Query 021465
Match_columns 312
No_of_seqs 132 out of 145
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 03:10:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021465.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021465hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11637 AmiB activator; Provi 99.0 3.5E-07 7.6E-12 91.0 27.8 88 136-226 161-252 (428)
2 PRK11637 AmiB activator; Provi 98.4 0.00029 6.4E-09 70.3 27.3 80 133-212 169-248 (428)
3 TIGR02169 SMC_prok_A chromosom 98.3 0.00026 5.7E-09 76.8 24.6 25 203-227 472-496 (1164)
4 TIGR02169 SMC_prok_A chromosom 98.2 0.00054 1.2E-08 74.4 24.6 50 48-97 292-341 (1164)
5 TIGR02168 SMC_prok_B chromosom 98.1 0.0009 2E-08 72.3 24.6 16 48-63 689-704 (1179)
6 TIGR02168 SMC_prok_B chromosom 98.1 0.00093 2E-08 72.3 24.5 13 48-60 703-715 (1179)
7 PF09726 Macoilin: Transmembra 98.1 0.0018 3.9E-08 69.1 26.0 102 126-227 544-656 (697)
8 COG4942 Membrane-bound metallo 98.1 0.0034 7.3E-08 63.3 26.0 70 49-118 37-109 (420)
9 PF07888 CALCOCO1: Calcium bin 98.0 0.0018 4E-08 67.1 23.2 53 47-99 140-192 (546)
10 COG1579 Zn-ribbon protein, pos 98.0 0.0011 2.4E-08 62.3 18.6 141 58-202 11-161 (239)
11 PF00038 Filament: Intermediat 97.9 0.0024 5.2E-08 60.6 21.0 115 47-161 8-137 (312)
12 COG4372 Uncharacterized protei 97.9 0.0063 1.4E-07 60.9 23.0 165 53-224 105-283 (499)
13 PF14662 CCDC155: Coiled-coil 97.9 0.0067 1.5E-07 55.4 21.5 163 59-228 10-186 (193)
14 PRK03918 chromosome segregatio 97.7 0.008 1.7E-07 64.4 23.4 75 104-178 215-289 (880)
15 PRK09039 hypothetical protein; 97.7 0.005 1.1E-07 60.4 19.0 58 166-223 138-199 (343)
16 COG1196 Smc Chromosome segrega 97.6 0.015 3.2E-07 65.2 24.3 88 135-225 829-916 (1163)
17 PF08317 Spc7: Spc7 kinetochor 97.6 0.0024 5.1E-08 62.0 15.9 110 120-229 156-266 (325)
18 PF07888 CALCOCO1: Calcium bin 97.6 0.017 3.7E-07 60.0 22.2 28 203-230 360-387 (546)
19 PRK02224 chromosome segregatio 97.6 0.028 6.1E-07 60.5 24.8 67 71-141 206-272 (880)
20 smart00787 Spc7 Spc7 kinetocho 97.6 0.0039 8.5E-08 60.6 16.3 101 123-229 182-286 (312)
21 PF05701 WEMBL: Weak chloropla 97.6 0.017 3.6E-07 59.7 21.8 45 122-166 283-327 (522)
22 PF08317 Spc7: Spc7 kinetochor 97.5 0.0043 9.2E-08 60.2 16.3 35 67-101 152-186 (325)
23 PF00038 Filament: Intermediat 97.5 0.0042 9.1E-08 58.9 15.6 74 123-199 78-151 (312)
24 COG4942 Membrane-bound metallo 97.5 0.077 1.7E-06 53.7 24.9 54 47-100 49-102 (420)
25 KOG0977 Nuclear envelope prote 97.5 0.024 5.3E-07 59.0 21.8 79 132-213 139-217 (546)
26 PHA02562 46 endonuclease subun 97.4 0.061 1.3E-06 54.8 23.6 28 195-222 374-401 (562)
27 KOG0995 Centromere-associated 97.4 0.012 2.7E-07 61.1 18.5 122 102-227 241-366 (581)
28 KOG0161 Myosin class II heavy 97.4 0.025 5.5E-07 66.1 22.8 154 49-202 1385-1538(1930)
29 PRK02224 chromosome segregatio 97.4 0.02 4.4E-07 61.6 20.7 22 168-189 380-401 (880)
30 KOG0161 Myosin class II heavy 97.3 0.046 1E-06 64.0 23.7 30 175-204 1107-1136(1930)
31 PF06818 Fez1: Fez1; InterPro 97.3 0.032 6.9E-07 51.5 18.2 101 124-224 70-201 (202)
32 TIGR01843 type_I_hlyD type I s 97.3 0.06 1.3E-06 52.2 21.3 60 166-225 211-271 (423)
33 PRK09039 hypothetical protein; 97.3 0.024 5.3E-07 55.7 18.4 132 47-188 43-174 (343)
34 PF10174 Cast: RIM-binding pro 97.3 0.03 6.5E-07 60.6 20.1 148 72-227 239-405 (775)
35 PF07111 HCR: Alpha helical co 97.2 0.044 9.4E-07 58.4 20.5 145 76-229 63-212 (739)
36 TIGR00606 rad50 rad50. This fa 97.2 0.031 6.7E-07 63.4 20.9 81 145-228 826-909 (1311)
37 PRK03918 chromosome segregatio 97.2 0.082 1.8E-06 56.8 22.7 42 49-90 192-233 (880)
38 PF09755 DUF2046: Uncharacteri 97.2 0.24 5.3E-06 48.4 23.6 43 61-103 31-73 (310)
39 PF05701 WEMBL: Weak chloropla 97.1 0.11 2.4E-06 53.7 22.2 75 149-226 282-356 (522)
40 TIGR01843 type_I_hlyD type I s 97.1 0.071 1.5E-06 51.7 19.4 63 167-229 205-268 (423)
41 COG1579 Zn-ribbon protein, pos 97.1 0.072 1.6E-06 50.3 18.7 32 115-146 47-78 (239)
42 KOG0980 Actin-binding protein 97.1 0.11 2.3E-06 56.7 22.0 77 138-214 463-543 (980)
43 PHA02562 46 endonuclease subun 97.1 0.16 3.4E-06 51.7 22.5 92 137-228 302-400 (562)
44 PRK04863 mukB cell division pr 97.1 0.11 2.3E-06 60.0 23.2 160 70-231 934-1119(1486)
45 PF09726 Macoilin: Transmembra 97.1 0.043 9.3E-07 58.8 18.9 18 170-187 543-560 (697)
46 PF04849 HAP1_N: HAP1 N-termin 97.1 0.097 2.1E-06 51.1 19.7 38 58-95 83-121 (306)
47 KOG0933 Structural maintenance 97.0 0.089 1.9E-06 58.0 20.9 44 47-90 681-727 (1174)
48 PF07926 TPR_MLP1_2: TPR/MLP1/ 97.0 0.12 2.6E-06 44.0 17.9 34 59-92 5-38 (132)
49 PF12325 TMF_TATA_bd: TATA ele 97.0 0.014 3.1E-07 49.6 11.7 58 125-182 28-85 (120)
50 KOG0250 DNA repair protein RAD 97.0 0.12 2.7E-06 57.3 21.7 155 73-227 290-456 (1074)
51 KOG0977 Nuclear envelope prote 97.0 0.071 1.5E-06 55.6 19.0 101 57-161 113-217 (546)
52 KOG1853 LIS1-interacting prote 97.0 0.11 2.4E-06 49.7 18.5 120 65-190 14-133 (333)
53 PF15619 Lebercilin: Ciliary p 96.9 0.23 4.9E-06 45.4 19.8 27 47-73 16-42 (194)
54 TIGR01000 bacteriocin_acc bact 96.9 0.15 3.3E-06 51.4 20.4 63 166-228 237-312 (457)
55 PF10174 Cast: RIM-binding pro 96.9 0.4 8.7E-06 52.2 24.0 180 48-227 292-492 (775)
56 KOG4643 Uncharacterized coiled 96.9 0.34 7.3E-06 53.7 23.3 102 123-227 491-605 (1195)
57 COG1340 Uncharacterized archae 96.9 0.4 8.8E-06 46.6 21.6 131 79-210 108-245 (294)
58 PRK04778 septation ring format 96.8 0.076 1.7E-06 55.3 18.0 30 72-101 250-279 (569)
59 smart00787 Spc7 Spc7 kinetocho 96.8 0.053 1.1E-06 52.9 15.7 110 119-228 150-260 (312)
60 KOG0963 Transcription factor/C 96.8 0.16 3.5E-06 53.5 19.7 144 43-190 101-274 (629)
61 COG4372 Uncharacterized protei 96.8 0.35 7.5E-06 48.8 21.2 23 258-280 364-386 (499)
62 PF15070 GOLGA2L5: Putative go 96.8 0.21 4.6E-06 52.9 20.9 34 59-92 103-136 (617)
63 KOG0250 DNA repair protein RAD 96.8 0.25 5.4E-06 55.0 21.8 133 47-185 292-435 (1074)
64 KOG4643 Uncharacterized coiled 96.8 0.14 3.1E-06 56.4 19.6 165 59-229 374-545 (1195)
65 KOG0995 Centromere-associated 96.7 0.13 2.9E-06 53.6 18.5 158 47-225 225-396 (581)
66 KOG1029 Endocytic adaptor prot 96.7 0.19 4E-06 54.5 19.8 85 69-153 435-519 (1118)
67 PF12325 TMF_TATA_bd: TATA ele 96.7 0.062 1.3E-06 45.7 13.4 95 119-213 15-109 (120)
68 KOG0964 Structural maintenance 96.7 0.33 7.1E-06 53.7 21.8 108 51-158 693-823 (1200)
69 PF07798 DUF1640: Protein of u 96.7 0.22 4.7E-06 44.4 17.4 15 213-227 137-151 (177)
70 KOG0612 Rho-associated, coiled 96.7 0.28 6E-06 55.2 21.2 31 131-161 606-636 (1317)
71 KOG4674 Uncharacterized conser 96.6 0.45 9.7E-06 55.7 23.4 183 47-231 693-889 (1822)
72 PF12128 DUF3584: Protein of u 96.6 0.43 9.3E-06 54.0 22.8 17 162-178 349-365 (1201)
73 KOG2129 Uncharacterized conser 96.6 1 2.2E-05 45.9 23.1 113 97-209 152-290 (552)
74 PF06160 EzrA: Septation ring 96.6 0.18 4E-06 52.5 18.3 177 49-227 221-406 (560)
75 KOG4674 Uncharacterized conser 96.5 0.23 5E-06 57.9 20.1 144 47-201 1157-1300(1822)
76 PF12128 DUF3584: Protein of u 96.5 0.85 1.8E-05 51.7 24.3 65 124-190 356-420 (1201)
77 PF04111 APG6: Autophagy prote 96.4 0.058 1.3E-06 52.5 13.0 122 74-227 12-133 (314)
78 KOG0996 Structural maintenance 96.4 0.73 1.6E-05 51.9 22.4 26 134-159 507-532 (1293)
79 PF04849 HAP1_N: HAP1 N-termin 96.4 0.69 1.5E-05 45.3 19.9 30 61-90 94-123 (306)
80 PF10186 Atg14: UV radiation r 96.4 0.3 6.5E-06 45.4 17.0 20 73-92 22-41 (302)
81 PF04156 IncA: IncA protein; 96.4 0.12 2.7E-06 45.7 13.8 32 67-98 77-108 (191)
82 PF10473 CENP-F_leu_zip: Leuci 96.4 0.41 9E-06 41.8 16.5 23 168-190 76-98 (140)
83 PRK04863 mukB cell division pr 96.4 1 2.2E-05 52.3 24.2 25 203-227 452-476 (1486)
84 PF15070 GOLGA2L5: Putative go 96.3 0.67 1.4E-05 49.3 21.1 59 97-155 116-174 (617)
85 TIGR03007 pepcterm_ChnLen poly 96.3 0.49 1.1E-05 47.8 19.5 25 68-92 165-189 (498)
86 PF09787 Golgin_A5: Golgin sub 96.3 0.59 1.3E-05 48.2 20.2 91 67-159 217-313 (511)
87 PLN03229 acetyl-coenzyme A car 96.3 0.25 5.4E-06 53.2 17.8 43 43-89 455-497 (762)
88 KOG0971 Microtubule-associated 96.3 0.71 1.5E-05 50.9 21.1 164 59-227 257-430 (1243)
89 PF05667 DUF812: Protein of un 96.3 0.59 1.3E-05 49.4 20.4 182 47-231 318-515 (594)
90 TIGR02680 conserved hypothetic 96.3 1.1 2.3E-05 51.6 23.9 31 51-81 743-773 (1353)
91 PF10186 Atg14: UV radiation r 96.3 0.98 2.1E-05 41.9 19.7 24 201-224 127-150 (302)
92 PF15619 Lebercilin: Ciliary p 96.2 0.93 2E-05 41.5 20.6 117 110-226 50-190 (194)
93 KOG0971 Microtubule-associated 96.2 0.6 1.3E-05 51.5 19.9 43 59-101 370-412 (1243)
94 KOG4809 Rab6 GTPase-interactin 96.2 0.52 1.1E-05 49.3 18.7 65 56-120 330-404 (654)
95 PF13514 AAA_27: AAA domain 96.1 1.6 3.6E-05 48.9 23.9 97 105-201 728-837 (1111)
96 PF08614 ATG16: Autophagy prot 96.1 0.081 1.8E-06 47.7 11.4 110 45-158 69-182 (194)
97 KOG2129 Uncharacterized conser 96.1 0.98 2.1E-05 46.1 19.4 58 58-115 51-112 (552)
98 PF09730 BicD: Microtubule-ass 96.0 0.48 1E-05 51.2 18.1 95 124-225 80-181 (717)
99 PF10473 CENP-F_leu_zip: Leuci 96.0 0.98 2.1E-05 39.5 17.7 32 59-90 12-43 (140)
100 PF15035 Rootletin: Ciliary ro 96.0 1 2.2E-05 40.8 17.7 109 105-226 59-178 (182)
101 PF05667 DUF812: Protein of un 96.0 1.4 3E-05 46.7 21.2 46 47-92 332-377 (594)
102 PLN03229 acetyl-coenzyme A car 96.0 0.37 8E-06 52.0 16.9 136 47-182 433-614 (762)
103 KOG0933 Structural maintenance 95.9 2.8 6E-05 46.9 23.6 42 144-188 818-859 (1174)
104 PF10481 CENP-F_N: Cenp-F N-te 95.9 0.21 4.5E-06 48.2 13.5 121 136-259 27-161 (307)
105 PF12718 Tropomyosin_1: Tropom 95.9 0.8 1.7E-05 39.8 16.2 18 145-162 77-94 (143)
106 KOG4807 F-actin binding protei 95.9 2.2 4.8E-05 43.4 21.1 141 47-187 249-436 (593)
107 KOG0982 Centrosomal protein Nu 95.9 2.1 4.6E-05 43.7 21.1 49 47-95 219-267 (502)
108 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.9 0.2 4.3E-06 42.7 12.1 66 155-220 49-118 (132)
109 COG5185 HEC1 Protein involved 95.9 0.71 1.5E-05 47.7 17.8 27 123-149 333-359 (622)
110 KOG0979 Structural maintenance 95.9 1.3 2.8E-05 49.3 20.8 164 51-214 175-353 (1072)
111 PF05622 HOOK: HOOK protein; 95.9 0.0022 4.7E-08 68.2 0.0 67 72-138 240-309 (713)
112 PRK04778 septation ring format 95.9 1.9 4.2E-05 45.0 21.6 101 123-227 379-503 (569)
113 KOG0980 Actin-binding protein 95.9 2.4 5.3E-05 46.7 22.5 85 95-182 434-518 (980)
114 PF09730 BicD: Microtubule-ass 95.8 3.7 7.9E-05 44.6 24.3 35 128-162 101-135 (717)
115 TIGR02680 conserved hypothetic 95.8 2.7 5.8E-05 48.5 23.9 19 48-66 747-765 (1353)
116 PF08614 ATG16: Autophagy prot 95.8 0.16 3.4E-06 45.9 11.6 112 74-202 70-181 (194)
117 PF15066 CAGE1: Cancer-associa 95.7 1.4 3E-05 45.5 19.1 145 74-221 313-467 (527)
118 KOG1029 Endocytic adaptor prot 95.7 1.1 2.5E-05 48.7 19.2 66 125-190 435-504 (1118)
119 KOG4673 Transcription factor T 95.7 0.36 7.9E-06 51.7 15.5 53 128-180 867-919 (961)
120 PF12718 Tropomyosin_1: Tropom 95.7 1.3 2.8E-05 38.6 17.3 22 167-188 75-96 (143)
121 KOG0976 Rho/Rac1-interacting s 95.7 1.4 3E-05 48.3 19.6 159 64-226 65-233 (1265)
122 PF09787 Golgin_A5: Golgin sub 95.7 0.93 2E-05 46.8 18.2 79 106-185 158-241 (511)
123 PF11559 ADIP: Afadin- and alp 95.7 0.71 1.5E-05 39.7 14.8 32 61-92 42-73 (151)
124 PF09789 DUF2353: Uncharacteri 95.6 0.31 6.7E-06 47.9 13.8 98 62-162 77-175 (319)
125 PF10168 Nup88: Nuclear pore c 95.6 1 2.2E-05 48.6 18.9 81 146-229 630-714 (717)
126 KOG4593 Mitotic checkpoint pro 95.6 4 8.6E-05 44.0 22.6 66 162-227 248-319 (716)
127 TIGR01005 eps_transp_fam exopo 95.6 1.2 2.7E-05 47.5 19.2 54 65-118 195-252 (754)
128 PRK10246 exonuclease subunit S 95.6 5.4 0.00012 44.8 25.7 49 47-95 527-575 (1047)
129 PF11932 DUF3450: Protein of u 95.5 0.57 1.2E-05 43.7 14.8 54 123-176 52-105 (251)
130 COG3883 Uncharacterized protei 95.5 2.4 5.3E-05 40.7 22.3 155 47-208 28-208 (265)
131 COG0419 SbcC ATPase involved i 95.5 4.6 9.9E-05 44.5 23.8 52 174-225 690-744 (908)
132 KOG0249 LAR-interacting protei 95.5 0.29 6.3E-06 52.6 13.9 37 47-83 95-131 (916)
133 PF06785 UPF0242: Uncharacteri 95.5 0.42 9.2E-06 47.3 14.1 34 134-167 99-132 (401)
134 COG1340 Uncharacterized archae 95.5 2.7 5.9E-05 41.0 21.6 69 120-188 107-181 (294)
135 PF13851 GAS: Growth-arrest sp 95.3 2.3 4.9E-05 39.0 19.6 27 203-229 146-172 (201)
136 cd07651 F-BAR_PombeCdc15_like 95.3 2.4 5.1E-05 39.1 19.2 34 59-92 62-96 (236)
137 PF13514 AAA_27: AAA domain 95.3 2 4.4E-05 48.2 20.3 108 47-158 154-273 (1111)
138 TIGR03017 EpsF chain length de 95.2 2 4.3E-05 42.7 18.1 31 71-101 171-201 (444)
139 PF14662 CCDC155: Coiled-coil 95.1 2.7 5.8E-05 38.7 21.1 43 48-90 20-62 (193)
140 PRK10361 DNA recombination pro 95.1 4.9 0.00011 41.7 21.7 91 134-224 99-196 (475)
141 PF05557 MAD: Mitotic checkpoi 95.0 0.0062 1.3E-07 64.9 0.0 91 75-165 118-209 (722)
142 PF13870 DUF4201: Domain of un 95.0 2.3 5E-05 37.6 20.5 60 168-227 101-165 (177)
143 PRK12704 phosphodiesterase; Pr 95.0 2 4.4E-05 44.7 18.2 37 166-202 111-147 (520)
144 KOG0946 ER-Golgi vesicle-tethe 95.0 1.1 2.3E-05 49.0 16.4 146 53-202 733-878 (970)
145 PF09728 Taxilin: Myosin-like 95.0 3.9 8.4E-05 39.9 20.8 103 47-160 19-122 (309)
146 PF13870 DUF4201: Domain of un 95.0 2.4 5.3E-05 37.4 19.8 161 56-229 5-174 (177)
147 COG5185 HEC1 Protein involved 94.9 0.97 2.1E-05 46.8 15.1 145 74-229 252-404 (622)
148 KOG0994 Extracellular matrix g 94.9 2.3 4.9E-05 48.3 18.7 36 196-231 1706-1741(1758)
149 KOG4673 Transcription factor T 94.9 4.3 9.4E-05 43.9 20.2 45 72-118 424-468 (961)
150 TIGR01000 bacteriocin_acc bact 94.9 3.9 8.5E-05 41.3 19.5 65 166-230 244-321 (457)
151 COG1842 PspA Phage shock prote 94.9 1.7 3.8E-05 40.6 15.6 106 122-229 33-142 (225)
152 PRK09841 cryptic autophosphory 94.8 0.76 1.6E-05 49.3 15.0 109 72-187 268-385 (726)
153 PF09731 Mitofilin: Mitochondr 94.8 3.4 7.4E-05 42.9 19.4 44 170-213 346-398 (582)
154 PF15397 DUF4618: Domain of un 94.8 3.9 8.5E-05 39.2 22.3 41 72-112 7-47 (258)
155 KOG4807 F-actin binding protei 94.8 4.2 9.2E-05 41.5 19.0 104 47-150 353-479 (593)
156 COG2433 Uncharacterized conser 94.8 2.1 4.6E-05 45.5 17.4 90 128-227 416-508 (652)
157 COG1842 PspA Phage shock prote 94.7 3.3 7.2E-05 38.8 17.2 44 74-117 27-73 (225)
158 PF05010 TACC: Transforming ac 94.7 3.7 8E-05 38.1 22.9 54 122-178 71-124 (207)
159 TIGR03319 YmdA_YtgF conserved 94.6 3 6.4E-05 43.4 18.2 37 166-202 105-141 (514)
160 PF05622 HOOK: HOOK protein; 94.6 0.0094 2E-07 63.5 0.0 170 47-226 236-417 (713)
161 COG0419 SbcC ATPase involved i 94.6 9.1 0.0002 42.2 23.5 34 68-101 271-304 (908)
162 PF05557 MAD: Mitotic checkpoi 94.6 0.0098 2.1E-07 63.4 0.0 62 166-227 258-325 (722)
163 KOG0612 Rho-associated, coiled 94.5 4.7 0.0001 45.9 20.2 181 47-227 438-650 (1317)
164 PF04949 Transcrip_act: Transc 94.5 2.1 4.7E-05 38.0 14.3 89 123-221 52-147 (159)
165 TIGR03007 pepcterm_ChnLen poly 94.4 6.4 0.00014 39.9 21.5 35 67-101 157-191 (498)
166 KOG0243 Kinesin-like protein [ 94.4 4 8.6E-05 45.8 19.3 131 47-187 373-512 (1041)
167 PF04156 IncA: IncA protein; 94.4 1.7 3.7E-05 38.4 13.9 10 150-159 160-169 (191)
168 COG1382 GimC Prefoldin, chaper 94.3 0.76 1.7E-05 39.2 10.9 25 203-227 87-111 (119)
169 PF10498 IFT57: Intra-flagella 94.3 3.1 6.8E-05 41.5 16.9 136 83-229 196-350 (359)
170 TIGR03185 DNA_S_dndD DNA sulfu 94.3 8.4 0.00018 40.8 22.0 43 50-92 209-251 (650)
171 TIGR01005 eps_transp_fam exopo 94.3 3.2 6.8E-05 44.5 18.0 32 71-102 194-225 (754)
172 KOG1853 LIS1-interacting prote 94.2 5.6 0.00012 38.4 17.6 134 69-227 50-184 (333)
173 PF14197 Cep57_CLD_2: Centroso 94.2 0.4 8.6E-06 37.1 8.2 64 67-130 1-64 (69)
174 PF04012 PspA_IM30: PspA/IM30 94.2 3.2 6.9E-05 37.7 15.6 19 203-221 122-140 (221)
175 KOG0964 Structural maintenance 94.2 6.7 0.00015 43.9 20.1 128 104-231 231-373 (1200)
176 PF10481 CENP-F_N: Cenp-F N-te 94.1 3.2 6.9E-05 40.3 15.8 77 115-194 55-131 (307)
177 PRK00106 hypothetical protein; 94.1 7.6 0.00017 40.8 19.8 37 166-202 126-162 (535)
178 PRK10929 putative mechanosensi 94.1 7.3 0.00016 44.3 20.9 46 47-92 106-158 (1109)
179 TIGR03017 EpsF chain length de 94.0 4 8.7E-05 40.5 17.2 121 67-189 174-328 (444)
180 PF05010 TACC: Transforming ac 94.0 5.2 0.00011 37.1 18.2 32 131-162 126-157 (207)
181 KOG1937 Uncharacterized conser 93.9 8.9 0.00019 39.7 21.2 60 59-119 334-405 (521)
182 TIGR00634 recN DNA repair prot 93.9 2.7 5.7E-05 43.8 16.3 56 166-225 323-378 (563)
183 PF06160 EzrA: Septation ring 93.8 10 0.00022 39.8 22.5 84 146-229 250-335 (560)
184 PF10168 Nup88: Nuclear pore c 93.8 3.3 7.1E-05 44.9 17.0 20 203-222 695-714 (717)
185 PF08826 DMPK_coil: DMPK coile 93.7 0.48 1E-05 35.9 7.6 32 114-145 5-36 (61)
186 PRK10884 SH3 domain-containing 93.7 1.1 2.5E-05 41.3 11.6 23 68-90 90-112 (206)
187 KOG3647 Predicted coiled-coil 93.6 7.5 0.00016 37.8 17.9 135 76-214 51-203 (338)
188 PF04012 PspA_IM30: PspA/IM30 93.6 5.5 0.00012 36.2 20.5 28 74-101 26-53 (221)
189 PF13851 GAS: Growth-arrest sp 93.6 5.8 0.00013 36.3 20.5 97 53-160 44-140 (201)
190 PRK10246 exonuclease subunit S 93.5 9 0.00019 43.1 20.5 97 126-226 776-879 (1047)
191 TIGR03794 NHPM_micro_HlyD NHPM 93.5 6.7 0.00014 39.0 17.7 21 203-223 230-250 (421)
192 PRK10361 DNA recombination pro 93.5 11 0.00023 39.2 20.9 31 172-202 154-184 (475)
193 PF04912 Dynamitin: Dynamitin 93.5 4.2 9E-05 40.5 16.1 84 73-157 263-352 (388)
194 KOG4687 Uncharacterized coiled 93.5 7.6 0.00017 38.0 17.1 102 54-165 34-135 (389)
195 PF15294 Leu_zip: Leucine zipp 93.5 1.9 4E-05 41.8 13.1 139 52-224 127-277 (278)
196 KOG0921 Dosage compensation co 93.4 0.18 4E-06 55.5 6.9 38 181-218 1098-1138(1282)
197 PF07798 DUF1640: Protein of u 93.4 5.4 0.00012 35.5 18.4 23 203-225 134-156 (177)
198 PRK11281 hypothetical protein; 93.4 7.8 0.00017 44.1 19.7 27 73-99 82-108 (1113)
199 TIGR00634 recN DNA repair prot 93.4 11 0.00025 39.2 20.9 17 208-224 347-363 (563)
200 PF11559 ADIP: Afadin- and alp 93.4 4.7 0.0001 34.7 16.4 19 173-191 116-134 (151)
201 KOG0976 Rho/Rac1-interacting s 93.3 16 0.00034 40.6 21.6 37 170-206 264-300 (1265)
202 KOG4603 TBP-1 interacting prot 93.3 4.6 0.0001 36.9 14.4 97 127-224 79-179 (201)
203 KOG1937 Uncharacterized conser 93.3 11 0.00025 38.9 20.2 25 203-227 385-409 (521)
204 PF06008 Laminin_I: Laminin Do 93.2 7.5 0.00016 36.5 21.0 140 47-202 21-165 (264)
205 PF00261 Tropomyosin: Tropomyo 93.2 7.2 0.00016 36.2 19.8 24 203-226 193-216 (237)
206 PF14197 Cep57_CLD_2: Centroso 93.2 1.1 2.3E-05 34.7 8.9 61 123-186 8-68 (69)
207 COG2433 Uncharacterized conser 93.1 1.7 3.7E-05 46.1 13.1 24 166-189 475-498 (652)
208 PRK12704 phosphodiesterase; Pr 93.1 13 0.00028 38.8 19.5 11 82-92 61-71 (520)
209 KOG0993 Rab5 GTPase effector R 93.0 12 0.00026 38.4 20.3 46 175-220 437-489 (542)
210 PRK11519 tyrosine kinase; Prov 93.0 2.4 5.1E-05 45.6 14.4 48 72-119 268-320 (719)
211 KOG4603 TBP-1 interacting prot 92.9 3.2 6.9E-05 37.9 12.9 103 79-202 80-182 (201)
212 KOG0994 Extracellular matrix g 92.9 12 0.00025 43.0 19.5 21 203-223 1727-1747(1758)
213 PF11932 DUF3450: Protein of u 92.9 8.1 0.00018 36.0 16.7 77 132-211 40-116 (251)
214 KOG2264 Exostosin EXT1L [Signa 92.9 0.67 1.4E-05 49.0 9.7 61 123-186 82-142 (907)
215 TIGR03319 YmdA_YtgF conserved 92.9 14 0.0003 38.6 19.4 11 302-312 244-254 (514)
216 PF06008 Laminin_I: Laminin Do 92.8 8.5 0.00018 36.1 17.6 46 47-92 56-101 (264)
217 PRK10884 SH3 domain-containing 92.8 1.7 3.6E-05 40.2 11.4 28 73-100 88-115 (206)
218 KOG0999 Microtubule-associated 92.7 13 0.00029 39.5 18.7 80 64-146 43-140 (772)
219 PF05911 DUF869: Plant protein 92.7 8.9 0.00019 42.0 18.3 81 133-216 637-717 (769)
220 KOG0978 E3 ubiquitin ligase in 92.7 17 0.00038 39.4 21.8 29 203-231 597-625 (698)
221 PF10212 TTKRSYEDQ: Predicted 92.7 5.2 0.00011 41.8 15.7 56 168-226 458-513 (518)
222 PRK00409 recombination and DNA 92.7 3.5 7.5E-05 45.0 15.3 48 114-161 517-564 (782)
223 PF15397 DUF4618: Domain of un 92.7 9.9 0.00022 36.5 21.6 24 208-231 201-224 (258)
224 COG3206 GumC Uncharacterized p 92.6 2.5 5.4E-05 42.7 13.4 42 146-187 347-388 (458)
225 PRK00106 hypothetical protein; 92.6 15 0.00033 38.6 19.6 11 302-312 265-275 (535)
226 PF08581 Tup_N: Tup N-terminal 92.6 1 2.2E-05 35.7 8.3 58 167-225 6-75 (79)
227 TIGR02971 heterocyst_DevB ABC 92.5 7.6 0.00016 36.9 15.9 14 214-227 186-199 (327)
228 KOG0249 LAR-interacting protei 92.5 6.4 0.00014 42.8 16.4 39 116-154 219-257 (916)
229 PRK03947 prefoldin subunit alp 92.4 2.5 5.3E-05 35.9 11.2 43 188-230 96-138 (140)
230 PF04912 Dynamitin: Dynamitin 92.4 4.1 9E-05 40.5 14.4 77 149-225 296-386 (388)
231 PF09304 Cortex-I_coil: Cortex 92.3 6 0.00013 33.3 14.4 72 68-160 6-77 (107)
232 PF15294 Leu_zip: Leucine zipp 92.3 5.5 0.00012 38.6 14.5 28 200-227 215-242 (278)
233 PF04111 APG6: Autophagy prote 92.2 3.4 7.3E-05 40.3 13.2 94 144-240 46-142 (314)
234 PF00769 ERM: Ezrin/radixin/mo 92.2 7.6 0.00016 36.6 15.1 19 207-225 110-128 (246)
235 PF06785 UPF0242: Uncharacteri 92.1 4.3 9.4E-05 40.5 13.7 98 57-162 75-176 (401)
236 TIGR02977 phageshock_pspA phag 92.1 8.7 0.00019 35.3 15.1 35 125-159 36-70 (219)
237 PLN02939 transferase, transfer 92.1 11 0.00025 42.2 18.4 80 77-159 225-311 (977)
238 KOG4677 Golgi integral membran 92.1 7.8 0.00017 40.1 15.8 45 107-151 235-292 (554)
239 PF02403 Seryl_tRNA_N: Seryl-t 92.1 1.9 4.1E-05 35.0 9.7 73 106-186 16-88 (108)
240 cd00632 Prefoldin_beta Prefold 92.1 2.6 5.7E-05 34.3 10.5 24 203-226 80-103 (105)
241 TIGR03794 NHPM_micro_HlyD NHPM 92.1 6.3 0.00014 39.2 15.2 17 201-217 235-251 (421)
242 PF00261 Tropomyosin: Tropomyo 92.0 10 0.00022 35.2 18.6 17 145-161 117-133 (237)
243 KOG2991 Splicing regulator [RN 91.9 13 0.00028 36.1 21.7 144 80-229 138-300 (330)
244 KOG3478 Prefoldin subunit 6, K 91.7 5.2 0.00011 34.0 11.9 26 109-134 25-50 (120)
245 PF07106 TBPIP: Tat binding pr 91.7 3.5 7.6E-05 36.1 11.6 62 131-193 76-137 (169)
246 PF06818 Fez1: Fez1; InterPro 91.7 5.8 0.00013 36.8 13.3 19 207-225 131-149 (202)
247 TIGR02977 phageshock_pspA phag 91.6 11 0.00023 34.7 18.9 41 76-116 29-72 (219)
248 PF14988 DUF4515: Domain of un 91.6 11 0.00024 34.8 17.8 67 69-136 52-119 (206)
249 PRK10698 phage shock protein P 91.6 11 0.00025 34.9 18.3 10 105-114 61-70 (222)
250 PF05911 DUF869: Plant protein 91.5 25 0.00055 38.6 20.6 86 94-182 61-151 (769)
251 PF14362 DUF4407: Domain of un 91.4 13 0.00029 35.3 16.6 36 172-207 218-253 (301)
252 KOG0999 Microtubule-associated 91.4 12 0.00025 39.9 16.5 134 70-224 113-253 (772)
253 PF07111 HCR: Alpha helical co 91.4 24 0.00053 38.3 23.1 138 49-190 65-215 (739)
254 KOG0018 Structural maintenance 91.4 19 0.0004 40.9 18.9 160 69-228 158-352 (1141)
255 PF09755 DUF2046: Uncharacteri 91.3 16 0.00035 36.0 24.1 22 203-224 181-202 (310)
256 PF01576 Myosin_tail_1: Myosin 91.2 0.061 1.3E-06 58.8 0.0 136 92-227 208-348 (859)
257 KOG0239 Kinesin (KAR3 subfamil 91.2 15 0.00034 39.6 17.8 61 166-227 249-309 (670)
258 PRK09343 prefoldin subunit bet 91.2 4.6 0.0001 34.1 11.4 35 104-138 22-56 (121)
259 PF10146 zf-C4H2: Zinc finger- 91.2 7 0.00015 36.8 13.6 34 128-161 33-66 (230)
260 PF05266 DUF724: Protein of un 91.2 7.4 0.00016 35.5 13.4 90 130-229 89-181 (190)
261 PF14992 TMCO5: TMCO5 family 91.1 11 0.00025 36.5 15.2 34 57-90 11-44 (280)
262 PF10234 Cluap1: Clusterin-ass 91.1 15 0.00033 35.4 16.6 30 172-201 197-226 (267)
263 PF00769 ERM: Ezrin/radixin/mo 90.9 14 0.00031 34.7 15.5 22 206-227 102-123 (246)
264 KOG1962 B-cell receptor-associ 90.8 3.7 7.9E-05 38.5 11.2 55 170-224 156-210 (216)
265 PF10498 IFT57: Intra-flagella 90.8 9.5 0.00021 38.1 14.9 58 104-161 249-307 (359)
266 KOG4360 Uncharacterized coiled 90.7 20 0.00043 37.8 17.2 29 73-101 161-189 (596)
267 TIGR01010 BexC_CtrB_KpsE polys 90.6 6.3 0.00014 38.4 13.3 59 166-224 243-309 (362)
268 PRK10869 recombination and rep 90.5 10 0.00023 39.6 15.6 101 120-224 268-372 (553)
269 KOG0979 Structural maintenance 90.5 17 0.00037 40.9 17.5 32 147-178 254-285 (1072)
270 PF01576 Myosin_tail_1: Myosin 90.4 0.08 1.7E-06 57.9 0.0 109 120-231 525-633 (859)
271 PRK09343 prefoldin subunit bet 90.3 7.5 0.00016 32.8 11.9 29 200-228 85-113 (121)
272 TIGR00998 8a0101 efflux pump m 90.3 11 0.00023 35.8 14.4 18 172-189 146-163 (334)
273 PRK06569 F0F1 ATP synthase sub 90.3 6.6 0.00014 34.9 11.9 100 47-158 38-138 (155)
274 PF03962 Mnd1: Mnd1 family; I 90.2 3.9 8.4E-05 37.1 10.7 18 172-189 135-152 (188)
275 PF10146 zf-C4H2: Zinc finger- 90.2 16 0.00035 34.4 15.1 15 208-222 89-103 (230)
276 PF15450 DUF4631: Domain of un 90.0 28 0.0006 36.6 19.7 123 90-224 381-503 (531)
277 TIGR02971 heterocyst_DevB ABC 90.0 12 0.00026 35.6 14.5 32 200-233 179-210 (327)
278 PF05483 SCP-1: Synaptonemal c 90.0 33 0.00071 37.4 19.7 34 76-109 375-411 (786)
279 PRK10929 putative mechanosensi 90.0 39 0.00085 38.7 20.3 28 69-96 63-90 (1109)
280 PF03915 AIP3: Actin interacti 89.7 14 0.0003 37.9 15.2 151 77-227 150-319 (424)
281 PF09789 DUF2353: Uncharacteri 89.5 23 0.0005 35.0 19.4 87 141-227 126-223 (319)
282 PF05837 CENP-H: Centromere pr 89.5 8.3 0.00018 31.8 11.2 75 120-198 10-84 (106)
283 TIGR03752 conj_TIGR03752 integ 89.4 4.1 8.8E-05 42.2 11.2 34 59-92 47-80 (472)
284 PF05278 PEARLI-4: Arabidopsis 89.4 11 0.00024 36.4 13.5 75 111-188 150-230 (269)
285 PF09486 HrpB7: Bacterial type 89.4 15 0.00033 32.7 17.8 114 60-189 11-124 (158)
286 TIGR02338 gimC_beta prefoldin, 89.3 4.5 9.9E-05 33.3 9.6 39 104-142 18-56 (110)
287 TIGR02338 gimC_beta prefoldin, 89.2 6.9 0.00015 32.2 10.6 22 203-224 84-105 (110)
288 KOG0804 Cytoplasmic Zn-finger 89.2 14 0.00031 38.2 14.7 10 46-55 324-333 (493)
289 PF15254 CCDC14: Coiled-coil d 89.1 14 0.00029 40.6 15.2 13 56-68 355-367 (861)
290 KOG4403 Cell surface glycoprot 89.1 15 0.00033 37.9 14.7 51 179-229 361-419 (575)
291 PRK10869 recombination and rep 89.1 32 0.0007 36.1 18.9 72 47-118 145-223 (553)
292 PRK10476 multidrug resistance 89.0 21 0.00045 34.5 15.5 25 203-227 186-210 (346)
293 PF03962 Mnd1: Mnd1 family; I 89.0 3.4 7.3E-05 37.5 9.3 35 168-202 106-140 (188)
294 PRK10698 phage shock protein P 88.8 20 0.00043 33.3 21.4 85 69-153 50-146 (222)
295 KOG0978 E3 ubiquitin ligase in 88.8 39 0.00085 36.8 22.9 11 217-227 604-614 (698)
296 PF15066 CAGE1: Cancer-associa 88.8 33 0.00071 35.8 19.3 71 134-209 449-519 (527)
297 PRK11546 zraP zinc resistance 88.8 6.4 0.00014 34.7 10.5 43 142-184 66-108 (143)
298 TIGR01069 mutS2 MutS2 family p 88.7 11 0.00023 41.3 14.5 8 255-262 630-637 (771)
299 COG1730 GIM5 Predicted prefold 88.7 7.1 0.00015 34.4 10.8 46 186-231 94-139 (145)
300 KOG0946 ER-Golgi vesicle-tethe 88.7 44 0.00096 37.1 18.9 31 67-97 667-697 (970)
301 KOG2264 Exostosin EXT1L [Signa 88.7 2.5 5.4E-05 44.9 9.2 66 119-187 85-150 (907)
302 PF14817 HAUS5: HAUS augmin-li 88.5 25 0.00055 37.8 16.8 134 82-224 264-413 (632)
303 KOG4687 Uncharacterized coiled 88.5 15 0.00033 36.0 13.7 102 55-162 88-202 (389)
304 PRK11519 tyrosine kinase; Prov 88.5 10 0.00022 40.8 14.0 17 203-219 380-396 (719)
305 smart00502 BBC B-Box C-termina 88.4 11 0.00024 30.0 14.7 19 207-225 79-97 (127)
306 KOG4403 Cell surface glycoprot 88.4 9.1 0.0002 39.5 12.7 19 203-221 357-375 (575)
307 cd00890 Prefoldin Prefoldin is 88.3 9.2 0.0002 31.3 10.9 25 201-225 102-126 (129)
308 PF12252 SidE: Dot/Icm substra 88.3 33 0.00072 39.2 17.7 160 66-226 1119-1310(1439)
309 cd07647 F-BAR_PSTPIP The F-BAR 88.2 22 0.00047 33.0 18.4 32 171-202 152-183 (239)
310 PF04728 LPP: Lipoprotein leuc 88.2 2.3 5E-05 31.9 6.3 42 146-190 8-49 (56)
311 KOG4572 Predicted DNA-binding 88.1 33 0.00072 38.3 17.2 65 54-121 992-1063(1424)
312 PRK11546 zraP zinc resistance 88.1 1.4 2.9E-05 38.8 5.9 13 174-186 91-103 (143)
313 TIGR01010 BexC_CtrB_KpsE polys 88.1 6.9 0.00015 38.1 11.5 20 174-193 244-263 (362)
314 PF06810 Phage_GP20: Phage min 88.1 4.3 9.2E-05 35.8 9.1 62 128-189 14-75 (155)
315 KOG0963 Transcription factor/C 87.9 42 0.00092 36.0 22.1 54 169-225 289-342 (629)
316 PRK11281 hypothetical protein; 87.8 57 0.0012 37.4 21.9 35 191-225 283-317 (1113)
317 COG0497 RecN ATPase involved i 87.8 31 0.00067 36.6 16.6 54 167-224 320-373 (557)
318 KOG3478 Prefoldin subunit 6, K 87.8 16 0.00035 31.1 13.3 98 127-230 12-113 (120)
319 PF10234 Cluap1: Clusterin-ass 87.7 16 0.00034 35.3 13.4 40 123-162 172-211 (267)
320 PF14915 CCDC144C: CCDC144C pr 87.7 30 0.00065 34.0 18.7 28 196-223 147-174 (305)
321 KOG0804 Cytoplasmic Zn-finger 87.4 24 0.00053 36.5 15.1 34 128-161 362-395 (493)
322 PF12329 TMF_DNA_bd: TATA elem 87.3 7.5 0.00016 30.2 9.1 55 97-161 6-60 (74)
323 KOG1103 Predicted coiled-coil 87.3 32 0.0007 34.8 15.5 23 205-227 243-265 (561)
324 COG5293 Predicted ATPase [Gene 87.2 31 0.00067 36.1 15.6 74 85-162 320-393 (591)
325 PF07106 TBPIP: Tat binding pr 87.1 6.6 0.00014 34.4 9.8 65 122-187 74-138 (169)
326 PLN02939 transferase, transfer 87.1 55 0.0012 37.0 18.7 100 58-161 227-344 (977)
327 TIGR03752 conj_TIGR03752 integ 86.9 11 0.00024 39.0 12.6 16 146-161 64-79 (472)
328 PF09304 Cortex-I_coil: Cortex 86.9 18 0.00038 30.5 12.0 67 126-202 22-88 (107)
329 PF06705 SF-assemblin: SF-asse 86.8 27 0.00058 32.5 23.7 60 142-203 122-181 (247)
330 PF08647 BRE1: BRE1 E3 ubiquit 86.8 15 0.00033 29.7 12.6 48 166-217 46-93 (96)
331 COG4477 EzrA Negative regulato 86.7 40 0.00087 35.7 16.4 100 73-178 220-336 (570)
332 KOG4657 Uncharacterized conser 86.7 23 0.00049 33.7 13.3 36 106-141 44-79 (246)
333 TIGR02231 conserved hypothetic 86.6 6 0.00013 40.7 10.6 28 200-227 145-172 (525)
334 PRK03598 putative efflux pump 86.5 25 0.00054 33.6 14.2 26 67-92 77-102 (331)
335 PF14992 TMCO5: TMCO5 family 86.5 12 0.00025 36.4 11.8 34 62-95 9-42 (280)
336 cd07673 F-BAR_FCHO2 The F-BAR 86.5 31 0.00066 32.9 17.0 30 62-91 72-101 (269)
337 cd07666 BAR_SNX7 The Bin/Amphi 86.4 31 0.00066 32.8 18.0 90 87-189 112-201 (243)
338 KOG0962 DNA repair protein RAD 86.2 55 0.0012 38.0 18.4 28 65-92 734-761 (1294)
339 PF06120 Phage_HK97_TLTM: Tail 86.2 33 0.00072 33.7 14.8 62 125-189 39-105 (301)
340 PRK14474 F0F1 ATP synthase sub 86.0 17 0.00037 34.3 12.6 26 108-133 34-59 (250)
341 PF02050 FliJ: Flagellar FliJ 86.0 15 0.00032 28.8 14.7 26 76-101 3-28 (123)
342 KOG0962 DNA repair protein RAD 85.8 64 0.0014 37.5 18.6 89 74-162 822-920 (1294)
343 PRK13453 F0F1 ATP synthase sub 85.7 25 0.00053 31.1 13.6 86 109-199 48-134 (173)
344 TIGR00414 serS seryl-tRNA synt 85.4 5.9 0.00013 40.1 9.6 28 198-225 74-101 (418)
345 TIGR02231 conserved hypothetic 85.3 9.3 0.0002 39.3 11.2 17 76-92 76-92 (525)
346 cd00632 Prefoldin_beta Prefold 85.2 19 0.00041 29.3 11.8 28 105-132 15-42 (105)
347 PF12329 TMF_DNA_bd: TATA elem 85.2 9.8 0.00021 29.6 8.7 55 166-220 13-67 (74)
348 PF13094 CENP-Q: CENP-Q, a CEN 85.1 5 0.00011 34.9 8.0 22 143-164 121-142 (160)
349 PF12761 End3: Actin cytoskele 85.1 8.3 0.00018 35.6 9.6 33 150-185 162-194 (195)
350 PF09738 DUF2051: Double stran 85.0 17 0.00037 35.6 12.3 90 121-227 78-167 (302)
351 PF06637 PV-1: PV-1 protein (P 85.0 37 0.0008 34.6 14.7 42 44-85 274-320 (442)
352 PF07139 DUF1387: Protein of u 84.8 15 0.00032 36.1 11.6 40 123-162 203-242 (302)
353 KOG2751 Beclin-like protein [S 84.7 52 0.0011 34.0 16.2 80 203-282 249-336 (447)
354 smart00806 AIP3 Actin interact 84.7 51 0.0011 33.9 18.3 148 77-227 154-323 (426)
355 PF08581 Tup_N: Tup N-terminal 84.7 18 0.00039 28.7 10.7 41 122-162 6-46 (79)
356 PF15035 Rootletin: Ciliary ro 84.6 31 0.00067 31.3 17.1 143 78-226 2-160 (182)
357 PRK12705 hypothetical protein; 84.5 57 0.0012 34.3 19.4 8 83-90 57-64 (508)
358 KOG3647 Predicted coiled-coil 84.5 11 0.00024 36.7 10.4 56 106-161 125-181 (338)
359 PRK09841 cryptic autophosphory 84.3 20 0.00044 38.6 13.7 24 198-221 361-384 (726)
360 PRK00409 recombination and DNA 84.3 11 0.00024 41.2 11.7 11 253-263 640-650 (782)
361 PF02403 Seryl_tRNA_N: Seryl-t 84.2 20 0.00044 28.9 10.7 32 194-225 68-99 (108)
362 KOG3433 Protein involved in me 84.2 6.4 0.00014 36.2 8.3 62 166-227 82-143 (203)
363 PF12004 DUF3498: Domain of un 84.2 0.32 6.8E-06 50.4 0.0 79 57-148 376-468 (495)
364 PF04799 Fzo_mitofusin: fzo-li 84.1 5.3 0.00011 36.2 7.7 62 76-140 103-164 (171)
365 COG3264 Small-conductance mech 84.1 37 0.00081 37.6 15.4 87 75-161 19-106 (835)
366 COG4913 Uncharacterized protei 84.0 76 0.0016 35.2 18.1 23 202-224 778-800 (1104)
367 PF11180 DUF2968: Protein of u 83.9 32 0.00069 31.8 12.7 16 78-93 96-111 (192)
368 PF10267 Tmemb_cc2: Predicted 83.8 54 0.0012 33.4 15.8 43 172-220 276-318 (395)
369 cd07672 F-BAR_PSTPIP2 The F-BA 83.7 39 0.00085 31.7 17.2 91 132-222 105-208 (240)
370 PF09744 Jnk-SapK_ap_N: JNK_SA 83.5 32 0.00069 30.6 14.4 32 123-154 85-116 (158)
371 cd07596 BAR_SNX The Bin/Amphip 83.5 30 0.00064 30.2 22.5 42 120-162 90-131 (218)
372 KOG0982 Centrosomal protein Nu 83.4 60 0.0013 33.7 18.0 15 188-202 365-379 (502)
373 PRK11820 hypothetical protein; 83.4 46 0.001 32.3 15.0 24 204-227 265-288 (288)
374 PF01920 Prefoldin_2: Prefoldi 83.3 11 0.00024 29.7 8.7 15 147-161 4-18 (106)
375 PRK13454 F0F1 ATP synthase sub 83.3 33 0.00072 30.6 14.2 30 108-137 60-89 (181)
376 TIGR02449 conserved hypothetic 82.9 14 0.0003 28.5 8.5 64 128-208 1-64 (65)
377 cd07651 F-BAR_PombeCdc15_like 82.9 39 0.00084 31.1 18.0 117 74-202 56-180 (236)
378 TIGR00255 conserved hypothetic 82.7 40 0.00086 32.8 13.7 24 204-227 268-291 (291)
379 TIGR03321 alt_F1F0_F0_B altern 82.7 37 0.0008 31.7 13.2 29 108-136 34-62 (246)
380 cd00176 SPEC Spectrin repeats, 82.7 28 0.00061 29.4 16.9 62 167-228 141-207 (213)
381 PF10226 DUF2216: Uncharacteri 82.7 40 0.00088 31.1 13.5 115 50-187 23-137 (195)
382 PF04880 NUDE_C: NUDE protein, 82.6 0.72 1.6E-05 41.4 1.6 30 47-80 18-47 (166)
383 PF05266 DUF724: Protein of un 82.6 34 0.00073 31.3 12.5 24 166-189 160-183 (190)
384 PRK08475 F0F1 ATP synthase sub 82.5 34 0.00074 30.2 13.7 30 108-137 51-80 (167)
385 COG1730 GIM5 Predicted prefold 82.4 24 0.00052 31.1 11.0 35 67-101 9-43 (145)
386 PF08826 DMPK_coil: DMPK coile 82.3 14 0.0003 28.0 8.3 42 176-225 15-57 (61)
387 PF05483 SCP-1: Synaptonemal c 82.3 82 0.0018 34.5 22.6 78 53-133 404-484 (786)
388 PF12072 DUF3552: Domain of un 82.2 39 0.00084 30.7 16.5 46 47-94 24-69 (201)
389 PF07200 Mod_r: Modifier of ru 82.2 23 0.0005 30.2 10.8 88 135-225 28-117 (150)
390 PF06548 Kinesin-related: Kine 82.1 46 0.001 34.6 14.3 100 124-229 274-373 (488)
391 PF06156 DUF972: Protein of un 82.1 14 0.00031 30.8 9.1 53 106-161 4-56 (107)
392 PF02841 GBP_C: Guanylate-bind 82.1 41 0.00088 32.2 13.5 14 171-184 283-296 (297)
393 TIGR02894 DNA_bind_RsfA transc 82.1 38 0.00083 30.5 15.0 67 157-223 89-155 (161)
394 PF05335 DUF745: Protein of un 81.8 42 0.00091 30.7 15.4 36 126-161 87-122 (188)
395 KOG2077 JNK/SAPK-associated pr 81.7 33 0.00072 36.8 13.4 80 54-161 298-377 (832)
396 KOG0288 WD40 repeat protein Ti 81.7 50 0.0011 34.0 14.2 8 110-117 48-55 (459)
397 PRK06569 F0F1 ATP synthase sub 81.5 38 0.00083 30.1 15.2 31 108-138 39-69 (155)
398 PF12777 MT: Microtubule-bindi 81.1 7.2 0.00016 38.2 8.2 119 119-240 213-331 (344)
399 PRK13169 DNA replication intia 81.1 17 0.00037 30.6 9.2 53 106-161 4-56 (110)
400 PF14817 HAUS5: HAUS augmin-li 81.1 86 0.0019 33.9 19.3 49 44-92 298-346 (632)
401 PRK13729 conjugal transfer pil 81.1 28 0.00062 36.2 12.6 21 203-223 100-120 (475)
402 COG3883 Uncharacterized protei 81.0 55 0.0012 31.6 19.5 16 77-92 44-59 (265)
403 PF06005 DUF904: Protein of un 81.0 23 0.00049 27.6 9.3 32 123-154 21-52 (72)
404 PF05529 Bap31: B-cell recepto 80.6 7.8 0.00017 34.6 7.6 10 96-105 97-106 (192)
405 PTZ00121 MAEBL; Provisional 80.5 1.4E+02 0.0029 35.8 20.7 13 54-66 1108-1120(2084)
406 TIGR00998 8a0101 efflux pump m 80.5 53 0.0012 31.1 16.0 23 69-91 78-100 (334)
407 PF10211 Ax_dynein_light: Axon 80.3 45 0.00098 30.2 14.7 59 166-224 128-187 (189)
408 PF06005 DUF904: Protein of un 80.3 24 0.00053 27.4 9.2 13 129-141 6-18 (72)
409 KOG2391 Vacuolar sorting prote 80.3 37 0.0008 34.1 12.6 10 137-146 249-258 (365)
410 TIGR01541 tape_meas_lam_C phag 80.3 64 0.0014 31.9 18.7 13 56-68 12-24 (332)
411 PF05008 V-SNARE: Vesicle tran 80.3 16 0.00034 27.8 8.2 41 123-163 35-76 (79)
412 PF09486 HrpB7: Bacterial type 80.1 44 0.00094 29.9 16.0 59 166-224 87-145 (158)
413 PLN03188 kinesin-12 family pro 80.1 30 0.00066 39.9 13.3 168 56-243 939-1159(1320)
414 COG3096 MukB Uncharacterized p 80.1 1.1E+02 0.0023 34.4 17.6 55 62-120 221-290 (1480)
415 PRK05431 seryl-tRNA synthetase 80.1 11 0.00024 38.2 9.3 30 198-227 71-100 (425)
416 PF08647 BRE1: BRE1 E3 ubiquit 79.9 30 0.00066 27.9 10.1 39 176-214 28-66 (96)
417 PF00901 Orbi_VP5: Orbivirus o 79.8 84 0.0018 33.0 19.5 65 168-232 179-245 (508)
418 PF07794 DUF1633: Protein of u 79.7 43 0.00094 35.4 13.3 118 106-229 593-720 (790)
419 PRK15422 septal ring assembly 79.7 15 0.00033 29.3 7.9 47 186-232 25-71 (79)
420 COG3206 GumC Uncharacterized p 79.6 73 0.0016 32.2 17.6 31 65-95 196-226 (458)
421 KOG0288 WD40 repeat protein Ti 79.4 56 0.0012 33.6 13.8 15 172-186 62-76 (459)
422 PF15254 CCDC14: Coiled-coil d 79.4 1.1E+02 0.0024 34.0 17.7 86 122-210 457-549 (861)
423 cd00584 Prefoldin_alpha Prefol 79.3 35 0.00076 28.3 10.7 21 203-223 104-124 (129)
424 PF11180 DUF2968: Protein of u 79.3 39 0.00085 31.2 11.6 30 129-158 128-157 (192)
425 PF10153 DUF2361: Uncharacteri 79.1 39 0.00084 28.7 11.1 38 52-89 2-39 (114)
426 KOG0240 Kinesin (SMY1 subfamil 79.0 65 0.0014 34.4 14.5 38 64-101 414-451 (607)
427 COG3096 MukB Uncharacterized p 79.0 1.2E+02 0.0025 34.1 18.9 24 70-93 933-956 (1480)
428 PF09766 FimP: Fms-interacting 78.6 20 0.00044 35.5 10.5 107 123-229 15-137 (355)
429 PF07889 DUF1664: Protein of u 78.6 43 0.00093 28.9 11.5 80 120-213 43-123 (126)
430 PF00901 Orbi_VP5: Orbivirus o 78.6 65 0.0014 33.8 14.2 39 179-217 161-200 (508)
431 PF12711 Kinesin-relat_1: Kine 78.4 16 0.00034 29.6 7.9 40 144-187 27-66 (86)
432 cd07674 F-BAR_FCHO1 The F-BAR 78.4 60 0.0013 30.5 16.9 30 61-90 64-93 (261)
433 KOG4360 Uncharacterized coiled 78.4 97 0.0021 32.9 15.9 37 47-83 70-109 (596)
434 KOG1899 LAR transmembrane tyro 78.1 61 0.0013 35.2 14.0 139 56-224 110-248 (861)
435 PRK10476 multidrug resistance 77.9 69 0.0015 30.9 15.3 28 64-91 79-106 (346)
436 KOG1962 B-cell receptor-associ 77.8 52 0.0011 30.9 12.2 58 170-227 149-206 (216)
437 PF07139 DUF1387: Protein of u 77.8 50 0.0011 32.5 12.5 85 136-227 166-256 (302)
438 PF06810 Phage_GP20: Phage min 77.8 33 0.00071 30.2 10.5 10 166-175 59-68 (155)
439 TIGR01541 tape_meas_lam_C phag 77.6 77 0.0017 31.3 26.3 11 203-213 180-190 (332)
440 cd07648 F-BAR_FCHO The F-BAR ( 77.5 62 0.0013 30.2 17.5 29 62-90 65-93 (261)
441 PRK14471 F0F1 ATP synthase sub 77.1 48 0.0011 28.8 15.9 31 108-138 37-67 (164)
442 PF14182 YgaB: YgaB-like prote 77.1 28 0.00061 27.9 8.7 51 128-190 15-65 (79)
443 PF10475 DUF2450: Protein of u 76.9 49 0.0011 31.5 12.2 88 71-159 67-162 (291)
444 PF12795 MscS_porin: Mechanose 76.8 63 0.0014 29.9 19.9 60 61-120 28-95 (240)
445 COG5124 Protein predicted to b 76.7 32 0.00069 31.7 10.1 80 108-195 8-112 (209)
446 PF14735 HAUS4: HAUS augmin-li 76.7 70 0.0015 30.3 21.4 176 47-227 44-229 (238)
447 COG0497 RecN ATPase involved i 76.6 1.1E+02 0.0024 32.6 17.5 32 196-227 331-362 (557)
448 cd07662 BAR_SNX6 The Bin/Amphi 76.6 68 0.0015 30.2 21.7 109 104-214 84-197 (218)
449 PF13863 DUF4200: Domain of un 76.5 41 0.00089 27.6 15.3 48 180-227 61-108 (126)
450 KOG2391 Vacuolar sorting prote 76.3 36 0.00079 34.1 11.2 15 52-66 220-234 (365)
451 PRK09174 F0F1 ATP synthase sub 76.3 63 0.0014 29.7 15.5 29 108-136 82-110 (204)
452 PF05103 DivIVA: DivIVA protei 76.2 0.96 2.1E-05 37.5 0.3 44 48-91 23-66 (131)
453 PF05529 Bap31: B-cell recepto 75.9 29 0.00062 31.0 9.8 33 195-227 156-188 (192)
454 KOG0239 Kinesin (KAR3 subfamil 75.9 1.2E+02 0.0027 32.8 17.3 46 168-213 244-289 (670)
455 PRK07352 F0F1 ATP synthase sub 75.7 56 0.0012 28.7 13.7 29 108-136 48-76 (174)
456 COG1566 EmrA Multidrug resista 75.5 81 0.0018 31.6 13.6 20 73-92 93-112 (352)
457 KOG4593 Mitotic checkpoint pro 75.4 1.3E+02 0.0028 32.9 22.2 6 47-52 66-71 (716)
458 PRK07353 F0F1 ATP synthase sub 75.3 48 0.001 27.8 13.6 84 107-195 33-117 (140)
459 KOG3958 Putative dynamitin [Cy 75.0 93 0.002 31.0 19.2 124 103-226 191-369 (371)
460 TIGR03545 conserved hypothetic 75.0 24 0.00052 37.3 10.3 11 179-189 262-272 (555)
461 TIGR03495 phage_LysB phage lys 74.7 53 0.0011 28.7 10.7 42 116-157 53-94 (135)
462 KOG4572 Predicted DNA-binding 74.7 1E+02 0.0022 34.7 14.8 23 203-225 1012-1034(1424)
463 PF04420 CHD5: CHD5-like prote 74.7 5.3 0.00012 35.2 4.7 55 121-187 41-95 (161)
464 PF09403 FadA: Adhesion protei 74.1 57 0.0012 28.1 11.7 103 69-178 17-126 (126)
465 TIGR00293 prefoldin, archaeal 74.1 21 0.00045 29.5 7.9 29 125-153 4-32 (126)
466 COG4985 ABC-type phosphate tra 74.1 45 0.00098 32.0 10.8 86 75-183 161-246 (289)
467 PF05700 BCAS2: Breast carcino 73.9 32 0.0007 31.7 9.8 83 66-151 138-220 (221)
468 PRK06800 fliH flagellar assemb 73.9 20 0.00042 33.3 8.1 61 132-192 36-100 (228)
469 COG1566 EmrA Multidrug resista 73.9 36 0.00078 34.0 10.7 14 213-226 189-202 (352)
470 PRK15136 multidrug efflux syst 73.8 99 0.0021 30.7 14.9 14 173-186 159-172 (390)
471 KOG4005 Transcription factor X 73.8 14 0.0003 35.4 7.4 53 100-162 94-146 (292)
472 cd07653 F-BAR_CIP4-like The F- 73.5 74 0.0016 29.2 19.1 20 62-81 70-89 (251)
473 TIGR00293 prefoldin, archaeal 73.5 30 0.00065 28.6 8.7 20 203-222 103-122 (126)
474 PF07445 priB_priC: Primosomal 73.3 69 0.0015 28.7 11.5 62 127-190 102-163 (173)
475 PF13805 Pil1: Eisosome compon 73.2 94 0.002 30.2 13.6 116 78-202 96-214 (271)
476 PF08776 VASP_tetra: VASP tetr 73.2 20 0.00043 25.2 6.1 22 153-183 16-37 (40)
477 PRK05431 seryl-tRNA synthetase 73.1 31 0.00067 35.0 10.3 34 119-152 27-60 (425)
478 PF09731 Mitofilin: Mitochondr 73.1 1.2E+02 0.0027 31.5 19.5 31 76-106 249-279 (582)
479 PF07028 DUF1319: Protein of u 73.1 47 0.001 28.8 9.8 36 167-202 62-97 (126)
480 PRK06231 F0F1 ATP synthase sub 73.1 76 0.0016 29.1 13.7 17 179-195 144-160 (205)
481 PF05615 THOC7: Tho complex su 73.0 57 0.0012 27.6 12.2 22 166-187 89-110 (139)
482 PF06248 Zw10: Centromere/kine 72.9 1.3E+02 0.0027 31.7 15.0 16 212-227 155-170 (593)
483 PLN02678 seryl-tRNA synthetase 72.7 28 0.00062 35.8 10.0 28 198-225 76-103 (448)
484 PF08912 Rho_Binding: Rho Bind 72.6 21 0.00045 27.9 6.9 41 133-173 2-42 (69)
485 PLN02320 seryl-tRNA synthetase 72.6 40 0.00086 35.3 11.1 29 197-225 134-162 (502)
486 PLN02678 seryl-tRNA synthetase 72.4 33 0.00071 35.4 10.3 33 120-152 33-65 (448)
487 PF01920 Prefoldin_2: Prefoldi 72.1 46 0.001 26.1 11.4 83 74-157 1-99 (106)
488 smart00338 BRLZ basic region l 72.1 28 0.00061 25.7 7.4 51 116-166 15-65 (65)
489 TIGR00618 sbcc exonuclease Sbc 71.9 1.8E+02 0.0038 32.8 23.3 177 51-228 287-473 (1042)
490 KOG4787 Uncharacterized conser 71.9 1.4E+02 0.003 32.4 14.7 148 77-229 331-488 (852)
491 PF08172 CASP_C: CASP C termin 71.9 17 0.00037 34.5 7.7 117 73-206 1-134 (248)
492 PF13863 DUF4200: Domain of un 71.8 54 0.0012 26.9 14.8 108 72-185 1-108 (126)
493 PF00170 bZIP_1: bZIP transcri 71.8 30 0.00064 25.6 7.4 49 116-164 15-63 (64)
494 KOG0992 Uncharacterized conser 71.8 1.4E+02 0.0031 31.7 19.1 192 50-259 225-431 (613)
495 COG4026 Uncharacterized protei 71.7 52 0.0011 31.5 10.6 98 111-211 113-216 (290)
496 PF08172 CASP_C: CASP C termin 71.6 94 0.002 29.5 13.2 127 129-296 1-169 (248)
497 KOG3156 Uncharacterized membra 71.6 87 0.0019 29.5 11.9 105 122-227 68-194 (220)
498 COG3074 Uncharacterized protei 71.6 36 0.00079 26.8 8.0 66 167-232 6-71 (79)
499 cd07663 BAR_SNX5 The Bin/Amphi 71.4 91 0.002 29.3 21.3 172 48-224 35-208 (218)
500 PF10212 TTKRSYEDQ: Predicted 71.2 80 0.0017 33.3 12.8 98 47-178 417-514 (518)
No 1
>PRK11637 AmiB activator; Provisional
Probab=99.02 E-value=3.5e-07 Score=91.03 Aligned_cols=88 Identities=19% Similarity=0.271 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH----HHHHHHHHH
Q 021465 136 AQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL----QAMEKNLVG 211 (312)
Q Consensus 136 ~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~----qaMEknL~~ 211 (312)
+..|...|++++.++...+++|...+. ++...+++++.+.++++..++.++.+++.+...+.++ +..++.+..
T Consensus 161 l~~i~~~d~~~l~~l~~~~~~L~~~k~---~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~ 237 (428)
T PRK11637 161 FGYLNQARQETIAELKQTREELAAQKA---ELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSE 237 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999988886 7788888888888898888888888888877766666 445556777
Q ss_pred HHHHHHHHHHHHHHH
Q 021465 212 MAREMEKLHAEVVNA 226 (312)
Q Consensus 212 marEvekLrAEIana 226 (312)
+.++.++|.+.|+..
T Consensus 238 l~~~~~~L~~~I~~l 252 (428)
T PRK11637 238 LRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777666643
No 2
>PRK11637 AmiB activator; Provisional
Probab=98.43 E-value=0.00029 Score=70.27 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHH
Q 021465 133 HIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGM 212 (312)
Q Consensus 133 r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~m 212 (312)
+.-++.|...+++|..+.+.+..++...+...+++...+++|+..+++.+...+.++.+++.....+.+++.-++.|..+
T Consensus 169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~ 248 (428)
T PRK11637 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDS 248 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777777666677777788888888877777777777777777776665555444433
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.27 E-value=0.00026 Score=76.85 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIanae 227 (312)
..+.+++..+..++.+++.++..++
T Consensus 472 ~~~~~~l~~l~~~l~~l~~~~~~l~ 496 (1164)
T TIGR02169 472 YDLKEEYDRVEKELSKLQRELAEAE 496 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555544
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.18 E-value=0.00054 Score=74.44 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhh
Q 021465 48 LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNI 97 (312)
Q Consensus 48 lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~ 97 (312)
++.++.....++..+-.....+......+++++..++.++..+...+..+
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l 341 (1164)
T TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555544444444444444444444444444444433333
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.12 E-value=0.0009 Score=72.35 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHhhh
Q 021465 48 LEDKIAVQAAEIERLA 63 (312)
Q Consensus 48 lE~~l~~q~~Ei~~L~ 63 (312)
++.++...+.++..+-
T Consensus 689 l~~~l~~~~~~~~~~~ 704 (1179)
T TIGR02168 689 LEEKIAELEKALAELR 704 (1179)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445444444444443
No 6
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.11 E-value=0.00093 Score=72.26 Aligned_cols=13 Identities=23% Similarity=0.396 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHHH
Q 021465 48 LEDKIAVQAAEIE 60 (312)
Q Consensus 48 lE~~l~~q~~Ei~ 60 (312)
++..+.....+++
T Consensus 703 ~~~~l~~l~~~~~ 715 (1179)
T TIGR02168 703 LRKELEELEEELE 715 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 4444433333333
No 7
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.11 E-value=0.0018 Score=69.14 Aligned_cols=102 Identities=18% Similarity=0.290 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHH
Q 021465 126 KKDLQQAHIEAQSLARARQELTSKIQQASEALHKA----RLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQ 201 (312)
Q Consensus 126 k~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~----kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq 201 (312)
|+...++..|+++|...-+..-+++..+.+++... +...+.++.|...|..|+.+-+++...+-.|.+...++..-
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsa 623 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSA 623 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333334444444444443344444444433211 22234678888888889999999999988899998888876
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 202 L-------QAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 202 ~-------qaMEknL~~marEvekLrAEIanae 227 (312)
+ ...+..+..-.+||..|++.|+..-
T Consensus 624 Lg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 624 LGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 4555666777889999988888644
No 8
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.08 E-value=0.0034 Score=63.30 Aligned_cols=70 Identities=14% Similarity=0.260 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhHh
Q 021465 49 EDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEAD 118 (312)
Q Consensus 49 E~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Eae 118 (312)
+++|..-..||..+-..=..-......|+.+|..+..||..+.+.+.....+. +.+|.++..+..+++..
T Consensus 37 ~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 37 DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444444333333333444444555555555554444333333322 33444444444444433
No 9
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.02 E-value=0.0018 Score=67.10 Aligned_cols=53 Identities=19% Similarity=0.371 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHT 99 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~a 99 (312)
+|+.+|+.-..|...|...|..|-.....|+.++..++.+|.........++.
T Consensus 140 ~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~ 192 (546)
T PF07888_consen 140 LLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQ 192 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777677777888888888777777777777777777666655444443
No 10
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.95 E-value=0.0011 Score=62.34 Aligned_cols=141 Identities=21% Similarity=0.305 Sum_probs=100.2
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh----------hHHHHHHHHHhhhhhHhhhhhHHHHH
Q 021465 58 EIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES----------DSHIRVLLDKIAKMEADCKAGERLKK 127 (312)
Q Consensus 58 Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~----------e~qiR~L~ek~~k~Eaelra~e~lk~ 127 (312)
.|+.|..++-||..-.-..+.+|..++.|+-+++..+.+++.+. +..|+++-+|..+.|-.+.++-..+
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~- 89 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER- 89 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH-
Confidence 35556666666665555556666666666666655555554443 4466777777777776664443334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 128 DLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
++..+..|++.+......|..++..+..++.+.+. ++..++..+..++..+...+.+++.+.+.-.+.....
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~---~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~ 161 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEK---EIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQEL 161 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889998888888999999999999988885 8888888889999999999988887766655544444
No 11
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.93 E-value=0.0024 Score=60.56 Aligned_cols=115 Identities=23% Similarity=0.304 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHH---------------HHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMR---------------EDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDK 111 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~---------------qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek 111 (312)
-|-+||+.--.-.+.|=.+|++|...+..++ .+|..+.+.|..+......+..+.+.-..++.+=
T Consensus 8 ~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~ 87 (312)
T PF00038_consen 8 SLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDL 87 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence 3677888877778888888887776555444 4455555555555555556666666666777777
Q ss_pred hhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 112 IAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR 161 (312)
Q Consensus 112 ~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k 161 (312)
-.|+|.+......+..++..++.++......+-+|-.+++.+..+|.-.+
T Consensus 88 r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 88 RRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 78889899999999999999999999999999999999999999986554
No 12
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.87 E-value=0.0063 Score=60.90 Aligned_cols=165 Identities=18% Similarity=0.262 Sum_probs=94.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHH--
Q 021465 53 AVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQ-- 130 (312)
Q Consensus 53 ~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~-- 130 (312)
+.-..|++.--.|-+-.....-.+++++..+|+||.++.....+++++ +..|.+...++|+++.++.+-.++|+
T Consensus 105 ~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr----l~~l~~qr~ql~aq~qsl~a~~k~LQ~s 180 (499)
T COG4372 105 EAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR----LKTLAEQRRQLEAQAQSLQASQKQLQAS 180 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777777777788888899999999999999999988888775 46788888888888887766666665
Q ss_pred --HHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHh
Q 021465 131 --QAHIEAQSLAR-------ARQELTS---KIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDN 198 (312)
Q Consensus 131 --q~r~e~q~L~~-------~rqeL~a---evq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~el 198 (312)
|++.+.+.|.. .+++|.. .++...+||++..+-.|++. ++|...-..+...--.|-.--..-.+.
T Consensus 181 ~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~---q~i~qrd~~i~q~~q~iaar~e~I~~r 257 (499)
T COG4372 181 ATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTA---QAIQQRDAQISQKAQQIAARAEQIRER 257 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44444443332 2233322 24455555555554322221 222221111111111111111111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 199 VEQLQAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 199 leq~qaMEknL~~marEvekLrAEIa 224 (312)
-+++|.+|..++-+.+|++.|++=..
T Consensus 258 e~~lq~lEt~q~~leqeva~le~yyQ 283 (499)
T COG4372 258 ERQLQRLETAQARLEQEVAQLEAYYQ 283 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446666677777777776665444
No 13
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.86 E-value=0.0067 Score=55.41 Aligned_cols=163 Identities=20% Similarity=0.290 Sum_probs=91.3
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHH
Q 021465 59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQS 138 (312)
Q Consensus 59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~ 138 (312)
|..|-.-|++|+....+|++.+..+.+.-.+|...|.+++. ++|.+-.-..+--+-=..++.||..+..+..+-++
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~----q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~ 85 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRK----QLKSLQQALQKAKALEEELEDLKTLAKSLEEENRS 85 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777777777777777777777777776665553 33433211111111112234444444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH-------HHHHHH-HHHH------hhcHHhHHHHHH
Q 021465 139 LARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHR-------RLRATF-EYEK------GLNIDNVEQLQA 204 (312)
Q Consensus 139 L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq-------~~Raai-E~EK------k~~~elleq~qa 204 (312)
|.++...+-.+.|.|..+++..+.++ ..+.++.+.++..+. .++.-+ +||. ..-.+...++..
T Consensus 86 L~aq~rqlEkE~q~L~~~i~~Lqeen---~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e 162 (193)
T PF14662_consen 86 LLAQARQLEKEQQSLVAEIETLQEEN---GKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE 162 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 55555555555555555666555533 333444444443222 223222 3322 112334445588
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 205 MEKNLVGMAREMEKLHAEVVNAEM 228 (312)
Q Consensus 205 MEknL~~marEvekLrAEIanaek 228 (312)
+.+-+.+...-.+.||.||...+.
T Consensus 163 L~~~ieEy~~~teeLR~e~s~LEe 186 (193)
T PF14662_consen 163 LKKTIEEYRSITEELRLEKSRLEE 186 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999998874
No 14
>PRK03918 chromosome segregation protein; Provisional
Probab=97.74 E-value=0.008 Score=64.44 Aligned_cols=75 Identities=25% Similarity=0.444 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 021465 104 HIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLR 178 (312)
Q Consensus 104 qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~Lr 178 (312)
++..+.+...+++.++...+..+.++..++.+++.+...-+.+..++..+..++...+.++.++..+...++.+.
T Consensus 215 e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~ 289 (880)
T PRK03918 215 ELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK 289 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555555555555555555555555554444444444444333333
No 15
>PRK09039 hypothetical protein; Validated
Probab=97.67 E-value=0.005 Score=60.44 Aligned_cols=58 Identities=14% Similarity=0.292 Sum_probs=35.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGM----AREMEKLHAEV 223 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~m----arEvekLrAEI 223 (312)
++..|+++|++||..+..+.++|+.-++...+.-.+++.+++.|... ..++++++.++
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 55666666777776677666666665555555556665555555554 34566666666
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.63 E-value=0.015 Score=65.16 Aligned_cols=88 Identities=25% Similarity=0.379 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHH
Q 021465 135 EAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAR 214 (312)
Q Consensus 135 e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~mar 214 (312)
++..+.....++..++..++.++..... .+..++.+++.++.++..+...+..-+....+.-.++...+.++..+..
T Consensus 829 ei~~l~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~ 905 (1163)
T COG1196 829 EIEELEEEIEELEEKLDELEEELEELEK---ELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444433332 3444445555555555555555555555555555555666666666666
Q ss_pred HHHHHHHHHHH
Q 021465 215 EMEKLHAEVVN 225 (312)
Q Consensus 215 EvekLrAEIan 225 (312)
++++++..+..
T Consensus 906 ~~~~~~~~~~~ 916 (1163)
T COG1196 906 EIEKLRERLEE 916 (1163)
T ss_pred HHHHHHHHHHH
Confidence 66666655554
No 17
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.63 E-value=0.0024 Score=62.02 Aligned_cols=110 Identities=22% Similarity=0.267 Sum_probs=94.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHhhcHHh
Q 021465 120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLP-DLHAELDSLRQEHRRLRATFEYEKGLNIDN 198 (312)
Q Consensus 120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~-alraELe~LrqElq~~RaaiE~EKk~~~el 198 (312)
+..+.|+.+...+....+.+......|....+.++.++..+++-..++. ..+.+|+.+|+++......|+..++...++
T Consensus 156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el 235 (325)
T PF08317_consen 156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAEL 235 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888999999999999988887655554 556889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465 199 VEQLQAMEKNLVGMAREMEKLHAEVVNAEMR 229 (312)
Q Consensus 199 leq~qaMEknL~~marEvekLrAEIanaekr 229 (312)
-.+++..+..+.++..+..++.++|+++++.
T Consensus 236 ~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 236 QEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988843
No 18
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.59 E-value=0.017 Score=60.05 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021465 203 QAMEKNLVGMAREMEKLHAEVVNAEMRG 230 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIanaekra 230 (312)
+++.........+|++|..++..+++.-
T Consensus 360 ~~l~~~~e~~k~~ie~L~~el~~~e~~l 387 (546)
T PF07888_consen 360 QALQHSAEADKDEIEKLSRELQMLEEHL 387 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444445555568999999999888754
No 19
>PRK02224 chromosome segregation protein; Provisional
Probab=97.58 E-value=0.028 Score=60.52 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 021465 71 ASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLAR 141 (312)
Q Consensus 71 ~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~ 141 (312)
.....+++++..++.++..+...+..++. ++..+.++...++..+..++.+..++..+..+++++..
T Consensus 206 ~~l~~~~~~l~el~~~i~~~~~~~~~l~~----~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~ 272 (880)
T PRK02224 206 ERLNGLESELAELDEEIERYEEQREQARE----TRDEADEVLEEHEERREELETLEAEIEDLRETIAETER 272 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333333322 23333333344444444444444444444444444333
No 20
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.56 E-value=0.0039 Score=60.65 Aligned_cols=101 Identities=20% Similarity=0.235 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
+.|+.|+.+++.-...+..-|++ ++..++.+|..... ++...+.+++.+++++..++..|+.-++...+..+++
T Consensus 182 ~~L~~e~~~L~~~~~e~~~~d~~---eL~~lk~~l~~~~~---ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 182 DALEEELRQLKQLEDELEDCDPT---ELDRAKEKLKKLLQ---EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHhHHHHHhCCHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555444444444444 44455566666654 7888889999999999999999999888888899998
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHh
Q 021465 203 QAMEKNLVGMA----REMEKLHAEVVNAEMR 229 (312)
Q Consensus 203 qaMEknL~~ma----rEvekLrAEIanaekr 229 (312)
+..++.+..-. .|+.+|++.+...++.
T Consensus 256 ~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 256 AEAEKKLEQCRGFTFKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 88888665543 4999999999988854
No 21
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.56 E-value=0.017 Score=59.69 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021465 122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKN 166 (312)
Q Consensus 122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qq 166 (312)
+..++.||.+++.++++....-..|...+..|+.||.+.+.++..
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~ 327 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELER 327 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888877777777777777777777777765544
No 22
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.54 E-value=0.0043 Score=60.24 Aligned_cols=35 Identities=11% Similarity=0.265 Sum_probs=18.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465 67 HRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES 101 (312)
Q Consensus 67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~ 101 (312)
..|...+..|++|...+...+..+......++..+
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~ 186 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERK 186 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555444444
No 23
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.51 E-value=0.0042 Score=58.91 Aligned_cols=74 Identities=20% Similarity=0.308 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV 199 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ell 199 (312)
+.++.++..++.........++.|-.++..++++|..... ....+...++.|+.|+.-++...+.|.+.-..++
T Consensus 78 ~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~---~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~ 151 (312)
T PF00038_consen 78 DNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETL---ARVDLENQIQSLKEELEFLKQNHEEEIEELREQI 151 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---hHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 4455555555555555555555555555555555554443 3344445555555555555555555444444433
No 24
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.50 E-value=0.077 Score=53.73 Aligned_cols=54 Identities=17% Similarity=0.354 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhch
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTE 100 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae 100 (312)
-++.+|..+..+.+.|..+=..|..++-.++.+|..++.++..++..|.++...
T Consensus 49 ~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 49 ALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 566666666666666666666666666666666666666666666666555443
No 25
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.49 E-value=0.024 Score=58.96 Aligned_cols=79 Identities=23% Similarity=0.255 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHH
Q 021465 132 AHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVG 211 (312)
Q Consensus 132 ~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~ 211 (312)
++.++......-.+|-+++..++..+..... ++.-|++|...|+.+|.++|..++.|.-.+.+..-+.|.+...|.-
T Consensus 139 ~re~~~~~~~~l~~leAe~~~~krr~~~le~---e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f 215 (546)
T KOG0977|consen 139 AREKLDDYLSRLSELEAEINTLKRRIKALED---ELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAF 215 (546)
T ss_pred hHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444444445556666666666666665 5566778888888888888888888887777777777777776666
Q ss_pred HH
Q 021465 212 MA 213 (312)
Q Consensus 212 ma 213 (312)
|.
T Consensus 216 ~~ 217 (546)
T KOG0977|consen 216 LK 217 (546)
T ss_pred HH
Confidence 65
No 26
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.42 E-value=0.061 Score=54.77 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=12.2
Q ss_pred cHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 195 NIDNVEQLQAMEKNLVGMAREMEKLHAE 222 (312)
Q Consensus 195 ~~elleq~qaMEknL~~marEvekLrAE 222 (312)
..+..+.++..+.+|..+..+...+..+
T Consensus 374 ~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 374 FVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444443
No 27
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.42 E-value=0.012 Score=61.10 Aligned_cols=122 Identities=20% Similarity=0.335 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Q 021465 102 DSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEH 181 (312)
Q Consensus 102 e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqEl 181 (312)
+.+-|+|++++...|++-...+.+|..-.-++.|++++.+.-..+...-+.+.+.|++.+. +++..-.|++.++++.
T Consensus 241 ~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~---Eie~kEeE~e~lq~~~ 317 (581)
T KOG0995|consen 241 KKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKS---EIEEKEEEIEKLQKEN 317 (581)
T ss_pred HHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3456889999988888878888888777789999999999999999999999999999887 7778888899999999
Q ss_pred HHHHHHHHHHHhhcHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 182 RRLRATFEYEKGLNIDNVEQL----QAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 182 q~~RaaiE~EKk~~~elleq~----qaMEknL~~marEvekLrAEIanae 227 (312)
..++..|+.. +-..+.+++| ...++++..+..++++|+.++=+.+
T Consensus 318 d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~ 366 (581)
T KOG0995|consen 318 DELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELK 366 (581)
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999888764 4444455544 5555555555555555555554433
No 28
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.41 E-value=0.025 Score=66.12 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHH
Q 021465 49 EDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKD 128 (312)
Q Consensus 49 E~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~E 128 (312)
.+++..-...+...-.-|-.|--+...|++++..+.-|+++.++.+..+....-.-=.-|.+.-.+.|.....++...++
T Consensus 1385 ~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e 1464 (1930)
T KOG0161|consen 1385 QQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRE 1464 (1930)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555566666777777888888888888888776555444333222222333334444444556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 129 LQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 129 L~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
+.+...+++++...=.++..++..++++-...+.++.++..-..+...-.+|++..+..++.++......++++
T Consensus 1465 ~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeEl 1538 (1930)
T KOG0161|consen 1465 LRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEEL 1538 (1930)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888777777777777777777777776666666667777777777777777777665555555544
No 29
>PRK02224 chromosome segregation protein; Provisional
Probab=97.39 E-value=0.02 Score=61.64 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 021465 168 PDLHAELDSLRQEHRRLRATFE 189 (312)
Q Consensus 168 ~alraELe~LrqElq~~RaaiE 189 (312)
..++.++..++.++..+++.++
T Consensus 380 ~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 380 EDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555544443
No 30
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.33 E-value=0.046 Score=64.05 Aligned_cols=30 Identities=23% Similarity=0.191 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHhHHHHHH
Q 021465 175 DSLRQEHRRLRATFEYEKGLNIDNVEQLQA 204 (312)
Q Consensus 175 e~LrqElq~~RaaiE~EKk~~~elleq~qa 204 (312)
..|..+++.-|++.....+.+.++-+++.+
T Consensus 1107 ~el~e~le~er~~r~K~ek~r~dL~~ele~ 1136 (1930)
T KOG0161|consen 1107 KELEEELEAERASRAKAERQRRDLSEELEE 1136 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444433333333344333333
No 31
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=97.33 E-value=0.032 Score=51.47 Aligned_cols=101 Identities=26% Similarity=0.347 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HH--hcccchhHHHHHHHHHHHHHH
Q 021465 124 RLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKA------------------RL--EVKNLPDLHAELDSLRQEHRR 183 (312)
Q Consensus 124 ~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~------------------ka--d~qql~alraELe~LrqElq~ 183 (312)
....||...+.++.-|...-..|..++..|+.++... +. .-..+..++.+++.|+.||..
T Consensus 70 ~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~ 149 (202)
T PF06818_consen 70 VCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQR 149 (202)
T ss_pred HhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHH
Confidence 3444555555555444444444444555555555443 10 112355666677777766664
Q ss_pred -------HHHHHHHHHhhcHHhHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 021465 184 -------LRATFEYEKGLNIDNVEQL----QAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 184 -------~RaaiE~EKk~~~elleq~----qaMEknL~~marEvekLrAEIa 224 (312)
.+..|+.|+..-.+-=+.+ +.+..|++.|=+.-..|..++.
T Consensus 150 er~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 150 ERQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4446788888777766666 7888899999999888887763
No 32
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.32 E-value=0.06 Score=52.23 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=26.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhc-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFEYEKGLN-IDNVEQLQAMEKNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE~EKk~~-~elleq~qaMEknL~~marEvekLrAEIan 225 (312)
++...+++++.++.++..++..+...+... .+..+++...+.++.....+++.++..+.+
T Consensus 211 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 211 ELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444555555555555555443332222 222223344444444444455554444443
No 33
>PRK09039 hypothetical protein; Validated
Probab=97.30 E-value=0.024 Score=55.67 Aligned_cols=132 Identities=18% Similarity=0.260 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLK 126 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk 126 (312)
+|.+.|..+..|+.+|-..=-.|+....--+.....++++|..|+..+..++++++. +...++.. ......+.
T Consensus 43 fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~-Le~~~~~~------~~~~~~~~ 115 (343)
T PRK09039 43 FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSR-LQALLAEL------AGAGAAAE 115 (343)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh------hhhcchHH
Confidence 667777777777777643333366666666666777777777777766655555531 11111100 00111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Q 021465 127 KDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATF 188 (312)
Q Consensus 127 ~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raai 188 (312)
..+.++..++....+.-.+...+|+.|+++|+.++. |+..+.++|+..++.....+..|
T Consensus 116 ~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~---Qla~le~~L~~ae~~~~~~~~~i 174 (343)
T PRK09039 116 GRAGELAQELDSEKQVSARALAQVELLNQQIAALRR---QLAALEAALDASEKRDRESQAKI 174 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334443333334444445555555555554 45555555555554444444443
No 34
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.27 E-value=0.03 Score=60.61 Aligned_cols=148 Identities=17% Similarity=0.210 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHH-----HHhhhhhHhhhhhHHHHHHHHHHH-------HHHHHH
Q 021465 72 SHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLL-----DKIAKMEADCKAGERLKKDLQQAH-------IEAQSL 139 (312)
Q Consensus 72 th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~-----ek~~k~Eaelra~e~lk~EL~q~r-------~e~q~L 139 (312)
.+-.|+..|..++.||.+|+..+....++++--+.+|. -+.+|.. ++.++.+|..-. .+++-+
T Consensus 239 ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k-----~d~~~~eL~rk~~E~~~~qt~l~~~ 313 (775)
T PF10174_consen 239 KIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSK-----MDRLKLELSRKKSELEALQTRLETL 313 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777899999998877766666644433333 3444421 344444444444 445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-------HHHHHHHHHH
Q 021465 140 ARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL-------QAMEKNLVGM 212 (312)
Q Consensus 140 ~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~-------qaMEknL~~m 212 (312)
..+..++-.-+..++.+|.+.+. .-.-|.++++.|+.++.+.-+.++...+...+.-+.. ..|.-.++.-
T Consensus 314 ~~~~~d~r~hi~~lkesl~~ke~---~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~ 390 (775)
T PF10174_consen 314 EEQDSDMRQHIEVLKESLRAKEQ---EAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKK 390 (775)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555553 4566777777777777777666665444444443333 2344444444
Q ss_pred HHHHHHHHHHHHHHH
Q 021465 213 AREMEKLHAEVVNAE 227 (312)
Q Consensus 213 arEvekLrAEIanae 227 (312)
.++|..|.+.|.|.+
T Consensus 391 e~ki~~Lq~kie~Le 405 (775)
T PF10174_consen 391 ERKINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666655544
No 35
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=97.25 E-value=0.044 Score=58.36 Aligned_cols=145 Identities=19% Similarity=0.240 Sum_probs=90.6
Q ss_pred HHHHHHHHH-HHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 76 MREDLAAAQ-QEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQAS 154 (312)
Q Consensus 76 L~qeL~aaq-~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~ 154 (312)
=.-+|.+-| +||++|......++-..-.|-.-|....+-||+.-++-.+-++|.+.+++-+-+-...|+.|-.-.|.--
T Consensus 63 qqaelis~qlqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~EL 142 (739)
T PF07111_consen 63 QQAELISRQLQELRRLEEEVRALRETSLQQKMRLEAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQREL 142 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHH
Confidence 344777777 9999999988888777666666777777777777777777788888888777777778888866665555
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465 155 EALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL----QAMEKNLVGMAREMEKLHAEVVNAEMR 229 (312)
Q Consensus 155 ~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~----qaMEknL~~marEvekLrAEIanaekr 229 (312)
+++.+... .+|..|.+.++..=+.+...-....+.+..+ -.-.++|....+|.+-|+.++..+...
T Consensus 143 ee~q~~Hq---------eql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~ 212 (739)
T PF07111_consen 143 EEAQRLHQ---------EQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEE 212 (739)
T ss_pred HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55555554 5666666555544333222111111111222 122355555556666666666655543
No 36
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.24 E-value=0.031 Score=63.42 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH---HHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 145 ELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATF---EYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHA 221 (312)
Q Consensus 145 eL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raai---E~EKk~~~elleq~qaMEknL~~marEvekLrA 221 (312)
+|-.++..+..+|...+. .++.+..+.+.++.++.+++..+ .-++-...+.+.+.+..+..|.++..++++++.
T Consensus 826 ele~ei~~~~~el~~l~~---~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~ 902 (1311)
T TIGR00606 826 QVNQEKQEKQHELDTVVS---KIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIR 902 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555443 45556666666666666664443 333333444555557777888888888888877
Q ss_pred HHHHHHH
Q 021465 222 EVVNAEM 228 (312)
Q Consensus 222 EIanaek 228 (312)
+|...+.
T Consensus 903 ~~~~~~~ 909 (1311)
T TIGR00606 903 EIKDAKE 909 (1311)
T ss_pred HHHHHHH
Confidence 7776653
No 37
>PRK03918 chromosome segregation protein; Provisional
Probab=97.20 E-value=0.082 Score=56.80 Aligned_cols=42 Identities=21% Similarity=0.426 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHH
Q 021465 49 EDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRI 90 (312)
Q Consensus 49 E~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L 90 (312)
++++..-..++..|..+=..+......+++.+..++.+++.|
T Consensus 192 ~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l 233 (880)
T PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL 233 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444433
No 38
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.20 E-value=0.24 Score=48.39 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=34.5
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhH
Q 021465 61 RLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDS 103 (312)
Q Consensus 61 ~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~ 103 (312)
.|-.+|..|......++..-..++.|++.|+.....+.+.-|+
T Consensus 31 sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEq 73 (310)
T PF09755_consen 31 SLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQ 73 (310)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455788899999999999999999999999887776655533
No 39
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.15 E-value=0.11 Score=53.69 Aligned_cols=75 Identities=24% Similarity=0.275 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 149 KIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNA 226 (312)
Q Consensus 149 evq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIana 226 (312)
.+..++.||...+. .|...+.|+..|+..+..+|..++.+|.....+-+..........++..++.+++.+|..+
T Consensus 282 ~l~s~~~ELe~ak~---~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 282 SLASAKKELEEAKK---ELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
Confidence 36666666666665 4455555555555555555555555555555555555555555555555555555555443
No 40
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.12 E-value=0.071 Score=51.73 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=36.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465 167 LPDLHAELDSLRQEHRRLRATFEYEKGLNI-DNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMR 229 (312)
Q Consensus 167 l~alraELe~LrqElq~~RaaiE~EKk~~~-elleq~qaMEknL~~marEvekLrAEIanaekr 229 (312)
+..++.++..++.++..+++.++.-+.... .........+..+.....++.++++++..++.+
T Consensus 205 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 205 RAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555443222222 222223556667778888888888888887754
No 41
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.12 E-value=0.072 Score=50.29 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=16.5
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 115 MEADCKAGERLKKDLQQAHIEAQSLARARQEL 146 (312)
Q Consensus 115 ~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL 146 (312)
+++--.+.+.++.++-+...+++++......+
T Consensus 47 ~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 47 LEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344456666666666666655444433
No 42
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.11 E-value=0.11 Score=56.67 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHH
Q 021465 138 SLARARQELTSKIQQASEALH----KARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMA 213 (312)
Q Consensus 138 ~L~~~rqeL~aevq~l~~EL~----r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~ma 213 (312)
.+.....+|-.++..+.++.. +.+...+.++.+++|+..+.-|++.++..+..-...++.++.++....++-|...
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~ 542 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLA 542 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333344444444444444443 3344556678888888888888888888777766677777777766555555544
Q ss_pred H
Q 021465 214 R 214 (312)
Q Consensus 214 r 214 (312)
.
T Consensus 543 ~ 543 (980)
T KOG0980|consen 543 A 543 (980)
T ss_pred H
Confidence 4
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.09 E-value=0.16 Score=51.75 Aligned_cols=92 Identities=11% Similarity=0.137 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcH---HhHHHH----HHHHHHH
Q 021465 137 QSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNI---DNVEQL----QAMEKNL 209 (312)
Q Consensus 137 q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~---elleq~----qaMEknL 209 (312)
..|.....+|-.++..+...+...+....++..+...+..+++++...+.+++.-+.... ..++++ ...+..|
T Consensus 302 ~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l 381 (562)
T PHA02562 302 TKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEEL 381 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHH
Confidence 333344444444444444444433333333444444444444444444444433222111 111111 2233445
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021465 210 VGMAREMEKLHAEVVNAEM 228 (312)
Q Consensus 210 ~~marEvekLrAEIanaek 228 (312)
.....+++++..++...++
T Consensus 382 ~~l~~~l~~~~~~~~~~~k 400 (562)
T PHA02562 382 AKLQDELDKIVKTKSELVK 400 (562)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555543
No 44
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.09 E-value=0.11 Score=60.04 Aligned_cols=160 Identities=17% Similarity=0.194 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHH--HHHhhh-----------hhHhh----hhhHHHHHHHHHH
Q 021465 70 AASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVL--LDKIAK-----------MEADC----KAGERLKKDLQQA 132 (312)
Q Consensus 70 a~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L--~ek~~k-----------~Eael----ra~e~lk~EL~q~ 132 (312)
..+|..|+++...+++.++.+...+.++.-=. +.|.. |+...+ ++..+ +..+.++.++.+.
T Consensus 934 p~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qa 1011 (1486)
T PRK04863 934 PEQFEQLKQDYQQAQQTQRDAKQQAFALTEVV--QRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQA 1011 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888877655443222 11111 111111 11111 1123344445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHH
Q 021465 133 HIEAQSLARARQELTSKIQQASEALHKARLEVKNL---------PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQ 203 (312)
Q Consensus 133 r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql---------~alraELe~LrqElq~~RaaiE~EKk~~~elleq~q 203 (312)
+.+.++....-..+...++.+.+.+...+.++++| ..++..-+.|.+.|...|+...+--+.....-.+++
T Consensus 1012 q~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe 1091 (1486)
T PRK04863 1012 QAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMD 1091 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555566666666666666666555 223334477888888888887777777777778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465 204 AMEKNLVGMAREMEKLHAEVVNAEMRGH 231 (312)
Q Consensus 204 aMEknL~~marEvekLrAEIanaekra~ 231 (312)
.++++|....++...++.+|.++..++-
T Consensus 1092 ~L~kkL~~~~~e~~~~re~I~~aK~~W~ 1119 (1486)
T PRK04863 1092 NLTKKLRKLERDYHEMREQVVNAKAGWC 1119 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876543
No 45
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.08 E-value=0.043 Score=58.81 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021465 170 LHAELDSLRQEHRRLRAT 187 (312)
Q Consensus 170 lraELe~LrqElq~~Raa 187 (312)
+|.....|..|+.++|..
T Consensus 543 ~r~r~~~lE~E~~~lr~e 560 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRE 560 (697)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444555555554
No 46
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.08 E-value=0.097 Score=51.06 Aligned_cols=38 Identities=21% Similarity=0.434 Sum_probs=33.2
Q ss_pred HH-HhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhh
Q 021465 58 EI-ERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIR 95 (312)
Q Consensus 58 Ei-~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~ 95 (312)
.| +.|+..|+-|......|+++|.++.+.|..|++.+.
T Consensus 83 ~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~ 121 (306)
T PF04849_consen 83 RIGQSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELS 121 (306)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35 899999999999999999999999999998887543
No 47
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.089 Score=58.04 Aligned_cols=44 Identities=18% Similarity=0.305 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhh---hHHHHHHHHHHHHHHhHHH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAA---SHITMREDLAAAQQEIPRI 90 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~---th~~L~qeL~aaq~Elq~L 90 (312)
-++.+|.++..|+..|-.+=+-|-+ -.-.|+++|.-.++||--+
T Consensus 681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~ 727 (1174)
T KOG0933|consen 681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALL 727 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444332222222 2234667777776666444
No 48
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=97.05 E-value=0.12 Score=43.98 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=16.3
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465 59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKA 92 (312)
Q Consensus 59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~ 92 (312)
+..|-.+.+++-.........+..++.||.....
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~ 38 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLESQAK 38 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555555444
No 49
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=97.01 E-value=0.014 Score=49.61 Aligned_cols=58 Identities=28% Similarity=0.346 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 021465 125 LKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHR 182 (312)
Q Consensus 125 lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq 182 (312)
+..|+..++.++.+|...|..+..++-.++.+.+..++..++++.++.+++.|++.++
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888899999999999999888888887766666666666666664443
No 50
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.01 E-value=0.12 Score=57.26 Aligned_cols=155 Identities=15% Similarity=0.244 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhh---chhhHHHHHHHHHhhhhhHh----hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 73 HITMREDLAAAQQEIPRIKAHIRNIH---TESDSHIRVLLDKIAKMEAD----CKAGERLKKDLQQAHIEAQSLARARQE 145 (312)
Q Consensus 73 h~~L~qeL~aaq~Elq~L~~~~~~~~---ae~e~qiR~L~ek~~k~Eae----lra~e~lk~EL~q~r~e~q~L~~~rqe 145 (312)
....++.+..+++.+......+..++ +|.|.++-++.+-.--+..+ ...++.+|.+..+++.++..-.+.-+.
T Consensus 290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~ 369 (1074)
T KOG0250|consen 290 IKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRK 369 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666 55666665555544333333 344555566666666665555555556
Q ss_pred HHHHHHHHHHHHHHHHHhc-c----cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021465 146 LTSKIQQASEALHKARLEV-K----NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLH 220 (312)
Q Consensus 146 L~aevq~l~~EL~r~kad~-q----ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLr 220 (312)
+-..+..+.+.|...+.+. + +++....+++.|++|++.++..+..-+....+..+....++.++.....++-.|+
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~ 449 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLR 449 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 6666666666665555433 2 2233334445555555555554444455555555555555555555555555555
Q ss_pred HHHHHHH
Q 021465 221 AEVVNAE 227 (312)
Q Consensus 221 AEIanae 227 (312)
..|.+..
T Consensus 450 k~i~~~~ 456 (1074)
T KOG0250|consen 450 KKIENIS 456 (1074)
T ss_pred HHHHHHH
Confidence 5555433
No 51
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.00 E-value=0.071 Score=55.59 Aligned_cols=101 Identities=18% Similarity=0.281 Sum_probs=61.7
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhh----hhhHHHHHHHHHH
Q 021465 57 AEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADC----KAGERLKKDLQQA 132 (312)
Q Consensus 57 ~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eael----ra~e~lk~EL~q~ 132 (312)
.||.+|-.|+--|........+++..+..++......+..+++|- --+--++.+||.++ +.+..|..+|..+
T Consensus 113 ~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~----~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 113 IEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEI----NTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344444444444444444444444455555554444444444443 34555566666554 4566777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 133 HIEAQSLARARQELTSKIQQASEALHKAR 161 (312)
Q Consensus 133 r~e~q~L~~~rqeL~aevq~l~~EL~r~k 161 (312)
|..+..=...|.++..++|.|.++|+-.+
T Consensus 189 r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 189 RKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77777777888888999999999986655
No 52
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.97 E-value=0.11 Score=49.73 Aligned_cols=120 Identities=15% Similarity=0.250 Sum_probs=86.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021465 65 DNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQ 144 (312)
Q Consensus 65 dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rq 144 (312)
+.+.-..-|..++|....+++||.....--+.+.+|-|.|+-.+..+..+++++. +.|+-|++-.+ .++..++-
T Consensus 14 E~~ywk~l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~n---qrl~~E~e~~K---ek~e~q~~ 87 (333)
T KOG1853|consen 14 EDQYWKLLHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRN---QRLTTEQERNK---EKQEDQRV 87 (333)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHH
Confidence 3445555688899999999999999999999999999999999999999999764 45665555433 22333344
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021465 145 ELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEY 190 (312)
Q Consensus 145 eL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~ 190 (312)
+.-.++-.|..||...++-..++-.-..||++....|++++.+..|
T Consensus 88 q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~ 133 (333)
T KOG1853|consen 88 QFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIY 133 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhh
Confidence 4444566777777777764445555556777777777777766444
No 53
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.94 E-value=0.23 Score=45.44 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASH 73 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th 73 (312)
-|...|...+.+++.|..||+-|..-.
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk~lq 42 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLKQLQ 42 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888999999999998776543
No 54
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.92 E-value=0.15 Score=51.36 Aligned_cols=63 Identities=10% Similarity=0.192 Sum_probs=33.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHh--------hcHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFEYEKG--------LNIDNVEQL-----QAMEKNLVGMAREMEKLHAEVVNAEM 228 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE~EKk--------~~~elleq~-----qaMEknL~~marEvekLrAEIanaek 228 (312)
.+..++.+++.++.++..++..+..-+. .....+.++ .....+++....++..+++++..++.
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666665443110 011122222 35566666666677777777766553
No 55
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.87 E-value=0.4 Score=52.16 Aligned_cols=180 Identities=18% Similarity=0.253 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhH----
Q 021465 48 LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGE---- 123 (312)
Q Consensus 48 lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e---- 123 (312)
++-.|.--..||..|-+...-+..++...++.|..++.+|.+...+...+++|.|.-.-.|.+|..-++.--..++
T Consensus 292 ~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qe 371 (775)
T PF10174_consen 292 LKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQE 371 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667888888888888888888888888888888888888888888776655555555444433222222
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465 124 ----------RLKKDLQQAHIEAQSLARARQELT----SKIQQASEALHKA--RLEVKNLPDLHAELDSLRQEHRRLRAT 187 (312)
Q Consensus 124 ----------~lk~EL~q~r~e~q~L~~~rqeL~----aevq~l~~EL~r~--kad~qql~alraELe~LrqElq~~Raa 187 (312)
.|+..+.....++..|..--..|. .+-..+..+..+. ++|......+...|+....|.++.+..
T Consensus 372 E~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~ 451 (775)
T PF10174_consen 372 EKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQER 451 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 233333333333333333211111 2222222222222 345555566667777777777777777
Q ss_pred HHHHHhhc-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 188 FEYEKGLN-IDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 188 iE~EKk~~-~elleq~qaMEknL~~marEvekLrAEIanae 227 (312)
++..+... .+..+++..+.+.+.....+++.|..++...+
T Consensus 452 l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~ 492 (775)
T PF10174_consen 452 LEEQRERAEKERQEELETYQKELKELKAKLESLQKELSEKE 492 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 66443222 34556667777777777777777777766544
No 56
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.87 E-value=0.34 Score=53.72 Aligned_cols=102 Identities=24% Similarity=0.277 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHh--hcHHhHH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKG--LNIDNVE 200 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk--~~~elle 200 (312)
+.++.-|..-..|+-+|.+...+|..+++....-+..... +++.|.+.+-.+..|-.++-..|-.-+- .+..+++
T Consensus 491 knlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~---k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LE 567 (1195)
T KOG4643|consen 491 KNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSN---KLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLE 567 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5555555555566666777777777777776666665553 5666666666666555555555554444 4444555
Q ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 201 QL-----------QAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 201 q~-----------qaMEknL~~marEvekLrAEIanae 227 (312)
|. +.|=..|.++.++-++|+.+|.|.+
T Consensus 568 q~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQq 605 (1195)
T KOG4643|consen 568 QNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQ 605 (1195)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44 6666777888889999999987765
No 57
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.86 E-value=0.4 Score=46.58 Aligned_cols=131 Identities=18% Similarity=0.287 Sum_probs=75.2
Q ss_pred HHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 79 DLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGER---LKKDLQQAHIEAQSLARARQELTSKIQQASE 155 (312)
Q Consensus 79 eL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~---lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~ 155 (312)
++-+.+.+|++|--......... ..=+.|+.++..++.++...+. ...++..+.+++..|.....++..+++.+.+
T Consensus 108 ~~~~ler~i~~Le~~~~T~~L~~-e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~ 186 (294)
T COG1340 108 SIKSLEREIERLEKKQQTSVLTP-EEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELAN 186 (294)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666544322211111 1235677777777777755553 3455566667777777777777777777777
Q ss_pred HHHHHHHhc----ccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHH
Q 021465 156 ALHKARLEV----KNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLV 210 (312)
Q Consensus 156 EL~r~kad~----qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~ 210 (312)
+......+. +.+..+|.+.+.|..++...+..++............+..+++-+.
T Consensus 187 eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik 245 (294)
T COG1340 187 EAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIK 245 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 776655421 2345566666666666666666666555555555555544444443
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=96.85 E-value=0.076 Score=55.29 Aligned_cols=30 Identities=10% Similarity=0.338 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465 72 SHITMREDLAAAQQEIPRIKAHIRNIHTES 101 (312)
Q Consensus 72 th~~L~qeL~aaq~Elq~L~~~~~~~~ae~ 101 (312)
+|..+..+|...+..|......+..++-+.
T Consensus 250 ~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~ 279 (569)
T PRK04778 250 DHLDIEKEIQDLKEQIDENLALLEELDLDE 279 (569)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 344555566666666666555555554443
No 59
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.83 E-value=0.053 Score=52.88 Aligned_cols=110 Identities=21% Similarity=0.241 Sum_probs=91.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHHHHHHHHhhcHH
Q 021465 119 CKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPD-LHAELDSLRQEHRRLRATFEYEKGLNID 197 (312)
Q Consensus 119 lra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~a-lraELe~LrqElq~~RaaiE~EKk~~~e 197 (312)
.+..+.|+.+...+..+++.+....-+|....+.++.++..++.-..++.. ...|+..+|.++...-..++..++...+
T Consensus 150 ~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e 229 (312)
T smart00787 150 DENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEE 229 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888888888888888888899888888753333322 3568889998888888889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 198 NVEQLQAMEKNLVGMAREMEKLHAEVVNAEM 228 (312)
Q Consensus 198 lleq~qaMEknL~~marEvekLrAEIanaek 228 (312)
+-++++..+..+.+...+..+++.+|+.+++
T Consensus 230 ~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 230 LEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986
No 60
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.81 E-value=0.16 Score=53.53 Aligned_cols=144 Identities=20% Similarity=0.311 Sum_probs=82.7
Q ss_pred CCchhhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH---HHHHhHHHHHHhhhhhchhhHHHH----HHHHHh---
Q 021465 43 EPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAA---AQQEIPRIKAHIRNIHTESDSHIR----VLLDKI--- 112 (312)
Q Consensus 43 ~p~p~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~a---aq~Elq~L~~~~~~~~ae~e~qiR----~L~ek~--- 112 (312)
+|.|+|.. ++....-++....+|++|..+.+.+..+|+. .+-.++.|...++......+..|+ ....+.
T Consensus 101 DP~pll~s-a~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~ 179 (629)
T KOG0963|consen 101 DPVPLLAS-AAELLNKQQKASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQE 179 (629)
T ss_pred CCchHHHH-HHHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45553332 3334444555788888888888888877664 455677777766666666666666 222222
Q ss_pred -hhhhHhh-hhhHHHHHHHHHHHHHHHHHHHH---------------HHH---HHHHHHHHHHHHHHHHHhcccchhHHH
Q 021465 113 -AKMEADC-KAGERLKKDLQQAHIEAQSLARA---------------RQE---LTSKIQQASEALHKARLEVKNLPDLHA 172 (312)
Q Consensus 113 -~k~Eael-ra~e~lk~EL~q~r~e~q~L~~~---------------rqe---L~aevq~l~~EL~r~kad~qql~alra 172 (312)
+.-|++| .....+...+.++...+.+|.+. +++ ..++|-.++.+|++++. .|..+.+
T Consensus 180 ~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~---ri~~lE~ 256 (629)
T KOG0963|consen 180 WAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQ---RIVFLER 256 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 2223333 22344455555555555554211 222 34556667777777774 7777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021465 173 ELDSLRQEHRRLRATFEY 190 (312)
Q Consensus 173 ELe~LrqElq~~RaaiE~ 190 (312)
|.+.|+.++.......+.
T Consensus 257 e~e~L~~ql~~~N~~~~~ 274 (629)
T KOG0963|consen 257 EVEQLREQLAKANSSKKL 274 (629)
T ss_pred HHHHHHHHHHhhhhhhhh
Confidence 887777666655554443
No 61
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.80 E-value=0.35 Score=48.83 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=13.3
Q ss_pred CCCCCcccccccccCCCCCCCCC
Q 021465 258 VDGYSQPLLQMGVVQTGEGMIPY 280 (312)
Q Consensus 258 ~~~Yg~~~~~~~~~~~~~~~~p~ 280 (312)
|--|...-.-+|+|-.|+.-||+
T Consensus 364 Greyv~rv~sagnyv~ger~i~~ 386 (499)
T COG4372 364 GREYVTRVTSAGNYVTGERLIPR 386 (499)
T ss_pred CCCeeEeecccCcccccchhhHH
Confidence 33455544466666666666664
No 62
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.80 E-value=0.21 Score=52.93 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=17.4
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465 59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKA 92 (312)
Q Consensus 59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~ 92 (312)
++....+|+.|..-....+..|..++..++++..
T Consensus 103 lqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e 136 (617)
T PF15070_consen 103 LQAQVENNEQLSRLNQEQEERLAELEEELERLQE 136 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555554444445555555555555544
No 63
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.79 E-value=0.25 Score=54.99 Aligned_cols=133 Identities=16% Similarity=0.269 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhh-------hHHHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhh
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAA-------SHITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKME 116 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~-------th~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~E 116 (312)
..+++...-+.+|.....-+..+.. ....++.+..+...|+..++....+++-+. +.++++..- .+.
T Consensus 292 ~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n---~i~ 368 (1074)
T KOG0250|consen 292 KKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIEN---SIR 368 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 3566667777777777766666553 333344444444555555555555444432 222222222 222
Q ss_pred HhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Q 021465 117 ADCKAGERLKKDLQQAHIEA-QSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLR 185 (312)
Q Consensus 117 aelra~e~lk~EL~q~r~e~-q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~R 185 (312)
+.-+..+.+++.+..++.+. +.+...+.++-.++..|.+++++.+. ++..|+.+++.++.++...+
T Consensus 369 ~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~---~~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 369 KLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE---QINSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhH
Confidence 23344455555666666555 66666666777777777777776665 56666666666654444333
No 64
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.76 E-value=0.14 Score=56.44 Aligned_cols=165 Identities=15% Similarity=0.145 Sum_probs=72.6
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHH
Q 021465 59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIE 135 (312)
Q Consensus 59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e 135 (312)
.=.++.+|+|+-.+.. ++.+. ++..+-.-+..++.|+ +..++.|.+++-.+--.+-..+-+-+.|...+.+
T Consensus 374 alkllLEnrrlt~tle----elqss--s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ek 447 (1195)
T KOG4643|consen 374 ALKLLLENRRLTGTLE----ELQSS--SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEK 447 (1195)
T ss_pred HHHHHHHhHHHHHHHH----HHhhh--hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888777773 33333 5555555555555554 4556666666655543333333333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHH
Q 021465 136 AQSLARARQELTSKIQQASEALHKARLEV----KNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVG 211 (312)
Q Consensus 136 ~q~L~~~rqeL~aevq~l~~EL~r~kad~----qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~ 211 (312)
++.=..-.+.-+++-+.++.++.+.-.+. ++++.++..|..+.+=|....-.+..-.....++.+|.+++...+..
T Consensus 448 l~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~ 527 (1195)
T KOG4643|consen 448 LLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYEL 527 (1195)
T ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222222222222111 12233333333333322222222222333334455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 021465 212 MAREMEKLHAEVVNAEMR 229 (312)
Q Consensus 212 marEvekLrAEIanaekr 229 (312)
.....+.|++.+-+.+.+
T Consensus 528 ~~~k~eeLe~~l~~lE~E 545 (1195)
T KOG4643|consen 528 LSNKLEELEELLGNLEEE 545 (1195)
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 555666666666555543
No 65
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.74 E-value=0.13 Score=53.64 Aligned_cols=158 Identities=19% Similarity=0.299 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHH----------HHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhh
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHI----------TMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKME 116 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~----------~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~E 116 (312)
-|++-...+.-+|.+|-..|..|-.-.. .||..-+++|.|+++..+ .+-.+..|...|+
T Consensus 225 ~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~-----------y~~~~~~k~~~~~ 293 (581)
T KOG0995|consen 225 RLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQA-----------YVSQMKSKKQHME 293 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHH-----------HHHHHHhhhHHHH
Confidence 5566666677788888888888765443 344455555555555555 5666777777766
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 021465 117 ADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNI 196 (312)
Q Consensus 117 aelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ 196 (312)
. .++.|+.|++....|+++|.....+|-.++.... + - ..+++.+..|.+.|.+++......++...|.-.
T Consensus 294 ~---~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~--i---S--~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 294 K---KLEMLKSEIEEKEEEIEKLQKENDELKKQIELQG--I---S--GEDVERMNLERNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4466888888888888888877777766664431 1 0 122333444444444444444444444333332
Q ss_pred HhHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 197 DNVE----QLQAMEKNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 197 elle----q~qaMEknL~~marEvekLrAEIan 225 (312)
++=- ..+..++.++....-+.+|.--|++
T Consensus 364 ~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~ 396 (581)
T KOG0995|consen 364 ELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAE 396 (581)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2255566666666666666555443
No 66
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.19 Score=54.47 Aligned_cols=85 Identities=14% Similarity=0.274 Sum_probs=66.7
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 69 LAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTS 148 (312)
Q Consensus 69 La~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~a 148 (312)
|-+..-.|.++|.+++.-+|.|..-+.+++...--+--++..-....|-.+..+..|++.|.+....+++|.-.+|+|-.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 55666678889999999999999888898888877777777666666777777777888888888888888888887777
Q ss_pred HHHHH
Q 021465 149 KIQQA 153 (312)
Q Consensus 149 evq~l 153 (312)
+++..
T Consensus 515 qlkq~ 519 (1118)
T KOG1029|consen 515 QLKQK 519 (1118)
T ss_pred HHHHh
Confidence 76654
No 67
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=96.72 E-value=0.062 Score=45.72 Aligned_cols=95 Identities=21% Similarity=0.266 Sum_probs=76.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHh
Q 021465 119 CKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDN 198 (312)
Q Consensus 119 lra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~el 198 (312)
...++.|...|.+...|+..|...-..|..+-..+++||-+.-.++..+.+...++..|++++..++..++.-....=+.
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 45678899999999999999999999999999999999999998888888888899999999999888877755555555
Q ss_pred HHHHHHHHHHHHHHH
Q 021465 199 VEQLQAMEKNLVGMA 213 (312)
Q Consensus 199 leq~qaMEknL~~ma 213 (312)
.|++..++.++..|.
T Consensus 95 ~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 95 SEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555554454444443
No 68
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.72 E-value=0.33 Score=53.70 Aligned_cols=108 Identities=14% Similarity=0.288 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhhhhhhh-------hhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhHh--
Q 021465 51 KIAVQAAEIERLARDNHR-------LAASHITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEAD-- 118 (312)
Q Consensus 51 ~l~~q~~Ei~~L~~dNqr-------La~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Eae-- 118 (312)
.|..+..+|..|..+=|+ +-..|..|++++.....|..++...+....-+- ...++.+.++..-.|++
T Consensus 693 ~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el~ 772 (1200)
T KOG0964|consen 693 EIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESELG 772 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 344444445444444444 455666666777666666666655433222211 23334444444444444
Q ss_pred -----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 119 -----------CKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALH 158 (312)
Q Consensus 119 -----------lra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~ 158 (312)
+..+.+|..++.+++.+...+...|-++.+....+.-.|.
T Consensus 773 sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~ 823 (1200)
T KOG0964|consen 773 SELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLN 823 (1200)
T ss_pred HHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556667777777777777777777666666666553
No 69
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=96.69 E-value=0.22 Score=44.39 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHH
Q 021465 213 AREMEKLHAEVVNAE 227 (312)
Q Consensus 213 arEvekLrAEIanae 227 (312)
..++..||++|++..
T Consensus 137 ~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 137 DTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666666544
No 70
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=96.66 E-value=0.28 Score=55.19 Aligned_cols=31 Identities=19% Similarity=0.271 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 131 QAHIEAQSLARARQELTSKIQQASEALHKAR 161 (312)
Q Consensus 131 q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k 161 (312)
+++.++.+....+.++...+..++.++.-++
T Consensus 606 ~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~ 636 (1317)
T KOG0612|consen 606 KLRSELEKERRQRTEISEIIAELKEEISSLE 636 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444444444444444444444444443333
No 71
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.65 E-value=0.45 Score=55.70 Aligned_cols=183 Identities=16% Similarity=0.216 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH-------HHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhH--
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMRE-------DLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEA-- 117 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~q-------eL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Ea-- 117 (312)
.|++-|..-.+|+..|..-|+-|-.++..-++ +|.++..-+.++.+-+..++.|+ .++...++.++-|-
T Consensus 693 ~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~--~ll~~t~~rL~~e~~~ 770 (1822)
T KOG4674|consen 693 NLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEK--LLLKETEERLSQELEK 770 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 45555555666666666666666655544333 44444455555555555555555 33333333333221
Q ss_pred hhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 118 DCKAGERLKKDLQQAH----IEAQSLARARQELTSKIQQASEALHKARLEVKNL-PDLHAELDSLRQEHRRLRATFEYEK 192 (312)
Q Consensus 118 elra~e~lk~EL~q~r----~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql-~alraELe~LrqElq~~RaaiE~EK 192 (312)
-......++..|..++ .--+...+.++.+-.++..|..+|++++.++++- ..++.-...+...+..++..|+.++
T Consensus 771 l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~ 850 (1822)
T KOG4674|consen 771 LSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELE 850 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 1111111111111111 0111122333334444444444444444322211 2222223444567777777788888
Q ss_pred hhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465 193 GLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGH 231 (312)
Q Consensus 193 k~~~elleq~qaMEknL~~marEvekLrAEIanaekra~ 231 (312)
+.+...+.++.....++..+..++..|..+|...+.+..
T Consensus 851 ~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~ 889 (1822)
T KOG4674|consen 851 SELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLL 889 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 888888888888888888888888888888887765544
No 72
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.60 E-value=0.43 Score=54.04 Aligned_cols=17 Identities=35% Similarity=0.675 Sum_probs=6.8
Q ss_pred HhcccchhHHHHHHHHH
Q 021465 162 LEVKNLPDLHAELDSLR 178 (312)
Q Consensus 162 ad~qql~alraELe~Lr 178 (312)
.++.++|.++.+++.++
T Consensus 349 ~~~~~l~~~~~~~~~l~ 365 (1201)
T PF12128_consen 349 ARVDQLPEWRNELENLQ 365 (1201)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 33333444444444443
No 73
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.60 E-value=1 Score=45.95 Aligned_cols=113 Identities=20% Similarity=0.282 Sum_probs=64.0
Q ss_pred hhchhhHHHHHHHHHhhhhhHh--hhhh--HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 021465 97 IHTESDSHIRVLLDKIAKMEAD--CKAG--ERLKKDLQQAH--------IEAQSLARARQELTSKIQQASEALHKA---- 160 (312)
Q Consensus 97 ~~ae~e~qiR~L~ek~~k~Eae--lra~--e~lk~EL~q~r--------~e~q~L~~~rqeL~aevq~l~~EL~r~---- 160 (312)
+..|.|-++-.|+.|+.|+|.+ ++.+ +.||.|..|+. +-+.+|-.--+.|-.+..-|.+.|+.-
T Consensus 152 leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p 231 (552)
T KOG2129|consen 152 LEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTP 231 (552)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 4567788899999999999876 3444 56665555442 111222222222222222222222110
Q ss_pred --HHhcc--------cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHH
Q 021465 161 --RLEVK--------NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209 (312)
Q Consensus 161 --kad~q--------ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL 209 (312)
-.|+. .-.+++.-|+.|+.|++|+|..+-.-.|.+.+.+.|..+=|+++
T Consensus 232 ~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~ 290 (552)
T KOG2129|consen 232 SLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDH 290 (552)
T ss_pred CchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 01111 12456778888999999999888877777777777664444433
No 74
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.56 E-value=0.18 Score=52.54 Aligned_cols=177 Identities=15% Similarity=0.289 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHH----hhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh-hHHHHHHHHHhhh----hhHhh
Q 021465 49 EDKIAVQAAEIE----RLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES-DSHIRVLLDKIAK----MEADC 119 (312)
Q Consensus 49 E~~l~~q~~Ei~----~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~-e~qiR~L~ek~~k----~Eael 119 (312)
...+-.|-.|++ .+..++ ..-.|..+..+|...++.|..+...+..+.-+. +..+..+.+++-. ||.|+
T Consensus 221 ~~~~P~ql~eL~~gy~~m~~~g--y~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~ 298 (560)
T PF06160_consen 221 QKEFPDQLEELKEGYREMEEEG--YYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEV 298 (560)
T ss_pred HHHhHHHHHHHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444544443 333333 444567777788888888887777777666554 3333333333333 47788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH
Q 021465 120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV 199 (312)
Q Consensus 120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ell 199 (312)
.+...++..+..+...+..+....+.|..++..+.+--.=...|....-.+..+|+.+...+......++..+..+....
T Consensus 299 ~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~ 378 (560)
T PF06160_consen 299 EAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQ 378 (560)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 88888888888888888888888888888888777654333334445566777788888888888888877777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 200 EQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 200 eq~qaMEknL~~marEvekLrAEIanae 227 (312)
+.++.+.++|.....+..++...|.+..
T Consensus 379 ~~l~~~~~~l~~ie~~q~~~~~~l~~L~ 406 (560)
T PF06160_consen 379 EELEEIEEQLEEIEEEQEEINESLQSLR 406 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666666666666665555544
No 75
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.51 E-value=0.23 Score=57.93 Aligned_cols=144 Identities=21% Similarity=0.282 Sum_probs=74.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLK 126 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk 126 (312)
+|=.....-..++.-+-.||.||...+..+.+.+..++..|-..++-- ..-+..+.+.-++..+..-|-...-.+--||
T Consensus 1157 ~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~-q~~a~s~~e~~~i~~~v~~vNll~EsN~~LR 1235 (1822)
T KOG4674|consen 1157 FLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASS-QKSAVSDDEHKEILEKVEEVNLLRESNKVLR 1235 (1822)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhhhhhhhHHHHHHHHHHHHHHhHHHHH
Confidence 444455555666777888899999999888888888888887776532 1122333344444444444432223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHH
Q 021465 127 KDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQ 201 (312)
Q Consensus 127 ~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq 201 (312)
.++...-..+ ++|..++..+..+|...+. .+..+++++....+|+..++...+.=|+-+++++++
T Consensus 1236 ee~~~~~~k~-------qEl~~~i~kl~~el~plq~---~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1236 EENEANLEKI-------QELRDKIEKLNFELAPLQN---ELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHHHHHHH-------HHHHHHHHHHHhhHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322222 3444444444444444443 334444444444444444444444444444444444
No 76
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.50 E-value=0.85 Score=51.69 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021465 124 RLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEY 190 (312)
Q Consensus 124 ~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~ 190 (312)
.++.+++.++....-|.+.=+++..++..+.+.|..... .++...+++++.++.++...+..++.
T Consensus 356 ~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~--~~~~~~~~~~~~~~e~~~~~~~~~~~ 420 (1201)
T PF12128_consen 356 EWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFN--RQQERLQAQQDEIREEKAERREQIEE 420 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555544443 34555556666666555555554443
No 77
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.45 E-value=0.058 Score=52.48 Aligned_cols=122 Identities=13% Similarity=0.167 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 74 ITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQA 153 (312)
Q Consensus 74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l 153 (312)
..|+.++..++.|.+........++. .+....+..++..++++|.....+|..++..+
T Consensus 12 ~~l~~~~~~~~~E~~~Y~~fL~~l~~----------------------~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~L 69 (314)
T PF04111_consen 12 EQLDKQLEQAEKERDTYQEFLKKLEE----------------------ESDSEEDIEELEEELEKLEQEEEELLQELEEL 69 (314)
T ss_dssp ----------------------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----------------------cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665555444441 12233444555555555555555666666665
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 154 SEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 154 ~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae 227 (312)
.++-+.... ||..++.|...+...-+...+.++.+.-++..+++..+++..+++....+|.+..
T Consensus 70 E~e~~~l~~----------el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 70 EKEREELDQ----------ELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555442 3333333333333332233333344444444555555555666666655555444
No 78
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.42 E-value=0.73 Score=51.86 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 134 IEAQSLARARQELTSKIQQASEALHK 159 (312)
Q Consensus 134 ~e~q~L~~~rqeL~aevq~l~~EL~r 159 (312)
.|+.=|...-..++.++..++..|..
T Consensus 507 sel~~L~~~~~~~~~~~e~lk~~L~~ 532 (1293)
T KOG0996|consen 507 SELDILLSRHETGLKKVEELKGKLLA 532 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444433
No 79
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.39 E-value=0.69 Score=45.26 Aligned_cols=30 Identities=17% Similarity=0.164 Sum_probs=16.3
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhHHH
Q 021465 61 RLARDNHRLAASHITMREDLAAAQQEIPRI 90 (312)
Q Consensus 61 ~L~~dNqrLa~th~~L~qeL~aaq~Elq~L 90 (312)
.|...|..|......-...+.-++|||..-
T Consensus 94 ~L~~~~~~le~~L~~~~e~v~qLrHeL~~k 123 (306)
T PF04849_consen 94 DLSERNEALEEQLGAALEQVEQLRHELSMK 123 (306)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555543
No 80
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=96.38 E-value=0.3 Score=45.37 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 021465 73 HITMREDLAAAQQEIPRIKA 92 (312)
Q Consensus 73 h~~L~qeL~aaq~Elq~L~~ 92 (312)
...++.+|..++.+...|..
T Consensus 22 L~~~~~~l~~~~~~~~~l~~ 41 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRR 41 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555
No 81
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.38 E-value=0.12 Score=45.72 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=18.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhh
Q 021465 67 HRLAASHITMREDLAAAQQEIPRIKAHIRNIH 98 (312)
Q Consensus 67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ 98 (312)
.++......+++.|..+++|+..+...+.++.
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~ 108 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELE 108 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666433333
No 82
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.37 E-value=0.41 Score=41.82 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 021465 168 PDLHAELDSLRQEHRRLRATFEY 190 (312)
Q Consensus 168 ~alraELe~LrqElq~~RaaiE~ 190 (312)
..++.|-+.|-++++..+..|..
T Consensus 76 ~~l~sEk~~L~k~lq~~q~kv~e 98 (140)
T PF10473_consen 76 DTLRSEKENLDKELQKKQEKVSE 98 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433
No 83
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.36 E-value=1 Score=52.31 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIanae 227 (312)
+.++..+.++.+++..+.+.+....
T Consensus 452 ee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 452 QEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554433
No 84
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.35 E-value=0.67 Score=49.28 Aligned_cols=59 Identities=14% Similarity=0.321 Sum_probs=31.2
Q ss_pred hhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 97 IHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASE 155 (312)
Q Consensus 97 ~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~ 155 (312)
+..|.|.++.+|..+...++.+......|=..++-.+.-+.+.+++.++|-.++..+..
T Consensus 116 L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~ 174 (617)
T PF15070_consen 116 LNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQD 174 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHH
Confidence 44566667777766666665554444444334444444445555555555555544444
No 85
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.34 E-value=0.49 Score=47.82 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=14.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465 68 RLAASHITMREDLAAAQQEIPRIKA 92 (312)
Q Consensus 68 rLa~th~~L~qeL~aaq~Elq~L~~ 92 (312)
-|......++++|..++.+|+..+.
T Consensus 165 fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 165 FIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666665544
No 86
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.33 E-value=0.59 Score=48.24 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=55.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhh------hHHHHHHHHHHHHHHHHHH
Q 021465 67 HRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKA------GERLKKDLQQAHIEAQSLA 140 (312)
Q Consensus 67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra------~e~lk~EL~q~r~e~q~L~ 140 (312)
.-+...+..++..+...+.|+..-+.-...+-..+|..|..|-++...- .+.. .+.||.|...++.+++.|.
T Consensus 217 ~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~--~~~~~~~~~el~~l~~E~~~~~ee~~~l~ 294 (511)
T PF09787_consen 217 GELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEE--GFDSSTNSIELEELKQERDHLQEEIQLLE 294 (511)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhccccc--ccccccchhcchhhHHHHHHHHHHHHHHH
Confidence 3333444445555555555555555444555566666666666644331 1111 5678888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021465 141 RARQELTSKIQQASEALHK 159 (312)
Q Consensus 141 ~~rqeL~aevq~l~~EL~r 159 (312)
.+-++|..+++.+..++..
T Consensus 295 ~Qi~~l~~e~~d~e~~~~~ 313 (511)
T PF09787_consen 295 RQIEQLRAELQDLEAQLEG 313 (511)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8877777777777666544
No 87
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=96.32 E-value=0.25 Score=53.25 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=27.3
Q ss_pred CCchhhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHH
Q 021465 43 EPLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPR 89 (312)
Q Consensus 43 ~p~p~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~ 89 (312)
+++|+|.++|+--..||..=+++ |.-...|+..|..++.|+.+
T Consensus 455 ~~~~~L~e~IeKLk~E~d~e~S~----A~~~~gLk~kL~~Lr~E~sK 497 (762)
T PLN03229 455 PSELALNEMIEKLKKEIDLEYTE----AVIAMGLQERLENLREEFSK 497 (762)
T ss_pred CCChHHHHHHHHHHHHHHHHHHH----hhhhhhHHHHHHHHHHHHHh
Confidence 46889999999888887543322 33455556666666555555
No 88
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.32 E-value=0.71 Score=50.88 Aligned_cols=164 Identities=18% Similarity=0.248 Sum_probs=84.8
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHH-----
Q 021465 59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAH----- 133 (312)
Q Consensus 59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r----- 133 (312)
+.+.-..|.-|-.-.-.+-+..+.+|.||.+-+.....++.-+|...++|.|-.-.||. --|.+|+-+.|
T Consensus 257 lekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEm-----aTldKEmAEERaesLQ 331 (1243)
T KOG0971|consen 257 LEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEM-----ATLDKEMAEERAESLQ 331 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHH
Confidence 34444444444444555556667777777777777777777777777777776665553 22333443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-----hHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHH
Q 021465 134 IEAQSLARARQELTSKIQQASEALHKARLEVKNLP-----DLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKN 208 (312)
Q Consensus 134 ~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~-----alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEkn 208 (312)
.|+..+..--.+|..++.-|+.|++..=.|.+-.. .+-..-+.||.-+.++|...-.+|-.+++....+......
T Consensus 332 ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE 411 (1243)
T KOG0971|consen 332 QEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSE 411 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhH
Confidence 33333333444444555555555544333332111 1111123344444555554444555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021465 209 LVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 209 L~~marEvekLrAEIanae 227 (312)
+.++.+.-|+|.+++.++|
T Consensus 412 ~~eL~r~kE~Lsr~~d~aE 430 (1243)
T KOG0971|consen 412 LEELRRQKERLSRELDQAE 430 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555556655555555
No 89
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.31 E-value=0.59 Score=49.43 Aligned_cols=182 Identities=15% Similarity=0.230 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHH--HHHHhhhhhHhh-hhhH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRV--LLDKIAKMEADC-KAGE 123 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~--L~ek~~k~Eael-ra~e 123 (312)
-.+++...+..|++.|-..=+.|....+.++.++...+-++..+...+...+.+.+..-.+ +.+|...|--+- ..++
T Consensus 318 ~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~ 397 (594)
T PF05667_consen 318 TEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIA 397 (594)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5566666777777777655555555555555555555555555544433333332111111 222222221111 1122
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH
Q 021465 124 RLKKDLQQAHIE----AQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV 199 (312)
Q Consensus 124 ~lk~EL~q~r~e----~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ell 199 (312)
.|..-++..... .+.....|..|+.++..++........+. -....+|..+++++..+-..+...-..+..+.
T Consensus 398 kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~---~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~ 474 (594)
T PF05667_consen 398 KLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESES---KQKLQEIKELREEIKEIEEEIRQKEELYKQLV 474 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222 22344567777777777776554322211 11223444444444433333222222222222
Q ss_pred HHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465 200 EQL---------QAMEKNLVGMAREMEKLHAEVVNAEMRGH 231 (312)
Q Consensus 200 eq~---------qaMEknL~~marEvekLrAEIanaekra~ 231 (312)
.++ ..|.+-+.++..-|.|-+.||.+.-...|
T Consensus 475 ~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr 515 (594)
T PF05667_consen 475 KELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTR 515 (594)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 222 78888899999999999999988765444
No 90
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=96.30 E-value=1.1 Score=51.64 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Q 021465 51 KIAVQAAEIERLARDNHRLAASHITMREDLA 81 (312)
Q Consensus 51 ~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~ 81 (312)
+|+.-..+|..|-..-..+.+.+..|.+.+.
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~ 773 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELARELRALGARQR 773 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444443333333333333333333
No 91
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=96.26 E-value=0.98 Score=41.93 Aligned_cols=24 Identities=8% Similarity=0.344 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 201 QLQAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 201 q~qaMEknL~~marEvekLrAEIa 224 (312)
..+.-+..+..+...+..-|..+.
T Consensus 127 ~~~~~~~~l~~l~~~l~~~r~~l~ 150 (302)
T PF10186_consen 127 ELEERKQRLSQLQSQLARRRRQLI 150 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555444
No 92
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.24 E-value=0.93 Score=41.46 Aligned_cols=117 Identities=18% Similarity=0.277 Sum_probs=56.0
Q ss_pred HHhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHH-----HHHHHHHHHHHH
Q 021465 110 DKIAKMEADC-KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLH-----AELDSLRQEHRR 183 (312)
Q Consensus 110 ek~~k~Eael-ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alr-----aELe~LrqElq~ 183 (312)
++.-..|++| +-+.....|+..++..+++....-.++..++.....+|.+.+.+++.+..+- .|.+.|..++..
T Consensus 50 ~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~ 129 (194)
T PF15619_consen 50 QKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQ 129 (194)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence 3333345555 4445555555555566655555555555555555555555555444433322 233444444444
Q ss_pred HHHHHHH--------------HHhhcHHhHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 184 LRATFEY--------------EKGLNIDNVEQL----QAMEKNLVGMAREMEKLHAEVVNA 226 (312)
Q Consensus 184 ~RaaiE~--------------EKk~~~elleq~----qaMEknL~~marEvekLrAEIana 226 (312)
+...++. ..+.+.-++..- .....++..+..|++.|...|..-
T Consensus 130 ~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEK 190 (194)
T PF15619_consen 130 LEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEK 190 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 333322222221 444555555555666666555543
No 93
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.21 E-value=0.6 Score=51.45 Aligned_cols=43 Identities=19% Similarity=0.377 Sum_probs=32.2
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465 59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES 101 (312)
Q Consensus 59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~ 101 (312)
+-+|--.|+||.++.|.||.-.+..+++.|++.--....+.|.
T Consensus 370 fkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~ 412 (1243)
T KOG0971|consen 370 FKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSEL 412 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHH
Confidence 4456667999999999999888888888888766544444444
No 94
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.20 E-value=0.52 Score=49.33 Aligned_cols=65 Identities=22% Similarity=0.353 Sum_probs=45.2
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhch-----h-----hHHHHHHHHHhhhhhHhhh
Q 021465 56 AAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTE-----S-----DSHIRVLLDKIAKMEADCK 120 (312)
Q Consensus 56 ~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae-----~-----e~qiR~L~ek~~k~Eaelr 120 (312)
..||..+--||++|+...-.|+.+|.-...-+--|..+...+.+. + |+-+-.--+++.|||++|.
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLk 404 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLK 404 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999899988876655555555555544432 2 3333333488899998874
No 95
>PF13514 AAA_27: AAA domain
Probab=96.13 E-value=1.6 Score=48.91 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=52.7
Q ss_pred HHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhcccchhHH
Q 021465 105 IRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELT-------------SKIQQASEALHKARLEVKNLPDLH 171 (312)
Q Consensus 105 iR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~-------------aevq~l~~EL~r~kad~qql~alr 171 (312)
+....+....+-..++....++..+.+.+.++..|...-..|. .-+..++..|...+...+++..++
T Consensus 728 ~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~~~~~~~l~ 807 (1111)
T PF13514_consen 728 ALEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREAQEERERLQ 807 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444433333 445666666766666666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHhHHH
Q 021465 172 AELDSLRQEHRRLRATFEYEKGLNIDNVEQ 201 (312)
Q Consensus 172 aELe~LrqElq~~RaaiE~EKk~~~elleq 201 (312)
.+++.+++++..++..++.-.+...+++..
T Consensus 808 ~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~ 837 (1111)
T PF13514_consen 808 EQLEELEEELEQAEEELEELEAELAELLEQ 837 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777766655544444444443
No 96
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.13 E-value=0.081 Score=47.69 Aligned_cols=110 Identities=23% Similarity=0.351 Sum_probs=29.6
Q ss_pred chhhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhh----h
Q 021465 45 LPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADC----K 120 (312)
Q Consensus 45 ~p~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eael----r 120 (312)
.+-+++++.....|+..+.-.+-.|+...+.+..+|..+..++......|..++++. ..|..++..++.+| +
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~----~~L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAEL----AQLEEKIKDLEEELKEKNK 144 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 348899999999999999888888888888877877777777777766555555544 22333333333332 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 121 AGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALH 158 (312)
Q Consensus 121 a~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~ 158 (312)
.++-+++|+..++.+.-.+......|..+-..|-+-+.
T Consensus 145 ~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 145 ANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444444444444444444443
No 97
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.06 E-value=0.98 Score=46.08 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=40.9
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhh---HHHH-HHHHHhhhh
Q 021465 58 EIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESD---SHIR-VLLDKIAKM 115 (312)
Q Consensus 58 Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e---~qiR-~L~ek~~k~ 115 (312)
-|..|...|.-|....+.++-.--..|+|-+-|+..-+.|++--| .-|- -|..|+.-+
T Consensus 51 rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal 112 (552)
T KOG2129|consen 51 RVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQAL 112 (552)
T ss_pred HHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHh
Confidence 355578889999999999998889999999888766555544332 2333 566666544
No 98
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.01 E-value=0.48 Score=51.15 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-
Q 021465 124 RLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL- 202 (312)
Q Consensus 124 ~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~- 202 (312)
.||.|+.+.+..=++|..---+|-.+--.|.+.+.-.+. -+.|.|+|+.|+.++...+++-+....+.+.=.
T Consensus 80 ~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~-------sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~ 152 (717)
T PF09730_consen 80 RLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ-------SQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKE 152 (717)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655556666666666666666666655553 335667777777776666665444333322222
Q ss_pred ---HHHHHHHHHHHHHHH---HHHHHHHH
Q 021465 203 ---QAMEKNLVGMAREME---KLHAEVVN 225 (312)
Q Consensus 203 ---qaMEknL~~marEve---kLrAEIan 225 (312)
+.||.-|.++..|=| .||.||..
T Consensus 153 iae~qleEALesl~~EReqk~~LrkEL~~ 181 (717)
T PF09730_consen 153 IAEKQLEEALESLKSEREQKNALRKELDQ 181 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555433 46666654
No 99
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.99 E-value=0.98 Score=39.51 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=15.3
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHH
Q 021465 59 IERLARDNHRLAASHITMREDLAAAQQEIPRI 90 (312)
Q Consensus 59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L 90 (312)
+.+.-.++-.|-.....|+++|...+.+...+
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~ 43 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECL 43 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHH
Confidence 33344444444444555555555555444444
No 100
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=95.98 E-value=1 Score=40.85 Aligned_cols=109 Identities=17% Similarity=0.292 Sum_probs=54.8
Q ss_pred HHHHHHHhhhhhHhhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHH
Q 021465 105 IRVLLDKIAKMEADCKAGER-------LKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSL 177 (312)
Q Consensus 105 iR~L~ek~~k~Eaelra~e~-------lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~L 177 (312)
.-+|.+-..+||.+-+-++. ||..|++.+...+.|...-+.|+.++..++.+|..... ..
T Consensus 59 s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~-------------~~ 125 (182)
T PF15035_consen 59 SPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEA-------------EW 125 (182)
T ss_pred cccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH
Confidence 34455555556555544444 55555555555444443333333333333333333222 33
Q ss_pred HHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 021465 178 RQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAR----EMEKLHAEVVNA 226 (312)
Q Consensus 178 rqElq~~RaaiE~EKk~~~elleq~qaMEknL~~mar----EvekLrAEIana 226 (312)
+.|-+....-+..|.+.--.+-.++......+.+|.. .+..+++|+++.
T Consensus 126 ~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~r~ 178 (182)
T PF15035_consen 126 REEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFART 178 (182)
T ss_pred HHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333333333444444444555666777777776654 556677777654
No 101
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.98 E-value=1.4 Score=46.74 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKA 92 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~ 92 (312)
-|.+.|..-..+|..+..+-..|..++..+..++...+.++.++..
T Consensus 332 ~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~ 377 (594)
T PF05667_consen 332 ELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEE 377 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666666666666655544
No 102
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=95.95 E-value=0.37 Score=52.00 Aligned_cols=136 Identities=15% Similarity=0.299 Sum_probs=87.6
Q ss_pred hhHHHHHHHHHHHHhh-hhhhh----hhhhhHHHHHHHHH----------HHHHHhHHHHHHhhhhhchhhHHHHHHHHH
Q 021465 47 LLEDKIAVQAAEIERL-ARDNH----RLAASHITMREDLA----------AAQQEIPRIKAHIRNIHTESDSHIRVLLDK 111 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L-~~dNq----rLa~th~~L~qeL~----------aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek 111 (312)
=||++++.-..||-.= -+.|| -|-.....|++|+. .+++=|..|+....++++....--..|.||
T Consensus 433 ~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK 512 (762)
T PLN03229 433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEK 512 (762)
T ss_pred cHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHH
Confidence 6899999999998766 33443 35566666666542 356666677755555555544455678899
Q ss_pred hhhhhHhh--hhhH-----HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH------HHHHHHHHHHhcccc--
Q 021465 112 IAKMEADC--KAGE-----RLKKDLQQAHIEAQ---------SLARARQELTSKIQQ------ASEALHKARLEVKNL-- 167 (312)
Q Consensus 112 ~~k~Eael--ra~e-----~lk~EL~q~r~e~q---------~L~~~rqeL~aevq~------l~~EL~r~kad~qql-- 167 (312)
+.|+-.|+ +-.+ .||..|+-++.+++ +....+++|-.++.. ++++++.+++++.++
T Consensus 513 ~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~ 592 (762)
T PLN03229 513 IEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGA 592 (762)
T ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc
Confidence 88887775 3334 67778888887776 455567777777777 677766666654443
Q ss_pred -------hhHHHHHHHHHHHHH
Q 021465 168 -------PDLHAELDSLRQEHR 182 (312)
Q Consensus 168 -------~alraELe~LrqElq 182 (312)
+.++..|+.+++|+.
T Consensus 593 s~~~~~~~~lkeki~~~~~Ei~ 614 (762)
T PLN03229 593 SSGDELDDDLKEKVEKMKKEIE 614 (762)
T ss_pred cccCCCCHHHHHHHHHHHHHHH
Confidence 345555555555444
No 103
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.94 E-value=2.8 Score=46.90 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Q 021465 144 QELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATF 188 (312)
Q Consensus 144 qeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raai 188 (312)
+.|..+...+.+++...+. ++..+...++.+..|+..+++.+
T Consensus 818 e~l~lE~e~l~~e~~~~k~---~l~~~~~~~~~l~~e~~~l~~kv 859 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQ---QLEQLEKQISSLKSELGNLEAKV 859 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433332 34444444444444444444443
No 104
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.93 E-value=0.21 Score=48.21 Aligned_cols=121 Identities=17% Similarity=0.285 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-------HHHH--
Q 021465 136 AQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL-------QAME-- 206 (312)
Q Consensus 136 ~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~-------qaME-- 206 (312)
+.+|...++.-.=++..+..-|.+.+ ++++..+.+.-.|+.|.+.+...++..-+.+..+...+ .-+|
T Consensus 27 ldkLkKE~qQrQfQleSlEAaLqKQK---qK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQ 103 (307)
T PF10481_consen 27 LDKLKKERQQRQFQLESLEAALQKQK---QKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQ 103 (307)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHH
Confidence 33333333333344444555555555 35566666666677666666666666555555555444 2333
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 021465 207 -----KNLVGMAREMEKLHAEVVNAEMRGHAPNPYSRTYTNPIPSYPPSVQGGGVYVD 259 (312)
Q Consensus 207 -----knL~~marEvekLrAEIanaekra~a~~~y~~~~~n~~~~~~~~~~g~~~y~~ 259 (312)
+.+..+..++.+++.||.+....+..+..-=..+..|-..++.|......|.|
T Consensus 104 l~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~ 161 (307)
T PF10481_consen 104 LNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSD 161 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhh
Confidence 44444444555555555544444433321112244455555544433333444
No 105
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.92 E-value=0.8 Score=39.83 Aligned_cols=18 Identities=33% Similarity=0.422 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021465 145 ELTSKIQQASEALHKARL 162 (312)
Q Consensus 145 eL~aevq~l~~EL~r~ka 162 (312)
.|...++.|-.+|++...
T Consensus 77 ~l~rriq~LEeele~ae~ 94 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEK 94 (143)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 455556666666655554
No 106
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=95.92 E-value=2.2 Score=43.41 Aligned_cols=141 Identities=22% Similarity=0.303 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHhh-hhhhhh-----------------hhhhHHHHHHHHHHHHHHhHHHHHHhhh----hhchhhHH
Q 021465 47 LLEDKIAVQAAEIERL-ARDNHR-----------------LAASHITMREDLAAAQQEIPRIKAHIRN----IHTESDSH 104 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L-~~dNqr-----------------La~th~~L~qeL~aaq~Elq~L~~~~~~----~~ae~e~q 104 (312)
.|-+.|+.--+|++.| +.+|-| -+++|.+|++++.++.-.|..++....+ +++-.|-.
T Consensus 249 ~LsE~~~k~~q~Le~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~ 328 (593)
T KOG4807|consen 249 RLSEEIEKKWQELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGH 328 (593)
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhcc
Confidence 4445555555666665 456644 3578999999998887777777665433 33334555
Q ss_pred HHHHHHHh-------hhhhHhh-hhhHHH----HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHh
Q 021465 105 IRVLLDKI-------AKMEADC-KAGERL----KKDLQQAHIEAQSLARARQELT---------SKIQQASEALHKARLE 163 (312)
Q Consensus 105 iR~L~ek~-------~k~Eael-ra~e~l----k~EL~q~r~e~q~L~~~rqeL~---------aevq~l~~EL~r~kad 163 (312)
|+.++--- +-||.-- +.+|-| ..||+.++.|...|.+...--+ +--..+.+||.+.++-
T Consensus 329 ~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSv 408 (593)
T KOG4807|consen 329 IPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSV 408 (593)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 55554211 2233211 112222 2244444444444433222111 1123455677777777
Q ss_pred cccchhHH----HHHHHHHHHHHHHHHH
Q 021465 164 VKNLPDLH----AELDSLRQEHRRLRAT 187 (312)
Q Consensus 164 ~qql~alr----aELe~LrqElq~~Raa 187 (312)
++.+++|| .|++.++.|++.+-..
T Consensus 409 nsdveaLRrQyleelqsvqRELeVLSEQ 436 (593)
T KOG4807|consen 409 NSDVEALRRQYLEELQSVQRELEVLSEQ 436 (593)
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776 4566666666665443
No 107
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.92 E-value=2.1 Score=43.75 Aligned_cols=49 Identities=10% Similarity=0.172 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhh
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIR 95 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~ 95 (312)
=+++|+.--..+.+.|..|-----+-+-.|+|+-.++++-.+.|-....
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~r 267 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRR 267 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666655555555678889998888886666655443
No 108
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.90 E-value=0.2 Score=42.66 Aligned_cols=66 Identities=32% Similarity=0.404 Sum_probs=36.4
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH----HHHHHHHHHHHHHHHHHHHHH
Q 021465 155 EALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV----EQLQAMEKNLVGMAREMEKLH 220 (312)
Q Consensus 155 ~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ell----eq~qaMEknL~~marEvekLr 220 (312)
+||.+=-.+++.|..+|.++..++.++..+++..+.-+......- ++-+.+++.+..+.+.++.|.
T Consensus 49 ~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 49 RELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556677777777777777777777776555443332221 122444444444444444443
No 109
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.89 E-value=0.71 Score=47.72 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTSK 149 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~ae 149 (312)
+.|+.|.+....+++.|.+.+.+|-.+
T Consensus 333 ~kl~~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 333 EKLKSEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444444444444444333
No 110
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.88 E-value=1.3 Score=49.28 Aligned_cols=164 Identities=18% Similarity=0.276 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh--hHHHHHHHHHh---------hhhhHhh
Q 021465 51 KIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES--DSHIRVLLDKI---------AKMEADC 119 (312)
Q Consensus 51 ~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~--e~qiR~L~ek~---------~k~Eael 119 (312)
.|-.+|.|+..|-.+-++|-.+...=...|..+.+++++|.-....++... --.|+-|..|- .+..+..
T Consensus 175 ~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k 254 (1072)
T KOG0979|consen 175 ELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYK 254 (1072)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHH
Confidence 355677788888887777776555544455555555555544444443332 22445554333 3345667
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021465 120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVK----NLPDLHAELDSLRQEHRRLRATFEYEKGLN 195 (312)
Q Consensus 120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~q----ql~alraELe~LrqElq~~RaaiE~EKk~~ 195 (312)
.+.+.+|.++..+.-+++.+..-+.+|-.++..+..++...+.+.. .+-+.-..+..+.++++.+....|+-|+..
T Consensus 255 ~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~ 334 (1072)
T KOG0979|consen 255 QAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAA 334 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888889899888888888888777777777777666655554332 223333445566677777777777766666
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 021465 196 IDNVEQLQAMEKNLVGMAR 214 (312)
Q Consensus 196 ~elleq~qaMEknL~~mar 214 (312)
......+....+.+.....
T Consensus 335 ~~rq~~i~~~~k~i~~~q~ 353 (1072)
T KOG0979|consen 335 EKRQKRIEKAKKMILDAQA 353 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5555555444455444444
No 111
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.87 E-value=0.0022 Score=68.24 Aligned_cols=67 Identities=16% Similarity=0.341 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHH
Q 021465 72 SHITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQS 138 (312)
Q Consensus 72 th~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~ 138 (312)
.+..|+..|..+++|+.++.....+++.+- +.++.+|-.++..+-++.+...+||+||..+|..+.+
T Consensus 240 ~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r 309 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADR 309 (713)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 344455556666666666555444444322 3455556666666666667777788888777765554
No 112
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.87 E-value=1.9 Score=45.02 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH-----------------------HHHH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELD-----------------------SLRQ 179 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe-----------------------~Lrq 179 (312)
..++.++..+..++..+.....++...++.++++-..++. +|..++..+. .++.
T Consensus 379 sel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~---kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~ 455 (569)
T PRK04778 379 SELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEARE---KLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSD 455 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 3455666666677777777777777777777777666654 3333333332 3335
Q ss_pred HHHHHHHHHHHHHhhcHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 180 EHRRLRATFEYEKGLNIDNVE-QLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 180 Elq~~RaaiE~EKk~~~elle-q~qaMEknL~~marEvekLrAEIanae 227 (312)
++.++...++. ..-|.+-++ +....+..+..+..+...|......++
T Consensus 456 ~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE 503 (569)
T PRK04778 456 EIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTE 503 (569)
T ss_pred HHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666555 555666666 555666666666665555555555444
No 113
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.86 E-value=2.4 Score=46.66 Aligned_cols=85 Identities=19% Similarity=0.239 Sum_probs=37.6
Q ss_pred hhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHH
Q 021465 95 RNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAEL 174 (312)
Q Consensus 95 ~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraEL 174 (312)
..++.++-.-.|..-|...++|+.-.+.+.++.+..++---+.++..+...+.++.....+-++..+. ++..+..++
T Consensus 434 t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~---El~~l~~e~ 510 (980)
T KOG0980|consen 434 TELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQ---ELALLLIEL 510 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHH
Confidence 33444443333444444444455444444444444444444444444444444444444444444442 334444444
Q ss_pred HHHHHHHH
Q 021465 175 DSLRQEHR 182 (312)
Q Consensus 175 e~LrqElq 182 (312)
+.++..+.
T Consensus 511 ~~lq~~~~ 518 (980)
T KOG0980|consen 511 EELQRTLS 518 (980)
T ss_pred HHHHHHhh
Confidence 44443333
No 114
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.80 E-value=3.7 Score=44.58 Aligned_cols=35 Identities=9% Similarity=0.174 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 128 DLQQAHIEAQSLARARQELTSKIQQASEALHKARL 162 (312)
Q Consensus 128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka 162 (312)
||++.-.-+||.++.=+.-..++..++.||.+...
T Consensus 101 elEeENislQKqvs~Lk~sQvefE~~Khei~rl~E 135 (717)
T PF09730_consen 101 ELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEE 135 (717)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44444444555555444445555555555555554
No 115
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.78 E-value=2.7 Score=48.46 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHhhhhhh
Q 021465 48 LEDKIAVQAAEIERLARDN 66 (312)
Q Consensus 48 lE~~l~~q~~Ei~~L~~dN 66 (312)
|+++|+.-..+|..|-..-
T Consensus 747 l~~~IaeL~~~i~~l~~~l 765 (1353)
T TIGR02680 747 LDARLAAVDDELAELAREL 765 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544333
No 116
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.77 E-value=0.16 Score=45.85 Aligned_cols=112 Identities=21% Similarity=0.249 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 74 ITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQA 153 (312)
Q Consensus 74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l 153 (312)
..+.+.+..+++||..+.- .+.+...++..+.++..++++ ++.+....+..|......|..++..+
T Consensus 70 ~~le~~~~~l~~ELael~r----~~~el~~~L~~~~~~l~~l~~----------~~~~~~~~l~~l~~~~~~L~~~~~~l 135 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYR----SKGELAQQLVELNDELQELEK----------ELSEKERRLAELEAELAQLEEKIKDL 135 (194)
T ss_dssp ----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccc----ccccccccccccccccchhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666655532 345555566666666655554 44444445555555555555666666
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 154 SEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 154 ~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
..+|..... .+..++.|+..|+=++-.+...+..-++.|.++++..
T Consensus 136 ~~~l~ek~k---~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 136 EEELKEKNK---ANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655553 4566667777777777777777777777888888776
No 117
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.73 E-value=1.4 Score=45.47 Aligned_cols=145 Identities=17% Similarity=0.274 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 74 ITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKI 150 (312)
Q Consensus 74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aev 150 (312)
++|...|..++|..++-...|.+++-.. |..+.+|-=|+.|=+--+--+..||..++.+--|-=++.-.+.++-..+
T Consensus 313 maLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~l 392 (527)
T PF15066_consen 313 MALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTL 392 (527)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHH
Confidence 4444444444444444444444444333 4455555555554444444444555555444333333333333333333
Q ss_pred HHHH-------HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 151 QQAS-------EALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHA 221 (312)
Q Consensus 151 q~l~-------~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrA 221 (312)
|.|. +.|+..+. .-+.|.-++..++..+.+++.++-.|...+.+-+.|--.|++.|-.-..||++|..
T Consensus 393 qnLqe~la~tqk~LqEsr~---eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~ 467 (527)
T PF15066_consen 393 QNLQEALANTQKHLQESRN---EKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQ 467 (527)
T ss_pred HHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3333 23333333 23667778888888888888887778777788888888888888877777766543
No 118
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.73 E-value=1.1 Score=48.73 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccchhHHHHHHHHHHHHHHHHHHHHH
Q 021465 125 LKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEV----KNLPDLHAELDSLRQEHRRLRATFEY 190 (312)
Q Consensus 125 lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~----qql~alraELe~LrqElq~~RaaiE~ 190 (312)
++....|++.|+.-|.-.-+.|..+++..+-++...+.++ ++.+-.+.|++.|+++|+..+..+-+
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQK 504 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666666666666666666666555554444322 23344445556666666555555443
No 119
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=95.73 E-value=0.36 Score=51.70 Aligned_cols=53 Identities=28% Similarity=0.452 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 021465 128 DLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQE 180 (312)
Q Consensus 128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqE 180 (312)
||-++.-++-+|.+.|.-|.+++-.|+.++++.+...+.+|.++++++.|+|-
T Consensus 867 Elthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qR 919 (961)
T KOG4673|consen 867 ELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQR 919 (961)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66778899999999999999999999999999999999999999999999853
No 120
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=95.69 E-value=1.3 Score=38.56 Aligned_cols=22 Identities=14% Similarity=0.234 Sum_probs=11.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 021465 167 LPDLHAELDSLRQEHRRLRATF 188 (312)
Q Consensus 167 l~alraELe~LrqElq~~Raai 188 (312)
.+.+..-|..|-.|+..+...+
T Consensus 75 ~E~l~rriq~LEeele~ae~~L 96 (143)
T PF12718_consen 75 AEQLNRRIQLLEEELEEAEKKL 96 (143)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 3445555555555555555543
No 121
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.67 E-value=1.4 Score=48.32 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=87.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhh---hhhchhhHHHHHHHHHhhhhhHhhhhhHH----HHHHHHHHHHHH
Q 021465 64 RDNHRLAASHITMREDLAAAQQEIPRIKAHIR---NIHTESDSHIRVLLDKIAKMEADCKAGER----LKKDLQQAHIEA 136 (312)
Q Consensus 64 ~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~---~~~ae~e~qiR~L~ek~~k~Eaelra~e~----lk~EL~q~r~e~ 136 (312)
.|-+.|-.+|.. +++-...-+|-++++...- +=.-+++.|||.|--+...+|.++..++. +..++.+.+.++
T Consensus 65 vdkaglneSvii-e~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etel 143 (1265)
T KOG0976|consen 65 VDKAGLNESVII-EQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEI 143 (1265)
T ss_pred HHHhhccchhhh-hhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444432 2333334445555554433 23345578999999999999999876654 455566666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH--HHHHHHHHHHHH
Q 021465 137 QSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL--QAMEKNLVGMAR 214 (312)
Q Consensus 137 q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~--qaMEknL~~mar 214 (312)
.++.+.-.+|..++-+-+.||...-.|+ -.--.+|..++-+++.+=+..-.|++.+++.+++. ...+++-+++..
T Consensus 144 E~~~srlh~le~eLsAk~~eIf~~~~~L---~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~sle~ 220 (1265)
T KOG0976|consen 144 ENLNSRLHKLEDELSAKAHDIFMIGEDL---HDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKSLEL 220 (1265)
T ss_pred HhhHHHHHHHHHHHhhhhHHHHHHHHHH---hhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 6665554444444444444443333211 11114555556666666666666777777777776 333444444433
Q ss_pred -HHHHHHHHHHHH
Q 021465 215 -EMEKLHAEVVNA 226 (312)
Q Consensus 215 -EvekLrAEIana 226 (312)
+.+.++.+|..-
T Consensus 221 ~~~q~~tq~vl~e 233 (1265)
T KOG0976|consen 221 HKDQENTQKVLKE 233 (1265)
T ss_pred HHHHHHHHHHHHH
Confidence 555555555543
No 122
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.66 E-value=0.93 Score=46.80 Aligned_cols=79 Identities=19% Similarity=0.157 Sum_probs=34.3
Q ss_pred HHHHHHhhhhhHhhh-hhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcccchhHHHHHHHHHHH
Q 021465 106 RVLLDKIAKMEADCK-AGERL-KKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL---EVKNLPDLHAELDSLRQE 180 (312)
Q Consensus 106 R~L~ek~~k~Eaelr-a~e~l-k~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka---d~qql~alraELe~LrqE 180 (312)
+.|-+|..-+|..+. ....+ ...+.-+ ..+-++...+++|.....+++.-+.-.+. =.+++..++.+.+..++|
T Consensus 158 ~sL~ekl~lld~al~~~~~~~~~~~~~fl-~rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~e 236 (511)
T PF09787_consen 158 RSLQEKLSLLDEALKREDGNAITAVVEFL-KRTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAE 236 (511)
T ss_pred hhHHHHHHHHHHHHHhcCccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 666677666664432 11111 1122212 22233445566666655544443322220 012344445555555555
Q ss_pred HHHHH
Q 021465 181 HRRLR 185 (312)
Q Consensus 181 lq~~R 185 (312)
+...+
T Consensus 237 l~~Yk 241 (511)
T PF09787_consen 237 LQQYK 241 (511)
T ss_pred HHHHH
Confidence 55554
No 123
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.66 E-value=0.71 Score=39.73 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=15.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465 61 RLARDNHRLAASHITMREDLAAAQQEIPRIKA 92 (312)
Q Consensus 61 ~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~ 92 (312)
.|+..-++-....+.|...+.....|+.+|..
T Consensus 42 ~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~ 73 (151)
T PF11559_consen 42 DLLQQRDRDMEQREDLSDKLRRLRSDIERLQN 73 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444444444555555555555555555544
No 124
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.63 E-value=0.31 Score=47.87 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=74.4
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhh-HHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHH
Q 021465 62 LARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESD-SHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLA 140 (312)
Q Consensus 62 L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e-~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~ 140 (312)
--..|..|......|+|.|..+|-|+.-|+..+.+.+...+ ...|... ..=|..+.-.|.++....|+..|++.+.
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~---~ere~lV~qLEk~~~q~~qLe~d~qs~l 153 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP---HEREDLVEQLEKLREQIEQLERDLQSLL 153 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999998888776651 1112111 1113445666788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021465 141 RARQELTSKIQQASEALHKARL 162 (312)
Q Consensus 141 ~~rqeL~aevq~l~~EL~r~ka 162 (312)
-..++|..+-...+....|..-
T Consensus 154 DEkeEl~~ERD~yk~K~~RLN~ 175 (319)
T PF09789_consen 154 DEKEELVTERDAYKCKAHRLNH 175 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777777764
No 125
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.63 E-value=1 Score=48.63 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHH----hHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 146 LTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNID----NVEQLQAMEKNLVGMAREMEKLHA 221 (312)
Q Consensus 146 L~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~e----lleq~qaMEknL~~marEvekLrA 221 (312)
|+.-=..+++||.+.+. +|..+++-|+.++..+...+..++..++.... --.|.+.+...|..+..+|+.+-.
T Consensus 630 LS~AEr~~~~EL~~~~~---~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~ 706 (717)
T PF10168_consen 630 LSEAEREFKKELERMKD---QLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVK 706 (717)
T ss_pred CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333556666666665 45556666666666666555545532222111 224557778888888888888888
Q ss_pred HHHHHHHh
Q 021465 222 EVVNAEMR 229 (312)
Q Consensus 222 EIanaekr 229 (312)
+|.+..+.
T Consensus 707 ~ik~i~~~ 714 (717)
T PF10168_consen 707 QIKNIKKI 714 (717)
T ss_pred HHHHHHHh
Confidence 88776653
No 126
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.61 E-value=4 Score=43.95 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=48.6
Q ss_pred HhcccchhHHHHHHHHHHHHHHHHHHH------HHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 162 LEVKNLPDLHAELDSLRQEHRRLRATF------EYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 162 ad~qql~alraELe~LrqElq~~Raai------E~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae 227 (312)
..+|.++.+...+...+.|+..+|..- ..|++.....+.+...|+-.+..+.-|.+.|.+++.+++
T Consensus 248 dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE 319 (716)
T KOG4593|consen 248 DQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWE 319 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 345666777777777777777665542 236677777777788888888888889999988888776
No 127
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.56 E-value=1.2 Score=47.54 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=34.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh----hHHHHHHHHHhhhhhHh
Q 021465 65 DNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES----DSHIRVLLDKIAKMEAD 118 (312)
Q Consensus 65 dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~----e~qiR~L~ek~~k~Eae 118 (312)
-.+-|......++++|..++.+|+..+....-+-.+. +.++.+|..+.....++
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~ 252 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARAN 252 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHH
Confidence 3466788888899999999988888877544433222 24555555544444433
No 128
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=95.55 E-value=5.4 Score=44.80 Aligned_cols=49 Identities=10% Similarity=0.253 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhh
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIR 95 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~ 95 (312)
..+..+.....+++.+...-..+...+..+.+.+...+..+..+...+.
T Consensus 527 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (1047)
T PRK10246 527 VNQSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQ 575 (1047)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555556555444444444444444444444444444444333
No 129
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.55 E-value=0.57 Score=43.74 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDS 176 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~ 176 (312)
+.|.+++.+++.++..|....+.|...+..+.++|+.++.++.++...+.+|..
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666777777777777777777777777777666555555555544
No 130
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.54 E-value=2.4 Score=40.75 Aligned_cols=155 Identities=18% Similarity=0.278 Sum_probs=98.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHH-H
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGER-L 125 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~-l 125 (312)
.+.+.+..+..+|..+-.+=+-+-.....|-..+..++..++-+..-+..+++ .|-.|-.++..++..++.... |
T Consensus 28 ~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~----eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 28 LLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKA----EIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888887777776655555555555544444444444444443333333 233344444444444432222 2
Q ss_pred HHHHHHH------------------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Q 021465 126 KKDLQQA------------------------H-IEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQE 180 (312)
Q Consensus 126 k~EL~q~------------------------r-~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqE 180 (312)
+..+.-+ | .=+..++.+|+.++...+.-.++|...+. .+..-...|..+.+|
T Consensus 104 ~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~---~l~~~~e~l~al~~e 180 (265)
T COG3883 104 KKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQA---ALEDKLETLVALQNE 180 (265)
T ss_pred HHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 2222111 1 33556788999999999999999998886 777888888889999
Q ss_pred HHHHHHHHHHHHhhcHHhHHHHHHHHHH
Q 021465 181 HRRLRATFEYEKGLNIDNVEQLQAMEKN 208 (312)
Q Consensus 181 lq~~RaaiE~EKk~~~elleq~qaMEkn 208 (312)
++..+..++..+.....++.+++.-+.+
T Consensus 181 ~e~~~~~L~~qk~e~~~l~~~~aa~~a~ 208 (265)
T COG3883 181 LETQLNSLNSQKAEKNALIAALAAKEAS 208 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888887544433
No 131
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.52 E-value=4.6 Score=44.46 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 174 LDSLRQEHRRLRATFEYEKGLNID---NVEQLQAMEKNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 174 Le~LrqElq~~RaaiE~EKk~~~e---lleq~qaMEknL~~marEvekLrAEIan 225 (312)
++.+..++...+..++..++.... .+++++....++.....+++++...+..
T Consensus 690 ~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 744 (908)
T COG0419 690 LEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALEL 744 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666666666666554444444 6666666666666666666666644443
No 132
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=95.51 E-value=0.29 Score=52.58 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAA 83 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aa 83 (312)
=||+.|+-+.++++-+..-|.-|-....-++++|..+
T Consensus 95 klE~~Lankda~lrq~eekn~slqerLelaE~~l~qs 131 (916)
T KOG0249|consen 95 KLENELANKDADLRQNEEKNRSLQERLELAEPKLQQS 131 (916)
T ss_pred HHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhH
Confidence 7888888888888877777766555555555555443
No 133
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=95.51 E-value=0.42 Score=47.34 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 021465 134 IEAQSLARARQELTSKIQQASEALHKARLEVKNL 167 (312)
Q Consensus 134 ~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql 167 (312)
.|.+.|..+.+.|.+++-..+.=+.+.+.+.+.+
T Consensus 99 ~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~L 132 (401)
T PF06785_consen 99 QESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHL 132 (401)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3333344444444444444433334444433333
No 134
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.50 E-value=2.7 Score=41.00 Aligned_cols=69 Identities=23% Similarity=0.444 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---hcccchhHHHHHHHHHHHHHHHHHHH
Q 021465 120 KAGERLKKDLQQAHIEAQSL---ARARQELTSKIQQASEALHKARL---EVKNLPDLHAELDSLRQEHRRLRATF 188 (312)
Q Consensus 120 ra~e~lk~EL~q~r~e~q~L---~~~rqeL~aevq~l~~EL~r~ka---d~qql~alraELe~LrqElq~~Raai 188 (312)
+...+++.+++.+.-..+.. .+.-.+|+.++..++++|...+. .+.++..+.++++.++.+....+..|
T Consensus 107 ~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki 181 (294)
T COG1340 107 RSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKI 181 (294)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666554222221 12234566666666666655441 22244555555555555544444443
No 135
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.32 E-value=2.3 Score=38.99 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465 203 QAMEKNLVGMAREMEKLHAEVVNAEMR 229 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIanaekr 229 (312)
-.+++.|..|...+|+-.++|...-..
T Consensus 146 ~lLEkKl~~l~~~lE~keaqL~evl~~ 172 (201)
T PF13851_consen 146 LLLEKKLQALSEQLEKKEAQLNEVLAA 172 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888888887765433
No 136
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=95.30 E-value=2.4 Score=39.12 Aligned_cols=34 Identities=12% Similarity=0.379 Sum_probs=20.5
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHH-HHHHhHHHHH
Q 021465 59 IERLARDNHRLAASHITMREDLAA-AQQEIPRIKA 92 (312)
Q Consensus 59 i~~L~~dNqrLa~th~~L~qeL~a-aq~Elq~L~~ 92 (312)
+..|+.+..+++..|..+-+.|.. .-..|..+..
T Consensus 62 ~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~ 96 (236)
T cd07651 62 LDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFAS 96 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777776653 4445555433
No 137
>PF13514 AAA_27: AAA domain
Probab=95.25 E-value=2 Score=48.19 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh-----hHHHHHHHHHhhhhhHhhhh
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES-----DSHIRVLLDKIAKMEADCKA 121 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~-----e~qiR~L~ek~~k~Eaelra 121 (312)
.+-.++.....+|+.....+ .+...+++++..++++++.|+..+..++.+. -.++..++.+...+++.|.+
T Consensus 154 ~~l~~l~e~~~~l~~~~~~~----~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~ 229 (1111)
T PF13514_consen 154 QALKELKELERELREAEVRA----AEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAE 229 (1111)
T ss_pred HHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 34444455555555544443 3444455555555555555555444444443 22334445555555544442
Q ss_pred h-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 122 G-------ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALH 158 (312)
Q Consensus 122 ~-------e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~ 158 (312)
. +.....+.++..++..+......+..++..+..++.
T Consensus 230 l~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 273 (1111)
T PF13514_consen 230 LGEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELD 273 (1111)
T ss_pred cCCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 122334444444444444444444444444444443
No 138
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.18 E-value=2 Score=42.69 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465 71 ASHITMREDLAAAQQEIPRIKAHIRNIHTES 101 (312)
Q Consensus 71 ~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~ 101 (312)
.+..-|.++|..++++|......+.+.+.++
T Consensus 171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 171 KAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444445555544444444444444433
No 139
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.11 E-value=2.7 Score=38.70 Aligned_cols=43 Identities=26% Similarity=0.333 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHH
Q 021465 48 LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRI 90 (312)
Q Consensus 48 lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L 90 (312)
|.+.-..-++.|..+--.|.+|......|++.+-++|+=++.-
T Consensus 20 L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a 62 (193)
T PF14662_consen 20 LADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA 62 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777788888888888888777776544443
No 140
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=95.10 E-value=4.9 Score=41.66 Aligned_cols=91 Identities=14% Similarity=0.193 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccchhHHHHHHHHHHHHHHHHHHHHH----HHhhcHHhHHHHHHHH
Q 021465 134 IEAQSLARARQELTSKIQQASEALHKARLEV---KNLPDLHAELDSLRQEHRRLRATFEY----EKGLNIDNVEQLQAME 206 (312)
Q Consensus 134 ~e~q~L~~~rqeL~aevq~l~~EL~r~kad~---qql~alraELe~LrqElq~~RaaiE~----EKk~~~elleq~qaME 206 (312)
..++.|...++.|..+.+.|-.++=..+... +.-..+..=|.-++..|..-+..++. +.+.+..+-++++.+.
T Consensus 99 ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~ 178 (475)
T PRK10361 99 DKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQ 178 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566677777777777777774433210 11123333456666777777666554 5666777777776666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021465 207 KNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 207 knL~~marEvekLrAEIa 224 (312)
..-..|..|..+|..-|.
T Consensus 179 ~~n~~i~~ea~nLt~ALk 196 (475)
T PRK10361 179 QLNAQMAQEAINLTRALK 196 (475)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 666677777777755554
No 141
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=95.04 E-value=0.0062 Score=64.87 Aligned_cols=91 Identities=15% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 75 TMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKA-GERLKKDLQQAHIEAQSLARARQELTSKIQQA 153 (312)
Q Consensus 75 ~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra-~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l 153 (312)
.|.+....++.++..+......++...|..++.|.........+.+. .-.++.++.+++..+..+...-+.|..+++.+
T Consensus 118 ~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l~~e~~~l 197 (722)
T PF05557_consen 118 QLEEREEELEEELEEAEEELEQLKRKLEEEKRRLQREKEQLLEEAREEISSLKNELSELERQAENAESQIQSLESELEEL 197 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555554444455555555555552211222222221 12355566666655555555555566666666
Q ss_pred HHHHHHHHHhcc
Q 021465 154 SEALHKARLEVK 165 (312)
Q Consensus 154 ~~EL~r~kad~q 165 (312)
++.|...+.+++
T Consensus 198 ~~~le~~~~~~~ 209 (722)
T PF05557_consen 198 KEQLEELQSELQ 209 (722)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 666655554433
No 142
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=95.04 E-value=2.3 Score=37.58 Aligned_cols=60 Identities=25% Similarity=0.255 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL-----QAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 168 ~alraELe~LrqElq~~RaaiE~EKk~~~elleq~-----qaMEknL~~marEvekLrAEIanae 227 (312)
......+..++.++..++...+..++.+.++-.+. -..-.+++....+++.|+..|.+++
T Consensus 101 ~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~ 165 (177)
T PF13870_consen 101 KDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELE 165 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444433333 1122234444445555555554443
No 143
>PRK12704 phosphodiesterase; Provisional
Probab=95.02 E-value=2 Score=44.70 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=20.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
+|.....+|+..+++++..+..++..+......|++.
T Consensus 111 eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~ 147 (520)
T PRK12704 111 ELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666666555555555544455544
No 144
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=1.1 Score=48.96 Aligned_cols=146 Identities=20% Similarity=0.218 Sum_probs=75.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHH
Q 021465 53 AVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQA 132 (312)
Q Consensus 53 ~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~ 132 (312)
..|..|+.+++.+|++|-...+-|..+|.--...++.+.+...+.......-.-.+-++-.-+| +++..-..+..+.+.
T Consensus 733 ~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~E-l~~~l~e~~~~l~~~ 811 (970)
T KOG0946|consen 733 KTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIE-LLKNLSEESTRLQEL 811 (970)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHH-HHHhhhhhhhHHHHH
Confidence 3445555555555555555555555555555555556655555444433222222222221111 111122234456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 133 HIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 133 r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
..++++|..+-++++....+.-..+..... .-..+-.+.....+++..+...|..=+++-.++.|.+
T Consensus 812 q~e~~~~keq~~t~~~~tsa~a~~le~m~~---~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~ 878 (970)
T KOG0946|consen 812 QSELTQLKEQIQTLLERTSAAADSLESMGS---TEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKI 878 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHhhc---cccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhh
Confidence 778888888888888887777777766553 2233334444555555555555544444444444443
No 145
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=94.98 E-value=3.9 Score=39.89 Aligned_cols=103 Identities=17% Similarity=0.275 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLK 126 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk 126 (312)
-.|++|+.-+.-...|+.++.++...+..+++....++.|...+..-+ .-......|||...|..+.--
T Consensus 19 ~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~-----------~k~~~~k~KLE~LCRELQk~N 87 (309)
T PF09728_consen 19 SPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSEL-----------SKAILAKSKLESLCRELQKQN 87 (309)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 448899988888888999999999999999999988888888887732 344455567777766655544
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 127 KDLQQA-HIEAQSLARARQELTSKIQQASEALHKA 160 (312)
Q Consensus 127 ~EL~q~-r~e~q~L~~~rqeL~aevq~l~~EL~r~ 160 (312)
..|... ..-+..-...|.++++..+..-.+|...
T Consensus 88 k~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~~ 122 (309)
T PF09728_consen 88 KKLKEESKRRAREEEEKRKELSEKFQATLKDIQAQ 122 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444322 3345556677888888888888888553
No 146
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=94.96 E-value=2.4 Score=37.44 Aligned_cols=161 Identities=17% Similarity=0.242 Sum_probs=75.8
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHH-HHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHH
Q 021465 56 AAEIERLARDNHRLAASHITMREDLAAAQQEIPRIK-AHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHI 134 (312)
Q Consensus 56 ~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~-~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~ 134 (312)
..+|..+-..|-.|-.+...++..|....+==..|. .+.-.++.|.......+.+|...+-. ||. ....
T Consensus 5 ~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~-------Lk~---~~~~ 74 (177)
T PF13870_consen 5 RNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLK-------LKK---KIGK 74 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---HHHH
Confidence 445555555555555555444444433322111111 12234455554444445555433321 111 1113
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHh-----hcHHhHHHHHHHH
Q 021465 135 EAQSLARARQE---LTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKG-----LNIDNVEQLQAME 206 (312)
Q Consensus 135 e~q~L~~~rqe---L~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk-----~~~elleq~qaME 206 (312)
.++.|.+.+.. +..+...++.+|...+. .+..++.++..++.+...++.....-+. .+..++.......
T Consensus 75 ~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~---~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~ 151 (177)
T PF13870_consen 75 TVQILTHVKEKLHFLSEELERLKQELKDREE---ELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 33333333332 33444555555555443 4555556666666666666555333211 2355555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 021465 207 KNLVGMAREMEKLHAEVVNAEMR 229 (312)
Q Consensus 207 knL~~marEvekLrAEIanaekr 229 (312)
..+..+...+..|+..+..++.+
T Consensus 152 ~~~~~l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 152 EEVEELRKEIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666677777666666544
No 147
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.92 E-value=0.97 Score=46.76 Aligned_cols=145 Identities=13% Similarity=0.204 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHH-HhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 021465 74 ITMREDLAAAQQ-EIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELT----- 147 (312)
Q Consensus 74 ~~L~qeL~aaq~-Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~----- 147 (312)
..+++||.+.=. -.+.+...|.+++.+. +.|++++...+..=..++-|+..-..++.|.-+|.+.-..|-
T Consensus 252 ~~~e~Elk~~f~~~~~~i~~~i~~lk~~n----~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~ 327 (622)
T COG5185 252 EPSEQELKLGFEKFVHIINTDIANLKTQN----DNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQE 327 (622)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 345566655433 3455666666666655 455555544443333444444444444455555555444444
Q ss_pred --HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 148 --SKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 148 --aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIan 225 (312)
..+..|+.+++.... +|.+|++.++.|+..+...+-.++.-++- ..+...+.++|+.|.-++++|+.++-.
T Consensus 328 ~~g~l~kl~~eie~kEe---ei~~L~~~~d~L~~q~~kq~Is~e~fe~m----n~Ere~L~reL~~i~~~~~~L~k~V~~ 400 (622)
T COG5185 328 WPGKLEKLKSEIELKEE---EIKALQSNIDELHKQLRKQGISTEQFELM----NQEREKLTRELDKINIQSDKLTKSVKS 400 (622)
T ss_pred cchHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHhcCCCHHHHHHH----HHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 444445555555444 45555555555555554444433321111 112255677788888888888887775
Q ss_pred HHHh
Q 021465 226 AEMR 229 (312)
Q Consensus 226 aekr 229 (312)
.+-.
T Consensus 401 ~~le 404 (622)
T COG5185 401 RKLE 404 (622)
T ss_pred HHHH
Confidence 5533
No 148
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.91 E-value=2.3 Score=48.31 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=23.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465 196 IDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGH 231 (312)
Q Consensus 196 ~elleq~qaMEknL~~marEvekLrAEIanaekra~ 231 (312)
++.++.++.|+..+.+-.+.++...++|+..++|.+
T Consensus 1706 ~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1706 NEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVE 1741 (1758)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHH
Confidence 444455566666666666778888888888877754
No 149
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.90 E-value=4.3 Score=43.90 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHh
Q 021465 72 SHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEAD 118 (312)
Q Consensus 72 th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eae 118 (312)
.+-+||.+.-.++.||+.- ...+.-+|++-+|+.|+..+-||-..
T Consensus 424 ERDalr~e~kslk~ela~~--l~~DeLaEkdE~I~~lm~EGEkLSK~ 468 (961)
T KOG4673|consen 424 ERDALRREQKSLKKELAAA--LLKDELAEKDEIINQLMAEGEKLSKK 468 (961)
T ss_pred hHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4556677777777776543 22367788999999999888776543
No 150
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=94.89 E-value=3.9 Score=41.30 Aligned_cols=65 Identities=8% Similarity=0.242 Sum_probs=41.2
Q ss_pred cchhHHHHHHHHHHHHHHH------------HHHHHH-HHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021465 166 NLPDLHAELDSLRQEHRRL------------RATFEY-EKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRG 230 (312)
Q Consensus 166 ql~alraELe~LrqElq~~------------RaaiE~-EKk~~~elleq~qaMEknL~~marEvekLrAEIanaekra 230 (312)
++..++++|..++.++..+ +..++. ..+...+..+++...+.++.....++++++..+.+..-++
T Consensus 244 ~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~A 321 (457)
T TIGR01000 244 QIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQKGVIKA 321 (457)
T ss_pred HHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEC
Confidence 4455555555555555543 333322 2233345667778889999999999999999988765443
No 151
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.85 E-value=1.7 Score=40.63 Aligned_cols=106 Identities=17% Similarity=0.210 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHH-
Q 021465 122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVE- 200 (312)
Q Consensus 122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elle- 200 (312)
+..++.+|.+++..+-++.+..+.|-.++..+..+.++.+. +-.-+|.+.-+.|=.+.....+.+|...+.+...+.
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~--~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~ 110 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE--KAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQ 110 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566655555666666666666666666655554 334455555566666666666665555555444444
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465 201 ---QLQAMEKNLVGMAREMEKLHAEVVNAEMR 229 (312)
Q Consensus 201 ---q~qaMEknL~~marEvekLrAEIanaekr 229 (312)
+...|++++..+...|.++++.......+
T Consensus 111 ~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 111 AEEQVEKLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778888888888888888877765544
No 152
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=94.85 E-value=0.76 Score=49.29 Aligned_cols=109 Identities=15% Similarity=0.217 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHhhhhhchh-----hHHHHHHHHHhhhhhHhhhhhHHHHHHHHHH----HHHHHHHHHH
Q 021465 72 SHITMREDLAAAQQEIPRIKAHIRNIHTES-----DSHIRVLLDKIAKMEADCKAGERLKKDLQQA----HIEAQSLARA 142 (312)
Q Consensus 72 th~~L~qeL~aaq~Elq~L~~~~~~~~ae~-----e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~----r~e~q~L~~~ 142 (312)
+..=|.++|..++++|......+.+.+.++ +.+...+.+++..+++.+...+...+++.+. +-.+++|..
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~v~~l~~- 346 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLE- 346 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHH-
Confidence 344444444444444444444444444443 2233445555555555444433333333221 122222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465 143 RQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT 187 (312)
Q Consensus 143 rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa 187 (312)
+...+++++++.+..+.+++....++..|+.+.+..|.-
T Consensus 347 ------~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 347 ------KRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred ------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555544443
No 153
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=94.84 E-value=3.4 Score=42.89 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHhhcHHhHHHH----HHHHHHHHHHH
Q 021465 170 LHAELDSLRQEH-----RRLRATFEYEKGLNIDNVEQL----QAMEKNLVGMA 213 (312)
Q Consensus 170 lraELe~LrqEl-----q~~RaaiE~EKk~~~elleq~----qaMEknL~~ma 213 (312)
++.++...+.|+ ...+..++.|+..+...|+++ +.+++-+....
T Consensus 346 l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~ 398 (582)
T PF09731_consen 346 LKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARS 398 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 334666777887777777666 55555554444
No 154
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=94.84 E-value=3.9 Score=39.21 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHh
Q 021465 72 SHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKI 112 (312)
Q Consensus 72 th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~ 112 (312)
++..|++-..-++.-...|...|.+...-.-..+|.|..+-
T Consensus 7 sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy 47 (258)
T PF15397_consen 7 SLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQY 47 (258)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHH
Confidence 44455555555555555555555555555555666665543
No 155
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=94.81 E-value=4.2 Score=41.46 Aligned_cols=104 Identities=22% Similarity=0.241 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhh-----hhHHHHHHHHHHHHHHhHHHHHHh------------------hhhhchhhH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLA-----ASHITMREDLAAAQQEIPRIKAHI------------------RNIHTESDS 103 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa-----~th~~L~qeL~aaq~Elq~L~~~~------------------~~~~ae~e~ 103 (312)
.+|+---.-.+|+++|-.+..||- +|..+++-=-.+-++||.|=..-- .+++-|-+.
T Consensus 353 kiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeV 432 (593)
T KOG4807|consen 353 KIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEV 432 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHH
Confidence 777754445578888888887763 444444333333333333322222 223333333
Q ss_pred HHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 104 HIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKI 150 (312)
Q Consensus 104 qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aev 150 (312)
-.-.-..|....-...++.|+-++-|.|-+.|-|.|.+..|+|-..+
T Consensus 433 LSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRL 479 (593)
T KOG4807|consen 433 LSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRL 479 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 33334456665566677888888888888899999999988875543
No 156
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=2.1 Score=45.45 Aligned_cols=90 Identities=16% Similarity=0.273 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhc--HHhH-HHHHH
Q 021465 128 DLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLN--IDNV-EQLQA 204 (312)
Q Consensus 128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~--~ell-eq~qa 204 (312)
++.+..-++.++....+.|..+...|..+|...+ ++|+.|+.++.+.+..++.+...+ .+.+ .....
T Consensus 416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k----------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~ 485 (652)
T COG2433 416 EITVYEKRIKKLEETVERLEEENSELKRELEELK----------REIEKLESELERFRREVRDKVRKDREIRARDRRIER 485 (652)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344445555555555555555555555554444 666666666666666654333222 2222 33388
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021465 205 MEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 205 MEknL~~marEvekLrAEIanae 227 (312)
++++|.+-...++.|+.+++...
T Consensus 486 L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 486 LEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999988776
No 157
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.73 E-value=3.3 Score=38.76 Aligned_cols=44 Identities=7% Similarity=0.223 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhH
Q 021465 74 ITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEA 117 (312)
Q Consensus 74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Ea 117 (312)
..|.|.|-.++.+|..++..+..+.+.+ +.++..+.....|+|.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888888877777777666 5555555566666553
No 158
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.65 E-value=3.7 Score=38.08 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 021465 122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLR 178 (312)
Q Consensus 122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~Lr 178 (312)
+..+-.|..|+.+|+.++...=-+|...+..++.-+...+. .=+.|+..++...
T Consensus 71 i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~---NEE~Lkk~~~ey~ 124 (207)
T PF05010_consen 71 IQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKK---NEETLKKCIEEYE 124 (207)
T ss_pred HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHH
Confidence 34555666777777777777777777777777777666553 3344444443333
No 159
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.61 E-value=3 Score=43.43 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=16.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
+|.....+|+...++++.....++.........|+.+
T Consensus 105 ~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~ 141 (514)
T TIGR03319 105 NLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI 141 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555444444444333333344443
No 160
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.61 E-value=0.0094 Score=63.47 Aligned_cols=170 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhh---------HHHHHHHHHhhhhhH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESD---------SHIRVLLDKIAKMEA 117 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e---------~qiR~L~ek~~k~Ea 117 (312)
.+..+++.-...+++|-.++.++-....-++.++...+.||..|+..+..+.++.+ --+|+-.+|..|+|+
T Consensus 236 ~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~ 315 (713)
T PF05622_consen 236 HLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLEN 315 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 44455555566677777777776665555555555555555555444443333321 134555677777776
Q ss_pred hhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021465 118 DCKAGERLKKDLQ---QAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGL 194 (312)
Q Consensus 118 elra~e~lk~EL~---q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~ 194 (312)
++ +.+|+.|+ .++..++.|......|+.....+-.+|.+.. +++..++.+++++..+...+..+.+.
T Consensus 316 ~v---e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~-------~~~~qle~~k~qi~eLe~~l~~~~~~ 385 (713)
T PF05622_consen 316 EV---EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKAR-------ALKSQLEEYKKQIQELEQKLSEESRR 385 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 44554444 4466666666666666666666666665544 46666667777776666666655555
Q ss_pred cHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 195 NIDNVEQLQAMEKNLVGMAREMEKLHAEVVNA 226 (312)
Q Consensus 195 ~~elleq~qaMEknL~~marEvekLrAEIana 226 (312)
...+..++..++..+.++.++-+.|..++...
T Consensus 386 ~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L 417 (713)
T PF05622_consen 386 ADKLEFENKQLEEKLEALEEEKERLQEERDSL 417 (713)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666666666666666655543
No 161
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=94.57 E-value=9.1 Score=42.18 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465 68 RLAASHITMREDLAAAQQEIPRIKAHIRNIHTES 101 (312)
Q Consensus 68 rLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~ 101 (312)
.+...+..+...+...+..+.+|......+....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~ 304 (908)
T COG0419 271 IREEELRELERLLEELEEKIERLEELEREIEELE 304 (908)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666555554444
No 162
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=94.56 E-value=0.0098 Score=63.38 Aligned_cols=62 Identities=32% Similarity=0.414 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHH---HH---HHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRAT---FE---YEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 166 ql~alraELe~LrqElq~~Raa---iE---~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae 227 (312)
.+..|.++...++.|+.++|.. ++ .|+......++.+..++.+|..+.-+.++|+.++..+.
T Consensus 258 ~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~ 325 (722)
T PF05557_consen 258 HIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWE 325 (722)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666777777664 22 34444555566666666777777777777777766544
No 163
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=94.53 E-value=4.7 Score=45.94 Aligned_cols=181 Identities=19% Similarity=0.248 Sum_probs=82.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhh---hhHHHHHHHHHHH---HHHhHH-HHHHhhhhhchhhHHHHHHHHHhhhhhHhh
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLA---ASHITMREDLAAA---QQEIPR-IKAHIRNIHTESDSHIRVLLDKIAKMEADC 119 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa---~th~~L~qeL~aa---q~Elq~-L~~~~~~~~ae~e~qiR~L~ek~~k~Eael 119 (312)
+||+-+.--..+++.|...++.++ ..+-.|++.+.-. ..||++ -.+....=..+.+.++.+..++..++++++
T Consensus 438 ~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~ 517 (1317)
T KOG0612|consen 438 ILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALV 517 (1317)
T ss_pred hcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 788777666677788877777777 3333344333222 222232 111112222334445566666666666665
Q ss_pred hhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHhcc----cchhHHHHH
Q 021465 120 KAGE----RLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKA-----------------RLEVK----NLPDLHAEL 174 (312)
Q Consensus 120 ra~e----~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~-----------------kad~q----ql~alraEL 174 (312)
|..+ -+++.....+-..+++.+.+++|.+....++-+++.. ...+- .+..+....
T Consensus 518 ~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k 597 (1317)
T KOG0612|consen 518 RQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESK 597 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHH
Confidence 4322 2233333333444444555555443333333222111 00000 111111112
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 175 DSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 175 e~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae 227 (312)
..+.++...++...+.++..+.+..+...+.+..+.++....+.+..+|.+++
T Consensus 598 ~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 598 SKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHH
Confidence 23334444455555555555555555555555555555555555555555444
No 164
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=94.51 E-value=2.1 Score=37.97 Aligned_cols=89 Identities=20% Similarity=0.326 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
+.+.+.|--+..+.++|...+++|-.-+.-++++++-.+ .-||....||..+...|....+.+.+-++..
T Consensus 52 ekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vR----------kkID~vNreLkpl~~~cqKKEkEykealea~ 121 (159)
T PF04949_consen 52 EKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVR----------KKIDSVNRELKPLGQSCQKKEKEYKEALEAF 121 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 566667777778888888888888888888888877766 4444444555555555444444444444333
Q ss_pred -------HHHHHHHHHHHHHHHHHHH
Q 021465 203 -------QAMEKNLVGMAREMEKLHA 221 (312)
Q Consensus 203 -------qaMEknL~~marEvekLrA 221 (312)
..+--.|.++..|++++|-
T Consensus 122 nEknkeK~~Lv~~L~eLv~eSE~~rm 147 (159)
T PF04949_consen 122 NEKNKEKAQLVTRLMELVSESERLRM 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777777763
No 165
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.43 E-value=6.4 Score=39.85 Aligned_cols=35 Identities=6% Similarity=0.220 Sum_probs=26.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465 67 HRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES 101 (312)
Q Consensus 67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~ 101 (312)
+....+..-|++++..++++|......+.+.+.++
T Consensus 157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34556777788888888888888887777776555
No 166
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.41 E-value=4 Score=45.84 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=78.2
Q ss_pred hhHHHH-----HHHHHHHHhhhhhhhhhhhhH--HHHHHHHHHHHHHhHHHHHHhhhhhchhhH--HHHHHHHHhhhhhH
Q 021465 47 LLEDKI-----AVQAAEIERLARDNHRLAASH--ITMREDLAAAQQEIPRIKAHIRNIHTESDS--HIRVLLDKIAKMEA 117 (312)
Q Consensus 47 ~lE~~l-----~~q~~Ei~~L~~dNqrLa~th--~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~--qiR~L~ek~~k~Ea 117 (312)
-||+=| |....=|.+=--=||-|--.- --+-.|+.-++.||...+.-+.-.-++.-- +.+++-.+..++|.
T Consensus 373 ~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~iee 452 (1041)
T KOG0243|consen 373 NLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEE 452 (1041)
T ss_pred cHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHH
Confidence 667665 334444555555566653211 112223333333333334444444444422 44455566666666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465 118 DCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT 187 (312)
Q Consensus 118 elra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa 187 (312)
.-..++.++.+|.+++.......-..+.|..+...+...|.... .++..++.|++.++..
T Consensus 453 le~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~----------~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 453 LEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKN----------KELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 66677888888888888888778888888888888888777655 5666677777766665
No 167
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.39 E-value=1.7 Score=38.45 Aligned_cols=10 Identities=20% Similarity=0.441 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 021465 150 IQQASEALHK 159 (312)
Q Consensus 150 vq~l~~EL~r 159 (312)
++.++.++.+
T Consensus 160 ~~~~~~~~~~ 169 (191)
T PF04156_consen 160 VQELRSQLER 169 (191)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 168
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.76 Score=39.24 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIanae 227 (312)
++++++......++++|+++|..+-
T Consensus 87 ~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 87 KTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666667777777777777654
No 169
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.34 E-value=3.1 Score=41.49 Aligned_cols=136 Identities=15% Similarity=0.275 Sum_probs=65.2
Q ss_pred HHHHhHHHHHHhh-hhhchhhHHHHHHHHHhhhhhHhh-hhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 021465 83 AQQEIPRIKAHIR-NIHTESDSHIRVLLDKIAKMEADC-KAGERLKKDLQQAHIEAQS----LARARQELTSKIQQASEA 156 (312)
Q Consensus 83 aq~Elq~L~~~~~-~~~ae~e~qiR~L~ek~~k~Eael-ra~e~lk~EL~q~r~e~q~----L~~~rqeL~aevq~l~~E 156 (312)
=+.|+.|+.-.+. .++++. -.=|..+++..++-..+ .....++..|..++.++.+ +.+--+-|-.++..+.++
T Consensus 196 WklEvERV~PqLKv~~~~d~-kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~e 274 (359)
T PF10498_consen 196 WKLEVERVLPQLKVTIRADA-KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQE 274 (359)
T ss_pred HHHHHHHHhhhheeeccCCc-chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3455555544432 334444 45566666666555333 2233344444444433322 222222222222222222
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH----HHHHHH---------HHHHHHHHHHHHHHH
Q 021465 157 LHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL----QAMEKN---------LVGMAREMEKLHAEV 223 (312)
Q Consensus 157 L~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~----qaMEkn---------L~~marEvekLrAEI 223 (312)
.-..+.+|..++.++..+...+..-....++..+++ +.|+.. |+.+.+-+.||+.||
T Consensus 275 ----------Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI 344 (359)
T PF10498_consen 275 ----------YRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEI 344 (359)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 223334555555555555555554444444444444 444433 566677888888888
Q ss_pred HHHHHh
Q 021465 224 VNAEMR 229 (312)
Q Consensus 224 anaekr 229 (312)
..++-|
T Consensus 345 ~qMdvr 350 (359)
T PF10498_consen 345 KQMDVR 350 (359)
T ss_pred HHhhhh
Confidence 887755
No 170
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.33 E-value=8.4 Score=40.83 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKA 92 (312)
Q Consensus 50 ~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~ 92 (312)
+++.....++..+..+=+.+......++.++..++.+++.+..
T Consensus 209 ~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 209 SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555565555555555555544
No 171
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.27 E-value=3.2 Score=44.47 Aligned_cols=32 Identities=16% Similarity=0.207 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHhhhhhchhh
Q 021465 71 ASHITMREDLAAAQQEIPRIKAHIRNIHTESD 102 (312)
Q Consensus 71 ~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e 102 (312)
.+..-|...|..++++|+.....+...+.++.
T Consensus 194 ~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~ 225 (754)
T TIGR01005 194 AAADFLAPEIADLSKQSRDAEAEVAAYRAQSD 225 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34555666666666666666666666665553
No 172
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.24 E-value=5.6 Score=38.44 Aligned_cols=134 Identities=15% Similarity=0.152 Sum_probs=71.6
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 69 LAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTS 148 (312)
Q Consensus 69 La~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~a 148 (312)
|.+.++.|++.+-.++-+.|+|..-.-.++-..|.|.-..|.....||-|+.-.-++| +|+|--|+
T Consensus 50 lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aik---eql~kyiR----------- 115 (333)
T KOG1853|consen 50 LESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIK---EQLRKYIR----------- 115 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-----------
Confidence 4455666666666677777777666666666666676666666655554443333332 22233333
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHH-HHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 149 KIQQASEALHKARLEVKNLPDLHAELD-SLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 149 evq~l~~EL~r~kad~qql~alraELe-~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae 227 (312)
++.....+|++++- ...-.-.+++ .|.|-| ..-+-+|.|..++.-+++.+|-+ ..|.--||.||+-..
T Consensus 116 eLEQaNDdLErakR---ati~sleDfeqrLnqAI-ErnAfLESELdEke~llesvqRL-------kdEardlrqelavr~ 184 (333)
T KOG1853|consen 116 ELEQANDDLERAKR---ATIYSLEDFEQRLNQAI-ERNAFLESELDEKEVLLESVQRL-------KDEARDLRQELAVRT 184 (333)
T ss_pred HHHHhccHHHHhhh---hhhhhHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 35555666766663 1111222222 122222 22233666776666677666543 446667777777444
No 173
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.23 E-value=0.4 Score=37.07 Aligned_cols=64 Identities=23% Similarity=0.266 Sum_probs=44.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHH
Q 021465 67 HRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQ 130 (312)
Q Consensus 67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~ 130 (312)
++|.+...+|+..|..+...+...-..+..|..|+|.=++.|-++..........++.+++||+
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888877777777777788888888888777766555543344444444443
No 174
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.20 E-value=3.2 Score=37.70 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHA 221 (312)
Q Consensus 203 qaMEknL~~marEvekLrA 221 (312)
..++..|..+..+.+.|.+
T Consensus 122 ~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 122 EELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333
No 175
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.18 E-value=6.7 Score=43.95 Aligned_cols=128 Identities=15% Similarity=0.234 Sum_probs=76.7
Q ss_pred HHHHHHHHhhhhhHh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccchhHHHHHH
Q 021465 104 HIRVLLDKIAKMEAD----CKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEV----KNLPDLHAELD 175 (312)
Q Consensus 104 qiR~L~ek~~k~Eae----lra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~----qql~alraELe 175 (312)
..++...+.-++|.+ ....+.+++.+.++..+...|...-.+|...++.++.|.+..+++- ++...|.-++.
T Consensus 231 El~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~k 310 (1200)
T KOG0964|consen 231 ELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIK 310 (1200)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 334444444444444 3455667888888888888888888888888888888777766642 22233334445
Q ss_pred HHHHHHHHHHHH-------HHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465 176 SLRQEHRRLRAT-------FEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGH 231 (312)
Q Consensus 176 ~LrqElq~~Raa-------iE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanaekra~ 231 (312)
.+++++..-+.. +..-+..-++..+++...+..+.++..+-..++..|+..+++.+
T Consensus 311 dlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~ 373 (1200)
T KOG0964|consen 311 DLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQR 373 (1200)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 555444332221 11122223444455566777777777777778888877775443
No 176
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=94.13 E-value=3.2 Score=40.29 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=46.5
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021465 115 MEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGL 194 (312)
Q Consensus 115 ~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~ 194 (312)
.|.+....-.||.|..-+--.+..|...|+.|..+++.-...+.-... ++...+..|+.|.+|+-+++..+|.-...
T Consensus 55 ~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEg---Ql~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 55 VEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEG---QLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445555555555555555555566565555555555544444 66777777888888888888777764433
No 177
>PRK00106 hypothetical protein; Provisional
Probab=94.07 E-value=7.6 Score=40.81 Aligned_cols=37 Identities=11% Similarity=0.080 Sum_probs=22.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
+|.....+|+..+++++..+..++.........|++.
T Consensus 126 eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~ 162 (535)
T PRK00106 126 TLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERV 162 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666666665555555555555
No 178
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=94.07 E-value=7.3 Score=44.30 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHh----hhhhhhhhhh---hHHHHHHHHHHHHHHhHHHHH
Q 021465 47 LLEDKIAVQAAEIER----LARDNHRLAA---SHITMREDLAAAQQEIPRIKA 92 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~----L~~dNqrLa~---th~~L~qeL~aaq~Elq~L~~ 92 (312)
=||+++..-..+++. |...|-++.. ++..+-|....+++.++.++.
T Consensus 106 ~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~ 158 (1109)
T PRK10929 106 ALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIER 158 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 677777544444332 2334444433 332233333555555555544
No 179
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=94.01 E-value=4 Score=40.51 Aligned_cols=121 Identities=18% Similarity=0.247 Sum_probs=64.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh-----hHHHHHHHHHhhhhhHhh----------------------
Q 021465 67 HRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES-----DSHIRVLLDKIAKMEADC---------------------- 119 (312)
Q Consensus 67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~-----e~qiR~L~ek~~k~Eael---------------------- 119 (312)
.-|......++++|..++..|+..+....-+..+. ..++.+|..+.....+++
T Consensus 174 ~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (444)
T TIGR03017 174 LWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSSGKDALPEVIAN 253 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhhcC
Confidence 55788888899999999999999877554443221 122333322222221111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Q 021465 120 KAGERLKKDLQQAHIEAQSLARAR-------QELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFE 189 (312)
Q Consensus 120 ra~e~lk~EL~q~r~e~q~L~~~r-------qeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE 189 (312)
.....++.++.+++.++..|...= +.|-.++..+++.|.+.-. +-+..+..+++.+++....+++.++
T Consensus 254 ~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~--~~~~~~~~~~~~~~~~~~~l~~~l~ 328 (444)
T TIGR03017 254 PIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIK--KVTSSVGTNSRILKQREAELREALE 328 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124568888888887777765421 2334444444444433221 1123334445555555555555544
No 180
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.98 E-value=5.2 Score=37.13 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 131 QAHIEAQSLARARQELTSKIQQASEALHKARL 162 (312)
Q Consensus 131 q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka 162 (312)
.++.+-|++.+.+..-..++.....+|++.+.
T Consensus 126 ~l~~~eqry~aLK~hAeekL~~ANeei~~v~~ 157 (207)
T PF05010_consen 126 RLKKEEQRYQALKAHAEEKLEKANEEIAQVRS 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666654
No 181
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=8.9 Score=39.67 Aligned_cols=60 Identities=20% Similarity=0.306 Sum_probs=31.9
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh------------hHHHHHHHHHhhhhhHhh
Q 021465 59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES------------DSHIRVLLDKIAKMEADC 119 (312)
Q Consensus 59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~------------e~qiR~L~ek~~k~Eael 119 (312)
...+-.+--+ -..+..|+++|.++-+|+++--.....++.|. ...|-++...++|.++|+
T Consensus 334 l~~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI 405 (521)
T KOG1937|consen 334 LKNLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDI 405 (521)
T ss_pred HhcccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3334444444 34467777888888888874433334444443 233444445555555553
No 182
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.94 E-value=2.7 Score=43.81 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=26.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIan 225 (312)
.++.+...++.+++|+..+...-+ ...++-+++...++++...+.++-++|...+.
T Consensus 323 s~e~l~~~~~~l~~eL~~l~~~~~----~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~ 378 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQLDDSDE----SLEALEEEVDKLEEELDKAAVALSLIRRKAAE 378 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544333211 12223333455555555556666666555543
No 183
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.77 E-value=10 Score=39.76 Aligned_cols=84 Identities=19% Similarity=0.221 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 146 LTSKIQQASEALHKARLEVKN--LPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEV 223 (312)
Q Consensus 146 L~aevq~l~~EL~r~kad~qq--l~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEI 223 (312)
+..+++.+++.|......+.+ +......++.+..+|..+-..+|.|.+++...-+....+...+..+.+....|..|+
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~ 329 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEEL 329 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544433 356667778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHh
Q 021465 224 VNAEMR 229 (312)
Q Consensus 224 anaekr 229 (312)
......
T Consensus 330 ~~v~~s 335 (560)
T PF06160_consen 330 ERVSQS 335 (560)
T ss_pred HHHHHh
Confidence 766543
No 184
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.77 E-value=3.3 Score=44.87 Aligned_cols=20 Identities=0% Similarity=0.215 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAE 222 (312)
Q Consensus 203 qaMEknL~~marEvekLrAE 222 (312)
..+-.++..|-.++..|+..
T Consensus 695 ~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 695 KQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444455555555554443
No 185
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=93.69 E-value=0.48 Score=35.94 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=23.6
Q ss_pred hhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 114 KMEADCKAGERLKKDLQQAHIEAQSLARARQE 145 (312)
Q Consensus 114 k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqe 145 (312)
-||+++|+-+.+..||..++.....+...=++
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqe 36 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQE 36 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999888766654443333
No 186
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.66 E-value=1.1 Score=41.27 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=10.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHH
Q 021465 68 RLAASHITMREDLAAAQQEIPRI 90 (312)
Q Consensus 68 rLa~th~~L~qeL~aaq~Elq~L 90 (312)
.+..-...|+++|+.++.+|..+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555444443
No 187
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=93.63 E-value=7.5 Score=37.82 Aligned_cols=135 Identities=14% Similarity=0.134 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhch----hhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 76 MREDLAAAQQEIPRIKAHIRNIHTE----SDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQ 151 (312)
Q Consensus 76 L~qeL~aaq~Elq~L~~~~~~~~ae----~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq 151 (312)
.+.-|..--+||+.-+.....+-.. .|+-.|++.-|-..|+|--|.++-+..|- -+++-||.....-|.+.+++.
T Consensus 51 ~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ek-vlk~aIq~i~~~~q~~~~~Ln 129 (338)
T KOG3647|consen 51 YRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEK-VLKSAIQAIQVRLQSSRAQLN 129 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444777777887776655554332 27777888888888887777666543221 123333333333233333333
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH--------------HHHHHHhhcHHhHHHHHHHHHHHHHHHH
Q 021465 152 QASEALHKARLEVKNLPDLHAELDSLRQEHRRLRA--------------TFEYEKGLNIDNVEQLQAMEKNLVGMAR 214 (312)
Q Consensus 152 ~l~~EL~r~kad~qql~alraELe~LrqElq~~Ra--------------aiE~EKk~~~elleq~qaMEknL~~mar 214 (312)
....+.+.+-+ +|+--|+|++..|+-++.+++ .+...-..|+....-+..+++.++..++
T Consensus 130 nvasdea~L~~---Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~r 203 (338)
T KOG3647|consen 130 NVASDEAALGS---KIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTR 203 (338)
T ss_pred HHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 33333322222 333344444444444333332 1111112234444455677777777666
No 188
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.62 E-value=5.5 Score=36.17 Aligned_cols=28 Identities=0% Similarity=0.236 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465 74 ITMREDLAAAQQEIPRIKAHIRNIHTES 101 (312)
Q Consensus 74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~ 101 (312)
..|+|.|-..+++|..++..+..+.+..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~ 53 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQ 53 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444444
No 189
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.57 E-value=5.8 Score=36.32 Aligned_cols=97 Identities=14% Similarity=0.276 Sum_probs=61.3
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHH
Q 021465 53 AVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQA 132 (312)
Q Consensus 53 ~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~ 132 (312)
+.-..++..+..+|++|..-+..+++++..++.+|......-. .+..+-.+...++.++ ..|+-|-+.+
T Consensus 44 ~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~--------~L~~~k~rl~~~ek~l---~~Lk~e~evL 112 (201)
T PF13851_consen 44 ERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQ--------SLQNLKARLKELEKEL---KDLKWEHEVL 112 (201)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3344467777888888887777777777777666665544322 2223333344444333 3466677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 133 HIEAQSLARARQELTSKIQQASEALHKA 160 (312)
Q Consensus 133 r~e~q~L~~~rqeL~aevq~l~~EL~r~ 160 (312)
.....++...|.+|.......-.|+.+.
T Consensus 113 ~qr~~kle~ErdeL~~kf~~~i~evqQk 140 (201)
T PF13851_consen 113 EQRFEKLEQERDELYRKFESAIQEVQQK 140 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888888887777777777553
No 190
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=93.54 E-value=9 Score=43.08 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h---cccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHh
Q 021465 126 KKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL----E---VKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDN 198 (312)
Q Consensus 126 k~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka----d---~qql~alraELe~LrqElq~~RaaiE~EKk~~~el 198 (312)
..++..++..++.+......+.+.+..+.+.|..... + --.++.+.+.+..+++++..++..+.. ....
T Consensus 776 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~ 851 (1047)
T PRK10246 776 EETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGE----IRQQ 851 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 3456667777777777777777766666656654111 0 124566677777777776666655321 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 199 VEQLQAMEKNLVGMAREMEKLHAEVVNA 226 (312)
Q Consensus 199 leq~qaMEknL~~marEvekLrAEIana 226 (312)
+...+...+.+..+..+++.++.+...+
T Consensus 852 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 879 (1047)
T PRK10246 852 LKQDADNRQQQQALMQQIAQATQQVEDW 879 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555555444433
No 191
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=93.52 E-value=6.7 Score=39.05 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEV 223 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEI 223 (312)
...+.++.....++.+++..+
T Consensus 230 ~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 230 ETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555444
No 192
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=93.50 E-value=11 Score=39.20 Aligned_cols=31 Identities=13% Similarity=-0.022 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 172 AELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 172 aELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
..++.+..+-.+.|.++..+.+.-.++-.++
T Consensus 154 ~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i 184 (475)
T PRK10361 154 RQVQDSFGKEAQERHTLAHEIRNLQQLNAQM 184 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444433333333333
No 193
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=93.49 E-value=4.2 Score=40.48 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhh--hchhhHHHHHHHHHhhhhhHhh----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 73 HITMREDLAAAQQEIPRIKAHIRNI--HTESDSHIRVLLDKIAKMEADC----KAGERLKKDLQQAHIEAQSLARARQEL 146 (312)
Q Consensus 73 h~~L~qeL~aaq~Elq~L~~~~~~~--~ae~e~qiR~L~ek~~k~Eael----ra~e~lk~EL~q~r~e~q~L~~~rqeL 146 (312)
+..+++.|..+..++..+...-..+ .++.+..|-+||+..-+++.-. .-++.|| -|..+|.++..|...=..|
T Consensus 263 Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~-tL~~lH~~a~~~~~~l~~l 341 (388)
T PF04912_consen 263 LDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLK-TLKSLHEEAAEFSQTLSEL 341 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777665544433 4455778888888888887654 3455566 6666677766655444444
Q ss_pred HHHHHHHHHHH
Q 021465 147 TSKIQQASEAL 157 (312)
Q Consensus 147 ~aevq~l~~EL 157 (312)
-.....+..+|
T Consensus 342 e~~q~~l~~~l 352 (388)
T PF04912_consen 342 ESQQSDLQSQL 352 (388)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 194
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.47 E-value=7.6 Score=37.98 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=67.1
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHH
Q 021465 54 VQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAH 133 (312)
Q Consensus 54 ~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r 133 (312)
.-.+|++.+-.+-..|++--+.|+..|++++.|++-|.+-.-+.+.|.--+...|.+-+ +..|.+-.+++
T Consensus 34 iL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i----------~etkeeNlkLr 103 (389)
T KOG4687|consen 34 ILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADI----------EETKEENLKLR 103 (389)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHH----------HHHHHHhHhhh
Confidence 33455666666667777878888888888888888776655555544433333343333 55666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465 134 IEAQSLARARQELTSKIQQASEALHKARLEVK 165 (312)
Q Consensus 134 ~e~q~L~~~rqeL~aevq~l~~EL~r~kad~q 165 (312)
.|.+.|.-+..+|......+++..+..+.+++
T Consensus 104 Td~eaL~dq~adLhgD~elfReTeAq~ese~~ 135 (389)
T KOG4687|consen 104 TDREALLDQKADLHGDCELFRETEAQFESEKM 135 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh
Confidence 77777777777777777777777766665443
No 195
>PF15294 Leu_zip: Leucine zipper
Probab=93.45 E-value=1.9 Score=41.78 Aligned_cols=139 Identities=19% Similarity=0.319 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhc------------hhhHHHHHHHHHhhhhhHhh
Q 021465 52 IAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHT------------ESDSHIRVLLDKIAKMEADC 119 (312)
Q Consensus 52 l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~a------------e~e~qiR~L~ek~~k~Eael 119 (312)
.+....||.+|-.||..|..-...++..-..+-+|=-.|.+.+.+++. -++.++-+|..+.+.+
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~l---- 202 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAAL---- 202 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHH----
Confidence 456778999999999888776666666554444444444433333332 2344555555554333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH
Q 021465 120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV 199 (312)
Q Consensus 120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ell 199 (312)
|.++++. ++.....-+.|-..++.-+.+|-+.+. ++..... +.|+|. ...
T Consensus 203 ------K~e~ek~---~~d~~~~~k~L~e~L~~~KhelL~~Qe---qL~~aek----------------eLekKf--qqT 252 (278)
T PF15294_consen 203 ------KSELEKA---LQDKESQQKALEETLQSCKHELLRVQE---QLSLAEK----------------ELEKKF--QQT 252 (278)
T ss_pred ------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcch---hhhcchh----------------hHHHHh--Ccc
Confidence 3333333 222223334444445555555555443 1222222 222322 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 200 EQLQAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 200 eq~qaMEknL~~marEvekLrAEIa 224 (312)
.+-.-|..-|..-..++..||..|+
T Consensus 253 ~ay~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 253 AAYRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred HHHHHhHHHHHhccHHHHHHHHHhc
Confidence 4455666666666777777777654
No 196
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=93.43 E-value=0.18 Score=55.49 Aligned_cols=38 Identities=26% Similarity=0.363 Sum_probs=23.6
Q ss_pred HHHHHHHHHH---HHhhcHHhHHHHHHHHHHHHHHHHHHHH
Q 021465 181 HRRLRATFEY---EKGLNIDNVEQLQAMEKNLVGMAREMEK 218 (312)
Q Consensus 181 lq~~RaaiE~---EKk~~~elleq~qaMEknL~~marEvek 218 (312)
|-.+|+++|. |--.+-+.+.|+.--...|..|-|++-.
T Consensus 1098 ItgLr~AmEaLvvev~knPaiIsqLdpvnarllnmiRdIs~ 1138 (1282)
T KOG0921|consen 1098 ITGLRPAMEALVVEVCKNPAIISQLDPVNARLLNMIRDISR 1138 (1282)
T ss_pred HhhhHHHHHHHHHHHhcChhHhhccCchhHHHHHHHHHhcc
Confidence 3445555443 5556677777877777777777776543
No 197
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=93.41 E-value=5.4 Score=35.49 Aligned_cols=23 Identities=13% Similarity=0.398 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIan 225 (312)
..++..+..+..++|.++-++-+
T Consensus 134 ~ki~~ei~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 134 NKIDTEIANLRTEIESLKWDTLR 156 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777777766654
No 198
>PRK11281 hypothetical protein; Provisional
Probab=93.41 E-value=7.8 Score=44.09 Aligned_cols=27 Identities=15% Similarity=0.343 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhc
Q 021465 73 HITMREDLAAAQQEIPRIKAHIRNIHT 99 (312)
Q Consensus 73 h~~L~qeL~aaq~Elq~L~~~~~~~~a 99 (312)
...|++.|..+.++++.....+.+++.
T Consensus 82 ~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 82 TEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 344444455554555444444444443
No 199
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=93.41 E-value=11 Score=39.19 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021465 208 NLVGMAREMEKLHAEVV 224 (312)
Q Consensus 208 nL~~marEvekLrAEIa 224 (312)
++..+..++++++.++.
T Consensus 347 ~le~L~~el~~l~~~l~ 363 (563)
T TIGR00634 347 SLEALEEEVDKLEEELD 363 (563)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333344444444433
No 200
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.38 E-value=4.7 Score=34.66 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021465 173 ELDSLRQEHRRLRATFEYE 191 (312)
Q Consensus 173 ELe~LrqElq~~RaaiE~E 191 (312)
|+..++.-++..++.++.|
T Consensus 116 e~~klk~~~~~~~tq~~~e 134 (151)
T PF11559_consen 116 ELQKLKNQLQQRKTQYEHE 134 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 201
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.33 E-value=16 Score=40.56 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHH
Q 021465 170 LHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAME 206 (312)
Q Consensus 170 lraELe~LrqElq~~RaaiE~EKk~~~elleq~qaME 206 (312)
+-.+|+.--.++...++.+..|+....+++..++.|-
T Consensus 264 sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeL 300 (1265)
T KOG0976|consen 264 SAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEEL 300 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3344444445566667777778877777776664443
No 202
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=93.30 E-value=4.6 Score=36.86 Aligned_cols=97 Identities=14% Similarity=0.194 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhc----HHhHHHH
Q 021465 127 KDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLN----IDNVEQL 202 (312)
Q Consensus 127 ~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~----~elleq~ 202 (312)
.||.++..++++|...-|.|....-....||.-+.+-+ .+|.++.+|..|++|....|..++.-|.+. .+-.+++
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v 157 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQV 157 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 47777778888777777777766666666666666533 779999999999999999999988877765 3555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIa 224 (312)
..+-++...+=+....+=.+|-
T Consensus 158 ~~~y~~~~~~wrk~krmf~ei~ 179 (201)
T KOG4603|consen 158 YREYQKYCKEWRKRKRMFREII 179 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555556666555555555554
No 203
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=11 Score=38.89 Aligned_cols=25 Identities=8% Similarity=0.223 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIanae 227 (312)
++|.+-+-+...-+-|.+++|.+..
T Consensus 385 k~ytqrikEi~gniRKq~~DI~Kil 409 (521)
T KOG1937|consen 385 KVYTQRIKEIDGNIRKQEQDIVKIL 409 (521)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5555555555555555555555443
No 204
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=93.18 E-value=7.5 Score=36.47 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLK 126 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk 126 (312)
-|+-.++--..+++.+.....--......++.++..+..|+..|.. ++.....++-++. ...+.+.
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~-----------k~~~~~~~~~~l~---~~t~~t~ 86 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQE-----------KATKVSRKAQQLN---NNTERTL 86 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH---HHHHHHH
Confidence 5566666666677766665544444455566666666666666655 3333333333322 3334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH-----HHHHHHHHHHHhhcHHhHHH
Q 021465 127 KDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEH-----RRLRATFEYEKGLNIDNVEQ 201 (312)
Q Consensus 127 ~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqEl-----q~~RaaiE~EKk~~~elleq 201 (312)
....++...++++...=++|+.++..+..+.. ......+....+|++.|=+|+ ...+...+.|++...+++..
T Consensus 87 ~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~--~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~ 164 (264)
T PF06008_consen 87 QRAQDLEQFIQNLQDNIQELIEQVESLNENGD--QLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSR 164 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccC--CCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555544110 001122333334443333333 34444455566666666665
Q ss_pred H
Q 021465 202 L 202 (312)
Q Consensus 202 ~ 202 (312)
+
T Consensus 165 v 165 (264)
T PF06008_consen 165 V 165 (264)
T ss_pred H
Confidence 5
No 205
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.15 E-value=7.2 Score=36.20 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEVVNA 226 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIana 226 (312)
...+++...+.++++.|..+|...
T Consensus 193 e~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 193 EFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555543
No 206
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.15 E-value=1.1 Score=34.72 Aligned_cols=61 Identities=23% Similarity=0.241 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRA 186 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Ra 186 (312)
..|+..|.++..++.......+.|..+-......|..+.. .+..|++|++.|++|+++.|+
T Consensus 8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~---e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYE---ENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhc
Confidence 3456666666666666555556666655555555555554 556666888888888877764
No 207
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=1.7 Score=46.08 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=10.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFE 189 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE 189 (312)
++.++..+|+.|+.+|+..+..+|
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 208
>PRK12704 phosphodiesterase; Provisional
Probab=93.06 E-value=13 Score=38.85 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=4.6
Q ss_pred HHHHHhHHHHH
Q 021465 82 AAQQEIPRIKA 92 (312)
Q Consensus 82 aaq~Elq~L~~ 92 (312)
.+++|+...+.
T Consensus 61 eaeeE~~~~R~ 71 (520)
T PRK12704 61 EAKEEIHKLRN 71 (520)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 209
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.01 E-value=12 Score=38.39 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHhHHHH-------HHHHHHHHHHHHHHHHHH
Q 021465 175 DSLRQEHRRLRATFEYEKGLNIDNVEQL-------QAMEKNLVGMAREMEKLH 220 (312)
Q Consensus 175 e~LrqElq~~RaaiE~EKk~~~elleq~-------qaMEknL~~marEvekLr 220 (312)
+.++.|++-+|..++.|.-...++-.++ ...+..+.++..+.+.|.
T Consensus 437 e~l~~ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~ 489 (542)
T KOG0993|consen 437 EDLVKEIQSLQEQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLH 489 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 4566777777777777777776666665 556666777777777775
No 210
>PRK11519 tyrosine kinase; Provisional
Probab=92.99 E-value=2.4 Score=45.56 Aligned_cols=48 Identities=10% Similarity=0.260 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHhhhhhchh-----hHHHHHHHHHhhhhhHhh
Q 021465 72 SHITMREDLAAAQQEIPRIKAHIRNIHTES-----DSHIRVLLDKIAKMEADC 119 (312)
Q Consensus 72 th~~L~qeL~aaq~Elq~L~~~~~~~~ae~-----e~qiR~L~ek~~k~Eael 119 (312)
+..=|++.|..++++|......+.+.+.++ +.+.+.+++....+++.+
T Consensus 268 a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql 320 (719)
T PRK11519 268 SLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQL 320 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333 233444445544444433
No 211
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=92.94 E-value=3.2 Score=37.85 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=51.9
Q ss_pred HHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 79 DLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALH 158 (312)
Q Consensus 79 eL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~ 158 (312)
+|+.+..+|++|.+ +++.|-+.+.-+|||++++...= -+++.+-+++ +|-.++...++.|.
T Consensus 80 el~~ld~~i~~l~e-----------k~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~-------~L~kev~~~~erl~ 140 (201)
T KOG4603|consen 80 ELQVLDGKIVALTE-----------KVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQ-------ELKKEVAGYRERLK 140 (201)
T ss_pred HHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 45555555555544 66666677777777776655543 2333333333 34444555555555
Q ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 159 KARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 159 r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
..++-. ...-..+.++...+.++.=...-..+.-+.+.++.+
T Consensus 141 ~~k~g~--~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~ 182 (201)
T KOG4603|consen 141 NIKAGT--NHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKL 182 (201)
T ss_pred HHHHhc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544311 111123444555555555555554555555555554
No 212
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.90 E-value=12 Score=42.97 Aligned_cols=21 Identities=14% Similarity=0.406 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEV 223 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEI 223 (312)
...+..|..+..+++.+...|
T Consensus 1727 ~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1727 EDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444544444444
No 213
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.88 E-value=8.1 Score=36.03 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHH
Q 021465 132 AHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVG 211 (312)
Q Consensus 132 ~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~ 211 (312)
.+.++.++..++++|..++..+.++++..+. ....+...++.+++++..+...++.-.+...++.--+..|-..|..
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~---~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEV---YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666665 4455555566666666666666666666665555555555555554
No 214
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=92.88 E-value=0.67 Score=48.98 Aligned_cols=61 Identities=25% Similarity=0.361 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRA 186 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Ra 186 (312)
+.++.-+.-+.-|+..|.+-||+|-.++..++..++..|. .|+.-+.||.+|+-+++.++-
T Consensus 82 ~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~---~i~~~q~eL~~Lk~~ieqaq~ 142 (907)
T KOG2264|consen 82 REQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKR---LIPQKQLELSALKGEIEQAQR 142 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHhHHHHHHHHhHHHHHHH
Confidence 3344455555555555555565555555555444444331 333333444444444444443
No 215
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.86 E-value=14 Score=38.61 Aligned_cols=11 Identities=36% Similarity=0.462 Sum_probs=5.6
Q ss_pred ccccccCCCCC
Q 021465 302 VGAVWGGSYDP 312 (312)
Q Consensus 302 ~~~~~~~~~d~ 312 (312)
+.++...+|||
T Consensus 244 p~~v~ls~fdp 254 (514)
T TIGR03319 244 PEAVILSGFDP 254 (514)
T ss_pred CCeEEecCCch
Confidence 44444555555
No 216
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.82 E-value=8.5 Score=36.12 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKA 92 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~ 92 (312)
-|+..+......+..-..+=+.|...-....+.-..+...|+.+..
T Consensus 56 ~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~ 101 (264)
T PF06008_consen 56 SLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQD 101 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666555555555555555554444444444444444444433
No 217
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.81 E-value=1.7 Score=40.17 Aligned_cols=28 Identities=11% Similarity=0.330 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhch
Q 021465 73 HITMREDLAAAQQEIPRIKAHIRNIHTE 100 (312)
Q Consensus 73 h~~L~qeL~aaq~Elq~L~~~~~~~~ae 100 (312)
...++..|..+++||..|...+.++..+
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4466777788888887777755555544
No 218
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.73 E-value=13 Score=39.45 Aligned_cols=80 Identities=18% Similarity=0.339 Sum_probs=42.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh------------------hHHHHHHHHHhhhhhHhhhhhHHH
Q 021465 64 RDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES------------------DSHIRVLLDKIAKMEADCKAGERL 125 (312)
Q Consensus 64 ~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~------------------e~qiR~L~ek~~k~Eaelra~e~l 125 (312)
.+-.-|--....|+-++-.+.+||..++.+....++-+ -..=-.+..|+.+||.||+ .+
T Consensus 43 eeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLK---q~ 119 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELK---QL 119 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HH
Confidence 33344445555566677777778877777666544332 1112234466777777764 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021465 126 KKDLQQAHIEAQSLARARQEL 146 (312)
Q Consensus 126 k~EL~q~r~e~q~L~~~rqeL 146 (312)
+++|..++.|..+|...-+++
T Consensus 120 r~el~~~q~E~erl~~~~sd~ 140 (772)
T KOG0999|consen 120 RQELTNVQEENERLEKVHSDL 140 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444443333
No 219
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.71 E-value=8.9 Score=42.03 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHH
Q 021465 133 HIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGM 212 (312)
Q Consensus 133 r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~m 212 (312)
+.++..+......+-.+++.++.-...... +++.+.+|+..++..+..+...|+.|+....+....-+.++.+|.++
T Consensus 637 q~eL~~~keS~s~~E~ql~~~~e~~e~le~---~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~ 713 (769)
T PF05911_consen 637 QSELESAKESNSLAETQLKAMKESYESLET---RLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERM 713 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhh
Confidence 333333344444444444444433333333 55666788888888888888888888888888888888887777777
Q ss_pred HHHH
Q 021465 213 AREM 216 (312)
Q Consensus 213 arEv 216 (312)
..+.
T Consensus 714 ~~~~ 717 (769)
T PF05911_consen 714 KKEE 717 (769)
T ss_pred hccc
Confidence 7654
No 220
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=17 Score=39.37 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465 203 QAMEKNLVGMAREMEKLHAEVVNAEMRGH 231 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIanaekra~ 231 (312)
..+.++.-.+..|.++|+..+....+...
T Consensus 597 e~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 597 EIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 44555555555566666666655444333
No 221
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=92.66 E-value=5.2 Score=41.83 Aligned_cols=56 Identities=21% Similarity=0.315 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNA 226 (312)
Q Consensus 168 ~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIana 226 (312)
..+..+|..+.+.+.+++..++.-++-|.+|| ..|-.-|++|...+.+-+.+|.+.
T Consensus 458 ~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QL---s~MSEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 458 ESLEEELKEANQNISRLQDELETTRRNYEEQL---SMMSEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777777776666666666544 444445555555555555555443
No 222
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.66 E-value=3.5 Score=45.01 Aligned_cols=48 Identities=23% Similarity=0.385 Sum_probs=25.9
Q ss_pred hhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 114 KMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR 161 (312)
Q Consensus 114 k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k 161 (312)
++|..+..++..+.++++.+.++.++...-+++..+++...++|.+.+
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~ 564 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEE 564 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555554444
No 223
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=92.66 E-value=9.9 Score=36.50 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 021465 208 NLVGMAREMEKLHAEVVNAEMRGH 231 (312)
Q Consensus 208 nL~~marEvekLrAEIanaekra~ 231 (312)
.+..+..+|.+|++|+......++
T Consensus 201 ~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 201 EIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566677788888877766555
No 224
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=92.64 E-value=2.5 Score=42.66 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465 146 LTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT 187 (312)
Q Consensus 146 L~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa 187 (312)
+..+.+.+.+++++.+..+..++....++..|..|++..|..
T Consensus 347 l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ 388 (458)
T COG3206 347 LEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSL 388 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444444443
No 225
>PRK00106 hypothetical protein; Provisional
Probab=92.62 E-value=15 Score=38.60 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=5.3
Q ss_pred ccccccCCCCC
Q 021465 302 VGAVWGGSYDP 312 (312)
Q Consensus 302 ~~~~~~~~~d~ 312 (312)
+.++...+|||
T Consensus 265 p~~v~lS~fdp 275 (535)
T PRK00106 265 PEVVVLSGFDP 275 (535)
T ss_pred CCeEEEeCCCh
Confidence 34444555555
No 226
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=92.58 E-value=1 Score=35.74 Aligned_cols=58 Identities=21% Similarity=0.406 Sum_probs=37.2
Q ss_pred chhHHHHHHHHHHHHHHHHHH-HHHHHhhcHHhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Q 021465 167 LPDLHAELDSLRQEHRRLRAT-FEYEKGLNIDNVEQLQAMEKNLVGMAR-----------EMEKLHAEVVN 225 (312)
Q Consensus 167 l~alraELe~LrqElq~~Raa-iE~EKk~~~elleq~qaMEknL~~mar-----------EvekLrAEIan 225 (312)
|+++|+|.+.+-+|+...+.. -+||.| ...++.+++.+.+.+-.|.. ||.+|+.+|.+
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~k-i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHK-INSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888887777776 555555 55666666555555555544 56666666553
No 227
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=92.54 E-value=7.6 Score=36.93 Aligned_cols=14 Identities=29% Similarity=0.273 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 021465 214 REMEKLHAEVVNAE 227 (312)
Q Consensus 214 rEvekLrAEIanae 227 (312)
.+++.+++.+..++
T Consensus 186 ~~~~~~~~~l~~a~ 199 (327)
T TIGR02971 186 AEVKSALEAVQQAE 199 (327)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 228
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.50 E-value=6.4 Score=42.81 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=20.1
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 116 EADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQAS 154 (312)
Q Consensus 116 Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~ 154 (312)
|...+..+.+|+.|.+.+.+-.+|......|..++..|+
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333344455555555555555555555555555555555
No 229
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=92.45 E-value=2.5 Score=35.94 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=29.0
Q ss_pred HHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021465 188 FEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRG 230 (312)
Q Consensus 188 iE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanaekra 230 (312)
+++-++....+-++++.+++++....++++++...+..+..+.
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444555667888888888888888888887766543
No 230
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=92.44 E-value=4.1 Score=40.49 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHH-------------HHHHHHHHHHHHHHhhcHHhHHHH-HHHHHHHHHHHH
Q 021465 149 KIQQASEALHKARLEVKNLPDLHAELDSLR-------------QEHRRLRATFEYEKGLNIDNVEQL-QAMEKNLVGMAR 214 (312)
Q Consensus 149 evq~l~~EL~r~kad~qql~alraELe~Lr-------------qElq~~RaaiE~EKk~~~elleq~-qaMEknL~~mar 214 (312)
+|..|-.-|.+...=...||.+-.-|..|+ .+++..++.+..+.+...+.|..+ +.|..|+..+..
T Consensus 296 KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~ 375 (388)
T PF04912_consen 296 KIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEK 375 (388)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444433345556555555555 666677777777888888888888 778888888888
Q ss_pred HHHHHHHHHHH
Q 021465 215 EMEKLHAEVVN 225 (312)
Q Consensus 215 EvekLrAEIan 225 (312)
.+++|..-|+.
T Consensus 376 n~~~le~Ri~~ 386 (388)
T PF04912_consen 376 NVKKLEERIAK 386 (388)
T ss_pred HHHHHHHHHhc
Confidence 88888877764
No 231
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.34 E-value=6 Score=33.27 Aligned_cols=72 Identities=22% Similarity=0.317 Sum_probs=34.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 68 RLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELT 147 (312)
Q Consensus 68 rLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~ 147 (312)
+|-++...++-.|++++.+|......+..+..++ +.|+.-+..+++..-++..--.+|-
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqk---------------------d~L~~~l~~L~~q~~s~~qr~~eLq 64 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQK---------------------DQLRNALQSLQAQNASRNQRIAELQ 64 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666554444444 3355555555555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 021465 148 SKIQQASEALHKA 160 (312)
Q Consensus 148 aevq~l~~EL~r~ 160 (312)
++|..+.+.|+..
T Consensus 65 aki~ea~~~le~e 77 (107)
T PF09304_consen 65 AKIDEARRNLEDE 77 (107)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 232
>PF15294 Leu_zip: Leucine zipper
Probab=92.33 E-value=5.5 Score=38.60 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 200 EQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 200 eq~qaMEknL~~marEvekLrAEIanae 227 (312)
++.++++-+|.+-..++-++...+..++
T Consensus 215 ~~~k~L~e~L~~~KhelL~~QeqL~~ae 242 (278)
T PF15294_consen 215 SQQKALEETLQSCKHELLRVQEQLSLAE 242 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhcch
Confidence 3555666666666666655555555444
No 233
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.19 E-value=3.4 Score=40.32 Aligned_cols=94 Identities=19% Similarity=0.261 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 144 QELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEV 223 (312)
Q Consensus 144 qeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEI 223 (312)
.++..+++.+.+|-..+.. +|..+..|-+.+.+|+..++...+.-+..-.+...+......++..+..+.+.|.+.+
T Consensus 46 ~~~~~el~~le~Ee~~l~~---eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~ 122 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQ---ELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQY 122 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555553 4455555556666666666665444444444666666888888899999999999998
Q ss_pred HHHHH---hccCCCCCcccc
Q 021465 224 VNAEM---RGHAPNPYSRTY 240 (312)
Q Consensus 224 anaek---ra~a~~~y~~~~ 240 (312)
..+.. +.+--|.|+..|
T Consensus 123 ~~~~~~L~~L~ktNv~n~~F 142 (314)
T PF04111_consen 123 EYASNQLDRLRKTNVYNDTF 142 (314)
T ss_dssp HHHHHHHHCHHT--TTTTT-
T ss_pred HHHHHHHHHHHhcCchhcee
Confidence 87763 344456777666
No 234
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=92.19 E-value=7.6 Score=36.60 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021465 207 KNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 207 knL~~marEvekLrAEIan 225 (312)
+.+..+....++-..++.+
T Consensus 110 ~el~~ar~~~~~ak~~L~~ 128 (246)
T PF00769_consen 110 EELEEAREDEEEAKEELLE 128 (246)
T ss_dssp HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 235
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.13 E-value=4.3 Score=40.47 Aligned_cols=98 Identities=18% Similarity=0.290 Sum_probs=61.8
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHH----hhhhhHhhhhhHHHHHHHHHH
Q 021465 57 AEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDK----IAKMEADCKAGERLKKDLQQA 132 (312)
Q Consensus 57 ~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek----~~k~Eaelra~e~lk~EL~q~ 132 (312)
.-|++|...|..|.... ..+.--|.|.+.|+.+..++.++- .+.|++.-| ..+||.-++ .++.|-.++
T Consensus 75 ~kirk~~e~~eglr~i~----es~~e~q~e~~qL~~qnqkL~nqL-~~~~~vf~k~k~~~q~LE~li~---~~~EEn~~l 146 (401)
T PF06785_consen 75 TKIRKITEKDEGLRKIR----ESVEERQQESEQLQSQNQKLKNQL-FHVREVFMKTKGDIQHLEGLIR---HLREENQCL 146 (401)
T ss_pred HHHHHHHhccHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhcchHHHHHHHHH---HHHHHHHHH
Confidence 44777777777776654 444455777777777777777665 344544322 234454332 345566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 133 HIEAQSLARARQELTSKIQQASEALHKARL 162 (312)
Q Consensus 133 r~e~q~L~~~rqeL~aevq~l~~EL~r~ka 162 (312)
+..++.+.....|...+.+.|.+||+...+
T Consensus 147 qlqL~~l~~e~~Ekeeesq~LnrELaE~la 176 (401)
T PF06785_consen 147 QLQLDALQQECGEKEEESQTLNRELAEALA 176 (401)
T ss_pred HHhHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777755443
No 236
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=92.10 E-value=8.7 Score=35.29 Aligned_cols=35 Identities=9% Similarity=0.247 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 125 LKKDLQQAHIEAQSLARARQELTSKIQQASEALHK 159 (312)
Q Consensus 125 lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r 159 (312)
++.+|.+++..+-+..+..+.+-.++......+.+
T Consensus 36 m~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~ 70 (219)
T TIGR02977 36 MEDTLVEVRTTSARTIADKKELERRVSRLEAQVAD 70 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444433
No 237
>PLN02939 transferase, transferring glycosyl groups
Probab=92.10 E-value=11 Score=42.24 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhchh------hHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 021465 77 REDLAAAQQEIPRIKAHIRNIHTES------DSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQE-LTSK 149 (312)
Q Consensus 77 ~qeL~aaq~Elq~L~~~~~~~~ae~------e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqe-L~ae 149 (312)
-++|..+++|.--|+..|..++++- |..+..|.....-|++-|+.+|. .+...+.++-+|.....+ +.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 301 (977)
T PLN02939 225 SKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELES---KFIVAQEDVSKLSPLQYDCWWEK 301 (977)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhhhccchhHHHHHHH
Confidence 3455555555555555555555443 33344444444444443333322 223344444444444333 4445
Q ss_pred HHHHHHHHHH
Q 021465 150 IQQASEALHK 159 (312)
Q Consensus 150 vq~l~~EL~r 159 (312)
|..|..-|.+
T Consensus 302 ~~~~~~~~~~ 311 (977)
T PLN02939 302 VENLQDLLDR 311 (977)
T ss_pred HHHHHHHHHH
Confidence 5554444433
No 238
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=92.10 E-value=7.8 Score=40.08 Aligned_cols=45 Identities=16% Similarity=0.229 Sum_probs=24.3
Q ss_pred HHHHHhhhhhHhhh-hhHHH----------HHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 021465 107 VLLDKIAKMEADCK-AGERL----------KKDLQQAHIEAQS--LARARQELTSKIQ 151 (312)
Q Consensus 107 ~L~ek~~k~Eaelr-a~e~l----------k~EL~q~r~e~q~--L~~~rqeL~aevq 151 (312)
....|..+.|.+.| .+|.+ |+|+.+.+..++. |....++|+.-.+
T Consensus 235 ~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~ 292 (554)
T KOG4677|consen 235 IFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHY 292 (554)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34456666666655 22322 4555555555555 6666666655443
No 239
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=92.09 E-value=1.9 Score=34.95 Aligned_cols=73 Identities=23% Similarity=0.303 Sum_probs=38.7
Q ss_pred HHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Q 021465 106 RVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLR 185 (312)
Q Consensus 106 R~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~R 185 (312)
..+..|. ....++..+-.+-.+..++..+++.|.+.++.++.++..++.. ......++++...++.++..+.
T Consensus 16 ~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~-------~~~~~~l~~e~~~lk~~i~~le 87 (108)
T PF02403_consen 16 ENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA-------GEDAEELKAEVKELKEEIKELE 87 (108)
T ss_dssp HHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT-------TCCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC-------cccHHHHHHHHHHHHHHHHHHH
Confidence 3333343 4444555555555555666666666666666666555554432 1244555555555555555444
Q ss_pred H
Q 021465 186 A 186 (312)
Q Consensus 186 a 186 (312)
.
T Consensus 88 ~ 88 (108)
T PF02403_consen 88 E 88 (108)
T ss_dssp H
T ss_pred H
Confidence 4
No 240
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=92.09 E-value=2.6 Score=34.30 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEVVNA 226 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIana 226 (312)
+.+++++..+..++.+++.+|..+
T Consensus 80 ~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 80 KRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555543
No 241
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=92.06 E-value=6.3 Score=39.24 Aligned_cols=17 Identities=0% Similarity=0.245 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021465 201 QLQAMEKNLVGMAREME 217 (312)
Q Consensus 201 q~qaMEknL~~marEve 217 (312)
+++..+.++......++
T Consensus 235 ~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 235 RIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555555555555553
No 242
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.02 E-value=10 Score=35.19 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021465 145 ELTSKIQQASEALHKAR 161 (312)
Q Consensus 145 eL~aevq~l~~EL~r~k 161 (312)
+...++..+..+|.++.
T Consensus 117 E~~rkl~~~E~~Le~aE 133 (237)
T PF00261_consen 117 EVERKLKVLEQELERAE 133 (237)
T ss_dssp HCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 243
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=91.91 E-value=13 Score=36.09 Aligned_cols=144 Identities=17% Similarity=0.233 Sum_probs=84.4
Q ss_pred HHHHHHHhHHHHHHhhhhhchh---hHHHHHH-HHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHH------------HH
Q 021465 80 LAAAQQEIPRIKAHIRNIHTES---DSHIRVL-LDKIAKMEADCKAGERLKKDLQQAHIEAQSLAR------------AR 143 (312)
Q Consensus 80 L~aaq~Elq~L~~~~~~~~ae~---e~qiR~L-~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~------------~r 143 (312)
|+.-.+|++-+...|+.+++-. -+|.|.+ +|=.-.++ -..||.+|++-+..+..+.. --
T Consensus 138 lA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~-----F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tG 212 (330)
T KOG2991|consen 138 LATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLF-----FLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTG 212 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHH-----HHHHHHHHHHHHHHHHHHHhhhheeeecCCCcch
Confidence 4444566666666666655543 2333322 22222221 24567777766655554432 23
Q ss_pred HHHHHHHHHHHHH---HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021465 144 QELTSKIQQASEA---LHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLH 220 (312)
Q Consensus 144 qeL~aevq~l~~E---L~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLr 220 (312)
+.|+++-..|.+| |-+.-+ .-.|..|-.||.--+.--+.+|+.++.--+--.++-+.+.-|...++-+..+++.-|
T Consensus 213 K~LMAKCR~L~qENeElG~q~s-~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr 291 (330)
T KOG2991|consen 213 KMLMAKCRTLQQENEELGHQAS-EGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETR 291 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh-cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 5566665555443 333222 225667777777666677777777776555556666677778888888888888888
Q ss_pred HHHHHHHHh
Q 021465 221 AEVVNAEMR 229 (312)
Q Consensus 221 AEIanaekr 229 (312)
.+|...++-
T Consensus 292 ~~Iq~l~k~ 300 (330)
T KOG2991|consen 292 KEIQRLKKG 300 (330)
T ss_pred HHHHHHHHH
Confidence 888776643
No 244
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=5.2 Score=34.02 Aligned_cols=26 Identities=12% Similarity=0.203 Sum_probs=15.1
Q ss_pred HHHhhhhhHhhhhhHHHHHHHHHHHH
Q 021465 109 LDKIAKMEADCKAGERLKKDLQQAHI 134 (312)
Q Consensus 109 ~ek~~k~Eaelra~e~lk~EL~q~r~ 134 (312)
+.-..|||..|.++.-++.||..+..
T Consensus 25 ~~~rqkle~qL~Enk~V~~Eldlle~ 50 (120)
T KOG3478|consen 25 VESRQKLETQLQENKIVLEELDLLEE 50 (120)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhcc
Confidence 34445666666666666666665543
No 245
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=91.67 E-value=3.5 Score=36.15 Aligned_cols=62 Identities=19% Similarity=0.274 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465 131 QAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKG 193 (312)
Q Consensus 131 q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk 193 (312)
.+..++..|...-.+|-.++..++.+|....+.. -.+.++..|..|++|+..+.+.++.-+.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~-t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEP-TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444445555555544322 3355667777777777777776665443
No 246
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=91.65 E-value=5.8 Score=36.81 Aligned_cols=19 Identities=37% Similarity=0.564 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021465 207 KNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 207 knL~~marEvekLrAEIan 225 (312)
..+.++.++++.|++||..
T Consensus 131 ~~~~~l~~e~erL~aeL~~ 149 (202)
T PF06818_consen 131 DELGSLRREVERLRAELQR 149 (202)
T ss_pred ccchhHHHHHHHHHHHHHH
Confidence 3467777888888888874
No 247
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=91.64 E-value=11 Score=34.67 Aligned_cols=41 Identities=7% Similarity=0.198 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhh
Q 021465 76 MREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKME 116 (312)
Q Consensus 76 L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~E 116 (312)
|+|-+.-..++|...+..+..+.+.+ +.++.++..++.+.+
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~ 72 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQ 72 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433 334444444444444
No 248
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=91.62 E-value=11 Score=34.76 Aligned_cols=67 Identities=19% Similarity=0.316 Sum_probs=48.6
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhh-hHHHHHHHHHHHHHH
Q 021465 69 LAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKA-GERLKKDLQQAHIEA 136 (312)
Q Consensus 69 La~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra-~e~lk~EL~q~r~e~ 136 (312)
|-.....-+.+++.++++|+.|.. +..++...|.+|..|.+...+++++..+ ...++....+.++.+
T Consensus 52 Lq~qLlq~~k~~~~l~~eLq~l~~-~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~EK~~L 119 (206)
T PF14988_consen 52 LQDQLLQKEKEQAKLQQELQALKE-FRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQEKARL 119 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566788889999999987 6889999999999999999999888643 233444444444443
No 249
>PRK10698 phage shock protein PspA; Provisional
Probab=91.60 E-value=11 Score=34.88 Aligned_cols=10 Identities=10% Similarity=-0.014 Sum_probs=3.6
Q ss_pred HHHHHHHhhh
Q 021465 105 IRVLLDKIAK 114 (312)
Q Consensus 105 iR~L~ek~~k 114 (312)
+..+...+.+
T Consensus 61 ~~~~~~~~~~ 70 (222)
T PRK10698 61 IEQAEAQQVE 70 (222)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 250
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.46 E-value=25 Score=38.61 Aligned_cols=86 Identities=28% Similarity=0.361 Sum_probs=40.7
Q ss_pred hhhhhchhhHHHHHHHHHhhh-hh---Hhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Q 021465 94 IRNIHTESDSHIRVLLDKIAK-ME---ADC-KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLP 168 (312)
Q Consensus 94 ~~~~~ae~e~qiR~L~ek~~k-~E---ael-ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~ 168 (312)
++.++-|+|..|.+.+-|..+ .| .+| .-+..+.+.|..+.+|.-.|...-++-..-+..+++...++.+ ++.
T Consensus 61 lr~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~---~~~ 137 (769)
T PF05911_consen 61 LRQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEA---EIE 137 (769)
T ss_pred HHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---HHH
Confidence 445677888888777655421 11 111 1122344466666666665555433333333344444333333 334
Q ss_pred hHHHHHHHHHHHHH
Q 021465 169 DLHAELDSLRQEHR 182 (312)
Q Consensus 169 alraELe~LrqElq 182 (312)
.+..-|+.+.+|.-
T Consensus 138 ~l~~~l~~~eken~ 151 (769)
T PF05911_consen 138 DLMARLESTEKENS 151 (769)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 251
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=91.45 E-value=13 Score=35.33 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHH
Q 021465 172 AELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEK 207 (312)
Q Consensus 172 aELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEk 207 (312)
.+++.+....+...+..+.........++...+|.+
T Consensus 218 ~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~ 253 (301)
T PF14362_consen 218 ARKARLDEARQAKVAEFQAIISANDGFLARLEALWE 253 (301)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHH
Confidence 334444444455555555555666777777766654
No 252
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.41 E-value=12 Score=39.89 Aligned_cols=134 Identities=19% Similarity=0.295 Sum_probs=78.0
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 70 AASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSK 149 (312)
Q Consensus 70 a~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~ae 149 (312)
-..+-.+|++|...|.|+.+|...+.+++- -..-.|.+- -.||+||...+-.-++|.+.=.+|-.+
T Consensus 113 eneLKq~r~el~~~q~E~erl~~~~sd~~e-----------~~~~~E~qR---~rlr~elKe~KfRE~RllseYSELEEE 178 (772)
T KOG0999|consen 113 ENELKQLRQELTNVQEENERLEKVHSDLKE-----------SNAAVEDQR---RRLRDELKEYKFREARLLSEYSELEEE 178 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------cchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666777777777766654444332 223333221 246777777776666677777777777
Q ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHH--hHHHH--HHHHHHHHHHHHHHH---HHHHH
Q 021465 150 IQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNID--NVEQL--QAMEKNLVGMAREME---KLHAE 222 (312)
Q Consensus 150 vq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~e--lleq~--qaMEknL~~marEve---kLrAE 222 (312)
--.|.+.+.-++. -+-|.++++.|+.|+-..+|+-+..-.+ .+..+ +.||.-|..+..|-+ .|+.|
T Consensus 179 NIsLQKqVs~LR~-------sQVEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkE 251 (772)
T KOG0999|consen 179 NISLQKQVSNLRQ-------SQVEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKE 251 (772)
T ss_pred cchHHHHHHHHhh-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 6666666666554 3367788888888888877775543322 22222 455555555555443 34555
Q ss_pred HH
Q 021465 223 VV 224 (312)
Q Consensus 223 Ia 224 (312)
+.
T Consensus 252 L~ 253 (772)
T KOG0999|consen 252 LS 253 (772)
T ss_pred HH
Confidence 54
No 253
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=91.40 E-value=24 Score=38.30 Aligned_cols=138 Identities=23% Similarity=0.287 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhh-hhhHHHHH
Q 021465 49 EDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADC-KAGERLKK 127 (312)
Q Consensus 49 E~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eael-ra~e~lk~ 127 (312)
-+-|.-|-.||+||-.+=+-|..+-..-+-.|.+.-.||.+|...-..-++|. -+|-...++.|.-- +.-|..+.
T Consensus 65 aelis~qlqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEa----e~Lraala~ae~~R~~lEE~~q~ 140 (739)
T PF07111_consen 65 AELISRQLQELRRLEEEVRALRETSLQQKMRLEAQAEELEALARAEKAGRAEA----EELRAALAGAEVVRKNLEEGSQR 140 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHhhHHHHHHhhHHHHHH
Confidence 35577788999999998888877754444567777778888865544444443 22333233333211 11245555
Q ss_pred HHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHH----HHhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021465 128 DLQQAH----IEAQSLARA----RQELTSKIQQASEALHKA----RLEVKNLPDLHAELDSLRQEHRRLRATFEY 190 (312)
Q Consensus 128 EL~q~r----~e~q~L~~~----rqeL~aevq~l~~EL~r~----kad~qql~alraELe~LrqElq~~RaaiE~ 190 (312)
||++++ .++..|... -..|..+++.|.+.|.-. -.+.++|.....|.|.|++++-..+..++.
T Consensus 141 ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~ 215 (739)
T PF07111_consen 141 ELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEA 215 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 665553 222222222 223444444444433211 123456666666777777666666665554
No 254
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.39 E-value=19 Score=40.86 Aligned_cols=160 Identities=16% Similarity=0.176 Sum_probs=85.0
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh--hHHHH-------HHHHHhhhhhHh---------hhhhHHHHHHHH
Q 021465 69 LAASHITMREDLAAAQQEIPRIKAHIRNIHTES--DSHIR-------VLLDKIAKMEAD---------CKAGERLKKDLQ 130 (312)
Q Consensus 69 La~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~--e~qiR-------~L~ek~~k~Eae---------lra~e~lk~EL~ 130 (312)
|......|+.++..|..+.+..-.-...|.+|+ ..+-+ -|-++-.+.-.+ =+.++.+..+|.
T Consensus 158 lK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els 237 (1141)
T KOG0018|consen 158 LKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELS 237 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHH
Confidence 455566777777777777776666666666665 11111 111111111100 022333444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHH-----------------HHHHHHHHHHHHHHHHHHHHHh
Q 021465 131 QAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLH-----------------AELDSLRQEHRRLRATFEYEKG 193 (312)
Q Consensus 131 q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alr-----------------aELe~LrqElq~~RaaiE~EKk 193 (312)
...+++.++......-..++...+++..+...+++++...- .+...++..+...+..++.-++
T Consensus 238 ~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~~kk 317 (1141)
T KOG0018|consen 238 RLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIETAKK 317 (1141)
T ss_pred HHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHHHHH
Confidence 55555555555444444444444444433333333332222 2223333555555666666677
Q ss_pred hcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 194 LNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEM 228 (312)
Q Consensus 194 ~~~elleq~qaMEknL~~marEvekLrAEIanaek 228 (312)
.+..+-+.++.+++.+.+...--+....||.+...
T Consensus 318 ~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q 352 (1141)
T KOG0018|consen 318 DYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ 352 (1141)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777888888888888877788888776544
No 255
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.30 E-value=16 Score=36.00 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIa 224 (312)
..+-|.++.|+.+=..|++.|.
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444444444444444433
No 256
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=91.20 E-value=0.061 Score=58.81 Aligned_cols=136 Identities=18% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cc
Q 021465 92 AHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVK----NL 167 (312)
Q Consensus 92 ~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~q----ql 167 (312)
.....+.+|.+.-.+.|.+.-.++-..-+....|...|..++..++.-...+..|..++..+..|+..++..+- ..
T Consensus 208 ~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k 287 (859)
T PF01576_consen 208 EQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAK 287 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 33333444444334444444333333334445556666666666666666777777777777777766654221 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL-QAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 168 ~alraELe~LrqElq~~RaaiE~EKk~~~elleq~-qaMEknL~~marEvekLrAEIanae 227 (312)
..+...|..+..|+...|+.++.+-..+.+.++.. +.+.+.|..+..+++.+++.+.+++
T Consensus 288 ~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~Le 348 (859)
T PF01576_consen 288 SELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLE 348 (859)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334445556677777777666666655555555 5667777777777777666666665
No 257
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=91.19 E-value=15 Score=39.57 Aligned_cols=61 Identities=21% Similarity=0.219 Sum_probs=36.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae 227 (312)
++..+++++..++.+...+...++.-++....++.++...+.+|..-. ..+++|.+|-|..
T Consensus 249 ~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i 309 (670)
T KOG0239|consen 249 ELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEI 309 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 444444555555555555555566666666667777777777777777 3344444444443
No 258
>PRK09343 prefoldin subunit beta; Provisional
Probab=91.19 E-value=4.6 Score=34.06 Aligned_cols=35 Identities=9% Similarity=0.224 Sum_probs=19.2
Q ss_pred HHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHH
Q 021465 104 HIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQS 138 (312)
Q Consensus 104 qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~ 138 (312)
++..+......+|+.++.++....||..+..+..-
T Consensus 22 ~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~V 56 (121)
T PRK09343 22 QLERLLQQKSQIDLELREINKALEELEKLPDDTPI 56 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchh
Confidence 34444445555566666666666666665544443
No 259
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.18 E-value=7 Score=36.76 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 128 DLQQAHIEAQSLARARQELTSKIQQASEALHKAR 161 (312)
Q Consensus 128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k 161 (312)
-|.+.+.|...|...|...+.+++.+.+|+....
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE 66 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLE 66 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555544444444
No 260
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=91.16 E-value=7.4 Score=35.53 Aligned_cols=90 Identities=22% Similarity=0.257 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHH
Q 021465 130 QQAHIEAQSLARARQ---ELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAME 206 (312)
Q Consensus 130 ~q~r~e~q~L~~~rq---eL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaME 206 (312)
.-++..+.+|++.+. .++.+...+.+.+....++.++++....+|+.-=-|+++..+. .-....++.
T Consensus 89 ~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~----------~~~~ke~~~ 158 (190)
T PF05266_consen 89 KFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAK----------LKEKKEAKD 158 (190)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 344555555555554 5556666666666666554444444444444333333333332 223345566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 021465 207 KNLVGMAREMEKLHAEVVNAEMR 229 (312)
Q Consensus 207 knL~~marEvekLrAEIanaekr 229 (312)
+.+.+|...+++|..++.+++-+
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888888877744
No 261
>PF14992 TMCO5: TMCO5 family
Probab=91.15 E-value=11 Score=36.53 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=17.6
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHH
Q 021465 57 AEIERLARDNHRLAASHITMREDLAAAQQEIPRI 90 (312)
Q Consensus 57 ~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L 90 (312)
.+.|+|...||-|---+.+-+..+.++..||-.+
T Consensus 11 ~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~ 44 (280)
T PF14992_consen 11 KDEQRLDEANQSLLQKIQEKEGAIQSLEREITKM 44 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666665544444444444444444444
No 262
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=91.12 E-value=15 Score=35.41 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHhHHH
Q 021465 172 AELDSLRQEHRRLRATFEYEKGLNIDNVEQ 201 (312)
Q Consensus 172 aELe~LrqElq~~RaaiE~EKk~~~elleq 201 (312)
+-|+..++|+++.+.++..-++-+-.-|++
T Consensus 197 ~KIekkk~ELER~qKRL~sLq~vRPAfmdE 226 (267)
T PF10234_consen 197 AKIEKKKQELERNQKRLQSLQSVRPAFMDE 226 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 334444444444444444444443333333
No 263
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.88 E-value=14 Score=34.74 Aligned_cols=22 Identities=18% Similarity=0.287 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021465 206 EKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 206 EknL~~marEvekLrAEIanae 227 (312)
+..-..+..++...+..+..+.
T Consensus 102 e~Ea~~lq~el~~ar~~~~~ak 123 (246)
T PF00769_consen 102 EEEAEELQEELEEAREDEEEAK 123 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433333
No 264
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=90.82 E-value=3.7 Score=38.45 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 170 LHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 170 lraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIa 224 (312)
++++++.|+.|++.....+|...+....+..|.+...+.++.+..+-++|+.+|.
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3355555555555555555555556666666666667777777777777777665
No 265
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.80 E-value=9.5 Score=38.12 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 104 HIRVLLDKIAKMEADC-KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR 161 (312)
Q Consensus 104 qiR~L~ek~~k~Eael-ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k 161 (312)
.+-.-.||+.+-|.-| .-.+.+-++..+++.++..+...-++++.-|..++++|++..
T Consensus 249 ~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Is 307 (359)
T PF10498_consen 249 DISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEIS 307 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444556666666555 445556666666666666666666666666666666666655
No 266
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=90.65 E-value=20 Score=37.76 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465 73 HITMREDLAAAQQEIPRIKAHIRNIHTES 101 (312)
Q Consensus 73 h~~L~qeL~aaq~Elq~L~~~~~~~~ae~ 101 (312)
.++|+..|-.+..|+-+|+.-.--+++|.
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et 189 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTET 189 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhh
Confidence 45666667777777777766555455444
No 267
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=90.56 E-value=6.3 Score=38.40 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=25.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH--------HHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFEY--------EKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE~--------EKk~~~elleq~qaMEknL~~marEvekLrAEIa 224 (312)
++-.++++++.+++.+...+..+.- ....+.++..+.+.-++.+.......++++.+..
T Consensus 243 ~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~ 309 (362)
T TIGR01010 243 QVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEAD 309 (362)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544443221 1112223333334444455555555555554433
No 268
>PRK10869 recombination and repair protein; Provisional
Probab=90.54 E-value=10 Score=39.64 Aligned_cols=101 Identities=10% Similarity=0.025 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021465 120 KAGERLKKDLQQAHIEAQSLAR---ARQELTSKIQQASEALHKARLEV-KNLPDLHAELDSLRQEHRRLRATFEYEKGLN 195 (312)
Q Consensus 120 ra~e~lk~EL~q~r~e~q~L~~---~rqeL~aevq~l~~EL~r~kad~-qql~alraELe~LrqElq~~RaaiE~EKk~~ 195 (312)
..++.+..+|+.+..++..... .|-+=+.+++.-...|.+++--- ..++.+.+-.+.+++|++.+...-+ ..
T Consensus 268 ~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~----~l 343 (553)
T PRK10869 268 DMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQED----DL 343 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHH----HH
Confidence 4445555556655555554333 22333344444444443333211 2455555666666666655444311 22
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 196 IDNVEQLQAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 196 ~elleq~qaMEknL~~marEvekLrAEIa 224 (312)
.++-.+.+..++.+...+.++-+.|.+.+
T Consensus 344 ~~Le~e~~~l~~~l~~~A~~LS~~R~~aA 372 (553)
T PRK10869 344 ETLALAVEKHHQQALETAQKLHQSRQRYA 372 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344445566666666666666665544
No 269
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=90.49 E-value=17 Score=40.92 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 021465 147 TSKIQQASEALHKARLEVKNLPDLHAELDSLR 178 (312)
Q Consensus 147 ~aevq~l~~EL~r~kad~qql~alraELe~Lr 178 (312)
...+..+++++.++..+.+.+...+.+|+..+
T Consensus 254 k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~ 285 (1072)
T KOG0979|consen 254 KQAKDRAKKELRKLEKEIKPIEDKKEELESEK 285 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHH
Confidence 33444555555555555555555555555533
No 270
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=90.42 E-value=0.08 Score=57.93 Aligned_cols=109 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH
Q 021465 120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV 199 (312)
Q Consensus 120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ell 199 (312)
+.++.|..+|+..+-.-..+...++.|-.++..+...|.... +........+..++..+..++..++.....+.+..
T Consensus 525 r~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n---~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~ 601 (859)
T PF01576_consen 525 RQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHAN---RANEEAQKQLKKLQAQLKDLQRELEEAQRAREELR 601 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 455556666655555555556666666666666655554433 34455556666777788888888888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465 200 EQLQAMEKNLVGMAREMEKLHAEVVNAEMRGH 231 (312)
Q Consensus 200 eq~qaMEknL~~marEvekLrAEIanaekra~ 231 (312)
++...+++.+..+..+++.++..+..++..-+
T Consensus 602 ~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk 633 (859)
T PF01576_consen 602 EQLAVSERRLRALQAELEELREALEQAERARK 633 (859)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888774433
No 271
>PRK09343 prefoldin subunit beta; Provisional
Probab=90.33 E-value=7.5 Score=32.80 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 200 EQLQAMEKNLVGMAREMEKLHAEVVNAEM 228 (312)
Q Consensus 200 eq~qaMEknL~~marEvekLrAEIanaek 228 (312)
..++.++++...+...+.+++..|..+-.
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777777777766543
No 272
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=90.28 E-value=11 Score=35.80 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021465 172 AELDSLRQEHRRLRATFE 189 (312)
Q Consensus 172 aELe~LrqElq~~RaaiE 189 (312)
.+++..+.++..+++.++
T Consensus 146 ~~~~~a~~~~~~a~~~l~ 163 (334)
T TIGR00998 146 EELDHARKALLSAKAALN 163 (334)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 273
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=90.28 E-value=6.6 Score=34.93 Aligned_cols=100 Identities=16% Similarity=0.264 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHH-hhhhhchhhHHHHHHHHHhhhhhHhhhhhHHH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAH-IRNIHTESDSHIRVLLDKIAKMEADCKAGERL 125 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~-~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~l 125 (312)
+|++|-..-...+..=...+..........++.|..++.|.+.+... ..++.+|. ..+..++|++|+ ..|
T Consensus 38 iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~-------~~~~~~~ea~L~--~~~ 108 (155)
T PRK06569 38 IFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEF-------LIKKKNLEQDLK--NSI 108 (155)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH--HHH
Confidence 77777766666665555555555666666677777777777777554 45555554 445556666655 445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 126 KKDLQQAHIEAQSLARARQELTSKIQQASEALH 158 (312)
Q Consensus 126 k~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~ 158 (312)
.++.......+. ..+.+...++-.+.-++.
T Consensus 109 ~~~~~~~~~~~~---~~~~~~~~~~i~~~~~i~ 138 (155)
T PRK06569 109 NQNIEDINLAAK---QFRTNKSEAIIKLAVNII 138 (155)
T ss_pred HHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH
Confidence 555555544444 345555666666666665
No 274
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=90.25 E-value=3.9 Score=37.11 Aligned_cols=18 Identities=11% Similarity=0.327 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021465 172 AELDSLRQEHRRLRATFE 189 (312)
Q Consensus 172 aELe~LrqElq~~RaaiE 189 (312)
..|+.+++++..++.++.
T Consensus 135 ~~i~~~~~~~~~~~~~an 152 (188)
T PF03962_consen 135 EKIEKLKEEIKIAKEAAN 152 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666666544
No 275
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.21 E-value=16 Score=34.36 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 021465 208 NLVGMAREMEKLHAE 222 (312)
Q Consensus 208 nL~~marEvekLrAE 222 (312)
.+..+..+|+++|.+
T Consensus 89 ey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 89 EYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444455555544
No 276
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=90.02 E-value=28 Score=36.63 Aligned_cols=123 Identities=17% Similarity=0.236 Sum_probs=69.8
Q ss_pred HHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh
Q 021465 90 IKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPD 169 (312)
Q Consensus 90 L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~a 169 (312)
|..-+..++.|.+--+|...+++...- +-+.+.+..++-.+.+|-..-.+|..+....+.++.-.=. .+-.+
T Consensus 381 L~~rL~e~~~e~~~~~r~~lekl~~~q------~e~~~~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kId--tE~k~ 452 (531)
T PF15450_consen 381 LNLRLSEAKNEWESDERKSLEKLDQWQ------NEMEKHLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKID--TEGKA 452 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhcc--HHHHH
Confidence 333344445555555555555554443 2234444455555555555555666666666666532111 12345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 170 LHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 170 lraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIa 224 (312)
..-+|..+|+|+-.+=+.+.+-+..+.. ..+.+|.-+|+ ...|-||.--|.
T Consensus 453 R~~eV~~vRqELa~lLssvQ~~~e~~~~--rkiaeiqg~l~--~~qi~kle~siq 503 (531)
T PF15450_consen 453 REREVGAVRQELATLLSSVQLLKEDNPG--RKIAEIQGKLA--TNQIMKLENSIQ 503 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChh--hhHHHHHHHHH--HHHHHHHHHHHH
Confidence 5578889999999888888887777755 22444555555 556666665555
No 277
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=90.01 E-value=12 Score=35.55 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 021465 200 EQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAP 233 (312)
Q Consensus 200 eq~qaMEknL~~marEvekLrAEIanaekra~a~ 233 (312)
.++...+.++......++..+..+.+.. -+|+
T Consensus 179 ~~~~~~~~~~~~~~~~l~~a~~~l~~~~--i~AP 210 (327)
T TIGR02971 179 TDVDLAQAEVKSALEAVQQAEALLELTY--VKAP 210 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCE--EECC
Confidence 3445566677777777777777777653 5553
No 278
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=89.99 E-value=33 Score=37.39 Aligned_cols=34 Identities=9% Similarity=0.201 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhHHHHHHhh---hhhchhhHHHHHHH
Q 021465 76 MREDLAAAQQEIPRIKAHIR---NIHTESDSHIRVLL 109 (312)
Q Consensus 76 L~qeL~aaq~Elq~L~~~~~---~~~ae~e~qiR~L~ 109 (312)
++.+|..+--||++-++-+. ..+..+|.++-+|-
T Consensus 375 ~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~ 411 (786)
T PF05483_consen 375 NEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELK 411 (786)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHH
Confidence 33445555555555444333 34455555554443
No 279
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=89.99 E-value=39 Score=38.66 Aligned_cols=28 Identities=4% Similarity=0.055 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHHHhhh
Q 021465 69 LAASHITMREDLAAAQQEIPRIKAHIRN 96 (312)
Q Consensus 69 La~th~~L~qeL~aaq~Elq~L~~~~~~ 96 (312)
.......+++.+..+-.+++.++..+.+
T Consensus 63 ~~~~~~~~~~~i~~ap~~~~~~~~~l~~ 90 (1109)
T PRK10929 63 SLERAKQYQQVIDNFPKLSAELRQQLNN 90 (1109)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3333444444444444444444444443
No 280
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=89.70 E-value=14 Score=37.91 Aligned_cols=151 Identities=13% Similarity=0.217 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhH-----hh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 77 REDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEA-----DC-KAGERLKKDLQQAHIEAQSLARARQELTSKI 150 (312)
Q Consensus 77 ~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Ea-----el-ra~e~lk~EL~q~r~e~q~L~~~rqeL~aev 150 (312)
..++..+++||..|+......+.+-..-|-.+-+|+.++=. .. ...--+-..-..+..+.++|+..=.+|-.-|
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~V 229 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLV 229 (424)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777666666666666666655322 10 0011122222334455556666666666666
Q ss_pred HHHHHHHHH--HHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH-----------HHHHHHHHHHHHHHHHHH
Q 021465 151 QQASEALHK--ARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV-----------EQLQAMEKNLVGMAREME 217 (312)
Q Consensus 151 q~l~~EL~r--~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ell-----------eq~qaMEknL~~marEve 217 (312)
..|++|+.. .+-..++|+.+..+|+.+.+++......|..+|-.-.... +.+...+.-+..+....+
T Consensus 230 E~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl~ 309 (424)
T PF03915_consen 230 EDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDLK 309 (424)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666632 2333467788888888888888888877776554332222 222445556666666677
Q ss_pred HHHHHHHHHH
Q 021465 218 KLHAEVVNAE 227 (312)
Q Consensus 218 kLrAEIanae 227 (312)
++..-+...+
T Consensus 310 k~~etf~lve 319 (424)
T PF03915_consen 310 KASETFALVE 319 (424)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766666555
No 281
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.53 E-value=23 Score=35.02 Aligned_cols=87 Identities=16% Similarity=0.277 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc----hhHHHHHHHHHHHHHHHHHHHHHHHhhc-------HHhHHHHHHHHHHH
Q 021465 141 RARQELTSKIQQASEALHKARLEVKNL----PDLHAELDSLRQEHRRLRATFEYEKGLN-------IDNVEQLQAMEKNL 209 (312)
Q Consensus 141 ~~rqeL~aevq~l~~EL~r~kad~qql----~alraELe~LrqElq~~RaaiE~EKk~~-------~elleq~qaMEknL 209 (312)
..|..|+.++..++......+-|++.+ +++..|.|..+...+|+-..+-|-.++. -.++.+-+-....|
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl 205 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERL 205 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHH
Confidence 456667777777777776666666554 4444455666666666666655544442 22333335566666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021465 210 VGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 210 ~~marEvekLrAEIanae 227 (312)
.....|.+=++.-|..+.
T Consensus 206 ~q~qeE~~l~k~~i~KYK 223 (319)
T PF09789_consen 206 KQLQEEKELLKQTINKYK 223 (319)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666666554
No 282
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=89.49 E-value=8.3 Score=31.83 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHh
Q 021465 120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDN 198 (312)
Q Consensus 120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~el 198 (312)
.+.-.+..+|..++.+.-.+....++|+.+++.++++...... -+.++.+|+.+++++...|.....-|.-...+
T Consensus 10 ~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~----~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q~l 84 (106)
T PF05837_consen 10 QESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE----DEELSEKLEKLEKELKKSRQRWRVMKNVFQAL 84 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777888888888888888887655442 56788889999999988888777666554433
No 283
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.42 E-value=4.1 Score=42.15 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=14.0
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465 59 IERLARDNHRLAASHITMREDLAAAQQEIPRIKA 92 (312)
Q Consensus 59 i~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~ 92 (312)
+..|..|=--..+|.-.|--.+.....+|+.|..
T Consensus 47 ~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~ 80 (472)
T TIGR03752 47 LKALGIEGDTPADTLRTLVAEVKELRKRLAKLIS 80 (472)
T ss_pred hHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 3445444444444443333333333333443333
No 284
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=89.41 E-value=11 Score=36.44 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=37.1
Q ss_pred HhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Q 021465 111 KIAKMEADCKAGERLKKDLQQAHIEAQSLARA------RQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRL 184 (312)
Q Consensus 111 k~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~------rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~ 184 (312)
+..+|.+.|..++.++=+|.=+|.-+..+... .+....+.+...+.|...+. +++.+..++....+++...
T Consensus 150 dl~e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~---ELe~~~EeL~~~Eke~~e~ 226 (269)
T PF05278_consen 150 DLKEMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKE---ELEELEEELKQKEKEVKEI 226 (269)
T ss_pred HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34455555565665555555555444443333 33344444444444544443 4444455555555555555
Q ss_pred HHHH
Q 021465 185 RATF 188 (312)
Q Consensus 185 Raai 188 (312)
+..|
T Consensus 227 ~~~i 230 (269)
T PF05278_consen 227 KERI 230 (269)
T ss_pred HHHH
Confidence 5554
No 285
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=89.37 E-value=15 Score=32.74 Aligned_cols=114 Identities=25% Similarity=0.295 Sum_probs=55.5
Q ss_pred HhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHH
Q 021465 60 ERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSL 139 (312)
Q Consensus 60 ~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L 139 (312)
++..-.+++|-+.+..++++|..+..++-.-........ ..++...+++.. .+....++. =.+...+
T Consensus 11 ~rr~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~----~~l~~~~~ri~~---m~~gg~~f~------i~~~~~~ 77 (158)
T PF09486_consen 11 QRRRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAAR----QRLRAHDARIDA---MMTGGAPFS------IDEYLAL 77 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHH---HHcCCCCcc------HHHHHHH
Confidence 334444556666666666666666555544433211111 112222222222 222222222 1344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Q 021465 140 ARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFE 189 (312)
Q Consensus 140 ~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE 189 (312)
...+..|..++..+..++.+++. .+.....+|..++..|-+.++.|+
T Consensus 78 ~~~r~~l~~~~~~~e~~~a~l~~---~l~~~~~~ia~~~raIarn~a~id 124 (158)
T PF09486_consen 78 RRYRDVLEERVRAAEAELAALRQ---ALRAAEDEIAATRRAIARNDARID 124 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhHH
Confidence 55666666667777777666664 555555566666666655555433
No 286
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=89.27 E-value=4.5 Score=33.27 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=24.3
Q ss_pred HHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 021465 104 HIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARA 142 (312)
Q Consensus 104 qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~ 142 (312)
++..+..+...+|.+++.++.+..+|..+..+..-+...
T Consensus 18 ~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~V 56 (110)
T TIGR02338 18 QLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSV 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHh
Confidence 455555566667777777777777777765444444333
No 287
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=89.18 E-value=6.9 Score=32.18 Aligned_cols=22 Identities=5% Similarity=0.332 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIa 224 (312)
+..++++..+...+.+++..|.
T Consensus 84 ~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 84 KTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555544444
No 288
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.17 E-value=14 Score=38.18 Aligned_cols=10 Identities=40% Similarity=0.733 Sum_probs=5.6
Q ss_pred hhhHHHHHHH
Q 021465 46 PLLEDKIAVQ 55 (312)
Q Consensus 46 p~lE~~l~~q 55 (312)
|+|-..|..|
T Consensus 324 ~ll~sqleSq 333 (493)
T KOG0804|consen 324 PLLTSQLESQ 333 (493)
T ss_pred hhhhhhhhHH
Confidence 3555555555
No 289
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=89.14 E-value=14 Score=40.62 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=7.8
Q ss_pred HHHHHhhhhhhhh
Q 021465 56 AAEIERLARDNHR 68 (312)
Q Consensus 56 ~~Ei~~L~~dNqr 68 (312)
.-||+||+.|=..
T Consensus 355 DsE~qRLitEvE~ 367 (861)
T PF15254_consen 355 DSEVQRLITEVEA 367 (861)
T ss_pred hHHHHHHHHHHHH
Confidence 4567777666433
No 290
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=89.08 E-value=15 Score=37.95 Aligned_cols=51 Identities=8% Similarity=0.099 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhhcHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465 179 QEHRRLRATFEYEKGLNIDNVEQL--------QAMEKNLVGMAREMEKLHAEVVNAEMR 229 (312)
Q Consensus 179 qElq~~RaaiE~EKk~~~elleq~--------qaMEknL~~marEvekLrAEIanaekr 229 (312)
+++..++..+|.-||.+...+.-+ +....++.+....+.++.+.+....-|
T Consensus 361 kql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~R 419 (575)
T KOG4403|consen 361 KQLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHR 419 (575)
T ss_pred HHHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777666655544332 666777777777777777777655444
No 291
>PRK10869 recombination and repair protein; Provisional
Probab=89.08 E-value=32 Score=36.06 Aligned_cols=72 Identities=8% Similarity=0.024 Sum_probs=33.3
Q ss_pred hhHHHHH--HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhh-----hhchhhHHHHHHHHHhhhhhHh
Q 021465 47 LLEDKIA--VQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRN-----IHTESDSHIRVLLDKIAKMEAD 118 (312)
Q Consensus 47 ~lE~~l~--~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~-----~~ae~e~qiR~L~ek~~k~Eae 118 (312)
+|+.-.. ....+.+.+-..=+.+...+..++.+-...++++.-|+-.+.. ++...+.++..-..+....|..
T Consensus 145 lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i 223 (553)
T PRK10869 145 LLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQL 223 (553)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 6664332 3444444444444444444444444444444444444444333 3344455555555555444433
No 292
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=89.03 E-value=21 Score=34.45 Aligned_cols=25 Identities=4% Similarity=0.033 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIanae 227 (312)
...+..+.....+++..+..+.++.
T Consensus 186 ~~~~a~~~~~~a~l~~a~~~l~~~~ 210 (346)
T PRK10476 186 DALVAQRAAREAALAIAELHLEDTT 210 (346)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcCE
Confidence 3344445555566666666665543
No 293
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=88.98 E-value=3.4 Score=37.51 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 168 ~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
..+.++++.|++++..+++.++.-.+...+.++++
T Consensus 106 ~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~ 140 (188)
T PF03962_consen 106 EELLEELEELKKELKELKKELEKYSENDPEKIEKL 140 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34456666666666666666554444444444444
No 294
>PRK10698 phage shock protein PspA; Provisional
Probab=88.85 E-value=20 Score=33.32 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=41.1
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHHH-HhhhhhchhhHHHHH-------HHHHhhhhhHhh----hhhHHHHHHHHHHHHHH
Q 021465 69 LAASHITMREDLAAAQQEIPRIKA-HIRNIHTESDSHIRV-------LLDKIAKMEADC----KAGERLKKDLQQAHIEA 136 (312)
Q Consensus 69 La~th~~L~qeL~aaq~Elq~L~~-~~~~~~ae~e~qiR~-------L~ek~~k~Eael----ra~e~lk~EL~q~r~e~ 136 (312)
+-++...+++.+..++..+..... ....|++-.|---|+ ..+++..++.++ ..++.|+..+.+++..+
T Consensus 50 ~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki 129 (222)
T PRK10698 50 ALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKL 129 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666655532 223444444444444 444444444443 22334455555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021465 137 QSLARARQELTSKIQQA 153 (312)
Q Consensus 137 q~L~~~rqeL~aevq~l 153 (312)
+++-+-+..|.+..+..
T Consensus 130 ~eak~k~~~L~aR~~~A 146 (222)
T PRK10698 130 SETRARQQALMLRHQAA 146 (222)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555544443
No 295
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=88.84 E-value=39 Score=36.77 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 021465 217 EKLHAEVVNAE 227 (312)
Q Consensus 217 ekLrAEIanae 227 (312)
.+|..|+....
T Consensus 604 ~rleEE~e~L~ 614 (698)
T KOG0978|consen 604 KRLEEELERLK 614 (698)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 296
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=88.81 E-value=33 Score=35.79 Aligned_cols=71 Identities=25% Similarity=0.313 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHH
Q 021465 134 IEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNL 209 (312)
Q Consensus 134 ~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL 209 (312)
.|+.+-.+.+.+=+..+|.++.+|+++-. --|.-|+.|-+..-||+..++..|..-.|.+ +++.|.+...+
T Consensus 449 lEmdk~LskKeeeverLQ~lkgelEkat~--SALdlLkrEKe~~EqefLslqeEfQk~eken---l~ERqkLKs~l 519 (527)
T PF15066_consen 449 LEMDKTLSKKEEEVERLQQLKGELEKATT--SALDLLKREKETREQEFLSLQEEFQKHEKEN---LEERQKLKSRL 519 (527)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHH
Confidence 55566666666666677777777776653 3566677777777777777777765544443 44444433333
No 297
>PRK11546 zraP zinc resistance protein; Provisional
Probab=88.77 E-value=6.4 Score=34.67 Aligned_cols=43 Identities=26% Similarity=0.318 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Q 021465 142 ARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRL 184 (312)
Q Consensus 142 ~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~ 184 (312)
.|++|.++-..|+..+.....|-+.|.++..||..|++.+...
T Consensus 66 LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 66 LRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333344333444444444444433333
No 298
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=88.69 E-value=11 Score=41.28 Aligned_cols=8 Identities=13% Similarity=0.202 Sum_probs=3.5
Q ss_pred CCCCCCCC
Q 021465 255 GVYVDGYS 262 (312)
Q Consensus 255 ~~y~~~Yg 262 (312)
..|-.+||
T Consensus 630 ~V~v~~~~ 637 (771)
T TIGR01069 630 KVRIRYFG 637 (771)
T ss_pred EEEEccCC
Confidence 33444444
No 299
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=88.68 E-value=7.1 Score=34.37 Aligned_cols=46 Identities=15% Similarity=0.263 Sum_probs=36.8
Q ss_pred HHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021465 186 ATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGH 231 (312)
Q Consensus 186 aaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanaekra~ 231 (312)
.++++-+|...++-...+.|+.+|..+.+.+..|+.++.....+..
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~ 139 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777799999999999999999999988776543
No 300
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.67 E-value=44 Score=37.13 Aligned_cols=31 Identities=10% Similarity=0.133 Sum_probs=15.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhh
Q 021465 67 HRLAASHITMREDLAAAQQEIPRIKAHIRNI 97 (312)
Q Consensus 67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~ 97 (312)
+++-.+...|+|.....+.|...|.+.+...
T Consensus 667 ~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 667 RELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554444443
No 301
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=88.66 E-value=2.5 Score=44.86 Aligned_cols=66 Identities=20% Similarity=0.353 Sum_probs=53.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465 119 CKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT 187 (312)
Q Consensus 119 lra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa 187 (312)
.|-.+.+.-||-++...-|+|.+.-.++-.++..++++|.+++. +|.+|+-+|++.+..+.+++++
T Consensus 85 ~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~---eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 85 KRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQL---ELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH---HHHHHHhHHHHHHHHHHHHHhh
Confidence 34446677788888888888888888888888889999888885 7788888888888888887775
No 302
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=88.49 E-value=25 Score=37.75 Aligned_cols=134 Identities=18% Similarity=0.218 Sum_probs=65.9
Q ss_pred HHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 82 AAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR 161 (312)
Q Consensus 82 aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k 161 (312)
..+.||+++-..|. ++++.|..-..+.|.+.. ....-.++.-|+...+.++.|...+..|..+.+.++..|.+.-
T Consensus 264 ~~~~~i~~~~~~id-~~~D~e~lr~~l~d~s~~----~~~lpsv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~ 338 (632)
T PF14817_consen 264 RRKAEIRSETESID-VRADAEYLRNQLEDVSDE----SQALPSVHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLL 338 (632)
T ss_pred HHHHHHHHHHhhcc-chhhHHHhhhccCCCCCC----ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455665433322 444444444445553332 2344455555566666666666666666666666666654332
Q ss_pred H-------hc---------ccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 162 L-------EV---------KNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 162 a-------d~---------qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIa 224 (312)
. +. .++-.+++.++.|+.+.+.+...+.. +.+.+..++.-.+++.....-+......|.
T Consensus 339 ~e~~~~~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~~~~----r~e~~~~Lq~K~q~I~~frqlv~e~QeqIr 413 (632)
T PF14817_consen 339 EEIERRLSGSSEREALALELEVAGLKASLNALRSECQRLKEAAAE----RQEALRSLQAKWQRILDFRQLVSEKQEQIR 413 (632)
T ss_pred HHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 11 12234556666666666655554443 223334444444444444444444444443
No 303
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=88.47 E-value=15 Score=35.97 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=77.8
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh-------------hHHHHHHHHHhhhhhHhhhh
Q 021465 55 QAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES-------------DSHIRVLLDKIAKMEADCKA 121 (312)
Q Consensus 55 q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~-------------e~qiR~L~ek~~k~Eaelra 121 (312)
-.+.|..--.+|+.|.+..++|.+.++.++-+..-++.++...+.++ |+|-|- |+..++ .+
T Consensus 88 Laa~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrr--deanfi----c~ 161 (389)
T KOG4687|consen 88 LAADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRR--DEANFI----CA 161 (389)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhH--HHHHHH----HH
Confidence 34556666778999999999999999999999999999888766554 444432 333333 35
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL 162 (312)
Q Consensus 122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka 162 (312)
.|.||+.-.++-.|++.+.-.+.+|+.+-..++....|+.-
T Consensus 162 ~EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLnh 202 (389)
T KOG4687|consen 162 HEGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNH 202 (389)
T ss_pred HHHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhh
Confidence 67788888888888888888888888888887777776654
No 304
>PRK11519 tyrosine kinase; Provisional
Probab=88.47 E-value=10 Score=40.77 Aligned_cols=17 Identities=6% Similarity=0.196 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKL 219 (312)
Q Consensus 203 qaMEknL~~marEvekL 219 (312)
+.-++.+..+....+++
T Consensus 380 ~~~~~lY~~lL~r~~e~ 396 (719)
T PRK11519 380 ESGQQVYMQLLNKQQEL 396 (719)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 305
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=88.43 E-value=11 Score=29.98 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021465 207 KNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 207 knL~~marEvekLrAEIan 225 (312)
.++..+...+.+|+.-+.-
T Consensus 79 ~q~~~l~~~l~~l~~~~~~ 97 (127)
T smart00502 79 QQLESLTQKQEKLSHAINF 97 (127)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333334444333333
No 306
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=88.38 E-value=9.1 Score=39.48 Aligned_cols=19 Identities=37% Similarity=0.323 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHA 221 (312)
Q Consensus 203 qaMEknL~~marEvekLrA 221 (312)
|.-||.|..-....|||+.
T Consensus 357 qnaekql~~Ake~~eklkK 375 (575)
T KOG4403|consen 357 QNAEKQLKEAKEMAEKLKK 375 (575)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5556666666666666654
No 307
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=88.34 E-value=9.2 Score=31.32 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 201 QLQAMEKNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 201 q~qaMEknL~~marEvekLrAEIan 225 (312)
++..+++++..+..++.+|+..|..
T Consensus 102 ~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 102 QIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355566666666666666655543
No 308
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=88.32 E-value=33 Score=39.15 Aligned_cols=160 Identities=18% Similarity=0.202 Sum_probs=81.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh-----------hHHHHHHHHHhhhh--hHhhhhhHHHHHHHHHH
Q 021465 66 NHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES-----------DSHIRVLLDKIAKM--EADCKAGERLKKDLQQA 132 (312)
Q Consensus 66 NqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~-----------e~qiR~L~ek~~k~--Eaelra~e~lk~EL~q~ 132 (312)
++--.++....=-.|..+|+||.-|+.--.++.... |.|++.+-.|.... ..-.+.+.+|..|.=.-
T Consensus 1119 k~~~l~~ikK~ia~lnnlqqElklLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PKn 1198 (1439)
T PF12252_consen 1119 KLDNLDSIKKAIANLNNLQQELKLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPKN 1198 (1439)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCc
Confidence 333334444444566777777777766444333333 33444433333211 11111222222211112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------ccchhHHHHHHHHHHHHHH-----H--------HHHHHHHHh
Q 021465 133 HIEAQSLARARQELTSKIQQASEALHKARLEV------KNLPDLHAELDSLRQEHRR-----L--------RATFEYEKG 193 (312)
Q Consensus 133 r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~------qql~alraELe~LrqElq~-----~--------RaaiE~EKk 193 (312)
-.++.+..+.=.+-++++..+++|--|..... -.|..|+..|+.+.|=+.. . ..+|+.+++
T Consensus 1199 ltdvK~missf~d~laeiE~LrnErIKkHGaSkePLDlSDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme~~tf~~q~~ 1278 (1439)
T PF12252_consen 1199 LTDVKSMISSFNDRLAEIEFLRNERIKKHGASKEPLDLSDLDKLKGQLQKINQNLVKALINTIRVSLNQMEVKTFEEQEK 1278 (1439)
T ss_pred hhhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 24666666666777778888888765544332 2334444444444332211 1 234666777
Q ss_pred hcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 194 LNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNA 226 (312)
Q Consensus 194 ~~~elleq~qaMEknL~~marEvekLrAEIana 226 (312)
.-+.+++.+..+++.|+.-. -.+|++.+|...
T Consensus 1279 eiq~n~~ll~~L~~tlD~S~-~a~Kqk~di~kl 1310 (1439)
T PF12252_consen 1279 EIQQNLQLLDKLEKTLDDSD-TAQKQKEDIVKL 1310 (1439)
T ss_pred HHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHH
Confidence 77778888888888877643 356666666654
No 309
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=88.22 E-value=22 Score=33.00 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 171 HAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 171 raELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
..+++.++.-+..++.+++.-+..|...+..+
T Consensus 152 ~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l 183 (239)
T cd07647 152 PKEAEKLKKKAAQCKTSAEEADSAYKSSIGCL 183 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888777777777777776666
No 310
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=88.19 E-value=2.3 Score=31.86 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021465 146 LTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEY 190 (312)
Q Consensus 146 L~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~ 190 (312)
|..+|+.|...+.++.. .+..++.++...+.|..|+-.+|+.
T Consensus 8 Ls~dVq~L~~kvdqLs~---dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSS---DVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444443 3344446666777777777776653
No 311
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=88.14 E-value=33 Score=38.25 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=42.1
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHH-------HHhhhhhHhhhh
Q 021465 54 VQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLL-------DKIAKMEADCKA 121 (312)
Q Consensus 54 ~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~-------ek~~k~Eaelra 121 (312)
++.+-++.|-.+|+-+..+++.++++|.+.-.|++.|.+. |..++|-++-++. +-.+|+|-++-+
T Consensus 992 a~aRh~kefE~~mrdhrselEe~kKe~eaiineiee~eae---IiQekE~el~e~efka~d~Sd~r~kie~efAa 1063 (1424)
T KOG4572|consen 992 AFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEELEAE---IIQEKEGELIEDEFKALDESDPRAKIEDEFAA 1063 (1424)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHH---HHhcccchHHHHHhhhccccCcchhHHHHHHH
Confidence 3444466777788888888888888888888888888664 4455544444332 444555544433
No 312
>PRK11546 zraP zinc resistance protein; Provisional
Probab=88.09 E-value=1.4 Score=38.83 Aligned_cols=13 Identities=23% Similarity=0.521 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHH
Q 021465 174 LDSLRQEHRRLRA 186 (312)
Q Consensus 174 Le~LrqElq~~Ra 186 (312)
|.+|.+|+..+|.
T Consensus 91 I~aL~kEI~~Lr~ 103 (143)
T PRK11546 91 INAVAKEMENLRQ 103 (143)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 313
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=88.08 E-value=6.9 Score=38.14 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 021465 174 LDSLRQEHRRLRATFEYEKG 193 (312)
Q Consensus 174 Le~LrqElq~~RaaiE~EKk 193 (312)
+..++.++..++..+..|.+
T Consensus 244 v~~l~~~i~~l~~~i~~e~~ 263 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDEQRN 263 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554443
No 314
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=88.08 E-value=4.3 Score=35.83 Aligned_cols=62 Identities=13% Similarity=0.414 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Q 021465 128 DLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFE 189 (312)
Q Consensus 128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE 189 (312)
++...+.++.++...+..|-.++....+.|..++..+..++.|+++|+.|+.+.......++
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e 75 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYE 75 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666777788888888888888888887777778888888888877765444433
No 315
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=87.87 E-value=42 Score=35.99 Aligned_cols=54 Identities=26% Similarity=0.383 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 169 DLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 169 alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIan 225 (312)
..-.+|..|..++++.+++.-.+.... -.|+++.++.+.+...++++|+.++.+
T Consensus 289 ~kd~~i~~L~~di~~~~~S~~~e~e~~---~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 289 QKDSEIAQLSNDIERLEASLVEEREKH---KAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344667777778888887765554443 445566666666666666666666553
No 316
>PRK11281 hypothetical protein; Provisional
Probab=87.83 E-value=57 Score=37.42 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=15.2
Q ss_pred HHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 191 EKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 191 EKk~~~elleq~qaMEknL~~marEvekLrAEIan 225 (312)
|...|.++.+.+....+++.++.++-.+.+..+.+
T Consensus 283 ~~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~ 317 (1113)
T PRK11281 283 ELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDR 317 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333
No 317
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.78 E-value=31 Score=36.63 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 167 LPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 167 l~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIa 224 (312)
++.+-+-.+.++.|++.+...-+... .+-.+++.+..++...++.+-+.|...+
T Consensus 320 ~~~l~~~~~~~~~el~~L~~~~~~~~----~Le~~~~~l~~~~~~~A~~Ls~~R~~~A 373 (557)
T COG0497 320 IEDLLEYLDKIKEELAQLDNSEESLE----ALEKEVKKLKAELLEAAEALSAIRKKAA 373 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666665555422111 1222334555555555555555555544
No 318
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=87.77 E-value=16 Score=31.08 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHH-hHHHH
Q 021465 127 KDLQQAHIEAQSLARARQELTSKIQQ---ASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNID-NVEQL 202 (312)
Q Consensus 127 ~EL~q~r~e~q~L~~~rqeL~aevq~---l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~e-lleq~ 202 (312)
..+++++-++.++...|+.|..+++. ...||+....|...- .+ -.---++||+..+|+.+.. +.+ .-.++
T Consensus 12 ~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VY-Kl-iGpvLvkqel~EAr~nV~k----RlefI~~Ei 85 (120)
T KOG3478|consen 12 NKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVY-KL-IGPVLVKQELEEARTNVGK----RLEFISKEI 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHH-HH-hcchhhHHHHHHHHhhHHH----HHHHHHHHH
Confidence 35666677888888888888877764 445666655544211 00 0012356888888887653 222 22345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021465 203 QAMEKNLVGMAREMEKLHAEVVNAEMRG 230 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIanaekra 230 (312)
+..|.++-.+.++.+|.|..|.++.+.+
T Consensus 86 kr~e~~i~d~q~e~~k~R~~v~k~Q~~~ 113 (120)
T KOG3478|consen 86 KRLENQIRDSQEEFEKQREAVIKLQQAA 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999988654
No 319
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=87.71 E-value=16 Score=35.28 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL 162 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka 162 (312)
..+..++++.+..+.++.+--..|-++++.-+.||+|.+.
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qK 211 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQK 211 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555553
No 320
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=87.69 E-value=30 Score=34.04 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=14.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 196 IDNVEQLQAMEKNLVGMAREMEKLHAEV 223 (312)
Q Consensus 196 ~elleq~qaMEknL~~marEvekLrAEI 223 (312)
.-+.+|+...+.++.++.-++-..|.-|
T Consensus 147 e~LsQqLskaesK~nsLe~elh~trdaL 174 (305)
T PF14915_consen 147 EILSQQLSKAESKFNSLEIELHHTRDAL 174 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554444433
No 321
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.43 E-value=24 Score=36.50 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 128 DLQQAHIEAQSLARARQELTSKIQQASEALHKAR 161 (312)
Q Consensus 128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k 161 (312)
|+.+++.+...+.+.++-+....+.+...+.+..
T Consensus 362 e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~ 395 (493)
T KOG0804|consen 362 EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQ 395 (493)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444443
No 322
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=87.29 E-value=7.5 Score=30.25 Aligned_cols=55 Identities=20% Similarity=0.254 Sum_probs=27.7
Q ss_pred hhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 97 IHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR 161 (312)
Q Consensus 97 ~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k 161 (312)
.=+|+|.+|..|.+.+.++. ..-.+...-|.+|.+.-.++-.++..++..++...
T Consensus 6 ~l~EKDe~Ia~L~eEGekLS----------k~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLS----------KKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677778877777764443 22233334444444444444444444444444433
No 323
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=87.29 E-value=32 Score=34.85 Aligned_cols=23 Identities=35% Similarity=0.306 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021465 205 MEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 205 MEknL~~marEvekLrAEIanae 227 (312)
.||.+.+...|.+.|||++.+.+
T Consensus 243 vek~i~EfdiEre~LRAel~ree 265 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREE 265 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555554433
No 324
>COG5293 Predicted ATPase [General function prediction only]
Probab=87.15 E-value=31 Score=36.08 Aligned_cols=74 Identities=24% Similarity=0.267 Sum_probs=47.6
Q ss_pred HHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 85 QEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL 162 (312)
Q Consensus 85 ~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka 162 (312)
+.+.++.++.+.+-.++ --=|-+++.+++++|.++++-+++|-.-+++.=.+...+ ...++++.+..+.-+.+.
T Consensus 320 k~~e~v~~F~r~~~e~R---~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~-g~~e~y~~l~ee~~~~~~ 393 (591)
T COG5293 320 KDFEHVIAFNRAITEER---HDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNR-GVFEKYQTLCEEIIALRG 393 (591)
T ss_pred HhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHhh
Confidence 34444444444444433 233568889999999888888888888887766655544 345667777666665555
No 325
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.08 E-value=6.6 Score=34.44 Aligned_cols=65 Identities=17% Similarity=0.335 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465 122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT 187 (312)
Q Consensus 122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa 187 (312)
...|..++.+++.++..|...-..|.+++..+...+.-.... .++..++.+++.|...++.+|..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~-~~i~~l~~e~~~l~~kL~~l~~~ 138 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELR-EEIEELEEEIEELEEKLEKLRSG 138 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666777777777777777777888888888777322221 27788888888888888888875
No 326
>PLN02939 transferase, transferring glycosyl groups
Probab=87.07 E-value=55 Score=37.04 Aligned_cols=100 Identities=18% Similarity=0.242 Sum_probs=52.5
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhHhhhhhHHHHHHH-----
Q 021465 58 EIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEADCKAGERLKKDL----- 129 (312)
Q Consensus 58 Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Eaelra~e~lk~EL----- 129 (312)
|+..|-.+|-.|..+...|+.+|....+-= ..+..+.-|+ +.-+|+|+-|..-.-+++..+.+|+-|.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (977)
T PLN02939 227 ELDVLKEENMLLKDDIQFLKAELIEVAETE----ERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKV 302 (977)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHH
Confidence 344455566666666666665555433211 1222233333 7778888888777766766666665554
Q ss_pred HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 130 QQAHIEAQ----------SLARARQELTSKIQQASEALHKAR 161 (312)
Q Consensus 130 ~q~r~e~q----------~L~~~rqeL~aevq~l~~EL~r~k 161 (312)
+-++.-+. -+..+.++|..+|..+..-|+...
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (977)
T PLN02939 303 ENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEAN 344 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 11111111 123455666666666666665443
No 327
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=86.93 E-value=11 Score=39.01 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 021465 146 LTSKIQQASEALHKAR 161 (312)
Q Consensus 146 L~aevq~l~~EL~r~k 161 (312)
|+++++.++++|+.+.
T Consensus 64 lva~~k~~r~~~~~l~ 79 (472)
T TIGR03752 64 LVAEVKELRKRLAKLI 79 (472)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 328
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=86.90 E-value=18 Score=30.54 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 126 KKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 126 k~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
..+|+..+.....|..++.+|.+-++.|+.+-.-.. .-+..|+.++..++..++.+|-.+.++-..+
T Consensus 22 e~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~----------qr~~eLqaki~ea~~~le~eK~ak~~l~~r~ 88 (107)
T PF09304_consen 22 ERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRN----------QRIAELQAKIDEARRNLEDEKQAKLELESRL 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666655555443322 3444555555555555555554443433333
No 329
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=86.78 E-value=27 Score=32.53 Aligned_cols=60 Identities=27% Similarity=0.345 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHH
Q 021465 142 ARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQ 203 (312)
Q Consensus 142 ~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~q 203 (312)
..+.|..++..+...++..+.+ ....-..=+..|.....+++..|+.|+..+...+..+.
T Consensus 122 ~~~~l~~~l~~l~~~~~~Er~~--R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~ 181 (247)
T PF06705_consen 122 LNQELVRELNELQEAFENERNE--REEREENILKRLEEEENRLQEKIEKEKNTRESKLSELR 181 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555554431 11112223356667777888888888888777777773
No 330
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=86.77 E-value=15 Score=29.69 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=26.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREME 217 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEve 217 (312)
+.=+.....+.|..|+..++.-+ ..+.+.+++++.+|+++++.-.+.+
T Consensus 46 kyfa~mr~~d~l~~e~k~L~~~~----~Ks~~~i~~L~~~E~~~~~~l~~~E 93 (96)
T PF08647_consen 46 KYFAAMRSKDALDNEMKKLNTQL----SKSSELIEQLKETEKEFVRKLKNLE 93 (96)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444555555555555532 3345566777777777766655544
No 331
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=86.67 E-value=40 Score=35.67 Aligned_cols=100 Identities=18% Similarity=0.303 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhchh--------hHHHHHHHHHhhhhhHhhhh--hHHHHHHHHHHHHHHHHH---
Q 021465 73 HITMREDLAAAQQEIPRIKAHIRNIHTES--------DSHIRVLLDKIAKMEADCKA--GERLKKDLQQAHIEAQSL--- 139 (312)
Q Consensus 73 h~~L~qeL~aaq~Elq~L~~~~~~~~ae~--------e~qiR~L~ek~~k~Eaelra--~e~lk~EL~q~r~e~q~L--- 139 (312)
...++++|-. +|+.|..-.+++..+. |.++-.|.++..++...+.. .+....++...+-+++.|
T Consensus 220 ~~e~~~~lP~---ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~ 296 (570)
T COG4477 220 LAELQTELPG---QLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDL 296 (570)
T ss_pred HHHHHhhchH---HHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3344444443 3455555555555444 66777777777776665543 234445555555444443
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 021465 140 ----ARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLR 178 (312)
Q Consensus 140 ----~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~Lr 178 (312)
..+++........++..|.+.+. ....|+.|++.++
T Consensus 297 lE~EveA~~~V~~~~~~l~~~l~k~ke---~n~~L~~Eie~V~ 336 (570)
T COG4477 297 LEREVEAKNVVEENLPILPDYLEKAKE---NNEHLKEEIERVK 336 (570)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHH---HHHHHHHHHHHHH
Confidence 34455555555566666666665 3455555555554
No 332
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.65 E-value=23 Score=33.69 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=17.2
Q ss_pred HHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHH
Q 021465 106 RVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLAR 141 (312)
Q Consensus 106 R~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~ 141 (312)
+.+.+-..++--...+.+.|++.|.+...++++...
T Consensus 44 nS~~efar~lS~~~~e~e~l~~~l~etene~~~~ne 79 (246)
T KOG4657|consen 44 NSLVEFARALSQSQVELENLKADLRETENELVKVNE 79 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334433444445555555555555555443
No 333
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=86.57 E-value=6 Score=40.71 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 200 EQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 200 eq~qaMEknL~~marEvekLrAEIanae 227 (312)
.+....++.+..+.+++++|+.+|....
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445556666666666677777666554
No 334
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=86.51 E-value=25 Score=33.63 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=14.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465 67 HRLAASHITMREDLAAAQQEIPRIKA 92 (312)
Q Consensus 67 qrLa~th~~L~qeL~aaq~Elq~L~~ 92 (312)
..+.......+..+..++.+++.+..
T Consensus 77 ~~~~~~l~~~~a~l~~~~~~l~~~~~ 102 (331)
T PRK03598 77 APYENALMQAKANVSVAQAQLDLMLA 102 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344444555666666666665543
No 335
>PF14992 TMCO5: TMCO5 family
Probab=86.47 E-value=12 Score=36.44 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=24.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhh
Q 021465 62 LARDNHRLAASHITMREDLAAAQQEIPRIKAHIR 95 (312)
Q Consensus 62 L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~ 95 (312)
|..|=|+|......|=+.+..+...+|+|..-|.
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit 42 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREIT 42 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888888888888888888765554
No 336
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=86.45 E-value=31 Score=32.87 Aligned_cols=30 Identities=17% Similarity=0.354 Sum_probs=17.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhHHHH
Q 021465 62 LARDNHRLAASHITMREDLAAAQQEIPRIK 91 (312)
Q Consensus 62 L~~dNqrLa~th~~L~qeL~aaq~Elq~L~ 91 (312)
|..+..+++..|..|.+.|...-.+|..+.
T Consensus 72 ~~~e~e~~a~~H~~la~~L~~~~~~l~~~~ 101 (269)
T cd07673 72 FKTSTEKLANCHLELVRKLQELIKEVQKYG 101 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777755444554444
No 337
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.39 E-value=31 Score=32.81 Aligned_cols=90 Identities=11% Similarity=0.209 Sum_probs=50.1
Q ss_pred hHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021465 87 IPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKN 166 (312)
Q Consensus 87 lq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qq 166 (312)
|+.+.+.+....+..+.++..+.+.- .+.|| |..-.=.=++.+...|..+..++...+..+.+.++|.
T Consensus 112 L~~~a~~~d~~~~~~~~~~~~l~~~f---------~~~Lk-eyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr-- 179 (243)
T cd07666 112 LKGMASCIDRCCKATDKRMKGLSEQL---------LPVIH-EYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADR-- 179 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--
Confidence 44555555555555555555555521 13344 2222333344556666677777778888887777643
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 021465 167 LPDLHAELDSLRQEHRRLRATFE 189 (312)
Q Consensus 167 l~alraELe~LrqElq~~RaaiE 189 (312)
..+.+|++.+....+.+-..+.
T Consensus 180 -~~~~~ev~~~e~kve~a~~~~k 201 (243)
T cd07666 180 -DLLKEEIEKLEDKVECANNALK 201 (243)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555544433
No 338
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=86.18 E-value=55 Score=38.02 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=14.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465 65 DNHRLAASHITMREDLAAAQQEIPRIKA 92 (312)
Q Consensus 65 dNqrLa~th~~L~qeL~aaq~Elq~L~~ 92 (312)
+++.+....--++.+|.-...||+.+..
T Consensus 734 ~~~l~~~~i~e~~~~l~~~~~el~~~~~ 761 (1294)
T KOG0962|consen 734 IIKLIDKEIPELEKELQEVYEELGDLSE 761 (1294)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhhhh
Confidence 4444444555555555555555555544
No 339
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=86.15 E-value=33 Score=33.67 Aligned_cols=62 Identities=21% Similarity=0.334 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHH
Q 021465 125 LKKDLQQAHIEAQSLARARQELTSKIQQAS-----EALHKARLEVKNLPDLHAELDSLRQEHRRLRATFE 189 (312)
Q Consensus 125 lk~EL~q~r~e~q~L~~~rqeL~aevq~l~-----~EL~r~kad~qql~alraELe~LrqElq~~RaaiE 189 (312)
+-+..+|+|.++..|...-.++.++++.|. ..+.+.+. .|++.+..|+.+++++..++..|+
T Consensus 39 ~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~---si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 39 FYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEE---SIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777766543 33445543 667777777777777777776663
No 340
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=86.04 E-value=17 Score=34.30 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=13.6
Q ss_pred HHHHhhhhhHhhhhhHHHHHHHHHHH
Q 021465 108 LLDKIAKMEADCKAGERLKKDLQQAH 133 (312)
Q Consensus 108 L~ek~~k~Eaelra~e~lk~EL~q~r 133 (312)
|.+|-.+++.++...+..+.+.++.+
T Consensus 34 l~eR~~~I~~~l~~Ae~~~~eA~~~~ 59 (250)
T PRK14474 34 MKKRQQRIANRWQDAEQRQQEAGQEA 59 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555444
No 341
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=85.99 E-value=15 Score=28.78 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465 76 MREDLAAAQQEIPRIKAHIRNIHTES 101 (312)
Q Consensus 76 L~qeL~aaq~Elq~L~~~~~~~~ae~ 101 (312)
.++.|+.++.++......+..+....
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~ 28 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQER 28 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665555444444333
No 342
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=85.76 E-value=64 Score=37.52 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHH----------HHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021465 74 ITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLL----------DKIAKMEADCKAGERLKKDLQQAHIEAQSLARAR 143 (312)
Q Consensus 74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~----------ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~r 143 (312)
..++.+....++++..++..+-.++-+...+.|.+- +...+++.-|...+.+..++..+..++..+.+-.
T Consensus 822 ~E~~~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~ 901 (1294)
T KOG0962|consen 822 DELRKEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKV 901 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555554444333322 2223334445555566666777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021465 144 QELTSKIQQASEALHKARL 162 (312)
Q Consensus 144 qeL~aevq~l~~EL~r~ka 162 (312)
+++.+.++-+..+|....+
T Consensus 902 ~e~~~~~~~~~~~l~e~~s 920 (1294)
T KOG0962|consen 902 KELLERIQPLKVELEEAQS 920 (1294)
T ss_pred HhhHhhhcchhhhHHHHHH
Confidence 7777777777777766555
No 343
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=85.73 E-value=25 Score=31.13 Aligned_cols=86 Identities=13% Similarity=0.173 Sum_probs=37.9
Q ss_pred HHHhhhhhHhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465 109 LDKIAKMEADCKAGERLKKDLQQAHIEA-QSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT 187 (312)
Q Consensus 109 ~ek~~k~Eaelra~e~lk~EL~q~r~e~-q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa 187 (312)
.+|..++..++...+..+.+.+....+. ++|...+++-..-+...+.+-.+.+. ..+...+.+.+ +-+..++..
T Consensus 48 ~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~--~~~~~A~~ea~---~~~~~A~~~ 122 (173)
T PRK13453 48 DKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQE--QIIHEANVRAN---GMIETAQSE 122 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHHHHHHH
Confidence 3444445555555555555555554443 23333444433334444444433333 12222223332 334445566
Q ss_pred HHHHHhhcHHhH
Q 021465 188 FEYEKGLNIDNV 199 (312)
Q Consensus 188 iE~EKk~~~ell 199 (312)
|+.|++.....+
T Consensus 123 I~~ek~~a~~~l 134 (173)
T PRK13453 123 INSQKERAIADI 134 (173)
T ss_pred HHHHHHHHHHHH
Confidence 666655544443
No 344
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=85.35 E-value=5.9 Score=40.06 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 198 NVEQLQAMEKNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 198 lleq~qaMEknL~~marEvekLrAEIan 225 (312)
+.++++.+.+.+..+..++..++.++..
T Consensus 74 l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 74 IKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555666666666666654
No 345
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=85.25 E-value=9.3 Score=39.33 Aligned_cols=17 Identities=12% Similarity=0.413 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhHHHHH
Q 021465 76 MREDLAAAQQEIPRIKA 92 (312)
Q Consensus 76 L~qeL~aaq~Elq~L~~ 92 (312)
|+++|..++.++.++..
T Consensus 76 l~~~l~~l~~~~~~~~~ 92 (525)
T TIGR02231 76 LRKQIRELEAELRDLED 92 (525)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 346
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=85.16 E-value=19 Score=29.26 Aligned_cols=28 Identities=14% Similarity=0.300 Sum_probs=13.8
Q ss_pred HHHHHHHhhhhhHhhhhhHHHHHHHHHH
Q 021465 105 IRVLLDKIAKMEADCKAGERLKKDLQQA 132 (312)
Q Consensus 105 iR~L~ek~~k~Eaelra~e~lk~EL~q~ 132 (312)
+..|..+...+|.+++.++.+..||..+
T Consensus 15 ~~~l~~~~~~l~~~~~E~~~v~~EL~~l 42 (105)
T cd00632 15 LQAYIVQRQKVEAQLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334444444555555555555555544
No 347
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.16 E-value=9.8 Score=29.60 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=27.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLH 220 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLr 220 (312)
+|..|+.|-+.|.+.-...+..|..-++...++-.++..+.+.+.....+++.|+
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666665566665554444444444444444443333333333333
No 348
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=85.10 E-value=5 Score=34.92 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 021465 143 RQELTSKIQQASEALHKARLEV 164 (312)
Q Consensus 143 rqeL~aevq~l~~EL~r~kad~ 164 (312)
+.+|..=++.+.+.|+..+...
T Consensus 121 d~el~~l~~ql~~hl~s~~~n~ 142 (160)
T PF13094_consen 121 DEELLPLLKQLNKHLESMQNNL 142 (160)
T ss_pred hHHHHHHHHHHHHHHHHHHccH
Confidence 4455555555555555555443
No 349
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=85.06 E-value=8.3 Score=35.60 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Q 021465 150 IQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLR 185 (312)
Q Consensus 150 vq~l~~EL~r~kad~qql~alraELe~LrqElq~~R 185 (312)
+..++.||.-++. |+..|..-|..-++||+.+|
T Consensus 162 l~~v~~Dl~~ie~---QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 162 LKSVREDLDTIEE---QVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 4566666666664 66666666666666666554
No 350
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=85.00 E-value=17 Score=35.58 Aligned_cols=90 Identities=14% Similarity=0.248 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHH
Q 021465 121 AGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVE 200 (312)
Q Consensus 121 a~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elle 200 (312)
+...||.+|.++.-.-++-....-.|-.+-..+.-++.-++. .|+.+...+-.+++|+. +...
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd---~lee~eE~~~~~~re~~--------------eK~~ 140 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKD---KLEELEETLAQLQREYR--------------EKIR 140 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--------------HHHH
Confidence 445567777777776666555544444444444444433332 22222233333333332 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 201 QLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 201 q~qaMEknL~~marEvekLrAEIanae 227 (312)
.+..+...++.+..++..|+.+|...+
T Consensus 141 elEr~K~~~d~L~~e~~~Lre~L~~rd 167 (302)
T PF09738_consen 141 ELERQKRAHDSLREELDELREQLKQRD 167 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666777777777777776543
No 351
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=84.99 E-value=37 Score=34.63 Aligned_cols=42 Identities=33% Similarity=0.539 Sum_probs=28.8
Q ss_pred Cch-hhHHHHH----HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 021465 44 PLP-LLEDKIA----VQAAEIERLARDNHRLAASHITMREDLAAAQQ 85 (312)
Q Consensus 44 p~p-~lE~~l~----~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~ 85 (312)
.+| ++..|.+ .-...|.+...||-+|-.+-..+++.|.+.|+
T Consensus 274 ~lP~~m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qe 320 (442)
T PF06637_consen 274 HLPKIMTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQE 320 (442)
T ss_pred hchHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 356 6555554 44556888888888888877777777777654
No 352
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=84.78 E-value=15 Score=36.14 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL 162 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka 162 (312)
.+|-.|+..|++|+-.|+..||.-..++..++.--.+...
T Consensus 203 vaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~MsE 242 (302)
T PF07139_consen 203 VALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMSE 242 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCH
Confidence 5677899999999999999999888888887776555544
No 353
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=84.73 E-value=52 Score=33.97 Aligned_cols=80 Identities=15% Similarity=0.197 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccc-------cccccCCC
Q 021465 203 QAMEKNLVGMAREMEKLHAEVVN-AEMRGHAPNPYSRTYTNPIPSYPPSVQGGGVYVDGYSQPLL-------QMGVVQTG 274 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIan-aekra~a~~~y~~~~~n~~~~~~~~~~g~~~y~~~Yg~~~~-------~~~~~~~~ 274 (312)
++.+..+.=-..+.+||++.+-- +--..|-.+.+|.--+=-=++++..+++-.-.+..+|...- ..+.--..
T Consensus 249 ~Sle~q~~~s~~qldkL~ktNv~n~~F~I~~~G~fgtIN~FRLG~lp~~pVew~EINAA~GQ~vLLL~~l~~kig~~~~~ 328 (447)
T KOG2751|consen 249 DSLEAQIEYSQAQLDKLRKTNVFNATFHIWHDGEFGTINNFRLGRLPSVPVEWDEINAAWGQTVLLLHTLANKIGLNFVR 328 (447)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhheeeEeecccccccccceeccccCCCcCHHHHHHHhhhHHHHHHHHHHhcCcccce
Confidence 44444444444466666665432 11222223455554332233344333333334444443211 23334455
Q ss_pred CCCCCCCC
Q 021465 275 EGMIPYGS 282 (312)
Q Consensus 275 ~~~~p~~~ 282 (312)
|-..||+|
T Consensus 329 y~lvp~Gs 336 (447)
T KOG2751|consen 329 YRLVPMGS 336 (447)
T ss_pred eeeecccc
Confidence 66667765
No 354
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=84.68 E-value=51 Score=33.89 Aligned_cols=148 Identities=21% Similarity=0.362 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHh-hhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 77 REDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEAD-CKA-GERLKKDLQQAHIEAQSLARARQELTSKIQQAS 154 (312)
Q Consensus 77 ~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eae-lra-~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~ 154 (312)
.++|.++++||-.|++......++-..-|-.+.+|+.++-.- +.. ..+=|.-++.-+ .+|....+.|+++|..|.
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k---~kL~~~Sd~lltkVDDLQ 230 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSK---KKLSEDSDSLLTKVDDLQ 230 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhH---HHHHHHHHHHHHHHHHHH
Confidence 478888888888888888887777777777777777666331 111 112222222222 224444445555555544
Q ss_pred HHHHHHHHhc---------ccchhHHHHHHHHHHHHHHHHHHHHHHHhh-----------cHHhHHHHHHHHHHHHHHHH
Q 021465 155 EALHKARLEV---------KNLPDLHAELDSLRQEHRRLRATFEYEKGL-----------NIDNVEQLQAMEKNLVGMAR 214 (312)
Q Consensus 155 ~EL~r~kad~---------qql~alraELe~LrqElq~~RaaiE~EKk~-----------~~elleq~qaMEknL~~mar 214 (312)
.-++.++.|+ +||+.+..+|+..++++.....-|..||=. --+--+.+.-+|.-+..+..
T Consensus 231 D~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQedL~~DL~d 310 (426)
T smart00806 231 DIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQEDLIADLKE 310 (426)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443 678899999999999999988887765422 22222233445555566666
Q ss_pred HHHHHHHHHHHHH
Q 021465 215 EMEKLHAEVVNAE 227 (312)
Q Consensus 215 EvekLrAEIanae 227 (312)
.++|+..-....+
T Consensus 311 DL~ka~eTf~lVe 323 (426)
T smart00806 311 DLEKAEETFDLVE 323 (426)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666655
No 355
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=84.68 E-value=18 Score=28.69 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL 162 (312)
Q Consensus 122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka 162 (312)
++.+|+|...+-.++..+...+.++-.++....+|++..+.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~ 46 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQ 46 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888888888887775
No 356
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=84.56 E-value=31 Score=31.29 Aligned_cols=143 Identities=18% Similarity=0.222 Sum_probs=68.7
Q ss_pred HHHHHHHHHhHHHHHHhhhhhchhhH---HHHHHHHHhh------------hhhHh-hhhhHHHHHHHHHHHHHHHHHHH
Q 021465 78 EDLAAAQQEIPRIKAHIRNIHTESDS---HIRVLLDKIA------------KMEAD-CKAGERLKKDLQQAHIEAQSLAR 141 (312)
Q Consensus 78 qeL~aaq~Elq~L~~~~~~~~ae~e~---qiR~L~ek~~------------k~Eae-lra~e~lk~EL~q~r~e~q~L~~ 141 (312)
+.|.+.+++-++....+.++++.-.. .+.+|..+.. ..+.+ .-.++.+-.-|++.+....+|..
T Consensus 2 rrl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~q 81 (182)
T PF15035_consen 2 RRLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQ 81 (182)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHH
Confidence 34556666666666666666655322 2222222221 01111 12333344566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 142 ARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHA 221 (312)
Q Consensus 142 ~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrA 221 (312)
....|-.++...+..-..+.. .|..+..+.+.++.|+......+..|...+..-+ ..=...|..+=+++..||.
T Consensus 82 vN~lLReQLEq~~~~N~~L~~---dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~---~~eh~rll~LWr~v~~lRr 155 (182)
T PF15035_consen 82 VNALLREQLEQARKANEALQE---DLQKLTQDWERLRDELEQKEAEWREEEENFNQYL---SSEHSRLLSLWREVVALRR 155 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cccccHHHHHHHHHHHHHH
Confidence 665555555544444444443 2233444455555555555544433333332222 2223445566667777766
Q ss_pred HHHHH
Q 021465 222 EVVNA 226 (312)
Q Consensus 222 EIana 226 (312)
..+.+
T Consensus 156 ~f~el 160 (182)
T PF15035_consen 156 QFAEL 160 (182)
T ss_pred HHHHH
Confidence 66544
No 357
>PRK12705 hypothetical protein; Provisional
Probab=84.54 E-value=57 Score=34.26 Aligned_cols=8 Identities=25% Similarity=0.223 Sum_probs=3.0
Q ss_pred HHHHhHHH
Q 021465 83 AQQEIPRI 90 (312)
Q Consensus 83 aq~Elq~L 90 (312)
+++|+..+
T Consensus 57 ~~~~~~~~ 64 (508)
T PRK12705 57 AKELLLRE 64 (508)
T ss_pred HHHHHHHH
Confidence 33333333
No 358
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=84.46 E-value=11 Score=36.72 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=41.0
Q ss_pred HHHHHHhhhhhHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 106 RVLLDKIAKMEADC-KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR 161 (312)
Q Consensus 106 R~L~ek~~k~Eael-ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k 161 (312)
|.+....+.=||.| .-+|.-|.||++.|..+.+|.++|=--+.++....++|.+.-
T Consensus 125 ~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly 181 (338)
T KOG3647|consen 125 RAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLY 181 (338)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 33444444444554 345778889999999999999999999999888888887654
No 359
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=84.32 E-value=20 Score=38.59 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 198 NVEQLQAMEKNLVGMAREMEKLHA 221 (312)
Q Consensus 198 lleq~qaMEknL~~marEvekLrA 221 (312)
.+.++-..++.+.++.|+.+-.+.
T Consensus 361 ~~~~~p~~e~~~~~L~R~~~~~~~ 384 (726)
T PRK09841 361 RVSAMPSTQQEVLRLSRDVEAGRA 384 (726)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555444443
No 360
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=84.29 E-value=11 Score=41.21 Aligned_cols=11 Identities=27% Similarity=0.172 Sum_probs=5.4
Q ss_pred CCCCCCCCCCc
Q 021465 253 GGGVYVDGYSQ 263 (312)
Q Consensus 253 g~~~y~~~Yg~ 263 (312)
|-..|--+||.
T Consensus 640 Gd~V~v~~~~~ 650 (782)
T PRK00409 640 GDEVKYLSLGQ 650 (782)
T ss_pred CCEEEEccCCc
Confidence 34445555554
No 361
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=84.20 E-value=20 Score=28.87 Aligned_cols=32 Identities=6% Similarity=0.221 Sum_probs=21.8
Q ss_pred hcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 194 LNIDNVEQLQAMEKNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 194 ~~~elleq~qaMEknL~~marEvekLrAEIan 225 (312)
...++.++++.+.+.+..+..++..+..++..
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777777666654
No 362
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.16 E-value=6.4 Score=36.24 Aligned_cols=62 Identities=21% Similarity=0.285 Sum_probs=48.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae 227 (312)
.+..|..+|+.++|.+-.++..||..|..+.+--+.-.++++.+.++..+++-||.++++.+
T Consensus 82 ~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 82 VLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677888888888888888888888776655556888888888888888888888654
No 363
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=84.16 E-value=0.32 Score=50.43 Aligned_cols=79 Identities=23% Similarity=0.448 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhhhhHHHHH---HHHHHHHHHhHHHHHH-----------hhhhhchhhHHHHHHHHHhhhhhHhhhhh
Q 021465 57 AEIERLARDNHRLAASHITMR---EDLAAAQQEIPRIKAH-----------IRNIHTESDSHIRVLLDKIAKMEADCKAG 122 (312)
Q Consensus 57 ~Ei~~L~~dNqrLa~th~~L~---qeL~aaq~Elq~L~~~-----------~~~~~ae~e~qiR~L~ek~~k~Eaelra~ 122 (312)
.||..|= +||..+|-+|+ ++|-...+..++|... +...+-|||.|||.++++.+-+|.|||
T Consensus 376 qEI~~Lk---ErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELr-- 450 (495)
T PF12004_consen 376 QEIQSLK---ERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELR-- 450 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhh--
Confidence 4776665 67777776664 3566666666666332 347788999999999999999985543
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTS 148 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~a 148 (312)
..+.+.+.++..+|.++.
T Consensus 451 --------re~~~m~~~~~~kqrii~ 468 (495)
T PF12004_consen 451 --------REHAEMQAVLDHKQRIID 468 (495)
T ss_dssp --------------------------
T ss_pred --------hhHHHHhcccccchHHHH
Confidence 334555555555555543
No 364
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=84.11 E-value=5.3 Score=36.16 Aligned_cols=62 Identities=15% Similarity=0.293 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHH
Q 021465 76 MREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLA 140 (312)
Q Consensus 76 L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~ 140 (312)
.+|||+.+ ..+|.+.....++|-+.+|++|..++.+||.-.+....||.....+..++..|.
T Consensus 103 VqqeL~~t---f~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~ 164 (171)
T PF04799_consen 103 VQQELSST---FARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQ 164 (171)
T ss_dssp -------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666655 456666777777788888888888888888777777777776666666666654
No 365
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=84.05 E-value=37 Score=37.61 Aligned_cols=87 Identities=13% Similarity=0.165 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhh-hhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 75 TMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIA-KMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQA 153 (312)
Q Consensus 75 ~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~-k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l 153 (312)
-+...+...++.|+-+...+.+.+++....--+...... -+..++..++.+++.|.+...+++.+...+-.|....+.+
T Consensus 19 ~~~~~~~~~~~~l~~lq~~~~~~~~~~~~~a~~~~~~~~~~i~qe~~~n~~Lsq~L~~~~~r~n~~~~dd~~l~~l~~ql 98 (835)
T COG3264 19 LLTAESAQLEAALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQALNQQTERLNALASDDRQLANLLLQL 98 (835)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhcccccccchhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 334445555555555555444444333111111111111 3445566667777777777777766666664554444444
Q ss_pred HHHHHHHH
Q 021465 154 SEALHKAR 161 (312)
Q Consensus 154 ~~EL~r~k 161 (312)
.+-...++
T Consensus 99 ~q~~r~i~ 106 (835)
T COG3264 99 LQSSRTIR 106 (835)
T ss_pred HHHHHHHH
Confidence 44333333
No 366
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.96 E-value=76 Score=35.25 Aligned_cols=23 Identities=13% Similarity=0.420 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021465 202 LQAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 202 ~qaMEknL~~marEvekLrAEIa 224 (312)
.+-+.|.+++...++.+|+.+|-
T Consensus 778 r~~LqkrIDa~na~Lrrl~~~Ii 800 (1104)
T COG4913 778 RRQLQKRIDAVNARLRRLREEII 800 (1104)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHH
Confidence 35555666666666666666655
No 367
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=83.87 E-value=32 Score=31.78 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=7.7
Q ss_pred HHHHHHHHHhHHHHHH
Q 021465 78 EDLAAAQQEIPRIKAH 93 (312)
Q Consensus 78 qeL~aaq~Elq~L~~~ 93 (312)
|...-+.-||++..-.
T Consensus 96 Qt~~LA~~eirR~~Le 111 (192)
T PF11180_consen 96 QTARLADVEIRRAQLE 111 (192)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444566655443
No 368
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=83.79 E-value=54 Score=33.40 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021465 172 AELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLH 220 (312)
Q Consensus 172 aELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLr 220 (312)
.||..||+||.-....++|.--+++ +.+..+|.+....|.||+
T Consensus 276 ~Ei~~LKqeLa~~EEK~~Yqs~eRa------Rdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 276 NEIYNLKQELASMEEKMAYQSYERA------RDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHH
Confidence 7888888888888777777654444 334444555555555555
No 369
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=83.67 E-value=39 Score=31.73 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 132 AHIEAQSLARARQELTSKIQQASEALHKARLEVKNL---------PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 132 ~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql---------~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
+...+.++......+..++...++.-++...+...+ -..-.|++.++.-+.+++..++.-.+.|..-+..+
T Consensus 105 ~e~~~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l 184 (240)
T cd07672 105 IELIMDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQEKLFAKLAQSKQNAEDADRLYMQNISVL 184 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444444333211110 01124566666677777776666666666666555
Q ss_pred ----HHHHHHHHHHHHHHHHHHHH
Q 021465 203 ----QAMEKNLVGMAREMEKLHAE 222 (312)
Q Consensus 203 ----qaMEknL~~marEvekLrAE 222 (312)
...++++...-...+.|+.|
T Consensus 185 ~~~~~~w~~~~~~~c~~fq~lEee 208 (240)
T cd07672 185 DKIREDWQKEHVKACEFFEKQECE 208 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666566656555544
No 370
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=83.53 E-value=32 Score=30.63 Aligned_cols=32 Identities=13% Similarity=0.329 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTSKIQQAS 154 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~ 154 (312)
+.++.+-..+...+..|.+..+.|..+++.+.
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~ 116 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLS 116 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444444444444444444444444443333
No 371
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.52 E-value=30 Score=30.25 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL 162 (312)
Q Consensus 120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka 162 (312)
.-.++|+ +....=.-++.+...|..+..+++.+.+.|.+.++
T Consensus 90 ~~~e~L~-~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~ 131 (218)
T cd07596 90 KLLEPLK-EYLRYCQAVKETLDDRADALLTLQSLKKDLASKKA 131 (218)
T ss_pred HHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555 33343455677788888888888888888888776
No 372
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=83.40 E-value=60 Score=33.65 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=8.5
Q ss_pred HHHHHhhcHHhHHHH
Q 021465 188 FEYEKGLNIDNVEQL 202 (312)
Q Consensus 188 iE~EKk~~~elleq~ 202 (312)
|+.+|++..++++.+
T Consensus 365 fq~ekeatqELieel 379 (502)
T KOG0982|consen 365 FQEEKEATQELIEEL 379 (502)
T ss_pred HHHhhHHHHHHHHHH
Confidence 555555555555555
No 373
>PRK11820 hypothetical protein; Provisional
Probab=83.36 E-value=46 Score=32.30 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 204 AMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 204 aMEknL~~marEvekLrAEIanae 227 (312)
.+.+--++|..++||+|.+|+|.|
T Consensus 265 ~is~~vVe~K~elEkiREQVQNIE 288 (288)
T PRK11820 265 EITNLVVELKVLIEQMREQVQNIE 288 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 355566788889999999999854
No 374
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=83.29 E-value=11 Score=29.74 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 021465 147 TSKIQQASEALHKAR 161 (312)
Q Consensus 147 ~aevq~l~~EL~r~k 161 (312)
..+++.++.++....
T Consensus 4 ~~~~~~l~~~l~~~~ 18 (106)
T PF01920_consen 4 QNKFQELNQQLQQLE 18 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333433333333
No 375
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=83.27 E-value=33 Score=30.65 Aligned_cols=30 Identities=23% Similarity=0.292 Sum_probs=15.1
Q ss_pred HHHHhhhhhHhhhhhHHHHHHHHHHHHHHH
Q 021465 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQ 137 (312)
Q Consensus 108 L~ek~~k~Eaelra~e~lk~EL~q~r~e~q 137 (312)
|.+|..+++.++...+.++.+++++..+.+
T Consensus 60 l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye 89 (181)
T PRK13454 60 LAERQGTITNDLAAAEELKQKAVEAEKAYN 89 (181)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555554443
No 376
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=82.94 E-value=14 Score=28.50 Aligned_cols=64 Identities=20% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHH
Q 021465 128 DLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEK 207 (312)
Q Consensus 128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEk 207 (312)
+|.++...+..|....+.|-.+-..|+.++...+ .|-..|....+.+|+.||. .+..+++||+
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~----------~ER~~L~ekne~Ar~rvEa-------mI~RLk~leq 63 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWR----------EERAQLLEKNEQARQKVEA-------MITRLKALEQ 63 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH-------HHHhhhhhcc
Q ss_pred H
Q 021465 208 N 208 (312)
Q Consensus 208 n 208 (312)
+
T Consensus 64 ~ 64 (65)
T TIGR02449 64 H 64 (65)
T ss_pred C
No 377
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=82.90 E-value=39 Score=31.10 Aligned_cols=117 Identities=11% Similarity=0.158 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 74 ITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQA 153 (312)
Q Consensus 74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l 153 (312)
..|+..+.....|+..+...+..+...-.. .+++...++= ..+++.......++.++....+.....+...
T Consensus 56 gsl~~a~~~i~~e~e~~a~~H~~~a~~L~~---~v~~~l~~~~------~~~~~~rK~~~~~~~k~~k~~~~~~~~l~Ka 126 (236)
T cd07651 56 GGLKNSLDTLRLETESMAKSHLKFAKQIRQ---DLEEKLAAFA------SSYTQKRKKIQSHMEKLLKKKQDQEKYLEKA 126 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666555443333322211 1222222221 2233444445566677777777777777777
Q ss_pred HHHHHHHHHhcccchhHH--------HHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 154 SEALHKARLEVKNLPDLH--------AELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 154 ~~EL~r~kad~qql~alr--------aELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
++....... +++.++ .+++.++..+.+++..+..-++.+...+..+
T Consensus 127 K~~Y~~~c~---~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~ 180 (236)
T cd07651 127 REKYEADCS---KINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKAL 180 (236)
T ss_pred HHHHHHHHH---hHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766664 233333 4566677777777766666666666666666
No 378
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=82.71 E-value=40 Score=32.79 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 204 AMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 204 aMEknL~~marEvekLrAEIanae 227 (312)
...+--+.|..++||+|.+|+|.|
T Consensus 268 ~is~~vVe~K~eiEkiREQVQNIE 291 (291)
T TIGR00255 268 DITNLAVEMKVLIEKIKEQIQNIE 291 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345556778889999999999854
No 379
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=82.69 E-value=37 Score=31.67 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=14.2
Q ss_pred HHHHhhhhhHhhhhhHHHHHHHHHHHHHH
Q 021465 108 LLDKIAKMEADCKAGERLKKDLQQAHIEA 136 (312)
Q Consensus 108 L~ek~~k~Eaelra~e~lk~EL~q~r~e~ 136 (312)
|.+|..+++.++...+..+.+....+.+.
T Consensus 34 l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~ 62 (246)
T TIGR03321 34 MDAREKKIAGELADADTKKREAEQERREY 62 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555444433
No 380
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=82.67 E-value=28 Score=29.39 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=32.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 167 LPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL-----QAMEKNLVGMAREMEKLHAEVVNAEM 228 (312)
Q Consensus 167 l~alraELe~LrqElq~~RaaiE~EKk~~~elleq~-----qaMEknL~~marEvekLrAEIanaek 228 (312)
+..+..+++.++.++...+..++.-......++... ..++..+..+......|...+.+..+
T Consensus 141 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~ 207 (213)
T cd00176 141 VEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQK 207 (213)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555544444444333333333332 35667777777777777776665544
No 381
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=82.65 E-value=40 Score=31.15 Aligned_cols=115 Identities=17% Similarity=0.202 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHH
Q 021465 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDL 129 (312)
Q Consensus 50 ~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL 129 (312)
.||-.-++|-..|+.+.-+|.... ...|+..-.||+.|+....+++.|. .++|+|-- =|+ -=|+.-
T Consensus 23 ~rLR~~E~ek~~~m~~~g~lm~ev---NrrlQ~hl~EIR~LKe~NqkLqedN-qELRdLCC---FLD-------ddRqKg 88 (195)
T PF10226_consen 23 RRLRRAEAEKMSLMVEHGRLMKEV---NRRLQQHLNEIRGLKEVNQKLQEDN-QELRDLCC---FLD-------DDRQKG 88 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHc---ccc-------hhHHHh
Confidence 344555566666666665554432 3456666678888888877777666 23444321 111 112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465 130 QQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT 187 (312)
Q Consensus 130 ~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa 187 (312)
..+--|-|+|...- +..+++|+..-...+++++.-+ +.|-+|-..+|.-
T Consensus 89 rklarEWQrFGryt------a~vmr~eV~~Y~~KL~eLE~kq---~~L~rEN~eLKEl 137 (195)
T PF10226_consen 89 RKLAREWQRFGRYT------ASVMRQEVAQYQQKLKELEDKQ---EELIRENLELKEL 137 (195)
T ss_pred HHHhHHHHHhhhHH------HHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHH
Confidence 23444555555544 5566777777665343333333 3344444444433
No 382
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=82.56 E-value=0.72 Score=41.44 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDL 80 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL 80 (312)
+||.+| .|-++|..++|||.+..--|+|||
T Consensus 18 lLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 18 LLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777 677788888888887777777777
No 383
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.56 E-value=34 Score=31.25 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=12.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFE 189 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE 189 (312)
+|..++.+.+.+.+++..++-.|+
T Consensus 160 ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 160 EISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555443
No 384
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=82.52 E-value=34 Score=30.20 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=17.2
Q ss_pred HHHHhhhhhHhhhhhHHHHHHHHHHHHHHH
Q 021465 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQ 137 (312)
Q Consensus 108 L~ek~~k~Eaelra~e~lk~EL~q~r~e~q 137 (312)
|.+|..++..++...+..+.+.++...+.+
T Consensus 51 l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e 80 (167)
T PRK08475 51 YKSRINKISKRLEEIQEKLKESKEKKEDAL 80 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666665554444
No 385
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=82.42 E-value=24 Score=31.08 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=23.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465 67 HRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES 101 (312)
Q Consensus 67 qrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~ 101 (312)
+.|++.+..|++.+++++.+|..|+..+..+++-.
T Consensus 9 e~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~ 43 (145)
T COG1730 9 EELAAQLQILQSQIESLQAQIAALNAAISELQTAI 43 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777777777777666665544
No 386
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=82.32 E-value=14 Score=28.04 Aligned_cols=42 Identities=24% Similarity=0.495 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHH-HHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 176 SLRQEHRRLRAT-FEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 176 ~LrqElq~~Raa-iE~EKk~~~elleq~qaMEknL~~marEvekLrAEIan 225 (312)
.+..||...+++ +.++ ..++..++...++.++|+.|+.++..
T Consensus 15 ~~~eEL~kvk~~n~~~e--------~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFE--------SKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544 3332 33445555555555555555555543
No 387
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=82.31 E-value=82 Score=34.46 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhhhhhhhhhh---HHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHH
Q 021465 53 AVQAAEIERLARDNHRLAAS---HITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDL 129 (312)
Q Consensus 53 ~~q~~Ei~~L~~dNqrLa~t---h~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL 129 (312)
..+-.|+...+.+|+.|... ...+..+|..+.+||-.|..+...=-.+-+.++-........ -...++.||.||
T Consensus 404 e~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~---yskQVeeLKtEL 480 (786)
T PF05483_consen 404 EVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQH---YSKQVEELKTEL 480 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHH
Confidence 45566778888888877654 444556777777777666543222222222222222221111 135566777777
Q ss_pred HHHH
Q 021465 130 QQAH 133 (312)
Q Consensus 130 ~q~r 133 (312)
.+.+
T Consensus 481 E~Ek 484 (786)
T PF05483_consen 481 EQEK 484 (786)
T ss_pred HHHH
Confidence 7644
No 388
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=82.25 E-value=39 Score=30.68 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHh
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHI 94 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~ 94 (312)
+...++..-..+...++.+-++=+.+.. ++.+..+++++..++..+
T Consensus 24 ~~~~~~~~A~~~A~~i~~~A~~eAe~~~--ke~~~eakee~~~~r~~~ 69 (201)
T PF12072_consen 24 INRKKLEQAEKEAEQILEEAEREAEAIK--KEAELEAKEEAQKLRQEL 69 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4455566666667777777766555443 556666777777776643
No 389
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=82.22 E-value=23 Score=30.22 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH--HHHHHHHHHH
Q 021465 135 EAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL--QAMEKNLVGM 212 (312)
Q Consensus 135 e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~--qaMEknL~~m 212 (312)
.++.+...+..|..+...+.+..-..+. ++..+|.++..+..++..++..+....+........- .++-..|..-
T Consensus 28 ~~~~~~~~~~~l~~~n~~lAe~nL~~~~---~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~~~s~~~l~~~L~~~ 104 (150)
T PF07200_consen 28 QVQELQQEREELLAENEELAEQNLSLEP---ELEELRSQLQELYEELKELESEYQEKEQQQDELSSNYSPDALLARLQAA 104 (150)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 021465 213 AREMEKLHAEVVN 225 (312)
Q Consensus 213 arEvekLrAEIan 225 (312)
..+.+.--.+|+.
T Consensus 105 ~~e~eeeSe~lae 117 (150)
T PF07200_consen 105 ASEAEEESEELAE 117 (150)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
No 390
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=82.15 E-value=46 Score=34.58 Aligned_cols=100 Identities=13% Similarity=0.142 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHH
Q 021465 124 RLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQ 203 (312)
Q Consensus 124 ~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~q 203 (312)
....+|++.|..--.. --+-+.-...|+-||+..+. -.+.++.||+.-++-.+.+..++..-..+++-.++|-.
T Consensus 274 ~~~~~le~er~~wtE~---ES~WIsLteeLR~dle~~r~---~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYa 347 (488)
T PF06548_consen 274 NAEEELEQERQRWTEA---ESKWISLTEELRVDLESSRS---LAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYA 347 (488)
T ss_pred chhhhHHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555433322 22333333445566665554 44666677777777777777777777778888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465 204 AMEKNLVGMAREMEKLHAEVVNAEMR 229 (312)
Q Consensus 204 aMEknL~~marEvekLrAEIanaekr 229 (312)
.++.+.+.+..-=.++...|....+.
T Consensus 348 dLqEk~~~Ll~~Hr~i~egI~dVKka 373 (488)
T PF06548_consen 348 DLQEKHNDLLARHRRIMEGIEDVKKA 373 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766654
No 391
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=82.14 E-value=14 Score=30.79 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=39.2
Q ss_pred HHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 106 RVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR 161 (312)
Q Consensus 106 R~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k 161 (312)
++|+++...||..+. .+-+++.+++..+..|......|.-|-+.|++-|.+..
T Consensus 4 ~~l~~~l~~le~~l~---~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 4 KELFDRLDQLEQQLG---QLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888888886654 34557777788888888877778777777777776654
No 392
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=82.14 E-value=41 Score=32.20 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 021465 171 HAELDSLRQEHRRL 184 (312)
Q Consensus 171 raELe~LrqElq~~ 184 (312)
..+++.|++||..+
T Consensus 283 ~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 283 QEEAEKLQKEIQDL 296 (297)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 34445555555443
No 393
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=82.10 E-value=38 Score=30.47 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=52.8
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 157 LHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEV 223 (312)
Q Consensus 157 L~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEI 223 (312)
|...+...-+...++.|.+.|+.|+..++..++.-.+.+.++..+..+++.++.+|-..+++-|.-+
T Consensus 89 Lq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 89 LQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443334556777888888888888888888888888899999999999999999999887654
No 394
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=81.75 E-value=42 Score=30.73 Aligned_cols=36 Identities=36% Similarity=0.432 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 126 KKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR 161 (312)
Q Consensus 126 k~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k 161 (312)
+..|.+.+.-++.-...-++...+++.|+.-|.-.+
T Consensus 87 ~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~ 122 (188)
T PF05335_consen 87 KASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQ 122 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444
No 395
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=81.70 E-value=33 Score=36.78 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=48.5
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHH
Q 021465 54 VQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAH 133 (312)
Q Consensus 54 ~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r 133 (312)
---+|..+|+.+|--|-.+--+| ...+-+| ++|.+..-.+.+-|+.||+.++
T Consensus 298 GMGrEVeNLilENsqLLetKNAL----NiVKNDL------------------------IakVDeL~~E~~vLrgElea~k 349 (832)
T KOG2077|consen 298 GMGREVENLILENSQLLETKNAL----NIVKNDL------------------------IAKVDELTCEKDVLRGELEAVK 349 (832)
T ss_pred cchHHHHHHHHhhHHHHhhhhHH----HHHHHHH------------------------HHHHHhhccHHHHHhhHHHHHH
Confidence 44578889999997777665433 2222211 2223322234466777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 134 IEAQSLARARQELTSKIQQASEALHKAR 161 (312)
Q Consensus 134 ~e~q~L~~~rqeL~aevq~l~~EL~r~k 161 (312)
+---||...-.+|-.+++.++.++.-++
T Consensus 350 qak~Klee~i~elEEElk~~k~ea~~ar 377 (832)
T KOG2077|consen 350 QAKLKLEEKIRELEEELKKAKAEAEDAR 377 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7666677777777777776666665554
No 396
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.70 E-value=50 Score=34.03 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=2.9
Q ss_pred HHhhhhhH
Q 021465 110 DKIAKMEA 117 (312)
Q Consensus 110 ek~~k~Ea 117 (312)
.|..+.|.
T Consensus 48 a~~~~~E~ 55 (459)
T KOG0288|consen 48 AKLQEKEL 55 (459)
T ss_pred HHHHHHHH
Confidence 33333333
No 397
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=81.53 E-value=38 Score=30.14 Aligned_cols=31 Identities=3% Similarity=0.162 Sum_probs=18.7
Q ss_pred HHHHhhhhhHhhhhhHHHHHHHHHHHHHHHH
Q 021465 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQS 138 (312)
Q Consensus 108 L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~ 138 (312)
|.+|..+++.++...+..|.+++.++.+.+.
T Consensus 39 Le~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~ 69 (155)
T PRK06569 39 FNNRQTNIQDNITQADTLTIEVEKLNKYYNE 69 (155)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666555543
No 398
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=81.15 E-value=7.2 Score=38.20 Aligned_cols=119 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHh
Q 021465 119 CKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDN 198 (312)
Q Consensus 119 lra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~el 198 (312)
.+.++++++.|.++..++......-++...+++.+...|...+. +......+.+.+..++......++.-.+.-..+
T Consensus 213 ~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~---~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L 289 (344)
T PF12777_consen 213 NKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQK---EYEEAQKEKQELEEEIEETERKLERAEKLISGL 289 (344)
T ss_dssp CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccc
Q 021465 199 VEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAPNPYSRTY 240 (312)
Q Consensus 199 leq~qaMEknL~~marEvekLrAEIanaekra~a~~~y~~~~ 240 (312)
-.+..--..++..+..+...|=.+.-=+..-..=.|+|...|
T Consensus 290 ~~E~~RW~~~~~~l~~~~~~l~GD~llaaa~isY~G~f~~~~ 331 (344)
T PF12777_consen 290 SGEKERWSEQIEELEEQLKNLVGDSLLAAAFISYLGPFTPEY 331 (344)
T ss_dssp HHHHHCCHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCTSHHH
T ss_pred cchhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCCHHH
No 399
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=81.10 E-value=17 Score=30.61 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=42.0
Q ss_pred HHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 106 RVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR 161 (312)
Q Consensus 106 R~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k 161 (312)
++|+++...||..+. .+-+++.+++..+..|......|.-|-+.|++-|.+..
T Consensus 4 ~elfd~l~~le~~l~---~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 4 KEIFDALDDLEQNLG---VLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 688999999987664 34558888888888888888888888888888887653
No 400
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=81.10 E-value=86 Score=33.86 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=35.4
Q ss_pred CchhhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHH
Q 021465 44 PLPLLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKA 92 (312)
Q Consensus 44 p~p~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~ 92 (312)
.+|-+..-|..+-++.+.+..+=..|...+.+|.+.|...-+|+.....
T Consensus 298 ~lpsv~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~~~ 346 (632)
T PF14817_consen 298 ALPSVHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERRLS 346 (632)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3555566666677788888887777777888888888888777776633
No 401
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=81.06 E-value=28 Score=36.19 Aligned_cols=21 Identities=10% Similarity=0.215 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEV 223 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEI 223 (312)
+.++..|..+..|+..|++++
T Consensus 100 ~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 100 GDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 444555556666777776666
No 402
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.04 E-value=55 Score=31.64 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhHHHHH
Q 021465 77 REDLAAAQQEIPRIKA 92 (312)
Q Consensus 77 ~qeL~aaq~Elq~L~~ 92 (312)
..++..+|.||+.|..
T Consensus 44 ~~~~~~~q~ei~~L~~ 59 (265)
T COG3883 44 QKEKKNIQNEIESLDN 59 (265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444444
No 403
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=81.00 E-value=23 Score=27.62 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTSKIQQAS 154 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~ 154 (312)
..|+.|+.+++.+...|...+.+|..+.+.++
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33444444444444444433333333333333
No 404
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.55 E-value=7.8 Score=34.62 Aligned_cols=10 Identities=10% Similarity=0.238 Sum_probs=4.5
Q ss_pred hhhchhhHHH
Q 021465 96 NIHTESDSHI 105 (312)
Q Consensus 96 ~~~ae~e~qi 105 (312)
..++++.+.|
T Consensus 97 ~fraQRN~YI 106 (192)
T PF05529_consen 97 KFRAQRNMYI 106 (192)
T ss_pred HHHHHHhHHH
Confidence 3444444444
No 405
>PTZ00121 MAEBL; Provisional
Probab=80.49 E-value=1.4e+02 Score=35.79 Aligned_cols=13 Identities=31% Similarity=0.251 Sum_probs=6.6
Q ss_pred HHHHHHHhhhhhh
Q 021465 54 VQAAEIERLARDN 66 (312)
Q Consensus 54 ~q~~Ei~~L~~dN 66 (312)
.+..|-.|+..++
T Consensus 1108 t~r~ee~r~~ee~ 1120 (2084)
T PTZ00121 1108 TGKAEEARKAEEA 1120 (2084)
T ss_pred hhhhHHHHHHHHH
Confidence 3444555555555
No 406
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=80.45 E-value=53 Score=31.08 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHHHHHHhHHHH
Q 021465 69 LAASHITMREDLAAAQQEIPRIK 91 (312)
Q Consensus 69 La~th~~L~qeL~aaq~Elq~L~ 91 (312)
+.......+..|..++.++..+.
T Consensus 78 ~~~~l~~a~a~l~~~~~~~~~~~ 100 (334)
T TIGR00998 78 AELALAKAEANLAALVRQTKQLE 100 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 407
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=80.33 E-value=45 Score=30.21 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=31.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL-QAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~-qaMEknL~~marEvekLrAEIa 224 (312)
++..++.+++.|+.++..++..++.-.+...+..... +.....++-+.+..+.|+.+|.
T Consensus 128 ~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445556666666666666666555444444333322 4444444555555555655554
No 408
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=80.32 E-value=24 Score=27.44 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 021465 129 LQQAHIEAQSLAR 141 (312)
Q Consensus 129 L~q~r~e~q~L~~ 141 (312)
+.++...+++++.
T Consensus 6 l~~LE~ki~~ave 18 (72)
T PF06005_consen 6 LEQLEEKIQQAVE 18 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 409
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.31 E-value=37 Score=34.07 Aligned_cols=10 Identities=30% Similarity=0.464 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 021465 137 QSLARARQEL 146 (312)
Q Consensus 137 q~L~~~rqeL 146 (312)
++|...+++|
T Consensus 249 ~kL~~~~etL 258 (365)
T KOG2391|consen 249 QKLVAMKETL 258 (365)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 410
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=80.30 E-value=64 Score=31.92 Aligned_cols=13 Identities=8% Similarity=0.399 Sum_probs=5.6
Q ss_pred HHHHHhhhhhhhh
Q 021465 56 AAEIERLARDNHR 68 (312)
Q Consensus 56 ~~Ei~~L~~dNqr 68 (312)
+.....+..+.+.
T Consensus 12 ~~~lk~~~~~~qk 24 (332)
T TIGR01541 12 DRKLKKLNTADEK 24 (332)
T ss_pred HHHHhhhhHHHHH
Confidence 3334444444443
No 411
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=80.28 E-value=16 Score=27.81 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Q 021465 123 ERLKKDLQQAHIEAQSLA-RARQELTSKIQQASEALHKARLE 163 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~-~~rqeL~aevq~l~~EL~r~kad 163 (312)
+.+..-|.|...|++.+- +.|..+..++...+.+|.+++.+
T Consensus 35 ~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 35 DEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666667777665 67777777777777777776653
No 412
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=80.13 E-value=44 Score=29.88 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=40.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVV 224 (312)
Q Consensus 166 ql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIa 224 (312)
++-.+-+++..+++.++.....|..-...-..+-.+++.+.+.++.+.+-.+.-+.+.+
T Consensus 87 ~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~~eda~ 145 (158)
T PF09486_consen 87 RVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAAAEDAQ 145 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHhc
Confidence 33455566677777777777776666666677777777777777777776666655543
No 413
>PLN03188 kinesin-12 family protein; Provisional
Probab=80.12 E-value=30 Score=39.95 Aligned_cols=168 Identities=15% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhh---hhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHH
Q 021465 56 AAEIERLARDNHRL---AASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQA 132 (312)
Q Consensus 56 ~~Ei~~L~~dNqrL---a~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~ 132 (312)
+.|+-.|+.++..| -..| =++..+.-||.++.......+.=. |+-+.|.|-.|++++
T Consensus 939 ~~~~~~~~~~~~~~~~~y~~~----p~~~~~~~e~~~~~~e~~~~~~~~----------------d~~ErEvll~eI~dl 998 (1320)
T PLN03188 939 EEELASLMHEHKLLKEKYENH----PEVLRTKIELKRVQDELEHYRNFY----------------DMGEREVLLEEIQDL 998 (1320)
T ss_pred hhhhhhhhhhHHHHHHHhhcC----hhhhhhhHHHHHHHHHHHHHHhhc----------------cchhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH-------------------------------HHHHHHHHHHHHHHHHHHhcccc---hhHHHHHHHHH
Q 021465 133 HIEAQSLARARQ-------------------------------ELTSKIQQASEALHKARLEVKNL---PDLHAELDSLR 178 (312)
Q Consensus 133 r~e~q~L~~~rq-------------------------------eL~aevq~l~~EL~r~kad~qql---~alraELe~Lr 178 (312)
|+.+|-+...-- +...+..-+...+.=.+++.+=| +.||.|||.-+
T Consensus 999 r~qL~~~~d~s~~s~~~~~~~l~l~y~~~~~~~~~~~~i~e~~~~~~e~~l~~er~~w~e~es~wislteelr~eles~r 1078 (1320)
T PLN03188 999 RSQLQYYIDSSLPSARKRNSLLKLTYSCEPSQAPPLNTIPESTDESPEKKLEQERLRWTEAESKWISLAEELRTELDASR 1078 (1320)
T ss_pred HHHHHhhcccccchhhhccchhhhhhhcCccccccccccccccccchhHHHHHHHHHHHHHhhhheechHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhcHHhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC-CCCccccCC
Q 021465 179 QEHRRLRATFEYEKGLNIDNVEQL--------------QAMEKNLVGMAREMEKLHAEVVNAEMR-GHAP-NPYSRTYTN 242 (312)
Q Consensus 179 qElq~~RaaiE~EKk~~~elleq~--------------qaMEknL~~marEvekLrAEIanaekr-a~a~-~~y~~~~~n 242 (312)
.=.+++|..++.||+--.|+-+-| ..++.+.+.+...=-+++.-|...++. ++|| .+-+..|.|
T Consensus 1079 ~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~ 1158 (1320)
T PLN03188 1079 ALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFIN 1158 (1320)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Q ss_pred C
Q 021465 243 P 243 (312)
Q Consensus 243 ~ 243 (312)
+
T Consensus 1159 a 1159 (1320)
T PLN03188 1159 A 1159 (1320)
T ss_pred H
No 414
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=80.11 E-value=1.1e+02 Score=34.35 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=42.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhH---------------HHHHHHHHhhhhhHhhh
Q 021465 62 LARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDS---------------HIRVLLDKIAKMEADCK 120 (312)
Q Consensus 62 L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~---------------qiR~L~ek~~k~Eaelr 120 (312)
|+-+|-.+.... |++.++-.|.+.....|.-.++++|+ .||---++.-++++-|.
T Consensus 221 LLPeN~GVrKAF----QDMEsALRENRMTLEAIkvTQsDRDLFKHLItE~tnYVAaDYMRhANeRR~~~~~al~ 290 (1480)
T COG3096 221 LLPENSGVRKAF----QDMEAALRENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMRHANERRVHLDQALE 290 (1480)
T ss_pred hCcccccHHHHH----HHHHHHHHhchhhHHHHHhhhhhHHHHHHHHHhhhhHHHHHHHHhhhhhhccHHHHHH
Confidence 566776666666 89999999999999989888888864 56666677777776654
No 415
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=80.09 E-value=11 Score=38.16 Aligned_cols=30 Identities=13% Similarity=0.362 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 198 NVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 198 lleq~qaMEknL~~marEvekLrAEIanae 227 (312)
+.++++.+.+.+..+..++..++.++...-
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666777777777766533
No 416
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=79.95 E-value=30 Score=27.95 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHH
Q 021465 176 SLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAR 214 (312)
Q Consensus 176 ~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~mar 214 (312)
.+.+.+.++-+.+..+...+|+.+..++++..++..+..
T Consensus 28 ~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 28 ILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333344444444444445555555555444444444444
No 417
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=79.80 E-value=84 Score=32.99 Aligned_cols=65 Identities=18% Similarity=0.249 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh-cHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccC
Q 021465 168 PDLHAELDSLRQEHRRLRATFEYEKGL-NIDNVEQLQAMEKNLVGMAR-EMEKLHAEVVNAEMRGHA 232 (312)
Q Consensus 168 ~alraELe~LrqElq~~RaaiE~EKk~-~~elleq~qaMEknL~~mar-EvekLrAEIanaekra~a 232 (312)
..-++=++.+|+-++.++.+||.|+.+ ..|-++|.-.|-.+..+-+. ||.=+-+-+++.-.-+||
T Consensus 179 ~dE~~mv~~yr~ki~aL~~aIe~Er~~m~EEAiqe~~dmsaeVlE~AaeEVP~vGag~At~iATaRa 245 (508)
T PF00901_consen 179 QDERKMVEEYRQKIDALKNAIEVEREGMQEEAIQEIADMSAEVLEHAAEEVPLVGAGVATGIATARA 245 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHhhhCCcccHHHHHHHHHHHH
Confidence 344466788899999999999999955 46677887777777665544 555555555555544444
No 418
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=79.72 E-value=43 Score=35.41 Aligned_cols=118 Identities=21% Similarity=0.224 Sum_probs=68.3
Q ss_pred HHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Q 021465 106 RVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLR 185 (312)
Q Consensus 106 R~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~R 185 (312)
|...+|+--||.|+. .++.+.+-.+..|..|...|++|..+|-.|+.--+-.+. -+-.-+.|+..-.-.|...=
T Consensus 593 kG~Aeki~~me~Ei~---glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakK---AVhdaK~ElA~~Y~klLagi 666 (790)
T PF07794_consen 593 KGYAEKIGFMEMEIG---GLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKK---AVHDAKVELAAAYSKLLAGI 666 (790)
T ss_pred hhhHhhhhhhhhhhc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345577777777664 456677777888999999999988888777765544442 33333444432221111111
Q ss_pred HHHHHHHhhcHH----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465 186 ATFEYEKGLNID----------NVEQLQAMEKNLVGMAREMEKLHAEVVNAEMR 229 (312)
Q Consensus 186 aaiE~EKk~~~e----------lleq~qaMEknL~~marEvekLrAEIanaekr 229 (312)
..-=.-||.+.- ++.=++.|.|+-|.+.-|-.+|.|||-.++.+
T Consensus 667 KEKwv~KKe~t~le~qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~ea~ 720 (790)
T PF07794_consen 667 KEKWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDLEAR 720 (790)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHHHhh
Confidence 110012222222 22333555666667777888899998887744
No 419
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=79.72 E-value=15 Score=29.34 Aligned_cols=47 Identities=19% Similarity=0.105 Sum_probs=26.1
Q ss_pred HHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 021465 186 ATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHA 232 (312)
Q Consensus 186 aaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanaekra~a 232 (312)
-.||..|..|..+.++.+....+-.++.++-++|+.|-.+++.|.|+
T Consensus 25 mEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 25 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444445555666777777777777666553
No 420
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=79.65 E-value=73 Score=32.18 Aligned_cols=31 Identities=16% Similarity=0.245 Sum_probs=17.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhHHHHHHhh
Q 021465 65 DNHRLAASHITMREDLAAAQQEIPRIKAHIR 95 (312)
Q Consensus 65 dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~ 95 (312)
.+.-|......|+..+..+...++.-+..+.
T Consensus 196 ~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~ 226 (458)
T COG3206 196 ASDSLDERLEELRARLQEAEAQVEDFRAQHG 226 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344566666666666666666655544443
No 421
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=79.42 E-value=56 Score=33.65 Aligned_cols=15 Identities=33% Similarity=0.306 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 021465 172 AELDSLRQEHRRLRA 186 (312)
Q Consensus 172 aELe~LrqElq~~Ra 186 (312)
.|...+..|..+.++
T Consensus 62 ~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 62 EENTQLNEERVREEA 76 (459)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444433333
No 422
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=79.36 E-value=1.1e+02 Score=34.00 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH---HHHHHhh
Q 021465 122 GERLKKDLQQAHIEAQSLARA----RQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT---FEYEKGL 194 (312)
Q Consensus 122 ~e~lk~EL~q~r~e~q~L~~~----rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa---iE~EKk~ 194 (312)
+|.|-+.++..+.|-++|... |++|+.--+...-|..|.+- +++...+.++.++=.++..... +......
T Consensus 457 neellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~---ev~eal~~~k~~q~kLe~sekEN~iL~itlrQ 533 (861)
T PF15254_consen 457 NEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKI---EVEEALVNVKSLQFKLEASEKENQILGITLRQ 533 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHH
Confidence 344444444445555555555 66666666666666666664 4444445555444333333322 2223333
Q ss_pred cHHhHHHHHHHHHHHH
Q 021465 195 NIDNVEQLQAMEKNLV 210 (312)
Q Consensus 195 ~~elleq~qaMEknL~ 210 (312)
+-..+..++.+.+.|.
T Consensus 534 rDaEi~RL~eLtR~LQ 549 (861)
T PF15254_consen 534 RDAEIERLRELTRTLQ 549 (861)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444455555543
No 423
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=79.34 E-value=35 Score=28.34 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEV 223 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEI 223 (312)
..+++++..+.+++..+...+
T Consensus 104 ~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 104 EKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 424
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=79.27 E-value=39 Score=31.21 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 129 LQQAHIEAQSLARARQELTSKIQQASEALH 158 (312)
Q Consensus 129 L~q~r~e~q~L~~~rqeL~aevq~l~~EL~ 158 (312)
+..+++|++--..+++.....-+..++|..
T Consensus 128 a~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~ 157 (192)
T PF11180_consen 128 ANRLQADLQIARQQQQQVAARQQQARQEAQ 157 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433333333333
No 425
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=79.08 E-value=39 Score=28.67 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHH
Q 021465 52 IAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPR 89 (312)
Q Consensus 52 l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~ 89 (312)
|-.|-+.|+||+.-+.--+.-.+.++++|.+++.+|..
T Consensus 2 lK~riRdieRLL~r~~Lp~~vR~~~Er~L~~L~~~l~~ 39 (114)
T PF10153_consen 2 LKKRIRDIERLLKRKDLPADVRVEKERELEALKRELEE 39 (114)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999987755577788899999999888776
No 426
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=79.02 E-value=65 Score=34.42 Aligned_cols=38 Identities=8% Similarity=0.192 Sum_probs=20.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchh
Q 021465 64 RDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTES 101 (312)
Q Consensus 64 ~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~ 101 (312)
.++.+|......|.|.|-.-..++.....-...|+.+.
T Consensus 414 ~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~ 451 (607)
T KOG0240|consen 414 EEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQL 451 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555444444433
No 427
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=78.98 E-value=1.2e+02 Score=34.10 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHH
Q 021465 70 AASHITMREDLAAAQQEIPRIKAH 93 (312)
Q Consensus 70 a~th~~L~qeL~aaq~Elq~L~~~ 93 (312)
...+..|+++...+++-.+.++..
T Consensus 933 Pe~~e~L~~~y~qA~~~q~q~~qq 956 (1480)
T COG3096 933 PEQFEQLKEDYAQAQQMQRQARQQ 956 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888887777766666553
No 428
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=78.62 E-value=20 Score=35.50 Aligned_cols=107 Identities=18% Similarity=0.193 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhcccchh-----HH----HHHH----HHHHHHHHHHH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKAR---LEVKNLPD-----LH----AELD----SLRQEHRRLRA 186 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k---ad~qql~a-----lr----aELe----~LrqElq~~Ra 186 (312)
+..|+++.+.|.++..+.-+-|+|+=|+.-+.+||.+-+ +.-+.|+- -. .++. ....+.+..=+
T Consensus 15 ~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~~~~~~~~H~lml~ 94 (355)
T PF09766_consen 15 KKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDPELTEDDEHQLMLA 94 (355)
T ss_pred HHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhccccccCCCChHHHHHH
Confidence 556777777777777777777777777777888876433 11111110 01 1110 11234444455
Q ss_pred HHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021465 187 TFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMR 229 (312)
Q Consensus 187 aiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanaekr 229 (312)
+++.|...+.++.++.+.+++....+..++++.+..|.+....
T Consensus 95 RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~ 137 (355)
T PF09766_consen 95 RLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQ 137 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5677777777777777777777777777777777777665543
No 429
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=78.57 E-value=43 Score=28.88 Aligned_cols=80 Identities=16% Similarity=0.337 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhH
Q 021465 120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNV 199 (312)
Q Consensus 120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ell 199 (312)
.+...+-+.|+++-..+.+ .++.|+.+++.+-..|++..+ -....+.++..++..+.+.+..++ .+
T Consensus 43 ~A~~~v~kql~~vs~~l~~---tKkhLsqRId~vd~klDe~~e---i~~~i~~eV~~v~~dv~~i~~dv~--------~v 108 (126)
T PF07889_consen 43 DAVASVSKQLEQVSESLSS---TKKHLSQRIDRVDDKLDEQKE---ISKQIKDEVTEVREDVSQIGDDVD--------SV 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHH--------HH
Q ss_pred HHH-HHHHHHHHHHH
Q 021465 200 EQL-QAMEKNLVGMA 213 (312)
Q Consensus 200 eq~-qaMEknL~~ma 213 (312)
.++ ..|+-+|.++.
T Consensus 109 ~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 109 QQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHh
No 430
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=78.57 E-value=65 Score=33.79 Aligned_cols=39 Identities=10% Similarity=0.255 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhcHHhHHHH-HHHHHHHHHHHHHHH
Q 021465 179 QEHRRLRATFEYEKGLNIDNVEQL-QAMEKNLVGMAREME 217 (312)
Q Consensus 179 qElq~~RaaiE~EKk~~~elleq~-qaMEknL~~marEve 217 (312)
+.+.+++.++..|-..+...-..| ..|..|++.+..-++
T Consensus 161 ~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~aL~~aIe 200 (508)
T PF00901_consen 161 KQLDRLARALQKESRERTQDERKMVEEYRQKIDALKNAIE 200 (508)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555543333333 666666666666333
No 431
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=78.43 E-value=16 Score=29.62 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465 144 QELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT 187 (312)
Q Consensus 144 qeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa 187 (312)
..|..+++.|+..+++-- .+.---.|--.|+.|+.++|.=
T Consensus 27 ~~L~eEI~~Lr~qve~nP----evtr~A~EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 27 EALKEEIQLLREQVEHNP----EVTRFAMENIRLREELRRLQSF 66 (86)
T ss_pred HHHHHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444422 2333335555666677666664
No 432
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=78.41 E-value=60 Score=30.53 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=19.7
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhHHH
Q 021465 61 RLARDNHRLAASHITMREDLAAAQQEIPRI 90 (312)
Q Consensus 61 ~L~~dNqrLa~th~~L~qeL~aaq~Elq~L 90 (312)
.+..+..+++..|..|.+.|...-.+|..+
T Consensus 64 ~~~~~~E~~a~~H~~l~~~L~~~~~~i~~~ 93 (261)
T cd07674 64 VFRVSSDKLALCHLELMRKLNDLIKDINRY 93 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677777877777776555556655
No 433
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=78.39 E-value=97 Score=32.87 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=21.6
Q ss_pred hhHHHH---HHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 021465 47 LLEDKI---AVQAAEIERLARDNHRLAASHITMREDLAAA 83 (312)
Q Consensus 47 ~lE~~l---~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aa 83 (312)
+||+|. +.-..=.|+|+.-|.-|-.....|+..+.+.
T Consensus 70 lle~k~~dlElaAkiGqsllk~nk~Lq~~nesLeEqv~~~ 109 (596)
T KOG4360|consen 70 LLEEKRRDLELAAKIGQSLLKANKALQEDNESLEEQVDAP 109 (596)
T ss_pred HHhcccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcch
Confidence 777763 3333335777777776666666665544433
No 434
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=78.14 E-value=61 Score=35.22 Aligned_cols=139 Identities=19% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHH
Q 021465 56 AAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIE 135 (312)
Q Consensus 56 ~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e 135 (312)
..-+.||..|-.-|.-.-..|-..+.+..+-|+-|.. =|-+.-.|.--.| |-|.+|+.--
T Consensus 110 QerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~-----------cie~kr~kLnatE------EmLQqellsr--- 169 (861)
T KOG1899|consen 110 QERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLET-----------CIEEKRNKLNATE------EMLQQELLSR--- 169 (861)
T ss_pred HHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHH-----------HHHHHHhhhchHH------HHHHHHHHhh---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHH
Q 021465 136 AQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMARE 215 (312)
Q Consensus 136 ~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marE 215 (312)
++|..++-+|+++|-.|+-.+.....|--+.+.-...-+.+=||+- +...-+...+.-.+|.++.+-..|
T Consensus 170 -tsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn---------~~kv~e~~~erlqye~klkstk~e 239 (861)
T KOG1899|consen 170 -TSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN---------QSKVGEVVQERLQYETKLKSTKGE 239 (861)
T ss_pred -hhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH---------HHHHHHHHHHHHHHHhhcccccch
Q ss_pred HHHHHHHHH
Q 021465 216 MEKLHAEVV 224 (312)
Q Consensus 216 vekLrAEIa 224 (312)
+..|+..++
T Consensus 240 ~a~L~Eq~~ 248 (861)
T KOG1899|consen 240 MAPLREQRS 248 (861)
T ss_pred hhhHHHHHh
No 435
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=77.93 E-value=69 Score=30.91 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=17.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHhHHHH
Q 021465 64 RDNHRLAASHITMREDLAAAQQEIPRIK 91 (312)
Q Consensus 64 ~dNqrLa~th~~L~qeL~aaq~Elq~L~ 91 (312)
.|+..+......++.+|..++.++..+.
T Consensus 79 ld~~~~~~~l~~a~a~l~~a~a~l~~~~ 106 (346)
T PRK10476 79 IDPRPYELTVAQAQADLALADAQIMTTQ 106 (346)
T ss_pred ECcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666665554
No 436
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=77.82 E-value=52 Score=30.91 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 170 LHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 170 lraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae 227 (312)
+.+|.+.+..++..++..++...+.....-.+..+|.|..+...+|-+.|-.|-.+..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555555544443
No 437
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=77.82 E-value=50 Score=32.53 Aligned_cols=85 Identities=19% Similarity=0.296 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----hhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHH
Q 021465 136 AQSLARARQELTSKIQQASEALHKARLEVKNL-----PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLV 210 (312)
Q Consensus 136 ~q~L~~~rqeL~aevq~l~~EL~r~kad~qql-----~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~ 210 (312)
.=+|...|..|-.|+..--+.|.+.-++++.- .+|.+|+|..++|.... ...+++.-+.++.|..--.
T Consensus 166 tvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmei-------L~aRqkkAeeLkrltd~A~ 238 (302)
T PF07139_consen 166 TVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEI-------LDARQKKAEELKRLTDRAS 238 (302)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 33466677767666666666666655544433 45556666666554432 1223334444555555555
Q ss_pred HHHH-HHHHHHHHHHHHH
Q 021465 211 GMAR-EMEKLHAEVVNAE 227 (312)
Q Consensus 211 ~mar-EvekLrAEIanae 227 (312)
.|.. ++-.|||||...-
T Consensus 239 ~MsE~Ql~ELRadIK~fv 256 (302)
T PF07139_consen 239 QMSEEQLAELRADIKHFV 256 (302)
T ss_pred hcCHHHHHHHHHHHHHHh
Confidence 5544 8889999998653
No 438
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=77.80 E-value=33 Score=30.24 Aligned_cols=10 Identities=20% Similarity=0.401 Sum_probs=4.2
Q ss_pred cchhHHHHHH
Q 021465 166 NLPDLHAELD 175 (312)
Q Consensus 166 ql~alraELe 175 (312)
+|+.++++.+
T Consensus 59 ~i~~lq~~~~ 68 (155)
T PF06810_consen 59 QIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 439
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=77.61 E-value=77 Score=31.35 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=5.8
Q ss_pred HHHHHHHHHHH
Q 021465 203 QAMEKNLVGMA 213 (312)
Q Consensus 203 qaMEknL~~ma 213 (312)
+.|+.+|..+.
T Consensus 180 ~gm~dal~~fv 190 (332)
T TIGR01541 180 GGMASNIAQML 190 (332)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 440
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=77.50 E-value=62 Score=30.17 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=13.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhHHH
Q 021465 62 LARDNHRLAASHITMREDLAAAQQEIPRI 90 (312)
Q Consensus 62 L~~dNqrLa~th~~L~qeL~aaq~Elq~L 90 (312)
|..+...++..|..|-+.|...-.+|.++
T Consensus 65 i~~~~e~~a~~H~~l~~~L~~~~~~l~~~ 93 (261)
T cd07648 65 LRVSTEKLSELHLQLVQKLQELIKDVQKY 93 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555554333344443
No 441
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=77.14 E-value=48 Score=28.75 Aligned_cols=31 Identities=10% Similarity=0.278 Sum_probs=19.9
Q ss_pred HHHHhhhhhHhhhhhHHHHHHHHHHHHHHHH
Q 021465 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQS 138 (312)
Q Consensus 108 L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~ 138 (312)
|.+|..++..++...+..+.+..++..+.++
T Consensus 37 l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~ 67 (164)
T PRK14471 37 VKEREDSIKNALASAEEARKEMQNLQADNER 67 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666676667777777766665553
No 442
>PF14182 YgaB: YgaB-like protein
Probab=77.06 E-value=28 Score=27.85 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021465 128 DLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEY 190 (312)
Q Consensus 128 EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~ 190 (312)
+|.-+.+++.+ -+...++|.....+. .+..++.||..+++++...+..|+.
T Consensus 15 ~LL~LQsElER-----------CqeIE~eL~~l~~ea-~l~~i~~EI~~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 15 KLLFLQSELER-----------CQEIEKELKELEREA-ELHSIQEEISQMKKELKEIQRVFEK 65 (79)
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566655 455555554444322 5666777777777777777776664
No 443
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=76.88 E-value=49 Score=31.54 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH---
Q 021465 71 ASHITMREDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQ--- 144 (312)
Q Consensus 71 ~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rq--- 144 (312)
..+..|+.+|..+-..++.++..+..++.+- .+.|-.+..|...+..-+..+..++ .+.+....++.|.....
T Consensus 67 ~~v~el~~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~-~v~~~~~~l~~ll~~~dy~~ 145 (291)
T PF10475_consen 67 SSVQELQDELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIK-TVQQTQSRLQELLEEGDYPG 145 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHH
Confidence 3466788999999999999999998888663 6777788888888888888888886 88888899998876543
Q ss_pred --HHHHHHHHHHHHHHH
Q 021465 145 --ELTSKIQQASEALHK 159 (312)
Q Consensus 145 --eL~aevq~l~~EL~r 159 (312)
+|..+.+.+-+++..
T Consensus 146 Al~li~~~~~~l~~l~~ 162 (291)
T PF10475_consen 146 ALDLIEECQQLLEELKG 162 (291)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 455666665555433
No 444
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=76.85 E-value=63 Score=29.89 Aligned_cols=60 Identities=8% Similarity=0.252 Sum_probs=38.4
Q ss_pred hhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhch--------hhHHHHHHHHHhhhhhHhhh
Q 021465 61 RLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTE--------SDSHIRVLLDKIAKMEADCK 120 (312)
Q Consensus 61 ~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae--------~e~qiR~L~ek~~k~Eaelr 120 (312)
.++.+=.........+++.+..+=.+++.++..+..++.. ...=+.+|..+..+..+.|.
T Consensus 28 ~~L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~ 95 (240)
T PF12795_consen 28 SFLDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQ 95 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHH
Confidence 3555566666777777888888888888888777777554 12334455555555555443
No 445
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=76.71 E-value=32 Score=31.74 Aligned_cols=80 Identities=18% Similarity=0.209 Sum_probs=49.0
Q ss_pred HHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHH
Q 021465 108 LLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEAL-------------------------HKARL 162 (312)
Q Consensus 108 L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL-------------------------~r~ka 162 (312)
|.+|...+|+-.+..-..= |+ .|+.+|.+-.+-++.-|+.+-+.| .+...
T Consensus 8 ~~eKrr~L~aI~~~SKdFF----qL-kEvEkLGSKK~IVl~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~~~qk~~~ 82 (209)
T COG5124 8 LAEKRRRLEAIFHDSKDFF----QL-KEVEKLGSKKQIVLMTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQTLQKLYD 82 (209)
T ss_pred HHHHHHHHHHHHhccHHHH----HH-HHHHHhccccccHHHHHHHHHHHHhhcCceeeeeeccceeEEecchHHHHHHHH
Confidence 4566666776655443321 11 245555555555555555554444 22222
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021465 163 EVKNLPDLHAELDSLRQEHRRLRATFEYEKGLN 195 (312)
Q Consensus 163 d~qql~alraELe~LrqElq~~RaaiE~EKk~~ 195 (312)
....++++++.|+|.+-.++..|+.||..+
T Consensus 83 ---~~~~l~~~~~~~kqdi~t~~e~i~~ek~~r 112 (209)
T COG5124 83 ---SSELLKKKIQEVKQDIATYKEEIDKEKATR 112 (209)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 557888899999999999999999888543
No 446
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=76.66 E-value=70 Score=30.33 Aligned_cols=176 Identities=15% Similarity=0.198 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHHHhhhh-----hhh-hhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHH----HHhhhhh
Q 021465 47 LLEDKIAVQAAEIERLAR-----DNH-RLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLL----DKIAKME 116 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~-----dNq-rLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~----ek~~k~E 116 (312)
.+|.+|-.-+--+-++.. ++. -+.+....|-.-|..-+++++.+.+.......-.+.+....+ .-..-|+
T Consensus 44 eiE~~Lk~KC~~Lls~~~p~~~~~s~~l~~ak~~~L~~~l~~ek~~~~~~k~~~~e~~~~l~~q~~~y~~vL~~cl~~L~ 123 (238)
T PF14735_consen 44 EIEERLKKKCFSLLSYHQPDSESSSEGLKAAKSWQLPELLREEKQRLEKEKAQLRELLVLLERQFATYYQVLLQCLQLLQ 123 (238)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccccchhhHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888777777766654 222 223444444445555555555444433333222222222222 2222222
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 021465 117 ADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNI 196 (312)
Q Consensus 117 aelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~ 196 (312)
..+. --.++..-.--+..++=|....+.+..++..+.-+|-..- =+|+--.-+...|.+++......+.++..-.
T Consensus 124 ~li~-~~rl~~q~~~d~~~~~~L~~kceam~lKLr~~~~~iL~~T----YTpe~v~Al~~Ir~~L~~~~~~~e~~~~~a~ 198 (238)
T PF14735_consen 124 KLIE-KHRLGTQAELDKIKAEYLEAKCEAMILKLRVLELEILSDT----YTPETVPALRKIRDHLEEAIEELEQELQKAR 198 (238)
T ss_pred HHHH-HHhhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----CCHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 0011211122245566677778888888888888875543 3355555556677777777777777777777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 197 DNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 197 elleq~qaMEknL~~marEvekLrAEIanae 227 (312)
..++.=+.+-..+.++++|--.|+.+|.|..
T Consensus 199 ~~L~~Ye~lg~~F~~ivreY~~l~~~ie~k~ 229 (238)
T PF14735_consen 199 QRLESYEGLGPEFEEIVREYTDLQQEIENKR 229 (238)
T ss_pred HHHHHHhcccHhHHHHHHHHHHHHHHHHHHH
Confidence 7777778888889999999999999998743
No 447
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=76.64 E-value=1.1e+02 Score=32.61 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=19.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 196 IDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 196 ~elleq~qaMEknL~~marEvekLrAEIanae 227 (312)
.+.++++...+.++..+..++.++++++..+-
T Consensus 331 ~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A 362 (557)
T COG0497 331 KEELAQLDNSEESLEALEKEVKKLKAELLEAA 362 (557)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666665443
No 448
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=76.58 E-value=68 Score=30.17 Aligned_cols=109 Identities=26% Similarity=0.257 Sum_probs=69.8
Q ss_pred HHHHHHHHhhhhhHhhhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 021465 104 HIRVLLDKIAKMEADCKAGERLKK-----DLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLR 178 (312)
Q Consensus 104 qiR~L~ek~~k~Eaelra~e~lk~-----EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~Lr 178 (312)
++-++.+|+.+++..+.+.|-++- +-...-.=++-|...|-......+...+.|.+++.-.+.+...-..++..+
T Consensus 84 ~laev~eki~~l~~~~A~~e~l~L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~~kev~~aE~~~~~a~ 163 (218)
T cd07662 84 KVSELFDKTRKIEARVAADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKNKDVLQAETTQQLCC 163 (218)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 577888888888888766665441 222233556678888999999999999999999986555544444444444
Q ss_pred HHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHH
Q 021465 179 QEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAR 214 (312)
Q Consensus 179 qElq~~RaaiE~EKk~~~elleq~qaMEknL~~mar 214 (312)
++.+..=..+..|.... ....+..+.++|+.+..
T Consensus 164 ~~Fe~IS~~aK~El~rF--~~~Rv~~Fkk~Lv~y~E 197 (218)
T cd07662 164 QKFEKISESAKQELIDF--KTRRVAAFRKNLVELAE 197 (218)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 44444444333333322 22344778888888766
No 449
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=76.49 E-value=41 Score=27.61 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 180 EHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 180 Elq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanae 227 (312)
...++...++.|.+.+.+....+..+...+..|..++.++...|....
T Consensus 61 k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 61 KRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445556666666666666666666666666666666665543
No 450
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.25 E-value=36 Score=34.11 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=6.4
Q ss_pred HHHHHHHHHhhhhhh
Q 021465 52 IAVQAAEIERLARDN 66 (312)
Q Consensus 52 l~~q~~Ei~~L~~dN 66 (312)
+.....|+.++.++=
T Consensus 220 R~r~eeeme~~~aeq 234 (365)
T KOG2391|consen 220 RRRREEEMERLQAEQ 234 (365)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 451
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=76.25 E-value=63 Score=29.65 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=16.5
Q ss_pred HHHHhhhhhHhhhhhHHHHHHHHHHHHHH
Q 021465 108 LLDKIAKMEADCKAGERLKKDLQQAHIEA 136 (312)
Q Consensus 108 L~ek~~k~Eaelra~e~lk~EL~q~r~e~ 136 (312)
|.+|..+++.+|...+.+|.+.+.+..+.
T Consensus 82 Le~R~~~I~~~L~~Ae~~k~eAe~~~~~y 110 (204)
T PRK09174 82 IETRRDRIAQDLDQAARLKQEADAAVAAY 110 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666665555443
No 452
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=76.16 E-value=0.96 Score=37.47 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHH
Q 021465 48 LEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIK 91 (312)
Q Consensus 48 lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~ 91 (312)
.++.|.....++..|..+|..|......|+..|..++.....|.
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~ 66 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQ 66 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 45555555556666665555555555444444444444433333
No 453
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=75.94 E-value=29 Score=30.97 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=15.4
Q ss_pred cHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 195 NIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 195 ~~elleq~qaMEknL~~marEvekLrAEIanae 227 (312)
....-++++.++++|.....+++.|+.++.+..
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555555444433
No 454
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=75.89 E-value=1.2e+02 Score=32.84 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHH
Q 021465 168 PDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMA 213 (312)
Q Consensus 168 ~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~ma 213 (312)
..++.++..+++++..++..+..-.+..++.+..+...-+.|.+..
T Consensus 244 ~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 289 (670)
T KOG0239|consen 244 QALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLE 289 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433333333
No 455
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=75.68 E-value=56 Score=28.74 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=13.4
Q ss_pred HHHHhhhhhHhhhhhHHHHHHHHHHHHHH
Q 021465 108 LLDKIAKMEADCKAGERLKKDLQQAHIEA 136 (312)
Q Consensus 108 L~ek~~k~Eaelra~e~lk~EL~q~r~e~ 136 (312)
|.+|-.++..++...+..+.+..+...+.
T Consensus 48 l~~R~~~I~~~l~~A~~~~~ea~~~~~~~ 76 (174)
T PRK07352 48 LEERREAILQALKEAEERLRQAAQALAEA 76 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555554444433
No 456
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=75.51 E-value=81 Score=31.55 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 021465 73 HITMREDLAAAQQEIPRIKA 92 (312)
Q Consensus 73 h~~L~qeL~aaq~Elq~L~~ 92 (312)
....+-.|+++...+..+.+
T Consensus 93 l~qAea~la~a~~~~~~~~a 112 (352)
T COG1566 93 LEQAEAALAAAEAQLRNLRA 112 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555544444
No 457
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.39 E-value=1.3e+02 Score=32.88 Aligned_cols=6 Identities=50% Similarity=0.817 Sum_probs=3.5
Q ss_pred hhHHHH
Q 021465 47 LLEDKI 52 (312)
Q Consensus 47 ~lE~~l 52 (312)
.+++.+
T Consensus 66 ~~~~~l 71 (716)
T KOG4593|consen 66 QLEDEL 71 (716)
T ss_pred HHHHHH
Confidence 566654
No 458
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=75.28 E-value=48 Score=27.78 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=40.9
Q ss_pred HHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Q 021465 107 VLLDKIAKMEADCKAGERLKKDLQQAHIEAQS-LARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLR 185 (312)
Q Consensus 107 ~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~-L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~R 185 (312)
-|.+|..++..++...+.++.+..+...+.+. |...+.+-..-+...+.+..+.+. ..+...+. .+.+.+..++
T Consensus 33 ~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~--~~~~~a~~---ea~~~~~~a~ 107 (140)
T PRK07353 33 VVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAA--EALAEAQA---EAQASKEKAR 107 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH---HHHHHHHHHH
Confidence 35566667777777777777777766655543 333333333333344444433333 11122222 2223344455
Q ss_pred HHHHHHHhhc
Q 021465 186 ATFEYEKGLN 195 (312)
Q Consensus 186 aaiE~EKk~~ 195 (312)
..|+.|++.-
T Consensus 108 ~~i~~e~~~a 117 (140)
T PRK07353 108 REIEQQKQAA 117 (140)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 459
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=75.02 E-value=93 Score=30.97 Aligned_cols=124 Identities=18% Similarity=0.228 Sum_probs=79.7
Q ss_pred HHHHHHHHHhhhhhHhhhh--------------------hHHHHH--------HHHHHHHHHHHHH-------------H
Q 021465 103 SHIRVLLDKIAKMEADCKA--------------------GERLKK--------DLQQAHIEAQSLA-------------R 141 (312)
Q Consensus 103 ~qiR~L~ek~~k~Eaelra--------------------~e~lk~--------EL~q~r~e~q~L~-------------~ 141 (312)
..+.+|+.++..+|.-++. ++-|+. -|.++.+.++++. .
T Consensus 191 akVA~LE~Rlt~lE~vvg~~~d~~~~lsa~~~~a~vletVe~L~~k~s~l~~~~ld~vEqRL~s~lgK~~~IaEk~~~s~ 270 (371)
T KOG3958|consen 191 AKVAELEKRLTELETVVGCDQDAQNPLSAGLQGACVLETVELLQAKVSALDLAVLDQVEQRLQSVLGKVNEIAEKHKASV 270 (371)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCchhhccCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 5677788888888766544 333332 2334444444443 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH-------------HHHHHHHHHHHHHHhhcHHhHHHH-HHHHH
Q 021465 142 ARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLR-------------QEHRRLRATFEYEKGLNIDNVEQL-QAMEK 207 (312)
Q Consensus 142 ~rqeL~aevq~l~~EL~r~kad~qql~alraELe~Lr-------------qElq~~RaaiE~EKk~~~elleq~-qaMEk 207 (312)
+|-++-.+|..+-.-+.|-.--..-||.+-.-+.+++ .+|...|..|+.+.+-+.+++-|. -+|.+
T Consensus 271 ~Da~~d~KV~elye~~qrw~pi~stLP~~V~rl~al~~LHeqa~~Fa~~lthl~t~q~~i~~sl~~n~ell~~vqtt~~q 350 (371)
T KOG3958|consen 271 EDADTDSKVHELYETIQRWSPIASTLPELVQRLVALKQLHEQAMQFAQLLTHLDTTQQMIANSLKDNTELLTQVQTTMRQ 350 (371)
T ss_pred ccchhhhhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 3344445566665555554333335565555554444 566677888999999999999999 67999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021465 208 NLVGMAREMEKLHAEVVNA 226 (312)
Q Consensus 208 nL~~marEvekLrAEIana 226 (312)
||.+....+.+|.+-++..
T Consensus 351 nl~tV~~k~a~ie~rva~l 369 (371)
T KOG3958|consen 351 NLATVEGKFASIEERVAKL 369 (371)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999988888887776643
No 460
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=75.02 E-value=24 Score=37.31 Aligned_cols=11 Identities=18% Similarity=0.552 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 021465 179 QEHRRLRATFE 189 (312)
Q Consensus 179 qElq~~RaaiE 189 (312)
+.+.+++..+.
T Consensus 262 ~D~~~L~~~~~ 272 (555)
T TIGR03545 262 NDLKRLENKYA 272 (555)
T ss_pred hHHHHHHHHhC
Confidence 44445554433
No 461
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=74.72 E-value=53 Score=28.67 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=23.0
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 116 EADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEAL 157 (312)
Q Consensus 116 Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL 157 (312)
.++.+.++.....|.+....+..+.+.|+.-+.++....++|
T Consensus 53 ~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~l 94 (135)
T TIGR03495 53 LALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDL 94 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 334455555555666666666666666655555544444443
No 462
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=74.66 E-value=1e+02 Score=34.68 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 203 qaMEknL~~marEvekLrAEIan 225 (312)
....|.+..|.+|+++|+++|-.
T Consensus 1012 Ee~kKe~eaiineiee~eaeIiQ 1034 (1424)
T KOG4572|consen 1012 EEKKKELEAIINEIEELEAEIIQ 1034 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566677777777777777653
No 463
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=74.65 E-value=5.3 Score=35.24 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Q 021465 121 AGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRAT 187 (312)
Q Consensus 121 a~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~Raa 187 (312)
....++.|+.+++.|..++.++|+ -++...+++.++++. +||+.+++++...++.
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDe--FAkwaKl~Rk~~kl~----------~el~~~~~~~~~~~~~ 95 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDE--FAKWAKLNRKLDKLE----------EELEKLNKSLSSEKSS 95 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTS--HHHHHHHHHHHHHHH----------HHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHH--HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 345577777777777777666552 344444444444433 4555555555444443
No 464
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=74.09 E-value=57 Score=28.10 Aligned_cols=103 Identities=17% Similarity=0.244 Sum_probs=0.0
Q ss_pred hhhhH-HHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHH----
Q 021465 69 LAASH-ITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARAR---- 143 (312)
Q Consensus 69 La~th-~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~r---- 143 (312)
++++- ..+.-++.++..|++.|.. +.+.+-...-.....+++.|-....+++++++.-..+......|
T Consensus 17 faA~~~~~v~~~l~~LEae~q~L~~-------kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~ 89 (126)
T PF09403_consen 17 FAATATASVESELNQLEAEYQQLEQ-------KEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKD 89 (126)
T ss_dssp ------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHH
T ss_pred HHcccchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHH
Q ss_pred --HHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 021465 144 --QELTSKIQQASEALHKARLEVKNLPDLHAELDSLR 178 (312)
Q Consensus 144 --qeL~aevq~l~~EL~r~kad~qql~alraELe~Lr 178 (312)
++|+.+++.+.++|++.=++.+++-..-..|..+|
T Consensus 90 eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~i~~~~ 126 (126)
T PF09403_consen 90 EYKELLKKYKDLLNKLDKEIAEQEQIIDNFEKIQSLR 126 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 465
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=74.09 E-value=21 Score=29.55 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 125 LKKDLQQAHIEAQSLARARQELTSKIQQA 153 (312)
Q Consensus 125 lk~EL~q~r~e~q~L~~~rqeL~aevq~l 153 (312)
+...+++++.+++.|.....+|...+..+
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~ 32 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAEL 32 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444444333
No 466
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=74.06 E-value=45 Score=32.01 Aligned_cols=86 Identities=20% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 75 TMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQAS 154 (312)
Q Consensus 75 ~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~ 154 (312)
.|+++|.-.-.+++.|.....++. +.|||.+-... |.||-+-..++-+-+==...-+.+.++.-.|.
T Consensus 161 ~l~~eLqkr~~~v~~l~~q~~k~~---~~qv~~in~ql----------ErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq 227 (289)
T COG4985 161 PLERELQKRLLEVETLRDQVDKMV---EQQVRVINSQL----------ERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQ 227 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH----------HHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHH
Q 021465 155 EALHKARLEVKNLPDLHAELDSLRQEHRR 183 (312)
Q Consensus 155 ~EL~r~kad~qql~alraELe~LrqElq~ 183 (312)
++++..+ .+|++|++|+.+
T Consensus 228 ~r~~~l~----------~~L~~L~~e~~r 246 (289)
T COG4985 228 KRLAQLQ----------TELDALRAELER 246 (289)
T ss_pred HHHHHHH----------HHHHHHhhhhhh
No 467
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=73.94 E-value=32 Score=31.73 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 66 NHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQE 145 (312)
Q Consensus 66 NqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqe 145 (312)
|..|...+..|+++|..++++|+.++..-..-+.+-...++.|..+-.. -+..+-.+.....+++.++..|.....+
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~---~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKE---LVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 021465 146 LTSKIQ 151 (312)
Q Consensus 146 L~aevq 151 (312)
+-.+.+
T Consensus 215 ~~~~~~ 220 (221)
T PF05700_consen 215 LKENQQ 220 (221)
T ss_pred Hhcccc
No 468
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=73.93 E-value=20 Score=33.32 Aligned_cols=61 Identities=16% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH----HHHHHHHHHHHHHH
Q 021465 132 AHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLR----QEHRRLRATFEYEK 192 (312)
Q Consensus 132 ~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~Lr----qElq~~RaaiE~EK 192 (312)
...|.+.|.++...|-.+...++.+-.+...+.+++-+.|+++..+. ++++..|..++.||
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekek 100 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQ 100 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=73.88 E-value=36 Score=34.00 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 021465 213 AREMEKLHAEVVNA 226 (312)
Q Consensus 213 arEvekLrAEIana 226 (312)
..++..+++.+..+
T Consensus 189 ~~~v~~a~a~~~~A 202 (352)
T COG1566 189 QAQVASAEAALDQA 202 (352)
T ss_pred hhHHHHHHHHHHHH
Confidence 33444444444333
No 470
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=73.80 E-value=99 Score=30.72 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 021465 173 ELDSLRQEHRRLRA 186 (312)
Q Consensus 173 ELe~LrqElq~~Ra 186 (312)
+++..+.++..+++
T Consensus 159 ~ld~a~~~~~~a~a 172 (390)
T PRK15136 159 ELQHARDAVASAQA 172 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 471
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=73.80 E-value=14 Score=35.42 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 100 ESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARL 162 (312)
Q Consensus 100 e~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~ka 162 (312)
|-|.+|++|.|.. +.|..|-+-+|....+|.+..++|..++..++++|...+.
T Consensus 94 eme~~i~dL~een----------~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 94 EMEYEIKDLTEEN----------EILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence 3466777777766 4456666666777777888888888887777777776663
No 472
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=73.55 E-value=74 Score=29.18 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=9.3
Q ss_pred hhhhhhhhhhhHHHHHHHHH
Q 021465 62 LARDNHRLAASHITMREDLA 81 (312)
Q Consensus 62 L~~dNqrLa~th~~L~qeL~ 81 (312)
|+.+...++..|..+-+.|.
T Consensus 70 i~~e~~~~a~~H~~~a~~l~ 89 (251)
T cd07653 70 ILNEVNDIAGQHELIAENLN 89 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444555544444443
No 473
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=73.51 E-value=30 Score=28.60 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021465 203 QAMEKNLVGMAREMEKLHAE 222 (312)
Q Consensus 203 qaMEknL~~marEvekLrAE 222 (312)
+.+++++..+.+++..+...
T Consensus 103 ~~l~~~l~~l~~~~~~i~~~ 122 (126)
T TIGR00293 103 EKLQEALAELASRAQQLEQE 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 474
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=73.31 E-value=69 Score=28.67 Aligned_cols=62 Identities=23% Similarity=0.236 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021465 127 KDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEY 190 (312)
Q Consensus 127 ~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~ 190 (312)
.-+.++..++.+....-+.|.+.++.....|...... +-..+..+|+.+.+-+.++|.+|+.
T Consensus 102 ~~~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~~~~--~~~~lq~ei~a~e~RL~RCr~Ai~~ 163 (173)
T PF07445_consen 102 KPIHQLYQRLAQHQEYERRLLAMIQEREQQLEQAQSF--EQQQLQQEILALEQRLQRCRQAIEK 163 (173)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666677777777777777665543 4566778899999999999998663
No 475
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=73.19 E-value=94 Score=30.18 Aligned_cols=116 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHhhhhhchh---hHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 78 EDLAAAQQEIPRIKAHIRNIHTES---DSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQAS 154 (312)
Q Consensus 78 qeL~aaq~Elq~L~~~~~~~~ae~---e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~ 154 (312)
.+|...-.=|--|...+.++...- -.++|....-+...| .++.+.|+.-..+..+|++|..-+-+ ..++..|+
T Consensus 96 ddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E---~sl~p~R~~r~~l~d~I~kLk~k~P~-s~kl~~Le 171 (271)
T PF13805_consen 96 DDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNRE---ESLQPSRDRRRKLQDEIAKLKYKDPQ-SPKLVVLE 171 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-TT-TTTHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHhHHHHHHHHHHHhcCCC-ChHHHHHH
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 155 EALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 155 ~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
+||.++.+ +.-..-++|..++.+ ..|.++.+.-++..|.=|.+
T Consensus 172 qELvraEa---e~lvaEAqL~n~kR~--~lKEa~~~~f~Al~E~aEK~ 214 (271)
T PF13805_consen 172 QELVRAEA---ENLVAEAQLSNIKRQ--KLKEAYSLKFDALIERAEKQ 214 (271)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HhhHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHH
No 476
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=73.18 E-value=20 Score=25.23 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Q 021465 153 ASEALHKARLEVKNLPDLHAELDSLRQEHRR 183 (312)
Q Consensus 153 l~~EL~r~kad~qql~alraELe~LrqElq~ 183 (312)
+++||.+.+. .-|+++++|+.+
T Consensus 16 vrkEl~K~K~---------EIIeA~~~eL~r 37 (40)
T PF08776_consen 16 VRKELQKVKE---------EIIEAIRQELSR 37 (40)
T ss_dssp HHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------HHHHHHHHHHhc
Confidence 3556666554 334555555544
No 477
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=73.12 E-value=31 Score=35.02 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 119 CKAGERLKKDLQQAHIEAQSLARARQELTSKIQQ 152 (312)
Q Consensus 119 lra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~ 152 (312)
+-.+-.+..+..++..+++.|.+.+++++.++..
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555556666666666666666666644
No 478
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=73.11 E-value=1.2e+02 Score=31.50 Aligned_cols=31 Identities=13% Similarity=0.361 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhchhhHHHH
Q 021465 76 MREDLAAAQQEIPRIKAHIRNIHTESDSHIR 106 (312)
Q Consensus 76 L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR 106 (312)
+..-+..++.++..|...+..++.+.+..+.
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~ 279 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAELKEEEEEELE 279 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666665555555555544443
No 479
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=73.09 E-value=47 Score=28.77 Aligned_cols=36 Identities=36% Similarity=0.547 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 167 LPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 167 l~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
|..++.+++.++.|+..+|..+-.-+=...+.++++
T Consensus 62 l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeL 97 (126)
T PF07028_consen 62 LKELKQELDVLSKELQALRKEYLERRPLTKEDVEEL 97 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 344445556666666666665544444444444444
No 480
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=73.06 E-value=76 Score=29.06 Aligned_cols=17 Identities=18% Similarity=-0.056 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhhc
Q 021465 179 QEHRRLRATFEYEKGLN 195 (312)
Q Consensus 179 qElq~~RaaiE~EKk~~ 195 (312)
+.+..++..++.|++..
T Consensus 144 ~ii~~A~~~Ie~Ek~~a 160 (205)
T PRK06231 144 LIIFQARQEIEKERREL 160 (205)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555566666655554
No 481
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=73.00 E-value=57 Score=27.61 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=12.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 021465 166 NLPDLHAELDSLRQEHRRLRAT 187 (312)
Q Consensus 166 ql~alraELe~LrqElq~~Raa 187 (312)
.+..++.+|+.|+.+|..+|..
T Consensus 89 ~i~~~k~~ie~lk~~L~~ak~~ 110 (139)
T PF05615_consen 89 EIEQAKKEIEELKEELEEAKRV 110 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666554
No 482
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=72.93 E-value=1.3e+02 Score=31.67 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 021465 212 MAREMEKLHAEVVNAE 227 (312)
Q Consensus 212 marEvekLrAEIanae 227 (312)
+..+...++..|...-
T Consensus 155 Lk~e~~~lr~~L~~~L 170 (593)
T PF06248_consen 155 LKDEYSELRENLQYQL 170 (593)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566666665444
No 483
>PLN02678 seryl-tRNA synthetase
Probab=72.70 E-value=28 Score=35.79 Aligned_cols=28 Identities=11% Similarity=0.223 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 198 NVEQLQAMEKNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 198 lleq~qaMEknL~~marEvekLrAEIan 225 (312)
++++++.+.+.+..+..++.++..+|..
T Consensus 76 l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 76 LIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555555555555554
No 484
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=72.62 E-value=21 Score=27.88 Aligned_cols=41 Identities=24% Similarity=0.488 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Q 021465 133 HIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAE 173 (312)
Q Consensus 133 r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraE 173 (312)
..++..|.....+|..+++...++|.+.+.+.+++..+++.
T Consensus 2 ~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~ 42 (69)
T PF08912_consen 2 TKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQ 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888889999988888888888654444444443
No 485
>PLN02320 seryl-tRNA synthetase
Probab=72.56 E-value=40 Score=35.34 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=15.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 197 DNVEQLQAMEKNLVGMAREMEKLHAEVVN 225 (312)
Q Consensus 197 elleq~qaMEknL~~marEvekLrAEIan 225 (312)
+++++++.+.+.+..+..++..+..+|..
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555554
No 486
>PLN02678 seryl-tRNA synthetase
Probab=72.45 E-value=33 Score=35.38 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 120 KAGERLKKDLQQAHIEAQSLARARQELTSKIQQ 152 (312)
Q Consensus 120 ra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~ 152 (312)
-.+-.+..+..++..++..|.+.++.++.++..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555566666666666666666654
No 487
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=72.10 E-value=46 Score=26.15 Aligned_cols=83 Identities=16% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHh----------------hhhhHHHHHHHHHHHHHHH
Q 021465 74 ITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEAD----------------CKAGERLKKDLQQAHIEAQ 137 (312)
Q Consensus 74 ~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eae----------------lra~e~lk~EL~q~r~e~q 137 (312)
..+...+..++.+++.+...+..+..+.. .+....+-...++.+ -...+.|+.....+..++.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~-~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~ 79 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLR-ELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIK 79 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 021465 138 SLARARQELTSKIQQASEAL 157 (312)
Q Consensus 138 ~L~~~rqeL~aevq~l~~EL 157 (312)
+|......+..++..+...|
T Consensus 80 ~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 80 KLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 488
>smart00338 BRLZ basic region leucin zipper.
Probab=72.10 E-value=28 Score=25.72 Aligned_cols=51 Identities=22% Similarity=0.368 Sum_probs=0.0
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021465 116 EADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKN 166 (312)
Q Consensus 116 Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qq 166 (312)
+|--+..+.=+..+.++..+++.|.....+|..++..++.++...+..+..
T Consensus 15 ~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~~ 65 (65)
T smart00338 15 EAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELEE 65 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 489
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.92 E-value=1.8e+02 Score=32.81 Aligned_cols=177 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHH------HHHHHHhhhhhHhhhhhHH
Q 021465 51 KIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHI------RVLLDKIAKMEADCKAGER 124 (312)
Q Consensus 51 ~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qi------R~L~ek~~k~Eaelra~e~ 124 (312)
.+.....++......-..+...+..+.+.+......+......+..+..+....- ..+......+.........
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (1042)
T TIGR00618 287 NRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATS 366 (1042)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHH
Q 021465 125 LKKDLQQAHIEAQSLARARQE---LTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQ 201 (312)
Q Consensus 125 lk~EL~q~r~e~q~L~~~rqe---L~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq 201 (312)
....+.+.....+.+.....+ ...+++...+.+........++..+...+..+++++..++..... .....++-.+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~ 445 (1042)
T TIGR00618 367 IREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQEL-QQRYAELCAA 445 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHH
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 021465 202 LQAMEK-NLVGMAREMEKLHAEVVNAEM 228 (312)
Q Consensus 202 ~qaMEk-nL~~marEvekLrAEIanaek 228 (312)
...... .+.....++..++..+.....
T Consensus 446 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 473 (1042)
T TIGR00618 446 AITCTAQCEKLEKIHLQESAQSLKEREQ 473 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.90 E-value=1.4e+02 Score=32.42 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHh---------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 77 REDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEAD---------CKAGERLKKDLQQAHIEAQSLARARQELT 147 (312)
Q Consensus 77 ~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eae---------lra~e~lk~EL~q~r~e~q~L~~~rqeL~ 147 (312)
.-.|.+++-+|++|+.-|.++.-++|. |.-|+..||++ ++-.-.+|-.++-+.-+-+ ....+-++.
T Consensus 331 ~~Q~~~~~~~~~~~~Tr~Er~Er~~D~----L~rri~~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r-~i~~~~~~~ 405 (852)
T KOG4787|consen 331 HLQLELAESQVQHLNTKIERLEKTNDH----LNKKIVELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSK-MIVTISELE 405 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHhhhhcccchHHHHHHhhhhhcChHhHhHHHH-HHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhc-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 148 SKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLN-IDNVEQLQAMEKNLVGMAREMEKLHAEVVNA 226 (312)
Q Consensus 148 aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~-~elleq~qaMEknL~~marEvekLrAEIana 226 (312)
..--.++....++++-.+--|.+..+-..-+.||...++.+..-+..+ .+-+.+++.+.++|+.-.+.--=|.--|..+
T Consensus 406 ~~~~~~s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~K~ 485 (852)
T KOG4787|consen 406 RKNLELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLNKL 485 (852)
T ss_pred HhcccHHHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHhHH
Q ss_pred HHh
Q 021465 227 EMR 229 (312)
Q Consensus 227 ekr 229 (312)
+.+
T Consensus 486 ~R~ 488 (852)
T KOG4787|consen 486 HRK 488 (852)
T ss_pred HHH
No 491
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=71.90 E-value=17 Score=34.49 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHH-----------
Q 021465 73 HITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLAR----------- 141 (312)
Q Consensus 73 h~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~----------- 141 (312)
+..|+++|..+..++..... -+..|++...++++........-.-..-...-...+..
T Consensus 1 l~~lq~~l~~l~~~~~~~~~-----------L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~s 69 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKE-----------LNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTS 69 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCc
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHH
Q 021465 142 ------ARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAME 206 (312)
Q Consensus 142 ------~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaME 206 (312)
.+..|+.=|...+.-+-. ...+|-.|+-.+++++..+|..++.-++.|.+++|.++-+.
T Consensus 70 s~~~~~~~~siLpIVtsQRDRFR~------Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 70 SIIGGGGDSSILPIVTSQRDRFRQ------RNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 492
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=71.85 E-value=54 Score=26.88 Aligned_cols=108 Identities=14% Similarity=0.194 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 72 SHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQ 151 (312)
Q Consensus 72 th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq 151 (312)
....-++++...+..|..-+..+......-...-..|.++-..|+.++...+..-.+-..-+..+.+-......+..+..
T Consensus 1 ~li~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~ 80 (126)
T PF13863_consen 1 ELIEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKE 80 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Q 021465 152 QASEALHKARLEVKNLPDLHAELDSLRQEHRRLR 185 (312)
Q Consensus 152 ~l~~EL~r~kad~qql~alraELe~LrqElq~~R 185 (312)
.-...|.. +|..++.++..+...+..+.
T Consensus 81 ~ei~~l~~------~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 81 AEIKKLKA------ELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHH
No 493
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=71.80 E-value=30 Score=25.58 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=0.0
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021465 116 EADCKAGERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEV 164 (312)
Q Consensus 116 Eaelra~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~ 164 (312)
+|--+..+.=+..+.++...+..|......|..++..+..++..++.++
T Consensus 15 ~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 15 EAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 494
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.79 E-value=1.4e+02 Score=31.66 Aligned_cols=192 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH-------HHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhh
Q 021465 50 DKIAVQAAEIERLARDNHRLAASHITMREDLAAAQ-------QEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAG 122 (312)
Q Consensus 50 ~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq-------~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~ 122 (312)
+++..-.. ++-|..++-.|-.....|+--++... .++..++..+...+++ ++.|+.-..+.....+
T Consensus 225 ~kl~~EqQ-lq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~------e~~e~rk~v~k~~~l~ 297 (613)
T KOG0992|consen 225 GKLNSEQQ-LQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAE------ETTEKRKAVKKRDDLI 297 (613)
T ss_pred HhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHH
Q 021465 123 ERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQL 202 (312)
Q Consensus 123 e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~ 202 (312)
+..+..+.+++ .++.+...+.+...-+..+..||--+....+.-.....++..++.+++..-.....++-...+....-
T Consensus 298 q~~~~~~~eL~-K~kde~~~n~~~~~lie~lq~el~~al~~c~eeN~~~t~~n~e~~~lq~~etek~ee~tlla~~~dr~ 376 (613)
T KOG0992|consen 298 QSRKQVSFELE-KAKDEIKQNDDKVKLIEELQDELSVALKECREENKIETQVNFERNKLQNEETEKKEEKTLLAAADDRF 376 (613)
T ss_pred HHHHHHHHHHH-HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCCCCCCCCCCCCCCCCCCC
Q 021465 203 --------QAMEKNLVGMAREMEKLHAEVVNAEMRGHAPNPYSRTYTNPIPSYPPSVQGGGVYVD 259 (312)
Q Consensus 203 --------qaMEknL~~marEvekLrAEIanaekra~a~~~y~~~~~n~~~~~~~~~~g~~~y~~ 259 (312)
|..++--+.....-+|.-+-|...+.... .|-.+.+-++ +..++|.|
T Consensus 377 se~~e~teqkleelk~~f~a~q~K~a~tikeL~~El~---~yrr~i~~~~-------s~ia~~~~ 431 (613)
T KOG0992|consen 377 SEYSELTEQKLEELKVQFTAKQEKHAETIKELEIELE---EYRRAILRNA-------SEIAQYED 431 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccccc-------cccCCCCc
No 495
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.71 E-value=52 Score=31.48 Aligned_cols=98 Identities=18% Similarity=0.197 Sum_probs=0.0
Q ss_pred HhhhhhHhhhhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH
Q 021465 111 KIAKMEADCKAGE------RLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRL 184 (312)
Q Consensus 111 k~~k~Eaelra~e------~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~ 184 (312)
|++-.-|-|+.+. -+|..++..+..++.+...+.+|+.+...+..+++..+. .|..+..|...|..++.++
T Consensus 113 ~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~e---rlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 113 KNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQE---RLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHHHhhcHHhHHHHHHHHHHHHH
Q 021465 185 RATFEYEKGLNIDNVEQLQAMEKNLVG 211 (312)
Q Consensus 185 RaaiE~EKk~~~elleq~qaMEknL~~ 211 (312)
-..+..-++...++-..+...+.-+++
T Consensus 190 ~~ev~~L~~r~~ELe~~~El~e~~~i~ 216 (290)
T COG4026 190 PGEVYDLKKRWDELEPGVELPEEELIS 216 (290)
T ss_pred hhHHHHHHHHHHHhcccccchHHHHHH
No 496
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=71.64 E-value=94 Score=29.55 Aligned_cols=127 Identities=20% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------Hhccc
Q 021465 129 LQQAHIEAQSLARARQELTSKIQQASEALHKAR------------------------------------------LEVKN 166 (312)
Q Consensus 129 L~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~k------------------------------------------ad~qq 166 (312)
|++++.++.++.+.-.+...-+..|..||.+.. .+..-
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccccCCCCCC
Q 021465 167 LPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHAPNPYSRTYTNPIPS 246 (312)
Q Consensus 167 l~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanaekra~a~~~y~~~~~n~~~~ 246 (312)
||.+...-|..|+-...+.. ++....+.+..+.+|+++|+++=.+.-.+.| |=.+|.++
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~--------------elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR----ylqSY~~~--- 139 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEE--------------ELRKQQQTISSLRREVESLRADNVKLYEKIR----YLQSYNNK--- 139 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhCccc---
Q ss_pred CCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCCccccccCCCCCC
Q 021465 247 YPPSVQGGGVYVDGYSQPLLQMGVVQTGEGMIPYGSGNGVAAASGVGMPA 296 (312)
Q Consensus 247 ~~~~~~g~~~y~~~Yg~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 296 (312)
..+......+..|..+...+++..+.+...
T Consensus 140 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~ 169 (248)
T PF08172_consen 140 --------------------GSGSSSSAVSNSPGRSSVSPEPGGSSDVES 169 (248)
T ss_pred --------------------ccCCCcccccCCCCcccCCCCCCCCCchhH
No 497
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=71.59 E-value=87 Score=29.52 Aligned_cols=105 Identities=14% Similarity=0.164 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----hhHHHHHHHHHHHHHHHHHH-HHHHHhhc
Q 021465 122 GERLKKDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNL-----PDLHAELDSLRQEHRRLRAT-FEYEKGLN 195 (312)
Q Consensus 122 ~e~lk~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql-----~alraELe~LrqElq~~Raa-iE~EKk~~ 195 (312)
+.++..=+..-.-.+-+....+-++..=...++.+|++.+.+++.+ ..+++|-|.|+-|+++.|.. .+.=.+.+
T Consensus 68 t~aiT~v~ndsl~~vsk~~vtkaqq~~v~~QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~ 147 (220)
T KOG3156|consen 68 TSAITTVLNDSLETVSKELVTKAQQEKVSYQQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISKTT 147 (220)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred HHhHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 021465 196 IDNVEQL----------------QAMEKNLVGMAREMEKLHAEVVNAE 227 (312)
Q Consensus 196 ~elleq~----------------qaMEknL~~marEvekLrAEIanae 227 (312)
.+.-=++ +.-|-. ....+|+..|+++|..++
T Consensus 148 a~~rLdLNLEkgr~~d~~~~~~l~~~e~s-~kId~Ev~~lk~qi~s~K 194 (220)
T KOG3156|consen 148 AEFRLDLNLEKGRIKDESSSHDLQIKEIS-TKIDQEVTNLKTQIESVK 194 (220)
T ss_pred hhceeecchhhccccchhhhcchhHhHHH-HHHHHHHHHHHHHHHHHH
No 498
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.58 E-value=36 Score=26.84 Aligned_cols=66 Identities=21% Similarity=0.162 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 021465 167 LPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAMEKNLVGMAREMEKLHAEVVNAEMRGHA 232 (312)
Q Consensus 167 l~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaMEknL~~marEvekLrAEIanaekra~a 232 (312)
++.|-+-+...-.-|.-++-.||.-|..++.+..+.+....+...+.++-+.|..|-.++..|.|+
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=71.45 E-value=91 Score=29.27 Aligned_cols=172 Identities=23% Similarity=0.273 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH-HHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHH
Q 021465 48 LEDKIAVQAAEIERLARDNHRLAASHITMREDLA-AAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLK 126 (312)
Q Consensus 48 lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~-aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk 126 (312)
|+..|.--+.=+.+|..-.+.|+.++..+-..|. .+-+|--.|......+ +|.+..|+.++.+.+.=| ++.-.|.|+
T Consensus 35 l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~~ee~t~L~kals~l-ae~~Ek~~~l~~r~A~~d-~~~L~e~L~ 112 (218)
T cd07663 35 YYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSVAAEEPTVIKKYLLKV-AELFEKLRKVEDRVASDQ-DLKLTELLR 112 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHH-HHHHHHHHHHHHHHHHhH-HhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHhhcHHhHHHHHHHH
Q 021465 127 KDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLRQEHRRLRATFEYEKGLNIDNVEQLQAME 206 (312)
Q Consensus 127 ~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~LrqElq~~RaaiE~EKk~~~elleq~qaME 206 (312)
+-..+-.=++-+...|-......+...+-|.+++...+.|++...++...+++.++.=..+..|.... .......|.
T Consensus 113 -~Y~r~~~A~K~ll~rR~ral~~~e~A~~~L~KaR~k~kev~~aE~~~~ea~~~Fe~IS~~~k~El~rF--~~~Rv~~Fk 189 (218)
T cd07663 113 -YYMLNIEAAKDLLYRRARALADYENSNKALDKARLKSKDVKQAEAHQQECCQKFEKLSESAKQELISF--KRRRVAAFR 189 (218)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q ss_pred HHHHHHHH-HHHHHHHHHH
Q 021465 207 KNLVGMAR-EMEKLHAEVV 224 (312)
Q Consensus 207 knL~~mar-EvekLrAEIa 224 (312)
++|+.++. ++..-+..+.
T Consensus 190 ~~lve~~E~~ik~ak~~~~ 208 (218)
T cd07663 190 KNLIEMTELEIKHAKNNVS 208 (218)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 500
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=71.17 E-value=80 Score=33.32 Aligned_cols=98 Identities=14% Similarity=0.280 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHhhhhhchhhHHHHHHHHHhhhhhHhhhhhHHHH
Q 021465 47 LLEDKIAVQAAEIERLARDNHRLAASHITMREDLAAAQQEIPRIKAHIRNIHTESDSHIRVLLDKIAKMEADCKAGERLK 126 (312)
Q Consensus 47 ~lE~~l~~q~~Ei~~L~~dNqrLa~th~~L~qeL~aaq~Elq~L~~~~~~~~ae~e~qiR~L~ek~~k~Eaelra~e~lk 126 (312)
..+.||.--..++|..-.-+.++...-.+|...|..+.++.+.+.. +++++-.++..|+
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~e-----------eL~~a~~~i~~Lq---------- 475 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEE-----------ELKEANQNISRLQ---------- 475 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Q 021465 127 KDLQQAHIEAQSLARARQELTSKIQQASEALHKARLEVKNLPDLHAELDSLR 178 (312)
Q Consensus 127 ~EL~q~r~e~q~L~~~rqeL~aevq~l~~EL~r~kad~qql~alraELe~Lr 178 (312)
..|...|..=-.|+..|++-|.-... +|...+.||+.||
T Consensus 476 ----------DEL~TTr~NYE~QLs~MSEHLasmNe---qL~~Q~eeI~~LK 514 (518)
T PF10212_consen 476 ----------DELETTRRNYEEQLSMMSEHLASMNE---QLAKQREEIQTLK 514 (518)
T ss_pred ----------HHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Done!