Query 021467
Match_columns 312
No_of_seqs 393 out of 3144
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:11:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03291 Pox_MCEL: mRNA cappin 100.0 1.6E-59 3.4E-64 432.3 21.7 271 6-288 28-331 (331)
2 KOG1975 mRNA cap methyltransfe 100.0 6.9E-59 1.5E-63 410.5 20.5 272 7-294 90-375 (389)
3 COG2226 UbiE Methylase involve 99.9 5E-22 1.1E-26 174.3 13.9 181 21-240 40-225 (238)
4 PF01209 Ubie_methyltran: ubiE 99.9 3.4E-22 7.3E-27 176.6 11.4 165 29-240 45-221 (233)
5 PLN02396 hexaprenyldihydroxybe 99.8 2.1E-18 4.5E-23 159.0 15.1 161 31-241 131-291 (322)
6 PF12847 Methyltransf_18: Meth 99.8 2.8E-18 6.1E-23 134.2 11.8 109 31-147 1-112 (112)
7 KOG1540 Ubiquinone biosynthesi 99.8 6.1E-18 1.3E-22 146.5 13.5 160 31-236 100-278 (296)
8 PLN02233 ubiquinone biosynthes 99.8 1.4E-17 3.1E-22 149.9 15.7 109 30-148 72-184 (261)
9 COG2230 Cfa Cyclopropane fatty 99.8 7.4E-18 1.6E-22 150.6 12.8 203 29-288 70-272 (283)
10 PTZ00098 phosphoethanolamine N 99.8 1.4E-16 3E-21 143.6 20.1 157 29-246 50-209 (263)
11 PF08241 Methyltransf_11: Meth 99.7 1E-17 2.2E-22 126.3 10.0 95 36-144 1-95 (95)
12 PRK11036 putative S-adenosyl-L 99.7 3.7E-17 8E-22 146.8 15.2 178 24-246 37-217 (255)
13 PF07021 MetW: Methionine bios 99.7 3.6E-17 7.8E-22 137.7 14.0 166 23-242 5-170 (193)
14 PLN02244 tocopherol O-methyltr 99.7 1.4E-16 3.1E-21 148.7 19.5 109 30-148 117-225 (340)
15 COG2227 UbiG 2-polyprenyl-3-me 99.7 2.9E-18 6.4E-23 148.4 6.8 171 19-241 47-217 (243)
16 PF02353 CMAS: Mycolic acid cy 99.7 1.8E-16 3.9E-21 143.2 15.2 174 29-255 60-233 (273)
17 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.8E-16 3.9E-21 141.7 14.6 112 24-145 49-163 (247)
18 PF13847 Methyltransf_31: Meth 99.7 2.7E-16 5.9E-21 130.1 12.3 108 31-148 3-112 (152)
19 TIGR00740 methyltransferase, p 99.7 7.6E-16 1.7E-20 136.9 15.6 113 24-146 46-161 (239)
20 PF13489 Methyltransf_23: Meth 99.7 2.1E-16 4.6E-21 131.0 11.1 100 29-150 20-119 (161)
21 PRK11705 cyclopropane fatty ac 99.7 8.1E-16 1.7E-20 145.5 16.4 194 29-285 165-358 (383)
22 TIGR02752 MenG_heptapren 2-hep 99.7 2.2E-16 4.8E-21 139.4 11.4 107 30-147 44-152 (231)
23 PRK05785 hypothetical protein; 99.7 2.1E-16 4.5E-21 139.3 11.2 160 29-240 49-212 (226)
24 smart00828 PKS_MT Methyltransf 99.7 7.6E-16 1.6E-20 135.4 14.5 150 33-246 1-151 (224)
25 PF13649 Methyltransf_25: Meth 99.7 2.6E-16 5.6E-21 121.2 9.2 96 35-140 1-101 (101)
26 PRK11207 tellurite resistance 99.7 1.4E-15 3E-20 131.4 13.1 104 31-145 30-133 (197)
27 PRK15068 tRNA mo(5)U34 methylt 99.7 3.9E-15 8.5E-20 137.8 16.4 105 31-146 122-226 (322)
28 KOG1271 Methyltransferases [Ge 99.6 1.6E-15 3.5E-20 125.2 10.9 140 12-157 47-194 (227)
29 PLN02336 phosphoethanolamine N 99.6 1.4E-14 2.9E-19 141.4 18.9 158 30-247 265-422 (475)
30 PRK10258 biotin biosynthesis p 99.6 3.3E-15 7.1E-20 133.7 12.9 114 22-152 32-146 (251)
31 TIGR00477 tehB tellurite resis 99.6 5.5E-15 1.2E-19 127.5 13.5 103 31-145 30-132 (195)
32 TIGR02021 BchM-ChlM magnesium 99.6 5.1E-14 1.1E-18 123.5 18.4 102 31-144 55-156 (219)
33 PLN02490 MPBQ/MSBQ methyltrans 99.6 1.2E-14 2.7E-19 134.5 13.6 104 30-147 112-216 (340)
34 PRK14103 trans-aconitate 2-met 99.6 4.9E-15 1.1E-19 133.0 10.5 107 23-148 20-128 (255)
35 PRK00107 gidB 16S rRNA methylt 99.6 3.3E-14 7.1E-19 121.5 14.8 115 18-148 32-147 (187)
36 PRK01683 trans-aconitate 2-met 99.6 6.8E-15 1.5E-19 132.2 11.0 103 30-149 30-133 (258)
37 PF08242 Methyltransf_12: Meth 99.6 3.2E-16 7E-21 120.0 1.8 98 36-142 1-99 (99)
38 KOG1270 Methyltransferases [Co 99.6 5.9E-15 1.3E-19 128.8 9.7 120 18-151 68-200 (282)
39 PRK12335 tellurite resistance 99.6 1.7E-14 3.7E-19 131.7 13.2 104 31-146 120-223 (287)
40 TIGR03587 Pse_Me-ase pseudamin 99.6 2.7E-14 5.9E-19 123.9 13.7 100 29-145 41-141 (204)
41 TIGR00452 methyltransferase, p 99.6 2.4E-14 5.2E-19 131.5 12.6 106 31-147 121-226 (314)
42 smart00138 MeTrc Methyltransfe 99.6 3.1E-14 6.8E-19 128.3 13.1 126 12-145 79-241 (264)
43 KOG4300 Predicted methyltransf 99.6 3.6E-14 7.7E-19 119.6 12.0 102 33-145 78-181 (252)
44 PF03848 TehB: Tellurite resis 99.6 2.8E-14 6E-19 121.6 11.4 103 31-145 30-132 (192)
45 TIGR03438 probable methyltrans 99.6 4.5E-13 9.8E-18 123.1 20.3 113 29-145 61-176 (301)
46 PRK11088 rrmA 23S rRNA methylt 99.5 4.7E-14 1E-18 127.8 12.6 101 31-154 85-189 (272)
47 TIGR00138 gidB 16S rRNA methyl 99.5 1.9E-13 4.2E-18 116.4 15.3 101 31-147 42-143 (181)
48 TIGR02072 BioC biotin biosynth 99.5 6.3E-14 1.4E-18 123.7 12.7 107 31-152 34-141 (240)
49 PF05175 MTS: Methyltransferas 99.5 2.1E-13 4.4E-18 115.1 14.8 111 31-149 31-143 (170)
50 PRK00121 trmB tRNA (guanine-N( 99.5 5.6E-14 1.2E-18 121.8 11.6 122 28-154 37-164 (202)
51 PRK06202 hypothetical protein; 99.5 1.7E-13 3.7E-18 121.3 14.8 101 31-145 60-165 (232)
52 TIGR02469 CbiT precorrin-6Y C5 99.5 3.9E-13 8.4E-18 106.5 14.4 106 29-147 17-123 (124)
53 TIGR03840 TMPT_Se_Te thiopurin 99.5 2.1E-13 4.6E-18 119.0 13.9 108 30-145 33-151 (213)
54 PLN02585 magnesium protoporphy 99.5 1.2E-12 2.7E-17 120.4 19.4 105 31-148 144-252 (315)
55 PRK06922 hypothetical protein; 99.5 1.2E-13 2.6E-18 135.7 12.8 108 31-146 418-537 (677)
56 PRK11873 arsM arsenite S-adeno 99.5 1.1E-13 2.3E-18 125.5 11.5 105 30-145 76-182 (272)
57 PF05401 NodS: Nodulation prot 99.5 1.1E-13 2.4E-18 117.0 10.5 105 31-147 43-147 (201)
58 PRK07580 Mg-protoporphyrin IX 99.5 1.7E-12 3.7E-17 114.3 18.8 99 30-140 62-160 (230)
59 PRK05134 bifunctional 3-demeth 99.5 6.4E-13 1.4E-17 117.5 15.6 107 31-149 48-154 (233)
60 PRK00216 ubiE ubiquinone/menaq 99.5 2.9E-13 6.2E-18 119.6 12.8 105 31-145 51-157 (239)
61 TIGR00406 prmA ribosomal prote 99.5 5.8E-13 1.3E-17 121.7 14.7 111 24-149 152-262 (288)
62 PLN03075 nicotianamine synthas 99.5 5E-13 1.1E-17 120.9 13.7 108 31-147 123-234 (296)
63 PRK08317 hypothetical protein; 99.5 5.5E-13 1.2E-17 117.5 13.8 109 29-149 17-127 (241)
64 TIGR01983 UbiG ubiquinone bios 99.5 1.6E-12 3.5E-17 114.1 16.3 109 31-150 45-153 (224)
65 TIGR02716 C20_methyl_CrtF C-20 99.5 1E-12 2.2E-17 121.1 15.7 105 30-145 148-253 (306)
66 PF13659 Methyltransf_26: Meth 99.5 9.6E-14 2.1E-18 109.3 7.6 113 32-148 1-117 (117)
67 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 6.8E-13 1.5E-17 116.0 13.4 103 31-146 39-143 (223)
68 TIGR02081 metW methionine bios 99.5 8.5E-13 1.8E-17 113.6 13.5 159 26-240 8-168 (194)
69 PRK15001 SAM-dependent 23S rib 99.5 1.5E-12 3.3E-17 122.3 16.1 108 32-146 229-340 (378)
70 PRK13255 thiopurine S-methyltr 99.5 1.1E-12 2.4E-17 114.9 14.0 109 29-145 35-154 (218)
71 TIGR00537 hemK_rel_arch HemK-r 99.4 1.3E-12 2.8E-17 111.0 12.4 108 31-149 19-143 (179)
72 PRK13944 protein-L-isoaspartat 99.4 2.8E-12 6.1E-17 111.4 14.1 101 30-146 71-173 (205)
73 TIGR00091 tRNA (guanine-N(7)-) 99.4 8.3E-13 1.8E-17 113.8 10.6 118 30-152 15-138 (194)
74 COG4106 Tam Trans-aconitate me 99.4 2.8E-13 6E-18 115.1 6.4 102 31-149 30-132 (257)
75 PRK09489 rsmC 16S ribosomal RN 99.4 3.1E-12 6.7E-17 119.3 14.0 108 31-148 196-305 (342)
76 PRK08287 cobalt-precorrin-6Y C 99.4 7E-12 1.5E-16 107.3 15.2 102 30-147 30-132 (187)
77 PRK00517 prmA ribosomal protei 99.4 3.1E-12 6.6E-17 114.6 12.9 102 27-149 115-216 (250)
78 PLN02336 phosphoethanolamine N 99.4 2.2E-12 4.9E-17 125.8 12.8 105 31-145 37-141 (475)
79 PRK14967 putative methyltransf 99.4 6.6E-12 1.4E-16 110.5 14.1 112 29-149 34-162 (223)
80 PRK00377 cbiT cobalt-precorrin 99.4 1.1E-11 2.5E-16 107.0 14.9 120 21-152 29-151 (198)
81 PRK04266 fibrillarin; Provisio 99.4 7.7E-12 1.7E-16 110.1 13.1 108 29-148 70-178 (226)
82 PF06325 PrmA: Ribosomal prote 99.4 3.7E-12 8E-17 115.9 11.1 106 23-145 153-258 (295)
83 PF08003 Methyltransf_9: Prote 99.4 1.2E-11 2.6E-16 111.1 14.0 103 31-146 115-219 (315)
84 PLN02232 ubiquinone biosynthes 99.4 8.5E-13 1.8E-17 110.2 6.2 79 58-146 1-81 (160)
85 COG4123 Predicted O-methyltran 99.4 3.9E-12 8.5E-17 112.0 10.4 134 20-157 31-183 (248)
86 TIGR01177 conserved hypothetic 99.4 8.6E-12 1.9E-16 116.1 13.1 120 29-156 180-304 (329)
87 COG2264 PrmA Ribosomal protein 99.4 5.4E-12 1.2E-16 114.0 11.2 110 23-146 154-263 (300)
88 PRK13256 thiopurine S-methyltr 99.3 1.3E-11 2.8E-16 108.1 12.9 113 30-148 42-165 (226)
89 PRK11188 rrmJ 23S rRNA methylt 99.3 1.6E-11 3.4E-16 107.1 13.2 111 29-152 49-171 (209)
90 PRK14968 putative methyltransf 99.3 2.5E-11 5.3E-16 103.4 14.1 112 30-149 22-151 (188)
91 KOG2361 Predicted methyltransf 99.3 7.3E-12 1.6E-16 108.3 10.7 160 34-238 74-236 (264)
92 PRK13942 protein-L-isoaspartat 99.3 1.9E-11 4E-16 106.8 13.2 101 29-146 74-176 (212)
93 TIGR00080 pimt protein-L-isoas 99.3 1.9E-11 4.2E-16 107.0 13.3 102 29-147 75-178 (215)
94 TIGR03533 L3_gln_methyl protei 99.3 7.7E-11 1.7E-15 107.4 16.3 113 31-150 121-255 (284)
95 TIGR00438 rrmJ cell division p 99.3 2.4E-11 5.2E-16 104.1 12.2 117 29-157 30-160 (188)
96 TIGR03534 RF_mod_PrmC protein- 99.3 7.4E-11 1.6E-15 105.2 14.5 111 30-148 86-219 (251)
97 PRK14121 tRNA (guanine-N(7)-)- 99.3 4.4E-11 9.6E-16 112.2 13.1 117 31-153 122-242 (390)
98 PRK11805 N5-glutamine S-adenos 99.3 1.2E-10 2.6E-15 107.2 15.6 110 33-149 135-266 (307)
99 KOG3010 Methyltransferase [Gen 99.3 6.9E-12 1.5E-16 108.4 6.8 114 18-145 22-136 (261)
100 cd02440 AdoMet_MTases S-adenos 99.3 6.6E-11 1.4E-15 89.1 11.2 103 34-145 1-103 (107)
101 PRK00312 pcm protein-L-isoaspa 99.3 1.1E-10 2.3E-15 102.0 13.9 100 30-147 77-176 (212)
102 PRK07402 precorrin-6B methylas 99.3 1.3E-10 2.8E-15 100.2 14.1 110 30-153 39-149 (196)
103 COG2813 RsmC 16S RNA G1207 met 99.2 1.4E-10 3.1E-15 104.3 13.6 115 24-147 150-267 (300)
104 TIGR00536 hemK_fam HemK family 99.2 2E-10 4.3E-15 104.8 14.6 110 33-149 116-247 (284)
105 PF06080 DUF938: Protein of un 99.2 4.7E-10 1E-14 96.0 14.9 121 25-147 18-142 (204)
106 COG4976 Predicted methyltransf 99.2 1.1E-11 2.4E-16 106.2 4.7 141 32-240 126-266 (287)
107 KOG1541 Predicted protein carb 99.2 3.2E-10 6.9E-15 96.8 12.9 112 32-156 51-171 (270)
108 PRK04457 spermidine synthase; 99.2 2.7E-10 5.8E-15 102.7 13.1 116 30-151 65-182 (262)
109 PF05724 TPMT: Thiopurine S-me 99.2 1.2E-10 2.5E-15 102.0 9.7 110 28-145 34-154 (218)
110 PRK09328 N5-glutamine S-adenos 99.2 5.1E-10 1.1E-14 101.3 14.3 110 30-147 107-239 (275)
111 COG2242 CobL Precorrin-6B meth 99.2 1E-09 2.2E-14 92.2 14.6 123 19-156 21-145 (187)
112 PRK00811 spermidine synthase; 99.2 2.2E-10 4.8E-15 104.4 11.6 113 30-147 75-192 (283)
113 PF01739 CheR: CheR methyltran 99.2 4.9E-10 1.1E-14 96.4 12.8 130 8-145 7-174 (196)
114 PRK14966 unknown domain/N5-glu 99.2 7.1E-10 1.5E-14 104.8 14.9 112 30-148 250-383 (423)
115 PF05891 Methyltransf_PK: AdoM 99.2 6.2E-10 1.3E-14 95.8 12.8 106 31-145 55-160 (218)
116 TIGR03704 PrmC_rel_meth putati 99.2 7.4E-10 1.6E-14 99.2 13.9 110 32-149 87-219 (251)
117 PRK10901 16S rRNA methyltransf 99.1 9.9E-10 2.1E-14 105.8 15.1 111 30-147 243-373 (427)
118 PRK15128 23S rRNA m(5)C1962 me 99.1 5.6E-10 1.2E-14 106.1 12.8 114 31-148 220-341 (396)
119 TIGR00446 nop2p NOL1/NOP2/sun 99.1 6.4E-10 1.4E-14 100.4 12.3 113 30-149 70-202 (264)
120 PRK14904 16S rRNA methyltransf 99.1 9.5E-10 2.1E-14 106.5 14.2 110 31-149 250-380 (445)
121 PRK13943 protein-L-isoaspartat 99.1 8.1E-10 1.8E-14 102.1 13.0 101 29-146 78-180 (322)
122 PTZ00146 fibrillarin; Provisio 99.1 7.5E-10 1.6E-14 100.1 12.2 105 29-145 130-236 (293)
123 TIGR00563 rsmB ribosomal RNA s 99.1 1.1E-09 2.4E-14 105.4 13.7 115 31-149 238-371 (426)
124 PRK14903 16S rRNA methyltransf 99.1 1.3E-09 2.8E-14 104.9 13.9 114 30-149 236-369 (431)
125 PRK14901 16S rRNA methyltransf 99.1 1E-09 2.2E-14 106.0 13.1 116 30-148 251-386 (434)
126 PLN02781 Probable caffeoyl-CoA 99.1 9.3E-10 2E-14 97.5 11.9 106 31-145 68-177 (234)
127 PHA03411 putative methyltransf 99.1 6.6E-10 1.4E-14 99.4 10.3 102 31-145 64-182 (279)
128 PRK01544 bifunctional N5-gluta 99.1 8.8E-10 1.9E-14 108.0 11.9 109 32-147 139-270 (506)
129 smart00650 rADc Ribosomal RNA 99.1 1.9E-09 4.1E-14 90.7 12.3 107 30-151 12-118 (169)
130 PRK11783 rlmL 23S rRNA m(2)G24 99.1 1.4E-09 3.1E-14 110.6 13.8 118 25-148 533-658 (702)
131 PRK14902 16S rRNA methyltransf 99.0 2.7E-09 5.9E-14 103.3 13.8 113 30-148 249-381 (444)
132 PF01135 PCMT: Protein-L-isoas 99.0 1.4E-09 3.1E-14 94.5 10.0 102 29-147 70-173 (209)
133 PHA03412 putative methyltransf 99.0 2.7E-09 5.9E-14 93.5 10.8 98 31-141 49-158 (241)
134 PRK01581 speE spermidine synth 99.0 1.5E-08 3.2E-13 94.2 15.8 113 30-147 149-269 (374)
135 TIGR00417 speE spermidine synt 99.0 5.1E-09 1.1E-13 94.9 12.5 111 31-148 72-188 (270)
136 PRK10909 rsmD 16S rRNA m(2)G96 99.0 6.1E-09 1.3E-13 89.9 12.2 121 18-149 38-162 (199)
137 COG2890 HemK Methylase of poly 99.0 8.9E-09 1.9E-13 93.6 13.6 105 34-147 113-239 (280)
138 PLN02366 spermidine synthase 99.0 3.8E-09 8.3E-14 97.1 10.9 113 29-145 89-205 (308)
139 COG2518 Pcm Protein-L-isoaspar 99.0 4.9E-09 1.1E-13 89.9 10.8 110 20-147 60-170 (209)
140 COG2519 GCD14 tRNA(1-methylade 99.0 9.9E-09 2.1E-13 90.1 12.3 113 29-157 92-206 (256)
141 KOG2940 Predicted methyltransf 98.9 7.7E-10 1.7E-14 95.0 4.6 112 31-155 72-183 (325)
142 KOG1499 Protein arginine N-met 98.9 5.4E-09 1.2E-13 95.5 10.4 106 30-143 59-164 (346)
143 PRK10611 chemotaxis methyltran 98.9 1.2E-08 2.5E-13 92.7 11.8 107 32-145 116-261 (287)
144 PF00891 Methyltransf_2: O-met 98.9 8.6E-09 1.9E-13 91.7 10.8 96 31-145 100-198 (241)
145 PF02390 Methyltransf_4: Putat 98.9 1.3E-08 2.7E-13 87.8 11.5 117 31-153 17-140 (195)
146 PRK13168 rumA 23S rRNA m(5)U19 98.9 1.9E-08 4.2E-13 97.3 13.6 114 30-156 296-409 (443)
147 KOG2904 Predicted methyltransf 98.9 7.2E-08 1.6E-12 85.1 15.1 141 16-157 133-299 (328)
148 PF01596 Methyltransf_3: O-met 98.9 1.2E-08 2.6E-13 88.4 9.8 106 31-145 45-154 (205)
149 COG1352 CheR Methylase of chem 98.9 4.6E-08 1E-12 87.8 13.6 128 10-145 75-240 (268)
150 COG1092 Predicted SAM-dependen 98.9 3.3E-08 7.2E-13 93.1 13.1 123 24-149 211-339 (393)
151 PRK03612 spermidine synthase; 98.9 1.5E-08 3.3E-13 99.8 11.2 113 30-147 296-416 (521)
152 COG2263 Predicted RNA methylas 98.9 1.1E-08 2.4E-13 85.8 8.6 74 31-115 45-118 (198)
153 TIGR00095 RNA methyltransferas 98.8 5.5E-08 1.2E-12 83.4 12.8 113 31-148 49-161 (189)
154 TIGR03439 methyl_EasF probable 98.8 8.3E-08 1.8E-12 88.5 14.5 113 29-145 74-196 (319)
155 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.8 2.6E-08 5.5E-13 88.8 10.4 132 14-145 36-198 (256)
156 PRK03522 rumB 23S rRNA methylu 98.8 3.7E-08 8.1E-13 91.2 11.8 109 31-154 173-281 (315)
157 KOG2899 Predicted methyltransf 98.8 2E-08 4.4E-13 87.1 9.1 114 31-145 58-208 (288)
158 PLN02476 O-methyltransferase 98.8 4.6E-08 9.9E-13 88.3 11.8 106 31-145 118-227 (278)
159 PF12147 Methyltransf_20: Puta 98.8 1.7E-07 3.7E-12 83.8 14.8 112 31-146 135-249 (311)
160 PF08704 GCD14: tRNA methyltra 98.8 3.1E-08 6.6E-13 88.0 9.7 119 27-157 36-157 (247)
161 COG0220 Predicted S-adenosylme 98.8 6.5E-08 1.4E-12 84.9 11.2 116 33-154 50-172 (227)
162 PF10294 Methyltransf_16: Puta 98.8 1.1E-07 2.4E-12 80.3 11.8 113 30-149 44-159 (173)
163 PF05185 PRMT5: PRMT5 arginine 98.8 8.2E-08 1.8E-12 92.6 12.0 103 32-143 187-294 (448)
164 PLN02672 methionine S-methyltr 98.7 7E-08 1.5E-12 101.0 11.8 113 32-149 119-281 (1082)
165 PF05219 DREV: DREV methyltran 98.7 4.6E-08 1E-12 86.3 8.9 93 32-145 95-187 (265)
166 PF01170 UPF0020: Putative RNA 98.7 1.8E-07 3.9E-12 79.5 12.0 127 15-148 11-152 (179)
167 PF10672 Methyltrans_SAM: S-ad 98.7 1.6E-07 3.4E-12 85.3 11.8 121 25-149 118-241 (286)
168 PRK11727 23S rRNA mA1618 methy 98.7 1.1E-07 2.5E-12 87.6 10.6 85 31-117 114-201 (321)
169 PRK00274 ksgA 16S ribosomal RN 98.7 2.5E-07 5.3E-12 83.9 12.5 86 20-116 30-116 (272)
170 COG1041 Predicted DNA modifica 98.7 2E-07 4.3E-12 85.7 11.8 111 29-147 195-311 (347)
171 COG4122 Predicted O-methyltran 98.7 2E-07 4.3E-12 81.2 10.4 104 31-145 59-165 (219)
172 PF03602 Cons_hypoth95: Conser 98.6 1.6E-07 3.6E-12 80.0 9.4 113 31-149 42-156 (183)
173 PRK14896 ksgA 16S ribosomal RN 98.6 4.1E-07 8.8E-12 81.9 12.0 85 21-117 18-103 (258)
174 PTZ00338 dimethyladenosine tra 98.6 1.6E-07 3.4E-12 86.0 9.4 80 29-117 34-113 (294)
175 TIGR00755 ksgA dimethyladenosi 98.6 5.8E-07 1.3E-11 80.6 12.9 88 18-117 15-106 (253)
176 KOG1500 Protein arginine N-met 98.6 4E-07 8.8E-12 82.5 11.4 105 31-145 177-281 (517)
177 TIGR00479 rumA 23S rRNA (uraci 98.6 2.9E-07 6.3E-12 88.9 11.2 115 30-156 291-405 (431)
178 TIGR00478 tly hemolysin TlyA f 98.6 2.4E-07 5.2E-12 81.5 9.0 97 31-146 75-171 (228)
179 KOG3045 Predicted RNA methylas 98.6 3E-07 6.5E-12 80.6 9.2 87 30-147 179-265 (325)
180 PLN02589 caffeoyl-CoA O-methyl 98.6 6.6E-07 1.4E-11 79.7 11.5 106 31-145 79-189 (247)
181 TIGR02085 meth_trns_rumB 23S r 98.6 5.9E-07 1.3E-11 85.1 11.9 111 31-156 233-343 (374)
182 PRK04148 hypothetical protein; 98.6 7.7E-07 1.7E-11 71.5 10.2 95 31-148 16-111 (134)
183 KOG3420 Predicted RNA methylas 98.5 2E-07 4.4E-12 74.7 6.7 76 31-114 48-123 (185)
184 PRK04338 N(2),N(2)-dimethylgua 98.5 9.3E-07 2E-11 83.8 12.2 108 32-154 58-166 (382)
185 PF05148 Methyltransf_8: Hypot 98.5 4.8E-07 1E-11 77.5 8.0 91 30-149 71-161 (219)
186 PLN02823 spermine synthase 98.5 1.6E-06 3.5E-11 80.7 12.1 111 31-146 103-220 (336)
187 KOG3178 Hydroxyindole-O-methyl 98.5 1.2E-06 2.6E-11 80.4 10.9 97 32-145 178-274 (342)
188 PF02475 Met_10: Met-10+ like- 98.5 3.7E-07 8E-12 78.7 6.6 103 26-143 96-199 (200)
189 COG3963 Phospholipid N-methylt 98.4 3E-06 6.4E-11 69.8 11.2 107 31-146 48-156 (194)
190 KOG2352 Predicted spermine/spe 98.4 4E-06 8.6E-11 80.0 12.2 133 7-147 22-162 (482)
191 PRK01544 bifunctional N5-gluta 98.4 2.1E-06 4.5E-11 84.4 10.7 117 31-154 347-470 (506)
192 PRK11933 yebU rRNA (cytosine-C 98.4 4.6E-06 9.9E-11 81.0 12.6 114 30-149 112-245 (470)
193 PF02384 N6_Mtase: N-6 DNA Met 98.4 1.8E-06 3.9E-11 79.7 9.2 115 31-149 46-186 (311)
194 KOG1331 Predicted methyltransf 98.3 5.5E-07 1.2E-11 80.2 5.0 98 31-145 45-142 (293)
195 COG0500 SmtA SAM-dependent met 98.3 8.4E-06 1.8E-10 64.9 11.6 102 35-149 52-158 (257)
196 KOG1661 Protein-L-isoaspartate 98.3 2.5E-06 5.4E-11 72.7 8.1 103 27-145 78-192 (237)
197 KOG1269 SAM-dependent methyltr 98.3 1.2E-06 2.6E-11 82.1 6.1 117 19-145 95-214 (364)
198 PF01728 FtsJ: FtsJ-like methy 98.3 8.3E-07 1.8E-11 75.4 4.6 116 31-158 23-154 (181)
199 KOG1663 O-methyltransferase [S 98.3 1.2E-05 2.7E-10 69.6 11.5 107 31-145 73-182 (237)
200 PRK05031 tRNA (uracil-5-)-meth 98.3 6E-06 1.3E-10 77.9 10.5 111 32-156 207-329 (362)
201 PF07942 N2227: N2227-like pro 98.3 4.1E-05 8.8E-10 68.9 15.2 120 16-145 36-201 (270)
202 PF11968 DUF3321: Putative met 98.2 4.9E-06 1.1E-10 71.7 8.5 117 11-149 30-152 (219)
203 PRK11783 rlmL 23S rRNA m(2)G24 98.2 1.5E-05 3.2E-10 81.5 13.6 130 17-150 174-351 (702)
204 TIGR00308 TRM1 tRNA(guanine-26 98.2 5.8E-06 1.3E-10 78.1 9.6 106 33-152 46-153 (374)
205 TIGR02143 trmA_only tRNA (urac 98.2 1.3E-05 2.8E-10 75.4 11.5 112 32-156 198-320 (353)
206 TIGR02987 met_A_Alw26 type II 98.2 1.2E-05 2.5E-10 79.7 11.5 117 31-149 31-199 (524)
207 COG2521 Predicted archaeal met 98.2 1.6E-06 3.5E-11 75.0 4.5 109 31-146 134-245 (287)
208 PRK00050 16S rRNA m(4)C1402 me 98.2 8.1E-06 1.8E-10 74.5 9.2 80 30-114 18-99 (296)
209 COG0742 N6-adenine-specific me 98.2 5E-05 1.1E-09 64.3 12.8 113 31-149 43-157 (187)
210 PF01564 Spermine_synth: Sperm 98.2 6.7E-06 1.4E-10 73.4 7.8 113 29-146 74-191 (246)
211 PRK00536 speE spermidine synth 98.1 1.9E-05 4.2E-10 70.8 10.6 98 30-146 71-171 (262)
212 COG0421 SpeE Spermidine syntha 98.1 1.6E-05 3.6E-10 72.1 10.2 109 33-146 78-190 (282)
213 PF03141 Methyltransf_29: Puta 98.1 1.4E-06 3.1E-11 83.3 3.2 102 33-150 119-223 (506)
214 KOG0820 Ribosomal RNA adenine 98.1 1.4E-05 3.1E-10 70.8 9.0 77 29-114 56-132 (315)
215 KOG3191 Predicted N6-DNA-methy 98.1 3.9E-05 8.3E-10 64.2 10.3 110 32-150 44-172 (209)
216 PF09445 Methyltransf_15: RNA 98.1 8.3E-06 1.8E-10 67.9 6.3 76 34-113 2-77 (163)
217 COG2520 Predicted methyltransf 98.1 2.6E-05 5.7E-10 72.2 10.0 107 25-145 182-288 (341)
218 PF08123 DOT1: Histone methyla 98.1 6.2E-05 1.4E-09 65.2 11.5 109 29-145 40-157 (205)
219 COG0293 FtsJ 23S rRNA methylas 98.0 0.0001 2.2E-09 63.3 11.5 119 29-160 43-176 (205)
220 PF13679 Methyltransf_32: Meth 98.0 0.0001 2.2E-09 60.1 10.8 106 30-151 24-136 (141)
221 PF09243 Rsm22: Mitochondrial 98.0 6.4E-05 1.4E-09 68.2 10.5 119 31-160 33-156 (274)
222 COG0144 Sun tRNA and rRNA cyto 98.0 0.00017 3.7E-09 67.8 13.6 124 22-149 145-291 (355)
223 PF02527 GidB: rRNA small subu 97.9 0.00013 2.8E-09 62.2 11.1 114 20-149 36-152 (184)
224 COG0116 Predicted N6-adenine-s 97.9 0.00027 5.8E-09 66.2 13.6 119 29-153 189-351 (381)
225 KOG2915 tRNA(1-methyladenosine 97.8 0.00033 7.2E-09 62.2 11.8 113 28-153 102-217 (314)
226 COG2265 TrmA SAM-dependent met 97.8 0.00012 2.5E-09 70.5 9.7 114 31-157 293-406 (432)
227 KOG2798 Putative trehalase [Ca 97.8 0.00061 1.3E-08 61.7 13.0 109 32-145 151-295 (369)
228 COG0030 KsgA Dimethyladenosine 97.8 0.00016 3.5E-09 64.5 9.3 80 29-117 28-107 (259)
229 PF01269 Fibrillarin: Fibrilla 97.8 0.00056 1.2E-08 59.4 12.1 106 29-146 71-178 (229)
230 PF04672 Methyltransf_19: S-ad 97.7 0.00033 7.2E-09 62.7 10.6 111 33-147 70-191 (267)
231 COG3897 Predicted methyltransf 97.7 0.00015 3.2E-09 61.5 7.7 107 31-152 79-185 (218)
232 TIGR00006 S-adenosyl-methyltra 97.7 0.0015 3.3E-08 59.8 14.4 59 30-90 19-78 (305)
233 KOG2730 Methylase [General fun 97.6 5.2E-05 1.1E-09 65.3 4.0 101 32-139 95-195 (263)
234 PF00398 RrnaAD: Ribosomal RNA 97.6 0.0025 5.4E-08 57.4 14.7 91 18-115 16-107 (262)
235 PF05958 tRNA_U5-meth_tr: tRNA 97.6 0.00045 9.8E-09 65.0 10.1 113 33-157 198-320 (352)
236 PF03059 NAS: Nicotianamine sy 97.6 0.00083 1.8E-08 60.7 11.2 108 33-149 122-233 (276)
237 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.6 0.00055 1.2E-08 62.4 9.9 114 31-149 85-222 (283)
238 KOG3987 Uncharacterized conser 97.6 2.8E-05 6.1E-10 66.2 1.3 93 32-145 113-206 (288)
239 PF04816 DUF633: Family of unk 97.5 0.0009 2E-08 58.0 10.6 109 35-155 1-110 (205)
240 KOG4589 Cell division protein 97.5 0.00081 1.8E-08 56.6 9.7 109 29-149 67-187 (232)
241 PF05971 Methyltransf_10: Prot 97.5 0.00083 1.8E-08 61.3 10.0 99 18-117 87-189 (299)
242 COG1189 Predicted rRNA methyla 97.5 0.00078 1.7E-08 58.9 9.1 101 31-147 79-179 (245)
243 PRK11760 putative 23S rRNA C24 97.4 0.00097 2.1E-08 61.7 9.9 94 29-145 209-304 (357)
244 KOG2187 tRNA uracil-5-methyltr 97.4 0.0011 2.3E-08 64.0 9.8 60 30-91 382-441 (534)
245 KOG3201 Uncharacterized conser 97.4 0.00033 7.1E-09 57.6 5.4 121 31-159 29-153 (201)
246 PF13578 Methyltransf_24: Meth 97.4 0.00023 5.1E-09 54.7 4.3 100 36-145 1-104 (106)
247 COG1889 NOP1 Fibrillarin-like 97.3 0.012 2.7E-07 50.3 13.9 116 29-156 74-198 (231)
248 COG4076 Predicted RNA methylas 97.3 0.00046 1E-08 58.1 5.2 100 32-143 33-132 (252)
249 TIGR01444 fkbM_fam methyltrans 97.3 0.00091 2E-08 54.1 6.9 58 34-92 1-59 (143)
250 KOG1709 Guanidinoacetate methy 97.2 0.0024 5.3E-08 55.0 9.4 106 30-145 100-205 (271)
251 PF06962 rRNA_methylase: Putat 97.2 0.0025 5.4E-08 51.6 8.3 87 56-146 1-92 (140)
252 COG0275 Predicted S-adenosylme 97.1 0.013 2.7E-07 53.3 12.7 48 30-77 22-71 (314)
253 PF04989 CmcI: Cephalosporin h 97.1 0.0021 4.6E-08 55.4 7.3 115 22-145 25-146 (206)
254 COG0357 GidB Predicted S-adeno 97.1 0.0076 1.6E-07 52.5 10.8 98 32-145 68-167 (215)
255 PF07091 FmrO: Ribosomal RNA m 97.0 0.0047 1E-07 54.7 9.5 106 31-149 105-211 (251)
256 COG4262 Predicted spermidine s 97.0 0.0088 1.9E-07 55.5 11.0 112 31-148 289-409 (508)
257 PF01795 Methyltransf_5: MraW 97.0 0.0074 1.6E-07 55.4 10.3 60 29-90 18-78 (310)
258 PF11599 AviRa: RRNA methyltra 96.9 0.0095 2.1E-07 51.4 9.9 113 31-145 51-212 (246)
259 COG0286 HsdM Type I restrictio 96.8 0.0096 2.1E-07 58.5 10.7 118 31-149 186-329 (489)
260 COG4627 Uncharacterized protei 96.8 0.00063 1.4E-08 55.5 1.5 57 102-160 44-100 (185)
261 PF03492 Methyltransf_7: SAM d 96.7 0.05 1.1E-06 50.8 14.3 46 102-147 104-184 (334)
262 PF02005 TRM: N2,N2-dimethylgu 96.7 0.0052 1.1E-07 58.2 7.6 109 31-152 49-160 (377)
263 COG2384 Predicted SAM-dependen 96.6 0.049 1.1E-06 47.3 12.1 113 25-150 10-123 (226)
264 KOG2198 tRNA cytosine-5-methyl 96.5 0.039 8.5E-07 51.4 11.2 123 29-152 153-302 (375)
265 KOG1122 tRNA and rRNA cytosine 96.4 0.028 6.2E-07 53.1 10.0 113 31-148 241-373 (460)
266 KOG4058 Uncharacterized conser 96.3 0.039 8.4E-07 44.9 8.9 104 31-149 72-176 (199)
267 KOG3115 Methyltransferase-like 96.2 0.013 2.9E-07 50.1 6.1 112 32-146 61-183 (249)
268 PRK11524 putative methyltransf 95.9 0.026 5.7E-07 51.5 7.4 56 20-76 197-252 (284)
269 cd00315 Cyt_C5_DNA_methylase C 95.8 0.022 4.7E-07 51.8 6.3 72 34-116 2-73 (275)
270 PF01555 N6_N4_Mtase: DNA meth 95.6 0.034 7.3E-07 48.1 6.7 53 19-72 179-231 (231)
271 PF06859 Bin3: Bicoid-interact 95.6 0.0078 1.7E-07 46.4 2.2 40 105-145 1-43 (110)
272 PRK13699 putative methylase; P 95.6 0.049 1.1E-06 48.0 7.4 57 20-77 152-208 (227)
273 KOG1253 tRNA methyltransferase 95.5 0.0052 1.1E-07 59.0 1.1 112 31-152 109-222 (525)
274 COG5459 Predicted rRNA methyla 95.5 0.058 1.2E-06 50.0 7.6 123 32-160 114-242 (484)
275 PRK10742 putative methyltransf 95.5 0.058 1.3E-06 48.0 7.4 80 30-115 85-174 (250)
276 COG1064 AdhP Zn-dependent alco 95.5 0.12 2.7E-06 48.0 9.9 96 27-145 162-258 (339)
277 PLN02668 indole-3-acetate carb 95.5 0.13 2.8E-06 48.8 10.2 47 102-148 159-239 (386)
278 COG1867 TRM1 N2,N2-dimethylgua 95.5 0.053 1.2E-06 50.6 7.4 123 14-150 34-158 (380)
279 KOG1596 Fibrillarin and relate 95.4 0.1 2.2E-06 46.0 8.4 108 26-145 151-260 (317)
280 PF01861 DUF43: Protein of unk 95.3 1.5 3.3E-05 38.8 15.5 118 31-159 44-165 (243)
281 COG3129 Predicted SAM-dependen 95.2 0.063 1.4E-06 47.0 6.5 93 31-128 78-173 (292)
282 PF07757 AdoMet_MTase: Predict 95.2 0.024 5.2E-07 43.6 3.5 32 31-63 58-89 (112)
283 KOG1562 Spermidine synthase [A 95.1 0.18 4E-06 45.7 9.4 123 31-158 121-247 (337)
284 PF11312 DUF3115: Protein of u 95.0 0.083 1.8E-06 48.3 7.2 117 33-149 88-246 (315)
285 TIGR00027 mthyl_TIGR00027 meth 94.9 0.93 2E-05 40.8 13.7 113 32-149 82-200 (260)
286 PHA01634 hypothetical protein 94.9 0.19 4.1E-06 40.0 7.8 47 31-77 28-74 (156)
287 COG4301 Uncharacterized conser 94.8 0.45 9.8E-06 42.2 10.8 110 31-145 78-192 (321)
288 KOG2671 Putative RNA methylase 94.6 0.098 2.1E-06 48.4 6.5 115 29-149 206-357 (421)
289 PF03514 GRAS: GRAS domain fam 94.6 0.9 2E-05 43.2 13.3 128 31-160 110-261 (374)
290 COG4798 Predicted methyltransf 94.4 0.2 4.4E-06 42.8 7.5 110 29-145 46-165 (238)
291 PF03269 DUF268: Caenorhabditi 94.2 0.068 1.5E-06 44.2 4.2 104 32-149 2-114 (177)
292 PF03141 Methyltransf_29: Puta 94.2 0.05 1.1E-06 52.7 3.8 110 33-159 367-478 (506)
293 KOG2793 Putative N2,N2-dimethy 94.1 0.29 6.3E-06 43.6 8.4 112 32-149 87-202 (248)
294 KOG1227 Putative methyltransfe 94.1 0.066 1.4E-06 48.5 4.3 96 31-141 194-290 (351)
295 KOG1099 SAM-dependent methyltr 94.1 0.16 3.4E-06 44.5 6.4 116 32-160 42-180 (294)
296 KOG0822 Protein kinase inhibit 94.0 0.2 4.4E-06 48.8 7.6 119 18-145 350-477 (649)
297 KOG1098 Putative SAM-dependent 93.4 0.088 1.9E-06 52.1 4.1 106 28-145 41-157 (780)
298 COG3510 CmcI Cephalosporin hyd 93.0 1.1 2.3E-05 38.4 9.3 105 31-145 69-179 (237)
299 KOG1501 Arginine N-methyltrans 92.8 0.21 4.5E-06 47.7 5.4 57 33-89 68-124 (636)
300 KOG2539 Mitochondrial/chloropl 92.8 0.24 5.2E-06 47.6 5.9 109 32-145 201-314 (491)
301 PF00145 DNA_methylase: C-5 cy 92.7 0.2 4.3E-06 46.0 5.3 103 34-148 2-113 (335)
302 cd08283 FDH_like_1 Glutathione 92.6 0.55 1.2E-05 44.5 8.3 108 30-146 183-306 (386)
303 PF04445 SAM_MT: Putative SAM- 92.3 0.55 1.2E-05 41.5 7.1 75 33-113 77-159 (234)
304 cd08254 hydroxyacyl_CoA_DH 6-h 92.0 1.3 2.8E-05 40.5 9.8 99 29-146 163-263 (338)
305 PRK09424 pntA NAD(P) transhydr 91.6 0.91 2E-05 44.9 8.6 105 31-147 164-286 (509)
306 PF02254 TrkA_N: TrkA-N domain 91.2 1.7 3.6E-05 33.4 8.2 82 53-151 20-101 (116)
307 PF04072 LCM: Leucine carboxyl 91.0 1.4 3.1E-05 37.2 8.3 98 31-133 77-183 (183)
308 KOG2920 Predicted methyltransf 91.0 0.37 8E-06 43.5 4.7 54 15-68 100-153 (282)
309 TIGR00497 hsdM type I restrict 90.9 2.2 4.8E-05 42.2 10.6 115 31-149 217-358 (501)
310 PF12692 Methyltransf_17: S-ad 90.6 0.53 1.1E-05 38.4 4.8 107 29-145 26-133 (160)
311 PF10354 DUF2431: Domain of un 90.6 6.6 0.00014 32.8 11.7 61 86-148 58-127 (166)
312 PF02636 Methyltransf_28: Puta 90.4 0.43 9.3E-06 42.6 4.7 60 17-76 3-72 (252)
313 KOG0024 Sorbitol dehydrogenase 90.1 1.5 3.3E-05 40.5 7.8 99 30-146 168-273 (354)
314 COG3315 O-Methyltransferase in 89.8 8.2 0.00018 35.4 12.6 116 32-152 93-215 (297)
315 TIGR00675 dcm DNA-methyltransf 89.6 0.57 1.2E-05 43.4 4.9 69 35-115 1-69 (315)
316 COG0270 Dcm Site-specific DNA 88.7 1.1 2.4E-05 41.7 6.2 76 32-116 3-78 (328)
317 PTZ00357 methyltransferase; Pr 88.7 1.5 3.3E-05 44.4 7.3 107 33-141 702-830 (1072)
318 PRK09880 L-idonate 5-dehydroge 88.2 1.5 3.3E-05 40.7 6.9 95 31-145 169-265 (343)
319 COG1063 Tdh Threonine dehydrog 87.6 5.5 0.00012 37.3 10.3 98 31-145 168-268 (350)
320 KOG2651 rRNA adenine N-6-methy 86.6 1.7 3.7E-05 40.9 6.0 42 31-72 153-194 (476)
321 cd05188 MDR Medium chain reduc 86.5 5.6 0.00012 34.7 9.3 98 30-146 133-232 (271)
322 PRK10458 DNA cytosine methylas 86.2 2.3 5.1E-05 41.5 7.0 81 32-115 88-179 (467)
323 COG1565 Uncharacterized conser 86.1 3.6 7.7E-05 38.7 7.8 60 18-77 64-132 (370)
324 PRK11524 putative methyltransf 85.2 1.1 2.4E-05 40.7 4.1 61 83-147 9-81 (284)
325 KOG1201 Hydroxysteroid 17-beta 84.9 7.1 0.00015 35.7 8.9 81 31-115 37-124 (300)
326 TIGR02356 adenyl_thiF thiazole 84.5 17 0.00037 31.2 11.0 79 31-113 20-119 (202)
327 PF00107 ADH_zinc_N: Zinc-bind 83.8 2.6 5.6E-05 32.9 5.2 84 43-145 3-88 (130)
328 cd08237 ribitol-5-phosphate_DH 83.6 6.1 0.00013 36.7 8.4 92 29-145 161-255 (341)
329 KOG3924 Putative protein methy 83.2 9.8 0.00021 36.1 9.3 118 20-145 181-307 (419)
330 KOG2352 Predicted spermine/spe 83.2 4.9 0.00011 39.1 7.6 117 31-149 295-421 (482)
331 PRK03659 glutathione-regulated 83.1 12 0.00026 37.9 10.8 103 33-152 401-504 (601)
332 COG1255 Uncharacterized protei 81.9 13 0.00029 29.0 8.1 88 32-145 14-101 (129)
333 PRK13699 putative methylase; P 81.3 1.7 3.7E-05 38.3 3.5 59 84-146 3-72 (227)
334 PRK05786 fabG 3-ketoacyl-(acyl 80.9 34 0.00074 29.3 11.7 113 31-146 4-135 (238)
335 cd01487 E1_ThiF_like E1_ThiF_l 80.7 21 0.00045 29.9 9.8 31 34-64 1-33 (174)
336 PLN03154 putative allyl alcoho 80.6 16 0.00035 34.0 10.1 99 29-145 156-257 (348)
337 cd08230 glucose_DH Glucose deh 80.2 13 0.00028 34.5 9.4 94 30-145 171-268 (355)
338 cd08232 idonate-5-DH L-idonate 80.1 5.3 0.00012 36.7 6.6 96 31-146 165-262 (339)
339 TIGR02822 adh_fam_2 zinc-bindi 79.7 15 0.00032 33.9 9.5 90 29-145 163-253 (329)
340 PRK01747 mnmC bifunctional tRN 79.6 6.5 0.00014 40.2 7.6 119 31-157 57-216 (662)
341 PRK10669 putative cation:proto 79.6 15 0.00033 36.7 10.1 101 33-150 418-519 (558)
342 cd08234 threonine_DH_like L-th 78.5 14 0.00031 33.6 9.0 97 30-145 158-256 (334)
343 PRK03562 glutathione-regulated 78.4 15 0.00034 37.3 9.8 104 32-152 400-504 (621)
344 COG0863 DNA modification methy 78.3 8.2 0.00018 34.9 7.2 54 23-77 214-267 (302)
345 cd08281 liver_ADH_like1 Zinc-d 78.2 14 0.00031 34.6 9.0 98 29-145 189-289 (371)
346 PRK08644 thiamine biosynthesis 77.9 40 0.00086 29.2 11.0 78 31-112 27-124 (212)
347 TIGR00561 pntA NAD(P) transhyd 77.5 6.3 0.00014 39.0 6.4 103 31-145 163-283 (511)
348 KOG0023 Alcohol dehydrogenase, 77.1 19 0.00042 33.4 8.9 100 29-148 179-282 (360)
349 PF10237 N6-adenineMlase: Prob 77.0 37 0.0008 28.2 10.0 100 30-149 24-126 (162)
350 TIGR03451 mycoS_dep_FDH mycoth 76.7 16 0.00034 34.0 8.8 98 29-145 174-275 (358)
351 PF05206 TRM13: Methyltransfer 76.5 18 0.00038 32.6 8.6 117 30-149 17-143 (259)
352 PF06016 Reovirus_L2: Reovirus 76.4 5 0.00011 43.4 5.7 98 31-141 822-920 (1289)
353 cd08245 CAD Cinnamyl alcohol d 76.4 30 0.00065 31.4 10.5 96 29-146 160-256 (330)
354 KOG2078 tRNA modification enzy 76.3 2.7 5.8E-05 40.3 3.3 62 28-90 246-308 (495)
355 TIGR02354 thiF_fam2 thiamine b 75.8 45 0.00098 28.6 10.7 98 31-138 20-137 (200)
356 PRK08267 short chain dehydroge 75.7 39 0.00085 29.5 10.7 79 33-115 2-87 (260)
357 PF03686 UPF0146: Uncharacteri 75.3 6.7 0.00015 31.2 4.9 93 31-149 13-105 (127)
358 cd00401 AdoHcyase S-adenosyl-L 75.2 9.9 0.00021 36.6 7.0 86 31-145 201-288 (413)
359 PRK09242 tropinone reductase; 75.1 56 0.0012 28.5 11.9 84 31-114 8-97 (257)
360 PRK06035 3-hydroxyacyl-CoA deh 75.0 16 0.00034 33.2 8.1 95 33-143 4-118 (291)
361 PF02737 3HCDH_N: 3-hydroxyacy 74.6 29 0.00063 29.2 9.0 97 34-146 1-114 (180)
362 KOG0821 Predicted ribosomal RN 74.4 12 0.00027 32.8 6.6 66 31-98 50-115 (326)
363 PRK07502 cyclohexadienyl dehyd 74.3 20 0.00044 32.7 8.7 90 33-145 7-99 (307)
364 KOG2912 Predicted DNA methylas 74.3 8.4 0.00018 35.6 5.8 77 36-114 107-187 (419)
365 cd08293 PTGR2 Prostaglandin re 74.0 24 0.00053 32.3 9.2 94 33-145 156-253 (345)
366 PRK08324 short chain dehydroge 73.0 23 0.00049 36.5 9.5 112 31-145 421-556 (681)
367 cd08295 double_bond_reductase_ 72.9 32 0.00069 31.6 9.7 99 29-145 149-250 (338)
368 TIGR02825 B4_12hDH leukotriene 72.7 35 0.00077 31.0 9.9 98 29-145 136-236 (325)
369 cd05278 FDH_like Formaldehyde 72.4 30 0.00065 31.7 9.4 97 30-145 166-266 (347)
370 PF11899 DUF3419: Protein of u 72.3 7 0.00015 37.2 5.1 58 81-145 275-333 (380)
371 TIGR03201 dearomat_had 6-hydro 71.5 20 0.00043 33.3 8.0 44 29-72 164-208 (349)
372 cd08239 THR_DH_like L-threonin 71.4 42 0.00091 30.7 10.2 96 30-145 162-261 (339)
373 PLN02740 Alcohol dehydrogenase 71.1 30 0.00065 32.6 9.2 100 29-145 196-299 (381)
374 TIGR03366 HpnZ_proposed putati 71.0 23 0.00051 31.6 8.2 94 31-145 120-217 (280)
375 PF05711 TylF: Macrocin-O-meth 70.8 12 0.00027 33.4 6.1 107 32-149 75-215 (248)
376 TIGR01202 bchC 2-desacetyl-2-h 70.2 18 0.00039 33.0 7.3 85 31-145 144-230 (308)
377 PRK07417 arogenate dehydrogena 70.0 42 0.00092 30.2 9.6 86 34-143 2-88 (279)
378 COG0287 TyrA Prephenate dehydr 69.9 32 0.00068 31.3 8.6 103 33-158 4-110 (279)
379 cd00757 ThiF_MoeB_HesA_family 69.8 42 0.0009 29.3 9.2 78 32-113 21-119 (228)
380 COG0569 TrkA K+ transport syst 69.6 18 0.00039 31.7 6.9 71 34-113 2-74 (225)
381 PF11899 DUF3419: Protein of u 69.5 14 0.0003 35.3 6.4 46 29-75 33-78 (380)
382 PRK09496 trkA potassium transp 69.3 39 0.00085 32.5 9.8 75 31-113 230-305 (453)
383 PF07279 DUF1442: Protein of u 68.7 78 0.0017 27.6 10.3 76 33-113 43-123 (218)
384 PRK08265 short chain dehydroge 67.4 65 0.0014 28.3 10.2 78 32-114 6-89 (261)
385 PRK07231 fabG 3-ketoacyl-(acyl 67.2 81 0.0018 27.1 11.0 80 32-114 5-90 (251)
386 PRK08762 molybdopterin biosynt 67.1 89 0.0019 29.6 11.5 79 31-113 134-233 (376)
387 cd08255 2-desacetyl-2-hydroxye 67.0 27 0.00059 30.8 7.7 92 30-145 96-189 (277)
388 PRK12939 short chain dehydroge 66.9 64 0.0014 27.7 9.9 82 31-114 6-93 (250)
389 PF06460 NSP13: Coronavirus NS 66.8 60 0.0013 29.3 9.3 114 15-149 38-172 (299)
390 cd08294 leukotriene_B4_DH_like 66.4 46 0.00099 30.1 9.2 97 29-145 141-240 (329)
391 PRK07688 thiamine/molybdopteri 65.9 67 0.0015 30.0 10.2 79 31-113 23-124 (339)
392 COG1568 Predicted methyltransf 65.8 46 0.00099 30.4 8.5 105 32-149 153-263 (354)
393 PRK05854 short chain dehydroge 65.7 51 0.0011 30.1 9.4 84 31-115 13-103 (313)
394 cd08261 Zn_ADH7 Alcohol dehydr 65.6 42 0.0009 30.7 8.8 98 29-145 157-257 (337)
395 PF02153 PDH: Prephenate dehyd 65.4 37 0.0008 30.3 8.1 81 54-158 11-91 (258)
396 PRK09496 trkA potassium transp 65.4 52 0.0011 31.7 9.8 97 34-146 2-99 (453)
397 PRK07063 short chain dehydroge 65.2 60 0.0013 28.3 9.5 84 31-114 6-95 (260)
398 PRK05875 short chain dehydroge 65.2 97 0.0021 27.2 11.5 84 31-114 6-95 (276)
399 PRK05597 molybdopterin biosynt 65.0 69 0.0015 30.2 10.2 79 31-113 27-126 (355)
400 cd00650 LDH_MDH_like NAD-depen 64.5 54 0.0012 29.2 9.1 93 55-156 27-129 (263)
401 PRK07819 3-hydroxybutyryl-CoA 64.5 7.8 0.00017 35.3 3.6 97 33-145 6-120 (286)
402 cd01488 Uba3_RUB Ubiquitin act 64.4 45 0.00097 30.6 8.5 74 34-112 1-95 (291)
403 PRK06701 short chain dehydroge 64.3 1.1E+02 0.0023 27.6 11.1 112 32-145 46-180 (290)
404 COG1748 LYS9 Saccharopine dehy 64.3 40 0.00087 32.2 8.4 73 33-114 2-77 (389)
405 PRK07576 short chain dehydroge 64.3 84 0.0018 27.6 10.3 81 31-113 8-94 (264)
406 PRK00050 16S rRNA m(4)C1402 me 63.8 14 0.00031 33.8 5.2 36 122-157 212-249 (296)
407 PRK12475 thiamine/molybdopteri 63.7 74 0.0016 29.7 10.1 79 31-113 23-124 (338)
408 COG0604 Qor NADPH:quinone redu 63.5 70 0.0015 29.6 9.9 98 29-146 140-241 (326)
409 PRK08223 hypothetical protein; 63.4 31 0.00067 31.5 7.2 77 31-111 26-123 (287)
410 PRK05708 2-dehydropantoate 2-r 63.2 50 0.0011 30.2 8.7 98 33-145 3-103 (305)
411 PF05050 Methyltransf_21: Meth 63.1 13 0.00029 29.9 4.5 37 37-73 1-42 (167)
412 PF01210 NAD_Gly3P_dh_N: NAD-d 62.7 20 0.00044 29.3 5.5 95 34-145 1-102 (157)
413 PLN02586 probable cinnamyl alc 62.2 40 0.00086 31.5 8.1 95 30-145 182-277 (360)
414 PLN02827 Alcohol dehydrogenase 61.9 55 0.0012 30.8 9.0 98 29-145 191-294 (378)
415 PRK07062 short chain dehydroge 61.8 70 0.0015 28.0 9.3 85 31-115 7-97 (265)
416 PRK05690 molybdopterin biosynt 61.4 80 0.0017 28.0 9.5 79 31-113 31-130 (245)
417 PLN02545 3-hydroxybutyryl-CoA 61.3 37 0.00079 30.8 7.5 96 33-143 5-116 (295)
418 PRK07530 3-hydroxybutyryl-CoA 60.5 89 0.0019 28.2 9.9 95 33-143 5-116 (292)
419 PRK09260 3-hydroxybutyryl-CoA 60.4 45 0.00097 30.1 7.9 97 34-145 3-116 (288)
420 PRK08217 fabG 3-ketoacyl-(acyl 60.1 41 0.00088 29.0 7.4 82 31-114 4-91 (253)
421 PRK07533 enoyl-(acyl carrier p 60.0 1.2E+02 0.0026 26.6 11.5 111 31-145 9-147 (258)
422 PF00106 adh_short: short chai 59.1 38 0.00083 27.1 6.6 80 34-115 2-90 (167)
423 PRK10309 galactitol-1-phosphat 59.1 68 0.0015 29.5 9.1 97 30-145 159-259 (347)
424 PRK07904 short chain dehydroge 59.1 65 0.0014 28.2 8.6 83 31-115 7-97 (253)
425 cd08236 sugar_DH NAD(P)-depend 58.6 69 0.0015 29.2 9.0 99 29-146 157-258 (343)
426 PRK08655 prephenate dehydrogen 58.1 71 0.0015 31.0 9.2 100 34-157 2-103 (437)
427 cd01489 Uba2_SUMO Ubiquitin ac 58.1 1E+02 0.0022 28.6 9.8 77 34-113 1-98 (312)
428 cd01483 E1_enzyme_family Super 57.9 93 0.002 24.6 9.1 30 34-63 1-32 (143)
429 PRK06125 short chain dehydroge 57.9 61 0.0013 28.3 8.2 83 31-114 6-90 (259)
430 PRK08293 3-hydroxybutyryl-CoA 57.8 75 0.0016 28.7 8.9 95 33-142 4-116 (287)
431 PF03446 NAD_binding_2: NAD bi 57.7 59 0.0013 26.6 7.5 98 34-156 3-104 (163)
432 PRK07411 hypothetical protein; 57.5 79 0.0017 30.2 9.3 79 31-113 37-136 (390)
433 TIGR02441 fa_ox_alpha_mit fatt 57.4 11 0.00025 39.1 3.8 104 33-145 336-449 (737)
434 PRK06128 oxidoreductase; Provi 57.3 1.1E+02 0.0024 27.5 9.9 111 32-145 55-190 (300)
435 cd08285 NADP_ADH NADP(H)-depen 57.2 65 0.0014 29.6 8.6 98 29-145 164-265 (351)
436 PRK14852 hypothetical protein; 56.8 93 0.002 33.5 10.2 78 31-112 331-429 (989)
437 cd01484 E1-2_like Ubiquitin ac 56.5 1E+02 0.0022 27.3 9.1 77 34-113 1-99 (234)
438 PRK07889 enoyl-(acyl carrier p 56.4 1.2E+02 0.0027 26.5 9.9 109 32-145 7-144 (256)
439 PRK12480 D-lactate dehydrogena 56.2 75 0.0016 29.6 8.7 100 31-157 145-249 (330)
440 cd08238 sorbose_phosphate_red 56.0 92 0.002 29.6 9.6 107 29-145 173-287 (410)
441 TIGR00936 ahcY adenosylhomocys 55.9 40 0.00087 32.4 6.9 87 30-145 193-281 (406)
442 PRK10083 putative oxidoreducta 55.8 94 0.002 28.3 9.4 98 29-145 158-258 (339)
443 TIGR02818 adh_III_F_hyde S-(hy 55.8 85 0.0018 29.3 9.2 98 29-145 183-286 (368)
444 PRK06940 short chain dehydroge 55.6 74 0.0016 28.3 8.4 79 34-115 4-86 (275)
445 PRK08340 glucose-1-dehydrogena 55.1 77 0.0017 27.7 8.4 77 34-114 2-85 (259)
446 cd08278 benzyl_alcohol_DH Benz 54.2 1.2E+02 0.0025 28.3 9.8 97 30-145 185-284 (365)
447 cd08300 alcohol_DH_class_III c 54.1 94 0.002 28.9 9.2 98 29-145 184-287 (368)
448 PRK09422 ethanol-active dehydr 54.1 1.1E+02 0.0024 27.8 9.5 98 29-145 160-260 (338)
449 cd00755 YgdL_like Family of ac 54.0 1.4E+02 0.0031 26.2 9.7 78 32-112 11-109 (231)
450 PRK08594 enoyl-(acyl carrier p 53.6 1.6E+02 0.0034 25.9 11.3 80 31-114 6-96 (257)
451 PRK08306 dipicolinate synthase 53.2 44 0.00096 30.5 6.6 89 31-145 151-240 (296)
452 PRK07109 short chain dehydroge 53.2 1.6E+02 0.0035 27.1 10.5 81 32-114 8-94 (334)
453 TIGR02355 moeB molybdopterin s 53.0 1.3E+02 0.0027 26.6 9.3 36 31-66 23-60 (240)
454 PRK06522 2-dehydropantoate 2-r 52.7 80 0.0017 28.4 8.2 96 34-145 2-99 (304)
455 PRK11730 fadB multifunctional 52.6 17 0.00036 37.7 4.1 96 33-144 314-426 (715)
456 PRK05600 thiamine biosynthesis 52.6 1.4E+02 0.003 28.4 9.9 79 31-113 40-139 (370)
457 PRK07877 hypothetical protein; 52.5 69 0.0015 33.3 8.4 79 31-113 106-204 (722)
458 PRK09186 flagellin modificatio 52.5 90 0.002 27.0 8.3 82 32-113 4-91 (256)
459 PRK08251 short chain dehydroge 52.0 1.3E+02 0.0028 25.8 9.3 81 32-114 2-90 (248)
460 PRK06197 short chain dehydroge 51.9 85 0.0018 28.3 8.3 84 31-115 15-105 (306)
461 PRK09072 short chain dehydroge 51.6 1.6E+02 0.0035 25.6 10.9 80 31-114 4-89 (263)
462 PRK11154 fadJ multifunctional 51.6 15 0.00034 37.9 3.6 97 33-145 310-424 (708)
463 PRK12829 short chain dehydroge 51.5 71 0.0015 27.7 7.5 80 31-114 10-95 (264)
464 PRK05867 short chain dehydroge 51.2 1.1E+02 0.0024 26.5 8.7 83 31-115 8-96 (253)
465 PRK07806 short chain dehydroge 50.9 1.6E+02 0.0035 25.2 11.4 112 32-145 6-133 (248)
466 PRK05808 3-hydroxybutyryl-CoA 50.8 1.1E+02 0.0025 27.3 8.8 93 34-143 5-115 (282)
467 cd01491 Ube1_repeat1 Ubiquitin 50.7 95 0.0021 28.4 8.2 75 31-113 18-113 (286)
468 TIGR02437 FadB fatty oxidation 50.7 15 0.00034 38.0 3.5 106 33-145 314-427 (714)
469 PRK05872 short chain dehydroge 50.5 1.9E+02 0.0041 26.0 11.8 82 31-115 8-95 (296)
470 PRK05476 S-adenosyl-L-homocyst 50.3 48 0.001 32.1 6.5 86 31-145 211-298 (425)
471 PRK06484 short chain dehydroge 49.6 2E+02 0.0044 28.1 11.1 108 32-145 269-399 (520)
472 PRK08507 prephenate dehydrogen 49.3 1.4E+02 0.003 26.7 9.1 97 34-156 2-101 (275)
473 PLN02514 cinnamyl-alcohol dehy 49.1 1.1E+02 0.0024 28.4 8.8 95 30-145 179-274 (357)
474 cd08240 6_hydroxyhexanoate_dh_ 49.1 1.4E+02 0.003 27.4 9.4 96 31-145 175-273 (350)
475 cd05285 sorbitol_DH Sorbitol d 49.1 1.1E+02 0.0023 28.1 8.6 99 29-146 160-265 (343)
476 PRK07890 short chain dehydroge 48.9 1.3E+02 0.0028 26.0 8.7 82 31-114 4-91 (258)
477 cd08243 quinone_oxidoreductase 48.6 1.6E+02 0.0035 26.1 9.6 96 29-145 140-237 (320)
478 PF02086 MethyltransfD12: D12 48.6 28 0.00062 30.6 4.5 58 15-76 7-64 (260)
479 PRK06194 hypothetical protein; 48.6 1E+02 0.0022 27.3 8.1 82 32-115 6-93 (287)
480 PRK07831 short chain dehydroge 48.2 1.1E+02 0.0023 26.7 8.2 85 31-115 16-107 (262)
481 PF08351 DUF1726: Domain of un 48.0 23 0.0005 26.4 3.2 42 104-152 10-51 (92)
482 PRK06124 gluconate 5-dehydroge 47.7 1.6E+02 0.0034 25.5 9.1 82 31-114 10-97 (256)
483 KOG1209 1-Acyl dihydroxyaceton 47.5 1E+02 0.0022 27.2 7.3 77 31-114 6-90 (289)
484 cd08242 MDR_like Medium chain 47.4 1.2E+02 0.0026 27.3 8.5 90 29-144 153-243 (319)
485 cd08296 CAD_like Cinnamyl alco 47.3 1.5E+02 0.0033 26.9 9.3 98 29-146 161-259 (333)
486 KOG1197 Predicted quinone oxid 47.0 2.3E+02 0.0049 25.8 9.6 103 22-144 135-243 (336)
487 TIGR02819 fdhA_non_GSH formald 46.8 1.6E+02 0.0035 27.9 9.6 108 29-145 183-298 (393)
488 COG2933 Predicted SAM-dependen 46.8 1.1E+02 0.0023 27.9 7.6 88 29-139 209-296 (358)
489 PRK14851 hypothetical protein; 46.8 1.2E+02 0.0026 31.3 9.1 79 31-113 42-141 (679)
490 PRK05396 tdh L-threonine 3-deh 46.7 1.1E+02 0.0024 27.9 8.3 98 30-146 162-263 (341)
491 PRK06130 3-hydroxybutyryl-CoA 46.3 95 0.0021 28.3 7.7 97 33-145 5-113 (311)
492 cd08233 butanediol_DH_like (2R 46.1 1.7E+02 0.0037 26.8 9.5 97 30-145 171-271 (351)
493 PRK07097 gluconate 5-dehydroge 46.0 1.6E+02 0.0034 25.7 8.9 83 31-115 9-97 (265)
494 PF01555 N6_N4_Mtase: DNA meth 45.9 18 0.0004 30.7 2.7 27 123-149 33-59 (231)
495 PRK07035 short chain dehydroge 45.9 1.9E+02 0.004 24.9 9.3 82 31-114 7-94 (252)
496 cd08241 QOR1 Quinone oxidoredu 45.9 2.1E+02 0.0046 25.2 10.0 97 29-145 137-237 (323)
497 PRK06172 short chain dehydroge 45.7 1.3E+02 0.0028 26.0 8.2 82 31-114 6-93 (253)
498 PRK12742 oxidoreductase; Provi 45.7 1.9E+02 0.0041 24.5 10.4 106 32-145 6-130 (237)
499 COG1250 FadB 3-hydroxyacyl-CoA 45.3 84 0.0018 29.0 7.0 104 33-145 4-117 (307)
500 PRK07523 gluconate 5-dehydroge 45.1 1.4E+02 0.003 25.8 8.4 83 31-115 9-97 (255)
No 1
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=100.00 E-value=1.6e-59 Score=432.27 Aligned_cols=271 Identities=36% Similarity=0.656 Sum_probs=208.2
Q ss_pred CCCCcch---HHhHHHHHHHHHHHHhcC------CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 021467 6 IPRSELT---HHRLYEFAKTALIKIYSH------PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN 76 (312)
Q Consensus 6 ~~R~~~~---~~~~~n~vk~~li~~~~~------~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~ 76 (312)
..|.+|+ ++++|||||++||+.+++ ++.+|||||||.|||+.||..++...|+|+|||.++|++|++|++.
T Consensus 28 ~~R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~ 107 (331)
T PF03291_consen 28 KERQESPIFHLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQ 107 (331)
T ss_dssp ------TCHHHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHH
T ss_pred hhhhhChhHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4577776 567899999999999998 8899999999999999999999999999999999999999999943
Q ss_pred c---------CCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 77 Q---------RKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 77 ~---------~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
. ...+.+.|+.+|+....+...+.....+||+|+|+|++||+|++++.++.+|+|+++.|+|||+||+|+|
T Consensus 108 ~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 108 LKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp HHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 1 1246789999999987776655544469999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHH
Q 021467 148 DSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLA 227 (312)
Q Consensus 148 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~ 227 (312)
|++.|++++++... . .....||| ++|+|+|+.+ ...|.||++|.|+|++++.+||||||+|+.|+++|
T Consensus 188 d~~~i~~~l~~~~~------~-~~~~~~gN----~~y~I~f~~~-~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la 255 (331)
T PF03291_consen 188 DSDEIVKRLREKKS------N-SEKKKFGN----SVYSIEFDSD-DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLA 255 (331)
T ss_dssp -HHHHHCCHHC-EE------E-CCCSCSET----SSEEEEESCC-SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHH
T ss_pred CHHHHHHHHHhhcc------c-ccccccCC----ccEEEEeccc-CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHH
Confidence 99999888875211 0 01124555 5799999876 57899999999999999889999999999999999
Q ss_pred HHcCcEEEEecCchHHHHhhHHHH--HHHHHhcCC-CCC-----------CCCCCCChhHHHHhh-hheeeEEeec
Q 021467 228 REAGLEYVEIQNLNEFYDDNRALF--AGMLMSAGP-NLI-----------DPRGRLLPRSYDVLG-LYSTFIFQKP 288 (312)
Q Consensus 228 ~e~Gl~lv~~~~f~~~~~~~~~~~--~~~~~~~~~-~~~-----------~~~~~l~~~e~e~~~-ly~~f~F~K~ 288 (312)
++|||++|+..+|++||+++.+.. ..+++++.. .-. ...|+||.+|||+++ ||++|||+|.
T Consensus 256 ~eyGLeLV~~~~F~ef~~e~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~ewea~~~lY~~F~F~K~ 331 (331)
T PF03291_consen 256 KEYGLELVEKKNFHEFYEEEKNKYEKRSLLERMKALEKRPGSYNDNEQKRISLGTLSKDEWEAASSLYLVFAFKKK 331 (331)
T ss_dssp HHTTEEEEEEEEHHHHHHHHCCCCHCHHHHHCHGGG--SHHHHHHHHHHHHHCCSS-CCCHHHHCTTEEEEEEEE-
T ss_pred HHcCCEEEEeCChHHHHHHhccCchhhHHHHHHHhhcCCCCcccchhhccccccCCCHHHHHHHHhheEEEEEEeC
Confidence 999999999999999999753221 122222211 000 013689999999999 9999999995
No 2
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=100.00 E-value=6.9e-59 Score=410.46 Aligned_cols=272 Identities=32% Similarity=0.506 Sum_probs=233.8
Q ss_pred CCCcch---HHhHHHHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC----
Q 021467 7 PRSELT---HHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK---- 79 (312)
Q Consensus 7 ~R~~~~---~~~~~n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~---- 79 (312)
.|..|| ++++|||||++||+.|.+++..+||||||+|||+.+|.++++..|+|+||+..+|++|++|++++..
T Consensus 90 ~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~ 169 (389)
T KOG1975|consen 90 KRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKK 169 (389)
T ss_pred hhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhc
Confidence 477777 5678999999999999999999999999999999999999999999999999999999999987532
Q ss_pred -CceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHH
Q 021467 80 -NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158 (312)
Q Consensus 80 -~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~ 158 (312)
.+++.|+++|++...+.+.+..++.+||+|+|||++||+|+++++++.+|+|++++|||||+||+|+||++.|++++++
T Consensus 170 ~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 170 FIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRA 249 (389)
T ss_pred ccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHh
Confidence 3569999999999887776654455699999999999999999999999999999999999999999999999999986
Q ss_pred hHHhhhcCCCCCCCCCCCCcccCceEEEEecccC---CCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEE
Q 021467 159 NVEAYHNRSSSMKPNLVPNCIRSESYVITFEVEE---EKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYV 235 (312)
Q Consensus 159 ~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~~~---~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv 235 (312)
. + ...|||+ +|+|+|+.+. ...|+||.+|+|+|+++|. ||||||+|+.|+.+|++|||+||
T Consensus 250 ~-e----------~~~~gNd----iykv~y~~~~~k~~~~p~fG~kY~F~LedaVd-cPEylV~F~~l~~lae~y~LeLv 313 (389)
T KOG1975|consen 250 G-E----------VERFGND----IYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVD-CPEYLVPFPTLVSLAEEYGLELV 313 (389)
T ss_pred c-c----------chhhcce----eeeEeeeeecccccCCCCccceEEEEcccccC-CcceeeehHHHHHHHHhcCcEEE
Confidence 3 1 1256775 6888876432 2379999999999999764 99999999999999999999999
Q ss_pred EecCchHHHHhhHHHH--HHHHHhcC-CCCCCCCCCCChhHHHHhhhheeeEEeecCCCCCC
Q 021467 236 EIQNLNEFYDDNRALF--AGMLMSAG-PNLIDPRGRLLPRSYDVLGLYSTFIFQKPDPDVAP 294 (312)
Q Consensus 236 ~~~~f~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~l~~~e~e~~~ly~~f~F~K~~~~~~~ 294 (312)
..++|++||+++.+.. ..|+++|. ..-...+...+.+|||++++|.+|+++|.+-...+
T Consensus 314 ~~k~F~df~~e~~~~~~~~~Llkrm~gLe~~~~~~~~~~de~e~a~~~l~~~~~~~~ir~~g 375 (389)
T KOG1975|consen 314 FVKPFADFYEEELKKNEERELLKRMEGLECYPNEEGESGDEYEAASFYLTFFPEKDRIRYEG 375 (389)
T ss_pred EeccHHHHHHHhccccchhhHHHHHhcccCCCccccccchHHHHHHHHHhhhhhcccccccc
Confidence 9999999999987654 78888873 22222344678899999999999999998754433
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.88 E-value=5e-22 Score=174.31 Aligned_cols=181 Identities=24% Similarity=0.327 Sum_probs=129.7
Q ss_pred HHHHHHHh-cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 021467 21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ 98 (312)
Q Consensus 21 k~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~ 98 (312)
+..++... ..++.+|||+|||||..+..+++. +..+++|+|+|+.||+.|+++....+... ++|+++|+...++
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf--- 115 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF--- 115 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC---
Confidence 44455544 347999999999999888877765 56799999999999999999998765444 9999999999998
Q ss_pred hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE---ecChhHHHHHHHHhHHhhhcCCCCCCCCCC
Q 021467 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNVEAYHNRSSSMKPNLV 175 (312)
Q Consensus 99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~---~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 175 (312)
++++||+|++.+++|+ ..+.+.+|+++.|+|||||++++. .|+...+...+........ - ..+
T Consensus 116 ---~D~sFD~vt~~fglrn----v~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v------~-P~~ 181 (238)
T COG2226 116 ---PDNSFDAVTISFGLRN----VTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYV------L-PLI 181 (238)
T ss_pred ---CCCccCEEEeeehhhc----CCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhH------h-hhh
Confidence 8899999999999998 446889999999999999999887 3444333332221111000 0 012
Q ss_pred CCcccCceEEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCc
Q 021467 176 PNCIRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240 (312)
Q Consensus 176 gn~~~~~~y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f 240 (312)
|..+ .. -...|.| |.+++.. +...+.|.++.++.||+.+...++
T Consensus 182 g~~~-------~~---------~~~~y~y-L~eSi~~----~p~~~~l~~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 182 GKLV-------AK---------DAEAYEY-LAESIRR----FPDQEELKQMIEKAGFEEVRYENL 225 (238)
T ss_pred ceee-------ec---------ChHHHHH-HHHHHHh----CCCHHHHHHHHHhcCceEEeeEee
Confidence 2210 00 0112444 5566543 558889999999999998885544
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.87 E-value=3.4e-22 Score=176.55 Aligned_cols=165 Identities=25% Similarity=0.371 Sum_probs=81.8
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
..++.+|||+|||+|..+..+++. +..+|+|+|+|++|++.|+++....+.. +++++++|+.+.++ ++++|
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~------~d~sf 117 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF------PDNSF 117 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-------TT-E
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC------CCCce
Confidence 347889999999999666666554 3469999999999999999999875432 69999999999888 78999
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE---ecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCce
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES 183 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~---~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~ 183 (312)
|+|+|.+++|+. .+...+++++.|+|||||.+++. .|+... +..+.+.
T Consensus 118 D~v~~~fglrn~----~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~-~~~~~~~------------------------ 168 (233)
T PF01209_consen 118 DAVTCSFGLRNF----PDRERALREMYRVLKPGGRLVILEFSKPRNPL-LRALYKF------------------------ 168 (233)
T ss_dssp EEEEEES-GGG-----SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHH-HHHHHHH------------------------
T ss_pred eEEEHHhhHHhh----CCHHHHHHHHHHHcCCCeEEEEeeccCCCCch-hhceeee------------------------
Confidence 999999999983 34777999999999999999877 454432 2222111
Q ss_pred EEEEecccCCCCCcce-------eeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCc
Q 021467 184 YVITFEVEEEKFPLFG-------KKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240 (312)
Q Consensus 184 y~i~f~~~~~~~~~~G-------~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f 240 (312)
|.- ...|.+| ..|.| |.+++.. +.+.+.|.++++++||+.++..++
T Consensus 169 y~~------~ilP~~g~l~~~~~~~Y~y-L~~Si~~----f~~~~~~~~~l~~~Gf~~v~~~~~ 221 (233)
T PF01209_consen 169 YFK------YILPLIGRLLSGDREAYRY-LPESIRR----FPSPEELKELLEEAGFKNVEYRPL 221 (233)
T ss_dssp ----------------------------------------------------------------
T ss_pred eec------ccccccccccccccccccc-ccccccc----cccccccccccccccccccccccc
Confidence 000 0112222 23666 7777644 558899999999999999887655
No 5
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.79 E-value=2.1e-18 Score=158.97 Aligned_cols=161 Identities=16% Similarity=0.218 Sum_probs=114.1
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+|||||||+|..+..++.. ..+|+|+|+|++|++.|+++.........+.++++|+.+.++ .+++||+|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~------~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD------EGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh------ccCCCCEEE
Confidence 4569999999999877766654 458999999999999999886544322358899998765443 457899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEecc
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEV 190 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~ 190 (312)
|..++|| ..+...+++++.++|||||.+++++++..... +.... .+. .|...+
T Consensus 204 ~~~vLeH----v~d~~~~L~~l~r~LkPGG~liist~nr~~~~--~~~~i--------------~~~-----eyi~~~-- 256 (322)
T PLN02396 204 SLEVIEH----VANPAEFCKSLSALTIPNGATVLSTINRTMRA--YASTI--------------VGA-----EYILRW-- 256 (322)
T ss_pred EhhHHHh----cCCHHHHHHHHHHHcCCCcEEEEEECCcCHHH--HHHhh--------------hhH-----HHHHhc--
Confidence 9999888 33467899999999999999999998864321 10000 000 010000
Q ss_pred cCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCch
Q 021467 191 EEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN 241 (312)
Q Consensus 191 ~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~ 241 (312)
.|. |. .....+++++.+.++++++||++++...+.
T Consensus 257 ----lp~-gt-----------h~~~~f~tp~eL~~lL~~aGf~i~~~~G~~ 291 (322)
T PLN02396 257 ----LPK-GT-----------HQWSSFVTPEELSMILQRASVDVKEMAGFV 291 (322)
T ss_pred ----CCC-CC-----------cCccCCCCHHHHHHHHHHcCCeEEEEeeeE
Confidence 010 10 001136789999999999999999987764
No 6
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.78 E-value=2.8e-18 Score=134.16 Aligned_cols=109 Identities=27% Similarity=0.333 Sum_probs=89.6
Q ss_pred CCCEEEEECCCCCccHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC-CCCchhhhhhhcCCceeE
Q 021467 31 PYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKANQADL 108 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~-~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~-~~~~~~~~~~~~~~~fD~ 108 (312)
|+.+|||||||+|..+..+++ .+..+++|+|+|++|++.|+++....+...+++++++|+ .... ...+||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD-------FLEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT-------TSSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc-------cCCCCCE
Confidence 578999999999988888877 366799999999999999999996555556799999999 2222 2467999
Q ss_pred EEecc-chhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 109 VCCFQ-HLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 109 V~~~~-~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
|++.. ++|..+. .++.+.+++++.+.|+|||++++..+
T Consensus 74 v~~~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 74 VICSGFTLHFLLP-LDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp EEECSGSGGGCCH-HHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EEECCCccccccc-hhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 99999 6664333 37889999999999999999998753
No 7
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.77 E-value=6.1e-18 Score=146.54 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=120.1
Q ss_pred CCCEEEEECCCCCccHHHHHHc-C------CCeEEEEeCChHHHHHHHHHHHhcCCCc--eEEEEEcCCCCCchhhhhhh
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-L------IANYIGIDVATSGIGEARDTWENQRKNF--IAEFFEADPCAENFETQMQE 101 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~------~~~v~giDis~~~i~~a~~r~~~~~~~~--~~~f~~~D~~~~~~~~~~~~ 101 (312)
++++|||+|||+|..+..++.. . ..+|+++||+++||..+++|....+... .+.++++|+.+.++
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpF------ 173 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPF------ 173 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCC------
Confidence 6789999999999777666654 2 3689999999999999999986654432 38999999999988
Q ss_pred cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe-cChh--HHHHHHHHhHHhhhcCCCCCCCCCCCCc
Q 021467 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT-PDSS--TIWAKYQKNVEAYHNRSSSMKPNLVPNC 178 (312)
Q Consensus 102 ~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~-p~~~--~l~~~~~~~~~~~~~~~~~~~~~~~gn~ 178 (312)
++.+||+.++.|+++++ .+....|+++.|+|||||+|.+.- +-.+ .+...++.
T Consensus 174 dd~s~D~yTiafGIRN~----th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~-------------------- 229 (296)
T KOG1540|consen 174 DDDSFDAYTIAFGIRNV----THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ-------------------- 229 (296)
T ss_pred CCCcceeEEEecceecC----CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh--------------------
Confidence 78999999999999883 447888999999999999999773 3222 22222211
Q ss_pred ccCceEEEEecccCCCCCccee-------eeEEeEcccccCCCccccchHHHHHHHHHcCcEEEE
Q 021467 179 IRSESYVITFEVEEEKFPLFGK-------KYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVE 236 (312)
Q Consensus 179 ~~~~~y~i~f~~~~~~~~~~G~-------~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~ 236 (312)
|+ | +.+|..|. .|+| |.+++... .+-+.|..+.+++||..+.
T Consensus 230 -----ys--f----~VlpvlG~~iagd~~sYqY-LveSI~rf----p~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 230 -----YS--F----DVLPVLGEIIAGDRKSYQY-LVESIRRF----PPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred -----hh--h----hhhchhhHhhhhhHhhhhh-HHhhhhcC----CCHHHHHHHHHHcCCcccc
Confidence 11 1 12343442 3666 66676554 4888999999999999986
No 8
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.76 E-value=1.4e-17 Score=149.90 Aligned_cols=109 Identities=19% Similarity=0.149 Sum_probs=87.5
Q ss_pred CCCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHh--cCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWEN--QRKNFIAEFFEADPCAENFETQMQEKANQ 105 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~--~~~~~~~~f~~~D~~~~~~~~~~~~~~~~ 105 (312)
.++.+|||+|||+|..+..+... + ..+|+|+|+|++|++.|+++... .....+++++++|+.+.++ ++++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~------~~~s 145 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF------DDCY 145 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC------CCCC
Confidence 46789999999999876666554 2 35899999999999999987642 1112248999999988776 6789
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
||+|++.+++|+. .+...+++++.++|||||+++++...
T Consensus 146 fD~V~~~~~l~~~----~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 146 FDAITMGYGLRNV----VDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred EeEEEEecccccC----CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 9999999999983 34788999999999999999887433
No 9
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=7.4e-18 Score=150.59 Aligned_cols=203 Identities=18% Similarity=0.216 Sum_probs=149.9
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
+.||.+|||||||.|+.+..+++.-..+|+|+++|+++.+.+++++...+...++++...|..+. .++||-
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~---------~e~fDr 140 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF---------EEPFDR 140 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc---------ccccce
Confidence 45999999999999998888887756799999999999999999999888766788888887652 355999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEe
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f 188 (312)
|++..+++| ...+....+++++.++|+|||.++..+.....- . +.
T Consensus 141 IvSvgmfEh--vg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~------------------------~------~~--- 185 (283)
T COG2230 141 IVSVGMFEH--VGKENYDDFFKKVYALLKPGGRMLLHSITGPDQ------------------------E------FR--- 185 (283)
T ss_pred eeehhhHHH--hCcccHHHHHHHHHhhcCCCceEEEEEecCCCc------------------------c------cc---
Confidence 999998888 567779999999999999999999774332100 0 00
Q ss_pred cccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhHHHHHHHHHhcCCCCCCCCCC
Q 021467 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGR 268 (312)
Q Consensus 189 ~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (312)
..+.|-.+|.| ...++.+.+.+.+.+.+.||.+....++-..|......|...++..........+.
T Consensus 186 -----~~~~~i~~yiF--------PgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~~a~~~~~e 252 (283)
T COG2230 186 -----RFPDFIDKYIF--------PGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRERFEANRDEAIALYDE 252 (283)
T ss_pred -----cchHHHHHhCC--------CCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 22456667776 23457788999999999999999999999999987777766554321111101111
Q ss_pred CChhHHHHhhhheeeEEeec
Q 021467 269 LLPRSYDVLGLYSTFIFQKP 288 (312)
Q Consensus 269 l~~~e~e~~~ly~~f~F~K~ 288 (312)
--..-|+..-.++...|+.-
T Consensus 253 ~~~r~w~~yl~~~~~~Fr~~ 272 (283)
T COG2230 253 RFYRMWELYLAACAAAFRAG 272 (283)
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 12234666666666666544
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.75 E-value=1.4e-16 Score=143.61 Aligned_cols=157 Identities=15% Similarity=0.215 Sum_probs=117.2
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
+.++.+|||||||+|..+..++.....+|+|+|+|+.+++.|+++.... .++.+.++|+...++ ++++||+
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---~~i~~~~~D~~~~~~------~~~~FD~ 120 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKIEFEANDILKKDF------PENTFDM 120 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---CceEEEECCcccCCC------CCCCeEE
Confidence 4578999999999998877776544459999999999999999987542 248899999887665 5689999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH---HHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEE
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST---IWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYV 185 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~---l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~ 185 (312)
|++..+++| .+.++...++++++++|||||.++++.+.... ....+..
T Consensus 121 V~s~~~l~h--~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~--------------------------- 171 (263)
T PTZ00098 121 IYSRDAILH--LSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKA--------------------------- 171 (263)
T ss_pred EEEhhhHHh--CCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHH---------------------------
Confidence 999888776 34557889999999999999999988443211 0000000
Q ss_pred EEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHh
Q 021467 186 ITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246 (312)
Q Consensus 186 i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~ 246 (312)
| +... ...+.+.+.+.++++++||+.+...+..+++..
T Consensus 172 ----------------~---~~~~----~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~ 209 (263)
T PTZ00098 172 ----------------Y---IKKR----KYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLE 209 (263)
T ss_pred ----------------H---HHhc----CCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHH
Confidence 0 0000 012457889999999999999998887777655
No 11
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.74 E-value=1e-17 Score=126.31 Aligned_cols=95 Identities=26% Similarity=0.351 Sum_probs=82.0
Q ss_pred EEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccch
Q 021467 36 CDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHL 115 (312)
Q Consensus 36 LDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l 115 (312)
||+|||+|..+..+.+.+..+|+|+|+|+++++.++++....+ ..+.++|+...++ ++++||+|++..++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~------~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDLPF------PDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSSSS-------TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhCcc------ccccccccccccce
Confidence 8999999988888887767799999999999999999987655 6699999999887 68999999999999
Q ss_pred hhhcCCHHHHHHHHHHHHhccCCCcEEEE
Q 021467 116 QMCFETEERARRLLQNVSSLLKPGGYFLG 144 (312)
Q Consensus 116 h~~~~~~~~~~~~l~~i~~~LkpGG~~i~ 144 (312)
|+. ++...+++++.|+|||||++++
T Consensus 71 ~~~----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHL----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred eec----cCHHHHHHHHHHHcCcCeEEeC
Confidence 983 7789999999999999999985
No 12
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.74 E-value=3.7e-17 Score=146.80 Aligned_cols=178 Identities=17% Similarity=0.178 Sum_probs=122.3
Q ss_pred HHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA 103 (312)
Q Consensus 24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~ 103 (312)
+++....++.+|||+|||+|..+..++..+ .+|+|+|+|++|++.|+++....+...+++++++|+.+... ..+
T Consensus 37 ~l~~l~~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-----~~~ 110 (255)
T PRK11036 37 LLAELPPRPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-----HLE 110 (255)
T ss_pred HHHhcCCCCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-----hcC
Confidence 444444567899999999998888877664 59999999999999999998776544458899998865321 035
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCce
Q 021467 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES 183 (312)
Q Consensus 104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~ 183 (312)
++||+|+|..++|++ .+...+++++.++|||||+++++.++.+.+..+. .+ .||.
T Consensus 111 ~~fD~V~~~~vl~~~----~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~--~~--------------~~~~----- 165 (255)
T PRK11036 111 TPVDLILFHAVLEWV----ADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHN--MV--------------AGNF----- 165 (255)
T ss_pred CCCCEEEehhHHHhh----CCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHH--HH--------------ccCh-----
Confidence 789999999999983 3456889999999999999999988875442111 00 0110
Q ss_pred EEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecC---chHHHHh
Q 021467 184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQN---LNEFYDD 246 (312)
Q Consensus 184 y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~---f~~~~~~ 246 (312)
+......+ ...+.. + .|.+.++++.+.++++++||+++.... |+++..+
T Consensus 166 -----~~~~~~~~-~~~~~~--~------~p~~~~~~~~l~~~l~~aGf~~~~~~gi~~~~~~~~~ 217 (255)
T PRK11036 166 -----DYVQAGMP-KRKKRT--L------SPDYPLDPEQVYQWLEEAGWQIMGKTGVRVFHDYLRN 217 (255)
T ss_pred -----HHHHhcCc-cccccC--C------CCCCCCCHHHHHHHHHHCCCeEeeeeeEEEEeeccCc
Confidence 00000000 000000 0 123456789999999999999997654 6666544
No 13
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.74 E-value=3.6e-17 Score=137.73 Aligned_cols=166 Identities=18% Similarity=0.220 Sum_probs=123.4
Q ss_pred HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467 23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK 102 (312)
Q Consensus 23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~ 102 (312)
.+|..+++|+.+|||||||.|..+..+...+....+|+|++++.+..|.++- +..+++|+.+. +. .+ +
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG--------v~Viq~Dld~g-L~-~f--~ 72 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG--------VSVIQGDLDEG-LA-DF--P 72 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC--------CCEEECCHHHh-Hh-hC--C
Confidence 4677788999999999999997777776667779999999999999888774 67899998663 21 11 6
Q ss_pred CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCc
Q 021467 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSE 182 (312)
Q Consensus 103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~ 182 (312)
+++||.|+++.+++. ....+.+|+++ ||-|...|+++||...+..|++-.. + |+...++
T Consensus 73 d~sFD~VIlsqtLQ~----~~~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~~-----~---------GrmPvt~ 131 (193)
T PF07021_consen 73 DQSFDYVILSQTLQA----VRRPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLLL-----R---------GRMPVTK 131 (193)
T ss_pred CCCccEEehHhHHHh----HhHHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHHh-----c---------CCCCCCC
Confidence 799999999998887 44566676666 5668899999999988877765321 1 2221111
Q ss_pred eEEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchH
Q 021467 183 SYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNE 242 (312)
Q Consensus 183 ~y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~ 242 (312)
.+ .|.|+ ++ .+-.+.+..+|+++|++.|+++++...+.+
T Consensus 132 ~l----------------Py~WY--dT---PNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 132 AL----------------PYEWY--DT---PNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred CC----------------CCccc--CC---CCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 11 24442 21 244688999999999999999999887753
No 14
>PLN02244 tocopherol O-methyltransferase
Probab=99.74 E-value=1.4e-16 Score=148.66 Aligned_cols=109 Identities=22% Similarity=0.239 Sum_probs=92.1
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.+..+...++.|+++|+.+.++ ++++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~------~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF------EDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC------CCCCccEE
Confidence 467899999999998888777654569999999999999999988776554568999999988766 57899999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
++..++||+ .+...+++++.++|||||.|+++...
T Consensus 191 ~s~~~~~h~----~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 191 WSMESGEHM----PDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred EECCchhcc----CCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999988873 34678999999999999999987543
No 15
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.74 E-value=2.9e-18 Score=148.35 Aligned_cols=171 Identities=20% Similarity=0.260 Sum_probs=116.5
Q ss_pred HHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 021467 19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ 98 (312)
Q Consensus 19 ~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~ 98 (312)
|++...-.++--++.+|||+|||-|..+..+++.+ .+|+|+|+|+.+|+.|+.+....+. .+++.+..+.+...
T Consensus 47 ~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~--- 120 (243)
T COG2227 47 YIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLAS--- 120 (243)
T ss_pred hhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHh---
Confidence 33333333333478999999999996666666656 6999999999999999999887662 13344443322111
Q ss_pred hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCc
Q 021467 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNC 178 (312)
Q Consensus 99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~ 178 (312)
..++||+|+|.-+++| .++.+.+++++.+++||||.++.+++|.......+- .+
T Consensus 121 ---~~~~FDvV~cmEVlEH----v~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~-i~------------------ 174 (243)
T COG2227 121 ---AGGQFDVVTCMEVLEH----VPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLA-II------------------ 174 (243)
T ss_pred ---cCCCccEEEEhhHHHc----cCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHH-HH------------------
Confidence 3379999999997766 566888999999999999999999999644332221 11
Q ss_pred ccCceEEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCch
Q 021467 179 IRSESYVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLN 241 (312)
Q Consensus 179 ~~~~~y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~ 241 (312)
|.+|.+.+--.......-++.++++...+.+.|+++.....+.
T Consensus 175 --------------------~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~ 217 (243)
T COG2227 175 --------------------GAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLT 217 (243)
T ss_pred --------------------HHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecceE
Confidence 0111000000011112347889999999999999999887764
No 16
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.71 E-value=1.8e-16 Score=143.19 Aligned_cols=174 Identities=20% Similarity=0.212 Sum_probs=118.9
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
++++.+|||||||.|+.+..+++....+|+|+.+|++..+.|+++.+..+...++++..+|..+ + +.+||.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~--~-------~~~fD~ 130 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD--L-------PGKFDR 130 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------------S-SE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc--c-------CCCCCE
Confidence 5689999999999999998888774559999999999999999999988776678898888644 2 359999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEe
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f 188 (312)
|++..++.+ ........+++++.++|||||.+++.+.....-..... ..
T Consensus 131 IvSi~~~Eh--vg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~--------~~--------------------- 179 (273)
T PF02353_consen 131 IVSIEMFEH--VGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAE--------RR--------------------- 179 (273)
T ss_dssp EEEESEGGG--TCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHC--------TT---------------------
T ss_pred EEEEechhh--cChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhh--------cC---------------------
Confidence 999997776 23467889999999999999999876333311110000 00
Q ss_pred cccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhHHHHHHHH
Q 021467 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGML 255 (312)
Q Consensus 189 ~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~~~~~~~~ 255 (312)
.-..|-.+|.| +..++.+.+.+...+++.||++....++...|......|...+
T Consensus 180 -----~~~~~i~kyiF--------Pgg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~~W~~~f 233 (273)
T PF02353_consen 180 -----SSSDFIRKYIF--------PGGYLPSLSEILRAAEDAGLEVEDVENLGRHYARTLRAWRENF 233 (273)
T ss_dssp -----CCCHHHHHHTS--------TTS---BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHHHHHHHH
T ss_pred -----CCceEEEEeeC--------CCCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHHHHHHHHH
Confidence 00023334444 1225778889999999999999999999999998776666544
No 17
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.71 E-value=1.8e-16 Score=141.69 Aligned_cols=112 Identities=21% Similarity=0.234 Sum_probs=92.4
Q ss_pred HHHHhcCCCCEEEEECCCCCccHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh
Q 021467 24 LIKIYSHPYVTVCDLYCGAGVDVDKWET---ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ 100 (312)
Q Consensus 24 li~~~~~~~~~VLDlGCG~G~~l~~~~~---~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~ 100 (312)
++.....++.+|||+|||+|..+..++. .+..+++|+|+|+.|++.|+++....+...+++++++|+.+.++
T Consensus 49 ~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----- 123 (247)
T PRK15451 49 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----- 123 (247)
T ss_pred HHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-----
Confidence 4455566889999999999987776665 24569999999999999999999765544468999999876543
Q ss_pred hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
..+|+|++.+++|+ .+.++...+++++.++|||||.|+++
T Consensus 124 ---~~~D~vv~~~~l~~--l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 124 ---ENASMVVLNFTLQF--LEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred ---CCCCEEehhhHHHh--CCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 45999999999998 44666789999999999999999987
No 18
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.69 E-value=2.7e-16 Score=130.09 Aligned_cols=108 Identities=23% Similarity=0.322 Sum_probs=89.5
Q ss_pred CCCEEEEECCCCCccHHHHHH-c-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 31 PYVTVCDLYCGAGVDVDKWET-A-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~-~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.+.+|||+|||+|..+..++. . +..+++|+|+|++|++.|+++.+..+.. +++|+++|+.+.+- .+ + +.||+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~--~~--~-~~~D~ 76 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQ--EL--E-EKFDI 76 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCG--CS--S-TTEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhcccc--cc--C-CCeeE
Confidence 568999999999999988884 2 4579999999999999999998876644 69999999988431 00 2 78999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
|++..++|+ ..+...+++++.++|++||.+++..+.
T Consensus 77 I~~~~~l~~----~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 77 IISNGVLHH----FPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEESTGGG----TSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEcCchhh----ccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999998887 345678899999999999999999777
No 19
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.69 E-value=7.6e-16 Score=136.91 Aligned_cols=113 Identities=21% Similarity=0.219 Sum_probs=93.4
Q ss_pred HHHHhcCCCCEEEEECCCCCccHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh
Q 021467 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ 100 (312)
Q Consensus 24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~---~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~ 100 (312)
+...+..++.+|||+|||+|..+..+++. +..+++|+|+|+.|++.|+++.+..+...++.++++|+...++
T Consensus 46 l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----- 120 (239)
T TIGR00740 46 LAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----- 120 (239)
T ss_pred HHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----
Confidence 44555667889999999999877777653 4568999999999999999998765444458999999977554
Q ss_pred hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
..+|+|++.+++|+ .+.++...+++++.++|+|||.++++.
T Consensus 121 ---~~~d~v~~~~~l~~--~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 121 ---KNASMVILNFTLQF--LPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ---CCCCEEeeecchhh--CCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 45899999999998 456678899999999999999999883
No 20
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.69 E-value=2.1e-16 Score=130.98 Aligned_cols=100 Identities=26% Similarity=0.421 Sum_probs=78.3
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
..++.+|||+|||.|..+..+...+. +++|+|+|+.+++. .. ......+...... ++++||+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~------~~-----~~~~~~~~~~~~~------~~~~fD~ 81 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK------RN-----VVFDNFDAQDPPF------PDGSFDL 81 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH------TT-----SEEEEEECHTHHC------HSSSEEE
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh------hh-----hhhhhhhhhhhhc------cccchhh
Confidence 35789999999999988888866655 99999999999987 11 2222222222112 4689999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~ 150 (312)
|+|..++|| ..+...+|+++.++|||||++++++|+..
T Consensus 82 i~~~~~l~~----~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 82 IICNDVLEH----LPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp EEEESSGGG----SSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HhhHHHHhh----cccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 999999998 23589999999999999999999999864
No 21
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.69 E-value=8.1e-16 Score=145.49 Aligned_cols=194 Identities=19% Similarity=0.181 Sum_probs=131.8
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
+.++.+|||||||+|+.+..++.....+|+|+|+|+++++.|+++.+.. .+++...|... .+++||+
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~---------l~~~fD~ 231 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRD---------LNGQFDR 231 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhh---------cCCCCCE
Confidence 4578899999999998887777654569999999999999999988532 37777777643 1368999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEe
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITF 188 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f 188 (312)
|++..++++ ........+++.+.++|||||++++........ .
T Consensus 232 Ivs~~~~eh--vg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~-------------~---------------------- 274 (383)
T PRK11705 232 IVSVGMFEH--VGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKT-------------D---------------------- 274 (383)
T ss_pred EEEeCchhh--CChHHHHHHHHHHHHHcCCCcEEEEEEccCCCC-------------C----------------------
Confidence 999988887 345667889999999999999999875432110 0
Q ss_pred cccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhhHHHHHHHHHhcCCCCCCCCCC
Q 021467 189 EVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDNRALFAGMLMSAGPNLIDPRGR 268 (312)
Q Consensus 189 ~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (312)
.....|-.+|.| ...++.+.+.+.+.++ .||++....+|...|......|...++.....+....|.
T Consensus 275 ----~~~~~~i~~yif--------p~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL~~W~~~f~~~~~~~~~~~~~ 341 (383)
T PRK11705 275 ----TNVDPWINKYIF--------PNGCLPSVRQIAQASE-GLFVMEDWHNFGADYDRTLMAWHENFEAAWPELADNYSE 341 (383)
T ss_pred ----CCCCCCceeeec--------CCCcCCCHHHHHHHHH-CCcEEEEEecChhhHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 000123344554 1124567777777655 699999999999999887666654433211111111222
Q ss_pred CChhHHHHhhhheeeEE
Q 021467 269 LLPRSYDVLGLYSTFIF 285 (312)
Q Consensus 269 l~~~e~e~~~ly~~f~F 285 (312)
--.+.|+..-.|+.-.|
T Consensus 342 ~~~r~w~~yl~~~~~~F 358 (383)
T PRK11705 342 RFYRMWRYYLLSCAGAF 358 (383)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 23456776665554333
No 22
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.68 E-value=2.2e-16 Score=139.43 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=87.4
Q ss_pred CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
.++.+|||+|||+|..+..++.. +..+|+|+|+|+++++.|+++.+..+. .+++++++|+...++ ++++||
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~------~~~~fD 116 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPF------DDNSFD 116 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCC------CCCCcc
Confidence 46789999999999877777654 345999999999999999998865443 358899999877655 467999
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
+|++.+++|+. ++...+++++.++|+|||.+++..+
T Consensus 117 ~V~~~~~l~~~----~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 117 YVTIGFGLRNV----PDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred EEEEecccccC----CCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 99999988872 3456789999999999999998643
No 23
>PRK05785 hypothetical protein; Provisional
Probab=99.68 E-value=2.1e-16 Score=139.34 Aligned_cols=160 Identities=11% Similarity=0.065 Sum_probs=106.7
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
..++.+|||+|||+|..+..+......+|+|+|+|++|++.|+++. .++++|+...++ ++++||+
T Consensus 49 ~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~------~d~sfD~ 113 (226)
T PRK05785 49 CGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPF------RDKSFDV 113 (226)
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCC------CCCCEEE
Confidence 3457899999999997777666553359999999999999998652 356888877766 6799999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCc-EEEEEecChh---HHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceE
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDSS---TIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESY 184 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG-~~i~~~p~~~---~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y 184 (312)
|++.+++|+ ..+.+.+++++.++|||.+ .+-+..|+.. .++..|.+.+.+.... .++..
T Consensus 114 v~~~~~l~~----~~d~~~~l~e~~RvLkp~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~-------~~~~~------ 176 (226)
T PRK05785 114 VMSSFALHA----SDNIEKVIAEFTRVSRKQVGFIAMGKPDNVIKRKYLSFYLRYIMPYIAC-------LAGAK------ 176 (226)
T ss_pred EEecChhhc----cCCHHHHHHHHHHHhcCceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHH-------HhcCC------
Confidence 999999987 3457789999999999954 3333355542 2333333333222111 11110
Q ss_pred EEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCc
Q 021467 185 VITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240 (312)
Q Consensus 185 ~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f 240 (312)
-..|.| |.+++.. +.+.+.+.++++++| ..+...++
T Consensus 177 --------------~~~Y~y-l~~si~~----f~~~~~~~~~~~~~~-~~~~~~~~ 212 (226)
T PRK05785 177 --------------CRDYKY-IYYIYER----LPTNSFHREIFEKYA-DIKVYEER 212 (226)
T ss_pred --------------hHHHHH-HHHHHHH----CCCHHHHHHHHHHHh-CceEEEEc
Confidence 012444 5565543 558899999999975 54555443
No 24
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.68 E-value=7.6e-16 Score=135.41 Aligned_cols=150 Identities=19% Similarity=0.199 Sum_probs=114.3
Q ss_pred CEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 33 ~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
.+|||+|||+|..+..++.. +..+++|+|+|+++++.|+++.+..+...++.++..|+...++ .++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-------~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-------PDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-------CCCCCEeeh
Confidence 37999999999888877765 3468999999999999999998876655568999999866543 358999999
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEeccc
Q 021467 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191 (312)
Q Consensus 112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~~ 191 (312)
..++|+. .+...+++++.++|||||++++..+..+.. .. .
T Consensus 74 ~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-----------------------~~----------~--- 113 (224)
T smart00828 74 FEVIHHI----KDKMDLFSNISRHLKDGGHLVLADFIANLL-----------------------SA----------I--- 113 (224)
T ss_pred HHHHHhC----CCHHHHHHHHHHHcCCCCEEEEEEcccccC-----------------------cc----------c---
Confidence 9988873 346789999999999999999875432100 00 0
Q ss_pred CCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHh
Q 021467 192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDD 246 (312)
Q Consensus 192 ~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~ 246 (312)
+. + ....|+.+.+.+.+++++.||+++...++..-|..
T Consensus 114 -------~~-------~---~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~ 151 (224)
T smart00828 114 -------EH-------E---ETTSYLVTREEWAELLARNNLRVVEGVDASLEIAN 151 (224)
T ss_pred -------cc-------c---ccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhh
Confidence 00 0 00124567888999999999999999888777755
No 25
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.67 E-value=2.6e-16 Score=121.15 Aligned_cols=96 Identities=27% Similarity=0.472 Sum_probs=78.3
Q ss_pred EEEECCCCCccHHHHHHcC----CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 35 VCDLYCGAGVDVDKWETAL----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 35 VLDlGCG~G~~l~~~~~~~----~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
|||+|||+|..+..+.... ..+++|+|+|++|++.|+++....+. +++++++|+.+.+. ..++||+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~------~~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF------SDGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH------HSSSEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc------cCCCeeEEE
Confidence 7999999999888777652 26999999999999999999876432 58999999977543 568999999
Q ss_pred eccc-hhhhcCCHHHHHHHHHHHHhccCCCc
Q 021467 111 CFQH-LQMCFETEERARRLLQNVSSLLKPGG 140 (312)
Q Consensus 111 ~~~~-lh~~~~~~~~~~~~l~~i~~~LkpGG 140 (312)
|... +|| .+.++++.+++++.++|||||
T Consensus 73 ~~~~~~~~--~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 73 CSGLSLHH--LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp E-TTGGGG--SSHHHHHHHHHHHHHTEEEEE
T ss_pred EcCCccCC--CCHHHHHHHHHHHHHHhCCCC
Confidence 9555 898 679999999999999999998
No 26
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.66 E-value=1.4e-15 Score=131.40 Aligned_cols=104 Identities=18% Similarity=0.133 Sum_probs=86.2
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+|||+|||+|..+..+++.+ .+|+|+|+|++|++.|+++....+. ..+++.++|+.+.++ +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~-------~~~fD~I~ 100 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTF-------DGEYDFIL 100 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCc-------CCCcCEEE
Confidence 56899999999998887777654 5999999999999999998876543 237788888866543 36799999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|..++|+ .+.+....+++++.++|||||++++.
T Consensus 101 ~~~~~~~--~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 101 STVVLMF--LEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred Eecchhh--CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 9999987 56778899999999999999997654
No 27
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.65 E-value=3.9e-15 Score=137.82 Aligned_cols=105 Identities=19% Similarity=0.107 Sum_probs=83.9
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+|||||||+|..+..++..+...|+|+|+|+.++.+++......+...++.++.+|+...++ +++||+|+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~~~FD~V~ 194 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------LKAFDTVF 194 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------cCCcCEEE
Confidence 57899999999998888887777778999999999998765543322212348899998866543 47899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
|..++|| ..+...++++++++|+|||.+++.+
T Consensus 195 s~~vl~H----~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 195 SMGVLYH----RRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred ECChhhc----cCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999887 3446789999999999999999874
No 28
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.64 E-value=1.6e-15 Score=125.24 Aligned_cols=140 Identities=20% Similarity=0.218 Sum_probs=99.6
Q ss_pred hHHhHHHHHHHHHHHHhcCCCC-EEEEECCCCCccHHHHHHcCCC-eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcC
Q 021467 12 THHRLYEFAKTALIKIYSHPYV-TVCDLYCGAGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEAD 89 (312)
Q Consensus 12 ~~~~~~n~vk~~li~~~~~~~~-~VLDlGCG~G~~l~~~~~~~~~-~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D 89 (312)
...++..|.+...-..-+.+.+ +|||||||+|..+..+++.+.. .++|+|.|+.+++.|+...+..+....++|.+.|
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~D 126 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLD 126 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEee
Confidence 3456667766443311133333 9999999999999999887654 4999999999999999988877666669999999
Q ss_pred CCCCchhhhhhhcCCceeEEEeccchhhh----cCCHHHHHHHHHHHHhccCCCcEEEEEecCh--hHHHHHHH
Q 021467 90 PCAENFETQMQEKANQADLVCCFQHLQMC----FETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ 157 (312)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~~lh~~----~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~--~~l~~~~~ 157 (312)
+.+..+ ..++||+|.--..+..+ -.....+...+..+.+.|+|||+|+++..|. +++.+.+.
T Consensus 127 I~~~~~------~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~ 194 (227)
T KOG1271|consen 127 ITDPDF------LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFE 194 (227)
T ss_pred ccCCcc------cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHh
Confidence 998655 34556665543322111 0112334667899999999999999998887 56665553
No 29
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.63 E-value=1.4e-14 Score=141.39 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=114.8
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.++.+|||||||+|..+..++.....+++|+|+|+++++.|+++.... ..++.|.++|+...++ ++++||+|
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~--~~~v~~~~~d~~~~~~------~~~~fD~I 336 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR--KCSVEFEVADCTKKTY------PDNSFDVI 336 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC--CCceEEEEcCcccCCC------CCCCEEEE
Confidence 467899999999998877776654568999999999999998876533 2358999999987665 56789999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEec
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFE 189 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~ 189 (312)
+|..+++|. .+...+++++.++|||||.++++.+..... . ..
T Consensus 337 ~s~~~l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~---------------~-------~~------------ 378 (475)
T PLN02336 337 YSRDTILHI----QDKPALFRSFFKWLKPGGKVLISDYCRSPG---------------T-------PS------------ 378 (475)
T ss_pred EECCccccc----CCHHHHHHHHHHHcCCCeEEEEEEeccCCC---------------C-------Cc------------
Confidence 999988873 346789999999999999999885432100 0 00
Q ss_pred ccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCchHHHHhh
Q 021467 190 VEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNLNEFYDDN 247 (312)
Q Consensus 190 ~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f~~~~~~~ 247 (312)
+.+ ..| +... .-.+.+.+.+.++++++||+.+...++.+-|...
T Consensus 379 ------~~~-~~~---~~~~----g~~~~~~~~~~~~l~~aGF~~i~~~d~~~~~~~~ 422 (475)
T PLN02336 379 ------PEF-AEY---IKQR----GYDLHDVQAYGQMLKDAGFDDVIAEDRTDQFLQV 422 (475)
T ss_pred ------HHH-HHH---HHhc----CCCCCCHHHHHHHHHHCCCeeeeeecchHHHHHH
Confidence 000 000 0000 0124467889999999999999888877776554
No 30
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.63 E-value=3.3e-15 Score=133.73 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=89.7
Q ss_pred HHHHHHhcC-CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh
Q 021467 22 TALIKIYSH-PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ 100 (312)
Q Consensus 22 ~~li~~~~~-~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~ 100 (312)
..+++.+.. +..+|||+|||+|..+..+... ..+++|+|+|+.|++.|+++... ..++++|+...++
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~~------~~~~~~d~~~~~~----- 99 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDAA------DHYLAGDIESLPL----- 99 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCCC------CCEEEcCcccCcC-----
Confidence 334443332 4679999999999777766554 46999999999999999887532 4578899877665
Q ss_pred hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (312)
Q Consensus 101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l 152 (312)
++++||+|++..++|+ ..+...++.++.++|||||.++++++....+
T Consensus 100 -~~~~fD~V~s~~~l~~----~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 146 (251)
T PRK10258 100 -ATATFDLAWSNLAVQW----CGNLSTALRELYRVVRPGGVVAFTTLVQGSL 146 (251)
T ss_pred -CCCcEEEEEECchhhh----cCCHHHHHHHHHHHcCCCeEEEEEeCCCCch
Confidence 5678999999999887 3347789999999999999999998776543
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.63 E-value=5.5e-15 Score=127.48 Aligned_cols=103 Identities=18% Similarity=0.179 Sum_probs=83.7
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.++++....+. ++.+.++|+...++ +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~-------~~~fD~I~ 99 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAAL-------NEDYDFIF 99 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccc-------cCCCCEEE
Confidence 45799999999998888777655 5999999999999999988876553 36677777754333 35799999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+..++|+ .+.+....+++++.++|||||++++.
T Consensus 100 ~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 100 STVVFMF--LQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred Eeccccc--CCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 9999887 45677889999999999999996654
No 32
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.61 E-value=5.1e-14 Score=123.53 Aligned_cols=102 Identities=21% Similarity=0.161 Sum_probs=82.2
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+|||+|||+|..+..++... .+++|+|+|++|++.|+++....+...++.+.++|+... .++||+|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~fD~ii 124 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------CGEFDIVV 124 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------CCCcCEEE
Confidence 57899999999998887776654 589999999999999999987654333588999997652 26899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEE
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~ 144 (312)
+..++++ .+.+....+++++.+++++++++.+
T Consensus 125 ~~~~l~~--~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIH--YPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EhhHHHh--CCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9988877 3456788899999999987655554
No 33
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.60 E-value=1.2e-14 Score=134.55 Aligned_cols=104 Identities=18% Similarity=0.186 Sum_probs=84.4
Q ss_pred CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.++.+|||||||+|..+..+++. +..+|+|+|+|++|++.|+++....+ ++++.+|+.+.++ ++++||+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~----i~~i~gD~e~lp~------~~~sFDv 181 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKE----CKIIEGDAEDLPF------PTDYADR 181 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccC----CeEEeccHHhCCC------CCCceeE
Confidence 36789999999999877766554 44689999999999999998865332 7789999877665 5678999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
|++..++|+ +. +....++++.++|||||.++++.+
T Consensus 182 VIs~~~L~~-~~---d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 182 YVSAGSIEY-WP---DPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred EEEcChhhh-CC---CHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999998887 22 345789999999999999987643
No 34
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.60 E-value=4.9e-15 Score=133.02 Aligned_cols=107 Identities=21% Similarity=0.182 Sum_probs=85.0
Q ss_pred HHHHHhc-CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh
Q 021467 23 ALIKIYS-HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ 100 (312)
Q Consensus 23 ~li~~~~-~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~ 100 (312)
.++..+. .++.+|||||||+|..+..+... +..+|+|+|+|+.|++.|+++ + ++++++|+.+..
T Consensus 20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~----~~~~~~d~~~~~------ 85 (255)
T PRK14103 20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----G----VDARTGDVRDWK------ 85 (255)
T ss_pred HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----C----CcEEEcChhhCC------
Confidence 3444443 36789999999999877776655 346899999999999999764 2 678899986532
Q ss_pred hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
.+++||+|+|..++|++ .+...+++++.++|||||.+++++++
T Consensus 86 -~~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 86 -PKPDTDVVVSNAALQWV----PEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred -CCCCceEEEEehhhhhC----CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 34789999999999983 24678899999999999999998765
No 35
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.59 E-value=3.3e-14 Score=121.54 Aligned_cols=115 Identities=19% Similarity=0.117 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (312)
Q Consensus 18 n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~ 96 (312)
.++.+..+..+++++.+|||+|||+|..+..++.. +..+|+|+|+|++|++.|+++.+..+.. .++++++|+.+...
T Consensus 32 ~~~d~l~l~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~- 109 (187)
T PRK00107 32 HILDSLAIAPYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ- 109 (187)
T ss_pred HHHHHHHHHhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC-
Confidence 44556666777777899999999999777766653 5579999999999999999998887643 38999999866332
Q ss_pred hhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
.++||+|+|... . ....+++.+.++|||||++++..+.
T Consensus 110 ------~~~fDlV~~~~~-~-------~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 110 ------EEKFDVVTSRAV-A-------SLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred ------CCCccEEEEccc-c-------CHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 468999998652 2 2577899999999999999988544
No 36
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.59 E-value=6.8e-15 Score=132.19 Aligned_cols=103 Identities=29% Similarity=0.376 Sum_probs=84.6
Q ss_pred CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.++.+|||||||+|..+..++.. +..+++|+|+|+.|++.|+++... +.++.+|+.... ...+||+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~------~~~~~~d~~~~~-------~~~~fD~ 96 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPD------CQFVEADIASWQ-------PPQALDL 96 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCC------CeEEECchhccC-------CCCCccE
Confidence 46789999999999877777654 456999999999999999987632 778899986532 2468999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
|++..++|++ .+...+++++.++|||||.+++++|+.
T Consensus 97 v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 97 IFANASLQWL----PDHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred EEEccChhhC----CCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 9999999983 236789999999999999999987764
No 37
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.59 E-value=3.2e-16 Score=120.02 Aligned_cols=98 Identities=27% Similarity=0.327 Sum_probs=62.5
Q ss_pred EEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccc
Q 021467 36 CDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQH 114 (312)
Q Consensus 36 LDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~ 114 (312)
||+|||+|..+..++.. +..+|+|+|+|+.|++.|+++....... .......+..+.... ...++||+|++..+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDY----DPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---C----CC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhc----ccccccceehhhhh
Confidence 79999999888888766 5669999999999999999998775421 122333332221110 01259999999999
Q ss_pred hhhhcCCHHHHHHHHHHHHhccCCCcEE
Q 021467 115 LQMCFETEERARRLLQNVSSLLKPGGYF 142 (312)
Q Consensus 115 lh~~~~~~~~~~~~l~~i~~~LkpGG~~ 142 (312)
+||+ ++.+.++++++++|||||.|
T Consensus 76 l~~l----~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 76 LHHL----EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TS------S-HHHHHHHHTTT-TSS-EE
T ss_pred Hhhh----hhHHHHHHHHHHHcCCCCCC
Confidence 9994 67889999999999999986
No 38
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.59 E-value=5.9e-15 Score=128.81 Aligned_cols=120 Identities=22% Similarity=0.308 Sum_probs=92.6
Q ss_pred HHHHHHHHHHh--cCCC------CEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC-----CCceEE
Q 021467 18 EFAKTALIKIY--SHPY------VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR-----KNFIAE 84 (312)
Q Consensus 18 n~vk~~li~~~--~~~~------~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~-----~~~~~~ 84 (312)
.||...+..+. ..|+ .+|||+|||.|-....+++.+ +.|+|||+++.||+.|++.....+ ..++++
T Consensus 68 ~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~ 146 (282)
T KOG1270|consen 68 PFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLE 146 (282)
T ss_pred hHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeee
Confidence 34555555554 2233 789999999997777777666 599999999999999999844322 234566
Q ss_pred EEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467 85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (312)
Q Consensus 85 f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~ 151 (312)
+.+.|+... .+.||+|+|..+++| ..++..++..+.++|||||.+++++.+...
T Consensus 147 ~~~~~~E~~---------~~~fDaVvcsevleH----V~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 147 YEDTDVEGL---------TGKFDAVVCSEVLEH----VKDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred hhhcchhhc---------ccccceeeeHHHHHH----HhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 766666552 356999999998887 777999999999999999999999888643
No 39
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.59 E-value=1.7e-14 Score=131.69 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=86.8
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.++++.+..+. ++++...|+....+ +++||+|+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-------~~~fD~I~ 189 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-------QEEYDFIL 189 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-------cCCccEEE
Confidence 34599999999998888877665 5999999999999999998876553 47788888766433 47899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
+..++|+ .+.++...+++++.++|+|||++++..
T Consensus 190 ~~~vl~~--l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 190 STVVLMF--LNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred Ecchhhh--CCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999987 567788999999999999999977653
No 40
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.58 E-value=2.7e-14 Score=123.91 Aligned_cols=100 Identities=14% Similarity=0.165 Sum_probs=81.8
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
++++.+|||+|||+|..+..+... +..+++|+|+|++|++.|+++... +.+.++|+.+ ++ ++++||
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~------~~~~~~d~~~-~~------~~~sfD 107 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPN------INIIQGSLFD-PF------KDNFFD 107 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCC------CcEEEeeccC-CC------CCCCEE
Confidence 456789999999999877777665 457999999999999999887532 5678888876 44 568999
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|++..++|| .+.+.+..+++++.+++ ++++++.
T Consensus 108 ~V~~~~vL~h--l~p~~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 108 LVLTKGVLIH--INPDNLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred EEEECChhhh--CCHHHHHHHHHHHHhhc--CcEEEEE
Confidence 9999999988 46788899999999998 4566665
No 41
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.57 E-value=2.4e-14 Score=131.54 Aligned_cols=106 Identities=15% Similarity=0.019 Sum_probs=81.2
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+|||+|||+|..+..++..+...|+|+|+|+.|+.+++..-+......++.+..+|+.+.+. ..+||+|+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-------~~~FD~V~ 193 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-------LYAFDTVF 193 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-------CCCcCEEE
Confidence 67899999999998877777777678999999999998764432211111236777777655432 35899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
|..+++| ..+...+|++++++|||||.|++.+.
T Consensus 194 s~gvL~H----~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 194 SMGVLYH----RKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred Ecchhhc----cCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 9998887 34567899999999999999998753
No 42
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.57 E-value=3.1e-14 Score=128.33 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=90.9
Q ss_pred hHHhHHHHHHHHHHHHh-cCCCCEEEEECCCCCccHH----HHHHc------CCCeEEEEeCChHHHHHHHHHHHh----
Q 021467 12 THHRLYEFAKTALIKIY-SHPYVTVCDLYCGAGVDVD----KWETA------LIANYIGIDVATSGIGEARDTWEN---- 76 (312)
Q Consensus 12 ~~~~~~n~vk~~li~~~-~~~~~~VLDlGCG~G~~l~----~~~~~------~~~~v~giDis~~~i~~a~~r~~~---- 76 (312)
....+.+.+...++... ..++.+|||+|||+|.... .+... ...+|+|+|+|+.||+.|++..-.
T Consensus 79 ~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~ 158 (264)
T smart00138 79 HFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPEREL 158 (264)
T ss_pred HHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHH
Confidence 34445555555555432 2245799999999996322 22221 135899999999999999985310
Q ss_pred --c------------C--------CCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHh
Q 021467 77 --Q------------R--------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS 134 (312)
Q Consensus 77 --~------------~--------~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~ 134 (312)
. + ....+.|.++|+.+.++ +.++||+|+|.+++|| .+.+....+++++++
T Consensus 159 ~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~------~~~~fD~I~crnvl~y--f~~~~~~~~l~~l~~ 230 (264)
T smart00138 159 EDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP------PLGDFDLIFCRNVLIY--FDEPTQRKLLNRFAE 230 (264)
T ss_pred hcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC------ccCCCCEEEechhHHh--CCHHHHHHHHHHHHH
Confidence 0 0 01247899999988654 4689999999999998 467788899999999
Q ss_pred ccCCCcEEEEE
Q 021467 135 LLKPGGYFLGI 145 (312)
Q Consensus 135 ~LkpGG~~i~~ 145 (312)
+|+|||++++.
T Consensus 231 ~L~pGG~L~lg 241 (264)
T smart00138 231 ALKPGGYLFLG 241 (264)
T ss_pred HhCCCeEEEEE
Confidence 99999999976
No 43
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.56 E-value=3.6e-14 Score=119.61 Aligned_cols=102 Identities=23% Similarity=0.286 Sum_probs=86.1
Q ss_pred CEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEE-EEEcCCCCCc-hhhhhhhcCCceeEEE
Q 021467 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAE-FFEADPCAEN-FETQMQEKANQADLVC 110 (312)
Q Consensus 33 ~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~-f~~~D~~~~~-~~~~~~~~~~~fD~V~ 110 (312)
..||++|||+|.....+--.+..+|+++|+++.|-+.|.++++++.. .++. |++++..+.+ + .++++|.|+
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l------~d~s~DtVV 150 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQL------ADGSYDTVV 150 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCccc------ccCCeeeEE
Confidence 46799999999776665445778999999999999999999887643 3344 9999988765 4 579999999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|.+ ++.|.+++.+.|+++.++|||||++++.
T Consensus 151 ~Tl----vLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 151 CTL----VLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEE----EEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999 4566888999999999999999999988
No 44
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.56 E-value=2.8e-14 Score=121.63 Aligned_cols=103 Identities=18% Similarity=0.249 Sum_probs=84.0
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
+..++||||||.|+++..++..+. .|+++|+|+.+++.+++..+..+ .+++..+.|+.+..+ ++.||+|+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~--l~i~~~~~Dl~~~~~-------~~~yD~I~ 99 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEG--LDIRTRVADLNDFDF-------PEEYDFIV 99 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS--------TTTEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcC--ceeEEEEecchhccc-------cCCcCEEE
Confidence 568999999999999999988777 89999999999999988776654 348888999877655 36899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+..++++ ...+....+++++.+.++|||++++.
T Consensus 100 st~v~~f--L~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 100 STVVFMF--LQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp EESSGGG--S-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEecc--CCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 9888877 66788899999999999999998875
No 45
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.56 E-value=4.5e-13 Score=123.13 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=84.4
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhhhcCCc
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEKANQ 105 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~-~~~~~~~~~~~~ 105 (312)
++++.+|||+|||+|..+..++... ..+|+|+|+|++||+.|+++........++.++++|+.+. ++.... ....
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~ 138 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGR 138 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCC
Confidence 3467899999999998888777663 4689999999999999999876543345678899998763 221100 0113
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
..++++..++++ .+.++...+|++++++|+|||.|++.
T Consensus 139 ~~~~~~gs~~~~--~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 139 RLGFFPGSTIGN--FTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred eEEEEecccccC--CCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 344555566776 45888999999999999999999876
No 46
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.55 E-value=4.7e-14 Score=127.85 Aligned_cols=101 Identities=19% Similarity=0.330 Sum_probs=81.0
Q ss_pred CCCEEEEECCCCCccHHHHHHc-C---CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-L---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~---~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
+..+|||+|||+|..+..+... + ...++|+|+|+.|++.|+++.. .+.+.++|+.+.++ .+++|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~------~~~~~~~d~~~lp~------~~~sf 152 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP------QVTFCVASSHRLPF------ADQSL 152 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC------CCeEEEeecccCCC------cCCce
Confidence 5578999999999877766543 1 2379999999999999987753 27789999887666 56899
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~ 154 (312)
|+|++.++. ..++++.++|||||+|++.+|....++.
T Consensus 153 D~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l~e 189 (272)
T PRK11088 153 DAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHLFE 189 (272)
T ss_pred eEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcchHH
Confidence 999987642 2357899999999999999999877654
No 47
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.55 E-value=1.9e-13 Score=116.36 Aligned_cols=101 Identities=22% Similarity=0.174 Sum_probs=80.3
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
++.+|||+|||+|.....++.. +..+|+|+|+|+.|++.++++.+..+.. +++++++|+.+.. ..++||+|
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-------~~~~fD~I 113 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-------HEEQFDVI 113 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-------ccCCccEE
Confidence 4789999999999776666544 3468999999999999999888766532 4899999987632 24789999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
++.. +++ ...+++.+.++|+|||.+++...
T Consensus 114 ~s~~-~~~-------~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 114 TSRA-LAS-------LNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred Eehh-hhC-------HHHHHHHHHHhcCCCCEEEEEcC
Confidence 9866 554 56678889999999999998744
No 48
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.55 E-value=6.3e-14 Score=123.68 Aligned_cols=107 Identities=21% Similarity=0.301 Sum_probs=88.1
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.+.+|||+|||+|..+..++.. ...+++|+|+|+.+++.++++... ++.++.+|+...++ ++++||+|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----~~~~~~~d~~~~~~------~~~~fD~v 102 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----NVQFICGDAEKLPL------EDSSFDLI 102 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----CCeEEecchhhCCC------CCCceeEE
Confidence 3478999999999877777665 345799999999999999988753 27789999887665 46789999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l 152 (312)
++..++|+ ..+...+++++.++|+|||.+++..+....+
T Consensus 103 i~~~~l~~----~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~ 141 (240)
T TIGR02072 103 VSNLALQW----CDDLSQALSELARVLKPGGLLAFSTFGPGTL 141 (240)
T ss_pred EEhhhhhh----ccCHHHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence 99999998 3346789999999999999999998777544
No 49
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.54 E-value=2.1e-13 Score=115.10 Aligned_cols=111 Identities=19% Similarity=0.206 Sum_probs=87.0
Q ss_pred CCCEEEEECCCCCccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
+..+|||+|||+|.....+++... .+++++|+++.+++.|++..+.++... ++++..|+.+.. ++.+||+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~-------~~~~fD~I 102 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEAL-------PDGKFDLI 102 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTC-------CTTCEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccc-------cccceeEE
Confidence 678999999999977777766544 379999999999999999998877544 889999987632 35899999
Q ss_pred EeccchhhhcC-CHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 110 CCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 110 ~~~~~lh~~~~-~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
+|+..+|.... .....+.+++...++|||||.+++.....
T Consensus 103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp EE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred EEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 99988776322 23467899999999999999998775544
No 50
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.54 E-value=5.6e-14 Score=121.82 Aligned_cols=122 Identities=17% Similarity=0.077 Sum_probs=89.9
Q ss_pred hcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC-CCCchhhhhhhcCCc
Q 021467 28 YSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP-CAENFETQMQEKANQ 105 (312)
Q Consensus 28 ~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~-~~~~~~~~~~~~~~~ 105 (312)
+..++.+|||+|||+|..+..++.. +..+|+|+|+|+++++.|+++....+. .++.++++|+ ...+ ..+ ++++
T Consensus 37 ~~~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~--~~~--~~~~ 111 (202)
T PRK00121 37 FGNDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLL--DMF--PDGS 111 (202)
T ss_pred cCCCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHH--HHc--Cccc
Confidence 3446789999999999888777654 446899999999999999998876543 3488999998 3322 011 3578
Q ss_pred eeEEEeccchhhhc----CCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467 106 ADLVCCFQHLQMCF----ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (312)
Q Consensus 106 fD~V~~~~~lh~~~----~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~ 154 (312)
||+|++.+..++.. ........+++++.++|||||+|++++++...+..
T Consensus 112 ~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~ 164 (202)
T PRK00121 112 LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEY 164 (202)
T ss_pred cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHH
Confidence 99999987543211 00112477899999999999999999888765544
No 51
>PRK06202 hypothetical protein; Provisional
Probab=99.54 E-value=1.7e-13 Score=121.27 Aligned_cols=101 Identities=19% Similarity=0.140 Sum_probs=75.0
Q ss_pred CCCEEEEECCCCCccHHHHHHc----C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA----L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~----~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~ 105 (312)
++.+|||+|||+|..+..++.. + ..+|+|+|+|++|++.|+++....+ +.+.+.|+...+. .+++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~------~~~~ 129 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVA------EGER 129 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccc------cCCC
Confidence 5679999999999766655431 2 2489999999999999998865433 4555555544333 3578
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
||+|+|.+++|| .+.++...+++++.++++ |.+++.
T Consensus 130 fD~V~~~~~lhh--~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 130 FDVVTSNHFLHH--LDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred ccEEEECCeeec--CChHHHHHHHHHHHHhcC--eeEEEe
Confidence 999999999999 334557789999999998 444444
No 52
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.52 E-value=3.9e-13 Score=106.48 Aligned_cols=106 Identities=13% Similarity=0.050 Sum_probs=82.2
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
..++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++.+..+.. +++++..|+..... ....+||
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~D 90 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALE-----DSLPEPD 90 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccCh-----hhcCCCC
Confidence 346789999999999988888765 3469999999999999999887765422 47888888653211 0236899
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
+|++....+. ...+++++.+.|+|||.|++++.
T Consensus 91 ~v~~~~~~~~-------~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 91 RVFIGGSGGL-------LQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred EEEECCcchh-------HHHHHHHHHHHcCCCCEEEEEec
Confidence 9998764433 56899999999999999998753
No 53
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.52 E-value=2.1e-13 Score=119.02 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=84.1
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-----------CCCceEEEEEcCCCCCchhhh
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFETQ 98 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~-----------~~~~~~~f~~~D~~~~~~~~~ 98 (312)
+++.+|||+|||.|.++..++.++. +|+|+|+|+.+++.+.+..... ....+++++++|+.+.+..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~-- 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA-- 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc--
Confidence 4678999999999999998877655 8999999999999864422110 0123488999999875431
Q ss_pred hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
..++||.|+...++|+ ...+.....++.+.++|||||++++.
T Consensus 110 ---~~~~fD~i~D~~~~~~--l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 110 ---DLGPVDAVYDRAALIA--LPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred ---cCCCcCEEEechhhcc--CCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 1357999998888776 46888899999999999999986655
No 54
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.52 E-value=1.2e-12 Score=120.42 Aligned_cols=105 Identities=21% Similarity=0.296 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC----CCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~----~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
++.+|||+|||+|..+..+...+ .+|+|+|+|+.|++.|+++.+... ....+.|.+.|+.. .+++|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~---------l~~~f 213 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES---------LSGKY 213 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh---------cCCCc
Confidence 56899999999998777777654 589999999999999999986531 11247788888643 24789
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
|+|+|..+++| ...+....+++.+.+ +.+||.++...|.
T Consensus 214 D~Vv~~~vL~H--~p~~~~~~ll~~l~~-l~~g~liIs~~p~ 252 (315)
T PLN02585 214 DTVTCLDVLIH--YPQDKADGMIAHLAS-LAEKRLIISFAPK 252 (315)
T ss_pred CEEEEcCEEEe--cCHHHHHHHHHHHHh-hcCCEEEEEeCCc
Confidence 99999999776 334456677887775 4667766654454
No 55
>PRK06922 hypothetical protein; Provisional
Probab=99.51 E-value=1.2e-13 Score=135.67 Aligned_cols=108 Identities=23% Similarity=0.277 Sum_probs=87.8
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc--hhhhhhhcCCcee
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN--FETQMQEKANQAD 107 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~--~~~~~~~~~~~fD 107 (312)
++.+|||+|||+|..+..++.. +..+++|+|+|+.|++.|+++....+ .++.++++|+.+.+ + ++++||
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f------edeSFD 489 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF------EKESVD 489 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc------CCCCEE
Confidence 5789999999999777766653 55699999999999999998875443 24778889987643 3 467899
Q ss_pred EEEeccchhhhcC---------CHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 108 LVCCFQHLQMCFE---------TEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 108 ~V~~~~~lh~~~~---------~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
+|++..++|+++. +......+++++.++|||||.+++.-
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9999999997532 34678999999999999999999873
No 56
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.51 E-value=1.1e-13 Score=125.47 Aligned_cols=105 Identities=24% Similarity=0.260 Sum_probs=84.3
Q ss_pred CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
.++.+|||+|||+|..+..++.. ...+|+|+|+|+.|++.|+++....+. .++.+..+|+...++ ++++||
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~------~~~~fD 148 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPV------ADNSVD 148 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCC------CCCcee
Confidence 47889999999999766554443 234799999999999999998766543 247899999877555 467999
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|++..++|+. .+...+++++.++|||||+++++
T Consensus 149 ~Vi~~~v~~~~----~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 149 VIISNCVINLS----PDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEEEcCcccCC----CCHHHHHHHHHHHcCCCcEEEEE
Confidence 99999988872 33567899999999999999987
No 57
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.51 E-value=1.1e-13 Score=116.96 Aligned_cols=105 Identities=19% Similarity=0.296 Sum_probs=82.4
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
...++||+|||.|..+..++.. ..+++++|+|+.+|+.|++|..... .++++++|+.... +.++||+|+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~~---~V~~~~~dvp~~~-------P~~~FDLIV 111 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGLP---HVEWIQADVPEFW-------PEGRFDLIV 111 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-S---SEEEEES-TTT----------SS-EEEEE
T ss_pred ccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCCC---CeEEEECcCCCCC-------CCCCeeEEE
Confidence 4478999999999877777554 4699999999999999999998754 3999999996643 468999999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
+..+++| +.+.++++.++.++...|+|||.+++...
T Consensus 112 ~SEVlYY-L~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 112 LSEVLYY-LDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EES-GGG-SSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EehHhHc-CCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9999998 55678899999999999999999997744
No 58
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.51 E-value=1.7e-12 Score=114.31 Aligned_cols=99 Identities=20% Similarity=0.176 Sum_probs=78.2
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.++.+|||+|||+|..+..++..+. .|+|+|+|+.|++.|+++....+...++.+..+|+.. .+++||+|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---------~~~~fD~v 131 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---------LLGRFDTV 131 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---------ccCCcCEE
Confidence 3678999999999988887776654 7999999999999999998765433358888888422 34789999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCc
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGG 140 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG 140 (312)
++..++|+ .+.+....+++++.+.+++++
T Consensus 132 ~~~~~l~~--~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 132 VCLDVLIH--YPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred EEcchhhc--CCHHHHHHHHHHHHhhcCCeE
Confidence 99999876 346678889999998775444
No 59
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.50 E-value=6.4e-13 Score=117.53 Aligned_cols=107 Identities=22% Similarity=0.276 Sum_probs=83.7
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+|||||||+|..+..+.+.+ .+++|+|+++.+++.|+++....+. .+.+...|...... ...++||+|+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~fD~Ii 119 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAA-----EHPGQFDVVT 119 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhh-----hcCCCccEEE
Confidence 67899999999998777666654 5899999999999999988765432 36677776654321 1347899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
+..++++ ..+...+++++.+.|+|||.++++.++.
T Consensus 120 ~~~~l~~----~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 120 CMEMLEH----VPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred EhhHhhc----cCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 9987776 3346788999999999999999987764
No 60
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.50 E-value=2.9e-13 Score=119.60 Aligned_cols=105 Identities=25% Similarity=0.316 Sum_probs=86.4
Q ss_pred CCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
++.+|||+|||+|..+..++... ..+++|+|+++.+++.|+++....+...++.++.+|+....+ ..++||+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~~D~ 124 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNSFDA 124 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCCccE
Confidence 57899999999998888777664 379999999999999999988654333458899999877554 4578999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|++..++|+ ..+...+++++.++|+|||.+++.
T Consensus 125 I~~~~~l~~----~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 125 VTIAFGLRN----VPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred EEEeccccc----CCCHHHHHHHHHHhccCCcEEEEE
Confidence 999988887 334678899999999999999876
No 61
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.49 E-value=5.8e-13 Score=121.65 Aligned_cols=111 Identities=19% Similarity=0.159 Sum_probs=86.0
Q ss_pred HHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA 103 (312)
Q Consensus 24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~ 103 (312)
++..+..++.+|||+|||+|..+..+++.+..+++|+|+|+.+++.|+++...++....+.+...|... . ..
T Consensus 152 ~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~------~~ 223 (288)
T TIGR00406 152 WLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--P------IE 223 (288)
T ss_pred HHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--c------cC
Confidence 345556678999999999998777766666679999999999999999998876654445666655221 1 34
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
++||+|+++...+. ...++.++.++|||||+++++..-.
T Consensus 224 ~~fDlVvan~~~~~-------l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 224 GKADVIVANILAEV-------IKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred CCceEEEEecCHHH-------HHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 68999999775443 5788999999999999999986544
No 62
>PLN03075 nicotianamine synthase; Provisional
Probab=99.49 E-value=5e-13 Score=120.93 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=87.6
Q ss_pred CCCEEEEECCCCCccHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHh-cCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWEN-QRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~---~~~~v~giDis~~~i~~a~~r~~~-~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
+..+|+|||||.|+....++.+ +..+++|+|+++++++.|++.+.. .+...+++|.++|+.+... ..+.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~------~l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE------SLKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc------ccCCc
Confidence 6689999999999765555432 456899999999999999999854 4445569999999977422 23689
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
|+|+|. ++|| .+.++...+++++++.|+|||.+++-..
T Consensus 197 DlVF~~-ALi~--~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 197 DVVFLA-ALVG--MDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred CEEEEe-cccc--cccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 999999 8998 4457788999999999999999998753
No 63
>PRK08317 hypothetical protein; Provisional
Probab=99.48 E-value=5.5e-13 Score=117.52 Aligned_cols=109 Identities=25% Similarity=0.312 Sum_probs=87.7
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
..++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.... ...+.+..+|+...++ .+++|
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~~~~ 88 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF------PDGSF 88 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC------CCCCc
Confidence 347789999999999888777654 3468999999999999999883322 2348889999877555 45789
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
|+|++..++++ ..+...+++++.++|||||.+++..++.
T Consensus 89 D~v~~~~~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 127 (241)
T PRK08317 89 DAVRSDRVLQH----LEDPARALAEIARVLRPGGRVVVLDTDW 127 (241)
T ss_pred eEEEEechhhc----cCCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 99999998877 3347788999999999999999887653
No 64
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.48 E-value=1.6e-12 Score=114.12 Aligned_cols=109 Identities=23% Similarity=0.282 Sum_probs=85.2
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
.+.+|||+|||+|..+..++... .+++|+|+++.+++.++++....+. .++.+.+.|+...... ..++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~-----~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEK-----GAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcC-----CCCCccEEE
Confidence 47899999999998777766654 4799999999999999998875432 1377778876543321 137899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~ 150 (312)
+...+|+ ..+...+++++.++|+|||.+++..++..
T Consensus 118 ~~~~l~~----~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 153 (224)
T TIGR01983 118 CMEVLEH----VPDPQAFIRACAQLLKPGGILFFSTINRT 153 (224)
T ss_pred ehhHHHh----CCCHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 9998887 34567899999999999999998877653
No 65
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.48 E-value=1e-12 Score=121.12 Aligned_cols=105 Identities=13% Similarity=0.081 Sum_probs=87.9
Q ss_pred CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.+..+|||||||+|..+..+++. +..+++++|+ +.+++.|+++.+..+...+++++.+|+.+.++ ..+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~--------~~~D~ 218 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY--------PEADA 218 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC--------CCCCE
Confidence 35689999999999888877766 4468999998 78999999998877655679999999876544 23699
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|++...+|+ .+.+....+++++.++|+|||++++.
T Consensus 219 v~~~~~lh~--~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 219 VLFCRILYS--ANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EEeEhhhhc--CChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999888887 45677789999999999999999987
No 66
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.48 E-value=9.6e-14 Score=109.27 Aligned_cols=113 Identities=22% Similarity=0.214 Sum_probs=86.6
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
|.+|||+|||+|..+...++....+++|+|+++..++.|+.+....+...+++++++|..+.. ..+ .+++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~--~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP--EPL--PDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH--HTC--TTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch--hhc--cCceeEEEEE
Confidence 468999999999888877776657999999999999999999988765556999999975532 111 4689999999
Q ss_pred ccchhhhcCCH----HHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 112 FQHLQMCFETE----ERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 112 ~~~lh~~~~~~----~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
+-..+...... .....+++.+.++|||||.+++.+|+
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 87655321111 24578899999999999999998874
No 67
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.47 E-value=6.8e-13 Score=115.97 Aligned_cols=103 Identities=24% Similarity=0.296 Sum_probs=85.3
Q ss_pred CCCEEEEECCCCCccHHHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~--~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
++.+|||+|||+|..+..++.... .+++|+|+++.+++.++++... ..++.+..+|+.+.++ ..++||+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~---~~~i~~~~~d~~~~~~------~~~~~D~ 109 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL---PLNIEFIQADAEALPF------EDNSFDA 109 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc---CCCceEEecchhcCCC------CCCcEEE
Confidence 678999999999988888877644 4899999999999999988751 2247888999877554 4578999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
|++.+++|+ ..+...+++++.+.|+|||++++..
T Consensus 110 i~~~~~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 110 VTIAFGLRN----VTDIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EEEeeeeCC----cccHHHHHHHHHHHcCCCcEEEEEE
Confidence 999998876 3457789999999999999999763
No 68
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.47 E-value=8.5e-13 Score=113.65 Aligned_cols=159 Identities=15% Similarity=0.157 Sum_probs=104.2
Q ss_pred HHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC--chhhhhhhcC
Q 021467 26 KIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQEKA 103 (312)
Q Consensus 26 ~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~--~~~~~~~~~~ 103 (312)
..+++++.+|||+|||+|..+..+.......++|+|+|+++++.|+++ + ++++++|+... ++ .+
T Consensus 8 ~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~----~~~~~~d~~~~l~~~------~~ 73 (194)
T TIGR02081 8 LNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----G----VNVIQGDLDEGLEAF------PD 73 (194)
T ss_pred HHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----C----CeEEEEEhhhccccc------CC
Confidence 344567889999999999877776555555789999999999988652 2 56788887542 12 45
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCce
Q 021467 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSES 183 (312)
Q Consensus 104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~ 183 (312)
++||+|+|..++|++ .+...+++++.+.+ |..++++|+......+..- ..++ ..
T Consensus 74 ~sfD~Vi~~~~l~~~----~d~~~~l~e~~r~~---~~~ii~~p~~~~~~~~~~~-----~~~~---------~~----- 127 (194)
T TIGR02081 74 KSFDYVILSQTLQAT----RNPEEILDEMLRVG---RHAIVSFPNFGYWRVRWSI-----LTKG---------RM----- 127 (194)
T ss_pred CCcCEEEEhhHhHcC----cCHHHHHHHHHHhC---CeEEEEcCChhHHHHHHHH-----HhCC---------cc-----
Confidence 789999999999883 34666777776654 5567778876544332211 0010 00
Q ss_pred EEEEecccCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCc
Q 021467 184 YVITFEVEEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240 (312)
Q Consensus 184 y~i~f~~~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f 240 (312)
. . .... .|.+. +. .+..+.+.+.+.++++++||++++...+
T Consensus 128 ~---~---~~~~-----~~~~~--~~---~~~~~~s~~~~~~ll~~~Gf~v~~~~~~ 168 (194)
T TIGR02081 128 P---V---TGEL-----PYDWY--NT---PNIHFCTIADFEDLCGELNLRILDRAAF 168 (194)
T ss_pred c---c---CCCC-----Ccccc--CC---CCcccCcHHHHHHHHHHCCCEEEEEEEe
Confidence 0 0 0000 01110 10 1224668999999999999999998766
No 69
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.47 E-value=1.5e-12 Score=122.26 Aligned_cols=108 Identities=18% Similarity=0.166 Sum_probs=85.5
Q ss_pred CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCC--ceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~--~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
+.+|||+|||+|.....++.. +..+|+++|+|+.+++.|+++++.++.. .+++++..|+.+. + ...+||+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~------~~~~fDl 301 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-V------EPFRFNA 301 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-C------CCCCEEE
Confidence 469999999999877776655 4569999999999999999998765422 2578888887652 2 2468999
Q ss_pred EEeccchhhhc-CCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 109 VCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 109 V~~~~~lh~~~-~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
|+|+..+|... .+.....++++.+.++|+|||.+++..
T Consensus 302 IlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 302 VLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 99998877632 234557889999999999999999885
No 70
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.47 E-value=1.1e-12 Score=114.92 Aligned_cols=109 Identities=17% Similarity=0.074 Sum_probs=84.0
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-----------CCCceEEEEEcCCCCCchhh
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFET 97 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~-----------~~~~~~~f~~~D~~~~~~~~ 97 (312)
..++.+|||+|||.|.++..++..+. +|+|+|+|+.+|+.+.+..... -...+++++++|+.+....
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~- 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA- 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc-
Confidence 34678999999999999998877655 8999999999999874321110 0123488899999876431
Q ss_pred hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 98 ~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
..+.||+|....++|+ .+.+....+++.+.++|+|||++++.
T Consensus 113 ----~~~~fd~v~D~~~~~~--l~~~~R~~~~~~l~~lL~pgG~~~l~ 154 (218)
T PRK13255 113 ----DLADVDAVYDRAALIA--LPEEMRERYVQQLAALLPAGCRGLLV 154 (218)
T ss_pred ----cCCCeeEEEehHhHhh--CCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 1258999999888886 57888999999999999999975543
No 71
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.44 E-value=1.3e-12 Score=111.04 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=83.7
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+|||+|||+|..+..+...+. +++|+|+|+++++.|+++...++. .++++.+|+.... .++||+|+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--------~~~fD~Vi 87 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--------RGKFDVIL 87 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--------CCcccEEE
Confidence 557899999999988777776655 899999999999999999876542 4788889976532 35899999
Q ss_pred eccchhhhcC-----------------CHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 111 CFQHLQMCFE-----------------TEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 111 ~~~~lh~~~~-----------------~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
++..+|..-. .....+.+++++.++|+|||.+++..+..
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 9877654211 12235788999999999999998875443
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.43 E-value=2.8e-12 Score=111.44 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=78.9
Q ss_pred CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
.++.+|||+|||+|..+..++.. ...+|+|+|+++++++.|+++....+...+++++.+|...... ...+||
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~------~~~~fD 144 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE------KHAPFD 144 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc------cCCCcc
Confidence 47789999999999877666553 2458999999999999999988766543458899999875332 346899
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
+|++..++++ +.+++.+.|+|||++++..
T Consensus 145 ~Ii~~~~~~~----------~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 145 AIIVTAAAST----------IPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEEEccCcch----------hhHHHHHhcCcCcEEEEEE
Confidence 9999987654 1246778999999998764
No 73
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.43 E-value=8.3e-13 Score=113.77 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=87.7
Q ss_pred CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
....+|||||||+|..+..++.. +..+++|+|+++.+++.|+++....+.. ++.++++|+.... .... +++++|.
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~--~~~~-~~~~~d~ 90 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELL--DKFF-PDGSLSK 90 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHH--HhhC-CCCceeE
Confidence 35679999999999888877765 4568999999999999999988765433 5899999986522 1110 3468999
Q ss_pred EEeccchhhhcCCH-----HHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467 109 VCCFQHLQMCFETE-----ERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (312)
Q Consensus 109 V~~~~~lh~~~~~~-----~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l 152 (312)
|++.+.-++ .... -....+++.++++|||||.+++.+.+....
T Consensus 91 v~~~~pdpw-~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~ 138 (194)
T TIGR00091 91 VFLNFPDPW-PKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLF 138 (194)
T ss_pred EEEECCCcC-CCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence 998876443 1100 012578999999999999999988776543
No 74
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.42 E-value=2.8e-13 Score=115.11 Aligned_cols=102 Identities=28% Similarity=0.313 Sum_probs=86.8
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
+..+|.|||||+|.....+.+. +...++|+|.|++||+.|+.+..+ ++|..+|+.... +...+|++
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~------~~f~~aDl~~w~-------p~~~~dll 96 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPD------ATFEEADLRTWK-------PEQPTDLL 96 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCC------CceecccHhhcC-------CCCccchh
Confidence 5679999999999777666655 778999999999999999888754 789999998754 46789999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
+++.++|+. .+-..+|..+...|.|||.+-+..||.
T Consensus 97 faNAvlqWl----pdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 97 FANAVLQWL----PDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhhc----cccHHHHHHHHHhhCCCceEEEECCCc
Confidence 999999983 445667888888999999999999987
No 75
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.42 E-value=3.1e-12 Score=119.27 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=86.2
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
...+|||+|||+|.....+.+. +..+++++|+|+.|++.|+++.+.++. ..+++..|+... ..++||+|
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l--~~~~~~~D~~~~--------~~~~fDlI 265 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL--EGEVFASNVFSD--------IKGRFDMI 265 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--CCEEEEcccccc--------cCCCccEE
Confidence 3468999999999777766655 345899999999999999999887653 356777787542 24789999
Q ss_pred EeccchhhhcCC-HHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 110 CCFQHLQMCFET-EERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 110 ~~~~~lh~~~~~-~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
+|+..+|+.... ....+.+++++.++|||||.+++....
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 999999874433 566789999999999999999988544
No 76
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.41 E-value=7e-12 Score=107.27 Aligned_cols=102 Identities=11% Similarity=0.040 Sum_probs=80.3
Q ss_pred CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++....+. .+++++++|+.. .+ .++||+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~-~~-------~~~~D~ 100 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPI-EL-------PGKADA 100 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchh-hc-------CcCCCE
Confidence 47789999999999877777665 346899999999999999998876543 247888888632 22 357999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
|++....++ ...+++.+.++|+|||++++..+
T Consensus 101 v~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 101 IFIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred EEECCCccC-------HHHHHHHHHHhcCCCeEEEEEEe
Confidence 998775544 56688999999999999988754
No 77
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.41 E-value=3.1e-12 Score=114.58 Aligned_cols=102 Identities=20% Similarity=0.201 Sum_probs=76.2
Q ss_pred HhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 27 IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 27 ~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
....++.+|||+|||+|..+..+.+.+..+++|+|+|+.+++.|+++...++....+.+.. .+.+|
T Consensus 115 ~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~--------------~~~~f 180 (250)
T PRK00517 115 KLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQ--------------GDLKA 180 (250)
T ss_pred hhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc--------------CCCCc
Confidence 3456789999999999977666655566679999999999999999987765321122111 12379
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
|+|+++...+ ....+++.+.++|||||+++++....
T Consensus 181 D~Vvani~~~-------~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 181 DVIVANILAN-------PLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred CEEEEcCcHH-------HHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 9999876433 36778999999999999999985443
No 78
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.40 E-value=2.2e-12 Score=125.82 Aligned_cols=105 Identities=19% Similarity=0.196 Sum_probs=83.8
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+|||||||+|..+..++.. ..+++|+|+|++|++.+++.... ..++.++++|+....+. .++++||+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~~---~~~i~~~~~d~~~~~~~----~~~~~fD~I~ 108 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESINGH---YKNVKFMCADVTSPDLN----ISDGSVDLIF 108 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhcc---CCceEEEEecccccccC----CCCCCEEEEe
Confidence 5679999999999888877665 45899999999999987664322 12488999998643221 1457899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|.+++|+ .+.+....+++++.++|||||++++.
T Consensus 109 ~~~~l~~--l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 109 SNWLLMY--LSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred hhhhHHh--CCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9999998 45566889999999999999999886
No 79
>PRK14967 putative methyltransferase; Provisional
Probab=99.40 E-value=6.6e-12 Score=110.50 Aligned_cols=112 Identities=19% Similarity=0.140 Sum_probs=84.3
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
..++.+|||+|||+|..+..++..+..+++|+|+|+.+++.|+++....+. ++.++++|+... + ++++||+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~------~~~~fD~ 104 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-V------EFRPFDV 104 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-c------cCCCeeE
Confidence 457789999999999877777665556999999999999999998876542 478888887652 2 3578999
Q ss_pred EEeccchhhhc-----------------CCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 109 VCCFQHLQMCF-----------------ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 109 V~~~~~lh~~~-----------------~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
|+++...+... +.......+++.+.++|||||++++..++.
T Consensus 105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 99975432210 112235778999999999999999875543
No 80
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.39 E-value=1.1e-11 Score=107.03 Aligned_cols=120 Identities=12% Similarity=0.042 Sum_probs=88.3
Q ss_pred HHHHHHHh-cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 021467 21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET 97 (312)
Q Consensus 21 k~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~ 97 (312)
+...+.+. ..++.+|||+|||+|..+..++.. +..+|+++|+++.+++.|+++.+..+...++.++.+|..+..
T Consensus 29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l--- 105 (198)
T PRK00377 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL--- 105 (198)
T ss_pred HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH---
Confidence 34444433 347889999999999877776553 346899999999999999999877653345788888875421
Q ss_pred hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467 98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (312)
Q Consensus 98 ~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l 152 (312)
+...+.||+|++.... .....+++.+.++|||||++++..+..+.+
T Consensus 106 --~~~~~~~D~V~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 151 (198)
T PRK00377 106 --FTINEKFDRIFIGGGS-------EKLKEIISASWEIIKKGGRIVIDAILLETV 151 (198)
T ss_pred --hhcCCCCCEEEECCCc-------ccHHHHHHHHHHHcCCCcEEEEEeecHHHH
Confidence 1123689999986532 236778999999999999999877766544
No 81
>PRK04266 fibrillarin; Provisional
Probab=99.37 E-value=7.7e-12 Score=110.10 Aligned_cols=108 Identities=17% Similarity=0.094 Sum_probs=79.0
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
+.++.+|||+|||+|..+..++.. +...|+|+|+++.|++.+.++.+.. .++.++.+|+........ ...+||
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~---l~~~~D 143 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAH---VVEKVD 143 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhh---ccccCC
Confidence 348899999999999877777654 3358999999999999887776542 237888999875211011 135699
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
+|++.. ........+++++.++|||||.++++++-
T Consensus 144 ~i~~d~------~~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 144 VIYQDV------AQPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred EEEECC------CChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 998543 22334566799999999999999998553
No 82
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.37 E-value=3.7e-12 Score=115.88 Aligned_cols=106 Identities=25% Similarity=0.320 Sum_probs=81.6
Q ss_pred HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467 23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK 102 (312)
Q Consensus 23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~ 102 (312)
.++.++..++.+|||+|||+|-.+...++.+..+|+|+|+++.+++.|+++...|+...++... . ..+. .
T Consensus 153 ~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~--~~~~------~ 222 (295)
T PF06325_consen 153 ELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L--SEDL------V 222 (295)
T ss_dssp HHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C--TSCT------C
T ss_pred HHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E--eccc------c
Confidence 4556777889999999999997777767778889999999999999999999988755444432 1 1122 3
Q ss_pred CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
..+||+|+++-..+- +..++..+.++|+|||+++++
T Consensus 223 ~~~~dlvvANI~~~v-------L~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 223 EGKFDLVVANILADV-------LLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp CS-EEEEEEES-HHH-------HHHHHHHCHHHEEEEEEEEEE
T ss_pred cccCCEEEECCCHHH-------HHHHHHHHHHhhCCCCEEEEc
Confidence 489999998775444 778899999999999999988
No 83
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.37 E-value=1.2e-11 Score=111.09 Aligned_cols=103 Identities=20% Similarity=0.165 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHH--HHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD--TWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~--r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.+.+|||||||+|..+..++.++...|+|+|.+....-+... ++-... .......+.-..+ + ..+.||+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~----~~~~~lplgvE~L----p-~~~~FDt 185 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD----PPVFELPLGVEDL----P-NLGAFDT 185 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC----ccEEEcCcchhhc----c-ccCCcCE
Confidence 688999999999999999999999999999999988877443 333211 1122222222222 1 1478999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
|+|..++-| ..+.-..|+.+++.|+|||.+++-+
T Consensus 186 VF~MGVLYH----rr~Pl~~L~~Lk~~L~~gGeLvLET 219 (315)
T PF08003_consen 186 VFSMGVLYH----RRSPLDHLKQLKDSLRPGGELVLET 219 (315)
T ss_pred EEEeeehhc----cCCHHHHHHHHHHhhCCCCEEEEEE
Confidence 999998766 5667888999999999999999763
No 84
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.37 E-value=8.5e-13 Score=110.23 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=65.3
Q ss_pred EEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhc
Q 021467 58 IGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSL 135 (312)
Q Consensus 58 ~giDis~~~i~~a~~r~~~~~--~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~ 135 (312)
+|+|+|++||+.|+++.+... ...+++++++|+.+.++ ++++||+|++.+++|+. .+...++++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~------~~~~fD~v~~~~~l~~~----~d~~~~l~ei~rv 70 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF------DDCEFDAVTMGYGLRNV----VDRLRAMKEMYRV 70 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC------CCCCeeEEEecchhhcC----CCHHHHHHHHHHH
Confidence 489999999999988765321 12348999999988776 67899999999999983 4578999999999
Q ss_pred cCCCcEEEEEe
Q 021467 136 LKPGGYFLGIT 146 (312)
Q Consensus 136 LkpGG~~i~~~ 146 (312)
|||||.|++..
T Consensus 71 LkpGG~l~i~d 81 (160)
T PLN02232 71 LKPGSRVSILD 81 (160)
T ss_pred cCcCeEEEEEE
Confidence 99999998773
No 85
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.36 E-value=3.9e-12 Score=112.04 Aligned_cols=134 Identities=17% Similarity=0.131 Sum_probs=100.9
Q ss_pred HHHHHHHHhcC--CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467 20 AKTALIKIYSH--PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (312)
Q Consensus 20 vk~~li~~~~~--~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~ 96 (312)
+-++|+..+++ ...+|||||||+|.....++.. ...+++|||+++++.+.|++..+.++...+++++++|+......
T Consensus 31 ~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 31 TDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred cHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 56788888876 4679999999999666666555 44799999999999999999999888788899999998764321
Q ss_pred hhhhhcCCceeEEEeccchhhhc--------------CCHHHHHHHHHHHHhccCCCcEEEEEecCh--hHHHHHHH
Q 021467 97 TQMQEKANQADLVCCFQHLQMCF--------------ETEERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ 157 (312)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~lh~~~--------------~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~--~~l~~~~~ 157 (312)
. ...+||+|+|+-...-.- +..-..+.+++...++|||||.+.+..|.. ..+...++
T Consensus 111 --~--~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~ 183 (248)
T COG4123 111 --L--VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLK 183 (248)
T ss_pred --c--cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHH
Confidence 1 235799999976532210 112335889999999999999999987665 23444443
No 86
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.36 E-value=8.6e-12 Score=116.08 Aligned_cols=120 Identities=18% Similarity=0.108 Sum_probs=91.5
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.+++.+|||+|||+|+.+...... ..+++|+|+++.|++.|+.+.+..+... +.+.++|+.+.++ .+++||+
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~------~~~~~D~ 251 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPL------SSESVDA 251 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCc------ccCCCCE
Confidence 457889999999999887765544 4589999999999999999987765433 6888999987655 4578999
Q ss_pred EEeccchhhh--c---CCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467 109 VCCFQHLQMC--F---ETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (312)
Q Consensus 109 V~~~~~lh~~--~---~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~ 156 (312)
|++....... . ...+....+++++.++|||||++++.+|+...+.+.+
T Consensus 252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~ 304 (329)
T TIGR01177 252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLA 304 (329)
T ss_pred EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHH
Confidence 9996432110 0 1123468899999999999999999988875554433
No 87
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=5.4e-12 Score=113.96 Aligned_cols=110 Identities=16% Similarity=0.185 Sum_probs=82.9
Q ss_pred HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc
Q 021467 23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK 102 (312)
Q Consensus 23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~ 102 (312)
..+.++..++.+|||+|||+|-.+...++.+..+++|+|+++.+++.|+++...|+....+.....+..... .
T Consensus 154 ~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-------~ 226 (300)
T COG2264 154 EALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-------E 226 (300)
T ss_pred HHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-------c
Confidence 345666778999999999999777777777888999999999999999999988763211111111111110 2
Q ss_pred CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
.++||+|+++-.-+- ...+...+.+.|||||+++.+.
T Consensus 227 ~~~~DvIVANILA~v-------l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 227 NGPFDVIVANILAEV-------LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cCcccEEEehhhHHH-------HHHHHHHHHHHcCCCceEEEEe
Confidence 369999998874333 6788999999999999999984
No 88
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.35 E-value=1.3e-11 Score=108.09 Aligned_cols=113 Identities=11% Similarity=0.005 Sum_probs=89.1
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-----------CCCceEEEEEcCCCCCchhhh
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-----------RKNFIAEFFEADPCAENFETQ 98 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~-----------~~~~~~~f~~~D~~~~~~~~~ 98 (312)
.++.+||+.|||+|.++..++..+. +|+|+|+|+.+|+.+.+..... -....++++++|+++.+...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~- 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA- 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc-
Confidence 4678999999999999998887776 7999999999999986632100 01235899999998864310
Q ss_pred hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
...+.||+|.-..+++. ...+...+..+.+.++|+|||.+++.+.+
T Consensus 120 --~~~~~fD~VyDra~~~A--lpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 120 --NNLPVFDIWYDRGAYIA--LPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred --cccCCcCeeeeehhHhc--CCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 02368999999888886 57888999999999999999999988543
No 89
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.35 E-value=1.6e-11 Score=107.05 Aligned_cols=111 Identities=19% Similarity=0.114 Sum_probs=78.3
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCC
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN 104 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~ 104 (312)
+.++.+|||||||+|..+..+++. ....|+|+|+++ |. .. ..+.++++|+.+......+. ...+
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~------~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PI------VGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CC------CCcEEEecCCCChHHHHHHHHHhCCC
Confidence 467889999999999877766665 235899999998 21 11 12889999998754211110 1357
Q ss_pred ceeEEEeccchhhhcCCH--H------HHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467 105 QADLVCCFQHLQMCFETE--E------RARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (312)
Q Consensus 105 ~fD~V~~~~~lh~~~~~~--~------~~~~~l~~i~~~LkpGG~~i~~~p~~~~l 152 (312)
+||+|+|..+.++. .+. + ....+|+++.++|||||.|++.+...+.+
T Consensus 117 ~~D~V~S~~~~~~~-g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~ 171 (209)
T PRK11188 117 KVQVVMSDMAPNMS-GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGF 171 (209)
T ss_pred CCCEEecCCCCccC-CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCH
Confidence 89999998766552 211 1 12578999999999999999976665443
No 90
>PRK14968 putative methyltransferase; Provisional
Probab=99.34 E-value=2.5e-11 Score=103.41 Aligned_cols=112 Identities=18% Similarity=0.190 Sum_probs=84.9
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCce-EEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~-~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.++.+|||+|||+|..+..++.. ..+++|+|+|+++++.++++...++...+ +.+.++|+.+. + .+.+||+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~~d~ 93 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-F------RGDKFDV 93 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-c------cccCceE
Confidence 46789999999999888877766 56999999999999999998876553322 77888887653 2 2358999
Q ss_pred EEeccchhh-----------------hcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 109 VCCFQHLQM-----------------CFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 109 V~~~~~lh~-----------------~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
|++...+.. ...+......+++++.++|||||.+++..++.
T Consensus 94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~ 151 (188)
T PRK14968 94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL 151 (188)
T ss_pred EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc
Confidence 998654211 11124456788999999999999999887654
No 91
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.34 E-value=7.3e-12 Score=108.25 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=111.3
Q ss_pred EEEEECCCCCccHHHHHHcC---CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 34 TVCDLYCGAGVDVDKWETAL---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 34 ~VLDlGCG~G~~l~~~~~~~---~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
+||++|||.|..+..+++.. .-.++++|.|+.+|+..+++..... .++.-.+.|++...+...+ ..+++|+|+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~--~~~svD~it 149 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPP--EEGSVDIIT 149 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCC--CcCccceEE
Confidence 79999999999888887752 2489999999999999888754432 2355566777765532222 468999999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEecc
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEV 190 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~ 190 (312)
+.|++-. .+.++...+++|++++|||||.+++---....+-+ ++ +. + +..+ +
T Consensus 150 ~IFvLSA--i~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaq-lR-----F~-~---------~~~i-----~----- 201 (264)
T KOG2361|consen 150 LIFVLSA--IHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQ-LR-----FK-K---------GQCI-----S----- 201 (264)
T ss_pred EEEEEec--cChHHHHHHHHHHHHHhCCCcEEEEeecccchHHH-Hh-----cc-C---------Ccee-----e-----
Confidence 9999865 77999999999999999999999987333322211 00 00 0 0000 0
Q ss_pred cCCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEec
Q 021467 191 EEEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQ 238 (312)
Q Consensus 191 ~~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~ 238 (312)
-+|+..++.+ +-|..+-+.|..++.++||+.++..
T Consensus 202 -----------~nfYVRgDGT--~~YfF~~eeL~~~f~~agf~~~~~~ 236 (264)
T KOG2361|consen 202 -----------ENFYVRGDGT--RAYFFTEEELDELFTKAGFEEVQLE 236 (264)
T ss_pred -----------cceEEccCCc--eeeeccHHHHHHHHHhcccchhccc
Confidence 1122223332 2377788999999999999988754
No 92
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.34 E-value=1.9e-11 Score=106.85 Aligned_cols=101 Identities=13% Similarity=0.029 Sum_probs=78.5
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
..++.+|||+|||+|..+..++.. ...+|+|+|+++++++.|+++++..+. .++.++++|...... ...+|
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~------~~~~f 146 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYE------ENAPY 146 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCC------cCCCc
Confidence 357899999999999877666554 235999999999999999999876543 248999999876433 35789
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
|+|++..+.+. ..+.+.+.|||||++++..
T Consensus 147 D~I~~~~~~~~----------~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 147 DRIYVTAAGPD----------IPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CEEEECCCccc----------chHHHHHhhCCCcEEEEEE
Confidence 99998876543 1235667899999998864
No 93
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.34 E-value=1.9e-11 Score=106.95 Aligned_cols=102 Identities=12% Similarity=0.016 Sum_probs=78.9
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
..++.+|||+|||+|..+..++... ..+|+|+|+++++++.|+++++..+. .+++++++|...... ...+|
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~------~~~~f 147 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWE------PLAPY 147 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCc------ccCCC
Confidence 3578899999999998877666542 24699999999999999999887653 348899999865322 24689
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
|+|++..+.+. ....+.+.|+|||++++...
T Consensus 148 D~Ii~~~~~~~----------~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 148 DRIYVTAAGPK----------IPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred CEEEEcCCccc----------ccHHHHHhcCcCcEEEEEEc
Confidence 99998875544 23557889999999998643
No 94
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.31 E-value=7.7e-11 Score=107.43 Aligned_cols=113 Identities=18% Similarity=0.204 Sum_probs=85.2
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
+..+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++...++...++.++++|+.+. + +..+||+|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~------~~~~fD~I 193 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-L------PGRKYDLI 193 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-c------CCCCccEE
Confidence 4579999999999887777665 44699999999999999999988766444689999998642 2 24579999
Q ss_pred Eeccch-------------hh----hc----CCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467 110 CCFQHL-------------QM----CF----ETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (312)
Q Consensus 110 ~~~~~l-------------h~----~~----~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~ 150 (312)
+++-.. ++ ++ ...+..+.+++++.++|+|||.+++.+....
T Consensus 194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~ 255 (284)
T TIGR03533 194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM 255 (284)
T ss_pred EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence 986321 11 00 1123457889999999999999999877543
No 95
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.31 E-value=2.4e-11 Score=104.08 Aligned_cols=117 Identities=16% Similarity=0.133 Sum_probs=78.6
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCC
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKAN 104 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~ 104 (312)
+.++.+|||+|||+|+.+..+... +..+++|+|+|+.+ . .. .+.++++|+.+......+. .+.+
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~--~~----~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------P--IE----NVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------c--CC----CceEEEeeCCChhHHHHHHHHhCCC
Confidence 357899999999999877766654 34589999999864 1 11 2778889987644221111 1356
Q ss_pred ceeEEEeccchhh----hc---CCHHHHHHHHHHHHhccCCCcEEEEEecCh---hHHHHHHH
Q 021467 105 QADLVCCFQHLQM----CF---ETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQ 157 (312)
Q Consensus 105 ~fD~V~~~~~lh~----~~---~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~---~~l~~~~~ 157 (312)
+||+|++..+.|+ .. .+.+..+.++.++.++|+|||++++..... ..++..++
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~ 160 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELR 160 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHH
Confidence 8999998654321 11 112345789999999999999999975444 34444443
No 96
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.29 E-value=7.4e-11 Score=105.20 Aligned_cols=111 Identities=21% Similarity=0.211 Sum_probs=83.4
Q ss_pred CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
..+.+|||+|||+|..+..++.. +..+++|+|+++.+++.|+++....+.. ++.++++|+.+ .+ +.++||+
T Consensus 86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~-~~------~~~~fD~ 157 (251)
T TIGR03534 86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE-PL------PGGKFDL 157 (251)
T ss_pred cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc-cC------cCCceeE
Confidence 34569999999999888877765 4569999999999999999988765532 48899999865 22 3578999
Q ss_pred EEeccchhh------hc------C----------CHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 109 VCCFQHLQM------CF------E----------TEERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 109 V~~~~~lh~------~~------~----------~~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
|+++...+. .. + .......+++++.++|+|||.+++....
T Consensus 158 Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 158 IVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred EEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 999654321 00 0 0122357899999999999999987543
No 97
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.28 E-value=4.4e-11 Score=112.16 Aligned_cols=117 Identities=15% Similarity=0.082 Sum_probs=89.0
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.+..+||||||+|..+..++.. +...++|+|+++.+++.|.++....+. .++.++++|+.... ..+ +++++|.|
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll--~~~--~~~s~D~I 196 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLL--ELL--PSNSVEKI 196 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhh--hhC--CCCceeEE
Confidence 3568999999999988888776 456899999999999999999877653 34889999985421 111 56899999
Q ss_pred EeccchhhhcCCHH---HHHHHHHHHHhccCCCcEEEEEecChhHHH
Q 021467 110 CCFQHLQMCFETEE---RARRLLQNVSSLLKPGGYFLGITPDSSTIW 153 (312)
Q Consensus 110 ~~~~~lh~~~~~~~---~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~ 153 (312)
++.+...+ ..... ....++..++++|+|||.+.+.+-+.+...
T Consensus 197 ~lnFPdPW-~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~ 242 (390)
T PRK14121 197 FVHFPVPW-DKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFE 242 (390)
T ss_pred EEeCCCCc-cccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHH
Confidence 99886443 11111 126899999999999999999887775443
No 98
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.28 E-value=1.2e-10 Score=107.19 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=83.6
Q ss_pred CEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 33 ~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+.++...+++++++|+.+. + +.++||+|++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l------~~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-L------PGRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-C------CCCCccEEEE
Confidence 68999999999877777655 45699999999999999999988766545689999997542 2 2357999998
Q ss_pred ccch-------------hh----hc----CCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 112 FQHL-------------QM----CF----ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 112 ~~~l-------------h~----~~----~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
+-.. ++ ++ ...+..+.+++++.++|+|||.+++.+...
T Consensus 208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS 266 (307)
T ss_pred CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 6321 11 00 012345788999999999999999986654
No 99
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.28 E-value=6.9e-12 Score=108.42 Aligned_cols=114 Identities=13% Similarity=0.122 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 021467 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET 97 (312)
Q Consensus 18 n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~ 97 (312)
.|++... .+......++|+|||+|..+.-. .....+|+|+|+|+.||+.|++..+......+..+...++.. +
T Consensus 22 dw~~~ia--~~~~~h~~a~DvG~G~Gqa~~~i-ae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~--L-- 94 (261)
T KOG3010|consen 22 DWFKKIA--SRTEGHRLAWDVGTGNGQAARGI-AEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVD--L-- 94 (261)
T ss_pred HHHHHHH--hhCCCcceEEEeccCCCcchHHH-HHhhhhheeecCCHHHHHHhhcCCCcccccCCcccccccccc--c--
Confidence 5555432 33333348999999999444444 445779999999999999998876543222223333222222 2
Q ss_pred hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCc-EEEEE
Q 021467 98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGI 145 (312)
Q Consensus 98 ~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG-~~i~~ 145 (312)
...+++.|+|+|..++|+ |. ++.+.+++.++||+.| .+.+-
T Consensus 95 --~g~e~SVDlI~~Aqa~HW-Fd----le~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 95 --LGGEESVDLITAAQAVHW-FD----LERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred --cCCCcceeeehhhhhHHh-hc----hHHHHHHHHHHcCCCCCEEEEE
Confidence 113689999999999998 55 8899999999999877 54443
No 100
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.27 E-value=6.6e-11 Score=89.10 Aligned_cols=103 Identities=24% Similarity=0.262 Sum_probs=81.2
Q ss_pred EEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 021467 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 34 ~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
+|||+|||.|..+..+......+++++|+++.+++.+++..... ...++.++..|+.+... ...++||+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPP-----EADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhcc-----ccCCceEEEEEcc
Confidence 58999999998888777656679999999999999988543322 22347888888876432 0247899999999
Q ss_pred chhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 114 ~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
.+++. .+....+++.+.+.|+|||.++++
T Consensus 75 ~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 76652 667899999999999999999876
No 101
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.26 E-value=1.1e-10 Score=101.97 Aligned_cols=100 Identities=12% Similarity=0.056 Sum_probs=77.2
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.++.+|||+|||+|..+..+.... .+++++|+++++++.|+++++..+.. ++++..+|...... ..++||+|
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~------~~~~fD~I 148 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWP------AYAPFDRI 148 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCC------cCCCcCEE
Confidence 477899999999997666554443 48999999999999999998765432 38899999755321 24789999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
++..++++ +.+.+.+.|+|||.+++...
T Consensus 149 ~~~~~~~~----------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 149 LVTAAAPE----------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EEccCchh----------hhHHHHHhcCCCcEEEEEEc
Confidence 99876554 23457789999999998865
No 102
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.26 E-value=1.3e-10 Score=100.21 Aligned_cols=110 Identities=20% Similarity=0.216 Sum_probs=81.2
Q ss_pred CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.++.+|||+|||+|..+..++.. +..+++|+|+|+++++.|+++.+..+. .+++++.+|+... + .. ....+|.
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~-~-~~---~~~~~d~ 112 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPEC-L-AQ---LAPAPDR 112 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHH-H-hh---CCCCCCE
Confidence 47789999999999877766544 446999999999999999998876543 2488899887541 1 00 1234566
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHH
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~ 153 (312)
++... ......+++++.++|+|||.+++..++.+.+.
T Consensus 113 v~~~~--------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~ 149 (196)
T PRK07402 113 VCIEG--------GRPIKEILQAVWQYLKPGGRLVATASSLEGLY 149 (196)
T ss_pred EEEEC--------CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHH
Confidence 65422 12357889999999999999999988876543
No 103
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.4e-10 Score=104.27 Aligned_cols=115 Identities=19% Similarity=0.188 Sum_probs=86.5
Q ss_pred HHHHhcC-CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh
Q 021467 24 LIKIYSH-PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE 101 (312)
Q Consensus 24 li~~~~~-~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~ 101 (312)
|++.+.. .+.+|||+|||.|.....+++. +..+++.+|++..+|+.|+++...++.... .++..|+.+.-
T Consensus 150 Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v------- 221 (300)
T COG2813 150 LLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV------- 221 (300)
T ss_pred HHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc-------
Confidence 4444432 3559999999999766666655 457999999999999999999988764322 56677766532
Q ss_pred cCCceeEEEeccchhhhcCCH-HHHHHHHHHHHhccCCCcEEEEEec
Q 021467 102 KANQADLVCCFQHLQMCFETE-ERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 102 ~~~~fD~V~~~~~lh~~~~~~-~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
.++||+|+|+-.+|.-.... .-..+++....++|++||.+.+..-
T Consensus 222 -~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 222 -EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred -cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 24999999999998632221 2345899999999999999998854
No 104
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.24 E-value=2e-10 Score=104.80 Aligned_cols=110 Identities=15% Similarity=0.283 Sum_probs=83.7
Q ss_pred CEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 33 ~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
.+|||+|||+|..+..++.. +..+++|+|+|+++++.|+++....+...++.++++|+.+. + +..+||+|++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~-~------~~~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP-L------AGQKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc-C------cCCCccEEEE
Confidence 69999999999877777665 34699999999999999999987765444589999998652 2 2347999998
Q ss_pred ccc-------------hhh----hc----CCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 112 FQH-------------LQM----CF----ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 112 ~~~-------------lh~----~~----~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
+-. .+| ++ ......+.++.++.++|+|||++++.+.+.
T Consensus 189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 632 111 00 112357889999999999999999887654
No 105
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.22 E-value=4.7e-10 Score=96.03 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=84.5
Q ss_pred HHHhcCCCC-EEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh--hh
Q 021467 25 IKIYSHPYV-TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ--MQ 100 (312)
Q Consensus 25 i~~~~~~~~-~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~--~~ 100 (312)
++.++++.. +|||||||+|..+..++.+ +.....-.|+++..+...+......+...-..-+..|+........ -.
T Consensus 18 L~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~ 97 (204)
T PF06080_consen 18 LKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAP 97 (204)
T ss_pred HHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccc
Confidence 344445444 5999999999999888776 4456778899888876655554443221112234566665422110 00
Q ss_pred hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
....+||+|+|..++|. .+.+..+.+++.+.++|++||.|++-.|
T Consensus 98 ~~~~~~D~i~~~N~lHI--~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 98 LSPESFDAIFCINMLHI--SPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred cCCCCcceeeehhHHHh--cCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 12468999999999998 7788899999999999999999998744
No 106
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.21 E-value=1.1e-11 Score=106.21 Aligned_cols=141 Identities=18% Similarity=0.261 Sum_probs=98.2
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
-.++|||||||| .+..-++....+++|+|||..|++.|.++--- -...++|+.. |... ..+.+||+|++
T Consensus 126 F~~~lDLGCGTG-L~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y------D~L~~Aea~~--Fl~~--~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTG-LTGEALRDMADRLTGVDISENMLAKAHEKGLY------DTLYVAEAVL--FLED--LTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcC-cccHhHHHHHhhccCCchhHHHHHHHHhccch------HHHHHHHHHH--Hhhh--ccCCcccchhh
Confidence 468999999999 44333444556899999999999999886321 1123333321 1110 14589999999
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhHHhhhcCCCCCCCCCCCCcccCceEEEEeccc
Q 021467 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNVEAYHNRSSSMKPNLVPNCIRSESYVITFEVE 191 (312)
Q Consensus 112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~gn~~~~~~y~i~f~~~ 191 (312)
..++-| ...++.++--+...|+|||.|.+++-+..
T Consensus 195 aDVl~Y----lG~Le~~~~~aa~~L~~gGlfaFSvE~l~----------------------------------------- 229 (287)
T COG4976 195 ADVLPY----LGALEGLFAGAAGLLAPGGLFAFSVETLP----------------------------------------- 229 (287)
T ss_pred hhHHHh----hcchhhHHHHHHHhcCCCceEEEEecccC-----------------------------------------
Confidence 999998 56688999999999999999999843320
Q ss_pred CCCCCcceeeeEEeEcccccCCCccccchHHHHHHHHHcCcEEEEecCc
Q 021467 192 EEKFPLFGKKYQLKFANDISAETQCLVHFPSLIRLAREAGLEYVEIQNL 240 (312)
Q Consensus 192 ~~~~~~~G~~Y~f~l~~~~~~~~e~lv~~~~l~~l~~e~Gl~lv~~~~f 240 (312)
.+|. |.|..+ ..|-.+-+.+.++++..||+++....-
T Consensus 230 -----~~~~---f~l~ps----~RyAH~~~YVr~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 230 -----DDGG---FVLGPS----QRYAHSESYVRALLAASGLEVIAIEDT 266 (287)
T ss_pred -----CCCC---eecchh----hhhccchHHHHHHHHhcCceEEEeecc
Confidence 0010 112221 246677788999999999999987644
No 107
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.20 E-value=3.2e-10 Score=96.83 Aligned_cols=112 Identities=19% Similarity=0.226 Sum_probs=81.3
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-CchhhhhhhcCCceeEEE
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQEKANQADLVC 110 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~-~~~~~~~~~~~~~fD~V~ 110 (312)
..-|||||||+|- ....+.......+|+|||+.|++.|.++--+ ..++.+|+-. .++ .+++||.|+
T Consensus 51 ~~~iLDIGCGsGL-Sg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~Glpf------rpGtFDg~I 117 (270)
T KOG1541|consen 51 SGLILDIGCGSGL-SGSVLSDSGHQWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPF------RPGTFDGVI 117 (270)
T ss_pred CcEEEEeccCCCc-chheeccCCceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCC------CCCccceEE
Confidence 5679999999994 4444444446899999999999999974322 3577888764 233 679999998
Q ss_pred eccchhhhcC-------CHHHHHHHHHHHHhccCCCcEEEEEe-cChhHHHHHH
Q 021467 111 CFQHLQMCFE-------TEERARRLLQNVSSLLKPGGYFLGIT-PDSSTIWAKY 156 (312)
Q Consensus 111 ~~~~lh~~~~-------~~~~~~~~l~~i~~~LkpGG~~i~~~-p~~~~l~~~~ 156 (312)
+..++++.+. ....+..++..+..+|++|+..++.+ |..+.-.+.+
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i 171 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMI 171 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHH
Confidence 8777665432 24566788999999999999999984 4444333333
No 108
>PRK04457 spermidine synthase; Provisional
Probab=99.19 E-value=2.7e-10 Score=102.66 Aligned_cols=116 Identities=13% Similarity=0.074 Sum_probs=82.0
Q ss_pred CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
++..+|||||||.|..+..+... +..+++++|+++++++.|++.+.......+++++++|+.+. +.....+||+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~-----l~~~~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY-----IAVHRHSTDV 139 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH-----HHhCCCCCCE
Confidence 45678999999999766666554 45689999999999999999876443334688999997542 1112468999
Q ss_pred EEeccchhh-hcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467 109 VCCFQHLQM-CFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (312)
Q Consensus 109 V~~~~~lh~-~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~ 151 (312)
|++.. .+. .....-....+++++.++|+|||++++...+.+.
T Consensus 140 I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~ 182 (262)
T PRK04457 140 ILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK 182 (262)
T ss_pred EEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch
Confidence 98753 111 0000112378999999999999999987544433
No 109
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.18 E-value=1.2e-10 Score=102.01 Aligned_cols=110 Identities=25% Similarity=0.203 Sum_probs=83.5
Q ss_pred hcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc------C-----CCceEEEEEcCCCCCchh
Q 021467 28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ------R-----KNFIAEFFEADPCAENFE 96 (312)
Q Consensus 28 ~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~------~-----~~~~~~f~~~D~~~~~~~ 96 (312)
...++.+||..|||+|.++..++..+. +|+|+|+|+.+|+++.+..... . ...+++++++|.+..+..
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 345678999999999999988887765 9999999999999985543220 0 112478999999885431
Q ss_pred hhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
..++||+|.=..+++. .+.+......+.+.++|+|||.+++.
T Consensus 113 -----~~g~fD~iyDr~~l~A--lpp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 113 -----DVGKFDLIYDRTFLCA--LPPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp -----CHHSEEEEEECSSTTT--S-GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred -----hcCCceEEEEeccccc--CCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 1258999999888875 56888999999999999999995544
No 110
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.18 E-value=5.1e-10 Score=101.32 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=82.1
Q ss_pred CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.. .....++.++++|+... + ..++||+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~------~~~~fD~ 178 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-L------PGGRFDL 178 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-C------CCCceeE
Confidence 36689999999999887777665 35699999999999999999887 22233589999998552 2 2478999
Q ss_pred EEeccchhh------------------h----cCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 109 VCCFQHLQM------------------C----FETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 109 V~~~~~lh~------------------~----~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
|+++....- + ....+..+.+++++.++|+|||++++.+.
T Consensus 179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 998643210 0 01234467889999999999999998753
No 111
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.17 E-value=1e-09 Score=92.20 Aligned_cols=123 Identities=15% Similarity=0.095 Sum_probs=96.5
Q ss_pred HHHHHHHHHhc-CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467 19 FAKTALIKIYS-HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (312)
Q Consensus 19 ~vk~~li~~~~-~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~ 96 (312)
-|+.+.+.++. .++.+++|+|||+|.....|+.. +..+++++|-++++++..+++.+..+ -.+++.+.+|+-+.-.
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~- 98 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEALP- 98 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHhhc-
Confidence 45555565554 48899999999999999999854 55799999999999999999888766 4558899998755211
Q ss_pred hhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (312)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~ 156 (312)
...++|.|+...+ .. .+.+++.+...|||||++++....-+.+...+
T Consensus 99 -----~~~~~daiFIGGg-~~-------i~~ile~~~~~l~~ggrlV~naitlE~~~~a~ 145 (187)
T COG2242 99 -----DLPSPDAIFIGGG-GN-------IEEILEAAWERLKPGGRLVANAITLETLAKAL 145 (187)
T ss_pred -----CCCCCCEEEECCC-CC-------HHHHHHHHHHHcCcCCeEEEEeecHHHHHHHH
Confidence 1237999999886 33 68889999999999999999977776655444
No 112
>PRK00811 spermidine synthase; Provisional
Probab=99.17 E-value=2.2e-10 Score=104.35 Aligned_cols=113 Identities=12% Similarity=0.060 Sum_probs=82.9
Q ss_pred CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC----CCceEEEEEcCCCCCchhhhhhhcCC
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADPCAENFETQMQEKAN 104 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~----~~~~~~f~~~D~~~~~~~~~~~~~~~ 104 (312)
++..+||+||||.|+.+..+++. +..+|+++|+++++++.|++.+.... ...+++++.+|+... +....+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~-----l~~~~~ 149 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKF-----VAETEN 149 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHH-----HhhCCC
Confidence 35679999999999888887776 56799999999999999999875421 133588999997552 111357
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
+||+|++...-++.....--.+.+++.+.+.|+|||+++....
T Consensus 150 ~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~ 192 (283)
T PRK00811 150 SFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSG 192 (283)
T ss_pred cccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCC
Confidence 8999998654332111111237889999999999999998643
No 113
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.17 E-value=4.9e-10 Score=96.37 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=76.7
Q ss_pred CCcchHHhHHHHHHHHHHHHhc-CCCCEEEEECCCCCccHHHH----HH---c--C-CCeEEEEeCChHHHHHHHHH---
Q 021467 8 RSELTHHRLYEFAKTALIKIYS-HPYVTVCDLYCGAGVDVDKW----ET---A--L-IANYIGIDVATSGIGEARDT--- 73 (312)
Q Consensus 8 R~~~~~~~~~n~vk~~li~~~~-~~~~~VLDlGCG~G~~l~~~----~~---~--~-~~~v~giDis~~~i~~a~~r--- 73 (312)
|.......+.+.+...++.... .+..+|+..||++|.....+ .. . + ..+++|+|||+.+|+.|++-
T Consensus 7 Rd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~ 86 (196)
T PF01739_consen 7 RDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYP 86 (196)
T ss_dssp TTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEE
T ss_pred CCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCC
Confidence 3334444445555543343322 25689999999999643322 12 1 1 24899999999999999871
Q ss_pred --------------HH--hcC--------CCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHH
Q 021467 74 --------------WE--NQR--------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLL 129 (312)
Q Consensus 74 --------------~~--~~~--------~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l 129 (312)
+= ..+ ....+.|.+.|+.+... ..+.||+|+|..++-| -+.+....++
T Consensus 87 ~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~------~~~~fD~I~CRNVlIY--F~~~~~~~vl 158 (196)
T PF01739_consen 87 ERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDP------PFGRFDLIFCRNVLIY--FDPETQQRVL 158 (196)
T ss_dssp GGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGG--S-HHHHHHHH
T ss_pred HHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCc------ccCCccEEEecCEEEE--eCHHHHHHHH
Confidence 10 001 01247899999887222 4589999999999998 5688889999
Q ss_pred HHHHhccCCCcEEEEE
Q 021467 130 QNVSSLLKPGGYFLGI 145 (312)
Q Consensus 130 ~~i~~~LkpGG~~i~~ 145 (312)
+.+++.|+|||+|++.
T Consensus 159 ~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 159 RRLHRSLKPGGYLFLG 174 (196)
T ss_dssp HHHGGGEEEEEEEEE-
T ss_pred HHHHHHcCCCCEEEEe
Confidence 9999999999999976
No 114
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.17 E-value=7.1e-10 Score=104.81 Aligned_cols=112 Identities=17% Similarity=0.103 Sum_probs=82.8
Q ss_pred CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.++.+|||+|||+|..+..++.. +..+++|+|+|++|++.|+++.+..+ .++.++++|+.+..+. ..++||+
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g--~rV~fi~gDl~e~~l~-----~~~~FDL 322 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG--ARVEFAHGSWFDTDMP-----SEGKWDI 322 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEcchhccccc-----cCCCccE
Confidence 35679999999999877776654 55689999999999999999987654 2589999998664321 1357999
Q ss_pred EEeccchhh-----------------hc----CCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 109 VCCFQHLQM-----------------CF----ETEERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 109 V~~~~~lh~-----------------~~----~~~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
|+|+-...- ++ ...+..+.+++.+.+.|+|||.+++.+..
T Consensus 323 IVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~ 383 (423)
T PRK14966 323 IVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF 383 (423)
T ss_pred EEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 999664210 00 11233568888889999999999876544
No 115
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.16 E-value=6.2e-10 Score=95.84 Aligned_cols=106 Identities=15% Similarity=0.124 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
...+.||.|+|-|+.+..++.....+|..+|+.+..++.|++...... ..-.++++..+.+... ..++||+|.
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P------~~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTP------EEGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----------TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccC------CCCcEeEEE
Confidence 357899999999998887777778899999999999999998765421 1225677776654332 357999999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+++-| .+.+++..+|+++...|+|||.+++-
T Consensus 128 ~QW~lgh--LTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 128 IQWCLGH--LTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EES-GGG--S-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ehHhhcc--CCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 9999988 88999999999999999999998874
No 116
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.15 E-value=7.4e-10 Score=99.19 Aligned_cols=110 Identities=20% Similarity=0.259 Sum_probs=80.3
Q ss_pred CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
..+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++.+.++ .+++++|+.+... .. ..++||+|+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~-~~---~~~~fDlVv 158 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALP-TA---LRGRVDILA 158 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcc-hh---cCCCEeEEE
Confidence 458999999999888777654 44589999999999999999987665 4788899765211 00 135799999
Q ss_pred eccchh------h------------hc----CCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 111 CFQHLQ------M------------CF----ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 111 ~~~~lh------~------------~~----~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
++-... . ++ ...+-.+.+++.+.++|+|||.+++.+...
T Consensus 159 ~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 159 ANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred ECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 975421 0 00 012235688999999999999999886544
No 117
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=9.9e-10 Score=105.79 Aligned_cols=111 Identities=17% Similarity=0.143 Sum_probs=82.3
Q ss_pred CCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.++.+|||+|||+|+.+..++... ..+|+|+|+++.+++.++++.+..+. .+.++++|+...... . ..++||.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~--~--~~~~fD~ 316 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQW--W--DGQPFDR 316 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhh--c--ccCCCCE
Confidence 378899999999998887777653 36999999999999999999987653 367899998763210 0 2467999
Q ss_pred EEeccch------------hhhcCCHH-------HHHHHHHHHHhccCCCcEEEEEec
Q 021467 109 VCCFQHL------------QMCFETEE-------RARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 109 V~~~~~l------------h~~~~~~~-------~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
|++.... ++ ..+.+ ..+.++.++.++|||||+++.++.
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~-~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKW-LRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred EEECCCCCcccccccCccccc-cCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 9953321 11 11222 246789999999999999998764
No 118
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.13 E-value=5.6e-10 Score=106.06 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=83.6
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
++.+|||+|||+|+.....+..+..+++++|+|+.+++.|++++..++.. .+++++++|+.+.- ..+....++||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l--~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL--RTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH--HHHHhcCCCCCEE
Confidence 57899999999998776655556669999999999999999999887654 35899999986521 1111124689999
Q ss_pred EeccchhhhcCCH-------HHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 110 CCFQHLQMCFETE-------ERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 110 ~~~~~lh~~~~~~-------~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
++.-..- ..+. .....++..+.++|+|||.++..+.+
T Consensus 298 ilDPP~f--~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 298 VMDPPKF--VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred EECCCCC--CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9975421 0122 23456667788999999999976544
No 119
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.13 E-value=6.4e-10 Score=100.39 Aligned_cols=113 Identities=13% Similarity=0.045 Sum_probs=81.6
Q ss_pred CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
.++.+|||+|||+|+.+..++.. ....|+++|+++.+++.++++.+..+. ..+.+++.|+..... ..+.||
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~------~~~~fD 142 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGA------AVPKFD 142 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhh------hccCCC
Confidence 47889999999999988776654 235899999999999999999987654 247888888754322 235699
Q ss_pred EEEeccc------hhhh-----cCCH-------HHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 108 LVCCFQH------LQMC-----FETE-------ERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 108 ~V~~~~~------lh~~-----~~~~-------~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
+|++... ++.- ..+. .....+|+++.++|||||+++.++..-
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9987321 1100 0111 234679999999999999999875443
No 120
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.13 E-value=9.5e-10 Score=106.47 Aligned_cols=110 Identities=25% Similarity=0.200 Sum_probs=81.9
Q ss_pred CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
++.+|||+|||+|+.+..++.. ...+++|+|+|+.+++.++++.+..+.. .++++++|+.... ++.+||+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-------~~~~fD~ 321 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-------PEEQPDA 321 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-------cCCCCCE
Confidence 6789999999999877666543 3458999999999999999999876542 4889999986632 2468999
Q ss_pred EEeccc------h------hhhcCCHH-------HHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 109 VCCFQH------L------QMCFETEE-------RARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 109 V~~~~~------l------h~~~~~~~-------~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
|++-.. + ++ ..+.+ ....+|.++.++|||||+++..+..-
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~-~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRW-KLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEcCCCCCcchhhcCcchhh-cCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 986211 1 11 11222 24578999999999999999886554
No 121
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.12 E-value=8.1e-10 Score=102.05 Aligned_cols=101 Identities=11% Similarity=0.015 Sum_probs=76.1
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
.+++.+|||+|||+|..+..+++.. ...|+|+|+++++++.|+++.+..+. .++.++++|+..... ...+|
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~------~~~~f 150 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVP------EFAPY 150 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhccc------ccCCc
Confidence 3477899999999998777766542 24799999999999999998876653 347888998765332 23679
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
|+|++..+++. ....+.+.|+|||.+++..
T Consensus 151 D~Ii~~~g~~~----------ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 151 DVIFVTVGVDE----------VPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred cEEEECCchHH----------hHHHHHHhcCCCCEEEEEe
Confidence 99998876554 1234567999999988754
No 122
>PTZ00146 fibrillarin; Provisional
Probab=99.12 E-value=7.5e-10 Score=100.05 Aligned_cols=105 Identities=14% Similarity=0.064 Sum_probs=76.0
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
+.++.+|||||||+|..+..++.. ....|+++|+|+.|++...+..... .++.++..|+..... +.....+|
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~---y~~~~~~v 203 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQK---YRMLVPMV 203 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhh---hhcccCCC
Confidence 458899999999999888777765 2458999999998665544443321 127888999865321 11123579
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|+|++..+ ..++.+.++.++.+.|||||+|++.
T Consensus 204 DvV~~Dva------~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVA------QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCC------CcchHHHHHHHHHHhccCCCEEEEE
Confidence 99988763 2445677888999999999999985
No 123
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.11 E-value=1.1e-09 Score=105.42 Aligned_cols=115 Identities=16% Similarity=0.099 Sum_probs=82.3
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
++.+|||+|||+|+.+..++.. +..+++|+|+++.+++.++++.+..+....+.+..+|....... ....+||.|
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~----~~~~~fD~V 313 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW----AENEQFDRI 313 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc----ccccccCEE
Confidence 6889999999999988877664 44699999999999999999998776443445566666543210 024689999
Q ss_pred Eec------cchhhhc-----CCH-------HHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 110 CCF------QHLQMCF-----ETE-------ERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 110 ~~~------~~lh~~~-----~~~-------~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
++. ..++..- .+. .....+|.++.++|||||+++.++..-
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 863 2233210 111 125789999999999999999885543
No 124
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=1.3e-09 Score=104.94 Aligned_cols=114 Identities=16% Similarity=0.079 Sum_probs=83.8
Q ss_pred CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
.++.+|||+|||+|+.+..++.. +..+++++|+|+.+++.++++.+..+.. .+.++++|+...+.. ..++||
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~-----~~~~fD 309 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEY-----VQDTFD 309 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhh-----hhccCC
Confidence 37789999999999988777654 3569999999999999999998876542 378999998653310 246899
Q ss_pred EEEeccch---hhh--------cCCH-------HHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 108 LVCCFQHL---QMC--------FETE-------ERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 108 ~V~~~~~l---h~~--------~~~~-------~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
.|++.... ... ..+. ....++|.++.+.|||||+++.++..-
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 99873221 110 0111 234778999999999999999886554
No 125
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.10 E-value=1e-09 Score=105.95 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=83.6
Q ss_pred CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
.++.+|||+|||+|+.+..++.. ...+++++|+++.+++.++++.+..+.. .+.++++|+...... .....++||
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~--~~~~~~~fD 327 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLEL--KPQWRGYFD 327 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccc--cccccccCC
Confidence 36889999999999988877664 3458999999999999999999876643 388999998764310 000246899
Q ss_pred EEEecc------chhhhc-----CCHHH-------HHHHHHHHHhccCCCcEEEEEecC
Q 021467 108 LVCCFQ------HLQMCF-----ETEER-------ARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 108 ~V~~~~------~lh~~~-----~~~~~-------~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
.|++.. +++..- .+.++ ...+|.++.++|||||+++.++..
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 999732 222100 11122 578899999999999999877543
No 126
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.10 E-value=9.3e-10 Score=97.54 Aligned_cols=106 Identities=11% Similarity=0.074 Sum_probs=81.5
Q ss_pred CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCCce
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA 106 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~~f 106 (312)
+..+|||+|||+|..+..++.. +..+++++|+++++++.|+++++..+...+++++.+|+.+. + +.+.. +.++|
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-L-~~l~~~~~~~~f 145 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-L-DQLLNNDPKPEF 145 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-H-HHHHhCCCCCCC
Confidence 5679999999999766655543 34699999999999999999999887666799999998652 1 11110 14689
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|+|++... ......++..+.++|+|||.+++.
T Consensus 146 D~VfiDa~-------k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 146 DFAFVDAD-------KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CEEEECCC-------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 99987542 344567889999999999998865
No 127
>PHA03411 putative methyltransferase; Provisional
Probab=99.09 E-value=6.6e-10 Score=99.44 Aligned_cols=102 Identities=14% Similarity=0.023 Sum_probs=75.1
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
...+|||+|||+|.....++.. +..+++|+|+++.|++.|+++.. ++.++++|+.+.. ...+||+|
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~------~v~~v~~D~~e~~-------~~~kFDlI 130 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP------EAEWITSDVFEFE-------SNEKFDVV 130 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc------CCEEEECchhhhc-------ccCCCcEE
Confidence 4579999999999776666554 34699999999999999988753 2788999987643 24689999
Q ss_pred EeccchhhhcCC-HHH---------------HHHHHHHHHhccCCCcEEEEE
Q 021467 110 CCFQHLQMCFET-EER---------------ARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 110 ~~~~~lh~~~~~-~~~---------------~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+++..+++.-.. ... ...++..+..+|+|+|.+++.
T Consensus 131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 998876652111 111 246778888899999977665
No 128
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.08 E-value=8.8e-10 Score=108.05 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=80.9
Q ss_pred CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
..+|||+|||+|..+..++.. +..+++|+|+|+.+++.|+++...++...++.++++|+.+. + ..++||+|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~------~~~~fDlIv 211 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-I------EKQKFDFIV 211 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-C------cCCCccEEE
Confidence 468999999999877766654 55699999999999999999987665444588899987542 2 246899999
Q ss_pred eccchh--------------h----h-cC---CHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 111 CFQHLQ--------------M----C-FE---TEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 111 ~~~~lh--------------~----~-~~---~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
|+-... | + +. ..+..+.+++++.++|+|||.+++.+.
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 954211 0 0 00 123457788999999999999998743
No 129
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.08 E-value=1.9e-09 Score=90.75 Aligned_cols=107 Identities=12% Similarity=0.040 Sum_probs=78.4
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.++.+|||+|||+|..+..++.. ..+++|+|+++.+++.++++.... .+++++++|+.+..+ ++..||.|
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~------~~~~~d~v 81 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDL------PKLQPYKV 81 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCc------cccCCCEE
Confidence 46789999999999888887766 569999999999999999887542 248899999987665 34579999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~ 151 (312)
+++...|. +.+....++++ ..+.++|.+++..-.++.
T Consensus 82 i~n~Py~~---~~~~i~~~l~~--~~~~~~~~l~~q~e~a~r 118 (169)
T smart00650 82 VGNLPYNI---STPILFKLLEE--PPAFRDAVLMVQKEVARR 118 (169)
T ss_pred EECCCccc---HHHHHHHHHhc--CCCcceEEEEEEHHHhHH
Confidence 98877664 23334444432 224588888877443333
No 130
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.08 E-value=1.4e-09 Score=110.61 Aligned_cols=118 Identities=16% Similarity=0.140 Sum_probs=89.0
Q ss_pred HHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhhhcC
Q 021467 25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKA 103 (312)
Q Consensus 25 i~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~~~~~~~~~ 103 (312)
+..+. ++.+|||+|||+|+....++..+..+|+++|+|+.+++.|+++++.++.. .+++++++|+.+. + ....
T Consensus 533 ~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~-l----~~~~ 606 (702)
T PRK11783 533 IGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW-L----KEAR 606 (702)
T ss_pred HHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH-H----HHcC
Confidence 44444 47899999999999888887777778999999999999999999887654 4689999998652 1 1124
Q ss_pred CceeEEEeccchh-------hhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 104 NQADLVCCFQHLQ-------MCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 104 ~~fD~V~~~~~lh-------~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
++||+|++..... ..+........++..+.++|+|||.+++.+..
T Consensus 607 ~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 607 EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 6899999964311 11223455678899999999999999876443
No 131
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.05 E-value=2.7e-09 Score=103.31 Aligned_cols=113 Identities=16% Similarity=0.080 Sum_probs=82.9
Q ss_pred CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
.++.+|||+|||+|+.+..++.. +..+++|+|+++.+++.++++.+..+.. .+.++++|+..... . ..++||
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~--~---~~~~fD 322 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHE--K---FAEKFD 322 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccc--h---hcccCC
Confidence 36789999999999988877764 3569999999999999999998876643 38899999876321 0 126799
Q ss_pred EEEeccchh------h-----hcCCHHH-------HHHHHHHHHhccCCCcEEEEEecC
Q 021467 108 LVCCFQHLQ------M-----CFETEER-------ARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 108 ~V~~~~~lh------~-----~~~~~~~-------~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
+|++..... . ...+..+ ...+++++.++|||||.++.++..
T Consensus 323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 999754211 0 0111222 357899999999999999976543
No 132
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.03 E-value=1.4e-09 Score=94.51 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=73.4
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
++++.+|||||||+|..+..++.. +...|+++|+.+...+.|++++...+. .++.++++|...... ...+|
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~------~~apf 142 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWP------EEAPF 142 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTG------GG-SE
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhccc------cCCCc
Confidence 568999999999999766655543 344799999999999999999987543 258999999755322 34789
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
|.|++..+... . =..+.+.|++||++++-.-
T Consensus 143 D~I~v~~a~~~----i------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 143 DRIIVTAAVPE----I------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred CEEEEeeccch----H------HHHHHHhcCCCcEEEEEEc
Confidence 99999986543 1 2335668999999998644
No 133
>PHA03412 putative methyltransferase; Provisional
Probab=99.01 E-value=2.7e-09 Score=93.45 Aligned_cols=98 Identities=13% Similarity=0.136 Sum_probs=72.0
Q ss_pred CCCEEEEECCCCCccHHHHHHc----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~----~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
.+.+|||+|||+|..+..+++. +..+++|+|+++.+++.|++.... +.++++|+....+ +++|
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~------~~~~~~D~~~~~~-------~~~F 115 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE------ATWINADALTTEF-------DTLF 115 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC------CEEEEcchhcccc-------cCCc
Confidence 3679999999999777766543 345899999999999999977532 7788999875433 4689
Q ss_pred eEEEeccchhhhc--------CCHHHHHHHHHHHHhccCCCcE
Q 021467 107 DLVCCFQHLQMCF--------ETEERARRLLQNVSSLLKPGGY 141 (312)
Q Consensus 107 D~V~~~~~lh~~~--------~~~~~~~~~l~~i~~~LkpGG~ 141 (312)
|+|+++-..+-.- .+..-...++..+.+++++|+.
T Consensus 116 DlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 116 DMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 9999987654210 1123356688888887777775
No 134
>PRK01581 speE spermidine synthase; Validated
Probab=99.00 E-value=1.5e-08 Score=94.17 Aligned_cols=113 Identities=13% Similarity=0.052 Sum_probs=78.9
Q ss_pred CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHH--HH---hcC-CCceEEEEEcCCCCCchhhhhhhc
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDT--WE---NQR-KNFIAEFFEADPCAENFETQMQEK 102 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r--~~---~~~-~~~~~~f~~~D~~~~~~~~~~~~~ 102 (312)
....+||+||||.|..+..+++. +..+++++|+++++++.|++. +. ... ...+++++.+|+... +...
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~f-----L~~~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEF-----LSSP 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHH-----HHhc
Confidence 34579999999999877777765 457999999999999999962 11 111 123588899987652 1113
Q ss_pred CCceeEEEeccchhhh-cCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 103 ANQADLVCCFQHLQMC-FETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 103 ~~~fD~V~~~~~lh~~-~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
.++||+|++...-... ....---.++++.+.+.|+|||+++....
T Consensus 224 ~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 5789999987531100 01112236789999999999999988743
No 135
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.00 E-value=5.1e-09 Score=94.85 Aligned_cols=111 Identities=11% Similarity=0.070 Sum_probs=79.1
Q ss_pred CCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCC---CceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRK---NFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~---~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
...+||+||||+|+.+..+++.. ..+++++|+++++++.|++.+..... ..+++++.+|.... +....++|
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~-----l~~~~~~y 146 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKF-----LADTENTF 146 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHH-----HHhCCCCc
Confidence 44699999999998777776654 57899999999999999987654221 12467777775431 11124789
Q ss_pred eEEEeccchhhhcCCHHH--HHHHHHHHHhccCCCcEEEEEecC
Q 021467 107 DLVCCFQHLQMCFETEER--ARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~--~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
|+|++...-.. ..... ..++++.+.+.|+|||++++...+
T Consensus 147 DvIi~D~~~~~--~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 147 DVIIVDSTDPV--GPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred cEEEEeCCCCC--CcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 99998654222 11111 468899999999999999987443
No 136
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.99 E-value=6.1e-09 Score=89.87 Aligned_cols=121 Identities=7% Similarity=-0.003 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhc--CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 021467 18 EFAKTALIKIYS--HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF 95 (312)
Q Consensus 18 n~vk~~li~~~~--~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~ 95 (312)
.-++..+++.+. .++.+|||+|||+|.....++..+..+++++|+++.+++.|+++++.++. .++.++++|+... +
T Consensus 38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~-l 115 (199)
T PRK10909 38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSF-L 115 (199)
T ss_pred HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHH-H
Confidence 334444444332 25679999999999777655555667999999999999999998877653 2588999987542 1
Q ss_pred hhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHh--ccCCCcEEEEEecCh
Q 021467 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSS--LLKPGGYFLGITPDS 149 (312)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~--~LkpGG~~i~~~p~~ 149 (312)
.....+||+|++.-..+. . ....+++.+.. +|+|+|++++..+..
T Consensus 116 ----~~~~~~fDlV~~DPPy~~--g---~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 116 ----AQPGTPHNVVFVDPPFRK--G---LLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred ----hhcCCCceEEEECCCCCC--C---hHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 112357999999886443 1 13344555544 589999999886543
No 137
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=8.9e-09 Score=93.57 Aligned_cols=105 Identities=21% Similarity=0.215 Sum_probs=79.5
Q ss_pred EEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEec
Q 021467 34 TVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF 112 (312)
Q Consensus 34 ~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~ 112 (312)
+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++...++. .++.+++.|.+..- .++||+|+|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~--------~~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPL--------RGKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccccc--------CCceeEEEeC
Confidence 79999999998777777664 35999999999999999999988775 44556666665522 3589999996
Q ss_pred cch-hh-----------------h---cCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 113 QHL-QM-----------------C---FETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 113 ~~l-h~-----------------~---~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
-.. -. + ....+..+.++.++.+.|+|||.+++-+-
T Consensus 184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 531 00 0 01234568899999999999999998754
No 138
>PLN02366 spermidine synthase
Probab=98.98 E-value=3.8e-09 Score=97.06 Aligned_cols=113 Identities=11% Similarity=0.015 Sum_probs=81.3
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhhhcCC
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN 104 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~---~~~~~~f~~~D~~~~~~~~~~~~~~~ 104 (312)
.++..+||+||||.|+.+..+++.+ ..+++.+||++.+++.|++.+...+ ...+++++.+|+...-- .. +.+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~--~~--~~~ 164 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK--NA--PEG 164 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh--hc--cCC
Confidence 3456899999999999888887764 5789999999999999999875421 12358999999754110 00 246
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+||+|++-..-+......--...+++.+.++|+|||+++..
T Consensus 165 ~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 165 TYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 89999986543321111112467899999999999999865
No 139
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=4.9e-09 Score=89.95 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=82.5
Q ss_pred HHHHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 021467 20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ 98 (312)
Q Consensus 20 vk~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~ 98 (312)
+...+++.. ..++.+|||||||+|..+.-+++.. .+|+.+|+.++..+.|+++++..+.. ++.+.++|......
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~--- 134 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV-GRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWP--- 134 (209)
T ss_pred HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCC---
Confidence 444555554 4589999999999996665555443 39999999999999999999887643 39999999877433
Q ss_pred hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 99 MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 99 ~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
+..+||.|++..+.-. .=+.+.+.||+||++++-+-
T Consensus 135 ---~~aPyD~I~Vtaaa~~----------vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 135 ---EEAPYDRIIVTAAAPE----------VPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred ---CCCCcCEEEEeeccCC----------CCHHHHHhcccCCEEEEEEc
Confidence 4589999998885433 12334568999999997644
No 140
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=9.9e-09 Score=90.06 Aligned_cols=113 Identities=17% Similarity=0.107 Sum_probs=92.8
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
+.|+.+|||.|.|+|..+..++.. +.++|+.+|+-++..+.|+++++..+....+.+..+|+.+... ...|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~-------~~~v 164 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID-------EEDV 164 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc-------cccc
Confidence 458999999999999777766643 5579999999999999999999887665568888899887554 3489
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHH
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~ 157 (312)
|+|+. +..+.-.++.+++++|+|||.+++-.|+.+.+.+.+.
T Consensus 165 Dav~L---------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~ 206 (256)
T COG2519 165 DAVFL---------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE 206 (256)
T ss_pred CEEEE---------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence 99863 3445778899999999999999999999987765554
No 141
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.94 E-value=7.7e-10 Score=95.01 Aligned_cols=112 Identities=21% Similarity=0.300 Sum_probs=94.2
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
....++|||||-|.....+...+..+++-+|.|-.|++.++..-. + .......++|-...++ +++++|+|+
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p--~i~~~~~v~DEE~Ldf------~ens~DLii 142 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-P--SIETSYFVGDEEFLDF------KENSVDLII 142 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-C--ceEEEEEecchhcccc------cccchhhhh
Confidence 456899999999988888888888999999999999998876522 2 3446677888766666 789999999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHH
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK 155 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~ 155 (312)
+..++|+ ..++...+..++..|||+|.|+++....+.+++.
T Consensus 143 sSlslHW----~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyEL 183 (325)
T KOG2940|consen 143 SSLSLHW----TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYEL 183 (325)
T ss_pred hhhhhhh----hccCchHHHHHHHhcCCCccchhHHhccccHHHH
Confidence 9999999 6678889999999999999999998888877654
No 142
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.94 E-value=5.4e-09 Score=95.48 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=83.1
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
-.+..|||+|||+|-.....++++..+|+|+|-|.-+ +.|++....++....++++.+.+.+..+ |..+.|+|
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~L------P~eKVDiI 131 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIEL------PVEKVDII 131 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEec------CccceeEE
Confidence 3688999999999955555556788999999999766 8999999988877779999998887655 45899999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i 143 (312)
++-+. -|++..+.-+...|-.=-+.|+|||.++
T Consensus 132 vSEWM-Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 132 VSEWM-GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred eehhh-hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 98663 3333335556666666679999999975
No 143
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.92 E-value=1.2e-08 Score=92.74 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=78.7
Q ss_pred CCEEEEECCCCCccHHHH----HHc-----CCCeEEEEeCChHHHHHHHHHH-H----------------hc------C-
Q 021467 32 YVTVCDLYCGAGVDVDKW----ETA-----LIANYIGIDVATSGIGEARDTW-E----------------NQ------R- 78 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~----~~~-----~~~~v~giDis~~~i~~a~~r~-~----------------~~------~- 78 (312)
..+|+..||++|.....+ ... ...+|+|+|||+.+|+.|++-. . .. +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 479999999999633222 111 1247999999999999998731 0 00 0
Q ss_pred ------CCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 79 ------KNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 79 ------~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
....+.|.+.|+.+.++. ..+.||+|+|.+++.| -+.+....+++++++.|+|||+|++.
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~-----~~~~fD~I~cRNvliy--F~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWA-----VPGPFDAIFCRNVMIY--FDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCc-----cCCCcceeeHhhHHhc--CCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 112368888888764431 2478999999999988 56888999999999999999998765
No 144
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.92 E-value=8.6e-09 Score=91.66 Aligned_cols=96 Identities=26% Similarity=0.264 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
+..+|+|||+|.|..+..++++ +..+++..|+ ++.++.+++ . .+++++.+|+. .++ + . +|++
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---~----~rv~~~~gd~f-~~~------P-~-~D~~ 162 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---A----DRVEFVPGDFF-DPL------P-V-ADVY 162 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---T----TTEEEEES-TT-TCC------S-S-ESEE
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---c----cccccccccHH-hhh------c-c-ccce
Confidence 5568999999999888888766 5679999999 778888887 2 23999999998 454 3 3 9999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCC--cEEEEE
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI 145 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG--G~~i~~ 145 (312)
++...+|. .+.++...+|+++++.|+|| |++++.
T Consensus 163 ~l~~vLh~--~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 163 LLRHVLHD--WSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp EEESSGGG--S-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred eeehhhhh--cchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 99999999 78999999999999999999 999987
No 145
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.92 E-value=1.3e-08 Score=87.76 Aligned_cols=117 Identities=16% Similarity=0.169 Sum_probs=83.4
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
....+||||||.|..+..++.. +...++|+|++...+..|.++....+. .++.++++|+... + ..+. +++++|.|
T Consensus 17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~-l-~~~~-~~~~v~~i 92 (195)
T PF02390_consen 17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDAREL-L-RRLF-PPGSVDRI 92 (195)
T ss_dssp CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTH-H-HHHS-TTTSEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHH-H-hhcc-cCCchheE
Confidence 3448999999999999888766 667999999999999999988876542 3589999998662 1 1111 35899999
Q ss_pred Eeccch------hhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHH
Q 021467 110 CCFQHL------QMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIW 153 (312)
Q Consensus 110 ~~~~~l------h~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~ 153 (312)
..+|.= |+ ...--...++..++++|+|||.+.+.|-+.+...
T Consensus 93 ~i~FPDPWpK~rH~--krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~ 140 (195)
T PF02390_consen 93 YINFPDPWPKKRHH--KRRLVNPEFLELLARVLKPGGELYFATDVEEYAE 140 (195)
T ss_dssp EEES-----SGGGG--GGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHH
T ss_pred EEeCCCCCcccchh--hhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHH
Confidence 998862 21 0011237899999999999999998876665443
No 146
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.91 E-value=1.9e-08 Score=97.32 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=79.4
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.++.+|||+|||+|..+..++... .+++|+|+|++|++.|+++.+.++. .+++++++|+.+... .....+++||+|
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~--~~~~~~~~fD~V 371 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFT--DQPWALGGFDKV 371 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhh--hhhhhcCCCCEE
Confidence 467899999999998777766554 6999999999999999998876653 248999999864210 000124679999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~ 156 (312)
++.-.-.- ....++.+.+ ++|++++++++ |...+.+-+
T Consensus 372 i~dPPr~g-------~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl 409 (443)
T PRK13168 372 LLDPPRAG-------AAEVMQALAK-LGPKRIVYVSC-NPATLARDA 409 (443)
T ss_pred EECcCCcC-------hHHHHHHHHh-cCCCeEEEEEe-ChHHhhccH
Confidence 98654221 2334555555 68998888775 555554443
No 147
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.89 E-value=7.2e-08 Score=85.11 Aligned_cols=141 Identities=15% Similarity=0.076 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc
Q 021467 16 LYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN 94 (312)
Q Consensus 16 ~~n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~ 94 (312)
+..||...+-+.-...+..+||+|||+|..+..++.. +...++++|.|+.++..|.++.........+..++.++....
T Consensus 133 ~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~ 212 (328)
T KOG2904|consen 133 WVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDA 212 (328)
T ss_pred HHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccc
Confidence 3344444444444445678999999999888777665 667999999999999999998877665556777766665544
Q ss_pred hhhhhhhcCCceeEEEeccch--hh--------------------hcCCHHHHHHHHHHHHhccCCCcEEEEEe---cCh
Q 021467 95 FETQMQEKANQADLVCCFQHL--QM--------------------CFETEERARRLLQNVSSLLKPGGYFLGIT---PDS 149 (312)
Q Consensus 95 ~~~~~~~~~~~fD~V~~~~~l--h~--------------------~~~~~~~~~~~l~~i~~~LkpGG~~i~~~---p~~ 149 (312)
+.+. +...++.|+++|+-.. +. -.+..+.+..++.-+.|+|+|||.+.+.. +..
T Consensus 213 ~~~~-~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 213 SDEH-PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred cccc-ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccC
Confidence 3321 1145899999996531 00 01223455677788899999999999874 455
Q ss_pred hHHHHHHH
Q 021467 150 STIWAKYQ 157 (312)
Q Consensus 150 ~~l~~~~~ 157 (312)
..+.+.+.
T Consensus 292 ~~lv~~~m 299 (328)
T KOG2904|consen 292 SYLVRIWM 299 (328)
T ss_pred cHHHHHHH
Confidence 55655554
No 148
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.88 E-value=1.2e-08 Score=88.44 Aligned_cols=106 Identities=16% Similarity=0.140 Sum_probs=81.2
Q ss_pred CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCCce
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQA 106 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~~f 106 (312)
...+||+|||++|..+..++.. ..++++.+|++++..+.|++.++..+...+++++.+|+.+. ...+.. ..++|
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~--l~~l~~~~~~~~f 122 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEV--LPELANDGEEGQF 122 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHH--HHHHHHTTTTTSE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhh--HHHHHhccCCCce
Confidence 4579999999999777777665 34699999999999999999998877666799999987541 111211 13689
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|+|+.-..-. +....+..+.++|+|||.+++.
T Consensus 123 D~VFiDa~K~-------~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 123 DFVFIDADKR-------NYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp EEEEEESTGG-------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEEccccc-------chhhHHHHHhhhccCCeEEEEc
Confidence 9999876433 2567788888999999999987
No 149
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.87 E-value=4.6e-08 Score=87.83 Aligned_cols=128 Identities=19% Similarity=0.237 Sum_probs=88.9
Q ss_pred cchHHhHHHHHHHHHHHHhcCCCCEEEEECCCCCccHHHHH----Hc------CCCeEEEEeCChHHHHHHHHH-HH---
Q 021467 10 ELTHHRLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWE----TA------LIANYIGIDVATSGIGEARDT-WE--- 75 (312)
Q Consensus 10 ~~~~~~~~n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~----~~------~~~~v~giDis~~~i~~a~~r-~~--- 75 (312)
..+...+.+.+...|+..-.....+|+-+||++|.-...++ .. ...+++|+|||..+|+.|+.- |.
T Consensus 75 ~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~ 154 (268)
T COG1352 75 PEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRE 154 (268)
T ss_pred cHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhH
Confidence 33344444555554444333246799999999996332221 11 135899999999999999761 11
Q ss_pred ---h------------cCC---------CceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHH
Q 021467 76 ---N------------QRK---------NFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQN 131 (312)
Q Consensus 76 ---~------------~~~---------~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~ 131 (312)
. ... ...+.|-..|+..... ..+.||+|+|-.+|-| -+.+...+++..
T Consensus 155 ~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~------~~~~fD~IfCRNVLIY--Fd~~~q~~il~~ 226 (268)
T COG1352 155 LLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP------FLGKFDLIFCRNVLIY--FDEETQERILRR 226 (268)
T ss_pred hhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc------ccCCCCEEEEcceEEe--eCHHHHHHHHHH
Confidence 0 000 1235777888777653 2478999999999998 668889999999
Q ss_pred HHhccCCCcEEEEE
Q 021467 132 VSSLLKPGGYFLGI 145 (312)
Q Consensus 132 i~~~LkpGG~~i~~ 145 (312)
++..|+|||++++-
T Consensus 227 f~~~L~~gG~LflG 240 (268)
T COG1352 227 FADSLKPGGLLFLG 240 (268)
T ss_pred HHHHhCCCCEEEEc
Confidence 99999999999975
No 150
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.87 E-value=3.3e-08 Score=93.14 Aligned_cols=123 Identities=15% Similarity=0.095 Sum_probs=95.1
Q ss_pred HHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCC-CceEEEEEcCCCCCchhhhhhhc
Q 021467 24 LIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRK-NFIAEFFEADPCAENFETQMQEK 102 (312)
Q Consensus 24 li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~-~~~~~f~~~D~~~~~~~~~~~~~ 102 (312)
.+...+. +.+|||+-|=||+.....+..+..+|++||+|..+|+.|+++++-++. ..++.|+++|+.+. .......
T Consensus 211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~--l~~~~~~ 287 (393)
T COG1092 211 ALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW--LRKAERR 287 (393)
T ss_pred HHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH--HHHHHhc
Confidence 3455555 899999999999999988888888999999999999999999998875 34589999998762 2222223
Q ss_pred CCceeEEEeccc-----hhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 103 ANQADLVCCFQH-----LQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 103 ~~~fD~V~~~~~-----lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
..+||+|++--. -...+.-..+...++..+.++|+|||+++.++...
T Consensus 288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 469999998432 11112335567888999999999999999886665
No 151
>PRK03612 spermidine synthase; Provisional
Probab=98.86 E-value=1.5e-08 Score=99.82 Aligned_cols=113 Identities=12% Similarity=0.013 Sum_probs=80.1
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCC-CeEEEEeCChHHHHHHHHH--HHhcC----CCceEEEEEcCCCCCchhhhhhhc
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDT--WENQR----KNFIAEFFEADPCAENFETQMQEK 102 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r--~~~~~----~~~~~~f~~~D~~~~~~~~~~~~~ 102 (312)
++..+|||+|||+|..+..+++.+. .+++++|+++++++.|++. ....+ ...+++++.+|..+. +...
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~-----l~~~ 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW-----LRKL 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH-----HHhC
Confidence 4567999999999988887777654 7999999999999999983 32211 123588899987642 1113
Q ss_pred CCceeEEEeccchhhhcC-CHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 103 ANQADLVCCFQHLQMCFE-TEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 103 ~~~fD~V~~~~~lh~~~~-~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
+++||+|++...-..... ..--.+++++.+.++|+|||.+++...
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 478999999764322000 011135689999999999999998743
No 152
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.1e-08 Score=85.84 Aligned_cols=74 Identities=22% Similarity=0.098 Sum_probs=61.9
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
.+.+|+|+|||||......+..+..+|+|+|+++++++.|+++.... ...+.|+++|+.+ ..+.+|.|+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~---------~~~~~dtvi 113 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSD---------FRGKFDTVI 113 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhh---------cCCccceEE
Confidence 56789999999998777776778889999999999999999998763 3459999999977 357899888
Q ss_pred eccch
Q 021467 111 CFQHL 115 (312)
Q Consensus 111 ~~~~l 115 (312)
++-.+
T Consensus 114 mNPPF 118 (198)
T COG2263 114 MNPPF 118 (198)
T ss_pred ECCCC
Confidence 87543
No 153
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.85 E-value=5.5e-08 Score=83.41 Aligned_cols=113 Identities=8% Similarity=-0.006 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+|||++||+|.....++..+..+++++|+++.+++.++++.+.++...+++++++|+... + ..+......||+|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~-l-~~~~~~~~~~dvv~ 126 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA-L-KFLAKKPTFDNVIY 126 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH-H-HHhhccCCCceEEE
Confidence 578999999999988888877777799999999999999999988776544588999998442 1 11111123478888
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
.--.... ...+..-..+.+ ..+|+++|.+++..+.
T Consensus 127 ~DPPy~~--~~~~~~l~~l~~-~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 127 LDPPFFN--GALQALLELCEN-NWILEDTVLIVVEEDR 161 (189)
T ss_pred ECcCCCC--CcHHHHHHHHHH-CCCCCCCeEEEEEecC
Confidence 7654432 212223223322 3579999998887554
No 154
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.84 E-value=8.3e-08 Score=88.48 Aligned_cols=113 Identities=12% Similarity=0.049 Sum_probs=78.6
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHH-hcCCCceEEEEEcCCCCCchhhhhhh-
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQE- 101 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~-----~~~~v~giDis~~~i~~a~~r~~-~~~~~~~~~f~~~D~~~~~~~~~~~~- 101 (312)
+.++..++|+|||+|.-...++.+ ....|+++|||.++|+.+.++.. ..-....+.-+++|..+.-- .++.
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~--~l~~~ 151 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA--WLKRP 151 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHh--hcccc
Confidence 456779999999999755444332 24589999999999999999987 32123445557887654210 0110
Q ss_pred -cCCceeEEEec-cchhhhcCCHHHHHHHHHHHHh-ccCCCcEEEEE
Q 021467 102 -KANQADLVCCF-QHLQMCFETEERARRLLQNVSS-LLKPGGYFLGI 145 (312)
Q Consensus 102 -~~~~fD~V~~~-~~lh~~~~~~~~~~~~l~~i~~-~LkpGG~~i~~ 145 (312)
......+++.. .++.+ .+.+.+..+|+++++ .|+|||.|++.
T Consensus 152 ~~~~~~r~~~flGSsiGN--f~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 152 ENRSRPTTILWLGSSIGN--FSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred cccCCccEEEEeCccccC--CCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 12335666554 45777 567889999999999 99999998876
No 155
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.83 E-value=2.6e-08 Score=88.81 Aligned_cols=132 Identities=20% Similarity=0.140 Sum_probs=87.0
Q ss_pred HhHHHHHHHHHHHHhcC---CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC------------
Q 021467 14 HRLYEFAKTALIKIYSH---PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR------------ 78 (312)
Q Consensus 14 ~~~~n~vk~~li~~~~~---~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~------------ 78 (312)
..+..|....+-+.+.. ++.++||||||.--.-..-+.....+++..|.++..+++.++-.+..+
T Consensus 36 ~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~ 115 (256)
T PF01234_consen 36 DEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVC 115 (256)
T ss_dssp HHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHH
T ss_pred chhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHH
Confidence 45666666666666654 467999999998522111122255689999999999987766443210
Q ss_pred ----C-----------Cce-EEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEE
Q 021467 79 ----K-----------NFI-AEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142 (312)
Q Consensus 79 ----~-----------~~~-~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~ 142 (312)
. +.. -..+.+|+...+........+.+||+|++.+++..+..+.+....+++++.++|||||.|
T Consensus 116 ~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~L 195 (256)
T PF01234_consen 116 ELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHL 195 (256)
T ss_dssp HHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEE
T ss_pred hccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEE
Confidence 0 001 246788888755422100012469999999999999999999999999999999999999
Q ss_pred EEE
Q 021467 143 LGI 145 (312)
Q Consensus 143 i~~ 145 (312)
++.
T Consensus 196 il~ 198 (256)
T PF01234_consen 196 ILA 198 (256)
T ss_dssp EEE
T ss_pred EEE
Confidence 987
No 156
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.82 E-value=3.7e-08 Score=91.17 Aligned_cols=109 Identities=18% Similarity=0.180 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++.+.++. .+++|+++|+.+... ...+.||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~-----~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFAT-----AQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHH-----hcCCCCeEEE
Confidence 46899999999998887776644 6999999999999999999887764 358999999855321 0235799999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~ 154 (312)
+.-.- . .-. ..+++.+ ..++|+++++++ .|...+.+
T Consensus 246 ~dPPr-~--G~~---~~~~~~l-~~~~~~~ivyvs-c~p~t~~r 281 (315)
T PRK03522 246 VNPPR-R--GIG---KELCDYL-SQMAPRFILYSS-CNAQTMAK 281 (315)
T ss_pred ECCCC-C--Ccc---HHHHHHH-HHcCCCeEEEEE-CCcccchh
Confidence 87541 1 101 1222222 336787766665 44444433
No 157
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.82 E-value=2e-08 Score=87.08 Aligned_cols=114 Identities=20% Similarity=0.256 Sum_probs=75.8
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCC-CceEE--EEE--------------c----
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK-NFIAE--FFE--------------A---- 88 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~-~~~~~--f~~--------------~---- 88 (312)
.+..+|||||-+|.....+++. +...++|+||++..|+.|++..+.... ...+. +.. +
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4678999999999777776665 667899999999999999987643210 00000 000 0
Q ss_pred --CCCCC-ch---------hhhhhhcCCceeEEEeccc---hhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 89 --DPCAE-NF---------ETQMQEKANQADLVCCFQH---LQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 89 --D~~~~-~~---------~~~~~~~~~~fD~V~~~~~---lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|..+. .+ .+.+......||+|.|... +| .-.+.+.+..+++.++++|.|||+|++-
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIH-LNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIH-LNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEe-cccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 00000 00 0011124578999999655 34 2345778999999999999999999985
No 158
>PLN02476 O-methyltransferase
Probab=98.82 E-value=4.6e-08 Score=88.30 Aligned_cols=106 Identities=8% Similarity=0.021 Sum_probs=82.5
Q ss_pred CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCCce
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA 106 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~~f 106 (312)
+..+|||||||+|..+..++.. ...+++.+|.+++..+.|++.++..+...+++++.+|+.+. + +.+. ...++|
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~-L-~~l~~~~~~~~F 195 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES-L-KSMIQNGEGSSY 195 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH-H-HHHHhcccCCCC
Confidence 4679999999999777666553 24589999999999999999999887766799999997652 1 1111 113689
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|+|+.-.. ..+....++.+.++|+|||.+++.
T Consensus 196 D~VFIDa~-------K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 196 DFAFVDAD-------KRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CEEEECCC-------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence 99987653 445788889999999999999876
No 159
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.81 E-value=1.7e-07 Score=83.78 Aligned_cols=112 Identities=19% Similarity=0.191 Sum_probs=91.5
Q ss_pred CCCEEEEECCCCCccHHHHHHc-C--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
...+||||+||.|+.+...+.. + ..++.-.|.|+..++.+++..+..+...-++|.++|+++..-. ..-+...|
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l---~~l~p~P~ 211 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSL---AALDPAPT 211 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHh---hccCCCCC
Confidence 4579999999999988877654 2 4689999999999999999999988776679999999884321 11235678
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
+++++..+. .|.+-+.....+..+++++.|||++|.|.
T Consensus 212 l~iVsGL~E-lF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 212 LAIVSGLYE-LFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEEEecchh-hCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 888777555 47888888999999999999999999994
No 160
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.79 E-value=3.1e-08 Score=88.04 Aligned_cols=119 Identities=17% Similarity=0.200 Sum_probs=88.5
Q ss_pred HhcCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCC
Q 021467 27 IYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN 104 (312)
Q Consensus 27 ~~~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~ 104 (312)
.-+.||.+|||.|.|+|..+..++.. +.++|+..|+.++..+.|++.++..+....+.+.+.|+....+... .+.
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~---~~~ 112 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE---LES 112 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT----TT
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc---ccC
Confidence 34569999999999999887777654 5579999999999999999999988776679999999986554211 136
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHHhcc-CCCcEEEEEecChhHHHHHHH
Q 021467 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLL-KPGGYFLGITPDSSTIWAKYQ 157 (312)
Q Consensus 105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~L-kpGG~~i~~~p~~~~l~~~~~ 157 (312)
.+|.|+.-. .+.-.++..+.++| ||||++++-.|+-+.+.+...
T Consensus 113 ~~DavfLDl---------p~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~ 157 (247)
T PF08704_consen 113 DFDAVFLDL---------PDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVE 157 (247)
T ss_dssp SEEEEEEES---------SSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHH
T ss_pred cccEEEEeC---------CCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHH
Confidence 899987543 22445688899999 899999999999987765554
No 161
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.78 E-value=6.5e-08 Score=84.94 Aligned_cols=116 Identities=15% Similarity=0.122 Sum_probs=90.0
Q ss_pred CEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 33 ~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
..+||||||.|..+..+++. +...++|||+....+..|.++....+.. ++.+++.|+... ...+. ++++.|-|..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~--l~~~~-~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEV--LDYLI-PDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHH--HHhcC-CCCCeeEEEE
Confidence 48999999999999988876 5568999999999999999998876642 688899998652 22222 3569999999
Q ss_pred ccch------hhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467 112 FQHL------QMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (312)
Q Consensus 112 ~~~l------h~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~ 154 (312)
+|.= |+ ...--...+++.+.+.|+|||.+.+.|-+.+....
T Consensus 126 ~FPDPWpKkRH~--KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 126 NFPDPWPKKRHH--KRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred ECCCCCCCcccc--ccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 8862 22 11222478999999999999999999877765544
No 162
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.76 E-value=1.1e-07 Score=80.34 Aligned_cols=113 Identities=19% Similarity=0.048 Sum_probs=71.2
Q ss_pred CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~--~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
.++.+|||||||+|-.....+.. +..+|+..|..+ .++.++.+.+.++ ...++.+...|-.+......+ ...+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~--~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL--EPHSF 120 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH--S-SSB
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc--ccccC
Confidence 36789999999999544444444 577999999999 9999998887765 334466666664432111111 24689
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
|+|++..++.. .+..+.+++.+.++|+|+|.+++..+..
T Consensus 121 D~IlasDv~Y~----~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 121 DVILASDVLYD----EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SEEEEES--S-----GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CEEEEecccch----HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 99999997665 5678899999999999999988775543
No 163
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.75 E-value=8.2e-08 Score=92.57 Aligned_cols=103 Identities=15% Similarity=0.120 Sum_probs=74.5
Q ss_pred CCEEEEECCCCCccHHHHHHcC-----CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 32 YVTVCDLYCGAGVDVDKWETAL-----IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~-----~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
+..|||+|||+|......++++ ..+|++|+-++.++...+++.+.++...+++++++|+.+..+ +.++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence 4689999999996655555543 569999999999998888886766666679999999999776 4699
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i 143 (312)
|+|++-. |-. |...+...+.|....+.|||||++|
T Consensus 260 DIIVSEl-LGs-fg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 260 DIIVSEL-LGS-FGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEEE----BT-TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eEEEEec-cCC-ccccccCHHHHHHHHhhcCCCCEEe
Confidence 9999843 111 2223345667899999999999985
No 164
>PLN02672 methionine S-methyltransferase
Probab=98.74 E-value=7e-08 Score=100.96 Aligned_cols=113 Identities=18% Similarity=0.093 Sum_probs=81.1
Q ss_pred CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCC---------------CceEEEEEcCCCCCch
Q 021467 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK---------------NFIAEFFEADPCAENF 95 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~---------------~~~~~f~~~D~~~~~~ 95 (312)
+.+|||+|||+|.....++.. +..+++|+|+|+++++.|+++...++. ..+++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 468999999999888777665 446999999999999999999876421 1258999999875321
Q ss_pred hhhhhhcCCceeEEEeccch------h---------------h------h-------cCCHHHHHHHHHHHHhccCCCcE
Q 021467 96 ETQMQEKANQADLVCCFQHL------Q---------------M------C-------FETEERARRLLQNVSSLLKPGGY 141 (312)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~l------h---------------~------~-------~~~~~~~~~~l~~i~~~LkpGG~ 141 (312)
....+||+|+++-.. . | + -....-.+.++.++.++|+|||.
T Consensus 199 -----~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~ 273 (1082)
T PLN02672 199 -----DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI 273 (1082)
T ss_pred -----ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 012369999985431 0 0 0 01123347888999999999999
Q ss_pred EEEEecCh
Q 021467 142 FLGITPDS 149 (312)
Q Consensus 142 ~i~~~p~~ 149 (312)
+++-+-..
T Consensus 274 l~lEiG~~ 281 (1082)
T PLN02672 274 MIFNMGGR 281 (1082)
T ss_pred EEEEECcc
Confidence 99875433
No 165
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.74 E-value=4.6e-08 Score=86.31 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=69.5
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
..++||||.|.|+.+..++. ...+|++.++|+.|....+++ + .+ +.|+.+.. ..+.+||+|+|
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~-~f~~v~aTE~S~~Mr~rL~~k----g----~~--vl~~~~w~------~~~~~fDvIsc 157 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAP-LFKEVYATEASPPMRWRLSKK----G----FT--VLDIDDWQ------QTDFKFDVISC 157 (265)
T ss_pred CCceEEecCCCcHHHHHHHh-hcceEEeecCCHHHHHHHHhC----C----Ce--EEehhhhh------ccCCceEEEee
Confidence 45799999999988887743 567899999999996544443 3 22 22332211 13568999999
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
...+--+. +...+|+.+++.|+|+|++++.
T Consensus 158 LNvLDRc~----~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 158 LNVLDRCD----RPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hhhhhccC----CHHHHHHHHHHHhCCCCEEEEE
Confidence 99776643 4888999999999999999977
No 166
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.73 E-value=1.8e-07 Score=79.55 Aligned_cols=127 Identities=20% Similarity=0.251 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHh-cCCCCEEEEECCCCCccHHHHHHc--CCC--------eEEEEeCChHHHHHHHHHHHhcCCCceE
Q 021467 15 RLYEFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETA--LIA--------NYIGIDVATSGIGEARDTWENQRKNFIA 83 (312)
Q Consensus 15 ~~~n~vk~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~--~~~--------~v~giDis~~~i~~a~~r~~~~~~~~~~ 83 (312)
-++..+...|+..- ..++..|||--||+|..+...+.. ... .++|.|+++.+++.|+++.+..+....+
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 34555555555543 347789999999999877654432 222 3899999999999999999887766678
Q ss_pred EEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCC----HHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 84 EFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFET----EERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 84 ~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~----~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
.+.+.|+...++ .++++|+|++.-..-.-..+ ..-...+++++.++|++ ..++++..+
T Consensus 91 ~~~~~D~~~l~~------~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~ 152 (179)
T PF01170_consen 91 DFIQWDARELPL------PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN 152 (179)
T ss_dssp EEEE--GGGGGG------TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC
T ss_pred EEEecchhhccc------ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC
Confidence 999999987664 46899999997654322232 23346678899999999 444444433
No 167
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.71 E-value=1.6e-07 Score=85.26 Aligned_cols=121 Identities=18% Similarity=0.226 Sum_probs=84.9
Q ss_pred HHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhhhcC
Q 021467 25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKA 103 (312)
Q Consensus 25 i~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~~~~~~~~~ 103 (312)
+..+. ++.+|||+-|=+|+.....+..+..+|++||.|..+++.|++++.-++.. .+++|++.|+.+. ...+. ..
T Consensus 118 v~~~~-~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~--l~~~~-~~ 193 (286)
T PF10672_consen 118 VRKYA-KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF--LKRLK-KG 193 (286)
T ss_dssp HHHHC-TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH--HHHHH-HT
T ss_pred HHHHc-CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH--HHHHh-cC
Confidence 33444 47899999999999998877778889999999999999999999888753 4689999998652 12222 34
Q ss_pred CceeEEEeccc-h-hhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 104 NQADLVCCFQH-L-QMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 104 ~~fD~V~~~~~-l-h~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
++||+|++--. + .-.+.-..+...++..+.++|+|||.++.++...
T Consensus 194 ~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 194 GRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp T-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 79999998322 0 1112224566788999999999999998775544
No 168
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.70 E-value=1.1e-07 Score=87.58 Aligned_cols=85 Identities=16% Similarity=0.124 Sum_probs=60.2
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEE-cCCCCCchhhhhhhcCCcee
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFE-ADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~-~~~~~~~f~~-~D~~~~~~~~~~~~~~~~fD 107 (312)
++.+|||||||+|.....+... ...+++|+||++.+++.|++..+.+ +...++.+.. .|... +...+..+.+.||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~--i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA--IFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh--hhhcccccCCceE
Confidence 4579999999999665555433 4569999999999999999999887 5555566654 23221 1111111356899
Q ss_pred EEEeccchhh
Q 021467 108 LVCCFQHLQM 117 (312)
Q Consensus 108 ~V~~~~~lh~ 117 (312)
+|+|+-.+|-
T Consensus 192 livcNPPf~~ 201 (321)
T PRK11727 192 ATLCNPPFHA 201 (321)
T ss_pred EEEeCCCCcC
Confidence 9999988775
No 169
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.69 E-value=2.5e-07 Score=83.95 Aligned_cols=86 Identities=10% Similarity=0.040 Sum_probs=63.3
Q ss_pred HHHHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 021467 20 AKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ 98 (312)
Q Consensus 20 vk~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~ 98 (312)
+...+++.. ..++.+|||+|||+|..+..++.... +|+|+|++++|++.++++... .+++++++|+...++
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~--- 101 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDL--- 101 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCH---
Confidence 333444433 34778999999999988887777654 999999999999999987743 238999999988665
Q ss_pred hhhcCCceeEEEeccchh
Q 021467 99 MQEKANQADLVCCFQHLQ 116 (312)
Q Consensus 99 ~~~~~~~fD~V~~~~~lh 116 (312)
++..+|.|+++...+
T Consensus 102 ---~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 102 ---SELQPLKVVANLPYN 116 (272)
T ss_pred ---HHcCcceEEEeCCcc
Confidence 211258888776543
No 170
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.69 E-value=2e-07 Score=85.71 Aligned_cols=111 Identities=21% Similarity=0.192 Sum_probs=85.2
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc-CCCCCchhhhhhhcCCcee
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQEKANQAD 107 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~-D~~~~~~~~~~~~~~~~fD 107 (312)
+.+|..|||-=||||+.+......+. +++|.|++..|++-|+.+++..+... ..+... |+...++ ++.++|
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl------~~~~vd 266 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPL------RDNSVD 266 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecccccCCC------CCCccc
Confidence 45788999999999998887655455 99999999999999999988765221 333444 9988887 456799
Q ss_pred EEEeccchhhh----cCC-HHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 108 LVCCFQHLQMC----FET-EERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 108 ~V~~~~~lh~~----~~~-~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
.|.+-...--. -.. .+-..++|+.++++||+||++++..|
T Consensus 267 aIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 267 AIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred eEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99985432211 011 35578999999999999999999988
No 171
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.66 E-value=2e-07 Score=81.15 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=81.5
Q ss_pred CCCEEEEECCCCCccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEE-cCCCCCchhhhhhhcCCcee
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFE-ADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~-~D~~~~~~~~~~~~~~~~fD 107 (312)
...+||+||.+.|..+..++.. + ..+++.+|+++++.+.|++.++..+...++..+. +|..+. +. . ...++||
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~-l~-~--~~~~~fD 134 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV-LS-R--LLDGSFD 134 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH-HH-h--ccCCCcc
Confidence 5689999999999655555444 3 4689999999999999999999988777788888 465431 11 0 1368999
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+.-.. ..+...++..+.++|+|||.+++-
T Consensus 135 liFIDad-------K~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 135 LVFIDAD-------KADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEEEeCC-------hhhCHHHHHHHHHHhCCCcEEEEe
Confidence 9987663 445688999999999999999987
No 172
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.65 E-value=1.6e-07 Score=79.98 Aligned_cols=113 Identities=13% Similarity=0.082 Sum_probs=79.9
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+||||-||+|......+.++..+++.||.++.++...+++.+..+...++..+..|+...- ........+||+|+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l--~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL--LKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH--HHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH--HhhcccCCCceEEE
Confidence 6899999999999888888888999999999999999999999987665556888888864421 11211358999999
Q ss_pred eccchhhhcCCHHHHHHHHHHHH--hccCCCcEEEEEecCh
Q 021467 111 CFQHLQMCFETEERARRLLQNVS--SLLKPGGYFLGITPDS 149 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~--~~LkpGG~~i~~~p~~ 149 (312)
+--.... . .....++..+. .+|+++|.+++-....
T Consensus 120 lDPPY~~--~--~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 120 LDPPYAK--G--LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp E--STTS--C--HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred ECCCccc--c--hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 8775544 2 11355666666 8999999999886554
No 173
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.63 E-value=4.1e-07 Score=81.88 Aligned_cols=85 Identities=14% Similarity=0.059 Sum_probs=64.8
Q ss_pred HHHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh
Q 021467 21 KTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM 99 (312)
Q Consensus 21 k~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~ 99 (312)
...+++.. ..++.+|||+|||+|..+..++.. ..+++|+|+++.+++.++++.... .+++++++|+...++
T Consensus 18 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~---- 89 (258)
T PRK14896 18 VDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL---- 89 (258)
T ss_pred HHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc----
Confidence 33444433 346789999999999888877766 458999999999999999887542 248999999987554
Q ss_pred hhcCCceeEEEeccchhh
Q 021467 100 QEKANQADLVCCFQHLQM 117 (312)
Q Consensus 100 ~~~~~~fD~V~~~~~lh~ 117 (312)
..||.|+++...+.
T Consensus 90 ----~~~d~Vv~NlPy~i 103 (258)
T PRK14896 90 ----PEFNKVVSNLPYQI 103 (258)
T ss_pred ----hhceEEEEcCCccc
Confidence 34899999876553
No 174
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.63 E-value=1.6e-07 Score=85.98 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=63.0
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
..++.+|||||||+|..+..++.. ..+++|+|+++.+++.+++++...+...+++++++|+...++ ..||+
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~--------~~~d~ 104 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF--------PYFDV 104 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc--------cccCE
Confidence 457889999999999877776655 458999999999999999998754433458999999977543 46899
Q ss_pred EEeccchhh
Q 021467 109 VCCFQHLQM 117 (312)
Q Consensus 109 V~~~~~lh~ 117 (312)
|+++...+.
T Consensus 105 VvaNlPY~I 113 (294)
T PTZ00338 105 CVANVPYQI 113 (294)
T ss_pred EEecCCccc
Confidence 988766554
No 175
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.63 E-value=5.8e-07 Score=80.60 Aligned_cols=88 Identities=11% Similarity=-0.007 Sum_probs=64.1
Q ss_pred HHHHHHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467 18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (312)
Q Consensus 18 n~vk~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~ 96 (312)
..+...+++.. ..++.+|||+|||+|..+..++... ..++++|+++.+++.++++.... .++.++++|+...++
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~~---~~v~v~~~D~~~~~~- 89 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSLY---ERLEVIEGDALKVDL- 89 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCcC---CcEEEEECchhcCCh-
Confidence 33444444443 3467899999999998887776655 47999999999999999877432 238899999987665
Q ss_pred hhhhhcCCcee---EEEeccchhh
Q 021467 97 TQMQEKANQAD---LVCCFQHLQM 117 (312)
Q Consensus 97 ~~~~~~~~~fD---~V~~~~~lh~ 117 (312)
..+| +|+++...|.
T Consensus 90 -------~~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 90 -------PDFPKQLKVVSNLPYNI 106 (253)
T ss_pred -------hHcCCcceEEEcCChhh
Confidence 1355 7777776554
No 176
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.62 E-value=4e-07 Score=82.47 Aligned_cols=105 Identities=13% Similarity=0.075 Sum_probs=82.6
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
.+..|||+|||+|......+.++..+|++++.| +|.+.|++..+.++...++..+.+.+.+..+ +++.|+|+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-------PEk~DviI 248 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL-------PEKVDVII 248 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC-------chhccEEE
Confidence 567899999999955555556688999999987 6889999999888777789999998887666 47899988
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+-- +.|++.++.-++..+- .++.|+|.|.++=|
T Consensus 249 SEP-MG~mL~NERMLEsYl~-Ark~l~P~GkMfPT 281 (517)
T KOG1500|consen 249 SEP-MGYMLVNERMLESYLH-ARKWLKPNGKMFPT 281 (517)
T ss_pred ecc-chhhhhhHHHHHHHHH-HHhhcCCCCcccCc
Confidence 643 5566666665655554 56999999998766
No 177
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.61 E-value=2.9e-07 Score=88.89 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=77.5
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.++.+|||+|||+|..+..++.. ..+|+|+|+++.+++.|+++...++. .+++|+++|+.+. + ..+...+.+||+|
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~-l-~~~~~~~~~~D~v 366 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETV-L-PKQPWAGQIPDVL 366 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHH-H-HHHHhcCCCCCEE
Confidence 45689999999999887776654 45899999999999999999876653 3589999998542 1 1111124579999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~ 156 (312)
++.-.--- ....+++.+.+ ++|+++++++ .|...+...+
T Consensus 367 i~dPPr~G------~~~~~l~~l~~-l~~~~ivyvs-c~p~tlard~ 405 (431)
T TIGR00479 367 LLDPPRKG------CAAEVLRTIIE-LKPERIVYVS-CNPATLARDL 405 (431)
T ss_pred EECcCCCC------CCHHHHHHHHh-cCCCEEEEEc-CCHHHHHHHH
Confidence 87553110 02344555443 8898877665 4555554433
No 178
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.58 E-value=2.4e-07 Score=81.51 Aligned_cols=97 Identities=13% Similarity=0.056 Sum_probs=62.0
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+|||+|||+|+.+..++..+..+|+|+|+++.|+... ...+.. -..+...|+......+.. ..-..+|+++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~---l~~~~~--v~~~~~~ni~~~~~~~~~-~d~~~~Dvsf 148 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEK---LRQDER--VKVLERTNIRYVTPADIF-PDFATFDVSF 148 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHH---HhcCCC--eeEeecCCcccCCHhHcC-CCceeeeEEE
Confidence 6779999999999988888887778999999999988762 221111 012333444432221111 0123577665
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
+.. ...+.++.++|+| |.++..+
T Consensus 149 iS~------------~~~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 149 ISL------------ISILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred eeh------------HhHHHHHHHHhCc-CeEEEEc
Confidence 444 2248899999999 8777664
No 179
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.58 E-value=3e-07 Score=80.60 Aligned_cols=87 Identities=14% Similarity=0.225 Sum_probs=66.8
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
+....|.|+|||.+..+. .....|+.+|+-+. + -+.+.+|+...++ .+++.|++
T Consensus 179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a~-----------~-----~~V~~cDm~~vPl------~d~svDva 232 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVAV-----------N-----ERVIACDMRNVPL------EDESVDVA 232 (325)
T ss_pred cCceEEEecccchhhhhh----ccccceeeeeeecC-----------C-----CceeeccccCCcC------ccCcccEE
Confidence 466789999999984433 34457999998642 1 3468899999888 78999998
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
++..+|.- .++..+++++.|+|++||.+.+.-.
T Consensus 233 V~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 233 VFCLSLMG-----TNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred EeeHhhhc-----ccHHHHHHHHHHHhccCceEEEEeh
Confidence 77665432 3478899999999999999998833
No 180
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.57 E-value=6.6e-07 Score=79.71 Aligned_cols=106 Identities=12% Similarity=0.051 Sum_probs=80.9
Q ss_pred CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh---cCCc
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---KANQ 105 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~---~~~~ 105 (312)
+..+||+||++.|..+..++.. ...+++.+|++++..+.|++.++..+...+++++.+|+.+. + ..+.. ..++
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~-L-~~l~~~~~~~~~ 156 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPV-L-DQMIEDGKYHGT 156 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHH-H-HHHHhccccCCc
Confidence 4569999999999666655543 34699999999999999999999887767899999987552 1 11111 1368
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
||+|++-.. .......+..+.++|+|||.+++-
T Consensus 157 fD~iFiDad-------K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 157 FDFIFVDAD-------KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccEEEecCC-------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 999987653 344677788888999999998865
No 181
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.57 E-value=5.9e-07 Score=85.13 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=77.3
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+|||+|||+|.+...++..+ .+++|+|+++.+++.|+++.+.++.. +++|+++|+.+... . ...+||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~--~---~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFAT--A---QMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHH--h---cCCCCCEEE
Confidence 46799999999998777776544 68999999999999999998876643 58999999854211 0 124699998
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~ 156 (312)
+.-.-.- . ...+++.+. .++|++++++++ |...+.+-+
T Consensus 306 ~DPPr~G--~----~~~~l~~l~-~~~p~~ivyvsc-~p~TlaRDl 343 (374)
T TIGR02085 306 VNPPRRG--I----GKELCDYLS-QMAPKFILYSSC-NAQTMAKDI 343 (374)
T ss_pred ECCCCCC--C----cHHHHHHHH-hcCCCeEEEEEe-CHHHHHHHH
Confidence 8764211 1 233444443 378988777764 555555444
No 182
>PRK04148 hypothetical protein; Provisional
Probab=98.55 E-value=7.7e-07 Score=71.46 Aligned_cols=95 Identities=14% Similarity=0.111 Sum_probs=66.4
Q ss_pred CCCEEEEECCCCCc-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
++.+|||+|||.|. .+..+. .....|+|+|+++..++.|+++. ++++++|+++.++. .-..+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~-~~G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~-----~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK-ESGFDVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLE-----IYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH-HCCCEEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHH-----HHhcCCEE
Confidence 45789999999996 444554 44459999999999998887763 67899999987663 24679999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
.+.- ...++...+.++++.+. .-+++..-.
T Consensus 82 ysir-------pp~el~~~~~~la~~~~--~~~~i~~l~ 111 (134)
T PRK04148 82 YSIR-------PPRDLQPFILELAKKIN--VPLIIKPLS 111 (134)
T ss_pred EEeC-------CCHHHHHHHHHHHHHcC--CCEEEEcCC
Confidence 7554 23445555666666554 445555333
No 183
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=2e-07 Score=74.75 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=60.7
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
.+..++|||||.|.........+...++|+||++++++.++++..+.. .++.+.++|+.+..+ ..+.||.++
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfE--vqidlLqcdildle~------~~g~fDtav 119 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFE--VQIDLLQCDILDLEL------KGGIFDTAV 119 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhh--hhhheeeeeccchhc------cCCeEeeEE
Confidence 688999999999954434444467789999999999999999887653 346889999988665 458999998
Q ss_pred eccc
Q 021467 111 CFQH 114 (312)
Q Consensus 111 ~~~~ 114 (312)
.+..
T Consensus 120 iNpp 123 (185)
T KOG3420|consen 120 INPP 123 (185)
T ss_pred ecCC
Confidence 8764
No 184
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.54 E-value=9.3e-07 Score=83.77 Aligned_cols=108 Identities=14% Similarity=0.174 Sum_probs=79.6
Q ss_pred CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
+.+|||++||+|.....++.. +..+|+++|+++.+++.++++.+.++.. .+.+.++|+... + . ....||+|.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~-l----~-~~~~fD~V~ 130 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANAL-L----H-EERKFDVVD 130 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHH-H----h-hcCCCCEEE
Confidence 468999999999888877654 5568999999999999999998776532 356788887431 1 1 135799998
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~ 154 (312)
+.- . .+ ...++....+.+++||++.++.-|...+..
T Consensus 131 lDP-~----Gs---~~~~l~~al~~~~~~gilyvSAtD~~~L~g 166 (382)
T PRK04338 131 IDP-F----GS---PAPFLDSAIRSVKRGGLLCVTATDTAPLCG 166 (382)
T ss_pred ECC-C----CC---cHHHHHHHHHHhcCCCEEEEEecCchhhcC
Confidence 753 1 11 345677767788999999999777765533
No 185
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.49 E-value=4.8e-07 Score=77.48 Aligned_cols=91 Identities=14% Similarity=0.183 Sum_probs=56.3
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
++...|.|+|||.+..+... . ....|...|+-+. + -..+.+|+...|+ ++++.|++
T Consensus 71 ~~~~viaD~GCGdA~la~~~-~-~~~~V~SfDLva~-----------n-----~~Vtacdia~vPL------~~~svDv~ 126 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAV-P-NKHKVHSFDLVAP-----------N-----PRVTACDIANVPL------EDESVDVA 126 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH----S---EEEEESS-S-----------S-----TTEEES-TTS-S--------TT-EEEE
T ss_pred CCCEEEEECCCchHHHHHhc-c-cCceEEEeeccCC-----------C-----CCEEEecCccCcC------CCCceeEE
Confidence 35679999999999555332 2 2237999999642 1 1267899999888 78999998
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
++..+|-. .+...+++++.|+|||||.+.+.-..+
T Consensus 127 VfcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 127 VFCLSLMG-----TNWPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp EEES---S-----S-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred EEEhhhhC-----CCcHHHHHHHHheeccCcEEEEEEecc
Confidence 88776543 246789999999999999999984433
No 186
>PLN02823 spermine synthase
Probab=98.49 E-value=1.6e-06 Score=80.66 Aligned_cols=111 Identities=16% Similarity=0.135 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~---~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
...+||.||+|.|+.+..+++. +..+++.+|+++++++.|++.+.... ...+++++.+|.... +....++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~-----L~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAE-----LEKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHH-----HhhCCCCc
Confidence 4578999999999888777765 46789999999999999998875321 124588899987652 12235789
Q ss_pred eEEEeccchhh--hcCCHHHHHHHHH-HHHhccCCCcEEEEEe
Q 021467 107 DLVCCFQHLQM--CFETEERARRLLQ-NVSSLLKPGGYFLGIT 146 (312)
Q Consensus 107 D~V~~~~~lh~--~~~~~~~~~~~l~-~i~~~LkpGG~~i~~~ 146 (312)
|+|++-..=.. .....---.++++ .+.+.|+|||+++...
T Consensus 178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 99998632100 0000001356787 8999999999998763
No 187
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.48 E-value=1.2e-06 Score=80.40 Aligned_cols=97 Identities=19% Similarity=0.179 Sum_probs=84.1
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
-...+|+|.|.|+.+..++. .+.++.|++.....+..++..+. .+ ++.+.+|.... . .+-|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~--------P~~daI~m 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-T--------PKGDAIWM 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-C--------CCcCeEEE
Confidence 37899999999988888777 66689999999999998888885 44 77888998875 3 34569999
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
++.+|+ .+.++...+|+|+.+.|+|||.+++.
T Consensus 243 kWiLhd--wtDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 243 KWILHD--WTDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred Eeeccc--CChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 999999 88999999999999999999999987
No 188
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.46 E-value=3.7e-07 Score=78.73 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=73.5
Q ss_pred HHhcCCCCEEEEECCCCCccHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCC
Q 021467 26 KIYSHPYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN 104 (312)
Q Consensus 26 ~~~~~~~~~VLDlGCG~G~~l~~~~~-~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~ 104 (312)
.....++..|||+.||-|.++...++ .+...|+++|+++.+++.+++..+.++....+..+++|+.... ...
T Consensus 96 ~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~-------~~~ 168 (200)
T PF02475_consen 96 ANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL-------PEG 168 (200)
T ss_dssp HTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----------TT
T ss_pred HhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc-------Ccc
Confidence 34466899999999999999998876 3566899999999999999999998877777899999986633 257
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (312)
Q Consensus 105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i 143 (312)
.||-|++...-+ ...+|..+.+++++||++-
T Consensus 169 ~~drvim~lp~~--------~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 169 KFDRVIMNLPES--------SLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp -EEEEEE--TSS--------GGGGHHHHHHHEEEEEEEE
T ss_pred ccCEEEECChHH--------HHHHHHHHHHHhcCCcEEE
Confidence 899998876322 3456888888999998763
No 189
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.45 E-value=3e-06 Score=69.81 Aligned_cols=107 Identities=16% Similarity=0.093 Sum_probs=84.8
Q ss_pred CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.+.-||++|.|+|....+++.. ....++.++.|++......+++.. +.++.+|+.+....... .+...||.
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~------~~ii~gda~~l~~~l~e-~~gq~~D~ 120 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG------VNIINGDAFDLRTTLGE-HKGQFFDS 120 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC------ccccccchhhHHHHHhh-cCCCeeee
Confidence 5678999999999988888877 456899999999999999999876 55889998775421111 14578999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
|+|.-.+.. .......+.++.+...|++||.++-.+
T Consensus 121 viS~lPll~--~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 121 VISGLPLLN--FPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred EEecccccc--CcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 999776655 456667889999999999999998663
No 190
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.39 E-value=4e-06 Score=79.97 Aligned_cols=133 Identities=20% Similarity=0.260 Sum_probs=101.2
Q ss_pred CCCcchHHhHHHHHH-HHHHHHhcCCCC-EEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEE
Q 021467 7 PRSELTHHRLYEFAK-TALIKIYSHPYV-TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAE 84 (312)
Q Consensus 7 ~R~~~~~~~~~n~vk-~~li~~~~~~~~-~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~ 84 (312)
+|...+...+-.|+. +..|..+..+.. ++|-+|||+-.....+.+.+...++.+|+|+..++....+.... .....
T Consensus 22 ~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~ 99 (482)
T KOG2352|consen 22 PRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQ 99 (482)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceE
Confidence 344344444444432 345555666666 99999999998777777778999999999999999988887522 23478
Q ss_pred EEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHH------HHHHHHHHHHhccCCCcEEEEEec
Q 021467 85 FFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEE------RARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 85 f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~------~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
+...|+....+ ++.+||+|+.-..++..+.++. .....+.+++++|++||+++..+.
T Consensus 100 ~~~~d~~~l~f------edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 100 MVEMDMDQLVF------EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred EEEecchhccC------CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 88999988888 7899999999999988776654 345789999999999999886633
No 191
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.38 E-value=2.1e-06 Score=84.41 Aligned_cols=117 Identities=14% Similarity=0.080 Sum_probs=86.4
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.+..+||||||.|..+..++.. +...++|+|++...+..|.++....+. .++.+++.|+.. +...+ +++++|.|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~--~~~~~--~~~sv~~i 421 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDL--ILNDL--PNNSLDGI 421 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHH--HHHhc--CcccccEE
Confidence 4678999999999999888876 556899999999999998888766543 346677766432 11122 46889999
Q ss_pred Eeccch------hhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHH
Q 021467 110 CCFQHL------QMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWA 154 (312)
Q Consensus 110 ~~~~~l------h~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~ 154 (312)
.+.|.= |+ ...--...+++.+++.|||||.+.+.|-+.+....
T Consensus 422 ~i~FPDPWpKkrh~--krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~ 470 (506)
T PRK01544 422 YILFPDPWIKNKQK--KKRIFNKERLKILQDKLKDNGNLVFASDIENYFYE 470 (506)
T ss_pred EEECCCCCCCCCCc--cccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 998862 22 22223478899999999999999988777655433
No 192
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.37 E-value=4.6e-06 Score=80.95 Aligned_cols=114 Identities=12% Similarity=0.037 Sum_probs=81.2
Q ss_pred CCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
.++.+|||+|||.|+=+..++.. ....+++.|+++.-++..+++++..+. ..+.....|.....- . ....||
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~--~---~~~~fD 185 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGA--A---LPETFD 185 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhh--h---chhhcC
Confidence 48899999999999977777654 345899999999999999999887653 236777778654221 1 235799
Q ss_pred EEEe----ccc--hhhh-----cCCH-------HHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 108 LVCC----FQH--LQMC-----FETE-------ERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 108 ~V~~----~~~--lh~~-----~~~~-------~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
.|++ +.. ++.- ..+. ....++|.++.++|||||+++-+|..-
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 9984 321 1110 0111 234788999999999999999886553
No 193
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.36 E-value=1.8e-06 Score=79.67 Aligned_cols=115 Identities=19% Similarity=0.181 Sum_probs=74.5
Q ss_pred CCCEEEEECCCCCccHHHHHH--------cCCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCchhhhhhh
Q 021467 31 PYVTVCDLYCGAGVDVDKWET--------ALIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQE 101 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~--------~~~~~v~giDis~~~i~~a~~r~~~~~~~~-~~~f~~~D~~~~~~~~~~~~ 101 (312)
++.+|||.+||+|+++..... ....+++|+|+++.++..|+-+..-.+... ...+..+|....+...
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~---- 121 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFI---- 121 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCT----
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccc----
Confidence 566899999999998876654 245689999999999999987764333211 1357788876544311
Q ss_pred cCCceeEEEeccchhhh------cC-----------CHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 102 KANQADLVCCFQHLQMC------FE-----------TEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 102 ~~~~fD~V~~~~~lh~~------~~-----------~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
....||+|+++-.+-.. .. ....--.++..+.+.|++||++.+.+|++
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 24789999996543221 00 01112348899999999999999998876
No 194
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.34 E-value=5.5e-07 Score=80.21 Aligned_cols=98 Identities=24% Similarity=0.334 Sum_probs=79.6
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
.+..+||+|||.|-.+.. .+...++|.|++...+.-|++.-. .....+|+...+. .+.+||.++
T Consensus 45 ~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~~-------~~~~~ad~l~~p~------~~~s~d~~l 108 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSGG-------DNVCRADALKLPF------REESFDAAL 108 (293)
T ss_pred CcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCCC-------ceeehhhhhcCCC------CCCccccch
Confidence 578999999999943322 144579999999988877765432 1456788888777 678999999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+..++|| +.+......+++++.++|||||..++.
T Consensus 109 siavihh-lsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 109 SIAVIHH-LSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhhhhhh-hhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 9999998 788999999999999999999998777
No 195
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.34 E-value=8.4e-06 Score=64.88 Aligned_cols=102 Identities=24% Similarity=0.247 Sum_probs=69.3
Q ss_pred EEEECCCCCccHHHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--CchhhhhhhcC-CceeEE
Q 021467 35 VCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQEKA-NQADLV 109 (312)
Q Consensus 35 VLDlGCG~G~~l~~~~~~~~--~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~--~~~~~~~~~~~-~~fD~V 109 (312)
++|+|||+|... .+..... ..++|+|+++.++..++..... .....+.+...|... .++ .. ..||++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF------EDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC------CCCCceeEE
Confidence 999999999643 2222222 3799999999999985555432 211115677777665 343 33 489999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
+....++... ....+.++.+.|+|+|.+++.....
T Consensus 124 -~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 124 -ISLLVLHLLP----PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred -eeeeehhcCC----HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5544333222 7888999999999999999886654
No 196
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.5e-06 Score=72.74 Aligned_cols=103 Identities=19% Similarity=0.125 Sum_probs=75.9
Q ss_pred HhcCCCCEEEEECCCCCccHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHhcC---------CCceEEEEEcCCCCCc
Q 021467 27 IYSHPYVTVCDLYCGAGVDVDKWET---ALIANYIGIDVATSGIGEARDTWENQR---------KNFIAEFFEADPCAEN 94 (312)
Q Consensus 27 ~~~~~~~~VLDlGCG~G~~l~~~~~---~~~~~v~giDis~~~i~~a~~r~~~~~---------~~~~~~f~~~D~~~~~ 94 (312)
..+.|+.+.||+|.|+|....-+.. ..+...+|||.-++.++.+++++...- ...+..++++|+....
T Consensus 78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~ 157 (237)
T KOG1661|consen 78 DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGY 157 (237)
T ss_pred HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccC
Confidence 3456899999999999965544432 234455999999999999998875421 1234788899987754
Q ss_pred hhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 95 ~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
. +..+||.|.|..+ ..+..+++...|+|||.+++-
T Consensus 158 ~------e~a~YDaIhvGAa----------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 158 A------EQAPYDAIHVGAA----------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred C------ccCCcceEEEccC----------ccccHHHHHHhhccCCeEEEe
Confidence 4 5689999999864 334566777799999999876
No 197
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.28 E-value=1.2e-06 Score=82.12 Aligned_cols=117 Identities=20% Similarity=0.173 Sum_probs=91.7
Q ss_pred HHHHHHHH---HhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch
Q 021467 19 FAKTALIK---IYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF 95 (312)
Q Consensus 19 ~vk~~li~---~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~ 95 (312)
|++...+. .-+.++..++|+|||-|+.......-+...++|+|.++..+.++...........+..++.+|+...++
T Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f 174 (364)
T KOG1269|consen 95 WIRHEGIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF 174 (364)
T ss_pred HHhhcchHHHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC
Confidence 55543333 334477789999999998888777667779999999999988887765544333345668888888777
Q ss_pred hhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+++.||.+.+..+..| ..+...+++++.++++|||+++.-
T Consensus 175 ------edn~fd~v~~ld~~~~----~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 175 ------EDNTFDGVRFLEVVCH----APDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred ------CccccCcEEEEeeccc----CCcHHHHHHHHhcccCCCceEEeH
Confidence 6899999999887666 666889999999999999999875
No 198
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.28 E-value=8.3e-07 Score=75.39 Aligned_cols=116 Identities=18% Similarity=0.126 Sum_probs=70.3
Q ss_pred CCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hhhcCC
Q 021467 31 PYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~----~~~~~~ 104 (312)
++.+||||||++||.+..++... ..+|+|+|+.+. ... ..+.++++|+.+...... +.....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~---~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPL---QNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS----TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccc---cceeeeecccchhhHHHhhhhhcccccc
Confidence 34899999999999988887765 579999999976 110 126677777765322221 211236
Q ss_pred ceeEEEeccchhhh-------cCCHHHHHHHHHHHHhccCCCcEEEEEecCh---hHHHHHHHH
Q 021467 105 QADLVCCFQHLQMC-------FETEERARRLLQNVSSLLKPGGYFLGITPDS---STIWAKYQK 158 (312)
Q Consensus 105 ~fD~V~~~~~lh~~-------~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~---~~l~~~~~~ 158 (312)
++|+|+|-.+.... +.+.......+.-+.+.|+|||.|++-+-.. ..+...+..
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~ 154 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKR 154 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHH
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHh
Confidence 99999997732211 1223334555566667899999999875333 345444443
No 199
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=1.2e-05 Score=69.62 Aligned_cols=107 Identities=10% Similarity=0.092 Sum_probs=83.4
Q ss_pred CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCcee
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD 107 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~fD 107 (312)
...++||||.=+|..+..|+.+ ..++|+++|++++..+.+.+.++..+...++.++++++.+ .+.+-++. ..++||
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e-sLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE-SLDELLADGESGTFD 151 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh-hHHHHHhcCCCCcee
Confidence 4579999999999888877765 4569999999999999998888877777789999998765 23222221 358999
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
.++.-.- .........++.++||+||.+++.
T Consensus 152 faFvDad-------K~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 152 FAFVDAD-------KDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEEccc-------hHHHHHHHHHHHhhcccccEEEEe
Confidence 9986542 333458889999999999999976
No 200
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.27 E-value=6e-06 Score=77.94 Aligned_cols=111 Identities=10% Similarity=0.073 Sum_probs=72.3
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh----------
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE---------- 101 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~---------- 101 (312)
+.+|||++||+|.....++. +..+|+|+|+++.+++.|+++...++.. +++|+++|+.+. + ..+..
T Consensus 207 ~~~vLDl~~G~G~~sl~la~-~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~-l-~~~~~~~~~~~~~~~ 282 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALAR-NFRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEF-T-QAMNGVREFNRLKGI 282 (362)
T ss_pred CCeEEEEeccccHHHHHHHh-hCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHH-H-HHHhhcccccccccc
Confidence 35799999999988886654 4569999999999999999998776542 589999998542 1 11110
Q ss_pred --cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467 102 --KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (312)
Q Consensus 102 --~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~ 156 (312)
...+||+|+.--. .. . -...+++.+.+ |+++++++ .|...+.+-+
T Consensus 283 ~~~~~~~D~v~lDPP-R~--G---~~~~~l~~l~~---~~~ivyvS-C~p~tlarDl 329 (362)
T PRK05031 283 DLKSYNFSTIFVDPP-RA--G---LDDETLKLVQA---YERILYIS-CNPETLCENL 329 (362)
T ss_pred cccCCCCCEEEECCC-CC--C---CcHHHHHHHHc---cCCEEEEE-eCHHHHHHHH
Confidence 0125899987654 11 1 12344444443 66666665 4445554434
No 201
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.27 E-value=4.1e-05 Score=68.86 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhcC-----CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc--CCCce------
Q 021467 16 LYEFAKTALIKIYSH-----PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ--RKNFI------ 82 (312)
Q Consensus 16 ~~n~vk~~li~~~~~-----~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~--~~~~~------ 82 (312)
.+.+|...|-+.+.. ...+||--|||-|+.+..++..+. .+.|.|.|--|+-..+-.+... ...+.
T Consensus 36 ~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~ 114 (270)
T PF07942_consen 36 CYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVH 114 (270)
T ss_pred HHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEeccee
Confidence 345566666555442 357999999999999999988877 8999999999986554433210 00111
Q ss_pred -------------------------------EEEEEcCCCCCchhhhhhhc--CCceeEEEeccchhhhcCCHHHHHHHH
Q 021467 83 -------------------------------AEFFEADPCAENFETQMQEK--ANQADLVCCFQHLQMCFETEERARRLL 129 (312)
Q Consensus 83 -------------------------------~~f~~~D~~~~~~~~~~~~~--~~~fD~V~~~~~lh~~~~~~~~~~~~l 129 (312)
.....+|..+ ..... .++||+|+..| ..++...+-..+
T Consensus 115 ~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e-----~y~~~~~~~~~d~VvT~F----FIDTA~Ni~~Yi 185 (270)
T PF07942_consen 115 SFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLE-----VYGPDENKGSFDVVVTCF----FIDTAENIIEYI 185 (270)
T ss_pred cccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEE-----ecCCcccCCcccEEEEEE----EeechHHHHHHH
Confidence 1111222111 11111 37999988877 567788899999
Q ss_pred HHHHhccCCCcEEEEE
Q 021467 130 QNVSSLLKPGGYFLGI 145 (312)
Q Consensus 130 ~~i~~~LkpGG~~i~~ 145 (312)
+.|.++|||||+.|=.
T Consensus 186 ~tI~~lLkpgG~WIN~ 201 (270)
T PF07942_consen 186 ETIEHLLKPGGYWINF 201 (270)
T ss_pred HHHHHHhccCCEEEec
Confidence 9999999999976643
No 202
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.25 E-value=4.9e-06 Score=71.71 Aligned_cols=117 Identities=14% Similarity=0.185 Sum_probs=83.4
Q ss_pred chHHhHHHHHHHHHHHHhcC-CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcC
Q 021467 11 LTHHRLYEFAKTALIKIYSH-PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEAD 89 (312)
Q Consensus 11 ~~~~~~~n~vk~~li~~~~~-~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D 89 (312)
...+-+..|++......... ...++|||||=+...... ..+.-.|+.||+.+. . -.+.+.|
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~----------~------~~I~qqD 91 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ----------H------PGILQQD 91 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCC----------C------CCceeec
Confidence 34555778877766543322 347999999975532221 234446999999862 1 2245667
Q ss_pred CCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcE-----EEEEecCh
Q 021467 90 PCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGY-----FLGITPDS 149 (312)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~-----~i~~~p~~ 149 (312)
..+.++.. ...++||+|+|..++.| ..+..+.-++++.+++.|+|+|. ++++.|.+
T Consensus 92 Fm~rplp~---~~~e~FdvIs~SLVLNf-VP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 92 FMERPLPK---NESEKFDVISLSLVLNF-VPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred cccCCCCC---CcccceeEEEEEEEEee-CCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 66655421 13579999999999998 56788899999999999999999 99998887
No 203
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.25 E-value=1.5e-05 Score=81.50 Aligned_cols=130 Identities=16% Similarity=0.083 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHh-c-CCCCEEEEECCCCCccHHHHHHc------------------------------------------
Q 021467 17 YEFAKTALIKIY-S-HPYVTVCDLYCGAGVDVDKWETA------------------------------------------ 52 (312)
Q Consensus 17 ~n~vk~~li~~~-~-~~~~~VLDlGCG~G~~l~~~~~~------------------------------------------ 52 (312)
+.-+...++... . .++..++|.+||+|..+...+..
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 334444444432 2 46789999999999877544321
Q ss_pred -CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHH
Q 021467 53 -LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQN 131 (312)
Q Consensus 53 -~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~ 131 (312)
...+++|+|+++.+++.|+.+....+....+.+.++|+.+..... ..++||+|+++-..-.-..+..+...+.+.
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~ 329 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----PKGPTGLVISNPPYGERLGEEPALIALYSQ 329 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----ccCCCCEEEECCCCcCccCchHHHHHHHHH
Confidence 012699999999999999999998876666899999987754310 235799999986644333445555556555
Q ss_pred HHhccC---CCcEEEEEecChh
Q 021467 132 VSSLLK---PGGYFLGITPDSS 150 (312)
Q Consensus 132 i~~~Lk---pGG~~i~~~p~~~ 150 (312)
+.+.|| +|+.+.+.+++..
T Consensus 330 lg~~lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 330 LGRRLKQQFGGWNAALFSSSPE 351 (702)
T ss_pred HHHHHHHhCCCCeEEEEeCCHH
Confidence 555554 8999988888764
No 204
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.23 E-value=5.8e-06 Score=78.06 Aligned_cols=106 Identities=9% Similarity=0.158 Sum_probs=80.7
Q ss_pred CEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 33 VTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 33 ~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
.+|||+.||+|.....++.. +..+|+++|+++++++.++++.+.++.. ++++++.|+...- .....+||+|.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l-----~~~~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVL-----RYRNRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHH-----HHhCCCCCEEE
Confidence 68999999999888888776 5679999999999999999999776532 4678888865421 11236799998
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l 152 (312)
.-- ... ...++..+.+.+++||.+.+|.-|...+
T Consensus 120 lDP-fGs-------~~~fld~al~~~~~~glL~vTaTD~~~L 153 (374)
T TIGR00308 120 IDP-FGT-------PAPFVDSAIQASAERGLLLVTATDTSAL 153 (374)
T ss_pred eCC-CCC-------cHHHHHHHHHhcccCCEEEEEecccHHh
Confidence 744 221 3468888889999999999996665443
No 205
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.22 E-value=1.3e-05 Score=75.39 Aligned_cols=112 Identities=10% Similarity=0.056 Sum_probs=71.7
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh------hc---
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ------EK--- 102 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~------~~--- 102 (312)
+.+|||++||+|.....+... ..+|+|+|++++|++.|+++...++.. +++|+++|+.+.. ..... ..
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~-~~~~~~~~~~~~~~~~ 274 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFT-QAMNGVREFRRLKGID 274 (353)
T ss_pred CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHH-HHHhhccccccccccc
Confidence 347999999999877765544 469999999999999999998877542 4889999985421 10000 00
Q ss_pred --CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467 103 --ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (312)
Q Consensus 103 --~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~ 156 (312)
...||+|+.--. +. . -...+++.+.+ |+++++++ .|...+.+-+
T Consensus 275 ~~~~~~d~v~lDPP-R~--G---~~~~~l~~l~~---~~~ivYvs-C~p~tlaRDl 320 (353)
T TIGR02143 275 LKSYNCSTIFVDPP-RA--G---LDPDTCKLVQA---YERILYIS-CNPETLKANL 320 (353)
T ss_pred cccCCCCEEEECCC-CC--C---CcHHHHHHHHc---CCcEEEEE-cCHHHHHHHH
Confidence 124899987654 22 1 12344444443 66666655 5555555444
No 206
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.21 E-value=1.2e-05 Score=79.74 Aligned_cols=117 Identities=14% Similarity=0.104 Sum_probs=74.3
Q ss_pred CCCEEEEECCCCCccHHHHHHcC---------CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh
Q 021467 31 PYVTVCDLYCGAGVDVDKWETAL---------IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE 101 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~---------~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~ 101 (312)
...+|||.|||+|+.+....... ...++|+|+++.++..|+.++...+ ...+...+.|.....+.. ...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~~~~i~~~d~l~~~~~~-~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LLEINVINFNSLSYVLLN-IES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CCCceeeecccccccccc-ccc
Confidence 34699999999999887665431 1478999999999999998876543 122444555533322100 001
Q ss_pred cCCceeEEEeccchhhh-cCCHH-----------------------------------------HHHHH-HHHHHhccCC
Q 021467 102 KANQADLVCCFQHLQMC-FETEE-----------------------------------------RARRL-LQNVSSLLKP 138 (312)
Q Consensus 102 ~~~~fD~V~~~~~lh~~-~~~~~-----------------------------------------~~~~~-l~~i~~~Lkp 138 (312)
..+.||+|+++-..--. ....+ ....+ +..+.++|++
T Consensus 109 ~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~lL~~ 188 (524)
T TIGR02987 109 YLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEIANK 188 (524)
T ss_pred ccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHhcCC
Confidence 23589999997653210 01000 01113 3567899999
Q ss_pred CcEEEEEecCh
Q 021467 139 GGYFLGITPDS 149 (312)
Q Consensus 139 GG~~i~~~p~~ 149 (312)
||++.+++|++
T Consensus 189 ~G~~~~I~P~s 199 (524)
T TIGR02987 189 NGYVSIISPAS 199 (524)
T ss_pred CCEEEEEEChH
Confidence 99999998887
No 207
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.20 E-value=1.6e-06 Score=75.05 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=80.1
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHH-HHhcCCCceEEEEEcCCCCC--chhhhhhhcCCcee
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDT-WENQRKNFIAEFFEADPCAE--NFETQMQEKANQAD 107 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r-~~~~~~~~~~~f~~~D~~~~--~~~~~~~~~~~~fD 107 (312)
.+.+|||.|.|-|..+...+.++..+|+-++.++..|+.|.-+ +...-....++.+.+|+.+. ++ .+.+||
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~------~D~sfD 207 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF------DDESFD 207 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC------Cccccc
Confidence 5899999999999888888888887999999999999988654 21111122478899998652 23 578999
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
+|+---. +.+.-++--.+++.+++.|+|||||.++=-+
T Consensus 208 aIiHDPP-RfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 208 AIIHDPP-RFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred eEeeCCC-ccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 9975322 1122334446889999999999999998543
No 208
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.19 E-value=8.1e-06 Score=74.49 Aligned_cols=80 Identities=16% Similarity=0.059 Sum_probs=61.3
Q ss_pred CCCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
.++..+||.+||.|+++..++... ..+|+|+|.+++|++.|+++... ..++.++++|..+.. ..+...-.++|
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~--~~l~~~~~~vD 92 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLK--EVLAEGLGKVD 92 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHH--HHHHcCCCccC
Confidence 477899999999999999998773 46999999999999999998755 235889999876632 22221112799
Q ss_pred EEEeccc
Q 021467 108 LVCCFQH 114 (312)
Q Consensus 108 ~V~~~~~ 114 (312)
.|++..+
T Consensus 93 gIl~DLG 99 (296)
T PRK00050 93 GILLDLG 99 (296)
T ss_pred EEEECCC
Confidence 9988654
No 209
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.16 E-value=5e-05 Score=64.34 Aligned_cols=113 Identities=15% Similarity=0.062 Sum_probs=83.3
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
.+.++||+-+|+|......+.++...++.+|.+..++...+++.+..+...++.++..|+.. +...+. ...+||+|.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~--~L~~~~-~~~~FDlVf 119 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR--ALKQLG-TREPFDLVF 119 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH--HHHhcC-CCCcccEEE
Confidence 58999999999998888888888999999999999999999998877655668888988862 211111 123599999
Q ss_pred eccchhhhcCCHHHHHHHHHH--HHhccCCCcEEEEEecCh
Q 021467 111 CFQHLQMCFETEERARRLLQN--VSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~--i~~~LkpGG~~i~~~p~~ 149 (312)
.--..+. .-.+ ....+.. -..+|+|||.+++-....
T Consensus 120 lDPPy~~--~l~~-~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 120 LDPPYAK--GLLD-KELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred eCCCCcc--chhh-HHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 9877663 2121 1222222 457899999999875543
No 210
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.16 E-value=6.7e-06 Score=73.44 Aligned_cols=113 Identities=12% Similarity=0.039 Sum_probs=76.5
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhhhcCC
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKAN 104 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~---~~~~~~f~~~D~~~~~~~~~~~~~~~ 104 (312)
.+...+||=||-|.|+.+..+++.. ..+++++||++..++.|++-+.... ...+++++.+|.... +.....
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~-----l~~~~~ 148 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKF-----LKETQE 148 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHH-----HHTSSS
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHH-----HHhccC
Confidence 3457899999999998888887664 6799999999999999998765421 123588888887441 221234
Q ss_pred -ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 105 -QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 105 -~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
+||+|++-..--......--.+.+++.+.++|+|||+++...
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 899998733210000000114788999999999999999875
No 211
>PRK00536 speE spermidine synthase; Provisional
Probab=98.15 E-value=1.9e-05 Score=70.81 Aligned_cols=98 Identities=10% Similarity=0.005 Sum_probs=72.4
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC---CCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQR---KNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~---~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
+...+||=+|.|.|+.++..++.+. +|+.+||++++++.|++-++... ...+++++.. +. ....++|
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--------~~~~~~f 140 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--------DLDIKKY 140 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--------hccCCcC
Confidence 3558999999999999999988764 99999999999999999554321 1123554431 10 1123789
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
|+|++-.. + -..+.+.+.++|+|||+++...
T Consensus 141 DVIIvDs~----~-----~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 141 DLIICLQE----P-----DIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred CEEEEcCC----C-----ChHHHHHHHHhcCCCcEEEECC
Confidence 99997642 1 2567899999999999999863
No 212
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.14 E-value=1.6e-05 Score=72.06 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=79.1
Q ss_pred CEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcC--C-CceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 33 VTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQR--K-NFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 33 ~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~--~-~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.+||-||-|.|+.+...++. ...+++.+||++..++.|++.+.... . ..+++.+..|.... +.....+||+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~-----v~~~~~~fDv 152 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEF-----LRDCEEKFDV 152 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHH-----HHhCCCcCCE
Confidence 59999999999999988877 46899999999999999999876533 1 24577777776441 2223458999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
|++-..=.-.-...---..+++.+.++|+++|+++...
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 99754211000000013789999999999999999883
No 213
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.13 E-value=1.4e-06 Score=83.27 Aligned_cols=102 Identities=23% Similarity=0.215 Sum_probs=63.5
Q ss_pred CEEEEECCCCCccHHHHHHcCCCeEEEE---eCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 33 VTVCDLYCGAGVDVDKWETALIANYIGI---DVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 33 ~~VLDlGCG~G~~l~~~~~~~~~~v~gi---Dis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
..+||+|||.|.+...++..+.. ...+ |..+..++.|-+|- ..+-+-..-....++ +++.||+|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~-t~s~a~~d~~~~qvqfaleRG------vpa~~~~~~s~rLPf------p~~~fDmv 185 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVT-TMSFAPNDEHEAQVQFALERG------VPAMIGVLGSQRLPF------PSNAFDMV 185 (506)
T ss_pred EEEEeccceeehhHHHHhhCCce-EEEcccccCCchhhhhhhhcC------cchhhhhhccccccC------Cccchhhh
Confidence 36999999999888877665542 2222 33334455554442 111111111122344 78999999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~ 150 (312)
.|.-++... +.. -..+|-++.|+|||||+|+.+.|..+
T Consensus 186 Hcsrc~i~W--~~~-~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 186 HCSRCLIPW--HPN-DGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred hcccccccc--hhc-ccceeehhhhhhccCceEEecCCccc
Confidence 999875441 111 23578999999999999999966543
No 214
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.13 E-value=1.4e-05 Score=70.76 Aligned_cols=77 Identities=13% Similarity=0.049 Sum_probs=65.2
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
+++...||++|.|+|..+.+++.++. +|+++++++.|+.+..+|.+......+.+.+++|....++ ..||.
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--------P~fd~ 126 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--------PRFDG 126 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--------cccce
Confidence 45889999999999988888877655 9999999999999999999887666679999999987654 56888
Q ss_pred EEeccc
Q 021467 109 VCCFQH 114 (312)
Q Consensus 109 V~~~~~ 114 (312)
++++-.
T Consensus 127 cVsNlP 132 (315)
T KOG0820|consen 127 CVSNLP 132 (315)
T ss_pred eeccCC
Confidence 887543
No 215
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=3.9e-05 Score=64.18 Aligned_cols=110 Identities=18% Similarity=0.272 Sum_probs=78.1
Q ss_pred CCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 32 YVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
..-+||||||+|.....+.+. +...+.++||++.+++...+..+.++. .++.+++|+.+. + ..++.|++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~-----l--~~~~VDvL 114 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSG-----L--RNESVDVL 114 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhh-----h--ccCCccEE
Confidence 467999999999766665544 556799999999999998888876653 366777776552 2 23778877
Q ss_pred Eeccch---------------hhh--cCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467 110 CCFQHL---------------QMC--FETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (312)
Q Consensus 110 ~~~~~l---------------h~~--~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~ 150 (312)
+-+-.. -|+ -...+-...++..+-..|.|.|.|+.....++
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 654321 111 12344467888899999999999998865553
No 216
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.08 E-value=8.3e-06 Score=67.85 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=53.2
Q ss_pred EEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 021467 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 34 ~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
.|+|+.||-||++..+++. ..+|+++|+++..++.|+.+.+-.+...++.|+++|..+..- .+. ....+|+|++.-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~--~~~-~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLK--RLK-SNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGG--GB-------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHh--hcc-ccccccEEEECC
Confidence 6999999999999999876 458999999999999999999887766679999999866211 111 011289998743
No 217
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.07 E-value=2.6e-05 Score=72.23 Aligned_cols=107 Identities=17% Similarity=0.073 Sum_probs=87.6
Q ss_pred HHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCC
Q 021467 25 IKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKAN 104 (312)
Q Consensus 25 i~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~ 104 (312)
+.....+|.+|||+=+|-|.++...+..+...|+++|+++.+++..+++.+.|+....+..+++|+..... ..+
T Consensus 182 va~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~------~~~ 255 (341)
T COG2520 182 VAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP------ELG 255 (341)
T ss_pred HHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh------ccc
Confidence 33445579999999999999999988887666999999999999999999988877778999999977544 237
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
.+|-|++...- ....++....+.+++||++-.-
T Consensus 256 ~aDrIim~~p~--------~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 256 VADRIIMGLPK--------SAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred cCCEEEeCCCC--------cchhhHHHHHHHhhcCcEEEEE
Confidence 89999877632 2456777888889999998766
No 218
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.05 E-value=6.2e-05 Score=65.24 Aligned_cols=109 Identities=21% Similarity=0.227 Sum_probs=63.5
Q ss_pred cCCCCEEEEECCCCCccHHHHHH-cCCCeEEEEeCChHHHHHHHHHHHh-------cC-CCceEEEEEcCCCCCchhhhh
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWET-ALIANYIGIDVATSGIGEARDTWEN-------QR-KNFIAEFFEADPCAENFETQM 99 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~-~~~~~v~giDis~~~i~~a~~r~~~-------~~-~~~~~~f~~~D~~~~~~~~~~ 99 (312)
+.++...+|||||.|..+...+. .+..+.+||++.+...+.|....+. .+ ...++++..+|..+.+....+
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~ 119 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI 119 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh
Confidence 45789999999999976654443 3677799999999988877653322 12 134688889998775542211
Q ss_pred hhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 100 QEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 100 ~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
-...|+|+++.. +|. +++...|.+....||+|-++|-+
T Consensus 120 ---~s~AdvVf~Nn~---~F~--~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 120 ---WSDADVVFVNNT---CFD--PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp ---GHC-SEEEE--T---TT---HHHHHHHHHHHTTS-TT-EEEES
T ss_pred ---hcCCCEEEEecc---ccC--HHHHHHHHHHHhcCCCCCEEEEC
Confidence 135799999874 332 33555667788889999887654
No 219
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=0.0001 Score=63.34 Aligned_cols=119 Identities=17% Similarity=0.126 Sum_probs=80.8
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~ 104 (312)
+.++.+|+|||+-.|+-+....+. ....|+|+|+.+-- .. ..+.++++|++..+....+.. ...
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------~~---~~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------PI---PGVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------cC---CCceEEeeeccCccHHHHHHHHcCCC
Confidence 458899999999999877766554 22359999998631 11 128999999998776544432 234
Q ss_pred ceeEEEeccch--------hhhcCCHHHHHHHHHHHHhccCCCcEEEEE---ecChhHHHHHHHHhH
Q 021467 105 QADLVCCFQHL--------QMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV 160 (312)
Q Consensus 105 ~fD~V~~~~~l--------h~~~~~~~~~~~~l~~i~~~LkpGG~~i~~---~p~~~~l~~~~~~~~ 160 (312)
++|+|++-.+- ++ ..+..-...++.-+..+|+|||.|++- .-+.+.+++.+++..
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh-~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F 176 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDH-ARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLF 176 (205)
T ss_pred CcceEEecCCCCcCCCccccH-HHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhh
Confidence 57999985542 22 122344566677778899999999977 444466666666543
No 220
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.97 E-value=0.0001 Score=60.11 Aligned_cols=106 Identities=22% Similarity=0.285 Sum_probs=68.0
Q ss_pred CCCCEEEEECCCCCccHHHHHH-----cCCCeEEEEeCChHHHHHHHHHHHhcCC--CceEEEEEcCCCCCchhhhhhhc
Q 021467 30 HPYVTVCDLYCGAGVDVDKWET-----ALIANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQMQEK 102 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~-----~~~~~v~giDis~~~i~~a~~r~~~~~~--~~~~~f~~~D~~~~~~~~~~~~~ 102 (312)
.+..+|+|+|||.|.....++. ....+|+|+|.++..++.|.++.+.... .....+..++..... .
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 96 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-------S 96 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-------c
Confidence 4678999999999976666666 4567999999999999999998876542 123455555443321 1
Q ss_pred CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhH
Q 021467 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSST 151 (312)
Q Consensus 103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~ 151 (312)
....++++ ++|-+ .+. ...+++...+ ++-.+++..|....
T Consensus 97 ~~~~~~~v---gLHaC-G~L--s~~~l~~~~~---~~~~~l~~vpCCyh 136 (141)
T PF13679_consen 97 SDPPDILV---GLHAC-GDL--SDRALRLFIR---PNARFLVLVPCCYH 136 (141)
T ss_pred cCCCeEEE---Eeecc-cch--HHHHHHHHHH---cCCCEEEEcCCccc
Confidence 35667776 45542 222 2334444444 66677777776643
No 221
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.97 E-value=6.4e-05 Score=68.22 Aligned_cols=119 Identities=16% Similarity=0.133 Sum_probs=76.3
Q ss_pred CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
...+|||+|||.|.-+...... ...+++++|.|+.|++.++.-.+.......... ..+...... +....|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~------~~~~~DL 105 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEW-RRVLYRDFL------PFPPDDL 105 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchh-hhhhhcccc------cCCCCcE
Confidence 3469999999999544333221 466899999999999999887654321100101 111111000 1233499
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE---ecChhHHHHHHHHhH
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV 160 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~---~p~~~~l~~~~~~~~ 160 (312)
|++.++|-- +.+ .....+++++.+.+.+ +++++ +|.....+..++..+
T Consensus 106 vi~s~~L~E-L~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 106 VIASYVLNE-LPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQL 156 (274)
T ss_pred EEEehhhhc-CCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHH
Confidence 999999886 344 7788889988888876 77777 555566666666544
No 222
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=0.00017 Score=67.85 Aligned_cols=124 Identities=17% Similarity=0.146 Sum_probs=83.9
Q ss_pred HHHHHHhcC--CCCEEEEECCCCCccHHHHHHcC---CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467 22 TALIKIYSH--PYVTVCDLYCGAGVDVDKWETAL---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (312)
Q Consensus 22 ~~li~~~~~--~~~~VLDlGCG~G~~l~~~~~~~---~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~ 96 (312)
|.+....+. ++.+|||+|++.|+=+..++... ...|+++|+++.-++..+++.+..+... +...+.|.....-.
T Consensus 145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~ 223 (355)
T COG0144 145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAEL 223 (355)
T ss_pred HHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEeccccccccc
Confidence 444444443 78999999999999777766552 3457999999999999999988776433 56677776542210
Q ss_pred hhhhhcCCceeEEEeccc------hhhh-----cCC-------HHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 97 TQMQEKANQADLVCCFQH------LQMC-----FET-------EERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~------lh~~-----~~~-------~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
.. ...+||.|++-.. ++-- -.+ ..-+.++|.+..+.|||||.++-+|..-
T Consensus 224 --~~-~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 224 --LP-GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred --cc-ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 00 1236999987321 2100 011 1335788999999999999999886554
No 223
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.94 E-value=0.00013 Score=62.24 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCCC-EEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 021467 20 AKTALIKIYSHPYV-TVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET 97 (312)
Q Consensus 20 vk~~li~~~~~~~~-~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~ 97 (312)
+-+..+-.+++... +++|+|+|.|--...++-. +..+++.+|....-+.-.+.-....+.. +++.++..+.+ ..
T Consensus 36 ~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~-~~-- 111 (184)
T PF02527_consen 36 LDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE-PE-- 111 (184)
T ss_dssp HHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH-TT--
T ss_pred HHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc-cc--
Confidence 33444445555444 8999999999543333322 5568999999998777666665554432 38888887765 11
Q ss_pred hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE-ecCh
Q 021467 98 QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDS 149 (312)
Q Consensus 98 ~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~-~p~~ 149 (312)
...+||+|++...-. +..++.-+...|++||.++.. .++.
T Consensus 112 ----~~~~fd~v~aRAv~~--------l~~l~~~~~~~l~~~G~~l~~KG~~~ 152 (184)
T PF02527_consen 112 ----YRESFDVVTARAVAP--------LDKLLELARPLLKPGGRLLAYKGPDA 152 (184)
T ss_dssp ----TTT-EEEEEEESSSS--------HHHHHHHHGGGEEEEEEEEEEESS--
T ss_pred ----cCCCccEEEeehhcC--------HHHHHHHHHHhcCCCCEEEEEcCCCh
Confidence 468999999887322 567788899999999999977 4444
No 224
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.91 E-value=0.00027 Score=66.17 Aligned_cols=119 Identities=17% Similarity=0.115 Sum_probs=86.5
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCC---------------------------------C-------eEEEEeCChHHHH
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALI---------------------------------A-------NYIGIDVATSGIG 68 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~---------------------------------~-------~v~giDis~~~i~ 68 (312)
..++..++|-=||+|..+...+.... . .++|+|+++.+|+
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 34667899999999977654433210 1 3789999999999
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHH----HHHHHHHHHHhccCCCcEEEE
Q 021467 69 EARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEE----RARRLLQNVSSLLKPGGYFLG 144 (312)
Q Consensus 69 ~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~----~~~~~l~~i~~~LkpGG~~i~ 144 (312)
.|+.+....+....++|.++|+....- +...+|+|+|+-..---+.+.. -.+.+.+.+++.++--+.+++
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~------~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~ 342 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKE------PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVF 342 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCC------CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 999999998888889999999987543 2268999999865322224442 235666777788888888888
Q ss_pred EecChhHHH
Q 021467 145 ITPDSSTIW 153 (312)
Q Consensus 145 ~~p~~~~l~ 153 (312)
++...-...
T Consensus 343 tt~e~~~~~ 351 (381)
T COG0116 343 TTSEDLLFC 351 (381)
T ss_pred EccHHHHHH
Confidence 876654433
No 225
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00033 Score=62.23 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=87.4
Q ss_pred hcCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467 28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (312)
Q Consensus 28 ~~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~ 105 (312)
-+.|+.+||+-|.|+|.....+++. +.++++-+|+-..-.+.|++-++..+....+++.+-|++...+.. +...
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~----ks~~ 177 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI----KSLK 177 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc----cccc
Confidence 3569999999999999887777765 567999999999999999999998887778999999999877632 3578
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCc-EEEEEecChhHHH
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDSSTIW 153 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG-~~i~~~p~~~~l~ 153 (312)
+|.|+.-. ...-.++-.+.++||.+| +|+...|.-+.+-
T Consensus 178 aDaVFLDl---------PaPw~AiPha~~~lk~~g~r~csFSPCIEQvq 217 (314)
T KOG2915|consen 178 ADAVFLDL---------PAPWEAIPHAAKILKDEGGRLCSFSPCIEQVQ 217 (314)
T ss_pred cceEEEcC---------CChhhhhhhhHHHhhhcCceEEeccHHHHHHH
Confidence 99986543 234456667777898876 5555566655543
No 226
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.80 E-value=0.00012 Score=70.55 Aligned_cols=114 Identities=18% Similarity=0.194 Sum_probs=78.9
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++.+|||+=||.|.+...++ ....+|+|+|+++++++.|+++.+.++... ++|+.+|+...... .. ....+|+|+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~--~~-~~~~~d~Vv 367 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPA--WW-EGYKPDVVV 367 (432)
T ss_pred CCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhh--cc-ccCCCCEEE
Confidence 56799999999998777775 456699999999999999999999887654 89999988664321 10 135789998
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHH
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~ 157 (312)
..-.=-- . -+.+++.+. .++|-.+++++ .|...+.+.+.
T Consensus 368 vDPPR~G--~----~~~~lk~l~-~~~p~~IvYVS-CNP~TlaRDl~ 406 (432)
T COG2265 368 VDPPRAG--A----DREVLKQLA-KLKPKRIVYVS-CNPATLARDLA 406 (432)
T ss_pred ECCCCCC--C----CHHHHHHHH-hcCCCcEEEEe-CCHHHHHHHHH
Confidence 7543111 1 124444444 45666666654 66666665554
No 227
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.00061 Score=61.71 Aligned_cols=109 Identities=15% Similarity=0.159 Sum_probs=67.3
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHH--hcCCCceE-EEEEcCCCCC---------------
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE--NQRKNFIA-EFFEADPCAE--------------- 93 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~--~~~~~~~~-~f~~~D~~~~--------------- 93 (312)
..+||--|||.|+.+..++..+. ..-|-+.|--|+-...=.+. .....+.+ -|++.-....
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence 56899999999999998887766 66777888887754332221 11101111 1111111110
Q ss_pred ----------------chhhhhhh--cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 94 ----------------NFETQMQE--KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 94 ----------------~~~~~~~~--~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
++.+.... ..+.||+|+..| ..++....-..++.|.+.|||||+.+-.
T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcf----FIDTa~NileYi~tI~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCF----FIDTAHNILEYIDTIYKILKPGGVWINL 295 (369)
T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEE----EeechHHHHHHHHHHHHhccCCcEEEec
Confidence 01011111 235799887766 4566777899999999999999998744
No 228
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.76 E-value=0.00016 Score=64.52 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=62.2
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
..++.+|||||+|.|..+..+++... +|+++++++.++...+++.... .+++.+++|+...++... ..++.
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~---~n~~vi~~DaLk~d~~~l-----~~~~~ 98 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPY---DNLTVINGDALKFDFPSL-----AQPYK 98 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccc---cceEEEeCchhcCcchhh-----cCCCE
Confidence 44678999999999988888877655 7999999999999999987522 238999999998777210 16778
Q ss_pred EEeccchhh
Q 021467 109 VCCFQHLQM 117 (312)
Q Consensus 109 V~~~~~lh~ 117 (312)
|+++-..+-
T Consensus 99 vVaNlPY~I 107 (259)
T COG0030 99 VVANLPYNI 107 (259)
T ss_pred EEEcCCCcc
Confidence 887765443
No 229
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.75 E-value=0.00056 Score=59.40 Aligned_cols=106 Identities=14% Similarity=0.078 Sum_probs=73.4
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
+.++.+||-||.++|........- ..+.|++++.|+.+....-.-.+... ++--+..|+....-... --+..
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~---NIiPIl~DAr~P~~Y~~---lv~~V 144 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP---NIIPILEDARHPEKYRM---LVEMV 144 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST---TEEEEES-TTSGGGGTT---TS--E
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC---ceeeeeccCCChHHhhc---ccccc
Confidence 458999999999999877777653 35689999999977665544443322 26678889886433211 13589
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
|+|.+--+ ..++.+-++.|+...||+||.+++.+
T Consensus 145 DvI~~DVa------Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 145 DVIFQDVA------QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEE-S------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cEEEecCC------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 99987653 24578899999999999999999873
No 230
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.72 E-value=0.00033 Score=62.67 Aligned_cols=111 Identities=16% Similarity=0.167 Sum_probs=70.2
Q ss_pred CEEEEECCCC--CccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCCce
Q 021467 33 VTVCDLYCGA--GVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA 106 (312)
Q Consensus 33 ~~VLDlGCG~--G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~~f 106 (312)
...||||||- -+.....++. +..+|+-+|.++..+..++..+..+.. ....++++|+.+..- .+. .-.+-+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~--iL~~p~~~~~l 146 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEA--ILAHPEVRGLL 146 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHH--HHCSHHHHCC-
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHH--HhcCHHHHhcC
Confidence 4799999994 3355555543 667999999999999999998876542 247899999987431 111 001223
Q ss_pred e-----EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 107 D-----LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 107 D-----~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
| .|++...+|+ ..+.++...+++.+...|.||.++.++..
T Consensus 147 D~~rPVavll~~vLh~-v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 147 DFDRPVAVLLVAVLHF-VPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp -TTS--EEEECT-GGG-S-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred CCCCCeeeeeeeeecc-CCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 3 4566677887 46667899999999999999999999943
No 231
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.71 E-value=0.00015 Score=61.51 Aligned_cols=107 Identities=21% Similarity=0.107 Sum_probs=76.7
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
.+.+|||+|+|+|--....++.+...|+..|+.+..+...+-+.+.++ ..+.+...|+.. .+..||+|+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang--v~i~~~~~d~~g---------~~~~~Dl~L 147 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG--VSILFTHADLIG---------SPPAFDLLL 147 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc--ceeEEeeccccC---------CCcceeEEE
Confidence 578999999999966666666788899999999888887777777665 457888888765 357899999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l 152 (312)
.... |-+......++.-..++...|-.+++-.|....+
T Consensus 148 agDl----fy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l 185 (218)
T COG3897 148 AGDL----FYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL 185 (218)
T ss_pred eece----ecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 8884 3345566777774444444455555555655444
No 232
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.67 E-value=0.0015 Score=59.83 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=46.6
Q ss_pred CCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP 90 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~ 90 (312)
.++..++|.=||.||++..++.. +..+|+|+|.++.+++.|+++..... .++.+++++.
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF 78 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNF 78 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCH
Confidence 47789999999999999988875 34799999999999999999876531 1355555554
No 233
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.64 E-value=5.2e-05 Score=65.26 Aligned_cols=101 Identities=19% Similarity=0.142 Sum_probs=72.1
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
...|+|.-||.||.....+.... .|++||+++.-|..|+.+++-.+...++.|+++|..+. ...++.....+|+|..
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~--~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL--ASKLKADKIKYDCVFL 171 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHH--HHHHhhhhheeeeeec
Confidence 45899999999998888766554 89999999999999999998877767899999998653 2223223345778877
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhccCCC
Q 021467 112 FQHLQMCFETEERARRLLQNVSSLLKPG 139 (312)
Q Consensus 112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpG 139 (312)
+....+ .+....-+-.+...+.|.
T Consensus 172 sppwgg----p~y~~~~~~DL~~~~~p~ 195 (263)
T KOG2730|consen 172 SPPWGG----PSYLRADVYDLETHLKPM 195 (263)
T ss_pred CCCCCC----cchhhhhhhhhhhhcchh
Confidence 664433 333444455555555554
No 234
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.60 E-value=0.0025 Score=57.44 Aligned_cols=91 Identities=12% Similarity=0.051 Sum_probs=65.1
Q ss_pred HHHHHHHHHHh-cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467 18 EFAKTALIKIY-SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (312)
Q Consensus 18 n~vk~~li~~~-~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~ 96 (312)
..+...+++.. ..++..|||+|+|.|..+..++... .+++++|+++.+++..++++...+ +++++.+|+...+..
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~---~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNP---NVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCS---SEEEEES-TTTSCGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcc---cceeeecchhccccH
Confidence 33444444443 2378999999999999888887777 799999999999999999876332 389999999887663
Q ss_pred hhhhhcCCceeEEEeccch
Q 021467 97 TQMQEKANQADLVCCFQHL 115 (312)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~l 115 (312)
..+ ...-..|+++-..
T Consensus 92 ~~~---~~~~~~vv~NlPy 107 (262)
T PF00398_consen 92 DLL---KNQPLLVVGNLPY 107 (262)
T ss_dssp GHC---SSSEEEEEEEETG
T ss_pred Hhh---cCCceEEEEEecc
Confidence 211 2345566665544
No 235
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.60 E-value=0.00045 Score=64.98 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=66.3
Q ss_pred CEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc--------hh--hhhhhc
Q 021467 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN--------FE--TQMQEK 102 (312)
Q Consensus 33 ~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~--------~~--~~~~~~ 102 (312)
.+|||+-||.|.....++ ....+|+|+|+++++++.|++.++.++. .+++|+++++.+.. +. ..+...
T Consensus 198 ~~vlDlycG~G~fsl~la-~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~ 275 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLA-KKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKALAKAREFNRLKGIDLK 275 (352)
T ss_dssp TEEEEES-TTTCCHHHHH-CCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred CcEEEEeecCCHHHHHHH-hhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence 489999999997777764 4556999999999999999999988764 34899988764321 00 000112
Q ss_pred CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHH
Q 021467 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (312)
Q Consensus 103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~ 157 (312)
...+|+|+.--.=-- .+ +.+++.+.+ + ..++-...|+..+.+-+.
T Consensus 276 ~~~~d~vilDPPR~G--~~----~~~~~~~~~---~-~~ivYvSCnP~tlaRDl~ 320 (352)
T PF05958_consen 276 SFKFDAVILDPPRAG--LD----EKVIELIKK---L-KRIVYVSCNPATLARDLK 320 (352)
T ss_dssp CTTESEEEE---TT---SC----HHHHHHHHH---S-SEEEEEES-HHHHHHHHH
T ss_pred hcCCCEEEEcCCCCC--ch----HHHHHHHhc---C-CeEEEEECCHHHHHHHHH
Confidence 346899876432111 11 122333332 2 367777788877766664
No 236
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.58 E-value=0.00083 Score=60.67 Aligned_cols=108 Identities=15% Similarity=0.087 Sum_probs=64.7
Q ss_pred CEEEEECCCCCccHHHHHHc---CCCeEEEEeCChHHHHHHHHHHH-hcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 33 VTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWE-NQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 33 ~~VLDlGCG~G~~l~~~~~~---~~~~v~giDis~~~i~~a~~r~~-~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.+|+=||||.=-.+.-++.. ....++++|+++++++.|++-.+ ..+...++.|+++|..+... .-..||+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~------dl~~~Dv 195 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY------DLKEYDV 195 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G------G----SE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc------ccccCCE
Confidence 59999999986555554442 24579999999999999998776 33334458999999866433 2368999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
|+...... .+.+.....+.++.+.++||..++.-..++
T Consensus 196 V~lAalVg---~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 196 VFLAALVG---MDAEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp EEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred EEEhhhcc---cccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 98766332 245567889999999999999988774443
No 237
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.56 E-value=0.00055 Score=62.44 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=77.9
Q ss_pred CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
++.+|||+|+|.|+=+..++.. ....+++.|++..-+...+++.+..+.. .+.....|....... .....||.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~----~~~~~fd~ 159 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPK----KPESKFDR 159 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHH----HHTTTEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeecccccccc----ccccccch
Confidence 7889999999999977666554 3569999999999999999988776532 255555554432110 02346999
Q ss_pred EEeccc------hhh------hc--CC----HHHHHHHHHHHHhcc----CCCcEEEEEecCh
Q 021467 109 VCCFQH------LQM------CF--ET----EERARRLLQNVSSLL----KPGGYFLGITPDS 149 (312)
Q Consensus 109 V~~~~~------lh~------~~--~~----~~~~~~~l~~i~~~L----kpGG~~i~~~p~~ 149 (312)
|++-.. +.. .. .+ .....++|+++.+.+ ||||+++-+|..-
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 987221 111 00 00 133578899999999 9999999886544
No 238
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.56 E-value=2.8e-05 Score=66.25 Aligned_cols=93 Identities=19% Similarity=0.270 Sum_probs=65.6
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
..++||+|.|.|.... .......+|++.++|..|+.+.+++- +++- -..+-.+ .+-+||+|+|
T Consensus 113 ~~~lLDlGAGdGeit~-~m~p~feevyATElS~tMr~rL~kk~------ynVl-~~~ew~~---------t~~k~dli~c 175 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITL-RMAPTFEEVYATELSWTMRDRLKKKN------YNVL-TEIEWLQ---------TDVKLDLILC 175 (288)
T ss_pred CeeEEeccCCCcchhh-hhcchHHHHHHHHhhHHHHHHHhhcC------Ccee-eehhhhh---------cCceeehHHH
Confidence 4799999999994444 33445668999999999987765542 1110 0111111 2457999999
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhccCC-CcEEEEE
Q 021467 112 FQHLQMCFETEERARRLLQNVSSLLKP-GGYFLGI 145 (312)
Q Consensus 112 ~~~lh~~~~~~~~~~~~l~~i~~~Lkp-GG~~i~~ 145 (312)
...+.-++. .-.+|+.++.+|+| +|.+|+.
T Consensus 176 lNlLDRc~~----p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 176 LNLLDRCFD----PFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHhhcC----hHHHHHHHHHHhccCCCcEEEE
Confidence 998776555 67789999999999 8888876
No 239
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.55 E-value=0.0009 Score=58.03 Aligned_cols=109 Identities=11% Similarity=0.016 Sum_probs=70.9
Q ss_pred EEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 021467 35 VCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 35 VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
|.|+||-.|.....+.+.+ ..+++++|+++..++.|++..+..+...++++..+|-... + + +....|.|+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l----~-~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-L----K-PGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--------GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-c----C-CCCCCCEEEEec
Confidence 6899999997777777764 4579999999999999999999887777799999986541 2 1 223378777655
Q ss_pred chhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHH
Q 021467 114 HLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAK 155 (312)
Q Consensus 114 ~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~ 155 (312)
+ .-......|.+....++....|++.-.+....+++
T Consensus 75 M------GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~ 110 (205)
T PF04816_consen 75 M------GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRR 110 (205)
T ss_dssp E-------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHH
T ss_pred C------CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHH
Confidence 2 12346777888878887766777754444333333
No 240
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.54 E-value=0.00081 Score=56.63 Aligned_cols=109 Identities=17% Similarity=0.060 Sum_probs=66.5
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc-CCCCCchhhhhh--hcC
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA-DPCAENFETQMQ--EKA 103 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~-D~~~~~~~~~~~--~~~ 103 (312)
+.|+.+|||+||..|.-+.-..+. +.+.|.|||+-.- .+..+ +.++++ |+++......+. .++
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------~p~~G----a~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------EPPEG----ATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------cCCCC----cccccccccCCHHHHHHHHHhCCC
Confidence 348899999999999544333322 5568999999532 12223 566666 777754332221 146
Q ss_pred CceeEEEeccchhhh----c---CCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 104 NQADLVCCFQHLQMC----F---ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 104 ~~fD~V~~~~~lh~~----~---~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
.+.|+|++-.+-.-. . .+.+--..++.-....++|+|.|++-+-+.
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 889999985532110 0 112222344555567789999999987665
No 241
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.49 E-value=0.00083 Score=61.27 Aligned_cols=99 Identities=13% Similarity=0.098 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhc--CCCCEEEEECCCCCccHHHHH-HcCCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEEcCCCCC
Q 021467 18 EFAKTALIKIYS--HPYVTVCDLYCGAGVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAE 93 (312)
Q Consensus 18 n~vk~~li~~~~--~~~~~VLDlGCG~G~~l~~~~-~~~~~~v~giDis~~~i~~a~~r~~~~-~~~~~~~f~~~D~~~~ 93 (312)
-|+...|-.... +...++||||||....--.+. +....+++|.||++.+++.|++..+.+ +...++++....-..
T Consensus 87 ~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~- 165 (299)
T PF05971_consen 87 HWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPD- 165 (299)
T ss_dssp HHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST--
T ss_pred HHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcc-
Confidence 566555433211 125689999999874322221 224679999999999999999999888 655567776554222
Q ss_pred chhhhhhhcCCceeEEEeccchhh
Q 021467 94 NFETQMQEKANQADLVCCFQHLQM 117 (312)
Q Consensus 94 ~~~~~~~~~~~~fD~V~~~~~lh~ 117 (312)
.+...+......||+.+|+-.+|.
T Consensus 166 ~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 166 NIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp SSTTTSTT--S-EEEEEE-----S
T ss_pred ccchhhhcccceeeEEecCCcccc
Confidence 222222223568999999988776
No 242
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00078 Score=58.94 Aligned_cols=101 Identities=16% Similarity=0.090 Sum_probs=71.1
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
++..+||+|+.|||++.-+++.+..+|+|+|..-..+.. +++.... -+.+-..|+....... -.+..|+++
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kLR~d~r--V~~~E~tN~r~l~~~~----~~~~~d~~v 149 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KLRNDPR--VIVLERTNVRYLTPED----FTEKPDLIV 149 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hHhcCCc--EEEEecCChhhCCHHH----cccCCCeEE
Confidence 789999999999999999999999999999998765542 2222111 1333344444332211 134788999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
|--++-- +...|..+..+++|+|-++..+-
T Consensus 150 ~DvSFIS-------L~~iLp~l~~l~~~~~~~v~LvK 179 (245)
T COG1189 150 IDVSFIS-------LKLILPALLLLLKDGGDLVLLVK 179 (245)
T ss_pred EEeehhh-------HHHHHHHHHHhcCCCceEEEEec
Confidence 8774433 67789999999999999887643
No 243
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.44 E-value=0.00097 Score=61.68 Aligned_cols=94 Identities=14% Similarity=0.053 Sum_probs=64.4
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
..++.++|||||++||.+..+.+.+. +|++||.++- .......+ ++..+..|...... ..+.+|+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l-----~~~L~~~~---~V~h~~~d~fr~~p------~~~~vDw 273 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPM-----AQSLMDTG---QVEHLRADGFKFRP------PRKNVDW 273 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhc-----CHhhhCCC---CEEEEeccCcccCC------CCCCCCE
Confidence 35789999999999999998888776 9999996541 12222222 38888888766432 2578999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCC--cEEEEE
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPG--GYFLGI 145 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG--G~~i~~ 145 (312)
++|-.+. +.....+-+.++|..| ..+|++
T Consensus 274 vVcDmve--------~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 274 LVCDMVE--------KPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred EEEeccc--------CHHHHHHHHHHHHhcCcccEEEEE
Confidence 9987732 2455566677777655 344444
No 244
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.0011 Score=63.96 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=48.4
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC 91 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~ 91 (312)
+.+..+||++||+|.... .+.++..+|+|+++++++++.|+.....++. .+++|+++-+.
T Consensus 382 ~~~k~llDv~CGTG~igl-ala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~gqaE 441 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGL-ALARGVKRVIGVEISPDAVEDAEKNAQINGI-SNATFIVGQAE 441 (534)
T ss_pred CCCcEEEEEeecCCceeh-hhhccccceeeeecChhhcchhhhcchhcCc-cceeeeecchh
Confidence 367899999999994444 4456788999999999999999999887764 34899999443
No 245
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.00033 Score=57.60 Aligned_cols=121 Identities=15% Similarity=0.097 Sum_probs=80.1
Q ss_pred CCCEEEEECCCCCccHHHHHH--cCCCeEEEEeCChHHHHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 31 PYVTVCDLYCGAGVDVDKWET--ALIANYIGIDVATSGIGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~--~~~~~v~giDis~~~i~~a~~r~~~~~--~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
.+.+||++|.|--+.+..+.. +....|...|-++++++..++....+. ...++.....+... .+.+.....|
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~----aqsq~eq~tF 104 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG----AQSQQEQHTF 104 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh----hHHHHhhCcc
Confidence 457899999986545444433 356789999999999998877654431 01111111111111 1112235699
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHh
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN 159 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~ 159 (312)
|+|+|..++.. .+..+.+++.|.++|+|.|..++..|-...-.+++...
T Consensus 105 DiIlaADClFf----dE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de 153 (201)
T KOG3201|consen 105 DIILAADCLFF----DEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDE 153 (201)
T ss_pred cEEEeccchhH----HHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHH
Confidence 99999987655 56678899999999999999998888875555555443
No 246
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.37 E-value=0.00023 Score=54.69 Aligned_cols=100 Identities=18% Similarity=0.131 Sum_probs=43.5
Q ss_pred EEECCCCCccHHHHHHc----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 36 CDLYCGAGVDVDKWETA----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 36 LDlGCG~G~~l~~~~~~----~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
||+|+..|..+..++.. ...+++++|..+. .+.+++..+..+...+++++.+|..+ ....+. .+++|+|+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~--~l~~~~--~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPD--FLPSLP--DGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THH--HHHHHH--H--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHH--HHHHcC--CCCEEEEEE
Confidence 68999999776666543 2237999999995 22333333322223348999998743 212222 478999987
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
-.. |. .+.....+..+...|+|||++++-
T Consensus 76 Dg~-H~----~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 76 DGD-HS----YEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ES--------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCC-CC----HHHHHHHHHHHHHHcCCCeEEEEe
Confidence 662 22 456778899999999999998863
No 247
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.012 Score=50.26 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=83.5
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
+.++.+||=||..+|........- +...++|++.|+.+....-...+..+. +--+..|+....-... --+..|
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~N---i~PIL~DA~~P~~Y~~---~Ve~VD 147 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPN---IIPILEDARKPEKYRH---LVEKVD 147 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCC---ceeeecccCCcHHhhh---hccccc
Confidence 458999999999999888877654 446899999999998776665554332 5567788876432211 135689
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE--------ecChhHHHHHH
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI--------TPDSSTIWAKY 156 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~--------~p~~~~l~~~~ 156 (312)
+|.+-- --..+++-+..|+...||+||++++. +-++..++++-
T Consensus 148 viy~DV------AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~e 198 (231)
T COG1889 148 VIYQDV------AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDE 198 (231)
T ss_pred EEEEec------CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHH
Confidence 987644 23567888999999999999988766 45556666543
No 248
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.28 E-value=0.00046 Score=58.12 Aligned_cols=100 Identities=19% Similarity=0.197 Sum_probs=74.3
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
...+.|||.|+| .+...+.....+|++++.++.-.+.|.++..-++ ..+.+.+.+|+...++ ...|+|+|
T Consensus 33 ~d~~~DLGaGsG-iLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g-~~n~evv~gDA~~y~f--------e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSG-ILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG-DVNWEVVVGDARDYDF--------ENADVVIC 102 (252)
T ss_pred hhceeeccCCcc-hHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC-CcceEEEecccccccc--------cccceeHH
Confidence 478999999999 5555555567799999999999888888865443 2358899999988766 56899988
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (312)
Q Consensus 112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i 143 (312)
-.. .-++. .+.....+..+.+.||-+|.++
T Consensus 103 Eml-DTaLi-~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 103 EML-DTALI-EEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHh-hHHhh-cccccHHHHHHHHHhhcCCccc
Confidence 652 22222 3445567777888999888876
No 249
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.27 E-value=0.00091 Score=54.07 Aligned_cols=58 Identities=9% Similarity=-0.024 Sum_probs=45.0
Q ss_pred EEEEECCCCCccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC
Q 021467 34 TVCDLYCGAGVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA 92 (312)
Q Consensus 34 ~VLDlGCG~G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~ 92 (312)
+|||+|||.|..+..++.... .+++++|+++.+++.++++++.++.. ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 489999999977666655533 48999999999999999998776532 37777777655
No 250
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.25 E-value=0.0024 Score=55.00 Aligned_cols=106 Identities=19% Similarity=0.043 Sum_probs=71.3
Q ss_pred CCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.++.+||.+|-|-|-...+...+++.+-+-|+..++.++..+...-.. ..++....+--.+ ....+ +++.||-|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~WeD--vl~~L--~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGRWED--VLNTL--PDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc--ccceEEEecchHh--hhccc--cccCccee
Confidence 478999999999996666666667777788999999988776653221 1123333331111 11111 46789988
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
.---- -+.-++.+.+.+.+.++|||+|.|-..
T Consensus 174 ~yDTy----~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 174 YYDTY----SELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred Eeech----hhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 64321 134578899999999999999998754
No 251
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.18 E-value=0.0025 Score=51.63 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=58.5
Q ss_pred eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccch-----hhhcCCHHHHHHHHH
Q 021467 56 NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHL-----QMCFETEERARRLLQ 130 (312)
Q Consensus 56 ~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l-----h~~~~~~~~~~~~l~ 130 (312)
+|+|+||-+++|+.+++|.++.+...+++++..+=.. +...++ .+++|+|+-+.+. |-..-..+.-..+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~--l~~~i~--~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHEN--LDEYIP--EGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGG--GGGT----S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHH--HHhhCc--cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 5899999999999999999987655568888765332 322222 2589998765542 222233556678899
Q ss_pred HHHhccCCCcEEEEEe
Q 021467 131 NVSSLLKPGGYFLGIT 146 (312)
Q Consensus 131 ~i~~~LkpGG~~i~~~ 146 (312)
.+.++|+|||+++++.
T Consensus 77 ~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 77 AALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHEEEEEEEEEEE
T ss_pred HHHHhhccCCEEEEEE
Confidence 9999999999999884
No 252
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.08 E-value=0.013 Score=53.26 Aligned_cols=48 Identities=25% Similarity=0.250 Sum_probs=42.1
Q ss_pred CCCCEEEEECCCCCccHHHHHHcC--CCeEEEEeCChHHHHHHHHHHHhc
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETAL--IANYIGIDVATSGIGEARDTWENQ 77 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~~--~~~v~giDis~~~i~~a~~r~~~~ 77 (312)
.++...+|.--|.||.+..++... .++++|+|-++.+|+.|+++....
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~ 71 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF 71 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc
Confidence 478899999999999999998874 368999999999999999988653
No 253
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.06 E-value=0.0021 Score=55.43 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=59.2
Q ss_pred HHHHHHhcCCCCEEEEECCCCCccHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh
Q 021467 22 TALIKIYSHPYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE 96 (312)
Q Consensus 22 ~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~-----~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~ 96 (312)
+.||-+.- ...|+++|.-.||.+..|+.. ..++|+|+||.-.... +...+..+...+++++++|..+....
T Consensus 25 qeli~~~k--Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~~~~ 100 (206)
T PF04989_consen 25 QELIWELK--PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDPEIV 100 (206)
T ss_dssp HHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHH
T ss_pred HHHHHHhC--CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCHHHH
Confidence 34444433 479999999999988877542 4569999999643322 22233322223499999999886654
Q ss_pred hhhhhc--CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 97 TQMQEK--ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 97 ~~~~~~--~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
..+... ...-.+|+- .+-|. .+...+-|+....++.+|+++++.
T Consensus 101 ~~v~~~~~~~~~vlVil-Ds~H~----~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 101 DQVRELASPPHPVLVIL-DSSHT----HEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp HTSGSS----SSEEEEE-SS--------SSHHHHHHHHHHT--TT-EEEET
T ss_pred HHHHHhhccCCceEEEE-CCCcc----HHHHHHHHHHhCccCCCCCEEEEE
Confidence 333221 123334443 33232 233566677899999999999875
No 254
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.05 E-value=0.0076 Score=52.49 Aligned_cols=98 Identities=19% Similarity=0.070 Sum_probs=65.5
Q ss_pred CCEEEEECCCCCccHHHHH-HcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc-eeEE
Q 021467 32 YVTVCDLYCGAGVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ-ADLV 109 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~-~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~-fD~V 109 (312)
+.+++|||+|.|--...++ ..+..+++-+|....-+.-.+.-..+.+. .+++++++.+.+..- ... ||+|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~-------~~~~~D~v 139 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQ-------EKKQYDVV 139 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhccc-------ccccCcEE
Confidence 5899999999994333332 23444699999988776655555444332 127888887755331 223 9999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
++-... .+..++.-+..++|+||.++..
T Consensus 140 tsRAva--------~L~~l~e~~~pllk~~g~~~~~ 167 (215)
T COG0357 140 TSRAVA--------SLNVLLELCLPLLKVGGGFLAY 167 (215)
T ss_pred Eeehcc--------chHHHHHHHHHhcccCCcchhh
Confidence 987632 2566677788899999987643
No 255
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.05 E-value=0.0047 Score=54.67 Aligned_cols=106 Identities=18% Similarity=0.152 Sum_probs=68.1
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
+..+|+|||||-=-.+..|... ....|+|+||+..+++....-....+ ........|+.... +....|+.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~--~~~~~~v~Dl~~~~-------~~~~~Dla 175 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG--VPHDARVRDLLSDP-------PKEPADLA 175 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-------TTSEESEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC--CCcceeEeeeeccC-------CCCCcchh
Confidence 5789999999998788888765 34699999999999998888766544 23566677887754 35789999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
...=.+|- + +.+.+..--++...++.. .+++++|..
T Consensus 176 LllK~lp~-l--e~q~~g~g~~ll~~~~~~-~~vVSfPtr 211 (251)
T PF07091_consen 176 LLLKTLPC-L--ERQRRGAGLELLDALRSP-HVVVSFPTR 211 (251)
T ss_dssp EEET-HHH-H--HHHSTTHHHHHHHHSCES-EEEEEEES-
T ss_pred hHHHHHHH-H--HHHhcchHHHHHHHhCCC-eEEEecccc
Confidence 98887775 1 122222323444444432 566677764
No 256
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.99 E-value=0.0088 Score=55.49 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=77.0
Q ss_pred CCCEEEEECCCCCccHHHHHHcC-CCeEEEEeCChHHHHHHHHH--HHhcC----CCceEEEEEcCCCCCchhhhhhhcC
Q 021467 31 PYVTVCDLYCGAGVDVDKWETAL-IANYIGIDVATSGIGEARDT--WENQR----KNFIAEFFEADPCAENFETQMQEKA 103 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r--~~~~~----~~~~~~f~~~D~~~~~~~~~~~~~~ 103 (312)
...+||-+|.|.|--+..+.+.+ ..+++-+|++++||+.++.. ....+ ...+++.+..|+.+. ++...
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~w-----lr~a~ 363 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQW-----LRTAA 363 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHH-----HHhhc
Confidence 34589999999997777777765 78999999999999999843 22211 134578888887652 22235
Q ss_pred CceeEEEeccchhhhcCC--HHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 104 NQADLVCCFQHLQMCFET--EERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 104 ~~fD~V~~~~~lh~~~~~--~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
..||.|+.-..=-. -.+ .---.++..-+++.|+++|.+++..-+
T Consensus 364 ~~fD~vIVDl~DP~-tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 364 DMFDVVIVDLPDPS-TPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred ccccEEEEeCCCCC-CcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 68999987442000 000 111356788899999999999987433
No 257
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.95 E-value=0.0074 Score=55.41 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=42.3
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCC
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADP 90 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~ 90 (312)
..++..++|.--|.||.+..++.. +..+++|+|-++++++.|++++.... .++.+++++.
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~--~r~~~~~~~F 78 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD--DRFIFIHGNF 78 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC--TTEEEEES-G
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc--ceEEEEeccH
Confidence 347889999999999999999876 45899999999999999998876431 2355555554
No 258
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.92 E-value=0.0095 Score=51.42 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=64.5
Q ss_pred CCCEEEEECCCCCccHHHHH--H-cCCCeEEEEeCChHHHHHHHHHHHh-------------------------------
Q 021467 31 PYVTVCDLYCGAGVDVDKWE--T-ALIANYIGIDVATSGIGEARDTWEN------------------------------- 76 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~--~-~~~~~v~giDis~~~i~~a~~r~~~------------------------------- 76 (312)
...++.|-|||.|..+.-+- + .....|+|-||++++|+.|+++..-
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 45689999999997665332 2 2557899999999999998873310
Q ss_pred ----------cCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhh--cC---CHHHHHHHHHHHHhccCCCcE
Q 021467 77 ----------QRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMC--FE---TEERARRLLQNVSSLLKPGGY 141 (312)
Q Consensus 77 ----------~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~--~~---~~~~~~~~l~~i~~~LkpGG~ 141 (312)
.+-..+....++|+++........ .....|+|+.-...-.+ ++ +.+-..++|.+++.+| |++.
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~-~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vL-p~~s 208 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD-AGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVL-PERS 208 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH-TT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS--TT-
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhc-cCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhC-CCCc
Confidence 112345678899998855433332 23456999884432111 12 3456789999999999 5555
Q ss_pred EEEE
Q 021467 142 FLGI 145 (312)
Q Consensus 142 ~i~~ 145 (312)
++..
T Consensus 209 VV~v 212 (246)
T PF11599_consen 209 VVAV 212 (246)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5444
No 259
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.83 E-value=0.0096 Score=58.50 Aligned_cols=118 Identities=19% Similarity=0.194 Sum_probs=78.0
Q ss_pred CCCEEEEECCCCCccHHHHHHc---C--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA---L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~---~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~ 105 (312)
+..+|+|-+||+|+.+...... . ...++|.++.+.....|+-..--++....+....+|....+.... ....+.
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~-~~~~~~ 264 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDD-KDDKGK 264 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccc-cCCccc
Confidence 5679999999999988755442 2 246999999999999999887655543334555555544433211 112467
Q ss_pred eeEEEeccchh---h-----------------hcCCHHHH-HHHHHHHHhccCCCcEEEEEecCh
Q 021467 106 ADLVCCFQHLQ---M-----------------CFETEERA-RRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 106 fD~V~~~~~lh---~-----------------~~~~~~~~-~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
||.|+++..+- + .+...... ..+++.+...|+|||+.-+..|+.
T Consensus 265 ~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 265 FDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred eeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 99988864431 1 01112233 788999999999999666666655
No 260
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.75 E-value=0.00063 Score=55.52 Aligned_cols=57 Identities=25% Similarity=0.322 Sum_probs=50.5
Q ss_pred cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHhH
Q 021467 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKNV 160 (312)
Q Consensus 102 ~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~~ 160 (312)
.+++.|+|.+..++.| .+.+.-..+++.+++.|||||++-+..||...+...|+..+
T Consensus 44 ~dns~d~iyaeHvlEH--lt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~v 100 (185)
T COG4627 44 EDNSVDAIYAEHVLEH--LTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDV 100 (185)
T ss_pred CCcchHHHHHHHHHHH--HhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhh
Confidence 5789999999888877 56677889999999999999999999999999998888654
No 261
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.74 E-value=0.05 Score=50.82 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=32.0
Q ss_pred cCCceeEEEeccchhhhc------CC-----------------------------HHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 102 KANQADLVCCFQHLQMCF------ET-----------------------------EERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 102 ~~~~fD~V~~~~~lh~~~------~~-----------------------------~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
++++.|++.+..++|+.= .+ ..+...+|+.=++-|+|||++++++
T Consensus 104 P~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 183 (334)
T PF03492_consen 104 PSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPGGRMVLTF 183 (334)
T ss_dssp -TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccCcEEEEEE
Confidence 678999999999999861 00 1445667777778899999999984
Q ss_pred c
Q 021467 147 P 147 (312)
Q Consensus 147 p 147 (312)
+
T Consensus 184 ~ 184 (334)
T PF03492_consen 184 L 184 (334)
T ss_dssp E
T ss_pred e
Confidence 4
No 262
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.72 E-value=0.0052 Score=58.24 Aligned_cols=109 Identities=13% Similarity=0.131 Sum_probs=75.8
Q ss_pred CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~-~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
...+|||.=+|+|.-...|+.. +..+|+.-|+|+++++..+++.+.++... .++..+.|+... +......||
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~l-----l~~~~~~fD 123 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVL-----LYSRQERFD 123 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHH-----HCHSTT-EE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHH-----hhhccccCC
Confidence 3569999999999766666665 56799999999999999999998887655 577888886441 111357899
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l 152 (312)
+|=.- .-.....+|..+.+.++.||.+.+|.-|...+
T Consensus 124 ~IDlD--------PfGSp~pfldsA~~~v~~gGll~vTaTD~a~L 160 (377)
T PF02005_consen 124 VIDLD--------PFGSPAPFLDSALQAVKDGGLLCVTATDTAVL 160 (377)
T ss_dssp EEEE----------SS--HHHHHHHHHHEEEEEEEEEEE--HHHH
T ss_pred EEEeC--------CCCCccHhHHHHHHHhhcCCEEEEeccccccc
Confidence 99542 22336678999999999999999997666443
No 263
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.61 E-value=0.049 Score=47.32 Aligned_cols=113 Identities=11% Similarity=0.013 Sum_probs=80.2
Q ss_pred HHHhcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467 25 IKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA 103 (312)
Q Consensus 25 i~~~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~ 103 (312)
+..+++.+.++.|+||-.|.....+.+. ....+++.|+++..++.|.+..+.++...+++...+|... .+. .+
T Consensus 10 va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~-~l~-----~~ 83 (226)
T COG2384 10 VANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA-VLE-----LE 83 (226)
T ss_pred HHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc-ccC-----cc
Confidence 3456667777999999999777776665 5678999999999999999999988876667777777643 221 34
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (312)
Q Consensus 104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~ 150 (312)
..+|+|+...+ .-......|.+-.+.|+.=-+++. .|+..
T Consensus 84 d~~d~ivIAGM------GG~lI~~ILee~~~~l~~~~rlIL-QPn~~ 123 (226)
T COG2384 84 DEIDVIVIAGM------GGTLIREILEEGKEKLKGVERLIL-QPNIH 123 (226)
T ss_pred CCcCEEEEeCC------cHHHHHHHHHHhhhhhcCcceEEE-CCCCC
Confidence 57998877652 123356677777777764434444 56653
No 264
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.039 Score=51.39 Aligned_cols=123 Identities=15% Similarity=0.037 Sum_probs=72.8
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc---C--CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh---hhhh
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA---L--IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE---TQMQ 100 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~---~--~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~---~~~~ 100 (312)
++|+.+|||+|...|+-...++.. . ...|++-|++..-+..........+ .........|+...+-. ..-+
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCch
Confidence 348999999999999877666654 2 2379999999887776666553322 11133333333321110 0000
Q ss_pred hcCCceeEEEeccch------hh---hcCC----------HHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467 101 EKANQADLVCCFQHL------QM---CFET----------EERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (312)
Q Consensus 101 ~~~~~fD~V~~~~~l------h~---~~~~----------~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l 152 (312)
.....||-|.|--.. .. .+.. ..-.-.+|.+-.++||+||.++-+|..-+.+
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence 123578988872211 00 0000 1223567889999999999999997666443
No 265
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.39 E-value=0.028 Score=53.10 Aligned_cols=113 Identities=13% Similarity=0.024 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
++.||||+|+..||-....+.. ..+.+++.|.+..-+......+...+.. .......|....+- .. -.++||-
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~--~~--~~~~fDR 315 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPE--KE--FPGSFDR 315 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccc--cc--cCcccce
Confidence 7899999999999876665543 4558999999999999888888776532 23445566543221 00 1237998
Q ss_pred EEeccchhh------------------hcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 109 VCCFQHLQM------------------CFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 109 V~~~~~lh~------------------~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
|..-...-- +..-..-++++|.....++++||+++-+|..
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 875221100 0001223588899999999999999977443
No 266
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.039 Score=44.92 Aligned_cols=104 Identities=15% Similarity=0.066 Sum_probs=72.1
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
+..+.+|||+|.|+.....++.+...-+|+++++-.+..++-+.-..+...+..|..-|+...++ ..|..|+
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl--------~dy~~vv 143 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL--------RDYRNVV 143 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc--------cccceEE
Confidence 55789999999999888877777668899999998888777665444545567888888877666 3355554
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE-ecCh
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPDS 149 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~-~p~~ 149 (312)
...+ +.-+..+-..+..-+..|..++.. +|=.
T Consensus 144 iFga-------es~m~dLe~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 144 IFGA-------ESVMPDLEDKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred Eeeh-------HHHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence 3332 222444455566667778777765 4443
No 267
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.19 E-value=0.013 Score=50.08 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=63.9
Q ss_pred CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCC------CceEEEEEcCCCCCchhhhhhhcCC
Q 021467 32 YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK------NFIAEFFEADPCAENFETQMQEKAN 104 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~------~~~~~f~~~D~~~~~~~~~~~~~~~ 104 (312)
.-.+.|||||-|+.+..+... +...+.|.+|-...-+..++|+...+. -.++.....++.. +...+- ..+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk--~lpn~f-~kg 137 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK--FLPNFF-EKG 137 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh--hccchh-hhc
Confidence 457999999999999988765 556789999998888888888765331 0112333333322 100000 011
Q ss_pred cee-EEEeccchhhhc---CCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 105 QAD-LVCCFQHLQMCF---ETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 105 ~fD-~V~~~~~lh~~~---~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
+.+ ..++.---|.-- ...---..++.+..-+|++||.++.++
T Consensus 138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 111 112111122200 000112567888999999999998664
No 268
>PRK11524 putative methyltransferase; Provisional
Probab=95.93 E-value=0.026 Score=51.45 Aligned_cols=56 Identities=20% Similarity=0.137 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 021467 20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN 76 (312)
Q Consensus 20 vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~ 76 (312)
+...+|..+..++..|||--||+|..+... .....+++|+|++++.++.|++|+..
T Consensus 197 L~erlI~~~S~~GD~VLDPF~GSGTT~~AA-~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 197 LLKRIILASSNPGDIVLDPFAGSFTTGAVA-KASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCcHHHHHH-HHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 445667777789999999999999655544 44456899999999999999999864
No 269
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.82 E-value=0.022 Score=51.78 Aligned_cols=72 Identities=19% Similarity=0.106 Sum_probs=53.9
Q ss_pred EEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 021467 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 34 ~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
+|+|+.||.|+...-+...+...+.++|+++.+++..+.++.. ..+++|+.+..... ....+|+++..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~----~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKD----FIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhh----cCCCCCEEEeCC
Confidence 6999999999988888777887889999999998877776642 15677776654311 035699999877
Q ss_pred chh
Q 021467 114 HLQ 116 (312)
Q Consensus 114 ~lh 116 (312)
..+
T Consensus 71 PCq 73 (275)
T cd00315 71 PCQ 73 (275)
T ss_pred CCh
Confidence 543
No 270
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.65 E-value=0.034 Score=48.15 Aligned_cols=53 Identities=28% Similarity=0.307 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHH
Q 021467 19 FAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72 (312)
Q Consensus 19 ~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~ 72 (312)
-+...+|..+..++..|||.-||+|..+..... -..+++|+|++++..+.|++
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~-l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEE-LGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHH-TT-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHH-cCCeEEEEeCCHHHHHHhcC
Confidence 345567778888999999999999965555444 44589999999999998874
No 271
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.64 E-value=0.0078 Score=46.44 Aligned_cols=40 Identities=28% Similarity=0.566 Sum_probs=31.5
Q ss_pred ceeEEEeccc---hhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 105 QADLVCCFQH---LQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 105 ~fD~V~~~~~---lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
.||+|+|..+ +|. -...+.+..+++.+++.|+|||+||+-
T Consensus 1 ~yDvilclSVtkWIHL-n~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHL-NWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHH-HHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEe-cCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 4999999877 342 234677899999999999999999986
No 272
>PRK13699 putative methylase; Provisional
Probab=95.56 E-value=0.049 Score=48.00 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc
Q 021467 20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ 77 (312)
Q Consensus 20 vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~ 77 (312)
+...+|..+..++..|||--||+|..+...... ..+++|+|++++..+.|.+|+...
T Consensus 152 l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 152 SLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHH
Confidence 334567777789999999999999666655443 458999999999999999998753
No 273
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.52 E-value=0.0052 Score=59.05 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=81.3
Q ss_pred CCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
++.+|||.=|++|-....|++. +..++++-|.++.+++..+++.+.++....++-.+.|+...-.. .+.....||+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~--~~~~~~~FDv 186 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE--HPMVAKFFDV 186 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh--ccccccccce
Confidence 4578999999999888888876 67799999999999999998887775444455555665432111 0112478999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l 152 (312)
|-. +.......+|....+.++.||.+.+|.-|...+
T Consensus 187 IDL--------DPyGs~s~FLDsAvqav~~gGLL~vT~TD~aVL 222 (525)
T KOG1253|consen 187 IDL--------DPYGSPSPFLDSAVQAVRDGGLLCVTCTDMAVL 222 (525)
T ss_pred Eec--------CCCCCccHHHHHHHHHhhcCCEEEEEecchHhh
Confidence 953 333345678888999999999999996665433
No 274
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.49 E-value=0.058 Score=49.99 Aligned_cols=123 Identities=12% Similarity=0.157 Sum_probs=61.8
Q ss_pred CCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 32 YVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
..+|||+|.|.|.-+.....- ....++-++.|+..-+.... ...+-.......-..|++...+. ++ ....|++|
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~t-l~~nv~t~~td~r~s~vt~dRl~--lp-~ad~ytl~ 189 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDT-LAENVSTEKTDWRASDVTEDRLS--LP-AADLYTLA 189 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHH-HHhhcccccCCCCCCccchhccC--CC-ccceeehh
Confidence 457999999999544332211 22345555655543332222 22211100111222233222110 11 23445555
Q ss_pred Eeccc-hhhhcCCHHHHHHHHHHHHhccCCCcEEEEE---ecChhHHHHHHHHhH
Q 021467 110 CCFQH-LQMCFETEERARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV 160 (312)
Q Consensus 110 ~~~~~-lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~---~p~~~~l~~~~~~~~ 160 (312)
+...- +|. .++..+...++.+..++.|||.+++. +|-+-.++.+.++.+
T Consensus 190 i~~~eLl~d--~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~l 242 (484)
T COG5459 190 IVLDELLPD--GNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQIL 242 (484)
T ss_pred hhhhhhccc--cCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHH
Confidence 44332 222 34444556899999999999999999 555555555555543
No 275
>PRK10742 putative methyltransferase; Provisional
Probab=95.48 E-value=0.058 Score=47.95 Aligned_cols=80 Identities=10% Similarity=-0.005 Sum_probs=56.8
Q ss_pred CCCC--EEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc------CC--CceEEEEEcCCCCCchhhhh
Q 021467 30 HPYV--TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ------RK--NFIAEFFEADPCAENFETQM 99 (312)
Q Consensus 30 ~~~~--~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~------~~--~~~~~f~~~D~~~~~~~~~~ 99 (312)
+++. +|||+-+|.|.+...++..+. +|+++|-++......+...+.. +. ..+++.+++|.... +
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~-----L 158 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA-----L 158 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH-----H
Confidence 3555 899999999999998887766 5999999999887776655442 11 12477777776442 1
Q ss_pred hhcCCceeEEEeccch
Q 021467 100 QEKANQADLVCCFQHL 115 (312)
Q Consensus 100 ~~~~~~fD~V~~~~~l 115 (312)
.....+||+|.+--.+
T Consensus 159 ~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 159 TDITPRPQVVYLDPMF 174 (250)
T ss_pred hhCCCCCcEEEECCCC
Confidence 1123479999987643
No 276
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.47 E-value=0.12 Score=48.03 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=65.6
Q ss_pred HhcCCCCEEEEECCC-CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467 27 IYSHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (312)
Q Consensus 27 ~~~~~~~~VLDlGCG-~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~ 105 (312)
..+.|+.+|+=+|+| -|..+.+++++-..+|+++|.|++-++.|++--.. .++... +.+....+ .+.
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~--~~~~~~~~---~~~ 229 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSS--DSDALEAV---KEI 229 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcC--CchhhHHh---Hhh
Confidence 345689999999998 23456677776558999999999999888876533 233322 22221111 234
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
||+|+..-. .+ .+....+.||+||+++..
T Consensus 230 ~d~ii~tv~-~~----------~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 230 ADAIIDTVG-PA----------TLEPSLKALRRGGTLVLV 258 (339)
T ss_pred CcEEEECCC-hh----------hHHHHHHHHhcCCEEEEE
Confidence 999987664 33 466677899999999987
No 277
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.45 E-value=0.13 Score=48.79 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=34.0
Q ss_pred cCCceeEEEeccchhhhcCC----------------------------------HHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 102 KANQADLVCCFQHLQMCFET----------------------------------EERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 102 ~~~~fD~V~~~~~lh~~~~~----------------------------------~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
+.++.+++.+.+++|+.=.- ..+...+|+.=++-|+|||.+++++.
T Consensus 159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~ 238 (386)
T PLN02668 159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL 238 (386)
T ss_pred CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence 56899999999999984110 01345566666788999999999853
Q ss_pred C
Q 021467 148 D 148 (312)
Q Consensus 148 ~ 148 (312)
.
T Consensus 239 G 239 (386)
T PLN02668 239 G 239 (386)
T ss_pred c
Confidence 3
No 278
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.45 E-value=0.053 Score=50.56 Aligned_cols=123 Identities=12% Similarity=0.117 Sum_probs=80.9
Q ss_pred HhHHHHHHHHHHHHhcCC-CCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC
Q 021467 14 HRLYEFAKTALIKIYSHP-YVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC 91 (312)
Q Consensus 14 ~~~~n~vk~~li~~~~~~-~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~ 91 (312)
.++|.=+--.+++.+.+. ..+|||.=+|+|--...++.. +..+++.-|+|+++++..+++.+.+. ......+..|+.
T Consensus 34 m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~-~~~~~v~n~DAN 112 (380)
T COG1867 34 MEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNS-GEDAEVINKDAN 112 (380)
T ss_pred hhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcC-cccceeecchHH
Confidence 345444444455555533 579999999999655555544 44489999999999999999988762 122445555553
Q ss_pred CCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467 92 AENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (312)
Q Consensus 92 ~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~ 150 (312)
.. +......||+|=.-- -.....++....+.++.||++.+|.-|..
T Consensus 113 ~l-----m~~~~~~fd~IDiDP--------FGSPaPFlDaA~~s~~~~G~l~vTATD~a 158 (380)
T COG1867 113 AL-----LHELHRAFDVIDIDP--------FGSPAPFLDAALRSVRRGGLLCVTATDTA 158 (380)
T ss_pred HH-----HHhcCCCccEEecCC--------CCCCchHHHHHHHHhhcCCEEEEEecccc
Confidence 31 111237899985422 22245567777788888999999965553
No 279
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.38 E-value=0.1 Score=45.97 Aligned_cols=108 Identities=15% Similarity=0.073 Sum_probs=72.0
Q ss_pred HHhcCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467 26 KIYSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA 103 (312)
Q Consensus 26 ~~~~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~ 103 (312)
+.+++|+.+||-||.++|........- +-..|++++.|..+=.......+.. .++--+..|+....- +...-
T Consensus 151 nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~K---YRmlV 224 (317)
T KOG1596|consen 151 NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAK---YRMLV 224 (317)
T ss_pred ceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchh---eeeee
Confidence 345669999999999999777666543 4457999999986544433322221 125556777765321 00012
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
...|+|++-- ...++.+.+.-|..-.||+||.|+++
T Consensus 225 gmVDvIFaDv------aqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 225 GMVDVIFADV------AQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeEEEEeccC------CCchhhhhhhhhhhhhhccCCeEEEE
Confidence 4577776543 23567788888999999999999988
No 280
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.27 E-value=1.5 Score=38.79 Aligned_cols=118 Identities=14% Similarity=-0.046 Sum_probs=67.7
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
.+.+||=+|=+.-..+...+.....+++.+||++..++.-++..+..+. +++.+..|+... +... -.++||+++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl--~i~~~~~DlR~~-LP~~---~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL--PIEAVHYDLRDP-LPEE---LRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TT---TSS-BSEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC--ceEEEEeccccc-CCHH---HhcCCCEEE
Confidence 6789999984433222222223567999999999999998888877653 388889998773 2111 248999999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCc-EEEEEecCh---hHHHHHHHHh
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGG-YFLGITPDS---STIWAKYQKN 159 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG-~~i~~~p~~---~~l~~~~~~~ 159 (312)
+--. .+.+.+.-++......||.-| ..++..-.. ...|..+++.
T Consensus 118 TDPP-----yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~ 165 (243)
T PF01861_consen 118 TDPP-----YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRF 165 (243)
T ss_dssp E--------SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHH
T ss_pred eCCC-----CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHH
Confidence 8763 567889999999999998766 444443333 2344455544
No 281
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.18 E-value=0.063 Score=46.96 Aligned_cols=93 Identities=11% Similarity=0.111 Sum_probs=57.4
Q ss_pred CCCEEEEECCCCCccHHHHHH--cCCCeEEEEeCChHHHHHHHHHHHhc-CCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 31 PYVTVCDLYCGAGVDVDKWET--ALIANYIGIDVATSGIGEARDTWENQ-RKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~--~~~~~v~giDis~~~i~~a~~r~~~~-~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
++.++||||.|.- =+..+.- .-..+.+|.||++.+++.|+.....+ +....++.....-.. .+...+...++.||
T Consensus 78 ~~i~~LDIGvGAn-CIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~-~if~giig~nE~yd 155 (292)
T COG3129 78 KNIRILDIGVGAN-CIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD-AIFNGIIGKNERYD 155 (292)
T ss_pred CceEEEeeccCcc-cccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc-ccccccccccceee
Confidence 5678999998864 2222221 13458999999999999999988776 222223333221111 11111222468999
Q ss_pred EEEeccchhhhcCCHHHHHHH
Q 021467 108 LVCCFQHLQMCFETEERARRL 128 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~ 128 (312)
++.|+-.+|. +.+++.+.
T Consensus 156 ~tlCNPPFh~---s~~da~~g 173 (292)
T COG3129 156 ATLCNPPFHD---SAADARAG 173 (292)
T ss_pred eEecCCCcch---hHHHHHhc
Confidence 9999999886 45555444
No 282
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.16 E-value=0.024 Score=43.55 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCC
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVA 63 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis 63 (312)
+.....|||||+| .+..++...+..=.|+|.-
T Consensus 58 ~~~~FVDlGCGNG-LLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNG-LLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCch-HHHHHHHhCCCCccccccc
Confidence 3457999999999 5665555544367799874
No 283
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.09 E-value=0.18 Score=45.69 Aligned_cols=123 Identities=13% Similarity=0.034 Sum_probs=80.4
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCC---CceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRK---NFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~---~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
...+||=+|-|.|+.++.-.++ ...++.-+|+....++..++-.+.... ..++....+|-.. +...+ +.++|
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~--fl~~~--~~~~~ 196 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL--FLEDL--KENPF 196 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH--HHHHh--ccCCc
Confidence 4578999999999988766655 567899999999988888776655321 2347777776533 22222 35899
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHH
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~ 158 (312)
|+|+.-..=--.---.--.+..++-+.+.||+||+++... +.-.+..++-+
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~-ec~wl~~~~i~ 247 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG-ECMWLHLDYIK 247 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec-ceehHHHHHHH
Confidence 9998633200000001124677889999999999998775 44444444433
No 284
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=95.03 E-value=0.083 Score=48.35 Aligned_cols=117 Identities=18% Similarity=0.247 Sum_probs=78.7
Q ss_pred CEEEEECCCCCccHHHHHHc------------CC---------CeEEEEeCChHH--HHHHHHHHHhc------------
Q 021467 33 VTVCDLYCGAGVDVDKWETA------------LI---------ANYIGIDVATSG--IGEARDTWENQ------------ 77 (312)
Q Consensus 33 ~~VLDlGCG~G~~l~~~~~~------------~~---------~~v~giDis~~~--i~~a~~r~~~~------------ 77 (312)
.+||-||.|.|+.+..++.. .. ..++.|||++-+ ++.........
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 69999999998766544321 01 389999998643 22222222211
Q ss_pred ----CCCceEEEEEcCCCCCchhhhhhh-cCCceeEEEeccchhhhc-CCHHHHHHHHHHHHhccCCCcEEEEE-ecCh
Q 021467 78 ----RKNFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCF-ETEERARRLLQNVSSLLKPGGYFLGI-TPDS 149 (312)
Q Consensus 78 ----~~~~~~~f~~~D~~~~~~~~~~~~-~~~~fD~V~~~~~lh~~~-~~~~~~~~~l~~i~~~LkpGG~~i~~-~p~~ 149 (312)
...+.+.|.+.|+......+.... .....|+|+..|.++-.| .+..+...+|.++...++||-.+++. .|.+
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 235678999999987654221100 123689999999987665 55778899999999999999999887 3433
No 285
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.91 E-value=0.93 Score=40.80 Aligned_cols=113 Identities=13% Similarity=0.042 Sum_probs=72.8
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHH-HHHHHHHHHhcC--CCceEEEEEcCCCCCchhhhhhhc---CCc
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSG-IGEARDTWENQR--KNFIAEFFEADPCAENFETQMQEK---ANQ 105 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~-i~~a~~r~~~~~--~~~~~~f~~~D~~~~~~~~~~~~~---~~~ 105 (312)
...|+.||||- |...+.......+..+|++... ++.-++.++..+ ...+..++.+|+. ......+... ...
T Consensus 82 ~~qvV~LGaGl--DTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGL--DTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCcc--ccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCC
Confidence 35799999987 5555543322234555555444 444444454322 1234788899987 4443333221 123
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
--++++-.++.| .+.+....+++.+.+...||+.+++...+.
T Consensus 159 ptl~i~EGvl~Y--L~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 159 PTAWLWEGLLMY--LTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred Ceeeeecchhhc--CCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 447777888888 789999999999999999999999986543
No 286
>PHA01634 hypothetical protein
Probab=94.86 E-value=0.19 Score=39.98 Aligned_cols=47 Identities=4% Similarity=-0.193 Sum_probs=41.3
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ 77 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~ 77 (312)
.+.+|+|+|.+-|..+..++..+...|+++++++...+..++..+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 67899999999997777777889999999999999999888877654
No 287
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.83 E-value=0.45 Score=42.20 Aligned_cols=110 Identities=18% Similarity=0.180 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCCccHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-----~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~ 105 (312)
.....+|+|+|+..-...++.+ ...+|+.+|+|...++...+.+...-....+.-+++|... .+.. ++ ..+.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~-~La~-~~-~~~~ 154 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYEL-ALAE-LP-RGGR 154 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHH-HHhc-cc-CCCe
Confidence 3679999999998655544443 2368999999999988765554433233445556666432 1110 11 1122
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
==.+....++.+ .+.+....+|..+...|+||-+|++-
T Consensus 155 Rl~~flGStlGN--~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 155 RLFVFLGSTLGN--LTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEEEEecccccC--CChHHHHHHHHHHHhcCCCcceEEEe
Confidence 223344455666 67888999999999999999999865
No 288
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.59 E-value=0.098 Score=48.36 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=77.0
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHH-------HHHHHhcCC-CceEEEEEcCCCCCchhhhhh
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEA-------RDTWENQRK-NFIAEFFEADPCAENFETQMQ 100 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a-------~~r~~~~~~-~~~~~f~~~D~~~~~~~~~~~ 100 (312)
+++|.-|+|-=-|||+.+...+.-+. .|+|.||+-.++... +.++++.+. ..-+....+|....++.
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r---- 280 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR---- 280 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh----
Confidence 45899999999999988877655554 899999998888732 233343332 22356778888877664
Q ss_pred hcCCceeEEEeccch-------------------------hhhcCC----HHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 101 EKANQADLVCCFQHL-------------------------QMCFET----EERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 101 ~~~~~fD~V~~~~~l-------------------------h~~~~~----~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
....||.|+|--.. |+--.. ..-....|.-.++.|..||++++..|..
T Consensus 281 -sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 281 -SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred -hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 35689999994321 110000 1222455667788999999999887754
No 289
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=94.57 E-value=0.9 Score=43.15 Aligned_cols=128 Identities=16% Similarity=0.182 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCCccHHHHHH----c----CCCeEEEEeC----ChHHHHHHHHHHHhcC--CCceEEEEEc--C-CCCC
Q 021467 31 PYVTVCDLYCGAGVDVDKWET----A----LIANYIGIDV----ATSGIGEARDTWENQR--KNFIAEFFEA--D-PCAE 93 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~----~----~~~~v~giDi----s~~~i~~a~~r~~~~~--~~~~~~f~~~--D-~~~~ 93 (312)
+..+|+|+|.|.|.--..+.+ . +.-+++||+. +...++.+.+++.... .+.+.+|... + ....
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 557899999999953322222 2 2348999999 8889999888875421 1223444332 2 2221
Q ss_pred chhhhhhhcCCceeEEEeccchhhhcCCH---H-HHHHHHHHHHhccCCCcEEEEE---ecChhHHHHHHHHhH
Q 021467 94 NFETQMQEKANQADLVCCFQHLQMCFETE---E-RARRLLQNVSSLLKPGGYFLGI---TPDSSTIWAKYQKNV 160 (312)
Q Consensus 94 ~~~~~~~~~~~~fD~V~~~~~lh~~~~~~---~-~~~~~l~~i~~~LkpGG~~i~~---~p~~~~l~~~~~~~~ 160 (312)
.. ..+...++..=+|.|.+.+|++.... + ....+|+ ..+.|+|.-..++- -.|+..+..|+.+.+
T Consensus 190 ~~-~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~-~ir~L~P~vvv~~E~ea~~n~~~F~~RF~eal 261 (374)
T PF03514_consen 190 DP-SMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLR-VIRSLNPKVVVLVEQEADHNSPSFLERFREAL 261 (374)
T ss_pred CH-HHhCccCCcEEEEEeehhhhhhccccccccchHHHHHH-HHHhcCCCEEEEEeecCCCCCCchHHHHHHHH
Confidence 11 11222335565777888899865322 1 2344555 55588998554443 223345666665543
No 290
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=94.39 E-value=0.2 Score=42.75 Aligned_cols=110 Identities=22% Similarity=0.099 Sum_probs=60.4
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHH----HHHH-HHhcCCCceEEEEEcCCCCCchhhhhhh
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGE----ARDT-WENQRKNFIAEFFEADPCAENFETQMQE 101 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~----a~~r-~~~~~~~~~~~f~~~D~~~~~~~~~~~~ 101 (312)
++++.+|+|+=.|.|....-+... ....|+++-..+...-. .+.+ .......-+.+.+-.+.....
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~------- 118 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG------- 118 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-------
Confidence 348899999999999766655443 22367766554431111 1100 000000000122222222211
Q ss_pred cCCceeEEEecc---chhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 102 KANQADLVCCFQ---HLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 102 ~~~~fD~V~~~~---~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
.....|++.... .+|.-+.+...+..+...+.+.|||||.+.+.
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~ 165 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVE 165 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEE
Confidence 234566655422 24544555677889999999999999999986
No 291
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.23 E-value=0.068 Score=44.19 Aligned_cols=104 Identities=16% Similarity=0.117 Sum_probs=59.2
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHH-HHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGE-ARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~-a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
+.+++=+|...-..=...++.+..++.-++.++--+++ .+.|.. .+...++...+....++||.++
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s-------------si~p~df~~~~~~y~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS-------------SILPVDFAKNWQKYAGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc-------------cccHHHHHHHHHHhhccchhhh
Confidence 45677777664422222234467778888876522211 111110 1111123223333468899999
Q ss_pred eccchhhh--------cCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 111 CFQHLQMC--------FETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 111 ~~~~lh~~--------~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
|..++.+. .. ...-...+.++.++|||||.+++.+|-.
T Consensus 69 s~~siEh~GLGRYGDPid-p~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPID-PIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred eechhccccccccCCCCC-ccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 98877443 11 1223566788999999999999997765
No 292
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.16 E-value=0.05 Score=52.71 Aligned_cols=110 Identities=17% Similarity=0.240 Sum_probs=66.3
Q ss_pred CEEEEECCCCCccHHHHHHcCCC--eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 33 VTVCDLYCGAGVDVDKWETALIA--NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 33 ~~VLDlGCG~G~~l~~~~~~~~~--~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
..|+|+..|.||++..+...+.. +|+-+ ..+..+..--+| +. +-. -.|-++ .+. .-+.+||+|.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----GL---IG~-yhDWCE-~fs----TYPRTYDLlH 432 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----GL---IGV-YHDWCE-AFS----TYPRTYDLLH 432 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----cc---chh-ccchhh-ccC----CCCcchhhee
Confidence 47999999999999988765532 22222 222222222222 11 111 123222 121 1468999999
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHHh
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQKN 159 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~~ 159 (312)
+...+-. ..+.-.+...|-++-|.|||||.+|+- |.-.++.++++.
T Consensus 433 A~~lfs~-~~~rC~~~~illEmDRILRP~G~~iiR--D~~~vl~~v~~i 478 (506)
T PF03141_consen 433 ADGLFSL-YKDRCEMEDILLEMDRILRPGGWVIIR--DTVDVLEKVKKI 478 (506)
T ss_pred hhhhhhh-hcccccHHHHHHHhHhhcCCCceEEEe--ccHHHHHHHHHH
Confidence 8875433 244566788999999999999998864 555555665543
No 293
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.14 E-value=0.29 Score=43.58 Aligned_cols=112 Identities=17% Similarity=0.002 Sum_probs=63.4
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHh----cCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN----QRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~----~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
..+||++|.|+|-....++.....+|+..|+..........+-.. +..+..+.....+=....-.+.. .+..||
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~--~~~~~D 164 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR--LPNPFD 164 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc--cCCccc
Confidence 457999999999555555555667999999877655433332111 11111222222211111111111 112299
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
+|++..++ -+++..+.++..++..|-.+|++++.++=.
T Consensus 165 lilasDvv----y~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 165 LILASDVV----YEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEEeeee----ecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 99998853 335556777888888898888666665443
No 294
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.13 E-value=0.066 Score=48.54 Aligned_cols=96 Identities=20% Similarity=0.048 Sum_probs=69.2
Q ss_pred CCCEEEEECCCCCccHH-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~-~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.+..|.|+-.|-|.+.. .+..++...|+++|.++.+++..++..+.++...+...+.+|..... +....|-|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~-------~~~~AdrV 266 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK-------PRLRADRV 266 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC-------ccccchhe
Confidence 56789999999999888 66777889999999999999999999888765455566667765544 35677777
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcE
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGY 141 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~ 141 (312)
.... .-.+++.... +.++|||.|-
T Consensus 267 nLGL----lPSse~~W~~----A~k~Lk~egg 290 (351)
T KOG1227|consen 267 NLGL----LPSSEQGWPT----AIKALKPEGG 290 (351)
T ss_pred eecc----ccccccchHH----HHHHhhhcCC
Confidence 6544 2233443433 4457887443
No 295
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.10 E-value=0.16 Score=44.48 Aligned_cols=116 Identities=18% Similarity=0.226 Sum_probs=72.3
Q ss_pred CCEEEEECCCCCccHHHHHHc-------C---CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh-hh
Q 021467 32 YVTVCDLYCGAGVDVDKWETA-------L---IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-MQ 100 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~-------~---~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~-~~ 100 (312)
-.+|.|||...|.-..-+.+. . ...+++||+-+- ..-.+ +.-+++|++.....+. +.
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M--------aPI~G----V~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM--------APIEG----VIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC--------CccCc----eEEeecccCCHhHHHHHHH
Confidence 358999999999544333322 1 113999999642 12222 6678999988654332 22
Q ss_pred h-cCCceeEEEeccc-----hhhhcCC---HHHHHHHHHHHHhccCCCcEEEEEecC---hhHHHHHHHHhH
Q 021467 101 E-KANQADLVCCFQH-----LQMCFET---EERARRLLQNVSSLLKPGGYFLGITPD---SSTIWAKYQKNV 160 (312)
Q Consensus 101 ~-~~~~fD~V~~~~~-----lh~~~~~---~~~~~~~l~~i~~~LkpGG~~i~~~p~---~~~l~~~~~~~~ 160 (312)
. ...+.|+|+|-.+ +|.+ .. .+-+..+|.-...+|||||.|+.-+-- ...|+..+++..
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~-DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ff 180 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDL-DEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRKFF 180 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccH-HHHHHHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHHHh
Confidence 1 2458999999765 6652 11 123355566677899999999977443 355666666543
No 296
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=94.04 E-value=0.2 Score=48.83 Aligned_cols=119 Identities=18% Similarity=0.136 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCC----CCEEEEECCCCCccHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEc
Q 021467 18 EFAKTALIKIYSHP----YVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEA 88 (312)
Q Consensus 18 n~vk~~li~~~~~~----~~~VLDlGCG~G~~l~~~~~~-----~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~ 88 (312)
.-|...|+++-... ...|+=+|.|.|-...+.+++ +..++++++-++.++.....+-- .....+++.+..
T Consensus 350 ~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~-~~W~~~Vtii~~ 428 (649)
T KOG0822|consen 350 QAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF-ECWDNRVTIISS 428 (649)
T ss_pred HHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch-hhhcCeeEEEec
Confidence 44555565553321 346888999999766555443 34489999999999887766322 122345999999
Q ss_pred CCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 89 DPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 89 D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|+..... +..+.|++++-. +. +|.+-+--.+.|.-+.+.|||+|+.|=.
T Consensus 429 DMR~w~a------p~eq~DI~VSEL-LG-SFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 429 DMRKWNA------PREQADIIVSEL-LG-SFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred cccccCC------chhhccchHHHh-hc-cccCccCCHHHHHHHHhhcCCCceEccc
Confidence 9988663 347899887532 11 4555666678999999999999987633
No 297
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.43 E-value=0.088 Score=52.09 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=62.0
Q ss_pred hcCCCCEEEEECCCCCccHHHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cC
Q 021467 28 YSHPYVTVCDLYCGAGVDVDKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KA 103 (312)
Q Consensus 28 ~~~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~ 103 (312)
++.+...||||||..|+-+.-..+. ...-|+|+|+-+.- .. ..+.-++.|++.......+.. ..
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik---------p~---~~c~t~v~dIttd~cr~~l~k~l~t 108 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK---------PI---PNCDTLVEDITTDECRSKLRKILKT 108 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc---------cC---CccchhhhhhhHHHHHHHHHHHHHh
Confidence 4568889999999999766554443 34579999997631 11 114444555554332221110 23
Q ss_pred CceeEEEeccc-------hhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 104 NQADLVCCFQH-------LQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 104 ~~fD~V~~~~~-------lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
-+.|+|+.-.+ .|.+|....-.-..|+-....|+.||.|+--
T Consensus 109 ~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 109 WKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTK 157 (780)
T ss_pred CCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence 45588776433 2333333333455677778899999996643
No 298
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=92.96 E-value=1.1 Score=38.40 Aligned_cols=105 Identities=13% Similarity=0.132 Sum_probs=72.7
Q ss_pred CCCEEEEECCCCCccHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc-CC
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-AN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-----~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~-~~ 104 (312)
....|++.|.-.||.+...+.. ...+|+|+||+-..++-+..+. . .+.|++++..+.....+.+.. .+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~--p----~i~f~egss~dpai~eqi~~~~~~ 142 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV--P----DILFIEGSSTDPAIAEQIRRLKNE 142 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC--C----CeEEEeCCCCCHHHHHHHHHHhcC
Confidence 4478999999999877765542 2358999999977665544432 2 289999998887655443322 23
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
.--+.+|..+-|. .+...+-|+-...+|..|-++++-
T Consensus 143 y~kIfvilDsdHs----~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 143 YPKIFVILDSDHS----MEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred CCcEEEEecCCch----HHHHHHHHHHhhhHhhcCceEEEe
Confidence 3345666666666 455666778888899999998876
No 299
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=92.82 E-value=0.21 Score=47.72 Aligned_cols=57 Identities=16% Similarity=0.029 Sum_probs=44.5
Q ss_pred CEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcC
Q 021467 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEAD 89 (312)
Q Consensus 33 ~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D 89 (312)
..|||+|.|+|-.......++...+++++.=..|.+.|++....++...++..+..-
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr 124 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKR 124 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccc
Confidence 469999999994333444557789999999999999999998888766666665543
No 300
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=92.82 E-value=0.24 Score=47.65 Aligned_cols=109 Identities=13% Similarity=0.070 Sum_probs=64.8
Q ss_pred CCEEEEECCCCCccHHHHH---HcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh-hcCCcee
Q 021467 32 YVTVCDLYCGAGVDVDKWE---TALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQAD 107 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~---~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~-~~~~~fD 107 (312)
...++|+|.|.|....... ......|+.||.|..|+.......++.. ...-.++...+..... ++ +....||
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~-~~g~~~v~~~~~~r~~---~pi~~~~~yD 276 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS-HIGEPIVRKLVFHRQR---LPIDIKNGYD 276 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh-hcCchhccccchhccc---CCCCccccee
Confidence 3578889988774433222 1234579999999999999887765511 0001111110111111 11 0246699
Q ss_pred EEEeccchhhhcCCHHHHHHHHHH-HHhccCCCcEEEEE
Q 021467 108 LVCCFQHLQMCFETEERARRLLQN-VSSLLKPGGYFLGI 145 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~-i~~~LkpGG~~i~~ 145 (312)
+|+|.+.+|.. .+........++ ..+..++||.++++
T Consensus 277 lvi~ah~l~~~-~s~~~R~~v~~s~~r~~~r~g~~lViI 314 (491)
T KOG2539|consen 277 LVICAHKLHEL-GSKFSRLDVPESLWRKTDRSGYFLVII 314 (491)
T ss_pred eEEeeeeeecc-CCchhhhhhhHHHHHhccCCCceEEEE
Confidence 99999999874 444444444444 45677889998887
No 301
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.75 E-value=0.2 Score=45.97 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=63.6
Q ss_pred EEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEecc
Q 021467 34 TVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 34 ~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
+++||-||.|+...-+..++...+.++|+++.+.+.-+.++. ....+|+.+.... .+ +. .+|+++..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~-~l--~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPS-DL--PK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHH-HH--HH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccc-cc--cc-cceEEEecc
Confidence 799999999999998888888889999999998777666664 4678888876543 22 22 599998866
Q ss_pred chhh--------hcCCHHH-HHHHHHHHHhccCCCcEEEEEecC
Q 021467 114 HLQM--------CFETEER-ARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 114 ~lh~--------~~~~~~~-~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
..+- .+.+... +-.-+-.+.+.++|.-.++=-+++
T Consensus 70 PCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~ 113 (335)
T PF00145_consen 70 PCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPG 113 (335)
T ss_dssp --TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGG
T ss_pred CCceEeccccccccccccchhhHHHHHHHhhccceEEEecccce
Confidence 5332 1222211 222233345567896544433444
No 302
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=92.62 E-value=0.55 Score=44.51 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=65.1
Q ss_pred CCCCEEEEECCCC-CccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhhh--cCC
Q 021467 30 HPYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQE--KAN 104 (312)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~-~~~~~~~~--~~~ 104 (312)
.++.+||.+|||. |..+..+++... .+++++|.+++.++.+++... +..+. .... .+...+.. ...
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~-------~~vi~--~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG-------AETIN--FEEVDDVVEALRELTGGR 253 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC-------cEEEc--CCcchHHHHHHHHHcCCC
Confidence 4678999999987 666666666644 469999999999888877531 22221 1111 12221111 224
Q ss_pred ceeEEEeccchh-------h----hcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 105 QADLVCCFQHLQ-------M----CFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 105 ~fD~V~~~~~lh-------~----~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
.+|+|+..-.-+ . .+....+....+..+.++|+++|.++...
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 689887643211 1 01111223456788889999999998763
No 303
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=92.29 E-value=0.55 Score=41.49 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=45.2
Q ss_pred CEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHH---HHHHhcCCC-----ceEEEEEcCCCCCchhhhhhhcCC
Q 021467 33 VTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEAR---DTWENQRKN-----FIAEFFEADPCAENFETQMQEKAN 104 (312)
Q Consensus 33 ~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~---~r~~~~~~~-----~~~~f~~~D~~~~~~~~~~~~~~~ 104 (312)
.+|||.-+|-|.|+.-++..+. +|++++-|+.+-...+ +++...... .+++++++|..+.- ..++.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L-----~~~~~ 150 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYL-----RQPDN 150 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHC-----CCHSS
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHH-----hhcCC
Confidence 4899999999999998876654 8999999987655433 444433222 35899999986621 11468
Q ss_pred ceeEEEecc
Q 021467 105 QADLVCCFQ 113 (312)
Q Consensus 105 ~fD~V~~~~ 113 (312)
+||+|..--
T Consensus 151 s~DVVY~DP 159 (234)
T PF04445_consen 151 SFDVVYFDP 159 (234)
T ss_dssp --SEEEE--
T ss_pred CCCEEEECC
Confidence 999999876
No 304
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.00 E-value=1.3 Score=40.48 Aligned_cols=99 Identities=17% Similarity=0.224 Sum_probs=60.7
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh-hhcCCce
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQA 106 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~-~~~~~~f 106 (312)
..++.+||..|||. |..+..+++....++++++.+++..+.+++. + +..+..+ ........+ ......+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~----g----~~~~~~~-~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL----G----ADEVLNS-LDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----C----CCEEEcC-CCcCHHHHHHHhcCCCc
Confidence 34678999988763 5566666666556899999999888777542 1 1111111 111111111 1134679
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
|+|+..... ...++.+.+.|+++|.++...
T Consensus 234 D~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 234 DVIFDFVGT----------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred eEEEECCCC----------HHHHHHHHHHhhcCCEEEEEC
Confidence 988754311 235777889999999998763
No 305
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=91.63 E-value=0.91 Score=44.85 Aligned_cols=105 Identities=18% Similarity=0.189 Sum_probs=63.3
Q ss_pred CCCEEEEECCCCCcc-HHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-------------chh
Q 021467 31 PYVTVCDLYCGAGVD-VDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-------------NFE 96 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~-l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~-------------~~~ 96 (312)
++.+|+=+|||.=|. +...++.....|+++|.+++-++++++- + +++...|..+. ++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchhHH
Confidence 688999999997543 3444555445899999999998888763 2 33333322111 100
Q ss_pred h----hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 97 T----QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 97 ~----~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
. .+...-..+|+|+....... ......+.+...+.+||||.++....
T Consensus 236 ~~~~~~~~~~~~gaDVVIetag~pg----~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 236 KAEMALFAEQAKEVDIIITTALIPG----KPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHhccCCCCEEEECCCCCc----ccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 00111146999987663211 11122335888899999999886643
No 306
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.25 E-value=1.7 Score=33.41 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=53.9
Q ss_pred CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHH
Q 021467 53 LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNV 132 (312)
Q Consensus 53 ~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i 132 (312)
....|+.+|.+++.++.+++.. ..++.+|..+........ -...|.|++.. .+. .....+...
T Consensus 20 ~~~~vvvid~d~~~~~~~~~~~--------~~~i~gd~~~~~~l~~a~--i~~a~~vv~~~------~~d-~~n~~~~~~ 82 (116)
T PF02254_consen 20 GGIDVVVIDRDPERVEELREEG--------VEVIYGDATDPEVLERAG--IEKADAVVILT------DDD-EENLLIALL 82 (116)
T ss_dssp TTSEEEEEESSHHHHHHHHHTT--------SEEEES-TTSHHHHHHTT--GGCESEEEEES------SSH-HHHHHHHHH
T ss_pred CCCEEEEEECCcHHHHHHHhcc--------cccccccchhhhHHhhcC--ccccCEEEEcc------CCH-HHHHHHHHH
Confidence 4458999999999988777654 568899998866543332 25688777544 122 233344455
Q ss_pred HhccCCCcEEEEEecChhH
Q 021467 133 SSLLKPGGYFLGITPDSST 151 (312)
Q Consensus 133 ~~~LkpGG~~i~~~p~~~~ 151 (312)
.+.+-|...++....+.+.
T Consensus 83 ~r~~~~~~~ii~~~~~~~~ 101 (116)
T PF02254_consen 83 ARELNPDIRIIARVNDPEN 101 (116)
T ss_dssp HHHHTTTSEEEEEESSHHH
T ss_pred HHHHCCCCeEEEEECCHHH
Confidence 5777788888888777644
No 307
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=91.00 E-value=1.4 Score=37.20 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=56.2
Q ss_pred CCC-EEEEECCCCCccHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCC--ceEEEEEcCCCCCchhhhhhhc--
Q 021467 31 PYV-TVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKN--FIAEFFEADPCAENFETQMQEK-- 102 (312)
Q Consensus 31 ~~~-~VLDlGCG~G~~l~~~~~~---~~~~v~giDis~~~i~~a~~r~~~~~~~--~~~~f~~~D~~~~~~~~~~~~~-- 102 (312)
++. .|+.||||- |...|... +...++-+|... +++.-++.++..... ...+++.+|+.+..+...+...
T Consensus 77 ~~~~qvV~LGaGl--DTr~~Rl~~~~~~~~~~evD~p~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~ 153 (183)
T PF04072_consen 77 PGARQVVNLGAGL--DTRAYRLDNPAGGVRWFEVDLPE-VIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGF 153 (183)
T ss_dssp TTESEEEEET-TT----HHHHHHHTTTTEEEEEEE-HH-HHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT
T ss_pred CCCcEEEEcCCCC--CchHHHhhccccceEEEEeCCHH-HHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCC
Confidence 555 899999997 45544332 234555666543 344444444433111 1245799999986665555422
Q ss_pred -CCceeEEEeccchhhhcCCHHHHHHHHHHHH
Q 021467 103 -ANQADLVCCFQHLQMCFETEERARRLLQNVS 133 (312)
Q Consensus 103 -~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~ 133 (312)
...--++++-.++.| .+.++...+++.++
T Consensus 154 ~~~~ptl~i~Egvl~Y--l~~~~~~~ll~~ia 183 (183)
T PF04072_consen 154 DPDRPTLFIAEGVLMY--LSPEQVDALLRAIA 183 (183)
T ss_dssp -TTSEEEEEEESSGGG--S-HHHHHHHHHHH-
T ss_pred CCCCCeEEEEcchhhc--CCHHHHHHHHHHhC
Confidence 345668888888999 77888888888763
No 308
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=90.96 E-value=0.37 Score=43.52 Aligned_cols=54 Identities=17% Similarity=0.004 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHH
Q 021467 15 RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIG 68 (312)
Q Consensus 15 ~~~n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~ 68 (312)
.+.+.++..+-.+..-.+.+|||+|||.|-.-......+...+...|.+.+.++
T Consensus 100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 344444433333444578999999999995555554556578899999988773
No 309
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.93 E-value=2.2 Score=42.16 Aligned_cols=115 Identities=12% Similarity=0.099 Sum_probs=67.5
Q ss_pred CCCEEEEECCCCCccHHHHHHc-----CCCeEEEEeCChHHHHHHHHHHHhcCCC-ceEEEEEcCCCCCchhhhhhhcCC
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-----LIANYIGIDVATSGIGEARDTWENQRKN-FIAEFFEADPCAENFETQMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-----~~~~v~giDis~~~i~~a~~r~~~~~~~-~~~~f~~~D~~~~~~~~~~~~~~~ 104 (312)
+...|.|..||+|+.+...... ....++|.+....+...|+....-++.. .......+|-...+- .. ...
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d--~~--~~~ 292 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKE--WE--NEN 292 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCcc--cc--ccc
Confidence 5578999999999988754331 2246999999999999888765332211 111222333322110 00 124
Q ss_pred ceeEEEeccchhh--------------------hcC-CHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 105 QADLVCCFQHLQM--------------------CFE-TEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 105 ~fD~V~~~~~lh~--------------------~~~-~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
+||+|+++..... ++. ....-..++..+..+|++||...++.|+.
T Consensus 293 ~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g 358 (501)
T TIGR00497 293 GFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 358 (501)
T ss_pred cCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence 5777665432110 000 01233567888999999999877775544
No 310
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=90.63 E-value=0.53 Score=38.40 Aligned_cols=107 Identities=15% Similarity=0.043 Sum_probs=48.3
Q ss_pred cCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
..-..-|||+|=|+|+.-..+... +..+++.+|-.-.+--.+. . ..-.++.+|+.+. +.. +.....+.-
T Consensus 26 ~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~---P-----~~~~~ilGdi~~t-l~~-~~~~g~~a~ 95 (160)
T PF12692_consen 26 AGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST---P-----PEEDLILGDIRET-LPA-LARFGAGAA 95 (160)
T ss_dssp TT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG-----------GGGEEES-HHHH-HHH-HHHH-S-EE
T ss_pred cCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC---C-----chHheeeccHHHH-hHH-HHhcCCceE
Confidence 334567999999999877666554 6678999997532110000 0 0124666766442 111 111234555
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
++.+-...|+--.+...+..+-.-+..+|.|||+++-.
T Consensus 96 laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 96 LAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp EEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred EEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 66655555551111112233344567899999998854
No 311
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.62 E-value=6.6 Score=32.76 Aligned_cols=61 Identities=20% Similarity=0.112 Sum_probs=39.4
Q ss_pred EEcCCCCCchhhhhhhcCCceeEEEeccchhh---------hcCCHHHHHHHHHHHHhccCCCcEEEEEecC
Q 021467 86 FEADPCAENFETQMQEKANQADLVCCFQHLQM---------CFETEERARRLLQNVSSLLKPGGYFLGITPD 148 (312)
Q Consensus 86 ~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~---------~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~ 148 (312)
...|++...- ........||.|+-+|..-- .-.+..-+..+++++..+|+++|.+.+|..+
T Consensus 58 ~~VDat~l~~--~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 58 HGVDATKLHK--HFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred cCCCCCcccc--cccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 3456655332 11113578999998885211 0012345688999999999999999998444
No 312
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.41 E-value=0.43 Score=42.61 Aligned_cols=60 Identities=5% Similarity=0.022 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCC-CCEEEEECCCCCccHHHHHHc---------CCCeEEEEeCChHHHHHHHHHHHh
Q 021467 17 YEFAKTALIKIYSHP-YVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWEN 76 (312)
Q Consensus 17 ~n~vk~~li~~~~~~-~~~VLDlGCG~G~~l~~~~~~---------~~~~v~giDis~~~i~~a~~r~~~ 76 (312)
.+|+.........+. ..+|+|+|.|+|..+..++.. ...+|+-||+|+.+.+..++++..
T Consensus 3 a~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 3 ARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 355555554443332 379999999999877666543 235899999999999888888765
No 313
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.06 E-value=1.5 Score=40.48 Aligned_cols=99 Identities=10% Similarity=0.059 Sum_probs=61.7
Q ss_pred CCCCEEEEECCCCCc-cHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC---chhhhhhh--c
Q 021467 30 HPYVTVCDLYCGAGV-DVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE---NFETQMQE--K 102 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~-~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~---~~~~~~~~--~ 102 (312)
+++.+||=+|+|.=+ .+..++++ +..+|+.+|+++.-|+.|++ +.. +.+.-+.... .+.+.... .
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga-------~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA-------TVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC-------eEEeeccccccHHHHHHHHHhhcc
Confidence 478999999999744 34455554 78899999999999999998 321 1111111111 11111111 1
Q ss_pred CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
...+|+.+-...++ ..++.....+|+||.+++..
T Consensus 240 ~~~~d~~~dCsG~~----------~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 240 KKQPDVTFDCSGAE----------VTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred ccCCCeEEEccCch----------HHHHHHHHHhccCCEEEEec
Confidence 24588876555433 34555677999999977663
No 314
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=89.78 E-value=8.2 Score=35.44 Aligned_cols=116 Identities=15% Similarity=0.137 Sum_probs=76.5
Q ss_pred CCEEEEECCCCCccHHHHHHcCC--CeEEEEeCChHHHHHHHHHHHhcCC--CceEEEEEcCCCCCchhhhhhh---cCC
Q 021467 32 YVTVCDLYCGAGVDVDKWETALI--ANYIGIDVATSGIGEARDTWENQRK--NFIAEFFEADPCAENFETQMQE---KAN 104 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~--~~v~giDis~~~i~~a~~r~~~~~~--~~~~~f~~~D~~~~~~~~~~~~---~~~ 104 (312)
...|+-||||- |+..+.-... ..|+-+|.= +.++.=++.+++.+- ....+++..|+...+....+.. ...
T Consensus 93 ~~qvViLgaGL--DTRayRl~~~~~~~vfEvD~P-evi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGL--DTRAYRLDWPKGTRVFEVDLP-EVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEecccc--ccceeecCCCCCCeEEECCCc-HHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 36899999986 5555533322 345555553 334433344444331 1247899999997666555542 123
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (312)
Q Consensus 105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l 152 (312)
.--++++-..+.| .+++...+++..|...+.||-.++...+.....
T Consensus 170 ~pt~~iaEGLl~Y--L~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~ 215 (297)
T COG3315 170 RPTLWIAEGLLMY--LPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSL 215 (297)
T ss_pred CCeEEEecccccc--CCHHHHHHHHHHHHHhCCCCceEEEeccccHHH
Confidence 3447788888888 789999999999999999999999887633333
No 315
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.56 E-value=0.57 Score=43.36 Aligned_cols=69 Identities=13% Similarity=0.014 Sum_probs=49.4
Q ss_pred EEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccc
Q 021467 35 VCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQH 114 (312)
Q Consensus 35 VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~ 114 (312)
|+||-||.|+...-+..++..-+.++|+++.+++.-+.++.. ..+.+|+.+....+ -..+|+++..+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~-----~~~~dvl~gg~P 68 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSD-----IPDFDILLGGFP 68 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhh-----CCCcCEEEecCC
Confidence 689999999988888778876677899999888776666532 24567776644311 135899987654
Q ss_pred h
Q 021467 115 L 115 (312)
Q Consensus 115 l 115 (312)
.
T Consensus 69 C 69 (315)
T TIGR00675 69 C 69 (315)
T ss_pred C
Confidence 3
No 316
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=88.70 E-value=1.1 Score=41.72 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=54.4
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
..+++||-||.|+...-+..++..-+.++|+++.+++.-+.++.. ..++..|+........ ....+|+++.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~---~~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL---RKSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc---cccCCCEEEe
Confidence 468999999999988888788888889999999888776666543 3456667655333110 1117899998
Q ss_pred ccchh
Q 021467 112 FQHLQ 116 (312)
Q Consensus 112 ~~~lh 116 (312)
.+..+
T Consensus 74 GpPCQ 78 (328)
T COG0270 74 GPPCQ 78 (328)
T ss_pred CCCCc
Confidence 77654
No 317
>PTZ00357 methyltransferase; Provisional
Probab=88.69 E-value=1.5 Score=44.39 Aligned_cols=107 Identities=19% Similarity=0.199 Sum_probs=68.2
Q ss_pred CEEEEECCCCCccHHHHHHc----C-CCeEEEEeCChHHHHHHHHHHHhc-CC-------CceEEEEEcCCCCCchhh--
Q 021467 33 VTVCDLYCGAGVDVDKWETA----L-IANYIGIDVATSGIGEARDTWENQ-RK-------NFIAEFFEADPCAENFET-- 97 (312)
Q Consensus 33 ~~VLDlGCG~G~~l~~~~~~----~-~~~v~giDis~~~i~~a~~r~~~~-~~-------~~~~~f~~~D~~~~~~~~-- 97 (312)
..|+=+|+|.|......+++ + ..++++|+-++.++.....+.... .. +.+++++..|+.......
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 35899999999776655544 2 237999999976554444443221 11 235899999998864321
Q ss_pred -h--hhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCC----CcE
Q 021467 98 -Q--MQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP----GGY 141 (312)
Q Consensus 98 -~--~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~Lkp----GG~ 141 (312)
. .+..-+++|+|++-. |- +|.+-+--.+.|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSEL-LG-SFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSEL-LG-SLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhh-hc-ccccccCCHHHHHHHHHhhhhhcccccc
Confidence 0 011124799998722 11 456666667788888888887 776
No 318
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.24 E-value=1.5 Score=40.71 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=56.5
Q ss_pred CCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
++.+||=.|||. |..+..+++. +..+++++|.+++-++.|++.- +.. ..|..+.++..... ..+.+|+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lG--------a~~-vi~~~~~~~~~~~~-~~g~~D~ 238 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMG--------ADK-LVNPQNDDLDHYKA-EKGYFDV 238 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcC--------CcE-EecCCcccHHHHhc-cCCCCCE
Confidence 678999999863 3344455554 4447999999999888776532 111 11222222211111 1245898
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|+-.-.- ...+....++|++||.++..
T Consensus 239 vid~~G~----------~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 239 SFEVSGH----------PSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 8754421 23456667789999999876
No 319
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=87.62 E-value=5.5 Score=37.34 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=62.2
Q ss_pred CCCEEEEECCCCCccH-HHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhc-CCcee
Q 021467 31 PYVTVCDLYCGAGVDV-DKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEK-ANQAD 107 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l-~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~-~~~fD 107 (312)
++.+|+=+|||+=|.+ ..+++. +..+++.+|.+++-++.|++..... .+.-...+.......... ...+|
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-------~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-------VVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-------EeecCccccHHHHHHHHhCCCCCC
Confidence 4459999999985555 444443 6789999999999999998865321 111111111111111111 23699
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+-.-. ....+..+.+++||||.+...
T Consensus 241 ~vie~~G----------~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 241 VVIEAVG----------SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred EEEECCC----------CHHHHHHHHHHhcCCCEEEEE
Confidence 9875553 223677888899999999877
No 320
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=86.64 E-value=1.7 Score=40.94 Aligned_cols=42 Identities=14% Similarity=0.010 Sum_probs=32.5
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHH
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARD 72 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~ 72 (312)
+-..|.|+|.|.|.....+.-...-.|++||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 446899999999966665555555689999999877776655
No 321
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=86.51 E-value=5.6 Score=34.67 Aligned_cols=98 Identities=23% Similarity=0.206 Sum_probs=59.7
Q ss_pred CCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh-hhcCCcee
Q 021467 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM-QEKANQAD 107 (312)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~-~~~~~~fD 107 (312)
.++.+||..|+|. |..+..+++....++++++.+++..+.+++... ... .|.........+ ......+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~-------~~~--~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA-------DHV--IDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC-------cee--ccCCcCCHHHHHHHhcCCCCC
Confidence 4788999999985 555556666555799999999887776644311 111 122121111111 11246799
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
+|+....- . ..+..+.+.|+++|.++...
T Consensus 204 ~vi~~~~~------~----~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 204 VVIDAVGG------P----ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEEECCCC------H----HHHHHHHHhcccCCEEEEEc
Confidence 98865421 1 34666778899999998763
No 322
>PRK10458 DNA cytosine methylase; Provisional
Probab=86.20 E-value=2.3 Score=41.54 Aligned_cols=81 Identities=11% Similarity=0.108 Sum_probs=51.9
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh-----------hhh
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET-----------QMQ 100 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~-----------~~~ 100 (312)
..+++|+-||.||...-+..++...+.++|+++.+.+.-+.++...+ ....+..|+.+..... .+.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p---~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~ 164 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDP---ATHRFNEDIRDITLSHKEGVSDEEAAEHIR 164 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCC---ccceeccChhhCccccccccchhhhhhhhh
Confidence 46999999999999888877788778899999877665555542111 1334556766543210 000
Q ss_pred hcCCceeEEEeccch
Q 021467 101 EKANQADLVCCFQHL 115 (312)
Q Consensus 101 ~~~~~fD~V~~~~~l 115 (312)
......|+++..+..
T Consensus 165 ~~~p~~DvL~gGpPC 179 (467)
T PRK10458 165 QHIPDHDVLLAGFPC 179 (467)
T ss_pred ccCCCCCEEEEcCCC
Confidence 011357998876654
No 323
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=86.13 E-value=3.6 Score=38.65 Aligned_cols=60 Identities=10% Similarity=0.041 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHc---------CCCeEEEEeCChHHHHHHHHHHHhc
Q 021467 18 EFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA---------LIANYIGIDVATSGIGEARDTWENQ 77 (312)
Q Consensus 18 n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~---------~~~~v~giDis~~~i~~a~~r~~~~ 77 (312)
.|+...+-+.-.+....++++|.|+|..+..+++. ...+|.-|++|++..+.-+++++..
T Consensus 64 ~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 64 EQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 55544433333335678999999999877666543 3568999999999988877776543
No 324
>PRK11524 putative methyltransferase; Provisional
Probab=85.24 E-value=1.1 Score=40.73 Aligned_cols=61 Identities=11% Similarity=0.178 Sum_probs=38.2
Q ss_pred EEEEEcCCCCCchhhhhhhcCCceeEEEeccchh----hh-----cC---CHHHHHHHHHHHHhccCCCcEEEEEec
Q 021467 83 AEFFEADPCAENFETQMQEKANQADLVCCFQHLQ----MC-----FE---TEERARRLLQNVSSLLKPGGYFLGITP 147 (312)
Q Consensus 83 ~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh----~~-----~~---~~~~~~~~l~~i~~~LkpGG~~i~~~p 147 (312)
..++++|+.+.- ..+ ++++||+|++.-... +. .. ..+-+...+.++.++|||||.+++.+.
T Consensus 9 ~~i~~gD~~~~l--~~l--~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 9 KTIIHGDALTEL--KKI--PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CEEEeccHHHHH--Hhc--ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 457788876521 112 457899999853311 00 00 012246789999999999999998643
No 325
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.90 E-value=7.1 Score=35.70 Aligned_cols=81 Identities=12% Similarity=0.087 Sum_probs=58.7
Q ss_pred CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch----hhhhhhcC
Q 021467 31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF----ETQMQEKA 103 (312)
Q Consensus 31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~----~~~~~~~~ 103 (312)
.+..||==|.|.|- .+..+++.+ ..++..|+.++..++..+..+..+ ++..+.+|+++..- ...+...-
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg-~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRG-AKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhC-CeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 57889999998882 223333334 489999999999999888887654 58899999988532 12233345
Q ss_pred CceeEEEeccch
Q 021467 104 NQADLVCCFQHL 115 (312)
Q Consensus 104 ~~fD~V~~~~~l 115 (312)
+..|+++.+.++
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 789999988764
No 326
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=84.45 E-value=17 Score=31.15 Aligned_cols=79 Identities=18% Similarity=0.121 Sum_probs=45.1
Q ss_pred CCCEEEEECCCC-CccHH-HHHHcCCCeEEEEeCCh-------------------HHHHHHHHHHHhcCCCceEEEEEcC
Q 021467 31 PYVTVCDLYCGA-GVDVD-KWETALIANYIGIDVAT-------------------SGIGEARDTWENQRKNFIAEFFEAD 89 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~-~~~~~~~~~v~giDis~-------------------~~i~~a~~r~~~~~~~~~~~f~~~D 89 (312)
.+.+||=+|||. |..+. .+...+..+++.+|.+. .-.+.+.++++..+...+++.+...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 99 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER 99 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence 457899999984 44333 44455888999999873 2223444555544433445444444
Q ss_pred CCCCchhhhhhhcCCceeEEEecc
Q 021467 90 PCAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
+....+.. .-..+|+|++..
T Consensus 100 i~~~~~~~----~~~~~D~Vi~~~ 119 (202)
T TIGR02356 100 VTAENLEL----LINNVDLVLDCT 119 (202)
T ss_pred CCHHHHHH----HHhCCCEEEECC
Confidence 43322211 125799987654
No 327
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=83.77 E-value=2.6 Score=32.88 Aligned_cols=84 Identities=23% Similarity=0.298 Sum_probs=53.3
Q ss_pred CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCCceeEEEeccchhhhcC
Q 021467 43 GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQADLVCCFQHLQMCFE 120 (312)
Q Consensus 43 G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~~fD~V~~~~~lh~~~~ 120 (312)
|..+..+++....+++++|.++.-++.+++.... .+ .|..+.++.+.+.. ....+|+|+-.-.
T Consensus 3 G~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~-------~~--~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD-------HV--IDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES-------EE--EETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred HHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc-------cc--ccccccccccccccccccccceEEEEecC------
Confidence 4445555665448999999999988888764311 12 22333334333322 1247999875542
Q ss_pred CHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 121 TEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 121 ~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
....++...++|++||.++..
T Consensus 68 ----~~~~~~~~~~~l~~~G~~v~v 88 (130)
T PF00107_consen 68 ----SGDTLQEAIKLLRPGGRIVVV 88 (130)
T ss_dssp ----SHHHHHHHHHHEEEEEEEEEE
T ss_pred ----cHHHHHHHHHHhccCCEEEEE
Confidence 134577777899999999987
No 328
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=83.56 E-value=6.1 Score=36.68 Aligned_cols=92 Identities=5% Similarity=-0.072 Sum_probs=55.5
Q ss_pred cCCCCEEEEECCCCCccH-HHHHHc--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467 29 SHPYVTVCDLYCGAGVDV-DKWETA--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l-~~~~~~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~ 105 (312)
..++.+||=+|||.=|.+ ..+++. +..+++++|.+++-++.|++ . + ... ..+ .+. ....
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~----~~~-~~~----~~~-----~~~g 222 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D----ETY-LID----DIP-----EDLA 222 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C----cee-ehh----hhh-----hccC
Confidence 357889999998754433 344443 45689999999887777754 1 1 111 111 110 1225
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+|+-.-.-. .....+....++|++||+++..
T Consensus 223 ~d~viD~~G~~-------~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 223 VDHAFECVGGR-------GSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CcEEEECCCCC-------ccHHHHHHHHHhCcCCcEEEEE
Confidence 88887433210 0134577777899999999865
No 329
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=83.23 E-value=9.8 Score=36.14 Aligned_cols=118 Identities=15% Similarity=0.070 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCCCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHh-------cCC-CceEEEEEcCC
Q 021467 20 AKTALIKIYSHPYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWEN-------QRK-NFIAEFFEADP 90 (312)
Q Consensus 20 vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~-------~~~-~~~~~f~~~D~ 90 (312)
+.++.-+.-+.++....|+|.|-|+.....+.. +...-+|+++....-+.|...... .+. ...+..++++.
T Consensus 181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 333333344568899999999999876655443 556778999887766665544322 122 34577888887
Q ss_pred CCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
........+ ....++|+++.+ .|+ ++...+ +.++..-+++|-+++-+
T Consensus 261 ~~~~~v~eI---~~eatvi~vNN~---~Fd-p~L~lr-~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 261 LDPKRVTEI---QTEATVIFVNNV---AFD-PELKLR-SKEILQKCKDGTRIISS 307 (419)
T ss_pred CCHHHHHHH---hhcceEEEEecc---cCC-HHHHHh-hHHHHhhCCCcceEecc
Confidence 665443222 356888888773 333 443333 34888899999998866
No 330
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=83.22 E-value=4.9 Score=39.09 Aligned_cols=117 Identities=15% Similarity=0.031 Sum_probs=68.4
Q ss_pred CCCEEEEECCCCCccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh--hhhhcCCcee
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET--QMQEKANQAD 107 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~--~~~~~~~~fD 107 (312)
.+..+|=+|-|.|+....+... +..+++++.+.++|++.|+..+.-.... +......|.... +.. +....+..||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~-~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDF-LQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHH-HHHHhhccccccCCc
Confidence 3467888888888665554333 5579999999999999998865321110 122222222110 000 0111356788
Q ss_pred EEEeccc---hhhh--cCCHHHHHHHHHHHHhccCCCcEEEEE--ecCh
Q 021467 108 LVCCFQH---LQMC--FETEERARRLLQNVSSLLKPGGYFLGI--TPDS 149 (312)
Q Consensus 108 ~V~~~~~---lh~~--~~~~~~~~~~l~~i~~~LkpGG~~i~~--~p~~ 149 (312)
++...-. .|-+ --..--+..+|..+...|.|-|.|++- ++|.
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 8765210 1111 111223578899999999999999876 4444
No 331
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=83.14 E-value=12 Score=37.95 Aligned_cols=103 Identities=12% Similarity=0.046 Sum_probs=66.3
Q ss_pred CEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 33 ~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
.+|+=+|+|. |..+.+.+......++.+|.+++.++.+++. + ...+.+|+++....... .-...|++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a--gi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY----G----YKVYYGDATQLELLRAA--GAEKAEAIVI 470 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----C----CeEEEeeCCCHHHHHhc--CCccCCEEEE
Confidence 5677788876 3344444444455899999999998887652 2 56789999886553322 2356787765
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (312)
Q Consensus 112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l 152 (312)
.. .+.+........ .+.+.|...++...-|....
T Consensus 471 ~~------~d~~~n~~i~~~-~r~~~p~~~IiaRa~~~~~~ 504 (601)
T PRK03659 471 TC------NEPEDTMKIVEL-CQQHFPHLHILARARGRVEA 504 (601)
T ss_pred Ee------CCHHHHHHHHHH-HHHHCCCCeEEEEeCCHHHH
Confidence 44 334434444443 45578888888887776554
No 332
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.88 E-value=13 Score=29.02 Aligned_cols=88 Identities=16% Similarity=0.113 Sum_probs=56.4
Q ss_pred CCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 32 YVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
..+|.++|-|.=-+..+.+......++++||.+. +.. .+ +.+..-|+++..+.- -...|+|.+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-~g----~~~v~DDitnP~~~i-----Y~~A~lIYS 76 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-EG----LRFVVDDITNPNISI-----YEGADLIYS 76 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-cc----ceEEEccCCCccHHH-----hhCccceee
Confidence 3499999998766666666555568999999875 222 23 789999999876521 245777764
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
.- ....+...+-.+++.++ ..+++.
T Consensus 77 iR-------pppEl~~~ildva~aVg--a~l~I~ 101 (129)
T COG1255 77 IR-------PPPELQSAILDVAKAVG--APLYIK 101 (129)
T ss_pred cC-------CCHHHHHHHHHHHHhhC--CCEEEE
Confidence 33 34445555555666554 344444
No 333
>PRK13699 putative methylase; Provisional
Probab=81.30 E-value=1.7 Score=38.26 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=35.2
Q ss_pred EEEEcCCCCCchhhhhhhcCCceeEEEeccchh----hh-------cCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 84 EFFEADPCAENFETQMQEKANQADLVCCFQHLQ----MC-------FETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 84 ~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh----~~-------~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
+++++|+.+. ...+ +++++|+|+..-..- +. -...+-....+.++.|+|||||.+++.+
T Consensus 3 ~l~~gD~le~--l~~l--pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 3 RFILGNCIDV--MARF--PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred eEEechHHHH--HHhC--CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 4566776542 1111 567788887753211 00 0112335688999999999999988643
No 334
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.91 E-value=34 Score=29.32 Aligned_cols=113 Identities=11% Similarity=-0.006 Sum_probs=62.6
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh-h---hhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-M---QEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~-~---~~~~~ 104 (312)
++.+||=.|++.| ..+.+.+.....+|++++-+++.++.+.+.....+ .+.++.+|+.+..-... + ...-+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 3568999998654 23333333344589999999887766555444322 37788999887432111 1 11124
Q ss_pred ceeEEEeccchhh--hcCCHH-----------HHHHHHHHHHhccCCCcEEEEEe
Q 021467 105 QADLVCCFQHLQM--CFETEE-----------RARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 105 ~fD~V~~~~~lh~--~~~~~~-----------~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
..|.++...+... .+...+ ....+++.+...++.+|.++.+.
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 5787766543210 001111 11233555666677788887664
No 335
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.66 E-value=21 Score=29.90 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=22.2
Q ss_pred EEEEECCCC-CccHHHH-HHcCCCeEEEEeCCh
Q 021467 34 TVCDLYCGA-GVDVDKW-ETALIANYIGIDVAT 64 (312)
Q Consensus 34 ~VLDlGCG~-G~~l~~~-~~~~~~~v~giDis~ 64 (312)
+|+=+|||. |..+.+. ...+..+++-+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 478899984 5544444 455788899999876
No 336
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=80.64 E-value=16 Score=33.96 Aligned_cols=99 Identities=10% Similarity=0.014 Sum_probs=59.0
Q ss_pred cCCCCEEEEECCC--CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCc
Q 021467 29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (312)
Q Consensus 29 ~~~~~~VLDlGCG--~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~ 105 (312)
..++.+||=.|++ -|..+..+++....++++++.+++-.+.+++.+... ..+..+ ...++...+.. ..+.
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~------~vi~~~-~~~~~~~~i~~~~~~g 228 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFD------EAFNYK-EEPDLDAALKRYFPEG 228 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCC------EEEECC-CcccHHHHHHHHCCCC
Confidence 4578899999983 455666677665568999999988776665333211 112111 01122221111 1246
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+|+-... ...+....++|++||+++..
T Consensus 229 vD~v~d~vG-----------~~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 229 IDIYFDNVG-----------GDMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred cEEEEECCC-----------HHHHHHHHHHhccCCEEEEE
Confidence 898875432 12456777899999999865
No 337
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=80.17 E-value=13 Score=34.51 Aligned_cols=94 Identities=11% Similarity=0.033 Sum_probs=54.3
Q ss_pred CCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeC---ChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDV---ATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (312)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDi---s~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~ 105 (312)
.++.+||=+|||. |..+..+++....++++++. ++.-++.+++ .+ +..+ |..+.+... .. ..+.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~G----a~~v--~~~~~~~~~-~~-~~~~ 238 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LG----ATYV--NSSKTPVAE-VK-LVGE 238 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cC----CEEe--cCCccchhh-hh-hcCC
Confidence 4678999999864 33444555554448999987 5665555543 22 2222 222222111 11 1256
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+|+-...- ...+....+.|++||.++..
T Consensus 239 ~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 239 FDLIIEATGV----------PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred CCEEEECcCC----------HHHHHHHHHHccCCcEEEEE
Confidence 8988755421 12466777899999998765
No 338
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=80.12 E-value=5.3 Score=36.66 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=56.5
Q ss_pred CCCEEEEECCCC-CccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 31 PYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
++.+||-.|||. |..+..+++... ..+++++.++...+.+++. .. -.++ |.....+.. +....+.+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g~------~~vi--~~~~~~~~~-~~~~~~~vd~ 234 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-GA------DETV--NLARDPLAA-YAADKGDFDV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC------CEEE--cCCchhhhh-hhccCCCccE
Confidence 678999998874 445555555544 3799999998887755442 11 0111 111111111 1112245999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
|+..... ...++.+.+.|+++|+++...
T Consensus 235 vld~~g~----------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 235 VFEASGA----------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEECCCC----------HHHHHHHHHHHhcCCEEEEEe
Confidence 8754321 234677788999999998653
No 339
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=79.74 E-value=15 Score=33.89 Aligned_cols=90 Identities=12% Similarity=-0.041 Sum_probs=54.4
Q ss_pred cCCCCEEEEECCCCCc-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 29 SHPYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
..++.+||=.|+|.-+ .+..+++....+++++|.+++-++.|++.-. +. ..|..+. ..+.+|
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga--------~~-vi~~~~~--------~~~~~d 225 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGA--------AS-AGGAYDT--------PPEPLD 225 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCC--------ce-ecccccc--------Ccccce
Confidence 4578899999986433 3344555545579999999888777665321 11 1111110 124578
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+++..-. . ...+....++|++||+++..
T Consensus 226 ~~i~~~~-------~---~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 226 AAILFAP-------A---GGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred EEEECCC-------c---HHHHHHHHHhhCCCcEEEEE
Confidence 6643221 1 12577777899999999876
No 340
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=79.61 E-value=6.5 Score=40.24 Aligned_cols=119 Identities=11% Similarity=0.200 Sum_probs=64.1
Q ss_pred CCCEEEEECCCCCccHH----HHHH---c-C-----CCeEEEEeCCh---HHHHHHHHHHHh----------------cC
Q 021467 31 PYVTVCDLYCGAGVDVD----KWET---A-L-----IANYIGIDVAT---SGIGEARDTWEN----------------QR 78 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~----~~~~---~-~-----~~~v~giDis~---~~i~~a~~r~~~----------------~~ 78 (312)
+..+|||+|-|+|.... .|.+ . . .-++++++..+ +-+..+.+.+.. .+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45799999999996332 2211 1 1 23899999643 444333221110 01
Q ss_pred --------CCceEEEEEcCCCCCchhhhhhhcCCceeEEEec-cchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 79 --------KNFIAEFFEADPCAENFETQMQEKANQADLVCCF-QHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 79 --------~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~-~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
.....+++.+|+.+ .++.-...+|++..- |+-.. ..+-=-..+++.++++++|||++.-- ..+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~-----~~~~~~~~~d~~~lD~FsP~~--np~~W~~~~~~~l~~~~~~~~~~~t~-t~a 208 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANE-----LLPQLDARADAWFLDGFAPAK--NPDMWSPNLFNALARLARPGATLATF-TSA 208 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHH-----HHHhccccccEEEeCCCCCcc--ChhhccHHHHHHHHHHhCCCCEEEEe-ehH
Confidence 01234555666543 122123569999864 22111 11111377899999999999988743 334
Q ss_pred hHHHHHHH
Q 021467 150 STIWAKYQ 157 (312)
Q Consensus 150 ~~l~~~~~ 157 (312)
..+.+-+.
T Consensus 209 ~~vr~~l~ 216 (662)
T PRK01747 209 GFVRRGLQ 216 (662)
T ss_pred HHHHHHHH
Confidence 44444443
No 341
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=79.60 E-value=15 Score=36.72 Aligned_cols=101 Identities=10% Similarity=0.013 Sum_probs=60.9
Q ss_pred CEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 33 ~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
.+|+=+|||. |..+.+.+......++.+|.+++.++.+++. + ...+.+|..+....... .-+..|.+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~----g----~~~i~GD~~~~~~L~~a--~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER----G----IRAVLGNAANEEIMQLA--HLDCARWLLL 487 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC----C----CeEEEcCCCCHHHHHhc--CccccCEEEE
Confidence 5678888886 3344444444445899999999988887642 2 66889999886543222 2257886654
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChh
Q 021467 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSS 150 (312)
Q Consensus 112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~ 150 (312)
.- .+.++.......+ +.+.|...++....+.+
T Consensus 488 ~~------~~~~~~~~iv~~~-~~~~~~~~iiar~~~~~ 519 (558)
T PRK10669 488 TI------PNGYEAGEIVASA-REKRPDIEIIARAHYDD 519 (558)
T ss_pred Ec------CChHHHHHHHHHH-HHHCCCCeEEEEECCHH
Confidence 32 1122222333333 44567777776665543
No 342
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.52 E-value=14 Score=33.60 Aligned_cols=97 Identities=19% Similarity=0.122 Sum_probs=56.2
Q ss_pred CCCCEEEEECCCC-CccHHHHHHcCCCe-EEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 30 HPYVTVCDLYCGA-GVDVDKWETALIAN-YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~~~~~~~~~~-v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
.++.+||-+|+|. |..+..+++....+ +++++.+++..+.+++.. +..+. +................+|
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g--------~~~~~-~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLG--------ATETV-DPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhC--------CeEEe-cCCCCCHHHHHHhcCCCCc
Confidence 4678999998652 44445555554444 899999988877774321 11111 1111111111111245799
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+.... ....+..+.+.|+++|+++..
T Consensus 229 ~v~~~~~----------~~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 229 VVIEATG----------VPKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred EEEECCC----------ChHHHHHHHHHHhcCCEEEEE
Confidence 9985431 123466677889999999865
No 343
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.42 E-value=15 Score=37.30 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=66.1
Q ss_pred CCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 32 YVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 32 ~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
..+|+=+|||. |..+...+......++.+|.+++.++.+++. + ...+.+|.++.+..... .-...|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a--gi~~A~~vv 469 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF----G----MKVFYGDATRMDLLESA--GAAKAEVLI 469 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc----C----CeEEEEeCCCHHHHHhc--CCCcCCEEE
Confidence 36799999997 4344444444445899999999998888652 2 56789999886653221 235778776
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l 152 (312)
+.. .+.+....... ..+.+.|.-.++...-|....
T Consensus 470 v~~------~d~~~n~~i~~-~ar~~~p~~~iiaRa~d~~~~ 504 (621)
T PRK03562 470 NAI------DDPQTSLQLVE-LVKEHFPHLQIIARARDVDHY 504 (621)
T ss_pred EEe------CCHHHHHHHHH-HHHHhCCCCeEEEEECCHHHH
Confidence 544 33333333333 445567777777777666443
No 344
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=78.26 E-value=8.2 Score=34.88 Aligned_cols=54 Identities=26% Similarity=0.343 Sum_probs=42.6
Q ss_pred HHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc
Q 021467 23 ALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQ 77 (312)
Q Consensus 23 ~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~ 77 (312)
.+|..+..++..|||-=+|+|..+.. +......++|+|++++.++.+.+|+...
T Consensus 214 r~i~~~s~~~diVlDpf~GsGtt~~a-a~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 214 RLIRDYSFPGDIVLDPFAGSGTTGIA-AKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHhcCCCCCEEeecCCCCChHHHH-HHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 34445777899999999999954444 4444558999999999999999998753
No 345
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=78.24 E-value=14 Score=34.56 Aligned_cols=98 Identities=16% Similarity=0.153 Sum_probs=55.8
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCc
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~ 105 (312)
+.++.+||=.|+|. |..+..+++... .+|+++|.+++-++.+++. + +.. ..|..+.++.+.+.. ..+.
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----G----a~~-~i~~~~~~~~~~i~~~~~~g 259 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----G----ATA-TVNAGDPNAVEQVRELTGGG 259 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----C----Cce-EeCCCchhHHHHHHHHhCCC
Confidence 34778899899763 333444555544 4799999999888877542 1 111 112222222221111 1236
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+|+-.-.- ...+....+.|++||.++..
T Consensus 260 ~d~vid~~G~----------~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 260 VDYAFEMAGS----------VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred CCEEEECCCC----------hHHHHHHHHHHhcCCEEEEE
Confidence 8988753311 12455666789999998865
No 346
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=77.93 E-value=40 Score=29.21 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=44.6
Q ss_pred CCCEEEEECCCC-CccH-HHHHHcCCCeEEEEeCCh------------------HHHHHHHHHHHhcCCCceEEEEEcCC
Q 021467 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVAT------------------SGIGEARDTWENQRKNFIAEFFEADP 90 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l-~~~~~~~~~~v~giDis~------------------~~i~~a~~r~~~~~~~~~~~f~~~D~ 90 (312)
...+|+=+|||. |..+ ..+...+..+++.+|.+. .-.+.+.+++...+...+++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 467999999984 5444 344455888899999872 12234445554443334455555444
Q ss_pred CCCchhhhhhhcCCceeEEEec
Q 021467 91 CAENFETQMQEKANQADLVCCF 112 (312)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~ 112 (312)
......+ .-..+|+|+..
T Consensus 107 ~~~~~~~----~~~~~DvVI~a 124 (212)
T PRK08644 107 DEDNIEE----LFKDCDIVVEA 124 (212)
T ss_pred CHHHHHH----HHcCCCEEEEC
Confidence 4322211 12468988754
No 347
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=77.49 E-value=6.3 Score=39.02 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=60.3
Q ss_pred CCCEEEEECCCCCc-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-------------Cchh
Q 021467 31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-------------ENFE 96 (312)
Q Consensus 31 ~~~~VLDlGCG~G~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~-------------~~~~ 96 (312)
++.+||=+|||.=| .+..+++.....++++|.+++.++.++. + + .+++..|..+ .++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-l---G----a~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-M---G----AEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c---C----CeEEeccccccccccccceeecCHHHH
Confidence 56899999999744 3344445444579999999998777665 2 2 2333333211 0110
Q ss_pred h----hhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 97 T----QMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 97 ~----~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
. .+...-..+|+|++.-.+.- .....-..+++.+.+|||+.++=.
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG----~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPG----KPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCC----CCCCeeehHHHHhhCCCCCEEEEe
Confidence 0 01112356999977653221 112233567778899999987744
No 348
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.05 E-value=19 Score=33.39 Aligned_cols=100 Identities=19% Similarity=0.170 Sum_probs=61.0
Q ss_pred cCCCCEEEEECC-CCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCC-CCchhhh-hhhcCCc
Q 021467 29 SHPYVTVCDLYC-GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPC-AENFETQ-MQEKANQ 105 (312)
Q Consensus 29 ~~~~~~VLDlGC-G~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~-~~~~~~~-~~~~~~~ 105 (312)
+.|+.+|-=+|- |-|....+++++-..+|+++|-+...-++|-+++... .|+ |.+ +.+.-.. ...-++-
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd------~fv--~~~~d~d~~~~~~~~~dg~ 250 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGAD------VFV--DSTEDPDIMKAIMKTTDGG 250 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcc------eeE--EecCCHHHHHHHHHhhcCc
Confidence 447887777764 5787888998886679999999987666666655321 122 222 2121111 1112455
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE-ecC
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI-TPD 148 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~-~p~ 148 (312)
.|-|+.. +-| .+.-+.+.||++|.++.. .|.
T Consensus 251 ~~~v~~~-a~~-----------~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 251 IDTVSNL-AEH-----------ALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred ceeeeec-ccc-----------chHHHHHHhhcCCEEEEEeCcC
Confidence 5655533 333 356667799999999987 444
No 349
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=77.04 E-value=37 Score=28.23 Aligned_cols=100 Identities=17% Similarity=0.130 Sum_probs=67.0
Q ss_pred CCCCEEEEECCCCCccHHHHHH--cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCc-hhhhhhhcCCce
Q 021467 30 HPYVTVCDLYCGAGVDVDKWET--ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAEN-FETQMQEKANQA 106 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~--~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~-~~~~~~~~~~~f 106 (312)
.++.+|+=|||=+- ...+.. ....+++-.|++ .|+...+. + .|..-|..... +... -.++|
T Consensus 24 ~~~~~iaclstPsl--~~~l~~~~~~~~~~~Lle~D--------~RF~~~~~--~-~F~fyD~~~p~~~~~~---l~~~~ 87 (162)
T PF10237_consen 24 LDDTRIACLSTPSL--YEALKKESKPRIQSFLLEYD--------RRFEQFGG--D-EFVFYDYNEPEELPEE---LKGKF 87 (162)
T ss_pred CCCCEEEEEeCcHH--HHHHHhhcCCCccEEEEeec--------chHHhcCC--c-ceEECCCCChhhhhhh---cCCCc
Confidence 35689999999763 333333 245589999998 45555331 1 36666665432 1111 24799
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
|+|++--. |.+++-+......+..++|+++.++.+++..
T Consensus 88 d~vv~DPP----Fl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 88 DVVVIDPP----FLSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred eEEEECCC----CCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 99999874 3567777778888888889999999887655
No 350
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=76.74 E-value=16 Score=34.03 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=55.9
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~ 104 (312)
+.++.+||=.|||. |..+..+++. +..+|+++|.+++-++.+++.- . -.++ |..+.+....+.. ...
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~G-a------~~~i--~~~~~~~~~~i~~~~~~~ 244 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFG-A------THTV--NSSGTDPVEAIRALTGGF 244 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcC-C------ceEE--cCCCcCHHHHHHHHhCCC
Confidence 34788999998753 3334445555 4446999999998888775421 1 1111 2222222211111 124
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
.+|+|+-.-. . ...+....+.|++||+++..
T Consensus 245 g~d~vid~~g------~----~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 245 GADVVIDAVG------R----PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCCEEEECCC------C----HHHHHHHHHHhccCCEEEEE
Confidence 6898874331 1 12355566789999999866
No 351
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=76.55 E-value=18 Score=32.60 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=59.5
Q ss_pred CCCCEEEEECCCCCccHHHHHHc------CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcC
Q 021467 30 HPYVTVCDLYCGAGVDVDKWETA------LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKA 103 (312)
Q Consensus 30 ~~~~~VLDlGCG~G~~l~~~~~~------~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~ 103 (312)
.++..++|+|||+|.....+... ....++.||-...-. .+-.+.........++-+..|+.+.++........
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l~~~~~~~~ 95 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDLSKLPELQN 95 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccchhhcccccC
Confidence 46789999999999554444332 235789999865322 22222322221134677788888777644332111
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHHhc----cCCCcEEEEEecCh
Q 021467 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSL----LKPGGYFLGITPDS 149 (312)
Q Consensus 104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~----LkpGG~~i~~~p~~ 149 (312)
..-.+|.. +-|-+-...+-.-..+.+.... .++.|.+|.+....
T Consensus 96 ~~~~vv~i--sKHLCG~ATDlaLRcl~~~~~~~~~~~~~~gi~iA~CCHH 143 (259)
T PF05206_consen 96 DEKPVVAI--SKHLCGAATDLALRCLLNSQKLSEGNGSVRGIVIAPCCHH 143 (259)
T ss_pred CCCcEEEE--EccccccchhHHHHhhccCccccccCCccCeEEEEeCCCC
Confidence 11122221 2333322222222333333332 45789888885444
No 352
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=76.37 E-value=5 Score=43.36 Aligned_cols=98 Identities=13% Similarity=-0.022 Sum_probs=56.8
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
....+||+|.|.-.-+..+.- ....|+.+|+-+-+ .........-.|+++|-...... ...++|.++
T Consensus 822 ~~~~~lDLGTGPE~RiLsliP-~~~pvtmvD~RP~a-------e~m~~w~t~T~y~~~DYl~~~~~-----~~~~~D~vt 888 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLIP-PDTPVTMVDTRPFA-------EPMNCWNTQTQYIQADYLSDAWW-----NGTPFDAVT 888 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS--TTSEEEEEESS--S-------SSCCCCSTTEEEEES-TTSCCGG-----CC---SEEE
T ss_pred CcceEEEccCCccceeeeccC-CCCceEEEecCCcc-------cccchhhhcceeeeeccccceeE-----ecCCCCEEE
Confidence 357899999988633332222 34589999997632 11112234478999998876653 357899999
Q ss_pred eccchhhhc-CCHHHHHHHHHHHHhccCCCcE
Q 021467 111 CFQHLQMCF-ETEERARRLLQNVSSLLKPGGY 141 (312)
Q Consensus 111 ~~~~lh~~~-~~~~~~~~~l~~i~~~LkpGG~ 141 (312)
|.++|..++ ..--.+.+.++++.+.+++.|.
T Consensus 889 ailSLGAAaA~a~~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 889 AILSLGAAAASANVTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp ECTCHHHHHHHCT--HHHHHHHHHHHHHCTT-
T ss_pred EEeeehhhhhcCCCcHHHHHHHHHHHHHhCCc
Confidence 999886643 3334567888888888887665
No 353
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=76.35 E-value=30 Score=31.41 Aligned_cols=96 Identities=20% Similarity=0.121 Sum_probs=57.9
Q ss_pred cCCCCEEEEECCC-CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 29 SHPYVTVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 29 ~~~~~~VLDlGCG-~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
..++.+||-.||| .|..+..+++....++++++.+++.++.+++.. . ...+.. ........ ..+.+|
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g-~------~~~~~~--~~~~~~~~---~~~~~d 227 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLG-A------DEVVDS--GAELDEQA---AAGGAD 227 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC-C------cEEecc--CCcchHHh---ccCCCC
Confidence 3467889999886 555555666665558999999998887774321 1 111111 11111101 124689
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
+++.... ....+..+.+.|+++|.++...
T Consensus 228 ~vi~~~~----------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 228 VILVTVV----------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EEEECCC----------cHHHHHHHHHhcccCCEEEEEC
Confidence 8875431 1124666778999999998763
No 354
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=76.29 E-value=2.7 Score=40.26 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=48.5
Q ss_pred hcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCce-EEEEEcCC
Q 021467 28 YSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFI-AEFFEADP 90 (312)
Q Consensus 28 ~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~-~~f~~~D~ 90 (312)
+.+++..|.|+.||-|-......+.+ +.|++-|+.++|++..+...+-+..... ++....|+
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence 45688999999999998777776656 6999999999999999988776543332 56666654
No 355
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=75.77 E-value=45 Score=28.59 Aligned_cols=98 Identities=20% Similarity=0.203 Sum_probs=54.7
Q ss_pred CCCEEEEECCCC-Ccc-HHHHHHcCCCeEEEEeCC---hHHHHH---------------HHHHHHhcCCCceEEEEEcCC
Q 021467 31 PYVTVCDLYCGA-GVD-VDKWETALIANYIGIDVA---TSGIGE---------------ARDTWENQRKNFIAEFFEADP 90 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~-l~~~~~~~~~~v~giDis---~~~i~~---------------a~~r~~~~~~~~~~~f~~~D~ 90 (312)
...+|+=+|||. |.. +..++..+..+++.+|.+ ...+.. +++++...+...++..+..++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i 99 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEKI 99 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeC
Confidence 357899999984 433 334445577789999988 433321 222333322223445555555
Q ss_pred CCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCC
Q 021467 91 CAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKP 138 (312)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~Lkp 138 (312)
....+... -..+|+|+... ++.+....++..+.+..+.
T Consensus 100 ~~~~~~~~----~~~~DlVi~a~------Dn~~~k~~l~~~~~~~~~~ 137 (200)
T TIGR02354 100 TEENIDKF----FKDADIVCEAF------DNAEAKAMLVNAVLEKYKD 137 (200)
T ss_pred CHhHHHHH----hcCCCEEEECC------CCHHHHHHHHHHHHHHcCC
Confidence 44332211 24689888553 4445455556677777664
No 356
>PRK08267 short chain dehydrogenase; Provisional
Probab=75.71 E-value=39 Score=29.52 Aligned_cols=79 Identities=9% Similarity=-0.092 Sum_probs=48.0
Q ss_pred CEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh-h---hhc-CCc
Q 021467 33 VTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-M---QEK-ANQ 105 (312)
Q Consensus 33 ~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~-~---~~~-~~~ 105 (312)
.++|=.|++.| ..+.+.+.....+|+.+|.+++.++........ .++.++++|+.+..-... + ... .++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGA----GNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 36788887654 222222223445899999998887776555432 237889999987442111 1 111 467
Q ss_pred eeEEEeccch
Q 021467 106 ADLVCCFQHL 115 (312)
Q Consensus 106 fD~V~~~~~l 115 (312)
.|+|+...+.
T Consensus 78 id~vi~~ag~ 87 (260)
T PRK08267 78 LDVLFNNAGI 87 (260)
T ss_pred CCEEEECCCC
Confidence 8988876654
No 357
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=75.26 E-value=6.7 Score=31.17 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=47.2
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
+..+|.++|-|.=....+.++.....|+++|+.+. ... .+ +.++.-|+++.++.- -...|+|.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-~g----~~~v~DDif~P~l~i-----Y~~a~lIY 75 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-EG----VNFVVDDIFNPNLEI-----YEGADLIY 75 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S------------S----TTEE---SSS--HHH-----HTTEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-cC----cceeeecccCCCHHH-----hcCCcEEE
Confidence 34599999999876555555544469999999987 111 22 568889998866521 25688987
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
+.-. ...+...+.++++.+ |.-+++..-..
T Consensus 76 SiRP-------P~El~~~il~lA~~v--~adlii~pL~~ 105 (127)
T PF03686_consen 76 SIRP-------PPELQPPILELAKKV--GADLIIRPLGG 105 (127)
T ss_dssp EES---------TTSHHHHHHHHHHH--T-EEEEE-BTT
T ss_pred EeCC-------ChHHhHHHHHHHHHh--CCCEEEECCCC
Confidence 6543 223444555555544 45566664443
No 358
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=75.21 E-value=9.9 Score=36.65 Aligned_cols=86 Identities=14% Similarity=0.040 Sum_probs=53.4
Q ss_pred CCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
++.+|+=+|||. |..+...++....+|+.+|+++.-.+.|+.- + +... +. .+. -...|+|
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G----~~~~--~~-----~e~----v~~aDVV 261 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----G----YEVM--TM-----EEA----VKEGDIF 261 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----C----CEEc--cH-----HHH----HcCCCEE
Confidence 689999999997 4344444555445899999998877666542 2 1111 11 111 1357998
Q ss_pred EeccchhhhcCCHHHHHHHHH-HHHhccCCCcEEEEE
Q 021467 110 CCFQHLQMCFETEERARRLLQ-NVSSLLKPGGYFLGI 145 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~-~i~~~LkpGG~~i~~ 145 (312)
+..-.- ...+. ...+.+|+||+++..
T Consensus 262 I~atG~----------~~~i~~~~l~~mk~Ggilvnv 288 (413)
T cd00401 262 VTTTGN----------KDIITGEHFEQMKDGAIVCNI 288 (413)
T ss_pred EECCCC----------HHHHHHHHHhcCCCCcEEEEe
Confidence 764321 12333 347799999999866
No 359
>PRK09242 tropinone reductase; Provisional
Probab=75.14 E-value=56 Score=28.46 Aligned_cols=84 Identities=11% Similarity=0.021 Sum_probs=51.1
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~ 104 (312)
.+.++|=.|++.| ..+...+.....+|+.++.+.+.++...+.........++.++.+|+.+..-.. .....-+
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4678999998655 233333333445899999998887776665543311234788899997743211 1111236
Q ss_pred ceeEEEeccc
Q 021467 105 QADLVCCFQH 114 (312)
Q Consensus 105 ~fD~V~~~~~ 114 (312)
+.|+|+....
T Consensus 88 ~id~li~~ag 97 (257)
T PRK09242 88 GLHILVNNAG 97 (257)
T ss_pred CCCEEEECCC
Confidence 7898876654
No 360
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=75.01 E-value=16 Score=33.19 Aligned_cols=95 Identities=13% Similarity=0.094 Sum_probs=55.6
Q ss_pred CEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc----------CCC---------ceEEEEEcCCCC
Q 021467 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQ----------RKN---------FIAEFFEADPCA 92 (312)
Q Consensus 33 ~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~----------~~~---------~~~~f~~~D~~~ 92 (312)
.+|.=+|+|. |..+...+.....+|+.+|.+++.++.++++.... +.. .++.+ ..|
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~--- 79 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STS--- 79 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCC---
Confidence 3678889985 43333333333448999999999998877654431 000 00000 011
Q ss_pred CchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467 93 ENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (312)
Q Consensus 93 ~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i 143 (312)
. . .-...|+|+..- .++.+....+++++.+.++|+.+++
T Consensus 80 --~-~----~~~~aDlVieav-----~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 80 --Y-E----SLSDADFIVEAV-----PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred --H-H----HhCCCCEEEEcC-----cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 0 114478877543 2444556788899999998887654
No 361
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=74.58 E-value=29 Score=29.18 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=56.8
Q ss_pred EEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-------CC---------CceEEEEEcCCCCCchh
Q 021467 34 TVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RK---------NFIAEFFEADPCAENFE 96 (312)
Q Consensus 34 ~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~-------~~---------~~~~~f~~~D~~~~~~~ 96 (312)
+|.=+|+|. |..+..+....+.+|+.+|.+++.++.++++.... +. ..++. ...|+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~---- 75 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEE---- 75 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGG----
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHH----
Confidence 356688876 32333333334569999999999999998876541 10 00122 1222111
Q ss_pred hhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
- ...|+|+=. ..++.+..+.+++++.+.+.|+-+|.-.+
T Consensus 76 -----~-~~adlViEa-----i~E~l~~K~~~~~~l~~~~~~~~ilasnT 114 (180)
T PF02737_consen 76 -----A-VDADLVIEA-----IPEDLELKQELFAELDEICPPDTILASNT 114 (180)
T ss_dssp -----G-CTESEEEE------S-SSHHHHHHHHHHHHCCS-TTSEEEE--
T ss_pred -----H-hhhheehhh-----ccccHHHHHHHHHHHHHHhCCCceEEecC
Confidence 1 267777633 34788889999999999999987766543
No 362
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=74.43 E-value=12 Score=32.79 Aligned_cols=66 Identities=15% Similarity=-0.011 Sum_probs=47.7
Q ss_pred CCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh
Q 021467 31 PYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ 98 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~ 98 (312)
.+.-|.+||.|.||....++.++..++..++++...+.-.+--.+... .+....++|+....+.+.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR~~I~~~ 115 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLRFKIEKA 115 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccceehHHhh
Confidence 357899999999999999999888899999998877665544333222 236667778766554433
No 363
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=74.29 E-value=20 Score=32.75 Aligned_cols=90 Identities=17% Similarity=0.199 Sum_probs=52.2
Q ss_pred CEEEEECCCC-CccHH-HHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 33 VTVCDLYCGA-GVDVD-KWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 33 ~~VLDlGCG~-G~~l~-~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.+|.=||+|. |+.+. .+...+. .+|+++|.+++.++.+++. +. ......+ ... .-...|+|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~---~~~~~~~-----~~~----~~~~aDvV 70 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GL---GDRVTTS-----AAE----AVKGADLV 70 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CC---CceecCC-----HHH----HhcCCCEE
Confidence 5788899987 33333 3333332 4899999999877766432 11 0001111 111 12457988
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+..-... ....+++.+...+++|+.++..
T Consensus 71 iiavp~~-------~~~~v~~~l~~~l~~~~iv~dv 99 (307)
T PRK07502 71 ILCVPVG-------ASGAVAAEIAPHLKPGAIVTDV 99 (307)
T ss_pred EECCCHH-------HHHHHHHHHHhhCCCCCEEEeC
Confidence 7655332 2466777888889998866544
No 364
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=74.25 E-value=8.4 Score=35.65 Aligned_cols=77 Identities=13% Similarity=0.117 Sum_probs=50.2
Q ss_pred EEECCCCCccHHHHHH-c--CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCceeEEEe
Q 021467 36 CDLYCGAGVDVDKWET-A--LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQADLVCC 111 (312)
Q Consensus 36 LDlGCG~G~~l~~~~~-~--~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~fD~V~~ 111 (312)
+|||.|.- ...++. + .....+++|+..-.+..|.+...+++....+..++....+.-+-+.+.. ++..||.+.|
T Consensus 107 iDIgtgas--ci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 107 IDIGTGAS--CIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeccCchh--hhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 78887764 444432 2 3357899999999999999999888766566666654432222222211 2456999988
Q ss_pred ccc
Q 021467 112 FQH 114 (312)
Q Consensus 112 ~~~ 114 (312)
+-.
T Consensus 185 NPP 187 (419)
T KOG2912|consen 185 NPP 187 (419)
T ss_pred CCc
Confidence 765
No 365
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=73.99 E-value=24 Score=32.30 Aligned_cols=94 Identities=11% Similarity=-0.010 Sum_probs=55.6
Q ss_pred CEEEEECC--CCCccHHHHHHcCCC-eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCceeE
Q 021467 33 VTVCDLYC--GAGVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQADL 108 (312)
Q Consensus 33 ~~VLDlGC--G~G~~l~~~~~~~~~-~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~fD~ 108 (312)
.+||=.|+ |-|..+..+++.... ++++++.+++..+.+++.+.. -.++. ..+.++...+.. ..+.+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa------~~vi~--~~~~~~~~~i~~~~~~gvd~ 227 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF------DAAIN--YKTDNVAERLRELCPEGVDV 227 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC------cEEEE--CCCCCHHHHHHHHCCCCceE
Confidence 78998886 345455666666554 799999998877776654321 11121 122223222211 1256999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|+....- ..+....++|+++|+++..
T Consensus 228 vid~~g~-----------~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 228 YFDNVGG-----------EISDTVISQMNENSHIILC 253 (345)
T ss_pred EEECCCc-----------HHHHHHHHHhccCCEEEEE
Confidence 8754321 1245667899999999865
No 366
>PRK08324 short chain dehydrogenase; Validated
Probab=72.99 E-value=23 Score=36.46 Aligned_cols=112 Identities=14% Similarity=0.031 Sum_probs=64.6
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~ 104 (312)
++.+||=.|++.| ..+.+.+.....+|+++|.++..++.+.+..... ..+.++.+|+.+..-.. ......+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4578998886444 3333333334458999999998877666554332 23788899988743211 1111235
Q ss_pred ceeEEEeccchhhh--c--CCHHH-----------HHHHHHHHHhccCC---CcEEEEE
Q 021467 105 QADLVCCFQHLQMC--F--ETEER-----------ARRLLQNVSSLLKP---GGYFLGI 145 (312)
Q Consensus 105 ~fD~V~~~~~lh~~--~--~~~~~-----------~~~~l~~i~~~Lkp---GG~~i~~ 145 (312)
..|+|+...+.-.. + .+.+. ...+++.+.+.++. ||.++.+
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~v 556 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFI 556 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 78998876652110 0 01111 23455666666666 6777766
No 367
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=72.88 E-value=32 Score=31.57 Aligned_cols=99 Identities=11% Similarity=0.049 Sum_probs=59.0
Q ss_pred cCCCCEEEEECC--CCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCc
Q 021467 29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (312)
Q Consensus 29 ~~~~~~VLDlGC--G~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~ 105 (312)
..++.+||=.|+ |-|..+..+++....++++++.+++..+.+++.+... .++..+ ...++...+.. ..+.
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~------~vi~~~-~~~~~~~~i~~~~~~g 221 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFD------DAFNYK-EEPDLDAALKRYFPNG 221 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCc------eeEEcC-CcccHHHHHHHhCCCC
Confidence 457889999886 3455556666665568999999988877776543211 112111 01122211111 1256
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+|+-... ...+....++|+++|.++..
T Consensus 222 vd~v~d~~g-----------~~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 222 IDIYFDNVG-----------GKMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred cEEEEECCC-----------HHHHHHHHHHhccCcEEEEe
Confidence 898875432 13466778899999999865
No 368
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=72.75 E-value=35 Score=31.03 Aligned_cols=98 Identities=11% Similarity=-0.018 Sum_probs=57.3
Q ss_pred cCCCCEEEEECC--CCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh-hcCCc
Q 021467 29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQ 105 (312)
Q Consensus 29 ~~~~~~VLDlGC--G~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~-~~~~~ 105 (312)
..++.+||=.|. |-|..+..+++....++++++.+++..+.+++ + +. -..+..+-. ..+...+. ...+.
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-l---Ga---~~vi~~~~~-~~~~~~~~~~~~~g 207 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-L---GF---DVAFNYKTV-KSLEETLKKASPDG 207 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c---CC---CEEEecccc-ccHHHHHHHhCCCC
Confidence 457889998884 34556666666655689999999887777643 2 21 011111110 11111111 11246
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+|+-...- ..+....++|++||+++..
T Consensus 208 vdvv~d~~G~-----------~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 208 YDCYFDNVGG-----------EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred eEEEEECCCH-----------HHHHHHHHHhCcCcEEEEe
Confidence 9998754311 1246677899999999865
No 369
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=72.39 E-value=30 Score=31.66 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=55.3
Q ss_pred CCCCEEEEECCCC-CccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCCc
Q 021467 30 HPYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQ 105 (312)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~~ 105 (312)
.++.+||-.|+|. |..+..+++... ..+++++.++...+.+++.- . ..++ +.....+...+. ...+.
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g-~------~~vi--~~~~~~~~~~i~~~~~~~~ 236 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAG-A------TDII--NPKNGDIVEQILELTGGRG 236 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhC-C------cEEE--cCCcchHHHHHHHHcCCCC
Confidence 4678999987652 444455555544 47899988887776655321 0 1122 111222222111 12357
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+|+....- ...+..+.+.|+++|+++..
T Consensus 237 ~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 237 VDCVIEAVGF----------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CcEEEEccCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 9988753311 13567777899999998865
No 370
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=72.26 E-value=7 Score=37.22 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=46.0
Q ss_pred ceEEEEEcCCCCCchhhhhh-hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 81 FIAEFFEADPCAENFETQMQ-EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 81 ~~~~f~~~D~~~~~~~~~~~-~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
.+++++++++.+. +. .+++++|.++....+-| -+.+.+.+.++.+.+.++|||+++.-
T Consensus 275 drv~i~t~si~~~-----L~~~~~~s~~~~vL~D~~Dw--m~~~~~~~~~~~l~~~~~pgaRV~~R 333 (380)
T PF11899_consen 275 DRVRIHTDSIEEV-----LRRLPPGSFDRFVLSDHMDW--MDPEQLNEEWQELARTARPGARVLWR 333 (380)
T ss_pred CeEEEEeccHHHH-----HHhCCCCCeeEEEecchhhh--CCHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 4477777765441 21 14689999999998887 56799999999999999999999976
No 371
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=71.50 E-value=20 Score=33.26 Aligned_cols=44 Identities=16% Similarity=0.085 Sum_probs=32.2
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHH
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARD 72 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~ 72 (312)
..++.+||=+|||. |..+..+++....+++++|.+++-++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 35788999999965 444455555544589999999998887754
No 372
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=71.44 E-value=42 Score=30.70 Aligned_cols=96 Identities=16% Similarity=0.121 Sum_probs=53.9
Q ss_pred CCCCEEEEECCCC-CccHHHHHHcCCCe-EEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh-h-cCCc
Q 021467 30 HPYVTVCDLYCGA-GVDVDKWETALIAN-YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-E-KANQ 105 (312)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~~~~~~~~~~-v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~-~-~~~~ 105 (312)
.++.+||=+|+|. |..+..+++....+ ++++|.+++-++.+++.-. ..++ |..+.. ...+. . ....
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga-------~~~i--~~~~~~-~~~~~~~~~~~~ 231 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA-------DFVI--NSGQDD-VQEIRELTSGAG 231 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC-------CEEE--cCCcch-HHHHHHHhCCCC
Confidence 4688999998753 22334445543345 9999999888777644211 0111 221111 11111 0 2347
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+|+-... -...+....+.|+++|.++..
T Consensus 232 ~d~vid~~g----------~~~~~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 232 ADVAIECSG----------NTAARRLALEAVRPWGRLVLV 261 (339)
T ss_pred CCEEEECCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 999874431 122345566789999999866
No 373
>PLN02740 Alcohol dehydrogenase-like
Probab=71.10 E-value=30 Score=32.57 Aligned_cols=100 Identities=15% Similarity=0.194 Sum_probs=55.0
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCc
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~ 105 (312)
+.++.+||=+|||. |..+..+++... .+|+++|.+++-++.|++. +. -.++..+-.+.++...+.. ..+.
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga---~~~i~~~~~~~~~~~~v~~~~~~g 268 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GI---TDFINPKDSDKPVHERIREMTGGG 268 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CC---cEEEecccccchHHHHHHHHhCCC
Confidence 34788999999864 223344455443 4799999999888877542 11 1122211111112221111 1236
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG-G~~i~~ 145 (312)
+|+|+-.-.- ...+......+++| |.++..
T Consensus 269 ~dvvid~~G~----------~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 269 VDYSFECAGN----------VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred CCEEEECCCC----------hHHHHHHHHhhhcCCCEEEEE
Confidence 9998754421 12455566688886 887755
No 374
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=70.99 E-value=23 Score=31.64 Aligned_cols=94 Identities=15% Similarity=0.063 Sum_probs=53.5
Q ss_pred CCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCCce
Q 021467 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQA 106 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~~f 106 (312)
++.+||=+|+|. |..+..+++. +..+++++|.+++-++.|++.-.. ..+ |.... ...+. .....+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~-------~~i--~~~~~--~~~~~~~~~~~g~ 188 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT-------ALA--EPEVL--AERQGGLQNGRGV 188 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc-------Eec--Cchhh--HHHHHHHhCCCCC
Confidence 678999998763 2233444444 444599999998877766553211 111 11111 11110 022468
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|+|+-.-. ....+..+.+.|+++|+++..
T Consensus 189 d~vid~~G----------~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 189 DVALEFSG----------ATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred CEEEECCC----------ChHHHHHHHHHhcCCCEEEEe
Confidence 98875431 123466677899999999865
No 375
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=70.81 E-value=12 Score=33.38 Aligned_cols=107 Identities=12% Similarity=0.024 Sum_probs=57.1
Q ss_pred CCEEEEECCCCCccHHHHH---Hc---CCCeEEEEeCC--------------------------hHHHHHHHHHHHhcCC
Q 021467 32 YVTVCDLYCGAGVDVDKWE---TA---LIANYIGIDVA--------------------------TSGIGEARDTWENQRK 79 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~---~~---~~~~v~giDis--------------------------~~~i~~a~~r~~~~~~ 79 (312)
...|+|.||-.|+.+..+. .. ...++++.|.= ..+++..++++...+.
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 3689999999997654432 22 24578888841 1133444444433221
Q ss_pred -CceEEEEEcCCCCCchhhhhhh-cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 80 -NFIAEFFEADPCAENFETQMQE-KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 80 -~~~~~f~~~D~~~~~~~~~~~~-~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
..++.++.+...+ .+ +. +..++-++.+ -..-.+.....|..+...|.|||++++--.+.
T Consensus 155 ~~~~v~~vkG~F~d-TL----p~~p~~~IAll~l------D~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 155 LDDNVRFVKGWFPD-TL----PDAPIERIALLHL------DCDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp SSTTEEEEES-HHH-HC----CC-TT--EEEEEE---------SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CcccEEEECCcchh-hh----ccCCCccEEEEEE------eccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 2358888887532 11 10 1233333322 23446678899999999999999999874443
No 376
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=70.19 E-value=18 Score=32.99 Aligned_cols=85 Identities=12% Similarity=-0.020 Sum_probs=51.2
Q ss_pred CCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
++.+||=+|||. |..+..+++. +...++++|.+++.++.|.+.. . .|..+. ....+|+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~----------~--i~~~~~--------~~~g~Dv 203 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE----------V--LDPEKD--------PRRDYRA 203 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc----------c--cChhhc--------cCCCCCE
Confidence 567899888874 3344555555 5545778899887666554310 1 111110 1246898
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|+-.-.- ...+..+.+.|++||+++..
T Consensus 204 vid~~G~----------~~~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 204 IYDASGD----------PSLIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred EEECCCC----------HHHHHHHHHhhhcCcEEEEE
Confidence 8755421 12456677799999999866
No 377
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=70.02 E-value=42 Score=30.18 Aligned_cols=86 Identities=13% Similarity=0.018 Sum_probs=50.4
Q ss_pred EEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEec
Q 021467 34 TVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF 112 (312)
Q Consensus 34 ~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~ 112 (312)
+|.=||+|. |+.+...+.....+|+++|.+++.++.+.+.. . +. ....+.. .-...|+|+..
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g----~---~~-----~~~~~~~-----~~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERG----L---VD-----EASTDLS-----LLKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC----C---cc-----cccCCHh-----HhcCCCEEEEc
Confidence 466688885 43333333333448999999998887775531 0 11 0111110 12457888765
Q ss_pred cchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467 113 QHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (312)
Q Consensus 113 ~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i 143 (312)
-. .......++++...++++..+.
T Consensus 65 vp-------~~~~~~~~~~l~~~l~~~~ii~ 88 (279)
T PRK07417 65 LP-------IGLLLPPSEQLIPALPPEAIVT 88 (279)
T ss_pred CC-------HHHHHHHHHHHHHhCCCCcEEE
Confidence 53 3336677888888888875554
No 378
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=69.91 E-value=32 Score=31.33 Aligned_cols=103 Identities=19% Similarity=0.159 Sum_probs=65.8
Q ss_pred CEEEEECCCC-CccHHHHHHc-C-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEE-cCCCCCchhhhhhhcCCceeE
Q 021467 33 VTVCDLYCGA-GVDVDKWETA-L-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFE-ADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 33 ~~VLDlGCG~-G~~l~~~~~~-~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~-~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.+|+=+|.|. |+.+...++. + ...++|.|.+...++.+.+.- +..-. .+.... .....|+
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg--------v~d~~~~~~~~~--------~~~~aD~ 67 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG--------VIDELTVAGLAE--------AAAEADL 67 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC--------cccccccchhhh--------hcccCCE
Confidence 4678888874 4444333333 3 235789999887776665432 11100 110000 2356899
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHHH
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQK 158 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~~ 158 (312)
|+..-.+.. ...+++++...|++|..+.-++.-...+.+.+++
T Consensus 68 VivavPi~~-------~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~ 110 (279)
T COG0287 68 VIVAVPIEA-------TEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEK 110 (279)
T ss_pred EEEeccHHH-------HHHHHHHhcccCCCCCEEEecccccHHHHHHHHH
Confidence 987665555 8899999999999999988777777777766654
No 379
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=69.79 E-value=42 Score=29.31 Aligned_cols=78 Identities=18% Similarity=0.078 Sum_probs=43.0
Q ss_pred CCEEEEECCCC-CccH-HHHHHcCCCeEEEEeCCh-------------------HHHHHHHHHHHhcCCCceEEEEEcCC
Q 021467 32 YVTVCDLYCGA-GVDV-DKWETALIANYIGIDVAT-------------------SGIGEARDTWENQRKNFIAEFFEADP 90 (312)
Q Consensus 32 ~~~VLDlGCG~-G~~l-~~~~~~~~~~v~giDis~-------------------~~i~~a~~r~~~~~~~~~~~f~~~D~ 90 (312)
..+|+=+|||. |..+ ..+...+..+++.+|.+. .-.+.+.++++..+...+++.+..++
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i 100 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERL 100 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEeccee
Confidence 57999999984 4433 344455888898886543 22344455555444334455554444
Q ss_pred CCCchhhhhhhcCCceeEEEecc
Q 021467 91 CAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
......+. -..+|+|++..
T Consensus 101 ~~~~~~~~----~~~~DvVi~~~ 119 (228)
T cd00757 101 DAENAEEL----IAGYDLVLDCT 119 (228)
T ss_pred CHHHHHHH----HhCCCEEEEcC
Confidence 32222111 24588887654
No 380
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=69.65 E-value=18 Score=31.67 Aligned_cols=71 Identities=17% Similarity=0.097 Sum_probs=47.1
Q ss_pred EEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHH-HHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 34 TVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARD-TWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 34 ~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~-r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
+++=+|||. |..+.+.+......|+.+|.+++.+++... .. ....+++|.++....... .-..+|++++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~~~L~~a--gi~~aD~vva 72 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTHVVIGDATDEDVLEEA--GIDDADAVVA 72 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCHHHHHhc--CCCcCCEEEE
Confidence 577789996 444445455555699999999988776333 22 167889999886543322 2367888775
Q ss_pred cc
Q 021467 112 FQ 113 (312)
Q Consensus 112 ~~ 113 (312)
.-
T Consensus 73 ~t 74 (225)
T COG0569 73 AT 74 (225)
T ss_pred ee
Confidence 43
No 381
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=69.53 E-value=14 Score=35.26 Aligned_cols=46 Identities=9% Similarity=-0.062 Sum_probs=35.3
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHH
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWE 75 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~ 75 (312)
+.++.+||-|++|.. .+..++.+++.+|++||+++..+...+-+..
T Consensus 33 i~~~d~vl~ItSaG~-N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 33 IGPDDRVLTITSAGC-NALDYLLAGPKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCCeEEEEccCCc-hHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence 347889999997755 5555566777899999999998877665543
No 382
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=69.28 E-value=39 Score=32.50 Aligned_cols=75 Identities=13% Similarity=0.023 Sum_probs=48.0
Q ss_pred CCCEEEEECCCCC-ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAG-VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G-~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
+..+|+=+|+|.= ..+...+......++.+|.+++.++.+++.... +.++.+|..+....... .-..+|.|
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~------~~~i~gd~~~~~~L~~~--~~~~a~~v 301 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPN------TLVLHGDGTDQELLEEE--GIDEADAF 301 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCC------CeEEECCCCCHHHHHhc--CCccCCEE
Confidence 4578999999763 233333334455899999999988877765421 56789998765432211 23578887
Q ss_pred Eecc
Q 021467 110 CCFQ 113 (312)
Q Consensus 110 ~~~~ 113 (312)
++..
T Consensus 302 i~~~ 305 (453)
T PRK09496 302 IALT 305 (453)
T ss_pred EECC
Confidence 6543
No 383
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=68.66 E-value=78 Score=27.64 Aligned_cols=76 Identities=11% Similarity=0.066 Sum_probs=47.5
Q ss_pred CEEEEECCCCCcc--HHHHHH---cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 33 VTVCDLYCGAGVD--VDKWET---ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 33 ~~VLDlGCG~G~~--l~~~~~---~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
..+++.+|+-|.. +..++. +-..++++|-..++.+...++.....+....++|+.+|..+.-+ + .-...|
T Consensus 43 kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~----~-~~~~iD 117 (218)
T PF07279_consen 43 KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVM----P-GLKGID 117 (218)
T ss_pred eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHH----h-hccCCC
Confidence 4688887664432 223322 24569999999999998888888766544457888887432111 1 124577
Q ss_pred EEEecc
Q 021467 108 LVCCFQ 113 (312)
Q Consensus 108 ~V~~~~ 113 (312)
.++.--
T Consensus 118 F~vVDc 123 (218)
T PF07279_consen 118 FVVVDC 123 (218)
T ss_pred EEEEeC
Confidence 665433
No 384
>PRK08265 short chain dehydrogenase; Provisional
Probab=67.38 E-value=65 Score=28.28 Aligned_cols=78 Identities=10% Similarity=-0.025 Sum_probs=46.0
Q ss_pred CCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCCc
Q 021467 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQ 105 (312)
Q Consensus 32 ~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~~ 105 (312)
+.++|=.|++.| ..+...+.....+|+.+|.+.+.++...+... .++.++.+|+.+..-.. ......+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 80 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARFGR 80 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 568888887554 22222222334589999998876655444331 23778899998753211 11112357
Q ss_pred eeEEEeccc
Q 021467 106 ADLVCCFQH 114 (312)
Q Consensus 106 fD~V~~~~~ 114 (312)
.|+++...+
T Consensus 81 id~lv~~ag 89 (261)
T PRK08265 81 VDILVNLAC 89 (261)
T ss_pred CCEEEECCC
Confidence 898877654
No 385
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.19 E-value=81 Score=27.06 Aligned_cols=80 Identities=13% Similarity=-0.074 Sum_probs=49.1
Q ss_pred CCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hhhcCCc
Q 021467 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKANQ 105 (312)
Q Consensus 32 ~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~----~~~~~~~ 105 (312)
+.+||=.|++.| ..+.+.+.....+|++++-++..++........ ..++.++.+|+.+..-... .....+.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 467888887543 333333333445899999998777666555443 1237889999887542211 1112357
Q ss_pred eeEEEeccc
Q 021467 106 ADLVCCFQH 114 (312)
Q Consensus 106 fD~V~~~~~ 114 (312)
+|+|+...+
T Consensus 82 ~d~vi~~ag 90 (251)
T PRK07231 82 VDILVNNAG 90 (251)
T ss_pred CCEEEECCC
Confidence 898887664
No 386
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=67.11 E-value=89 Score=29.55 Aligned_cols=79 Identities=14% Similarity=0.053 Sum_probs=45.6
Q ss_pred CCCEEEEECCCC-CccH-HHHHHcCCCeEEEEeCC-------------------hHHHHHHHHHHHhcCCCceEEEEEcC
Q 021467 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVA-------------------TSGIGEARDTWENQRKNFIAEFFEAD 89 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l-~~~~~~~~~~v~giDis-------------------~~~i~~a~~r~~~~~~~~~~~f~~~D 89 (312)
.+.+||=+|||. |..+ ..++..+..+++.+|-+ ..-.+.+.+++...+...++..+...
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 213 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER 213 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 467899999984 4433 34445688899999987 22344555666554433444444444
Q ss_pred CCCCchhhhhhhcCCceeEEEecc
Q 021467 90 PCAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
+........ -..+|+|+..-
T Consensus 214 ~~~~~~~~~----~~~~D~Vv~~~ 233 (376)
T PRK08762 214 VTSDNVEAL----LQDVDVVVDGA 233 (376)
T ss_pred CChHHHHHH----HhCCCEEEECC
Confidence 333222111 24689888543
No 387
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=66.96 E-value=27 Score=30.80 Aligned_cols=92 Identities=17% Similarity=0.096 Sum_probs=54.3
Q ss_pred CCCCEEEEECCCC-CccHHHHHHcCCCe-EEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 30 HPYVTVCDLYCGA-GVDVDKWETALIAN-YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~~~~~~~~~~-v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
.++.+||=.|||. |..+..+++....+ +++++.+++..+.+++.-... ..... .. .. . ....+|
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~------~~~~~--~~-~~---~--~~~~~d 161 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPAD------PVAAD--TA-DE---I--GGRGAD 161 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCc------ccccc--ch-hh---h--cCCCCC
Confidence 4678899888864 44455555554445 999999988877665432000 00000 00 00 0 235689
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+..-. ....+....+.|+++|.++..
T Consensus 162 ~vl~~~~----------~~~~~~~~~~~l~~~g~~~~~ 189 (277)
T cd08255 162 VVIEASG----------SPSALETALRLLRDRGRVVLV 189 (277)
T ss_pred EEEEccC----------ChHHHHHHHHHhcCCcEEEEE
Confidence 8875321 012466677889999999865
No 388
>PRK12939 short chain dehydrogenase; Provisional
Probab=66.93 E-value=64 Score=27.73 Aligned_cols=82 Identities=11% Similarity=-0.147 Sum_probs=47.5
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hhhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~----~~~~~~ 104 (312)
++.+||=.|++.| ..+.+.+.....++++++-+++.++...+..+..+ .++.++.+|+.+..-... ....-+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3567887776443 22222222344589999998887776655554322 247888999987432111 111125
Q ss_pred ceeEEEeccc
Q 021467 105 QADLVCCFQH 114 (312)
Q Consensus 105 ~fD~V~~~~~ 114 (312)
+.|+|+....
T Consensus 84 ~id~vi~~ag 93 (250)
T PRK12939 84 GLDGLVNNAG 93 (250)
T ss_pred CCCEEEECCC
Confidence 7898876554
No 389
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=66.85 E-value=60 Score=29.30 Aligned_cols=114 Identities=16% Similarity=0.107 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHhcC-------CCCEEEEECCCCC-------ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCC
Q 021467 15 RLYEFAKTALIKIYSH-------PYVTVCDLYCGAG-------VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKN 80 (312)
Q Consensus 15 ~~~n~vk~~li~~~~~-------~~~~VLDlGCG~G-------~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~ 80 (312)
-+-|.+|..-+-.|+. .+++||-+|.|+- ..+..|+..+ +-++-.|+.+- ..+.
T Consensus 38 ~~~NV~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~-ailvDnDi~d~--------vSDa--- 105 (299)
T PF06460_consen 38 IMMNVAKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPED-AILVDNDIRDY--------VSDA--- 105 (299)
T ss_dssp --HHHHHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT--EEEEEESS----------B-SS---
T ss_pred ceeeHHHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCC-cEEEecchhhh--------cccc---
Confidence 3457777665555543 5789999999853 1344554333 36777777531 1111
Q ss_pred ceEEEEEcCCCCCchhhhhhhcCCceeEEEeccc---hhhhc----CCHHHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 81 FIAEFFEADPCAENFETQMQEKANQADLVCCFQH---LQMCF----ETEERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 81 ~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~---lh~~~----~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
-..+.+|+.... .+.++|+|++-.- .+.+- ..+.-..-+..-+...|+-||.+.+-+-..
T Consensus 106 --~~~~~~Dc~t~~-------~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~ 172 (299)
T PF06460_consen 106 --DQSIVGDCRTYM-------PPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEH 172 (299)
T ss_dssp --SEEEES-GGGEE-------ESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SS
T ss_pred --CCceeccccccC-------CCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecc
Confidence 235677876644 3689999988542 11110 111222344556678899999998875544
No 390
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=66.38 E-value=46 Score=30.10 Aligned_cols=97 Identities=12% Similarity=-0.002 Sum_probs=58.0
Q ss_pred cCCCCEEEEECC--CCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh-hcCCc
Q 021467 29 SHPYVTVCDLYC--GAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQ 105 (312)
Q Consensus 29 ~~~~~~VLDlGC--G~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~-~~~~~ 105 (312)
..++.+||=.|. |-|..+..+++....++++++.+++-.+.+++ +.. -.++ |....++...+. ...+.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~Ga------~~vi--~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-LGF------DAVF--NYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cCC------CEEE--eCCCccHHHHHHHHCCCC
Confidence 347889988884 34445566666655689999999887777755 211 1112 222222222221 11256
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+|+-... ...+....++|+++|+++..
T Consensus 212 vd~vld~~g-----------~~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 212 IDCYFDNVG-----------GEFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred cEEEEECCC-----------HHHHHHHHHhhccCCEEEEE
Confidence 898875431 12467778899999999865
No 391
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=65.90 E-value=67 Score=30.04 Aligned_cols=79 Identities=19% Similarity=0.115 Sum_probs=48.7
Q ss_pred CCCEEEEECCCC-Ccc-HHHHHHcCCCeEEEEeCCh---------------------HHHHHHHHHHHhcCCCceEEEEE
Q 021467 31 PYVTVCDLYCGA-GVD-VDKWETALIANYIGIDVAT---------------------SGIGEARDTWENQRKNFIAEFFE 87 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~-l~~~~~~~~~~v~giDis~---------------------~~i~~a~~r~~~~~~~~~~~f~~ 87 (312)
...+||=+|||. |.. +..++..+..+++.+|-+. .-.+.|+++++..+...+++.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 357899999984 433 3444556888999999863 11234455555544455567777
Q ss_pred cCCCCCchhhhhhhcCCceeEEEecc
Q 021467 88 ADPCAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 88 ~D~~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
.++........ -..+|+|+...
T Consensus 103 ~~~~~~~~~~~----~~~~DlVid~~ 124 (339)
T PRK07688 103 QDVTAEELEEL----VTGVDLIIDAT 124 (339)
T ss_pred ccCCHHHHHHH----HcCCCEEEEcC
Confidence 67654333221 25689988653
No 392
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=65.78 E-value=46 Score=30.39 Aligned_cols=105 Identities=16% Similarity=0.018 Sum_probs=72.2
Q ss_pred CCEEEEECCCCCccHHHHHH---cCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 32 YVTVCDLYCGAGVDVDKWET---ALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~~~~~---~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
+..|+=+|= .|+..++. .-+.++..+||++..|.--.+-.++.+. .+++.+..|+.+. +.+. -.++||+
T Consensus 153 gK~I~vvGD---DDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~p-lpe~---~~~kFDv 224 (354)
T COG1568 153 GKEIFVVGD---DDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNP-LPED---LKRKFDV 224 (354)
T ss_pred CCeEEEEcC---chhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhccc-ChHH---HHhhCCe
Confidence 456888882 24443333 2467899999999999888777766542 1267778888763 3222 2478999
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCC---cEEEEEecCh
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPG---GYFLGITPDS 149 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG---G~~i~~~p~~ 149 (312)
.+.--. ++...++.++..=-..||.- |+|-++.-.+
T Consensus 225 fiTDPp-----eTi~alk~FlgRGI~tLkg~~~aGyfgiT~res 263 (354)
T COG1568 225 FITDPP-----ETIKALKLFLGRGIATLKGEGCAGYFGITRRES 263 (354)
T ss_pred eecCch-----hhHHHHHHHHhccHHHhcCCCccceEeeeeccc
Confidence 876542 55667888888877888876 8998886665
No 393
>PRK05854 short chain dehydrogenase; Provisional
Probab=65.69 E-value=51 Score=30.09 Aligned_cols=84 Identities=8% Similarity=-0.108 Sum_probs=51.4
Q ss_pred CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh----hhhhhcC
Q 021467 31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKA 103 (312)
Q Consensus 31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~----~~~~~~~ 103 (312)
.+.++|=.|++.|- .+..+++ ...+|+.++-+.+..+.+.+.+.......++.++.+|+.+..-. ..+....
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~-~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAA-AGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 35688888877662 2223333 34589999998887777666554322223478899999774321 1122234
Q ss_pred CceeEEEeccch
Q 021467 104 NQADLVCCFQHL 115 (312)
Q Consensus 104 ~~fD~V~~~~~l 115 (312)
+..|+++.+.+.
T Consensus 92 ~~iD~li~nAG~ 103 (313)
T PRK05854 92 RPIHLLINNAGV 103 (313)
T ss_pred CCccEEEECCcc
Confidence 678998877653
No 394
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=65.60 E-value=42 Score=30.66 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=58.2
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCCc
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQ 105 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~~ 105 (312)
+.++.+||-.|+|. |..+..+++....+++++..+++..+.+++.. . .+.+ |.....+...+. .....
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g-~------~~v~--~~~~~~~~~~l~~~~~~~~ 227 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELG-A------DDTI--NVGDEDVAARLRELTDGEG 227 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhC-C------CEEe--cCcccCHHHHHHHHhCCCC
Confidence 34788999998763 44555666665568999988888777664432 1 1111 222222222221 12346
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+++.... . ...+..+.+.|+++|.++..
T Consensus 228 vd~vld~~g------~----~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 228 ADVVIDATG------N----PASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred CCEEEECCC------C----HHHHHHHHHHHhcCCEEEEE
Confidence 899875431 0 23467778899999999865
No 395
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=65.43 E-value=37 Score=30.30 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=49.9
Q ss_pred CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHH
Q 021467 54 IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVS 133 (312)
Q Consensus 54 ~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~ 133 (312)
..+|+|+|.++..++.|.+.--. |....+. + .-..+|+|+..-. ......+++++.
T Consensus 11 ~~~v~g~d~~~~~~~~a~~~g~~------------~~~~~~~-~----~~~~~DlvvlavP-------~~~~~~~l~~~~ 66 (258)
T PF02153_consen 11 DVEVYGYDRDPETLEAALELGII------------DEASTDI-E----AVEDADLVVLAVP-------VSAIEDVLEEIA 66 (258)
T ss_dssp TSEEEEE-SSHHHHHHHHHTTSS------------SEEESHH-H----HGGCCSEEEE-S--------HHHHHHHHHHHH
T ss_pred CeEEEEEeCCHHHHHHHHHCCCe------------eeccCCH-h----HhcCCCEEEEcCC-------HHHHHHHHHHhh
Confidence 46999999999998887654211 1001111 1 1145799885554 444889999999
Q ss_pred hccCCCcEEEEEecChhHHHHHHHH
Q 021467 134 SLLKPGGYFLGITPDSSTIWAKYQK 158 (312)
Q Consensus 134 ~~LkpGG~~i~~~p~~~~l~~~~~~ 158 (312)
..+++|+.+.=+..-...+.+.+.+
T Consensus 67 ~~~~~~~iv~Dv~SvK~~~~~~~~~ 91 (258)
T PF02153_consen 67 PYLKPGAIVTDVGSVKAPIVEAMER 91 (258)
T ss_dssp CGS-TTSEEEE--S-CHHHHHHHHH
T ss_pred hhcCCCcEEEEeCCCCHHHHHHHHH
Confidence 9999998888777766777766654
No 396
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=65.40 E-value=52 Score=31.65 Aligned_cols=97 Identities=10% Similarity=0.087 Sum_probs=53.7
Q ss_pred EEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEec
Q 021467 34 TVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCCF 112 (312)
Q Consensus 34 ~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~ 112 (312)
+|+=+|||. |..+...+......|+++|.+++.++.+++.. + +..+.+|..+....... .-..+|.|++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~---~----~~~~~gd~~~~~~l~~~--~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL---D----VRTVVGNGSSPDVLREA--GAEDADLLIAV 72 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc---C----EEEEEeCCCCHHHHHHc--CCCcCCEEEEe
Confidence 577778864 32333333334458999999998877665421 2 67788998764332211 13568877654
Q ss_pred cchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 113 QHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 113 ~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
.. .+.....+....+.+.|.-..+..+
T Consensus 73 ~~-------~~~~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 73 TD-------SDETNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred cC-------ChHHHHHHHHHHHHhcCCCeEEEEE
Confidence 31 1122333444455554554555544
No 397
>PRK07063 short chain dehydrogenase; Provisional
Probab=65.21 E-value=60 Score=28.30 Aligned_cols=84 Identities=10% Similarity=-0.107 Sum_probs=52.0
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~ 104 (312)
.+.+||=.|++.| ..+.+.+.....+|+.+|.+++.++...+.........++.++.+|+.+..-.. ......+
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 85 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG 85 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 3568999998665 222222223445899999998888877776654212234788899998753211 1111236
Q ss_pred ceeEEEeccc
Q 021467 105 QADLVCCFQH 114 (312)
Q Consensus 105 ~fD~V~~~~~ 114 (312)
..|+++...+
T Consensus 86 ~id~li~~ag 95 (260)
T PRK07063 86 PLDVLVNNAG 95 (260)
T ss_pred CCcEEEECCC
Confidence 7898877654
No 398
>PRK05875 short chain dehydrogenase; Provisional
Probab=65.21 E-value=97 Score=27.24 Aligned_cols=84 Identities=14% Similarity=-0.017 Sum_probs=48.3
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh-h---hhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-M---QEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~-~---~~~~~ 104 (312)
++.++|=.|++.| ..+.+.+.....+|++++-+++.++...+.........++.++.+|+.+..-... + ....+
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG 85 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3578998987543 3333333334458999998877666554444322111247788899977542111 1 11134
Q ss_pred ceeEEEeccc
Q 021467 105 QADLVCCFQH 114 (312)
Q Consensus 105 ~fD~V~~~~~ 114 (312)
..|+++...+
T Consensus 86 ~~d~li~~ag 95 (276)
T PRK05875 86 RLHGVVHCAG 95 (276)
T ss_pred CCCEEEECCC
Confidence 6898877554
No 399
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=64.98 E-value=69 Score=30.15 Aligned_cols=79 Identities=15% Similarity=-0.012 Sum_probs=48.4
Q ss_pred CCCEEEEECCCC-CccH-HHHHHcCCCeEEEEeCCh-------------------HHHHHHHHHHHhcCCCceEEEEEcC
Q 021467 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVAT-------------------SGIGEARDTWENQRKNFIAEFFEAD 89 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l-~~~~~~~~~~v~giDis~-------------------~~i~~a~~r~~~~~~~~~~~f~~~D 89 (312)
...+||=+|||. |..+ ..++..+..+++.+|.+. .-.+.|.+++...+...+++.+...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 457999999985 4333 344455888999998764 2234556666665545556666555
Q ss_pred CCCCchhhhhhhcCCceeEEEecc
Q 021467 90 PCAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
+......+. -..+|+|+...
T Consensus 107 i~~~~~~~~----~~~~DvVvd~~ 126 (355)
T PRK05597 107 LTWSNALDE----LRDADVILDGS 126 (355)
T ss_pred cCHHHHHHH----HhCCCEEEECC
Confidence 543322111 25699988654
No 400
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=64.53 E-value=54 Score=29.22 Aligned_cols=93 Identities=9% Similarity=0.063 Sum_probs=49.9
Q ss_pred CeEEEEeCChHHHHHHHHHHHhcCCCc-eEEEEEcCCCCCchhhhhhhcCCceeEEEeccch---------hhhcCCHHH
Q 021467 55 ANYIGIDVATSGIGEARDTWENQRKNF-IAEFFEADPCAENFETQMQEKANQADLVCCFQHL---------QMCFETEER 124 (312)
Q Consensus 55 ~~v~giDis~~~i~~a~~r~~~~~~~~-~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l---------h~~~~~~~~ 124 (312)
.+++-+|++++.++......+...... ...+...+ +... .-...|+|++.... ..+..+.+-
T Consensus 27 ~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~----d~~~----~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i 98 (263)
T cd00650 27 IELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITD----DPYE----AFKDADVVIITAGVGRKPGMGRLDLLKRNVPI 98 (263)
T ss_pred eEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECC----chHH----HhCCCCEEEECCCCCCCcCCCHHHHHHHHHHH
Confidence 589999999877766555443321110 11222111 1111 12458888884421 122344555
Q ss_pred HHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467 125 ARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (312)
Q Consensus 125 ~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~ 156 (312)
.+...+.+.+.- |.|+++..+-..+.+-.-+
T Consensus 99 ~~~i~~~i~~~~-p~a~~i~~tNP~d~~t~~~ 129 (263)
T cd00650 99 VKEIGDNIEKYS-PDAWIIVVSNPVDIITYLV 129 (263)
T ss_pred HHHHHHHHHHHC-CCeEEEEecCcHHHHHHHH
Confidence 667777777765 8998887754444443333
No 401
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.52 E-value=7.8 Score=35.27 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=59.2
Q ss_pred CEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-------CCC---------ceEEEEEcCCCCCch
Q 021467 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKN---------FIAEFFEADPCAENF 95 (312)
Q Consensus 33 ~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~-------~~~---------~~~~f~~~D~~~~~~ 95 (312)
.+|-=||+|. |..+..++......|+..|.+++.++.+.+++... +.. .++. ...| +
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~-----~ 79 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTD-----L 79 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCC-----H
Confidence 3688889985 33333333334459999999999999988775432 100 0000 0111 1
Q ss_pred hhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhcc-CCCcEEEEE
Q 021467 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLL-KPGGYFLGI 145 (312)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~L-kpGG~~i~~ 145 (312)
. .-...|+|+-. ..++.+-...++..+.+.+ +||.++.-.
T Consensus 80 ----~-~~~~~d~ViEa-----v~E~~~~K~~l~~~l~~~~~~~~~il~sn 120 (286)
T PRK07819 80 ----G-DFADRQLVIEA-----VVEDEAVKTEIFAELDKVVTDPDAVLASN 120 (286)
T ss_pred ----H-HhCCCCEEEEe-----cccCHHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 0 12456877644 3577888888999999998 677665543
No 402
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=64.44 E-value=45 Score=30.55 Aligned_cols=74 Identities=14% Similarity=0.025 Sum_probs=43.3
Q ss_pred EEEEECCC-CCccHHHHH-HcCCCeEEEEeCChHHH-------------------HHHHHHHHhcCCCceEEEEEcCCCC
Q 021467 34 TVCDLYCG-AGVDVDKWE-TALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEADPCA 92 (312)
Q Consensus 34 ~VLDlGCG-~G~~l~~~~-~~~~~~v~giDis~~~i-------------------~~a~~r~~~~~~~~~~~f~~~D~~~ 92 (312)
+||=+||| .|..+.+.+ ..+..+++-+|.+...+ +.|.+++...+...++..+..++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 47889998 454444444 45888999998643322 2334444444444556666666654
Q ss_pred CchhhhhhhcCCceeEEEec
Q 021467 93 ENFETQMQEKANQADLVCCF 112 (312)
Q Consensus 93 ~~~~~~~~~~~~~fD~V~~~ 112 (312)
.+. + --..||+|++.
T Consensus 81 ~~~-~----f~~~fdvVi~a 95 (291)
T cd01488 81 KDE-E----FYRQFNIIICG 95 (291)
T ss_pred hhH-H----HhcCCCEEEEC
Confidence 221 1 12579999864
No 403
>PRK06701 short chain dehydrogenase; Provisional
Probab=64.32 E-value=1.1e+02 Score=27.59 Aligned_cols=112 Identities=13% Similarity=0.043 Sum_probs=59.1
Q ss_pred CCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChH-HHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hhhcCC
Q 021467 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATS-GIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKAN 104 (312)
Q Consensus 32 ~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~-~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~----~~~~~~ 104 (312)
+.+||=.|++.| ..+...+.....+|+.++.+.. .++......+.. ..++.++.+|+.+...... ....-+
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 568999997665 2222222224458889888753 333333333322 2347788999987442111 111225
Q ss_pred ceeEEEeccchhh---hc--CCH-----------HHHHHHHHHHHhccCCCcEEEEE
Q 021467 105 QADLVCCFQHLQM---CF--ETE-----------ERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 105 ~fD~V~~~~~lh~---~~--~~~-----------~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
..|+|+....... .+ .+. .....+++.+.+.++++|.++.+
T Consensus 124 ~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~i 180 (290)
T PRK06701 124 RLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINT 180 (290)
T ss_pred CCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEE
Confidence 6898876543211 01 111 12344455566666777877765
No 404
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=64.29 E-value=40 Score=32.21 Aligned_cols=73 Identities=11% Similarity=-0.012 Sum_probs=48.3
Q ss_pred CEEEEECCCCCc--cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh-hhhhhcCCceeEE
Q 021467 33 VTVCDLYCGAGV--DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-TQMQEKANQADLV 109 (312)
Q Consensus 33 ~~VLDlGCG~G~--~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~-~~~~~~~~~fD~V 109 (312)
.+||=||||.=+ .+.++++.+..+|+..|-|.+..+.+...... +++..+.|+.+.+-. ..+ ..+|+|
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li----~~~d~V 72 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALI----KDFDLV 72 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHH----hcCCEE
Confidence 578999997532 22344445557999999998887777665432 378889999876322 222 345887
Q ss_pred Eeccc
Q 021467 110 CCFQH 114 (312)
Q Consensus 110 ~~~~~ 114 (312)
+....
T Consensus 73 In~~p 77 (389)
T COG1748 73 INAAP 77 (389)
T ss_pred EEeCC
Confidence 76544
No 405
>PRK07576 short chain dehydrogenase; Provisional
Probab=64.26 E-value=84 Score=27.62 Aligned_cols=81 Identities=10% Similarity=-0.077 Sum_probs=47.0
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh-h---hhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-M---QEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~-~---~~~~~ 104 (312)
++.++|=.|.+.| ..+.+.+.....+|+++|.+++.++...+.....+ .++.++.+|+.+..-... + ....+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4568888886443 22222233345589999999887766554443322 236778899876432111 1 11235
Q ss_pred ceeEEEecc
Q 021467 105 QADLVCCFQ 113 (312)
Q Consensus 105 ~fD~V~~~~ 113 (312)
..|++++..
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 689987654
No 406
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=63.83 E-value=14 Score=33.85 Aligned_cols=36 Identities=33% Similarity=0.430 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEecCh--hHHHHHHH
Q 021467 122 EERARRLLQNVSSLLKPGGYFLGITPDS--STIWAKYQ 157 (312)
Q Consensus 122 ~~~~~~~l~~i~~~LkpGG~~i~~~p~~--~~l~~~~~ 157 (312)
.+.++.+|..+..+|+|||++++++-.+ +.++++..
T Consensus 212 l~~L~~~L~~~~~~L~~gGrl~visfHSlEDriVK~~f 249 (296)
T PRK00050 212 LEELERALEAALDLLKPGGRLAVISFHSLEDRIVKRFF 249 (296)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHH
Confidence 4678999999999999999999887666 56666643
No 407
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=63.74 E-value=74 Score=29.73 Aligned_cols=79 Identities=16% Similarity=0.044 Sum_probs=49.7
Q ss_pred CCCEEEEECCCC-CccH-HHHHHcCCCeEEEEeCChH---------------------HHHHHHHHHHhcCCCceEEEEE
Q 021467 31 PYVTVCDLYCGA-GVDV-DKWETALIANYIGIDVATS---------------------GIGEARDTWENQRKNFIAEFFE 87 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l-~~~~~~~~~~v~giDis~~---------------------~i~~a~~r~~~~~~~~~~~f~~ 87 (312)
.+.+||=+|||. |..+ ..++..+..+++.+|-+.. =.+.|++++...+...+++.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 457899999994 4333 4445568889999998741 1244556666555555677777
Q ss_pred cCCCCCchhhhhhhcCCceeEEEecc
Q 021467 88 ADPCAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 88 ~D~~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
.|+....+... -..+|+|+...
T Consensus 103 ~~~~~~~~~~~----~~~~DlVid~~ 124 (338)
T PRK12475 103 TDVTVEELEEL----VKEVDLIIDAT 124 (338)
T ss_pred ccCCHHHHHHH----hcCCCEEEEcC
Confidence 77654333221 25689887654
No 408
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=63.55 E-value=70 Score=29.64 Aligned_cols=98 Identities=18% Similarity=0.158 Sum_probs=59.8
Q ss_pred cCCCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467 29 SHPYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~ 104 (312)
++++.+||=.|...| ..+..++++....++++--|++-.+.+++.-...- +. -.+.++.+.+.. ...
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~v----i~-----y~~~~~~~~v~~~t~g~ 210 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHV----IN-----YREEDFVEQVRELTGGK 210 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEE----Ec-----CCcccHHHHHHHHcCCC
Confidence 347899999996544 46667776644478888888776664444432211 22 222223333221 124
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
.+|+|+..-.-.+ +.+..+.|+++|.++...
T Consensus 211 gvDvv~D~vG~~~-----------~~~~l~~l~~~G~lv~ig 241 (326)
T COG0604 211 GVDVVLDTVGGDT-----------FAASLAALAPGGRLVSIG 241 (326)
T ss_pred CceEEEECCCHHH-----------HHHHHHHhccCCEEEEEe
Confidence 6999987664333 556778999999998763
No 409
>PRK08223 hypothetical protein; Validated
Probab=63.37 E-value=31 Score=31.55 Aligned_cols=77 Identities=12% Similarity=0.014 Sum_probs=47.4
Q ss_pred CCCEEEEECCCC-Ccc-HHHHHHcCCCeEEEEeCChHHH-------------------HHHHHHHHhcCCCceEEEEEcC
Q 021467 31 PYVTVCDLYCGA-GVD-VDKWETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEAD 89 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~-l~~~~~~~~~~v~giDis~~~i-------------------~~a~~r~~~~~~~~~~~f~~~D 89 (312)
...+||=+|||- |.. +..++..+..+++.+|-+...+ +.|+++....+...+++.+...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 468999999984 543 4455566888999998654333 3344555554444556666655
Q ss_pred CCCCchhhhhhhcCCceeEEEe
Q 021467 90 PCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
+...+..+.+ ..+|+|+.
T Consensus 106 l~~~n~~~ll----~~~DlVvD 123 (287)
T PRK08223 106 IGKENADAFL----DGVDVYVD 123 (287)
T ss_pred cCccCHHHHH----hCCCEEEE
Confidence 5554432222 46899874
No 410
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=63.17 E-value=50 Score=30.24 Aligned_cols=98 Identities=11% Similarity=-0.010 Sum_probs=53.0
Q ss_pred CEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHH--HHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDT--WENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 33 ~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r--~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
++|+=+|||. |+.+...+......|+.++-+.+.++..++. +.-....... ......... ...+.||+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~-~~~~~~~~~-------~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQAS-LYAIPAETA-------DAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcce-eeccCCCCc-------ccccccCEE
Confidence 5789999985 5444444344345899999987666544432 1000000000 000001000 123579988
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+..-=- .+....++.+...+.++..++..
T Consensus 75 iv~vK~-------~~~~~al~~l~~~l~~~t~vv~l 103 (305)
T PRK05708 75 LLACKA-------YDAEPAVASLAHRLAPGAELLLL 103 (305)
T ss_pred EEECCH-------HhHHHHHHHHHhhCCCCCEEEEE
Confidence 654321 22667888999999998866544
No 411
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=63.15 E-value=13 Score=29.88 Aligned_cols=37 Identities=8% Similarity=0.036 Sum_probs=24.3
Q ss_pred EECCCCC--ccHHHHH--Hc-CCCeEEEEeCChHHHHHHHHH
Q 021467 37 DLYCGAG--VDVDKWE--TA-LIANYIGIDVATSGIGEARDT 73 (312)
Q Consensus 37 DlGCG~G--~~l~~~~--~~-~~~~v~giDis~~~i~~a~~r 73 (312)
|+|+..| .....+. .. ...+++++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6555543 22 456899999999999988888
No 412
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=62.74 E-value=20 Score=29.25 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=55.7
Q ss_pred EEEEECCCCCccHHHHH-HcCCCeEEEEeCChHHHHHHHHHHHhcCC----C--ceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 34 TVCDLYCGAGVDVDKWE-TALIANYIGIDVATSGIGEARDTWENQRK----N--FIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 34 ~VLDlGCG~G~~l~~~~-~~~~~~v~giDis~~~i~~a~~r~~~~~~----~--~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
+|.=+|+|.++.+.... .....+|+....+++.++..++.-..... . .++.+ .. ++...+ ...
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~-----dl~~a~----~~a 70 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TT-----DLEEAL----EDA 70 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ES-----SHHHHH----TT-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-cc-----CHHHHh----Ccc
Confidence 36668999887655433 33456999999999888776654332110 0 01111 11 221111 456
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|+|+..-.-+. .+.+++.+...|+++-.++..
T Consensus 71 d~IiiavPs~~-------~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 71 DIIIIAVPSQA-------HREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp SEEEE-S-GGG-------HHHHHHHHTTTSHTT-EEEET
T ss_pred cEEEecccHHH-------HHHHHHHHhhccCCCCEEEEe
Confidence 88876554444 688999999999887777655
No 413
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=62.23 E-value=40 Score=31.49 Aligned_cols=95 Identities=19% Similarity=0.116 Sum_probs=52.0
Q ss_pred CCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.++.+||=.|+|. |..+..+++....+++++|.+++....+.+.+ + +.... +..+.. .+....+.+|+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~---G----a~~vi-~~~~~~---~~~~~~~~~D~ 250 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL---G----ADSFL-VSTDPE---KMKAAIGTMDY 250 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC---C----CcEEE-cCCCHH---HHHhhcCCCCE
Confidence 4678898899864 33444555555557889988876543332222 2 11111 111110 11111135888
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|+-... ....+....++|++||.++..
T Consensus 251 vid~~g----------~~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 251 IIDTVS----------AVHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred EEECCC----------CHHHHHHHHHHhcCCcEEEEe
Confidence 875432 112466677899999999865
No 414
>PLN02827 Alcohol dehydrogenase-like
Probab=61.93 E-value=55 Score=30.83 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=53.9
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--Cchhhhhhh-cC
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQE-KA 103 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~--~~~~~~~~~-~~ 103 (312)
..++.+||=.|+|. |..+..+++. +...++++|.+++-.+.|++. +. -.++ |..+ .+....+.. ..
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga---~~~i--~~~~~~~~~~~~v~~~~~ 261 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GV---TDFI--NPNDLSEPIQQVIKRMTG 261 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CC---cEEE--cccccchHHHHHHHHHhC
Confidence 34788999998754 2233344444 444699999998877766442 21 1111 2211 122111111 12
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 021467 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (312)
Q Consensus 104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG-G~~i~~ 145 (312)
+.+|+|+-.-.- ...+....+.|++| |+++..
T Consensus 262 ~g~d~vid~~G~----------~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 262 GGADYSFECVGD----------TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred CCCCEEEECCCC----------hHHHHHHHHhhccCCCEEEEE
Confidence 368988754321 12355566788998 999754
No 415
>PRK07062 short chain dehydrogenase; Provisional
Probab=61.76 E-value=70 Score=27.97 Aligned_cols=85 Identities=7% Similarity=-0.121 Sum_probs=51.8
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~ 104 (312)
.+.++|=.|++.| ..+.+.+.....+|+.++.+++.++.+.+.........++.++.+|+.+..-.. ......+
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 86 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 3578999998766 222222223445899999998888776665544321234778889988753211 1111236
Q ss_pred ceeEEEeccch
Q 021467 105 QADLVCCFQHL 115 (312)
Q Consensus 105 ~fD~V~~~~~l 115 (312)
..|+++...+.
T Consensus 87 ~id~li~~Ag~ 97 (265)
T PRK07062 87 GVDMLVNNAGQ 97 (265)
T ss_pred CCCEEEECCCC
Confidence 78988776543
No 416
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=61.38 E-value=80 Score=27.97 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=43.6
Q ss_pred CCCEEEEECCCC-CccHH-HHHHcCCCeEEEEeCChHHH-------------------HHHHHHHHhcCCCceEEEEEcC
Q 021467 31 PYVTVCDLYCGA-GVDVD-KWETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEAD 89 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~-~~~~~~~~~v~giDis~~~i-------------------~~a~~r~~~~~~~~~~~f~~~D 89 (312)
...+||=+|||. |..+. .++..+..+++-+|.+.... +.|++++...+...+++.+...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~ 110 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINAR 110 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEecc
Confidence 457999999983 44333 44455888899888653322 3334455444433445555544
Q ss_pred CCCCchhhhhhhcCCceeEEEecc
Q 021467 90 PCAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
+....... --..||+|+...
T Consensus 111 i~~~~~~~----~~~~~DiVi~~~ 130 (245)
T PRK05690 111 LDDDELAA----LIAGHDLVLDCT 130 (245)
T ss_pred CCHHHHHH----HHhcCCEEEecC
Confidence 43322211 124688887554
No 417
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=61.34 E-value=37 Score=30.80 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=57.0
Q ss_pred CEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHh-------cCCC--------ceEEEEEcCCCCCchh
Q 021467 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWEN-------QRKN--------FIAEFFEADPCAENFE 96 (312)
Q Consensus 33 ~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~-------~~~~--------~~~~f~~~D~~~~~~~ 96 (312)
.+|.=||+|. |..+...+.....+|+++|.+++.++.++++... .+.. ........| ..
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~ 79 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTN-----LE 79 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCC-----HH
Confidence 4677889985 4333333333345999999999999877665432 1100 000001111 10
Q ss_pred hhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (312)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i 143 (312)
.-...|+|+..- .++.+....+++++...++|+.+++
T Consensus 80 -----~~~~aD~Vieav-----~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 80 -----ELRDADFIIEAI-----VESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred -----HhCCCCEEEEcC-----ccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 124568877543 3556667888999999999987665
No 418
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.47 E-value=89 Score=28.21 Aligned_cols=95 Identities=18% Similarity=0.115 Sum_probs=55.5
Q ss_pred CEEEEECCCCCc-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-------CCC---------ceEEEEEcCCCCCch
Q 021467 33 VTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKN---------FIAEFFEADPCAENF 95 (312)
Q Consensus 33 ~~VLDlGCG~G~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~-------~~~---------~~~~f~~~D~~~~~~ 95 (312)
.+|.=||+|.-| .+...+.....+|+.+|.+++.++.+.++...+ +.. .++.+ ..|.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~----- 78 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDL----- 78 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCH-----
Confidence 467888998533 232333333458999999999998876543321 100 00111 1111
Q ss_pred hhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (312)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i 143 (312)
. .-...|+|+..- .++.+..+.+++.+...++|+.+++
T Consensus 79 ~-----~~~~aD~Vieav-----pe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 79 E-----DLADCDLVIEAA-----TEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred H-----HhcCCCEEEEcC-----cCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 0 124578877543 2344456778889999999988766
No 419
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.36 E-value=45 Score=30.15 Aligned_cols=97 Identities=13% Similarity=0.083 Sum_probs=54.7
Q ss_pred EEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-------CCCc---------eEEEEEcCCCCCchh
Q 021467 34 TVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKNF---------IAEFFEADPCAENFE 96 (312)
Q Consensus 34 ~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~-------~~~~---------~~~f~~~D~~~~~~~ 96 (312)
+|.=||+|. |..+...+.....+|+.+|.+++.++.+.++.... +.-. .+. ...| +.
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~-~~~~-----~~ 76 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS-YSLD-----LK 76 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE-EeCc-----HH
Confidence 577789884 32333333333448999999999999887654221 0000 011 1111 10
Q ss_pred hhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 97 TQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 97 ~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+ .-...|+|+..-. ++.+....++..+.+.++|+.++...
T Consensus 77 ~----~~~~aD~Vi~avp-----e~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 77 A----AVADADLVIEAVP-----EKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred H----hhcCCCEEEEecc-----CCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 0 1245788774431 34444567788899999998766443
No 420
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.13 E-value=41 Score=29.00 Aligned_cols=82 Identities=13% Similarity=-0.024 Sum_probs=49.2
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~ 104 (312)
++.++|=.|++.| ..+.+.+.....+++++|.++..++.+.+.....+ .++.++++|+.+..... ......+
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDFG 81 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3568998997544 23333333344589999999877776666554322 24778899987643211 1111125
Q ss_pred ceeEEEeccc
Q 021467 105 QADLVCCFQH 114 (312)
Q Consensus 105 ~fD~V~~~~~ 114 (312)
..|.|+...+
T Consensus 82 ~id~vi~~ag 91 (253)
T PRK08217 82 QLNGLINNAG 91 (253)
T ss_pred CCCEEEECCC
Confidence 6898887654
No 421
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.02 E-value=1.2e+02 Score=26.55 Aligned_cols=111 Identities=10% Similarity=-0.040 Sum_probs=58.2
Q ss_pred CCCEEEEECCCC--C--c-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh----hhhhh
Q 021467 31 PYVTVCDLYCGA--G--V-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQE 101 (312)
Q Consensus 31 ~~~~VLDlGCG~--G--~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~----~~~~~ 101 (312)
.+..+|=.|+++ | . .+..+++.+ .+|+.+|.+....+.+.+..+..+ .+.++.+|+.+..-. +....
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G-~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALG-AELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcC-CEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHH
Confidence 457889999764 3 2 223333334 588888888654332322222211 145678898774321 11222
Q ss_pred cCCceeEEEeccchhhh------c--CCHHHHHHH-----------HHHHHhccCCCcEEEEE
Q 021467 102 KANQADLVCCFQHLQMC------F--ETEERARRL-----------LQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 102 ~~~~fD~V~~~~~lh~~------~--~~~~~~~~~-----------l~~i~~~LkpGG~~i~~ 145 (312)
..+..|+++.+..+... + .+.++.+.. .+.+...++.+|.++.+
T Consensus 85 ~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 85 EWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred HcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 23678998877654210 0 123333333 34555666667877654
No 422
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=59.15 E-value=38 Score=27.13 Aligned_cols=80 Identities=13% Similarity=0.032 Sum_probs=50.8
Q ss_pred EEEEECCCCCc---cHHHHHHcCCCeEEEEeCC--hHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh----hhhhhcCC
Q 021467 34 TVCDLYCGAGV---DVDKWETALIANYIGIDVA--TSGIGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEKAN 104 (312)
Q Consensus 34 ~VLDlGCG~G~---~l~~~~~~~~~~v~giDis--~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~----~~~~~~~~ 104 (312)
+||=.|++.|- .+..++..+...++.+.-+ .+.++.....++..+ .++.++++|+.+..-. ..+....+
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 56778877662 3334444556688899988 666666666665433 4589999998874321 11222357
Q ss_pred ceeEEEeccch
Q 021467 105 QADLVCCFQHL 115 (312)
Q Consensus 105 ~fD~V~~~~~l 115 (312)
+.|++++....
T Consensus 80 ~ld~li~~ag~ 90 (167)
T PF00106_consen 80 PLDILINNAGI 90 (167)
T ss_dssp SESEEEEECSC
T ss_pred ccccccccccc
Confidence 89998876553
No 423
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=59.14 E-value=68 Score=29.48 Aligned_cols=97 Identities=11% Similarity=0.051 Sum_probs=52.6
Q ss_pred CCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh-hcCCce
Q 021467 30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQA 106 (312)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~-~~~~~f 106 (312)
.++.+||=.|||. |..+..+++. +...++++|.+++-++.+++. +. ..++ |........... .....+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga---~~~i--~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GA---MQTF--NSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CC---ceEe--cCcccCHHHHHHHhcCCCC
Confidence 4678999998764 2233444444 443588999999887766432 10 1111 111111111110 022457
Q ss_pred e-EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 107 D-LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 107 D-~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
| +|+-.-. -...+....++|++||.++..
T Consensus 230 d~~v~d~~G----------~~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 230 DQLILETAG----------VPQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred CeEEEECCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 7 5543221 123466677899999999876
No 424
>PRK07904 short chain dehydrogenase; Provisional
Probab=59.05 E-value=65 Score=28.25 Aligned_cols=83 Identities=10% Similarity=-0.016 Sum_probs=49.5
Q ss_pred CCCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHH-HHHHHHHHHhcCCCceEEEEEcCCCCCchh----hhhhhc
Q 021467 31 PYVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSG-IGEARDTWENQRKNFIAEFFEADPCAENFE----TQMQEK 102 (312)
Q Consensus 31 ~~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~-i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~----~~~~~~ 102 (312)
.+.+||=.|++.|- .+..+++.+..+|+.++-+++. ++.+.+.....+ ..++.++.+|+.+..-. .....
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~- 84 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAFA- 84 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHHh-
Confidence 45689999987662 2223333444689999988774 666555554322 12478899999774421 11111
Q ss_pred CCceeEEEeccch
Q 021467 103 ANQADLVCCFQHL 115 (312)
Q Consensus 103 ~~~fD~V~~~~~l 115 (312)
.+..|++++..+.
T Consensus 85 ~g~id~li~~ag~ 97 (253)
T PRK07904 85 GGDVDVAIVAFGL 97 (253)
T ss_pred cCCCCEEEEeeec
Confidence 2579987765543
No 425
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=58.60 E-value=69 Score=29.25 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=55.3
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHcCCCe-EEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCc
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETALIAN-YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQ 105 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~~-v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~ 105 (312)
..++.+||-.|+|. |..+..+++..... +++++-+++..+.+++ + +. ...+..+ .......... ....
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~-~---g~---~~~~~~~--~~~~~~~~~~~~~~~ 227 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE-L---GA---DDTINPK--EEDVEKVRELTEGRG 227 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH-c---CC---CEEecCc--cccHHHHHHHhCCCC
Confidence 34778999998654 44555555554444 9999998877766533 2 11 1111111 1111111111 2245
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
+|+|+..-. ....+..+.++|+++|.++...
T Consensus 228 ~d~vld~~g----------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 228 ADLVIEAAG----------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCEEEECCC----------CHHHHHHHHHHhhcCCEEEEEc
Confidence 999874321 1234667788999999988663
No 426
>PRK08655 prephenate dehydrogenase; Provisional
Probab=58.14 E-value=71 Score=31.02 Aligned_cols=100 Identities=14% Similarity=0.116 Sum_probs=54.3
Q ss_pred EEEEEC-CC-CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 34 TVCDLY-CG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 34 ~VLDlG-CG-~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
+|+=+| +| -|+.+...+.....+|+++|.+++........ .+ +.. ..| ... .-...|+|+.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~---~g----v~~-~~~-----~~e----~~~~aDvVIl 64 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE---LG----VEY-AND-----NID----AAKDADIVII 64 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH---cC----Cee-ccC-----HHH----HhccCCEEEE
Confidence 566676 56 34444443344345899999987664322221 12 211 111 111 1245798876
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHHH
Q 021467 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKYQ 157 (312)
Q Consensus 112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~~ 157 (312)
.-... ....++..+...+++|..++-+..-.....+.+.
T Consensus 65 avp~~-------~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~ 103 (437)
T PRK08655 65 SVPIN-------VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAME 103 (437)
T ss_pred ecCHH-------HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHH
Confidence 55433 3567788888889988766544433344444444
No 427
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=58.12 E-value=1e+02 Score=28.55 Aligned_cols=77 Identities=18% Similarity=0.131 Sum_probs=44.4
Q ss_pred EEEEECCCC-CccH-HHHHHcCCCeEEEEeCChHHH-------------------HHHHHHHHhcCCCceEEEEEcCCCC
Q 021467 34 TVCDLYCGA-GVDV-DKWETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEADPCA 92 (312)
Q Consensus 34 ~VLDlGCG~-G~~l-~~~~~~~~~~v~giDis~~~i-------------------~~a~~r~~~~~~~~~~~f~~~D~~~ 92 (312)
+||=+|||. |..+ ..++..+..+++-+|.+...+ +.|.++++..+...++..+..++.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 478899984 4333 344455888999999543322 3344455554444556666666654
Q ss_pred CchhhhhhhcCCceeEEEecc
Q 021467 93 ENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 93 ~~~~~~~~~~~~~fD~V~~~~ 113 (312)
..+... --..||+|++..
T Consensus 81 ~~~~~~---f~~~~DvVv~a~ 98 (312)
T cd01489 81 PDFNVE---FFKQFDLVFNAL 98 (312)
T ss_pred ccchHH---HHhcCCEEEECC
Confidence 321111 125799998655
No 428
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=57.91 E-value=93 Score=24.62 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=20.5
Q ss_pred EEEEECCC-CCccHH-HHHHcCCCeEEEEeCC
Q 021467 34 TVCDLYCG-AGVDVD-KWETALIANYIGIDVA 63 (312)
Q Consensus 34 ~VLDlGCG-~G~~l~-~~~~~~~~~v~giDis 63 (312)
+||=+||| .|..+. .+...+..+++.+|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 47788998 454333 4445577889999876
No 429
>PRK06125 short chain dehydrogenase; Provisional
Probab=57.89 E-value=61 Score=28.30 Aligned_cols=83 Identities=8% Similarity=-0.037 Sum_probs=49.3
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.+.++|=.|++.| ..+...+.....+|++++.+++.++.+.+.+.... ..++.++.+|+.+..-...+-...++.|+
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 3568888897655 22222233334499999999887776665554321 12367888998764321111112367898
Q ss_pred EEeccc
Q 021467 109 VCCFQH 114 (312)
Q Consensus 109 V~~~~~ 114 (312)
++...+
T Consensus 85 lv~~ag 90 (259)
T PRK06125 85 LVNNAG 90 (259)
T ss_pred EEECCC
Confidence 877654
No 430
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=57.83 E-value=75 Score=28.67 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=55.2
Q ss_pred CEEEEECCCCCc-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC------CCc-----------eEEEEEcCCCCCc
Q 021467 33 VTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQR------KNF-----------IAEFFEADPCAEN 94 (312)
Q Consensus 33 ~~VLDlGCG~G~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~------~~~-----------~~~f~~~D~~~~~ 94 (312)
.+|.=||+|.-| .+...+.....+|+.+|++++.++.++++..... ... ++. ...|
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d----- 77 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTD----- 77 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCC-----
Confidence 367788998533 3333333344589999999999998877643210 000 011 1111
Q ss_pred hhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEE
Q 021467 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYF 142 (312)
Q Consensus 95 ~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~ 142 (312)
+.+ .-...|+|+..-. +..+....+++.+...++++-++
T Consensus 78 ~~~----a~~~aDlVieavp-----e~~~~k~~~~~~l~~~~~~~~ii 116 (287)
T PRK08293 78 LAE----AVKDADLVIEAVP-----EDPEIKGDFYEELAKVAPEKTIF 116 (287)
T ss_pred HHH----HhcCCCEEEEecc-----CCHHHHHHHHHHHHhhCCCCCEE
Confidence 111 1245788776542 44555778889999988877654
No 431
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=57.73 E-value=59 Score=26.61 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=53.2
Q ss_pred EEEEECCCCCc--cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEEe
Q 021467 34 TVCDLYCGAGV--DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVCC 111 (312)
Q Consensus 34 ~VLDlGCG~G~--~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~~ 111 (312)
+|-=||+|.=+ .+..+.+.+ ..|++.|.+++..+...+.- +. ..+ +..+. -...|+|++
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~g--------~~--~~~----s~~e~----~~~~dvvi~ 63 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAG-YEVTVYDRSPEKAEALAEAG--------AE--VAD----SPAEA----AEQADVVIL 63 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-TEEEEEESSHHHHHHHHHTT--------EE--EES----SHHHH----HHHBSEEEE
T ss_pred EEEEEchHHHHHHHHHHHHhcC-CeEEeeccchhhhhhhHHhh--------hh--hhh----hhhhH----hhcccceEe
Confidence 45567877522 333444444 48999999987766555442 21 121 11111 134588775
Q ss_pred ccchhhhcCCHHHHHHHHHH--HHhccCCCcEEEEEecChhHHHHHH
Q 021467 112 FQHLQMCFETEERARRLLQN--VSSLLKPGGYFLGITPDSSTIWAKY 156 (312)
Q Consensus 112 ~~~lh~~~~~~~~~~~~l~~--i~~~LkpGG~~i~~~p~~~~l~~~~ 156 (312)
.- .+.+..+..+.. +...|++|.+++-+.........++
T Consensus 64 ~v------~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~ 104 (163)
T PF03446_consen 64 CV------PDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSREL 104 (163)
T ss_dssp -S------SSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHH
T ss_pred ec------ccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhh
Confidence 43 446668888888 9999999988886643333333333
No 432
>PRK07411 hypothetical protein; Validated
Probab=57.54 E-value=79 Score=30.18 Aligned_cols=79 Identities=15% Similarity=0.039 Sum_probs=47.4
Q ss_pred CCCEEEEECCCC-CccHH-HHHHcCCCeEEEEeCChHHH-------------------HHHHHHHHhcCCCceEEEEEcC
Q 021467 31 PYVTVCDLYCGA-GVDVD-KWETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEAD 89 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~-~~~~~~~~~v~giDis~~~i-------------------~~a~~r~~~~~~~~~~~f~~~D 89 (312)
...+||=+|||. |..+. .++..+..+++-+|.+...+ +.|.+++...+...++..+...
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~ 116 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR 116 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecc
Confidence 457999999984 44333 44455888999998654332 3344555554444556666665
Q ss_pred CCCCchhhhhhhcCCceeEEEecc
Q 021467 90 PCAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
+........ -..+|+|+...
T Consensus 117 ~~~~~~~~~----~~~~D~Vvd~~ 136 (390)
T PRK07411 117 LSSENALDI----LAPYDVVVDGT 136 (390)
T ss_pred cCHHhHHHH----HhCCCEEEECC
Confidence 554332111 25699988654
No 433
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=57.42 E-value=11 Score=39.08 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=61.7
Q ss_pred CEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh---------hhhhhc
Q 021467 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE---------TQMQEK 102 (312)
Q Consensus 33 ~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~---------~~~~~~ 102 (312)
.+|-=||+|+ |..+..+.......|+.+|++++.++.+.++....-... + ..+-+...... ..+. .
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~-~--~~g~~~~~~~~~~~~~i~~~~~~~-~ 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKK-V--KRKKITSLERDSILSNLTPTLDYS-G 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHH-H--HcCCCCHHHHHHHHhCeEEeCCHH-H
Confidence 4788899986 333333333334599999999999999887765320000 0 00000000000 0000 1
Q ss_pred CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
-...|+|+ .-++|+.+-..++++++.++++|+.+|.-.
T Consensus 412 ~~~aDlVi-----EAv~E~l~~K~~vf~~l~~~~~~~~ilasN 449 (737)
T TIGR02441 412 FKNADMVI-----EAVFEDLSLKHKVIKEVEAVVPPHCIIASN 449 (737)
T ss_pred hccCCeeh-----hhccccHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 13456654 446788999999999999999999776543
No 434
>PRK06128 oxidoreductase; Provisional
Probab=57.27 E-value=1.1e+02 Score=27.55 Aligned_cols=111 Identities=14% Similarity=0.016 Sum_probs=58.6
Q ss_pred CCEEEEECCCCC--ccH-HHHHHcCCCeEEEEeCChH--HHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhc
Q 021467 32 YVTVCDLYCGAG--VDV-DKWETALIANYIGIDVATS--GIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEK 102 (312)
Q Consensus 32 ~~~VLDlGCG~G--~~l-~~~~~~~~~~v~giDis~~--~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~ 102 (312)
+.+||=.|++.| ..+ ..++. ...+|+.++.+.+ ..+...+..+..+ .++.++.+|+.+..-.. .....
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~-~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAR-EGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHH-cCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 468999997555 222 23333 3447777766543 2333333333222 24778889998743211 11112
Q ss_pred CCceeEEEeccchhhh---c--CCHHHH-----------HHHHHHHHhccCCCcEEEEE
Q 021467 103 ANQADLVCCFQHLQMC---F--ETEERA-----------RRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 103 ~~~fD~V~~~~~lh~~---~--~~~~~~-----------~~~l~~i~~~LkpGG~~i~~ 145 (312)
-+..|+++.+.+.... + .+.++. -.+++.+...++++|.++.+
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 3578998876653211 1 122222 23555666677788887765
No 435
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=57.25 E-value=65 Score=29.62 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=55.7
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~ 104 (312)
..++.+||=.|+|. |..+..+++. +...++++|.+++..+.+++. +. ...+ |....++...+.. ...
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~---~~~v--~~~~~~~~~~i~~~~~~~ 234 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----GA---TDIV--DYKNGDVVEQILKLTGGK 234 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CC---ceEe--cCCCCCHHHHHHHHhCCC
Confidence 34678899988763 2233444444 444699999998877766642 10 1111 2222222211111 234
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
.+|+|+..-. + ...+..+.++|+++|+++..
T Consensus 235 ~~d~vld~~g------~----~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 235 GVDAVIIAGG------G----QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred CCcEEEECCC------C----HHHHHHHHHHhhcCCEEEEe
Confidence 6999874331 1 23467778889999999854
No 436
>PRK14852 hypothetical protein; Provisional
Probab=56.83 E-value=93 Score=33.48 Aligned_cols=78 Identities=14% Similarity=-0.037 Sum_probs=48.2
Q ss_pred CCCEEEEECCC-CCccHH-HHHHcCCCeEEEEeCChHHH-------------------HHHHHHHHhcCCCceEEEEEcC
Q 021467 31 PYVTVCDLYCG-AGVDVD-KWETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEAD 89 (312)
Q Consensus 31 ~~~~VLDlGCG-~G~~l~-~~~~~~~~~v~giDis~~~i-------------------~~a~~r~~~~~~~~~~~f~~~D 89 (312)
...+|+=+||| -|.... .++..+.++++-+|.+...+ +.+++++...+...+++.+...
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~ 410 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEG 410 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecC
Confidence 46899999999 565444 44455888888888654333 3344555554444556666666
Q ss_pred CCCCchhhhhhhcCCceeEEEec
Q 021467 90 PCAENFETQMQEKANQADLVCCF 112 (312)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~ 112 (312)
+........ -..+|+|+..
T Consensus 411 I~~en~~~f----l~~~DiVVDa 429 (989)
T PRK14852 411 VAAETIDAF----LKDVDLLVDG 429 (989)
T ss_pred CCHHHHHHH----hhCCCEEEEC
Confidence 544443222 2469999863
No 437
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=56.49 E-value=1e+02 Score=27.27 Aligned_cols=77 Identities=16% Similarity=0.105 Sum_probs=42.3
Q ss_pred EEEEECCC-CCccHHHH-HHcCCCeEEEEeCChHHH-------------------HHHHHHHHhcCCCceEEEEEcCCCC
Q 021467 34 TVCDLYCG-AGVDVDKW-ETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEADPCA 92 (312)
Q Consensus 34 ~VLDlGCG-~G~~l~~~-~~~~~~~v~giDis~~~i-------------------~~a~~r~~~~~~~~~~~f~~~D~~~ 92 (312)
+||=+||| .|..+.+. +..+..+++.+|.+.... +.|.++....+...++..+..++..
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 47888987 45444443 445888999998754332 2233344443334456666666533
Q ss_pred Cc-hhhhhhhcCCceeEEEecc
Q 021467 93 EN-FETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 93 ~~-~~~~~~~~~~~fD~V~~~~ 113 (312)
.. +... --..||+|++..
T Consensus 81 ~~~~~~~---f~~~~DvVi~a~ 99 (234)
T cd01484 81 EQDFNDT---FFEQFHIIVNAL 99 (234)
T ss_pred hhhchHH---HHhCCCEEEECC
Confidence 11 1110 125799988653
No 438
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.35 E-value=1.2e+02 Score=26.49 Aligned_cols=109 Identities=15% Similarity=0.076 Sum_probs=57.6
Q ss_pred CCEEEEECCC--CC--ccHHHHHHcCCCeEEEEeCCh--HHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhh
Q 021467 32 YVTVCDLYCG--AG--VDVDKWETALIANYIGIDVAT--SGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQE 101 (312)
Q Consensus 32 ~~~VLDlGCG--~G--~~l~~~~~~~~~~v~giDis~--~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~ 101 (312)
+.++|=.|+| .| ..+.+.+.....+|+.+|.+. +.++...+.... ++.++.+|+.+..-.. ....
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~i~~~~~~~~~ 81 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPE-----PAPVLELDVTNEEHLASLADRVRE 81 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCC-----CCcEEeCCCCCHHHHHHHHHHHHH
Confidence 5688999983 33 222222223445888888764 334443333221 2567889998753211 1112
Q ss_pred cCCceeEEEeccchhh------hcC--CHHHHH-----------HHHHHHHhccCCCcEEEEE
Q 021467 102 KANQADLVCCFQHLQM------CFE--TEERAR-----------RLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 102 ~~~~fD~V~~~~~lh~------~~~--~~~~~~-----------~~l~~i~~~LkpGG~~i~~ 145 (312)
..+..|+++.+..+.. -+. +.++.. .+.+.+...++++|.++.+
T Consensus 82 ~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~i 144 (256)
T PRK07889 82 HVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGL 144 (256)
T ss_pred HcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEE
Confidence 2467999888665421 011 222221 2344556667778877654
No 439
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=56.22 E-value=75 Score=29.56 Aligned_cols=100 Identities=13% Similarity=0.156 Sum_probs=61.0
Q ss_pred CCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.+.+|.=||+|. |.-+.+.+.....+|++.|.++..... . +.+ . .++.+ --...|+|
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~----~--------~~~-~-----~~l~e----ll~~aDiV 202 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLD----F--------LTY-K-----DSVKE----AIKDADII 202 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhh----h--------hhc-c-----CCHHH----HHhcCCEE
Confidence 467899999997 434444444445599999998753210 0 110 1 11211 12467888
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE----ecChhHHHHHHH
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI----TPDSSTIWAKYQ 157 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~----~p~~~~l~~~~~ 157 (312)
++.-... .+....+.+.+...+|+|.+++-+ ..|.+.+.+.++
T Consensus 203 il~lP~t-----~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 203 SLHVPAN-----KESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred EEeCCCc-----HHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH
Confidence 7655322 333444567888899999988866 667777777665
No 440
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=56.00 E-value=92 Score=29.62 Aligned_cols=107 Identities=17% Similarity=0.211 Sum_probs=56.9
Q ss_pred cCCCCEEEEEC-CCC-CccHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC-Cchhhhhhh-
Q 021467 29 SHPYVTVCDLY-CGA-GVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA-ENFETQMQE- 101 (312)
Q Consensus 29 ~~~~~~VLDlG-CG~-G~~l~~~~~~---~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~-~~~~~~~~~- 101 (312)
+.++.+||=+| +|. |..+..+++. +..+++++|.+++-++.|++.+........+.....|..+ .++...+..
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence 34678899887 453 4344455554 2347999999999998887753211000002211122221 122221111
Q ss_pred -cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 102 -KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 102 -~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
....+|+|+..-. ....+....+.|+++|.++..
T Consensus 253 t~g~g~D~vid~~g----------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 253 TGGQGFDDVFVFVP----------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred hCCCCCCEEEEcCC----------CHHHHHHHHHHhccCCeEEEE
Confidence 2346998875321 123456677789988876543
No 441
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=55.94 E-value=40 Score=32.43 Aligned_cols=87 Identities=17% Similarity=0.067 Sum_probs=51.3
Q ss_pred CCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
-.+.+|+=+|+|. |..+...++....+|+++|.++.-...|.. .+ ... .+. .+. -...|+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G----~~v--~~l-----eea----l~~aDV 253 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DG----FRV--MTM-----EEA----AKIGDI 253 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cC----CEe--CCH-----HHH----HhcCCE
Confidence 3688999999997 434444445445589999998864333322 12 111 121 111 135698
Q ss_pred EEeccchhhhcCCHHHHHHHHH-HHHhccCCCcEEEEE
Q 021467 109 VCCFQHLQMCFETEERARRLLQ-NVSSLLKPGGYFLGI 145 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~-~i~~~LkpGG~~i~~ 145 (312)
|++.-. ...++. .....+|+|++++.+
T Consensus 254 VItaTG----------~~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 254 FITATG----------NKDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred EEECCC----------CHHHHHHHHHhcCCCCcEEEEE
Confidence 776432 122333 366799999999876
No 442
>PRK10083 putative oxidoreductase; Provisional
Probab=55.85 E-value=94 Score=28.28 Aligned_cols=98 Identities=13% Similarity=0.155 Sum_probs=54.2
Q ss_pred cCCCCEEEEECCCC-CccHHHHHH-c-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCc
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWET-A-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQ 105 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~-~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~ 105 (312)
..++.+||=.|+|. |..+..+++ . +...++++|.+++..+.+++.- ++.+ .|.....+...+......
T Consensus 158 ~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~G--------a~~~-i~~~~~~~~~~~~~~g~~ 228 (339)
T PRK10083 158 PTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESG--------ADWV-INNAQEPLGEALEEKGIK 228 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhC--------CcEE-ecCccccHHHHHhcCCCC
Confidence 34678999999653 223334444 2 5556889999988877765431 1111 122222232222211223
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+|+.... ....+....+.|+++|.++..
T Consensus 229 ~d~vid~~g----------~~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 229 PTLIIDAAC----------HPSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCEEEECCC----------CHHHHHHHHHHhhcCCEEEEE
Confidence 567664331 012466677899999999876
No 443
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=55.82 E-value=85 Score=29.31 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=54.7
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHcC-CCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCC--Cchhhhhh-hcC
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETAL-IANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCA--ENFETQMQ-EKA 103 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~~-~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~--~~~~~~~~-~~~ 103 (312)
..++.+||=.|||. |..+..+++.. ..+|+++|.+++-++.|++.-.. ..+ |..+ .++...+. ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~-------~~i--~~~~~~~~~~~~v~~~~~ 253 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT-------DCV--NPNDYDKPIQEVIVEITD 253 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC-------eEE--cccccchhHHHHHHHHhC
Confidence 35788999999864 32334455554 44799999999988877543110 111 2111 11211111 012
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 021467 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (312)
Q Consensus 104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG-G~~i~~ 145 (312)
+.+|+|+-.-. . ...+....+.+++| |.++..
T Consensus 254 ~g~d~vid~~G------~----~~~~~~~~~~~~~~~G~~v~~ 286 (368)
T TIGR02818 254 GGVDYSFECIG------N----VNVMRAALECCHKGWGESIII 286 (368)
T ss_pred CCCCEEEECCC------C----HHHHHHHHHHhhcCCCeEEEE
Confidence 36898874431 1 22456666788886 988755
No 444
>PRK06940 short chain dehydrogenase; Provisional
Probab=55.65 E-value=74 Score=28.30 Aligned_cols=79 Identities=11% Similarity=0.043 Sum_probs=45.4
Q ss_pred EEEEECCC-CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh-hh--hcCCceeEE
Q 021467 34 TVCDLYCG-AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-MQ--EKANQADLV 109 (312)
Q Consensus 34 ~VLDlGCG-~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~-~~--~~~~~fD~V 109 (312)
.+|=-|+| -|..+.+.+. ...+|+.+|.+++.++.+.+..+..+ .++.++.+|+.+..-... +. ...+..|++
T Consensus 4 ~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 4 VVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred EEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 45555543 1222233333 45689999999887776665554322 347788999987532111 11 123578998
Q ss_pred Eeccch
Q 021467 110 CCFQHL 115 (312)
Q Consensus 110 ~~~~~l 115 (312)
+.+.+.
T Consensus 81 i~nAG~ 86 (275)
T PRK06940 81 VHTAGV 86 (275)
T ss_pred EECCCc
Confidence 877654
No 445
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=55.12 E-value=77 Score=27.65 Aligned_cols=77 Identities=10% Similarity=-0.056 Sum_probs=47.6
Q ss_pred EEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCCce
Q 021467 34 TVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQA 106 (312)
Q Consensus 34 ~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~~f 106 (312)
+||=.|++.|- .+..+++.+ .+|+.++.+++.++.+.+.....+ .+.++.+|+.+..-.. ......+..
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKG-ARVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 57777876551 223333334 589999999888877766664432 3678899987743211 111123678
Q ss_pred eEEEeccc
Q 021467 107 DLVCCFQH 114 (312)
Q Consensus 107 D~V~~~~~ 114 (312)
|+++...+
T Consensus 78 d~li~naG 85 (259)
T PRK08340 78 DALVWNAG 85 (259)
T ss_pred CEEEECCC
Confidence 99887654
No 446
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=54.24 E-value=1.2e+02 Score=28.27 Aligned_cols=97 Identities=14% Similarity=0.201 Sum_probs=54.9
Q ss_pred CCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh-hcCCce
Q 021467 30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ-EKANQA 106 (312)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~-~~~~~f 106 (312)
.++.+||=.|+|. |..+..+++. +...++++|.+++..+.+++.-. ..++. .....+...+. .....+
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-------~~~i~--~~~~~~~~~v~~~~~~~~ 255 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-------THVIN--PKEEDLVAAIREITGGGV 255 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-------cEEec--CCCcCHHHHHHHHhCCCC
Confidence 4678899888753 3333444444 44479999999887766644211 11221 12222211111 113568
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|+|+..-.- ...+..+.+.|+++|.++..
T Consensus 256 d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 256 DYALDTTGV----------PAVIEQAVDALAPRGTLALV 284 (365)
T ss_pred cEEEECCCC----------cHHHHHHHHHhccCCEEEEe
Confidence 998753210 12466778889999999865
No 447
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=54.13 E-value=94 Score=28.93 Aligned_cols=98 Identities=19% Similarity=0.185 Sum_probs=54.9
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHcCCC-eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC--chhhhhh-hcC
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE--NFETQMQ-EKA 103 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~-~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~--~~~~~~~-~~~ 103 (312)
+.++.+||=+|+|. |..+..+++.... .++++|.+++-++.+++. +. -..+ |..+. ++...+. ...
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----Ga---~~~i--~~~~~~~~~~~~v~~~~~ 254 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----GA---TDCV--NPKDHDKPIQQVLVEMTD 254 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CC---CEEE--cccccchHHHHHHHHHhC
Confidence 45788999998753 2233444444334 799999999988777542 11 1112 22111 1221111 112
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 021467 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPG-GYFLGI 145 (312)
Q Consensus 104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG-G~~i~~ 145 (312)
+.+|+|+-.-. + ...+....+.|+++ |.++..
T Consensus 255 ~g~d~vid~~g------~----~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 255 GGVDYTFECIG------N----VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred CCCcEEEECCC------C----hHHHHHHHHhhccCCCeEEEE
Confidence 46898875331 1 23456667789887 988865
No 448
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=54.09 E-value=1.1e+02 Score=27.75 Aligned_cols=98 Identities=15% Similarity=0.209 Sum_probs=54.1
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
..++.+||=.|||. |..+..+++. ...++++++-+++..+.+++ +.. -.++... ........+....+.+
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~-~g~------~~v~~~~-~~~~~~~~v~~~~~~~ 231 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKE-VGA------DLTINSK-RVEDVAKIIQEKTGGA 231 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHH-cCC------cEEeccc-ccccHHHHHHHhcCCC
Confidence 34778999998642 3344445554 35689999999988888743 311 0111111 0011212121112357
Q ss_pred eE-EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 107 DL-VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 107 D~-V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|+ +.+.. + ...+..+.+.|+++|.++..
T Consensus 232 d~vi~~~~-------~----~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 232 HAAVVTAV-------A----KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred cEEEEeCC-------C----HHHHHHHHHhccCCCEEEEE
Confidence 74 43322 1 23467778899999999865
No 449
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=54.00 E-value=1.4e+02 Score=26.18 Aligned_cols=78 Identities=13% Similarity=0.070 Sum_probs=43.3
Q ss_pred CCEEEEECCC-CCccH-HHHHHcCCCeEEEEeCChHHH-------------------HHHHHHHHhcCCCceEEEEEcCC
Q 021467 32 YVTVCDLYCG-AGVDV-DKWETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEADP 90 (312)
Q Consensus 32 ~~~VLDlGCG-~G~~l-~~~~~~~~~~v~giDis~~~i-------------------~~a~~r~~~~~~~~~~~f~~~D~ 90 (312)
+.+||=+||| -|..+ ..++..+..+++-+|.+.... +.+.+++...+...+++.+...+
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i 90 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFL 90 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 5789999998 45443 344456888999999654222 23344554444334455444444
Q ss_pred CCCchhhhhhhcCCceeEEEec
Q 021467 91 CAENFETQMQEKANQADLVCCF 112 (312)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~ 112 (312)
........+ ...||+|+..
T Consensus 91 ~~~~~~~l~---~~~~D~Vvda 109 (231)
T cd00755 91 TPDNSEDLL---GGDPDFVVDA 109 (231)
T ss_pred CHhHHHHHh---cCCCCEEEEc
Confidence 332221111 2459988764
No 450
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.57 E-value=1.6e+02 Score=25.87 Aligned_cols=80 Identities=13% Similarity=-0.014 Sum_probs=43.1
Q ss_pred CCCEEEEECCC----CCccHHHHHHcCCCeEEEEeCCh---HHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hh
Q 021467 31 PYVTVCDLYCG----AGVDVDKWETALIANYIGIDVAT---SGIGEARDTWENQRKNFIAEFFEADPCAENFET----QM 99 (312)
Q Consensus 31 ~~~~VLDlGCG----~G~~l~~~~~~~~~~v~giDis~---~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~ 99 (312)
.+.++|=.|.+ -|..+.+.+.....+|+.++.+. +.++...+... ..++.++.+|+.+..-.. .+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE----GQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC----CCceEEEecCCCCHHHHHHHHHHH
Confidence 35688999975 33222222223445888876543 33443333321 123678889998754211 12
Q ss_pred hhcCCceeEEEeccc
Q 021467 100 QEKANQADLVCCFQH 114 (312)
Q Consensus 100 ~~~~~~fD~V~~~~~ 114 (312)
....++.|+++.+..
T Consensus 82 ~~~~g~ld~lv~nag 96 (257)
T PRK08594 82 KEEVGVIHGVAHCIA 96 (257)
T ss_pred HHhCCCccEEEECcc
Confidence 223477998876544
No 451
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=53.23 E-value=44 Score=30.53 Aligned_cols=89 Identities=15% Similarity=0.078 Sum_probs=51.0
Q ss_pred CCCEEEEECCCCCc-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.+.+|+=+|+|.=+ .+...++....+|+.+|.++...+.++. .+ +.+... ..+.. .-..+|+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G----~~~~~~----~~l~~----~l~~aDiV 214 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MG----LSPFHL----SELAE----EVGKIDII 214 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----CeeecH----HHHHH----HhCCCCEE
Confidence 57899999998633 3334444444599999999776554432 22 222211 11111 12569999
Q ss_pred EeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 110 CCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+..-..+ ..-+...+.++||+.++=.
T Consensus 215 I~t~p~~----------~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 215 FNTIPAL----------VLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred EECCChh----------hhhHHHHHcCCCCcEEEEE
Confidence 8753211 1224455678998887744
No 452
>PRK07109 short chain dehydrogenase; Provisional
Probab=53.23 E-value=1.6e+02 Score=27.10 Aligned_cols=81 Identities=12% Similarity=-0.079 Sum_probs=49.8
Q ss_pred CCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hhhcCCc
Q 021467 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKANQ 105 (312)
Q Consensus 32 ~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~----~~~~~~~ 105 (312)
+.+||=.|++.| ..+.+.+.....+|+.++-+++.++...+.....+ .++.++.+|+.+..-... ....-++
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 467888887655 22222233344589999999888877666655432 247788999987432111 1112357
Q ss_pred eeEEEeccc
Q 021467 106 ADLVCCFQH 114 (312)
Q Consensus 106 fD~V~~~~~ 114 (312)
.|+++....
T Consensus 86 iD~lInnAg 94 (334)
T PRK07109 86 IDTWVNNAM 94 (334)
T ss_pred CCEEEECCC
Confidence 898887654
No 453
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=52.99 E-value=1.3e+02 Score=26.64 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=24.8
Q ss_pred CCCEEEEECCCC-CccHH-HHHHcCCCeEEEEeCChHH
Q 021467 31 PYVTVCDLYCGA-GVDVD-KWETALIANYIGIDVATSG 66 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~-~~~~~~~~~v~giDis~~~ 66 (312)
.+.+||=+|||. |..+. .++..+..+++.+|.+...
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 357899999984 54433 4445588899998876543
No 454
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=52.70 E-value=80 Score=28.37 Aligned_cols=96 Identities=13% Similarity=0.001 Sum_probs=50.8
Q ss_pred EEEEECCCCCccHH-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCC-chhhhhhhcCCceeEEEe
Q 021467 34 TVCDLYCGAGVDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAE-NFETQMQEKANQADLVCC 111 (312)
Q Consensus 34 ~VLDlGCG~G~~l~-~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~-~~~~~~~~~~~~fD~V~~ 111 (312)
+|+=+|+|.-|... ..+.....+|+.+|-+++.++..++. +. .+. .++.... ....... ....+|+|+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~----g~--~~~--~~~~~~~~~~~~~~~-~~~~~d~vil 72 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN----GL--RLE--DGEITVPVLAADDPA-ELGPQDLVIL 72 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc----CC--ccc--CCceeecccCCCChh-HcCCCCEEEE
Confidence 67889998754333 22233345899999877666554432 11 010 1110000 0000001 1267898876
Q ss_pred ccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 112 FQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 112 ~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
.---+ +...+++.+...+.++..++..
T Consensus 73 a~k~~-------~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 73 AVKAY-------QLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred ecccc-------cHHHHHHHHhhhcCCCCEEEEe
Confidence 54222 2677888888888877666543
No 455
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=52.65 E-value=17 Score=37.71 Aligned_cols=96 Identities=13% Similarity=0.027 Sum_probs=61.0
Q ss_pred CEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-------CCC---------ceEEEEEcCCCCCch
Q 021467 33 VTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RKN---------FIAEFFEADPCAENF 95 (312)
Q Consensus 33 ~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~-------~~~---------~~~~f~~~D~~~~~~ 95 (312)
.+|.=||+|+ |..+..+.......|+.+|++++.++.+.++.... +.. .++++ ..|.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~----- 387 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP-TLDY----- 387 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE-eCCH-----
Confidence 4789999997 43333333334459999999999999887765431 100 00111 0111
Q ss_pred hhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEE
Q 021467 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (312)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~ 144 (312)
. .-...|+|+= ..+++.+-...+++++.+.++|+.++.-
T Consensus 388 ----~-~~~~aDlViE-----av~E~l~~K~~vf~~l~~~~~~~~ilas 426 (715)
T PRK11730 388 ----A-GFERVDVVVE-----AVVENPKVKAAVLAEVEQKVREDTILAS 426 (715)
T ss_pred ----H-HhcCCCEEEe-----cccCcHHHHHHHHHHHHhhCCCCcEEEE
Confidence 0 1245676653 2468888899999999999999966543
No 456
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=52.62 E-value=1.4e+02 Score=28.38 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=45.1
Q ss_pred CCCEEEEECCCC-CccHH-HHHHcCCCeEEEEeCChH-------------------HHHHHHHHHHhcCCCceEEEEEcC
Q 021467 31 PYVTVCDLYCGA-GVDVD-KWETALIANYIGIDVATS-------------------GIGEARDTWENQRKNFIAEFFEAD 89 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~-~~~~~~~~~v~giDis~~-------------------~i~~a~~r~~~~~~~~~~~f~~~D 89 (312)
.+.+||=+|||. |..+. .++..+..+++.+|.+.. -.+.+.+++...+...+++.+...
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 119 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRER 119 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeee
Confidence 467999999984 44333 344558889999997632 123445555554434445555444
Q ss_pred CCCCchhhhhhhcCCceeEEEecc
Q 021467 90 PCAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
+........ -..+|+|+...
T Consensus 120 i~~~~~~~~----~~~~DlVid~~ 139 (370)
T PRK05600 120 LTAENAVEL----LNGVDLVLDGS 139 (370)
T ss_pred cCHHHHHHH----HhCCCEEEECC
Confidence 433222111 24699987543
No 457
>PRK07877 hypothetical protein; Provisional
Probab=52.51 E-value=69 Score=33.33 Aligned_cols=79 Identities=11% Similarity=0.017 Sum_probs=49.4
Q ss_pred CCCEEEEECCCCCccHHHHH-HcCC-CeEEEEeCChHHH------------------HHHHHHHHhcCCCceEEEEEcCC
Q 021467 31 PYVTVCDLYCGAGVDVDKWE-TALI-ANYIGIDVATSGI------------------GEARDTWENQRKNFIAEFFEADP 90 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~-~~~~-~~v~giDis~~~i------------------~~a~~r~~~~~~~~~~~f~~~D~ 90 (312)
...+|+=+|||-|+.....+ ..+. ++++-+|.+...+ +.|++++...+...++..+...+
T Consensus 106 ~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i 185 (722)
T PRK07877 106 GRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL 185 (722)
T ss_pred hcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 46799999999887555544 4574 7898888654332 33445555544455677777766
Q ss_pred CCCchhhhhhhcCCceeEEEecc
Q 021467 91 CAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 91 ~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
....+...+ ..+|+|+...
T Consensus 186 ~~~n~~~~l----~~~DlVvD~~ 204 (722)
T PRK07877 186 TEDNVDAFL----DGLDVVVEEC 204 (722)
T ss_pred CHHHHHHHh----cCCCEEEECC
Confidence 654443222 4589887644
No 458
>PRK09186 flagellin modification protein A; Provisional
Probab=52.49 E-value=90 Score=26.96 Aligned_cols=82 Identities=15% Similarity=-0.007 Sum_probs=47.7
Q ss_pred CCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCCc
Q 021467 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQ 105 (312)
Q Consensus 32 ~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~~ 105 (312)
+.+||=.|++.| ..+...+.....++++++.+++.++.+.+..........+.++.+|+.+..-.. .....-+.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~ 83 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYGK 83 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 567888887544 333333333445899999998887776665532211123567789998743211 11112356
Q ss_pred eeEEEecc
Q 021467 106 ADLVCCFQ 113 (312)
Q Consensus 106 fD~V~~~~ 113 (312)
.|+|+...
T Consensus 84 id~vi~~A 91 (256)
T PRK09186 84 IDGAVNCA 91 (256)
T ss_pred ccEEEECC
Confidence 89887664
No 459
>PRK08251 short chain dehydrogenase; Provisional
Probab=51.98 E-value=1.3e+02 Score=25.80 Aligned_cols=81 Identities=7% Similarity=-0.056 Sum_probs=49.2
Q ss_pred CCEEEEECCCCCccHH----HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcC
Q 021467 32 YVTVCDLYCGAGVDVD----KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (312)
Q Consensus 32 ~~~VLDlGCG~G~~l~----~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~ 103 (312)
+.++|=.|+..| .-. .+++.+ .+|+.++-+++.++.............++.++.+|+.+..-.. .+....
T Consensus 2 ~k~vlItGas~g-iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (248)
T PRK08251 2 RQKILITGASSG-LGAGMAREFAAKG-RDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDEL 79 (248)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 356888886544 332 333334 5899999998888776665543322345888999998753211 111123
Q ss_pred CceeEEEeccc
Q 021467 104 NQADLVCCFQH 114 (312)
Q Consensus 104 ~~fD~V~~~~~ 114 (312)
+..|+|+...+
T Consensus 80 ~~id~vi~~ag 90 (248)
T PRK08251 80 GGLDRVIVNAG 90 (248)
T ss_pred CCCCEEEECCC
Confidence 56898877654
No 460
>PRK06197 short chain dehydrogenase; Provisional
Probab=51.88 E-value=85 Score=28.30 Aligned_cols=84 Identities=8% Similarity=-0.110 Sum_probs=49.4
Q ss_pred CCCEEEEECCCCC--ccHH-HHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcC
Q 021467 31 PYVTVCDLYCGAG--VDVD-KWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKA 103 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~-~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~ 103 (312)
.+.+||=.|+..| ..+. .++. ...+|+.++-+.+..+.+.+.........++.++.+|+.+..-.. .+....
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~-~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 93 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAA-KGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY 93 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence 4568888886544 2222 2333 345899999888777666555443211234788899998754211 111123
Q ss_pred CceeEEEeccch
Q 021467 104 NQADLVCCFQHL 115 (312)
Q Consensus 104 ~~fD~V~~~~~l 115 (312)
+..|+++...+.
T Consensus 94 ~~iD~li~nAg~ 105 (306)
T PRK06197 94 PRIDLLINNAGV 105 (306)
T ss_pred CCCCEEEECCcc
Confidence 578998876654
No 461
>PRK09072 short chain dehydrogenase; Provisional
Probab=51.64 E-value=1.6e+02 Score=25.57 Aligned_cols=80 Identities=9% Similarity=-0.071 Sum_probs=48.8
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~ 104 (312)
++.+||=.|++.| ..+.+.+.....+|++++.+++.++........ ..++.++.+|+.+..-.. ... ..+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~-~~~ 79 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAR-EMG 79 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHH-hcC
Confidence 3567888887654 223333333445899999998887766655422 124788899998743211 111 135
Q ss_pred ceeEEEeccc
Q 021467 105 QADLVCCFQH 114 (312)
Q Consensus 105 ~fD~V~~~~~ 114 (312)
..|+|+...+
T Consensus 80 ~id~lv~~ag 89 (263)
T PRK09072 80 GINVLINNAG 89 (263)
T ss_pred CCCEEEECCC
Confidence 6898887654
No 462
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=51.63 E-value=15 Score=37.93 Aligned_cols=97 Identities=20% Similarity=0.118 Sum_probs=61.6
Q ss_pred CEEEEECCCC-CccHH-HHHHcCCCeEEEEeCChHHHHHHHHHHHhc-------CCC---------ceEEEEEcCCCCCc
Q 021467 33 VTVCDLYCGA-GVDVD-KWETALIANYIGIDVATSGIGEARDTWENQ-------RKN---------FIAEFFEADPCAEN 94 (312)
Q Consensus 33 ~~VLDlGCG~-G~~l~-~~~~~~~~~v~giDis~~~i~~a~~r~~~~-------~~~---------~~~~f~~~D~~~~~ 94 (312)
.+|.=||+|+ |.-+. .++......|+.+|++++.++.+..+.... +.. .++.+. .|
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~----- 383 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TD----- 383 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CC-----
Confidence 5789999997 43333 333244459999999999999987765431 100 001111 11
Q ss_pred hhhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 95 FETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 95 ~~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+ . .-...|+|+ .-.+++.+-.+.+++++.++++|+.+|.-.
T Consensus 384 ~----~-~~~~aDlVi-----Eav~E~~~~K~~v~~~le~~~~~~~ilasn 424 (708)
T PRK11154 384 Y----R-GFKHADVVI-----EAVFEDLALKQQMVAEVEQNCAPHTIFASN 424 (708)
T ss_pred h----H-HhccCCEEe-----ecccccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 1 0 124566665 334688888999999999999999776533
No 463
>PRK12829 short chain dehydrogenase; Provisional
Probab=51.48 E-value=71 Score=27.74 Aligned_cols=80 Identities=11% Similarity=-0.052 Sum_probs=48.1
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~ 104 (312)
++.++|=.|++.| ..+.+.+.....+|++++-+++.++...+..... ++.++.+|+.+..-.. ......+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA----KVTATVADVADPAQVERVFDTAVERFG 85 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC----ceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5689999997644 2333333334458999999887766554444322 3678899988744211 1111125
Q ss_pred ceeEEEeccc
Q 021467 105 QADLVCCFQH 114 (312)
Q Consensus 105 ~fD~V~~~~~ 114 (312)
+.|+|+...+
T Consensus 86 ~~d~vi~~ag 95 (264)
T PRK12829 86 GLDVLVNNAG 95 (264)
T ss_pred CCCEEEECCC
Confidence 7898876554
No 464
>PRK05867 short chain dehydrogenase; Provisional
Probab=51.17 E-value=1.1e+02 Score=26.46 Aligned_cols=83 Identities=11% Similarity=-0.078 Sum_probs=50.9
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~ 104 (312)
.+.++|=.|++.| ..+.+.+.....+|+.++.+.+.++...+.....+ .++.++.+|+.+..-.. ......+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678999998765 22222222344589999999888777666554432 24778889987743211 1111235
Q ss_pred ceeEEEeccch
Q 021467 105 QADLVCCFQHL 115 (312)
Q Consensus 105 ~fD~V~~~~~l 115 (312)
+.|+++...+.
T Consensus 86 ~id~lv~~ag~ 96 (253)
T PRK05867 86 GIDIAVCNAGI 96 (253)
T ss_pred CCCEEEECCCC
Confidence 78988876543
No 465
>PRK07806 short chain dehydrogenase; Provisional
Probab=50.85 E-value=1.6e+02 Score=25.24 Aligned_cols=112 Identities=15% Similarity=-0.012 Sum_probs=57.8
Q ss_pred CCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCCh-HHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh----hhhcCC
Q 021467 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVAT-SGIGEARDTWENQRKNFIAEFFEADPCAENFETQ----MQEKAN 104 (312)
Q Consensus 32 ~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~-~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~----~~~~~~ 104 (312)
+.++|-.|+..| ..+.+.+.....+|++++-+. ...+......+..+ .++.++.+|+.+..-... +...-+
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 468998997444 222222223345888887654 23343333333222 236788999987432111 111124
Q ss_pred ceeEEEeccchhhhc---------CCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 105 QADLVCCFQHLQMCF---------ETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 105 ~fD~V~~~~~lh~~~---------~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
..|+|+...+..... .+......+++.+...++.+|.++.+
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 84 GLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 688877554321100 01122345667777776666776655
No 466
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=50.77 E-value=1.1e+02 Score=27.34 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=54.6
Q ss_pred EEEEECCCC-Cc-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-------CC-C--------ceEEEEEcCCCCCch
Q 021467 34 TVCDLYCGA-GV-DVDKWETALIANYIGIDVATSGIGEARDTWENQ-------RK-N--------FIAEFFEADPCAENF 95 (312)
Q Consensus 34 ~VLDlGCG~-G~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~-------~~-~--------~~~~f~~~D~~~~~~ 95 (312)
+|.=||+|. |. .+..++..+ .+|+++|++++.++.++++.+.. +. . .++.+ ..|.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g-~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~----- 77 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAG-YDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL----- 77 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCC-CceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH-----
Confidence 577788885 32 333444444 48999999999998776544321 10 0 00111 1111
Q ss_pred hhhhhhcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEE
Q 021467 96 ETQMQEKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFL 143 (312)
Q Consensus 96 ~~~~~~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i 143 (312)
. .-...|+|+..- .++.+....+++.+.+.++|+..+.
T Consensus 78 ~-----~~~~aDlVi~av-----~e~~~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 78 D-----DLKDADLVIEAA-----TENMDLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred H-----HhccCCeeeecc-----cccHHHHHHHHHHHHhhCCCCcEEE
Confidence 0 124578876443 2344555789999999999987763
No 467
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=50.75 E-value=95 Score=28.36 Aligned_cols=75 Identities=9% Similarity=-0.019 Sum_probs=44.8
Q ss_pred CCCEEEEECCCC-CccHH-HHHHcCCCeEEEEeCChHHH-------------------HHHHHHHHhcCCCceEEEEEcC
Q 021467 31 PYVTVCDLYCGA-GVDVD-KWETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEAD 89 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~-~~~~~~~~~v~giDis~~~i-------------------~~a~~r~~~~~~~~~~~f~~~D 89 (312)
...+||=+|||. |..+. .++..+..+++-+|.....+ +.+.+++++.+...+++.+...
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 97 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP 97 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 357899999974 44333 34445888999999654222 3344555555544556666554
Q ss_pred CCCCchhhhhhhcCCceeEEEecc
Q 021467 90 PCAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
..... -..||+|++..
T Consensus 98 ~~~~~--------l~~fdvVV~~~ 113 (286)
T cd01491 98 LTTDE--------LLKFQVVVLTD 113 (286)
T ss_pred CCHHH--------HhcCCEEEEec
Confidence 32211 25799888764
No 468
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=50.74 E-value=15 Score=37.97 Aligned_cols=106 Identities=8% Similarity=-0.044 Sum_probs=60.7
Q ss_pred CEEEEECCCC-Cc-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcC----CCceEEEEEcCC--CCCchhhhhhhcCC
Q 021467 33 VTVCDLYCGA-GV-DVDKWETALIANYIGIDVATSGIGEARDTWENQR----KNFIAEFFEADP--CAENFETQMQEKAN 104 (312)
Q Consensus 33 ~~VLDlGCG~-G~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~----~~~~~~f~~~D~--~~~~~~~~~~~~~~ 104 (312)
.+|-=||+|+ |. .+..++.++ ..|+.+|++++.++.+.++....- ...++.-...+. ........+. .-.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G-~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 391 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKG-TPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFD 391 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence 3688899986 33 333333444 599999999999998877654310 000000000000 0000000000 124
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
..|+|+= .++++.+-.+++++++.++++|+.+|.-.
T Consensus 392 ~aDlViE-----av~E~l~~K~~vf~~l~~~~~~~~ilasn 427 (714)
T TIGR02437 392 NVDIVVE-----AVVENPKVKAAVLAEVEQHVREDAILASN 427 (714)
T ss_pred CCCEEEE-----cCcccHHHHHHHHHHHHhhCCCCcEEEEC
Confidence 5677653 35688899999999999999999766533
No 469
>PRK05872 short chain dehydrogenase; Provisional
Probab=50.51 E-value=1.9e+02 Score=25.95 Aligned_cols=82 Identities=12% Similarity=-0.002 Sum_probs=49.3
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~ 104 (312)
++.+||=.|++.| ..+.+.+.....+|+.++.+++.++...+.... ...+..+.+|+.+..-.. .+....+
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERFG 84 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4678999997665 222232333445899999998877766555432 123555668987743211 1111236
Q ss_pred ceeEEEeccch
Q 021467 105 QADLVCCFQHL 115 (312)
Q Consensus 105 ~fD~V~~~~~l 115 (312)
..|+|+.+.+.
T Consensus 85 ~id~vI~nAG~ 95 (296)
T PRK05872 85 GIDVVVANAGI 95 (296)
T ss_pred CCCEEEECCCc
Confidence 79999887654
No 470
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=50.28 E-value=48 Score=32.11 Aligned_cols=86 Identities=15% Similarity=0.039 Sum_probs=51.2
Q ss_pred CCCEEEEECCCCCc-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEE
Q 021467 31 PYVTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLV 109 (312)
Q Consensus 31 ~~~~VLDlGCG~G~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V 109 (312)
.+.+|+=+|+|.=| .+...++....+|+.+|+++.....|... + ... .+ +.+. -...|+|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~----G----~~v--~~-----l~ea----l~~aDVV 271 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD----G----FRV--MT-----MEEA----AELGDIF 271 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc----C----CEe--cC-----HHHH----HhCCCEE
Confidence 68899999999633 33344444445899999998654433221 2 111 11 1111 2468998
Q ss_pred EeccchhhhcCCHHHHHHHHH-HHHhccCCCcEEEEE
Q 021467 110 CCFQHLQMCFETEERARRLLQ-NVSSLLKPGGYFLGI 145 (312)
Q Consensus 110 ~~~~~lh~~~~~~~~~~~~l~-~i~~~LkpGG~~i~~ 145 (312)
+..-.- ..++. .....+|+|++++..
T Consensus 272 I~aTG~----------~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 272 VTATGN----------KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred EECCCC----------HHHHHHHHHhcCCCCCEEEEc
Confidence 764321 22343 566789999999876
No 471
>PRK06484 short chain dehydrogenase; Validated
Probab=49.61 E-value=2e+02 Score=28.07 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=60.4
Q ss_pred CCEEEEECCCCCc---cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCC
Q 021467 32 YVTVCDLYCGAGV---DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (312)
Q Consensus 32 ~~~VLDlGCG~G~---~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~ 104 (312)
+..+|=.|++.|- .+..+++.+ .+|+.++.+++.++...+.... ++..+.+|+.+..-.. ......+
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAG-DRLLIIDRDAEGAKKLAEALGD-----EHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHhCC-----ceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4577878876651 222333334 5899999998877766554421 2566788988753211 1111236
Q ss_pred ceeEEEeccchhhh---c--CCHHHHHH-----------HHHHHHhccCCCcEEEEE
Q 021467 105 QADLVCCFQHLQMC---F--ETEERARR-----------LLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 105 ~fD~V~~~~~lh~~---~--~~~~~~~~-----------~l~~i~~~LkpGG~~i~~ 145 (312)
..|+++.+.+.... + .+.++.+. +.+.+...++.+|.++.+
T Consensus 343 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~i 399 (520)
T PRK06484 343 RLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNL 399 (520)
T ss_pred CCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEE
Confidence 78988876543110 0 12222222 244445556677887766
No 472
>PRK08507 prephenate dehydrogenase; Validated
Probab=49.31 E-value=1.4e+02 Score=26.74 Aligned_cols=97 Identities=12% Similarity=0.106 Sum_probs=52.9
Q ss_pred EEEEECCCC-Cc-cHHHHHHcCC-CeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeEEE
Q 021467 34 TVCDLYCGA-GV-DVDKWETALI-ANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADLVC 110 (312)
Q Consensus 34 ~VLDlGCG~-G~-~l~~~~~~~~-~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~V~ 110 (312)
+|.=||+|. |+ .+..+...+. ..++++|.+++.++.+.+. +. + |... ...+ . ...|+|+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~----g~---~-----~~~~-~~~~----~-~~aD~Vi 63 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL----GL---V-----DEIV-SFEE----L-KKCDVIF 63 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC----CC---C-----cccC-CHHH----H-hcCCEEE
Confidence 466678886 22 3344444443 3799999999877765431 20 0 1111 1111 1 1279887
Q ss_pred eccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHHHHHH
Q 021467 111 CFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTIWAKY 156 (312)
Q Consensus 111 ~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l~~~~ 156 (312)
..-. .......+..+.. +++|..++-.......+.+.+
T Consensus 64 lavp-------~~~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~ 101 (275)
T PRK08507 64 LAIP-------VDAIIEILPKLLD-IKENTTIIDLGSTKAKIIESV 101 (275)
T ss_pred EeCc-------HHHHHHHHHHHhc-cCCCCEEEECccchHHHHHHH
Confidence 5543 3346777888888 888876553333334444433
No 473
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=49.15 E-value=1.1e+02 Score=28.40 Aligned_cols=95 Identities=21% Similarity=0.084 Sum_probs=51.7
Q ss_pred CCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 30 HPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
.++.+||=.|+|. |..+..+++....++++++.+++....+.+.+. +.... +..+.. .+......+|+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~G-------a~~~i-~~~~~~---~~~~~~~~~D~ 247 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLG-------ADDYL-VSSDAA---EMQEAADSLDY 247 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcC-------CcEEe-cCCChH---HHHHhcCCCcE
Confidence 3678888887653 333344555544578889888776655544332 11111 111110 11111235888
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|+-.-. ....+..+.+.|++||+++..
T Consensus 248 vid~~g----------~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 248 IIDTVP----------VFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred EEECCC----------chHHHHHHHHHhccCCEEEEE
Confidence 774331 112455667789999999865
No 474
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=49.13 E-value=1.4e+02 Score=27.35 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=54.0
Q ss_pred CCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh-cCCcee
Q 021467 31 PYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE-KANQAD 107 (312)
Q Consensus 31 ~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~-~~~~fD 107 (312)
++.+||-.|+|. |..+..+++. +...+++++.+++..+.+++ + + +..+ .|.....+...+.. ..+.+|
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~---g----~~~~-~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA-A---G----ADVV-VNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH-h---C----CcEE-ecCCCccHHHHHHHHhCCCCc
Confidence 577888887653 3333444454 44479999998887776643 2 1 1111 12122222111111 123689
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+.... ....+..+.+.|+++|+++..
T Consensus 246 ~vid~~g----------~~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 246 AVIDFVN----------NSATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EEEECCC----------CHHHHHHHHHHhhcCCeEEEE
Confidence 9875431 012467778899999999865
No 475
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=49.08 E-value=1.1e+02 Score=28.07 Aligned_cols=99 Identities=17% Similarity=0.154 Sum_probs=55.8
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHcCCCe-EEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch---hhhhh--h
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETALIAN-YIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENF---ETQMQ--E 101 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~~-v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~---~~~~~--~ 101 (312)
..++.+||-.|+|. |..+..+++....+ +++++-+++..+.+++. +. -.++ |...... ...+. .
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~---~~vi--~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GA---THTV--NVRTEDTPESAEKIAELL 230 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CC---cEEe--ccccccchhHHHHHHHHh
Confidence 34788888888754 44445555554445 89998888777666442 10 1111 1111111 11111 1
Q ss_pred cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 102 KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 102 ~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
....+|+|+-...- ...+....+.|+++|.++...
T Consensus 231 ~~~~~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTGA----------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEEc
Confidence 23569998754321 124677788999999998653
No 476
>PRK07890 short chain dehydrogenase; Provisional
Probab=48.93 E-value=1.3e+02 Score=26.04 Aligned_cols=82 Identities=12% Similarity=-0.022 Sum_probs=49.4
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~ 104 (312)
++.+||=.|++.| ..+.+.+.....+|+++|.++..++...+.....+ .++.++.+|+.+..-.. .....-+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 3568888887655 22222223344599999999887776665554322 23788999997743211 1111235
Q ss_pred ceeEEEeccc
Q 021467 105 QADLVCCFQH 114 (312)
Q Consensus 105 ~fD~V~~~~~ 114 (312)
..|+|+....
T Consensus 82 ~~d~vi~~ag 91 (258)
T PRK07890 82 RVDALVNNAF 91 (258)
T ss_pred CccEEEECCc
Confidence 7898887654
No 477
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=48.61 E-value=1.6e+02 Score=26.08 Aligned_cols=96 Identities=18% Similarity=0.090 Sum_probs=56.5
Q ss_pred cCCCCEEEEECCC--CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCce
Q 021467 29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQA 106 (312)
Q Consensus 29 ~~~~~~VLDlGCG--~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~f 106 (312)
..++.+||=.|++ .|..+..+++....++++++.+++..+.+++ .+ +..+..+ ..++...+......+
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g----~~~~~~~--~~~~~~~i~~~~~~~ 209 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LG----ADEVVID--DGAIAEQLRAAPGGF 209 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cC----CcEEEec--CccHHHHHHHhCCCc
Confidence 3467889888863 4445555666655689999999877666633 12 1111111 112222221113569
Q ss_pred eEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 107 DLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 107 D~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
|+|+.... ...+..+.+.|+++|.++..
T Consensus 210 d~vl~~~~-----------~~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 210 DKVLELVG-----------TATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred eEEEECCC-----------hHHHHHHHHHhccCCEEEEE
Confidence 99875431 12466777899999999865
No 478
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=48.59 E-value=28 Score=30.58 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhcCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHh
Q 021467 15 RLYEFAKTALIKIYSHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWEN 76 (312)
Q Consensus 15 ~~~n~vk~~li~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~ 76 (312)
++..||...+-.. +..+++|+=||+|..+..+.. ....++.-|+.+..+...+...+.
T Consensus 7 ~l~~~I~~~ip~~---~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 7 KLAKWIIELIPKN---KHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp GGHHHHHHHS-S----S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---CCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHhc
Confidence 4556655544222 678999999999966555433 566899999999988877754443
No 479
>PRK06194 hypothetical protein; Provisional
Probab=48.58 E-value=1e+02 Score=27.34 Aligned_cols=82 Identities=12% Similarity=-0.007 Sum_probs=48.7
Q ss_pred CCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCCc
Q 021467 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKANQ 105 (312)
Q Consensus 32 ~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~~ 105 (312)
+.+||=.|.+.| ..+.+.+.....+|+.+|.+.+.++...+.....+ .++.++.+|+.+..-.. ......+.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 467887776543 22222223344589999998877776655554322 24778899998743211 11112356
Q ss_pred eeEEEeccch
Q 021467 106 ADLVCCFQHL 115 (312)
Q Consensus 106 fD~V~~~~~l 115 (312)
.|+|+...+.
T Consensus 84 id~vi~~Ag~ 93 (287)
T PRK06194 84 VHLLFNNAGV 93 (287)
T ss_pred CCEEEECCCC
Confidence 8998887654
No 480
>PRK07831 short chain dehydrogenase; Provisional
Probab=48.25 E-value=1.1e+02 Score=26.75 Aligned_cols=85 Identities=16% Similarity=0.075 Sum_probs=50.4
Q ss_pred CCCEEEEECC-CC--CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhh-h---hhcC
Q 021467 31 PYVTVCDLYC-GA--GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQ-M---QEKA 103 (312)
Q Consensus 31 ~~~~VLDlGC-G~--G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~-~---~~~~ 103 (312)
.+.++|=.|+ |. |..+...+.....+|+.+|.+.+.++.+.+..+......++.++.+|+.+..-... + ....
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 95 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERL 95 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567888885 33 34333333334457999999988887776665431111247788999877432111 1 1123
Q ss_pred CceeEEEeccch
Q 021467 104 NQADLVCCFQHL 115 (312)
Q Consensus 104 ~~fD~V~~~~~l 115 (312)
+..|+++...+.
T Consensus 96 g~id~li~~ag~ 107 (262)
T PRK07831 96 GRLDVLVNNAGL 107 (262)
T ss_pred CCCCEEEECCCC
Confidence 578988876653
No 481
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=48.04 E-value=23 Score=26.42 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=25.9
Q ss_pred CceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEecChhHH
Q 021467 104 NQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGITPDSSTI 152 (312)
Q Consensus 104 ~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~p~~~~l 152 (312)
..+|+++.... ..| -...|..+...++-||.+++.+|+.+.+
T Consensus 10 ~e~~~~i~d~~--~g~-----~pnal~a~~gtv~gGGllill~p~~~~w 51 (92)
T PF08351_consen 10 QEFDLLIFDAF--EGF-----DPNALAALAGTVRGGGLLILLLPPWESW 51 (92)
T ss_dssp --BSSEEEE-S--S--------HHHHHHHHTTB-TT-EEEEEES-GGGT
T ss_pred CccCEEEEEcc--CCC-----CHHHHHHHhcceecCeEEEEEcCCHHHh
Confidence 56887776552 111 3567888999999999999999987544
No 482
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=47.74 E-value=1.6e+02 Score=25.51 Aligned_cols=82 Identities=10% Similarity=-0.015 Sum_probs=50.4
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~ 104 (312)
++.+||=.|++.| ..+.+.+.....+|+.++-+++.++...+..+..+ .++.++.+|+.+..-.. .....-+
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 87 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEHG 87 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 5678998897654 22223222344589999999887776666554432 23778899987743211 1111235
Q ss_pred ceeEEEeccc
Q 021467 105 QADLVCCFQH 114 (312)
Q Consensus 105 ~fD~V~~~~~ 114 (312)
+.|.|+...+
T Consensus 88 ~id~vi~~ag 97 (256)
T PRK06124 88 RLDILVNNVG 97 (256)
T ss_pred CCCEEEECCC
Confidence 7888877654
No 483
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.52 E-value=1e+02 Score=27.19 Aligned_cols=77 Identities=8% Similarity=-0.110 Sum_probs=46.2
Q ss_pred CCCEEEEECCCCCccHHHHHHc---CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh-----hhhhhc
Q 021467 31 PYVTVCDLYCGAGVDVDKWETA---LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-----TQMQEK 102 (312)
Q Consensus 31 ~~~~VLDlGCG~G~~l~~~~~~---~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~-----~~~~~~ 102 (312)
....||=.||..||.-..+++. .+..|++.--+-+-..+..... + +.....|+.++.-. .....+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~---g----l~~~kLDV~~~~~V~~v~~evr~~~ 78 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQF---G----LKPYKLDVSKPEEVVTVSGEVRANP 78 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhh---C----CeeEEeccCChHHHHHHHHHHhhCC
Confidence 4568999999999866555432 4458888766654444333222 2 55667787764321 112236
Q ss_pred CCceeEEEeccc
Q 021467 103 ANQADLVCCFQH 114 (312)
Q Consensus 103 ~~~fD~V~~~~~ 114 (312)
+++.|+.+.+..
T Consensus 79 ~Gkld~L~NNAG 90 (289)
T KOG1209|consen 79 DGKLDLLYNNAG 90 (289)
T ss_pred CCceEEEEcCCC
Confidence 788898776543
No 484
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=47.37 E-value=1.2e+02 Score=27.30 Aligned_cols=90 Identities=18% Similarity=0.065 Sum_probs=53.7
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
..++.+||=.|+|. |..+..+++....++++++.+++..+.+++ +.. .. ..+.... . ....+|
T Consensus 153 ~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~-------~~-~~~~~~~-~------~~~~~d 216 (319)
T cd08242 153 ITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LGV-------ET-VLPDEAE-S------EGGGFD 216 (319)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCC-------cE-EeCcccc-c------cCCCCC
Confidence 34678888887642 223334444445579999999988887765 211 11 0111111 1 345699
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEE
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~ 144 (312)
+|+.... ....+..+.+.|+++|.++.
T Consensus 217 ~vid~~g----------~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 217 VVVEATG----------SPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EEEECCC----------ChHHHHHHHHHhhcCCEEEE
Confidence 8875431 12346667778999999986
No 485
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=47.29 E-value=1.5e+02 Score=26.93 Aligned_cols=98 Identities=17% Similarity=0.195 Sum_probs=55.9
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCcee
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQAD 107 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD 107 (312)
..++.+||=.|||. |..+..+++....+++.++.+++.++.+++ +.. ..++ +.....+...+.. ...+|
T Consensus 161 ~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~-~g~------~~~i--~~~~~~~~~~~~~-~~~~d 230 (333)
T cd08296 161 AKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK-LGA------HHYI--DTSKEDVAEALQE-LGGAK 230 (333)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH-cCC------cEEe--cCCCccHHHHHHh-cCCCC
Confidence 34678999999653 333344445545589999999887777743 211 1111 2222222222221 13588
Q ss_pred EEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 108 LVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 108 ~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
+|+.... ....+..+.+.|+++|.++...
T Consensus 231 ~vi~~~g----------~~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 231 LILATAP----------NAKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred EEEECCC----------chHHHHHHHHHcccCCEEEEEe
Confidence 8875321 1235666778999999998653
No 486
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=46.97 E-value=2.3e+02 Score=25.82 Aligned_cols=103 Identities=17% Similarity=0.109 Sum_probs=61.5
Q ss_pred HHHHHHh--cCCCCEEEEEC--CCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh
Q 021467 22 TALIKIY--SHPYVTVCDLY--CGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET 97 (312)
Q Consensus 22 ~~li~~~--~~~~~~VLDlG--CG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~ 97 (312)
..++... ++++.+||--. .|-|-.+..|++....++++.-.+.+-.+.|++.-... .+ |....++.+
T Consensus 135 y~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h----~I-----~y~~eD~v~ 205 (336)
T KOG1197|consen 135 YMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEH----PI-----DYSTEDYVD 205 (336)
T ss_pred HHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcc----ee-----eccchhHHH
Confidence 3444444 34888877554 35566777888887778999888877777666654322 13 333333332
Q ss_pred hhhh--cCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEE
Q 021467 98 QMQE--KANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLG 144 (312)
Q Consensus 98 ~~~~--~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~ 144 (312)
.... .....|++.-.-.. ..+..-..+|||+|.++-
T Consensus 206 ~V~kiTngKGVd~vyDsvG~-----------dt~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 206 EVKKITNGKGVDAVYDSVGK-----------DTFAKSLAALKPMGKMVS 243 (336)
T ss_pred HHHhccCCCCceeeeccccc-----------hhhHHHHHHhccCceEEE
Confidence 2211 13567887644322 235555679999999874
No 487
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=46.80 E-value=1.6e+02 Score=27.93 Aligned_cols=108 Identities=16% Similarity=0.113 Sum_probs=56.6
Q ss_pred cCCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467 29 SHPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (312)
Q Consensus 29 ~~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~ 104 (312)
..++.+||=.|+|. |..+..+++. +...++.+|.+++-++.|++. + +..+... ...++...+.. ...
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----G----a~~v~~~-~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----G----CETVDLS-KDATLPEQIEQILGEP 253 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----C----CeEEecC-CcccHHHHHHHHcCCC
Confidence 34677887788764 2233344444 554577788888777777653 2 2211110 11122111111 224
Q ss_pred ceeEEEeccchh---hhcCC-HHHHHHHHHHHHhccCCCcEEEEE
Q 021467 105 QADLVCCFQHLQ---MCFET-EERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 105 ~fD~V~~~~~lh---~~~~~-~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
.+|+|+-.-.-. ++.+- ..+....+....+++++||.++..
T Consensus 254 g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred CCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEe
Confidence 689887544311 00000 011224677788899999999876
No 488
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=46.80 E-value=1.1e+02 Score=27.86 Aligned_cols=88 Identities=14% Similarity=0.098 Sum_probs=55.8
Q ss_pred cCCCCEEEEECCCCCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhhcCCceeE
Q 021467 29 SHPYVTVCDLYCGAGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQEKANQADL 108 (312)
Q Consensus 29 ~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~~~~~fD~ 108 (312)
+.+++...|+|...||-...+.+.+. .|++||-.+-+ ...-..+ .++-...|-+.... .....|-
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma-----~sL~dtg---~v~h~r~DGfk~~P------~r~~idW 273 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMA-----QSLMDTG---QVTHLREDGFKFRP------TRSNIDW 273 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcce-EEEEeccchhh-----hhhhccc---ceeeeeccCccccc------CCCCCce
Confidence 44889999999999998888877665 89999976421 1122222 26666666655322 2467888
Q ss_pred EEeccchhhhcCCHHHHHHHHHHHHhccCCC
Q 021467 109 VCCFQHLQMCFETEERARRLLQNVSSLLKPG 139 (312)
Q Consensus 109 V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpG 139 (312)
.+|-. .++....-.-+..+|..|
T Consensus 274 mVCDm--------VEkP~rv~~li~~Wl~nG 296 (358)
T COG2933 274 MVCDM--------VEKPARVAALIAKWLVNG 296 (358)
T ss_pred EEeeh--------hcCcHHHHHHHHHHHHcc
Confidence 87765 233444445555666544
No 489
>PRK14851 hypothetical protein; Provisional
Probab=46.78 E-value=1.2e+02 Score=31.32 Aligned_cols=79 Identities=14% Similarity=-0.018 Sum_probs=48.2
Q ss_pred CCCEEEEECCC-CCcc-HHHHHHcCCCeEEEEeCChHHH-------------------HHHHHHHHhcCCCceEEEEEcC
Q 021467 31 PYVTVCDLYCG-AGVD-VDKWETALIANYIGIDVATSGI-------------------GEARDTWENQRKNFIAEFFEAD 89 (312)
Q Consensus 31 ~~~~VLDlGCG-~G~~-l~~~~~~~~~~v~giDis~~~i-------------------~~a~~r~~~~~~~~~~~f~~~D 89 (312)
.+.+|+=+||| -|.. +..++..+..+++-+|.+...+ +.++++....+...+++.+...
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~ 121 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAG 121 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 46899999998 5654 4455556888899888644333 2334444444444556677666
Q ss_pred CCCCchhhhhhhcCCceeEEEecc
Q 021467 90 PCAENFETQMQEKANQADLVCCFQ 113 (312)
Q Consensus 90 ~~~~~~~~~~~~~~~~fD~V~~~~ 113 (312)
+...+....+ ..+|+|+...
T Consensus 122 i~~~n~~~~l----~~~DvVid~~ 141 (679)
T PRK14851 122 INADNMDAFL----DGVDVVLDGL 141 (679)
T ss_pred CChHHHHHHH----hCCCEEEECC
Confidence 6554432222 4689988543
No 490
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=46.75 E-value=1.1e+02 Score=27.87 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=55.2
Q ss_pred CCCCEEEEECCCC-CccHHHHHHc-CCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhh--hcCCc
Q 021467 30 HPYVTVCDLYCGA-GVDVDKWETA-LIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQ--EKANQ 105 (312)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~~~~~~-~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~--~~~~~ 105 (312)
.++.+||-.|+|. |..+..+++. +...+++++.+++..+.+++.-. -.+ .|....++...+. .....
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~-------~~~--~~~~~~~~~~~~~~~~~~~~ 232 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGA-------TRA--VNVAKEDLRDVMAELGMTEG 232 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC-------cEE--ecCccccHHHHHHHhcCCCC
Confidence 3677888887753 3344455554 43368888888877666554311 011 1222222222221 12356
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGIT 146 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~~ 146 (312)
+|+|+.... ....+..+.+.|+++|.++...
T Consensus 233 ~d~v~d~~g----------~~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 233 FDVGLEMSG----------APSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred CCEEEECCC----------CHHHHHHHHHHHhcCCEEEEEe
Confidence 899875321 1234666778999999998774
No 491
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=46.27 E-value=95 Score=28.26 Aligned_cols=97 Identities=19% Similarity=0.130 Sum_probs=52.5
Q ss_pred CEEEEECCCCCc-cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhc-CC----C------ceEEEEEcCCCCCchhhhhh
Q 021467 33 VTVCDLYCGAGV-DVDKWETALIANYIGIDVATSGIGEARDTWENQ-RK----N------FIAEFFEADPCAENFETQMQ 100 (312)
Q Consensus 33 ~~VLDlGCG~G~-~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~-~~----~------~~~~f~~~D~~~~~~~~~~~ 100 (312)
.+|.=||+|.-| .+...+.....+|+++|.+++.++.++++.... +. . .++.+ ..| ..+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~-----~~~--- 75 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAG-----LAA--- 75 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCC-----HHH---
Confidence 467788998633 333333333348999999999998887653211 00 0 00111 111 110
Q ss_pred hcCCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 101 EKANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 101 ~~~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
.-...|+|+..- .+..+....++..+...++++. ++.+
T Consensus 76 -~~~~aDlVi~av-----~~~~~~~~~v~~~l~~~~~~~~-ii~s 113 (311)
T PRK06130 76 -AVSGADLVIEAV-----PEKLELKRDVFARLDGLCDPDT-IFAT 113 (311)
T ss_pred -HhccCCEEEEec-----cCcHHHHHHHHHHHHHhCCCCc-EEEE
Confidence 124578877543 1223346677888888777654 4444
No 492
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=46.13 E-value=1.7e+02 Score=26.82 Aligned_cols=97 Identities=18% Similarity=0.138 Sum_probs=55.3
Q ss_pred CCCCEEEEECCCC-CccHHHHHHcCCC-eEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCCc
Q 021467 30 HPYVTVCDLYCGA-GVDVDKWETALIA-NYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KANQ 105 (312)
Q Consensus 30 ~~~~~VLDlGCG~-G~~l~~~~~~~~~-~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~~ 105 (312)
.++.+||=.|+|. |..+..+++.... .+++++.+++..+.+++ + + +... .|..+.++...+.. ..+.
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~-~---g----a~~~-i~~~~~~~~~~l~~~~~~~~ 241 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE-L---G----ATIV-LDPTEVDVVAEVRKLTGGGG 241 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h---C----CCEE-ECCCccCHHHHHHHHhCCCC
Confidence 4678888888642 2233444444444 89999999888777754 2 1 1111 12222223222211 2245
Q ss_pred eeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 106 ADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 106 fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
+|+|+-...- ...+..+.+.|++||.++..
T Consensus 242 ~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 271 (351)
T cd08233 242 VDVSFDCAGV----------QATLDTAIDALRPRGTAVNV 271 (351)
T ss_pred CCEEEECCCC----------HHHHHHHHHhccCCCEEEEE
Confidence 9998754310 12466777899999998865
No 493
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=45.97 E-value=1.6e+02 Score=25.73 Aligned_cols=83 Identities=11% Similarity=0.022 Sum_probs=51.6
Q ss_pred CCCEEEEECCCCCc--cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCC
Q 021467 31 PYVTVCDLYCGAGV--DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G~--~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~ 104 (312)
.+.++|=.|++.|- .+.+.+.....+++.++-+++.++.+.+..+..+ .++.++.+|+.+..-.. .....-+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 45789999987652 2223233344589999999888877766665432 23778899997743211 1111235
Q ss_pred ceeEEEeccch
Q 021467 105 QADLVCCFQHL 115 (312)
Q Consensus 105 ~fD~V~~~~~l 115 (312)
+.|+++...+.
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 78988876653
No 494
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=45.93 E-value=18 Score=30.73 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEecCh
Q 021467 123 ERARRLLQNVSSLLKPGGYFLGITPDS 149 (312)
Q Consensus 123 ~~~~~~l~~i~~~LkpGG~~i~~~p~~ 149 (312)
+.....+.++.++|||||.+++.+.+.
T Consensus 33 ~~~~~~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 33 EWMEEWLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHHHHHHHhhcCCCeeEEEEecch
Confidence 446888999999999999999886666
No 495
>PRK07035 short chain dehydrogenase; Provisional
Probab=45.87 E-value=1.9e+02 Score=24.94 Aligned_cols=82 Identities=12% Similarity=-0.011 Sum_probs=49.3
Q ss_pred CCCEEEEECCCCCc--cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCC
Q 021467 31 PYVTVCDLYCGAGV--DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G~--~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~ 104 (312)
.+.+||=.|++.|- .+...+.....+|+++|.+...++...+.....+ .++.++.+|+.+..-.. .....-+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 35678888987662 2222222334599999999887776666554332 23677888987643211 1111235
Q ss_pred ceeEEEeccc
Q 021467 105 QADLVCCFQH 114 (312)
Q Consensus 105 ~fD~V~~~~~ 114 (312)
+.|+++...+
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 6898886654
No 496
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=45.86 E-value=2.1e+02 Score=25.17 Aligned_cols=97 Identities=19% Similarity=0.140 Sum_probs=54.6
Q ss_pred cCCCCEEEEECCC--CCccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhhhh--cCC
Q 021467 29 SHPYVTVCDLYCG--AGVDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQMQE--KAN 104 (312)
Q Consensus 29 ~~~~~~VLDlGCG--~G~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~~~--~~~ 104 (312)
..++.+||-.||. .|..+..+++.....+++++.+++..+.+++. +. -..+..+ ...+...+.. ...
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~---~~~~~~~--~~~~~~~i~~~~~~~ 207 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARAL----GA---DHVIDYR--DPDLRERVKALTGGR 207 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHc----CC---ceeeecC--CccHHHHHHHHcCCC
Confidence 3467899999983 33344444555555899999998877776432 11 0111111 1122111110 234
Q ss_pred ceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 105 QADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 105 ~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
.+|+++....- ..+..+.+.++++|.++..
T Consensus 208 ~~d~v~~~~g~-----------~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 208 GVDVVYDPVGG-----------DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred CcEEEEECccH-----------HHHHHHHHhhccCCEEEEE
Confidence 68988754321 1345566788999998755
No 497
>PRK06172 short chain dehydrogenase; Provisional
Probab=45.74 E-value=1.3e+02 Score=25.98 Aligned_cols=82 Identities=13% Similarity=-0.108 Sum_probs=49.5
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchh-h---hhhhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFE-T---QMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~-~---~~~~~~~ 104 (312)
.+.+||=.|++.| ..+.+.+.....+|+.++-+++.++.+.+.....+ .++.++.+|+.+..-. . ......+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g 83 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAYG 83 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 3568899997654 22222222344589999999887766655554332 2378889999874311 1 1111235
Q ss_pred ceeEEEeccc
Q 021467 105 QADLVCCFQH 114 (312)
Q Consensus 105 ~fD~V~~~~~ 114 (312)
+.|+|+...+
T Consensus 84 ~id~li~~ag 93 (253)
T PRK06172 84 RLDYAFNNAG 93 (253)
T ss_pred CCCEEEECCC
Confidence 7898887654
No 498
>PRK12742 oxidoreductase; Provisional
Probab=45.74 E-value=1.9e+02 Score=24.55 Aligned_cols=106 Identities=12% Similarity=0.033 Sum_probs=52.9
Q ss_pred CCEEEEECCCCC--ccHHHHHHcCCCeEEEEeC-ChHHHHHHHHHHHhcCCCceEEEEEcCCCCCch-hhhhhhcCCcee
Q 021467 32 YVTVCDLYCGAG--VDVDKWETALIANYIGIDV-ATSGIGEARDTWENQRKNFIAEFFEADPCAENF-ETQMQEKANQAD 107 (312)
Q Consensus 32 ~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDi-s~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~-~~~~~~~~~~fD 107 (312)
+.+||=.|++.| ..+.+.+.....+++.++. +++.++..... .+ +.++..|+.+..- ...+. ..+..|
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~---~~----~~~~~~D~~~~~~~~~~~~-~~~~id 77 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQE---TG----ATAVQTDSADRDAVIDVVR-KSGALD 77 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHH---hC----CeEEecCCCCHHHHHHHHH-HhCCCc
Confidence 568898887655 2222222233447777655 34433332222 12 4567788866432 11121 235689
Q ss_pred EEEeccchhhh----cCCHHHHHH-----------HHHHHHhccCCCcEEEEE
Q 021467 108 LVCCFQHLQMC----FETEERARR-----------LLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 108 ~V~~~~~lh~~----~~~~~~~~~-----------~l~~i~~~LkpGG~~i~~ 145 (312)
+++...+.... -.+.++.+. +++.+.+.++.+|.++.+
T Consensus 78 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 130 (237)
T PRK12742 78 ILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIII 130 (237)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 88876543210 012222222 234555666777877765
No 499
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=45.25 E-value=84 Score=29.03 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=60.0
Q ss_pred CEEEEECCCCCc--cHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhhhh---hh-----c
Q 021467 33 VTVCDLYCGAGV--DVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFETQM---QE-----K 102 (312)
Q Consensus 33 ~~VLDlGCG~G~--~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~~~---~~-----~ 102 (312)
.+|-=||.|+=| .+...+. .+-.|+..|+++++++.+.......-.. .++ .+-+........+ .. .
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~~~~~~~~~i~~~l~k-~~~--~g~l~~~~~~~~l~~i~~~~~~~~ 79 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPEALERALAYIEKNLEK-LVE--KGKLTEEEADAALARITPTTDLAA 79 (307)
T ss_pred cEEEEEcccchhHHHHHHHhh-cCCceEEEeCCHHHHHHHHHHHHHHHHH-HHh--cCCCChhhHHHHHhhccccCchhH
Confidence 357778888622 3333333 4458999999999999888766442000 000 0111111100000 00 0
Q ss_pred CCceeEEEeccchhhhcCCHHHHHHHHHHHHhccCCCcEEEEE
Q 021467 103 ANQADLVCCFQHLQMCFETEERARRLLQNVSSLLKPGGYFLGI 145 (312)
Q Consensus 103 ~~~fD~V~~~~~lh~~~~~~~~~~~~l~~i~~~LkpGG~~i~~ 145 (312)
-...|+|+ .-.+++.+-.+++++.+-.+++|+-+|--.
T Consensus 80 l~~~DlVI-----EAv~E~levK~~vf~~l~~~~~~~aIlASN 117 (307)
T COG1250 80 LKDADLVI-----EAVVEDLELKKQVFAELEALAKPDAILASN 117 (307)
T ss_pred hccCCEEE-----EeccccHHHHHHHHHHHHhhcCCCcEEeec
Confidence 13456554 335788999999999999999998776543
No 500
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=45.10 E-value=1.4e+02 Score=25.83 Aligned_cols=83 Identities=10% Similarity=-0.004 Sum_probs=50.0
Q ss_pred CCCEEEEECCCCC--ccHHHHHHcCCCeEEEEeCChHHHHHHHHHHHhcCCCceEEEEEcCCCCCchhh----hhhhcCC
Q 021467 31 PYVTVCDLYCGAG--VDVDKWETALIANYIGIDVATSGIGEARDTWENQRKNFIAEFFEADPCAENFET----QMQEKAN 104 (312)
Q Consensus 31 ~~~~VLDlGCG~G--~~l~~~~~~~~~~v~giDis~~~i~~a~~r~~~~~~~~~~~f~~~D~~~~~~~~----~~~~~~~ 104 (312)
.+.+||=.|++.| ..+.+.+.....+|+++|-+++.++...+..+..+ .++.++.+|+.+..-.. .....-+
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 86 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEIG 86 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4578998886443 22222222234589999999887776666655432 34778889998743211 1111235
Q ss_pred ceeEEEeccch
Q 021467 105 QADLVCCFQHL 115 (312)
Q Consensus 105 ~fD~V~~~~~l 115 (312)
..|+|+...+.
T Consensus 87 ~~d~li~~ag~ 97 (255)
T PRK07523 87 PIDILVNNAGM 97 (255)
T ss_pred CCCEEEECCCC
Confidence 68988876653
Done!