LKKSLEIKEEKIAALEARLEESTNYNQQLRQELKTVKKNYEALKQRQDEERMVQSSPPIS 1024
Query: 92 AHIRNIHTESDSHIRVLL---DKIAKMEADCKAGERLKKDL---------QQAHIEAQSL 139
ES R LL D++ ++E + + K+ L Q +++AQ L
Sbjct: 1025 GEDNKWERESQETTRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQAQIL 1084
Query: 140 ARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRL---RATFEYEKGLNI 196
A RQ ++ + Q + A+L+V+N L+++ SL ++ +L +++ E E I
Sbjct: 1085 ALQRQTVSLQEQNTTLQTQNAKLQVEN-STLNSQSTSLMNQNAQLLIQQSSLENENESVI 1143
Query: 197 DNVEQLQAMEKNLVGMAREMEKLH 220
E L+++ +L+ ++E LH
Sbjct: 1144 KEREDLKSLYDSLIKDHEKLELLH 1167
Score = 35.4 bits (80), Expect = 0.53, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 58 EIERLARDNHRLAASHITMR---EDLAAAQQEIPRIKAHIRNIHTESDSH------IRVL 108
++E L ++N +L ++ +R E L A ++ +++ + + +E + ++
Sbjct: 688 QLESLEKENSQLDEENLELRRNVESLKCASMKMAQLQLENKELESEKEQLKKGLELLKAS 747
Query: 109 LDKIAKMEADCKA----GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEV 164
K ++E + +RL+K L+ ++ + Q L Q+L + Q + L + ++
Sbjct: 748 FKKTERLEVSYQGLDIENQRLQKTLENSNKKIQQLESELQDLEMENQTLQKNLEELKISS 807
Query: 165 KNLPDLHAELDSLRQEHRRL 184
K L L E SL QE +L
Sbjct: 808 KRLEQLEKENKSLEQETSQL 827
>sp|Q5SNZ0|GRDN_MOUSE Girdin OS=Mus musculus GN=Ccdc88a PE=1 SV=2
Length = 1873
Score = 37.0 bits (84), Expect = 0.17, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 58 EIERLARDNHRLAASHITMR---EDLAAAQQEIPRIKAHIRNIHTESDSH------IRVL 108
++E L ++N +L ++ +R E L A + +++ + + +E + +R
Sbjct: 688 QLESLEKENSQLDEENLELRRSVESLKCASMRMAQLQLENKELESEKEQLRKGLELMRAS 747
Query: 109 LDKIAKMEADCKA----GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEV 164
K ++E + +RL+K L+ ++ + Q L Q+L + Q ++L + ++
Sbjct: 748 FKKTERLEVSYQGLDTENQRLQKALENSNKKIQQLESELQDLEMENQTLQKSLEELKISS 807
Query: 165 KNLPDLHAELDSLRQEHRRL 184
K L L E SL QE +L
Sbjct: 808 KRLEQLEKENKSLEQETSQL 827
Score = 32.3 bits (72), Expect = 5.2, Method: Composition-based stats.
Identities = 48/205 (23%), Positives = 92/205 (44%), Gaps = 27/205 (13%)
Query: 41 LLEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQE----------IPRI 90
L + L + E+KIA A +E N +L T++++ A +Q IP +
Sbjct: 965 LKKSLEIKEEKIAALEARLEESTNYNQQLRHELKTVKKNYEALKQRQDEERMVQSSIP-V 1023
Query: 91 KAHIRNIHTESDSHIRVLL---DKIAKMEADCKAGERLKKDL---------QQAHIEAQS 138
ES R LL D++ ++E + + K+ L Q +++AQ
Sbjct: 1024 SGEDDKWGRESQEATRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQAQI 1083
Query: 139 LARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRL---RATFEYEKGLN 195
LA RQ ++ + Q + A+L+V+N L+++ SL ++ +L +++ E E
Sbjct: 1084 LALQRQTVSLQEQNTTLQTQNAKLQVEN-STLNSQSTSLMNQNAQLLIQQSSLENENESI 1142
Query: 196 IDNVEQLQAMEKNLVGMAREMEKLH 220
+ E L+++ L+ ++E LH
Sbjct: 1143 MKEREDLKSLYDALIKDHEKLELLH 1167
>sp|Q2FYT3|SBCC_STAA8 Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain NCTC
8325) GN=sbcC PE=1 SV=2
Length = 1009
Score = 37.0 bits (84), Expect = 0.19, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH--TESDSHIRV 107
D IA + EI+ + + H ++ ++A EI + I NI+ T+SD + V
Sbjct: 535 DSIAKRQNEIKEIEANIH-------AIKSNIAVHNSEIKFVNEKISNINIKTQSDFSLEV 587
Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
L ++ + E L K ++Q + + LT +I L+K E+K
Sbjct: 588 LNKRLLENENALNNQRDLNKFIEQ-------MKEEKDNLTLQIHNKQLRLNKNESELKLC 640
Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209
DL E ++L + + +Y+K + +V Q Q + K +
Sbjct: 641 RDLITEFETLSKYNNITNFEVDYKK--YVQDVNQHQELSKEI 680
>sp|Q8NWV1|SBCC_STAAW Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain MW2)
GN=sbcC PE=3 SV=1
Length = 1009
Score = 37.0 bits (84), Expect = 0.21, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH--TESDSHIRV 107
D IA + EI+ + + H ++ ++A EI + I NI+ T+SD + V
Sbjct: 535 DSIAKRQNEIKEIEANIH-------AIKSNIAVHNSEIKFVNEKISNINIKTQSDFSLEV 587
Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
L ++ + E L K ++Q + + LT +I L+K E+K
Sbjct: 588 LNKRLLENENALNNQRDLNKFIEQ-------MKEEKDNLTLQIHNKQLRLNKNESELKLC 640
Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209
DL E ++L + + +Y+K + +V Q Q + K +
Sbjct: 641 RDLITEFETLSKYNNITNFEVDYKK--YVQDVNQHQELSKEI 680
>sp|A8Z219|SBCC_STAAT Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=sbcC PE=3 SV=1
Length = 1009
Score = 37.0 bits (84), Expect = 0.21, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH--TESDSHIRV 107
D IA + EI+ + + H ++ ++A EI + I NI+ T+SD + V
Sbjct: 535 DSIAKRQNEIKEIEANIH-------AIKSNIAVHNSEIKFVNEKISNINIKTQSDFSLEV 587
Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
L ++ + E L K ++Q + + LT +I L+K E+K
Sbjct: 588 LNKRLLENENALNNQRDLNKFIEQ-------MKEEKDNLTLQIHNKQLRLNKNESELKLC 640
Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209
DL E ++L + + +Y+K + +V Q Q + K +
Sbjct: 641 RDLITEFETLSKYNNITNFEVDYKK--YVQDVNQHQELSKEI 680
>sp|A6QGP8|SBCC_STAAE Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain Newman)
GN=sbcC PE=1 SV=1
Length = 1009
Score = 37.0 bits (84), Expect = 0.21, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH--TESDSHIRV 107
D IA + EI+ + + H ++ ++A EI + I NI+ T+SD + V
Sbjct: 535 DSIAKRQNEIKEIEANIH-------AIKSNIAVHNSEIKFVNEKISNINIKTQSDFSLEV 587
Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
L ++ + E L K ++Q + + LT +I L+K E+K
Sbjct: 588 LNKRLLENENALNNQRDLNKFIEQ-------MKEEKDNLTLQIHNKQLRLNKNESELKLC 640
Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209
DL E ++L + + +Y+K + +V Q Q + K +
Sbjct: 641 RDLITEFETLSKYNNITNFEVDYKK--YVQDVNQHQELSKEI 680
>sp|Q5HG72|SBCC_STAAC Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain COL)
GN=sbcC PE=3 SV=1
Length = 1009
Score = 37.0 bits (84), Expect = 0.21, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH--TESDSHIRV 107
D IA + EI+ + + H ++ ++A EI + I NI+ T+SD + V
Sbjct: 535 DSIAKRQNEIKEIEANIH-------AIKSNIAVHNSEIKFVNEKISNINIKTQSDFSLEV 587
Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
L ++ + E L K ++Q + + LT +I L+K E+K
Sbjct: 588 LNKRLLENENALNNQRDLNKFIEQ-------MKEEKDNLTLQIHNKQLRLNKNESELKLC 640
Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209
DL E ++L + + +Y+K + +V Q Q + K +
Sbjct: 641 RDLITEFETLSKYNNITNFEVDYKK--YVQDVNQHQELSKEI 680
>sp|Q6G9L2|SBCC_STAAS Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain MSSA476)
GN=sbcC PE=3 SV=1
Length = 1009
Score = 37.0 bits (84), Expect = 0.21, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH--TESDSHIRV 107
D IA + EI+ + + H ++ ++A EI + I NI+ T+SD + V
Sbjct: 535 DSIAKRQNEIKEIEANIH-------AIKSNIAVHNSEIKFVNEKISNINIKTQSDFSLEV 587
Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
L ++ + E L K ++Q + + LT +I L+K E+K
Sbjct: 588 LNKRLLENENALNNQRDLNKFIEQ-------MKEEKDNLTLQIHNKQLRLNKNESELKLC 640
Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209
DL E ++L + + +Y+K + +V Q Q + K +
Sbjct: 641 RDLITEFETLSKYNNITNFEVDYKK--YVQDVNQHQELSKEI 680
>sp|Q7A5S6|SBCC_STAAN Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain N315)
GN=sbcC PE=1 SV=1
Length = 1009
Score = 37.0 bits (84), Expect = 0.21, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH--TESDSHIRV 107
D IA + EI+ + + H ++ ++A EI + I NI+ T+SD + V
Sbjct: 535 DSIAKRQNEIKEIEANIH-------AIKSNIAVHNSEIKFVNEKISNINIKTQSDFSLEV 587
Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
L ++ + E L K ++Q + + LT +I L+K E+K
Sbjct: 588 LNKRLLENENALNNQRDLNKFIEQ-------MKEEKDNLTLQIHNKQLRLNKNESELKLC 640
Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209
DL E ++L + + +Y+K + +V Q Q + K +
Sbjct: 641 RDLITEFETLSKYNNITNFEVDYKK--YVQDVNQHQELSKEI 680
>sp|Q99UD0|SBCC_STAAM Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=sbcC PE=3 SV=1
Length = 1009
Score = 37.0 bits (84), Expect = 0.21, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH--TESDSHIRV 107
D IA + EI+ + + H ++ ++A EI + I NI+ T+SD + V
Sbjct: 535 DSIAKRQNEIKEIEANIH-------AIKSNIAVHNSEIKFVNEKISNINIKTQSDFSLEV 587
Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
L ++ + E L K ++Q + + LT +I L+K E+K
Sbjct: 588 LNKRLLENENALNNQRDLNKFIEQ-------MKEEKDNLTLQIHNKQLRLNKNESELKLC 640
Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209
DL E ++L + + +Y+K + +V Q Q + K +
Sbjct: 641 RDLITEFETLSKYNNITNFEVDYKK--YVQDVNQHQELSKEI 680
>sp|A5ISM9|SBCC_STAA9 Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain JH9)
GN=sbcC PE=3 SV=1
Length = 1009
Score = 37.0 bits (84), Expect = 0.21, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH--TESDSHIRV 107
D IA + EI+ + + H ++ ++A EI + I NI+ T+SD + V
Sbjct: 535 DSIAKRQNEIKEIEANIH-------AIKSNIAVHNSEIKFVNEKISNINIKTQSDFSLEV 587
Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
L ++ + E L K ++Q + + LT +I L+K E+K
Sbjct: 588 LNKRLLENENALNNQRDLNKFIEQ-------MKEEKDNLTLQIHNKQLRLNKNESELKLC 640
Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209
DL E ++L + + +Y+K + +V Q Q + K +
Sbjct: 641 RDLITEFETLSKYNNITNFEVDYKK--YVQDVNQHQELSKEI 680
>sp|A6U1G7|SBCC_STAA2 Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain JH1)
GN=sbcC PE=3 SV=1
Length = 1009
Score = 37.0 bits (84), Expect = 0.21, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH--TESDSHIRV 107
D IA + EI+ + + H ++ ++A EI + I NI+ T+SD + V
Sbjct: 535 DSIAKRQNEIKEIEANIH-------AIKSNIAVHNSEIKFVNEKISNINIKTQSDFSLEV 587
Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
L ++ + E L K ++Q + + LT +I L+K E+K
Sbjct: 588 LNKRLLENENALNNQRDLNKFIEQ-------MKEEKDNLTLQIHNKQLRLNKNESELKLC 640
Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209
DL E ++L + + +Y+K + +V Q Q + K +
Sbjct: 641 RDLITEFETLSKYNNITNFEVDYKK--YVQDVNQHQELSKEI 680
>sp|A7X203|SBCC_STAA1 Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=sbcC PE=3 SV=1
Length = 1009
Score = 37.0 bits (84), Expect = 0.21, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH--TESDSHIRV 107
D IA + EI+ + + H ++ ++A EI + I NI+ T+SD + V
Sbjct: 535 DSIAKRQNEIKEIEANIH-------AIKSNIAVHNSEIKFVNEKISNINIKTQSDFSLEV 587
Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
L ++ + E L K ++Q + + LT +I L+K E+K
Sbjct: 588 LNKRLLENENALNNQRDLNKFIEQ-------MKEEKDNLTLQIHNKQLRLNKNESELKLC 640
Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209
DL E ++L + + +Y+K + +V Q Q + K +
Sbjct: 641 RDLITEFETLSKYNNITNFEVDYKK--YVQDVNQHQELSKEI 680
>sp|Q2FH88|SBCC_STAA3 Nuclease SbcCD subunit C OS=Staphylococcus aureus (strain USA300)
GN=sbcC PE=3 SV=1
Length = 1009
Score = 36.6 bits (83), Expect = 0.22, Method: Composition-based stats.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 18/162 (11%)
Query: 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH--TESDSHIRV 107
D IA + EI+ + + H ++ ++A EI + I NI+ T+SD + V
Sbjct: 535 DSIAKRQNEIKEIEANIH-------AIKSNIAVHNSEIKFVNEKISNINIKTQSDFSLEV 587
Query: 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL 167
L ++ + E L K ++Q + + LT +I L+K E+K
Sbjct: 588 LNKRLLENENALNNQRDLNKFIEQ-------MKEEKDNLTLQIHNKQLRLNKNESELKLC 640
Query: 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209
DL E ++L + + +Y+K + +V Q Q + K +
Sbjct: 641 RDLITEFETLSKYNNITNFEVDYKK--YVQDVNQHQELSKEI 680
>sp|Q6RT24|CENPE_MOUSE Centromere-associated protein E OS=Mus musculus GN=Cenpe PE=1 SV=1
Length = 2474
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Query: 110 DKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPD 169
+++ KMEA L+++L+ QS+ + + LT K+QQA + + E KNL
Sbjct: 884 ERLNKMEA-------LREELESRDSSLQSVEKEKVLLTEKLQQALKEVKALTQEKKNLKQ 936
Query: 170 LHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202
L +SL+ E +LR+ + +NID EQL
Sbjct: 937 LQ---ESLQTERDQLRSDIQDTVNMNIDTQEQL 966
>sp|D3Q568|ARC_STANL Proteasome-associated ATPase OS=Stackebrandtia nassauensis
(strain DSM 44728 / NRRL B-16338 / NBRC 102104 /
LLR-40K-21) GN=arc PE=3 SV=1
Length = 596
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRI 90
LLE+++A A++ER++ N RL A+ RE + ++EI R+
Sbjct: 48 LLEERLAATKAQVERMSEQNERLVATLKDAREQIVTLKEEIDRL 91
>sp|Q9GYZ0|KIF15_STRPU Kinesin-like protein KIF15 OS=Strongylocentrotus purpuratus GN=KIF15
PE=1 SV=1
Length = 1463
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 82/179 (45%), Gaps = 20/179 (11%)
Query: 48 LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRI-------KAHIRNIHTE 100
LE+++ Q+ E+E L D +L ++ T++ + QQ + KA I + E
Sbjct: 878 LENEMCGQSRELENLTEDREQLQDAYNTLQAEHEFQQQREADLENRLKGKKAEITQLQEE 937
Query: 101 SDSHIRVL---LDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEAL 157
H+ L DK ++ A+ + G+ KKDL A R +L ++ + L
Sbjct: 938 IQKHLEKLDSERDKSMRLTAELRQGDNTKKDLLDAQELIDQFREERDDLLHRLDTEALKL 997
Query: 158 HKARLEVKNLPDLHAELDSLRQ---EHRR----LRATFEYEKGLNIDNVEQLQAMEKNL 209
++ ++L +++ L ++++ E + L A + +KG+ D EQL +M+ L
Sbjct: 998 SSSK---EDLETVNSALTAIKKTDVEQKEALSSLMAALQGQKGMVKDKEEQLASMQMQL 1053
>sp|P21249|ANT1_ONCVO Major antigen OS=Onchocerca volvulus GN=OVT1 PE=2 SV=2
Length = 2022
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 44 PLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDS 103
L LL +KI E ER+ +DN L T R+DL +QE R + + E+ +
Sbjct: 769 ELNLLTEKIRKVEIEFERIKKDNQELEDHERTARDDL---KQETNRNHLLAKELE-EARA 824
Query: 104 HIRVLLDKIAKMEADCK 120
I L D++AKM+A+ K
Sbjct: 825 DIVALNDRLAKMDANFK 841
>sp|Q65GE2|MUTS2_BACLD MutS2 protein OS=Bacillus licheniformis (strain DSM 13 / ATCC
14580) GN=mutS2 PE=3 SV=1
Length = 785
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 87 IPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQEL 146
I R KA + H E D+ I L D + EA+ K E ++ + + H + Q QE
Sbjct: 505 IGRAKAEMTAEHNEVDTMIASLEDSKKRAEAELKETEAIRAEAEALHRDLQQQISEWQEK 564
Query: 147 TSKIQQASE--ALHKARLEVKNLPDLHAELDSLRQEHRRLR 185
K+ + +E A K + +K D+ L ++++H+ +
Sbjct: 565 KDKLYEEAEQKAAEKVKAAMKEADDIIQSLRMIKEDHKAFK 605
>sp|Q5R829|ODFP2_PONAB Outer dense fiber protein 2 OS=Pongo abelii GN=ODF2 PE=2 SV=1
Length = 680
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 48 LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSH--- 104
L +++ Q AE +N RL AS M + L A E+ ++KA ++N D++
Sbjct: 485 LVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQ 544
Query: 105 ---IRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKI 150
R+ D++A C ++ KD IEA AR++ S++
Sbjct: 545 VMKTRLEADEVAAQLERCDKENKILKDEMNKEIEA-----ARRQFQSQL 588
>sp|P45187|MUKB_HAEIN Chromosome partition protein MukB OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mukB PE=3 SV=1
Length = 1510
Score = 32.3 bits (72), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 15/148 (10%)
Query: 39 HRLLEPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIH 98
HRL++ L ++A + AE ER +H+ A H+ + + Q++I R + I +
Sbjct: 347 HRLVD----LSREVA-ELAESERTLEVDHQSAVDHLNLVLNALRHQEKITRYQEDIAELT 401
Query: 99 TESDSHIRVLLD----------KIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTS 148
+ V+ D + + E + A D QQA Q+ A Q+ +
Sbjct: 402 ERLEEQKMVVEDANDALEESQAQFEQTEIEIDAVRSQLADYQQALDAQQTRALQYQQAIA 461
Query: 149 KIQQASEALHKARLEVKNLPDLHAELDS 176
+++A A L VKN+ D HAE D+
Sbjct: 462 ALEKAKTLCGLADLSVKNVEDYHAEFDA 489
>sp|Q5BJF6|ODFP2_HUMAN Outer dense fiber protein 2 OS=Homo sapiens GN=ODF2 PE=1 SV=1
Length = 829
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 55 QAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSH------IRVL 108
Q AE +N RL AS M + L A E+ ++KA ++N D++ R+
Sbjct: 497 QTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLE 556
Query: 109 LDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKI 150
D++A C ++ KD IEA AR++ S++
Sbjct: 557 ADEVAAQLERCDKENKILKDEMNKEIEA-----ARRQFQSQL 593
>sp|A3KGV1|ODFP2_MOUSE Outer dense fiber protein 2 OS=Mus musculus GN=Odf2 PE=1 SV=1
Length = 830
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 55 QAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSH------IRVL 108
Q AE +N RL AS M + L A E+ ++KA ++N D++ R+
Sbjct: 497 QTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLE 556
Query: 109 LDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKI 150
D++A C ++ KD IEA AR++ S++
Sbjct: 557 ADEVAAQLERCDKENKMLKDEMNKEIEA-----ARRQFQSQL 593
>sp|Q5ZKK5|ODFP2_CHICK Outer dense fiber protein 2 OS=Gallus gallus GN=ODF2 PE=2 SV=1
Length = 822
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 48 LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRN 96
L DK+ Q E +N RL AS + M E L A E+ ++K+ +RN
Sbjct: 488 LMDKLHQQTTETTSFRMENERLKASVVPMEEKLNQAHVEVQQLKSSVRN 536
>sp|Q2T9U2|ODFP2_BOVIN Outer dense fiber protein 2 OS=Bos taurus GN=ODF2 PE=2 SV=1
Length = 657
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 55 QAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSH------IRVL 108
Q AE +N RL AS M + L A E+ ++KA ++N D++ R+
Sbjct: 497 QTAEYSAFKLENERLKASFAPMEDKLNQAHIEVQQLKASVKNYEGMIDNYKSQVMKTRLE 556
Query: 109 LDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKI 150
D++A C ++ KD IEA AR++ S++
Sbjct: 557 ADEVAAQLERCDKENKILKDEMNKEIEA-----ARRQFQSQL 593
>sp|C5DJH6|SP110_LACTC Spindle pole body component 110 OS=Lachancea thermotolerans (strain
ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=SPC110 PE=3 SV=1
Length = 838
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 37/188 (19%)
Query: 46 PLLEDKIAVQAAEIERLARDNHRL--------AASHITMREDLAAAQQEIPRIKAHIRNI 97
L + K+ ++ EIE L N+RL AA H+ L +Q + ++A + +
Sbjct: 296 SLADQKLQTRSKEIENL---NNRLKSAVREREAAEHL-----LKESQNALRSLRAELSTL 347
Query: 98 HTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQA---HIEAQSLARARQELTSKIQQAS 154
ESD + L +AK +++ ERL++ Q+ A SL + EL+S++Q
Sbjct: 348 RQESDRKLDDL--SVAKEKSERVLKERLEERTSQSERLQQRANSLEQNAAELSSRLQ--- 402
Query: 155 EALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAR 214
L R +K L D EL + Q + L + EK LQA + L G+
Sbjct: 403 --LRDQR--IKALEDEARELQKMNQRIQDLNDGKDSEK---------LQAQNQKLDGLRS 449
Query: 215 EMEKLHAE 222
E+E++ E
Sbjct: 450 EIERIKNE 457
>sp|Q80YF0|MD1L1_CRIGR Mitotic spindle assembly checkpoint protein MAD1 OS=Cricetulus
griseus GN=MAD1L1 PE=2 SV=1
Length = 717
Score = 31.6 bits (70), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 88/189 (46%), Gaps = 24/189 (12%)
Query: 61 RLARDNHRLAASHITMRED-LAAAQQEIPRIKAHIRNIHTES-DSHIRV---------LL 109
RL + + A+ + RED LAAA++ I +K + + + D ++V L
Sbjct: 132 RLCKQSLDAASQQLREREDGLAAARETISSLKGRVSEMQLNAMDQKVQVKRLESEKQELK 191
Query: 110 DKIAKMEADCKAGERLKKDLQQAHIE----AQSLARARQELTSKIQQASEALHKARLEVK 165
+++ + C+ + ++LQ + E Q + Q+L + Q A+ + + E+
Sbjct: 192 EQLELQQRKCQEASQKIQELQASQEERADHEQKIKDLEQKLCLQEQDAA-VVKNMKSELL 250
Query: 166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQ-------AMEKNLVGMAREMEK 218
LP + EL LR+E+ LR E GL + +E LQ M++ LV + E EK
Sbjct: 251 RLPRMERELKRLREENTHLREMKET-NGLLTEELEGLQRKLGRQEKMQEALVDLELEKEK 309
Query: 219 LHAEVVNAE 227
L A++ + E
Sbjct: 310 LLAKLQSWE 318
>sp|Q96A19|C102A_HUMAN Coiled-coil domain-containing protein 102A OS=Homo sapiens
GN=CCDC102A PE=1 SV=2
Length = 550
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 9/153 (5%)
Query: 78 EDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQ 137
ED AA ++E ++ A + D +VLL + A + E+L+ +L Q I+ +
Sbjct: 240 EDTAATEEEASKLTA----LRLRLDESQKVLLKEREDKLALSRNIEKLEGELSQWKIKYE 295
Query: 138 SLARARQELTSKIQQASEALHKARLEVKNLPDLHAEL---DSLRQEHRRLRATFEYEKGL 194
L++ +QE+ ++ EA H+ L + DL EL S+ ++ LR E +
Sbjct: 296 ELSKTKQEMLKQLSILKEA-HQDEL-GRMSEDLEDELGARSSMDRKMAELRGEMERLQAE 353
Query: 195 NIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227
N + + +E +G+ RE +KL A+V + E
Sbjct: 354 NAAEWGRRERLETEKLGLERENKKLRAQVGDLE 386
>sp|Q6AYX5|ODFP2_RAT Outer dense fiber protein 2 OS=Rattus norvegicus GN=Odf2 PE=1 SV=2
Length = 825
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 55 QAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSH------IRVL 108
Q AE +N RL AS M + L A E+ ++KA ++N D++ R+
Sbjct: 492 QTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLE 551
Query: 109 LDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKI 150
D++A C ++ KD IEA AR++ S++
Sbjct: 552 ADEVAAQLERCDKENKMLKDEMNKEIEA-----ARRQFQSQL 588
>sp|Q04948|IFE_BRALA Non-neuronal cytoplasmic intermediate filament protein
OS=Branchiostoma lanceolatum PE=2 SV=1
Length = 464
Score = 31.6 bits (70), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 35/180 (19%)
Query: 57 AEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAK-- 114
AEIERL ++ + + + L+ AQ+EI ++ +H D IR L D++ +
Sbjct: 196 AEIERLKKELDAATMARLDLENKLSTAQEEID----FLKRVH---DEEIRQLQDQLNESL 248
Query: 115 --MEADCKA------GERLKKDLQQAHIEAQSLARARQ------------ELTSKIQQAS 154
+E D +A G L + L++ + + L R + EL + ++ +
Sbjct: 249 TIVEVDSRAASTFAPGPDLTEALREIRTQYEELGRVNREDADVKYKQKFSELAHQRERDN 308
Query: 155 EALHKARLEV----KNLPDLHAELDSLRQEHRRLRATF-EYEKGLNIDNVEQLQAMEKNL 209
EAL AR EV +NL L AE ++L+ ++ L + E E + ++ +E+ QA ++L
Sbjct: 309 EALMTARTEVTELRRNLNSLVAENEALKSKNHALEGSLAELEARMQLE-IEEYQAAIRDL 367
>sp|Q4R8C3|ODFP2_MACFA Outer dense fiber protein 2 OS=Macaca fascicularis GN=ODF2 PE=2
SV=1
Length = 638
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 55 QAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSH------IRVL 108
Q AE +N RL AS M + L A E+ ++KA ++N D++ R+
Sbjct: 478 QTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLE 537
Query: 109 LDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKI 150
D++A C ++ KD IEA AR++ S++
Sbjct: 538 ADEVAAQLERCDKENKILKDEMNKEIEA-----ARRQFQSQL 574
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,701,610
Number of Sequences: 539616
Number of extensions: 5433718
Number of successful extensions: 24521
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 891
Number of HSP's that attempted gapping in prelim test: 23028
Number of HSP's gapped (non-prelim): 2217
length of query: 312
length of database: 191,569,459
effective HSP length: 117
effective length of query: 195
effective length of database: 128,434,387
effective search space: 25044705465
effective search space used: 25044705465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)