Query 021468
Match_columns 312
No_of_seqs 183 out of 2234
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:11:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 1.8E-40 3.8E-45 298.5 24.2 264 1-268 207-474 (493)
2 TIGR01130 ER_PDI_fam protein d 100.0 1.2E-33 2.7E-38 264.0 28.1 267 2-273 184-460 (462)
3 PTZ00102 disulphide isomerase; 100.0 1.8E-33 3.9E-38 263.9 28.0 257 2-269 204-467 (477)
4 KOG0191 Thioredoxin/protein di 99.9 1.6E-26 3.4E-31 210.2 19.2 215 38-270 37-255 (383)
5 TIGR02187 GlrX_arch Glutaredox 99.9 1.4E-22 2.9E-27 170.0 17.0 187 50-265 21-214 (215)
6 cd03006 PDI_a_EFP1_N PDIa fami 99.8 8.5E-20 1.8E-24 136.2 11.1 101 158-263 8-113 (113)
7 KOG0910 Thioredoxin-like prote 99.8 1.3E-19 2.9E-24 137.7 8.2 104 160-268 44-149 (150)
8 PF00085 Thioredoxin: Thioredo 99.8 3.1E-19 6.8E-24 132.0 10.0 101 161-266 1-103 (103)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 3.5E-19 7.6E-24 131.4 10.0 97 160-262 2-100 (101)
10 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 3.3E-19 7.1E-24 132.3 8.9 100 160-263 2-104 (104)
11 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 9.9E-19 2.2E-23 129.6 10.7 103 160-263 1-104 (104)
12 cd03065 PDI_b_Calsequestrin_N 99.8 1.6E-18 3.4E-23 130.2 10.0 106 158-267 8-119 (120)
13 cd02996 PDI_a_ERp44 PDIa famil 99.8 1.3E-18 2.9E-23 129.9 9.7 101 160-263 2-108 (108)
14 KOG0190 Protein disulfide isom 99.8 1.2E-17 2.6E-22 151.3 16.0 209 29-270 23-238 (493)
15 cd03002 PDI_a_MPD1_like PDI fa 99.8 5.7E-18 1.2E-22 126.7 10.0 101 161-263 2-108 (109)
16 PRK09381 trxA thioredoxin; Pro 99.7 1.5E-17 3.3E-22 124.4 11.0 104 159-267 3-108 (109)
17 cd02994 PDI_a_TMX PDIa family, 99.7 1.1E-17 2.3E-22 123.4 9.9 98 160-265 2-101 (101)
18 COG3118 Thioredoxin domain-con 99.7 8E-18 1.7E-22 141.5 9.5 106 159-269 23-132 (304)
19 cd03001 PDI_a_P5 PDIa family, 99.7 1.5E-17 3.2E-22 123.0 9.8 99 161-263 2-102 (103)
20 PTZ00102 disulphide isomerase; 99.7 1.6E-16 3.6E-21 149.2 19.1 226 31-272 32-343 (477)
21 cd02993 PDI_a_APS_reductase PD 99.7 3.5E-17 7.5E-22 122.3 9.8 101 160-263 2-109 (109)
22 cd02963 TRX_DnaJ TRX domain, D 99.7 2E-17 4.4E-22 123.9 8.2 99 163-265 8-110 (111)
23 cd03005 PDI_a_ERp46 PDIa famil 99.7 3.4E-17 7.4E-22 120.9 9.3 98 161-263 2-102 (102)
24 cd03003 PDI_a_ERdj5_N PDIa fam 99.7 3.4E-17 7.3E-22 120.7 9.2 100 31-136 1-101 (101)
25 cd02998 PDI_a_ERp38 PDIa famil 99.7 7.3E-17 1.6E-21 119.7 10.5 101 161-263 2-105 (105)
26 TIGR01126 pdi_dom protein disu 99.7 5.9E-17 1.3E-21 119.5 9.6 100 164-267 1-102 (102)
27 cd02956 ybbN ybbN protein fami 99.7 6.4E-17 1.4E-21 118.1 9.7 92 168-264 2-96 (96)
28 TIGR01130 ER_PDI_fam protein d 99.7 4.5E-16 9.7E-21 145.6 17.1 216 32-276 2-224 (462)
29 PHA02278 thioredoxin-like prot 99.7 3.8E-17 8.1E-22 120.0 7.7 90 167-262 5-100 (103)
30 cd03006 PDI_a_EFP1_N PDIa fami 99.7 7.3E-17 1.6E-21 120.4 9.4 101 30-136 8-113 (113)
31 PTZ00443 Thioredoxin domain-co 99.7 5E-17 1.1E-21 135.3 9.4 106 158-268 29-140 (224)
32 cd02954 DIM1 Dim1 family; Dim1 99.7 2.9E-17 6.2E-22 121.5 6.1 77 167-245 3-82 (114)
33 cd02999 PDI_a_ERp44_like PDIa 99.7 1E-16 2.2E-21 117.6 8.2 82 175-263 16-100 (100)
34 KOG0191 Thioredoxin/protein di 99.7 3.5E-16 7.7E-21 142.4 12.5 228 7-244 112-357 (383)
35 cd02997 PDI_a_PDIR PDIa family 99.7 3E-16 6.4E-21 116.2 9.7 99 161-263 2-104 (104)
36 PRK10996 thioredoxin 2; Provis 99.7 3.8E-16 8.3E-21 121.7 9.9 104 158-267 34-139 (139)
37 cd03007 PDI_a_ERp29_N PDIa fam 99.7 2.8E-16 6.1E-21 116.6 8.3 98 161-266 3-115 (116)
38 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 3.1E-16 6.7E-21 116.2 8.3 101 31-136 1-104 (104)
39 cd02996 PDI_a_ERp44 PDIa famil 99.7 3.6E-16 7.9E-21 116.7 8.7 100 32-136 2-108 (108)
40 cd02985 TRX_CDSP32 TRX family, 99.7 4.8E-16 1E-20 114.9 8.6 93 166-265 3-101 (103)
41 PF00085 Thioredoxin: Thioredo 99.7 4.3E-16 9.3E-21 115.0 8.4 101 33-139 1-103 (103)
42 TIGR01068 thioredoxin thioredo 99.7 6.9E-16 1.5E-20 113.5 9.3 98 165-267 2-101 (101)
43 cd02965 HyaE HyaE family; HyaE 99.6 1.1E-15 2.3E-20 112.3 9.6 94 161-260 12-109 (111)
44 cd02948 TRX_NDPK TRX domain, T 99.6 8.3E-16 1.8E-20 113.4 8.7 96 164-265 5-101 (102)
45 KOG4277 Uncharacterized conser 99.6 4.1E-15 8.9E-20 124.3 13.4 183 46-266 41-230 (468)
46 cd02992 PDI_a_QSOX PDIa family 99.6 2.1E-15 4.6E-20 113.4 10.2 100 160-259 2-108 (114)
47 cd03065 PDI_b_Calsequestrin_N 99.6 1.1E-15 2.5E-20 114.8 8.7 103 31-140 9-119 (120)
48 TIGR00424 APS_reduc 5'-adenyly 99.6 1.6E-15 3.4E-20 138.5 11.1 106 158-266 350-462 (463)
49 cd02957 Phd_like Phosducin (Ph 99.6 1.3E-15 2.9E-20 114.5 8.8 99 159-263 4-112 (113)
50 PLN02309 5'-adenylylsulfate re 99.6 1.6E-15 3.4E-20 138.4 10.7 106 158-266 344-456 (457)
51 cd03007 PDI_a_ERp29_N PDIa fam 99.6 1.4E-15 3E-20 112.8 8.4 104 33-139 3-115 (116)
52 cd03000 PDI_a_TMX3 PDIa family 99.6 2.7E-15 5.9E-20 111.1 10.0 94 167-266 7-103 (104)
53 cd02950 TxlA TRX-like protein 99.6 6.7E-15 1.5E-19 114.9 12.6 98 167-270 11-113 (142)
54 cd02962 TMX2 TMX2 family; comp 99.6 1.8E-15 3.9E-20 118.6 9.2 87 158-245 27-122 (152)
55 PF13848 Thioredoxin_6: Thiore 99.6 5E-15 1.1E-19 121.2 11.3 135 1-138 46-184 (184)
56 cd03002 PDI_a_MPD1_like PDI fa 99.6 3.1E-15 6.6E-20 111.8 9.0 102 33-137 2-109 (109)
57 cd02989 Phd_like_TxnDC9 Phosdu 99.6 3.3E-15 7.2E-20 112.0 9.1 101 159-263 4-112 (113)
58 KOG0907 Thioredoxin [Posttrans 99.6 3.2E-15 6.9E-20 109.8 8.7 85 175-266 19-105 (106)
59 cd03001 PDI_a_P5 PDIa family, 99.6 4.5E-15 9.8E-20 109.7 8.9 99 33-136 2-102 (103)
60 cd02987 Phd_like_Phd Phosducin 99.6 5E-15 1.1E-19 119.5 9.7 106 158-266 61-174 (175)
61 cd02961 PDI_a_family Protein D 99.6 4E-15 8.6E-20 109.1 8.3 98 163-263 2-101 (101)
62 KOG0912 Thiol-disulfide isomer 99.6 3.2E-14 7E-19 119.1 13.2 202 36-269 1-210 (375)
63 cd02994 PDI_a_TMX PDIa family, 99.6 1.8E-14 4E-19 106.0 9.5 98 32-138 2-101 (101)
64 PLN00410 U5 snRNP protein, DIM 99.6 1.6E-14 3.5E-19 111.0 8.8 97 166-267 11-120 (142)
65 KOG0908 Thioredoxin-like prote 99.6 1.8E-14 3.9E-19 117.5 9.4 106 161-273 3-112 (288)
66 cd02949 TRX_NTR TRX domain, no 99.5 2.5E-14 5.3E-19 104.5 8.6 91 169-264 5-97 (97)
67 KOG0910 Thioredoxin-like prote 99.5 2.1E-14 4.5E-19 109.4 8.3 105 31-141 43-149 (150)
68 cd03005 PDI_a_ERp46 PDIa famil 99.5 1.9E-14 4.1E-19 106.1 7.7 97 33-136 2-102 (102)
69 TIGR01126 pdi_dom protein disu 99.5 2.4E-14 5.2E-19 105.4 8.2 98 36-139 1-101 (102)
70 cd02993 PDI_a_APS_reductase PD 99.5 2.5E-14 5.4E-19 106.8 8.3 101 32-136 2-109 (109)
71 cd02984 TRX_PICOT TRX domain, 99.5 2.3E-14 4.9E-19 104.7 7.9 92 166-263 2-96 (97)
72 cd02988 Phd_like_VIAF Phosduci 99.5 2.5E-14 5.5E-19 116.9 8.7 105 158-266 81-191 (192)
73 cd02953 DsbDgamma DsbD gamma f 99.5 4.1E-14 8.9E-19 104.8 7.9 91 167-263 2-103 (104)
74 cd02986 DLP Dim1 family, Dim1- 99.5 4.5E-14 9.7E-19 103.6 7.0 76 167-244 3-81 (114)
75 PRK09381 trxA thioredoxin; Pro 99.5 1.8E-13 4E-18 102.2 10.3 105 30-140 2-108 (109)
76 KOG4277 Uncharacterized conser 99.5 2.7E-14 5.9E-19 119.4 6.1 95 176-274 42-139 (468)
77 PTZ00051 thioredoxin; Provisio 99.5 9.4E-14 2E-18 101.6 8.2 91 161-259 2-95 (98)
78 cd02998 PDI_a_ERp38 PDIa famil 99.5 1.5E-13 3.3E-18 101.7 9.2 100 33-136 2-105 (105)
79 PTZ00443 Thioredoxin domain-co 99.5 9.6E-14 2.1E-18 115.7 8.8 106 30-141 29-140 (224)
80 cd02975 PfPDO_like_N Pyrococcu 99.5 1.5E-13 3.3E-18 103.0 8.7 89 175-267 20-110 (113)
81 cd02995 PDI_a_PDI_a'_C PDIa fa 99.5 2.1E-13 4.6E-18 100.8 9.3 98 33-136 2-104 (104)
82 PF13848 Thioredoxin_6: Thiore 99.5 2.3E-12 5E-17 105.4 16.4 173 63-265 6-184 (184)
83 cd02997 PDI_a_PDIR PDIa family 99.5 1.7E-13 3.7E-18 101.3 8.5 100 33-136 2-104 (104)
84 KOG1731 FAD-dependent sulfhydr 99.5 2.8E-13 6.1E-18 122.9 11.0 235 30-282 38-284 (606)
85 cd02999 PDI_a_ERp44_like PDIa 99.5 2.1E-13 4.6E-18 100.0 7.5 82 47-136 17-100 (100)
86 PRK10996 thioredoxin 2; Provis 99.4 4E-13 8.6E-18 104.6 8.9 103 31-139 35-138 (139)
87 cd02982 PDI_b'_family Protein 99.4 5E-13 1.1E-17 98.7 8.7 96 41-139 5-102 (103)
88 KOG0912 Thiol-disulfide isomer 99.4 1.4E-13 3.1E-18 115.3 6.1 105 165-272 2-111 (375)
89 cd02956 ybbN ybbN protein fami 99.4 6.2E-13 1.3E-17 96.9 8.8 92 40-137 2-96 (96)
90 cd02961 PDI_a_family Protein D 99.4 3.1E-13 6.8E-18 98.9 7.0 97 35-136 2-101 (101)
91 cd02963 TRX_DnaJ TRX domain, D 99.4 3.6E-13 7.8E-18 100.8 6.8 98 35-138 8-110 (111)
92 TIGR01295 PedC_BrcD bacterioci 99.4 6.5E-13 1.4E-17 100.8 8.2 96 161-264 8-121 (122)
93 PTZ00062 glutaredoxin; Provisi 99.4 1.3E-12 2.7E-17 107.3 10.2 160 39-243 7-178 (204)
94 TIGR00424 APS_reduc 5'-adenyly 99.4 9.3E-13 2E-17 120.4 10.2 107 29-139 349-462 (463)
95 cd02947 TRX_family TRX family; 99.4 1.4E-12 3E-17 93.7 8.8 89 168-263 2-92 (93)
96 PTZ00062 glutaredoxin; Provisi 99.4 1.1E-12 2.3E-17 107.7 8.9 91 165-268 5-95 (204)
97 cd02965 HyaE HyaE family; HyaE 99.4 1.4E-12 3.1E-17 95.8 8.5 97 31-133 10-109 (111)
98 COG3118 Thioredoxin domain-con 99.4 1.5E-12 3.3E-17 109.9 9.5 107 30-142 22-132 (304)
99 cd02950 TxlA TRX-like protein 99.4 3.9E-12 8.4E-17 99.4 10.0 102 39-143 11-113 (142)
100 TIGR01068 thioredoxin thioredo 99.4 2.9E-12 6.2E-17 94.0 8.3 97 37-139 2-100 (101)
101 cd03000 PDI_a_TMX3 PDIa family 99.4 4.2E-12 9E-17 94.0 9.1 93 39-139 7-103 (104)
102 PLN02309 5'-adenylylsulfate re 99.4 2.9E-12 6.2E-17 117.2 9.6 105 30-139 344-456 (457)
103 cd02982 PDI_b'_family Protein 99.4 3.9E-12 8.5E-17 93.8 8.6 84 177-266 12-102 (103)
104 cd02992 PDI_a_QSOX PDIa family 99.4 4.4E-12 9.6E-17 95.3 8.9 100 32-134 2-110 (114)
105 cd02951 SoxW SoxW family; SoxW 99.3 3.6E-12 7.8E-17 97.6 8.2 90 175-269 11-121 (125)
106 PHA02278 thioredoxin-like prot 99.3 3E-12 6.5E-17 94.0 6.7 94 39-135 5-100 (103)
107 cd02954 DIM1 Dim1 family; Dim1 99.3 3.1E-12 6.7E-17 94.7 6.3 74 40-118 4-80 (114)
108 cd02952 TRP14_like Human TRX-r 99.3 6.2E-12 1.3E-16 94.2 7.6 92 166-263 9-118 (119)
109 cd02948 TRX_NDPK TRX domain, T 99.3 8.3E-12 1.8E-16 92.0 7.2 94 37-138 6-101 (102)
110 cd02959 ERp19 Endoplasmic reti 99.3 4.7E-12 1E-16 95.5 5.8 91 174-264 16-110 (117)
111 cd02985 TRX_CDSP32 TRX family, 99.3 8E-12 1.7E-16 92.2 6.8 95 39-138 4-101 (103)
112 cd02989 Phd_like_TxnDC9 Phosdu 99.3 2.6E-11 5.7E-16 90.9 9.4 100 31-136 4-112 (113)
113 TIGR00411 redox_disulf_1 small 99.3 2.5E-11 5.3E-16 85.6 8.8 78 180-266 2-81 (82)
114 cd03072 PDI_b'_ERp44 PDIb' fam 99.3 2.6E-11 5.6E-16 90.4 8.9 107 33-143 1-111 (111)
115 cd02957 Phd_like Phosducin (Ph 99.3 2.2E-11 4.7E-16 91.5 8.4 82 30-118 3-88 (113)
116 cd02962 TMX2 TMX2 family; comp 99.3 1.8E-11 3.8E-16 96.1 8.1 83 31-118 28-120 (152)
117 PLN00410 U5 snRNP protein, DIM 99.3 2.3E-11 5E-16 93.6 8.3 102 39-144 12-124 (142)
118 cd02953 DsbDgamma DsbD gamma f 99.2 4E-11 8.6E-16 88.7 7.6 96 40-137 3-104 (104)
119 KOG1731 FAD-dependent sulfhydr 99.2 2E-11 4.3E-16 111.0 6.0 113 156-268 36-154 (606)
120 KOG0907 Thioredoxin [Posttrans 99.2 7.8E-11 1.7E-15 86.6 7.7 83 48-138 21-104 (106)
121 cd02984 TRX_PICOT TRX domain, 99.2 6.3E-11 1.4E-15 86.3 6.9 91 39-136 3-96 (97)
122 cd02975 PfPDO_like_N Pyrococcu 99.2 1.6E-10 3.5E-15 86.6 8.5 91 45-141 19-111 (113)
123 cd02986 DLP Dim1 family, Dim1- 99.2 2.4E-10 5.3E-15 84.0 8.7 90 47-141 13-112 (114)
124 PF01216 Calsequestrin: Calseq 99.1 3.5E-09 7.6E-14 91.1 16.2 213 31-277 34-257 (383)
125 cd02949 TRX_NTR TRX domain, no 99.1 2.6E-10 5.7E-15 83.1 8.2 86 46-137 11-97 (97)
126 TIGR03143 AhpF_homolog putativ 99.1 2.3E-09 4.9E-14 102.5 16.2 180 52-263 369-554 (555)
127 cd02987 Phd_like_Phd Phosducin 99.1 4.4E-10 9.4E-15 90.8 9.1 104 29-139 60-174 (175)
128 cd02947 TRX_family TRX family; 99.1 7.3E-10 1.6E-14 79.3 8.3 91 40-137 2-93 (93)
129 cd02983 P5_C P5 family, C-term 99.1 3.4E-09 7.3E-14 81.2 12.1 111 31-146 2-121 (130)
130 PTZ00051 thioredoxin; Provisio 99.1 4E-10 8.6E-15 82.3 6.7 88 38-133 8-96 (98)
131 TIGR00412 redox_disulf_2 small 99.1 4.7E-10 1E-14 77.7 6.2 73 181-263 2-75 (76)
132 PRK00293 dipZ thiol:disulfide 99.0 6.8E-10 1.5E-14 105.8 9.3 103 161-267 454-570 (571)
133 TIGR01295 PedC_BrcD bacterioci 99.0 1.1E-09 2.3E-14 83.2 7.3 102 31-137 6-121 (122)
134 PHA02125 thioredoxin-like prot 99.0 1.2E-09 2.6E-14 75.5 6.3 67 181-261 2-71 (75)
135 PRK14018 trifunctional thiored 99.0 2.5E-09 5.4E-14 99.4 9.7 89 173-265 52-171 (521)
136 TIGR02187 GlrX_arch Glutaredox 99.0 2.5E-09 5.5E-14 89.7 8.8 119 10-138 92-214 (215)
137 TIGR00411 redox_disulf_1 small 99.0 5.3E-09 1.2E-13 73.5 8.8 78 52-139 3-81 (82)
138 cd02951 SoxW SoxW family; SoxW 99.0 2.8E-09 6.1E-14 81.5 7.8 100 42-143 7-122 (125)
139 TIGR02738 TrbB type-F conjugat 99.0 5.7E-09 1.2E-13 82.2 9.6 86 177-266 50-152 (153)
140 cd03073 PDI_b'_ERp72_ERp57 PDI 98.9 3.8E-09 8.2E-14 78.6 7.9 102 33-140 1-111 (111)
141 PF13098 Thioredoxin_2: Thiore 98.9 6.9E-10 1.5E-14 83.1 4.0 84 175-263 3-112 (112)
142 KOG0908 Thioredoxin-like prote 98.9 4.2E-09 9.2E-14 86.4 8.5 100 35-142 6-108 (288)
143 TIGR02740 TraF-like TraF-like 98.9 4.2E-09 9.2E-14 91.0 8.6 89 176-268 165-265 (271)
144 PRK11509 hydrogenase-1 operon 98.9 1.6E-08 3.4E-13 76.7 9.6 102 164-270 22-127 (132)
145 cd02955 SSP411 TRX domain, SSP 98.9 1.4E-08 3E-13 77.0 9.2 70 173-244 11-94 (124)
146 cd02988 Phd_like_VIAF Phosduci 98.9 1E-08 2.2E-13 83.9 8.9 102 28-138 79-190 (192)
147 PRK11509 hydrogenase-1 operon 98.9 1.9E-08 4.2E-13 76.2 9.2 105 32-143 18-127 (132)
148 PRK03147 thiol-disulfide oxido 98.8 3.5E-08 7.6E-13 79.8 10.8 103 160-266 45-171 (173)
149 cd02973 TRX_GRX_like Thioredox 98.8 9.9E-09 2.2E-13 69.2 6.0 55 180-237 2-58 (67)
150 cd03009 TryX_like_TryX_NRX Try 98.8 1.6E-08 3.4E-13 78.0 7.6 68 176-243 17-111 (131)
151 PF13905 Thioredoxin_8: Thiore 98.8 1.7E-08 3.6E-13 73.2 7.3 65 177-241 1-92 (95)
152 cd02964 TryX_like_family Trypa 98.8 1.7E-08 3.6E-13 78.0 7.7 68 176-243 16-111 (132)
153 cd02952 TRP14_like Human TRX-r 98.8 1.3E-08 2.8E-13 76.3 6.6 90 41-136 12-118 (119)
154 PRK15412 thiol:disulfide inter 98.8 2.6E-08 5.6E-13 81.5 8.6 86 175-268 66-177 (185)
155 cd03008 TryX_like_RdCVF Trypar 98.8 2.1E-08 4.5E-13 78.1 6.8 67 176-242 24-123 (146)
156 PF02114 Phosducin: Phosducin; 98.7 4.2E-08 9.2E-13 84.0 8.7 111 159-272 125-243 (265)
157 TIGR00385 dsbE periplasmic pro 98.7 1.8E-08 3.8E-13 81.6 5.9 86 175-268 61-172 (173)
158 KOG0913 Thiol-disulfide isomer 98.7 8.1E-09 1.8E-13 84.1 3.3 102 159-268 24-127 (248)
159 cd03010 TlpA_like_DsbE TlpA-li 98.7 4E-08 8.7E-13 75.3 6.9 77 176-259 24-126 (127)
160 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 5.6E-08 1.2E-12 69.3 7.1 74 177-260 12-87 (89)
161 PLN02919 haloacid dehalogenase 98.7 5.5E-08 1.2E-12 98.9 9.7 89 176-268 419-537 (1057)
162 KOG0914 Thioredoxin-like prote 98.7 2.4E-08 5.2E-13 80.3 5.6 87 158-245 123-219 (265)
163 cd03011 TlpA_like_ScsD_MtbDsbE 98.7 8.1E-08 1.8E-12 73.0 8.2 91 163-261 7-120 (123)
164 PF01216 Calsequestrin: Calseq 98.7 2.4E-06 5.1E-11 73.9 17.2 240 4-273 119-374 (383)
165 cd02966 TlpA_like_family TlpA- 98.7 8.7E-08 1.9E-12 71.3 7.7 66 177-243 19-110 (116)
166 PRK15317 alkyl hydroperoxide r 98.7 1.4E-06 3E-11 82.9 17.1 175 50-267 20-198 (517)
167 cd02958 UAS UAS family; UAS is 98.6 2.4E-07 5.2E-12 69.5 8.9 89 174-267 14-111 (114)
168 cd02967 mauD Methylamine utili 98.6 1.9E-07 4.1E-12 70.0 7.4 40 176-217 20-59 (114)
169 PRK13728 conjugal transfer pro 98.6 3.4E-07 7.4E-12 73.5 9.2 84 181-269 73-173 (181)
170 COG4232 Thiol:disulfide interc 98.6 1.3E-07 2.9E-12 87.4 6.8 102 162-266 457-567 (569)
171 cd02960 AGR Anterior Gradient 98.5 5E-07 1.1E-11 68.5 8.4 68 174-244 20-93 (130)
172 TIGR03140 AhpF alkyl hydropero 98.5 5.1E-06 1.1E-10 79.0 16.8 176 50-267 20-199 (515)
173 PF13899 Thioredoxin_7: Thiore 98.5 9.9E-08 2.1E-12 67.1 3.3 64 174-239 14-81 (82)
174 cd03067 PDI_b_PDIR_N PDIb fami 98.5 4.3E-07 9.3E-12 64.0 6.1 96 40-138 11-110 (112)
175 smart00594 UAS UAS domain. 98.5 1.1E-06 2.4E-11 66.7 8.8 88 174-263 24-121 (122)
176 PRK03147 thiol-disulfide oxido 98.4 3.2E-06 6.8E-11 68.3 10.6 91 47-139 60-171 (173)
177 cd03012 TlpA_like_DipZ_like Tl 98.4 1.2E-06 2.6E-11 66.9 7.4 43 176-219 22-64 (126)
178 PF13098 Thioredoxin_2: Thiore 98.4 3.3E-07 7.2E-12 68.4 4.2 88 47-136 4-112 (112)
179 TIGR00412 redox_disulf_2 small 98.4 1.6E-06 3.5E-11 59.9 6.8 72 52-136 2-75 (76)
180 TIGR02661 MauD methylamine deh 98.4 2.5E-06 5.3E-11 70.1 9.0 85 176-266 73-178 (189)
181 PRK14018 trifunctional thiored 98.4 3.9E-06 8.5E-11 78.4 11.1 91 44-139 52-172 (521)
182 PLN02399 phospholipid hydroper 98.3 3.1E-06 6.7E-11 71.4 9.4 88 176-267 98-234 (236)
183 cd02973 TRX_GRX_like Thioredox 98.3 2.6E-06 5.7E-11 57.2 6.8 55 52-112 3-58 (67)
184 TIGR02740 TraF-like TraF-like 98.3 4.6E-06 9.9E-11 72.2 9.7 92 48-141 166-265 (271)
185 PF07912 ERp29_N: ERp29, N-ter 98.3 1.9E-05 4E-10 58.3 11.3 106 161-271 6-123 (126)
186 PTZ00056 glutathione peroxidas 98.3 2.6E-06 5.7E-11 70.4 7.5 44 176-220 38-81 (199)
187 PRK00293 dipZ thiol:disulfide 98.3 4.3E-06 9.3E-11 80.0 9.6 90 47-139 473-569 (571)
188 cd02959 ERp19 Endoplasmic reti 98.3 1.6E-06 3.5E-11 65.2 5.2 95 44-140 15-113 (117)
189 PLN02412 probable glutathione 98.2 7E-06 1.5E-10 66.0 8.1 89 176-268 28-165 (167)
190 COG0526 TrxA Thiol-disulfide i 98.2 7.3E-06 1.6E-10 60.8 7.4 66 177-244 32-102 (127)
191 PF08534 Redoxin: Redoxin; In 98.2 4.8E-06 1E-10 65.3 6.6 68 176-244 27-127 (146)
192 PHA02125 thioredoxin-like prot 98.2 7.7E-06 1.7E-10 56.3 6.8 49 52-111 2-51 (75)
193 cd02969 PRX_like1 Peroxiredoxi 98.2 1.2E-05 2.6E-10 64.9 9.0 88 176-268 24-153 (171)
194 KOG2603 Oligosaccharyltransfer 98.2 1.9E-05 4.2E-10 67.4 10.1 119 158-277 39-177 (331)
195 cd03011 TlpA_like_ScsD_MtbDsbE 98.1 1.2E-05 2.7E-10 60.9 8.1 91 39-134 11-120 (123)
196 cd02955 SSP411 TRX domain, SSP 98.1 8.6E-06 1.9E-10 61.7 6.9 97 38-139 5-118 (124)
197 cd02958 UAS UAS family; UAS is 98.1 2.4E-05 5.2E-10 58.6 9.3 93 46-141 15-112 (114)
198 KOG0914 Thioredoxin-like prote 98.1 2.8E-06 6.1E-11 68.6 4.3 84 32-118 125-217 (265)
199 cd01659 TRX_superfamily Thiore 98.1 1.1E-05 2.4E-10 52.7 6.2 58 181-241 1-63 (69)
200 cd03026 AhpF_NTD_C TRX-GRX-lik 98.1 2.1E-05 4.6E-10 56.0 7.9 72 51-133 15-87 (89)
201 cd02966 TlpA_like_family TlpA- 98.1 2.1E-05 4.6E-10 58.2 8.4 75 48-124 19-115 (116)
202 cd03010 TlpA_like_DsbE TlpA-li 98.1 1.6E-05 3.4E-10 60.7 7.8 82 47-132 24-126 (127)
203 TIGR01626 ytfJ_HI0045 conserve 98.1 1.5E-05 3.2E-10 64.5 7.8 83 176-261 58-174 (184)
204 TIGR02738 TrbB type-F conjugat 98.1 3.9E-05 8.5E-10 60.5 9.8 92 45-140 47-153 (153)
205 TIGR02196 GlrX_YruB Glutaredox 98.1 9.9E-06 2.1E-10 55.2 5.4 67 181-264 2-74 (74)
206 TIGR02540 gpx7 putative glutat 98.1 2.5E-05 5.5E-10 61.8 8.4 43 176-219 21-63 (153)
207 PF13728 TraF: F plasmid trans 98.0 2.7E-05 5.8E-10 65.0 7.9 82 177-263 120-214 (215)
208 TIGR02200 GlrX_actino Glutared 98.0 1.9E-05 4.2E-10 54.4 5.9 68 181-264 2-76 (77)
209 TIGR00385 dsbE periplasmic pro 98.0 4.3E-05 9.4E-10 61.7 8.7 90 47-141 62-172 (173)
210 PF13905 Thioredoxin_8: Thiore 98.0 2.3E-05 5.1E-10 56.4 6.3 68 48-117 1-93 (95)
211 PF07912 ERp29_N: ERp29, N-ter 98.0 0.00019 4.2E-09 53.0 10.9 107 32-139 5-118 (126)
212 KOG1672 ATP binding protein [P 98.0 3.3E-05 7.2E-10 61.5 7.1 105 159-267 66-178 (211)
213 smart00594 UAS UAS domain. 97.9 5.9E-05 1.3E-09 57.2 8.3 88 46-136 25-121 (122)
214 PRK15412 thiol:disulfide inter 97.9 7.5E-05 1.6E-09 61.1 9.5 91 47-142 67-178 (185)
215 PF06110 DUF953: Eukaryotic pr 97.9 2.7E-05 5.9E-10 58.2 6.0 65 176-242 18-100 (119)
216 cd03009 TryX_like_TryX_NRX Try 97.9 4.9E-05 1.1E-09 58.3 7.1 69 47-117 17-110 (131)
217 KOG0911 Glutaredoxin-related p 97.9 3.6E-05 7.8E-10 62.9 6.4 176 47-244 16-205 (227)
218 PRK11200 grxA glutaredoxin 1; 97.9 7.1E-05 1.5E-09 52.8 7.0 75 180-268 2-84 (85)
219 cd02981 PDI_b_family Protein D 97.8 9.1E-05 2E-09 53.6 7.4 85 173-266 13-97 (97)
220 PTZ00256 glutathione peroxidas 97.8 0.00013 2.8E-09 59.6 8.9 43 176-219 39-82 (183)
221 cd00340 GSH_Peroxidase Glutath 97.8 3.9E-05 8.4E-10 60.6 5.7 43 176-220 21-63 (152)
222 KOG2501 Thioredoxin, nucleored 97.8 2.7E-05 5.9E-10 60.4 4.5 69 176-244 32-129 (157)
223 PF13192 Thioredoxin_3: Thiore 97.8 0.00011 2.4E-09 50.6 7.0 71 183-264 4-76 (76)
224 TIGR02739 TraF type-F conjugat 97.8 0.00013 2.9E-09 62.0 8.7 88 177-267 150-248 (256)
225 PRK13728 conjugal transfer pro 97.8 0.00022 4.8E-09 57.4 9.4 86 52-141 73-172 (181)
226 KOG3171 Conserved phosducin-li 97.8 0.00011 2.4E-09 59.3 7.3 107 159-268 138-252 (273)
227 PLN02919 haloacid dehalogenase 97.8 0.00016 3.4E-09 74.2 10.1 93 47-141 419-537 (1057)
228 cd02964 TryX_like_family Trypa 97.7 0.00015 3.3E-09 55.7 7.6 69 47-117 16-110 (132)
229 PF00578 AhpC-TSA: AhpC/TSA fa 97.7 0.00013 2.9E-09 55.1 7.0 68 176-244 24-121 (124)
230 PF02114 Phosducin: Phosducin; 97.7 0.00017 3.7E-09 62.0 8.1 104 29-139 123-237 (265)
231 PRK13703 conjugal pilus assemb 97.7 0.00029 6.2E-09 59.7 9.0 88 177-267 143-241 (248)
232 cd03072 PDI_b'_ERp44 PDIb' fam 97.6 0.00033 7.2E-09 52.1 7.9 102 161-268 1-109 (111)
233 cd02967 mauD Methylamine utili 97.6 0.00013 2.8E-09 54.5 5.6 61 47-110 20-82 (114)
234 cd03008 TryX_like_RdCVF Trypar 97.6 0.00018 3.8E-09 56.2 6.5 69 47-117 24-123 (146)
235 KOG3425 Uncharacterized conser 97.6 0.00041 8.9E-09 50.9 7.8 73 167-241 13-105 (128)
236 cd02983 P5_C P5 family, C-term 97.6 0.0014 3E-08 50.2 11.3 109 160-271 3-119 (130)
237 TIGR02180 GRX_euk Glutaredoxin 97.6 9.5E-05 2.1E-09 51.8 4.2 57 181-243 1-64 (84)
238 cd02981 PDI_b_family Protein D 97.6 0.00037 8E-09 50.3 7.3 87 41-138 10-96 (97)
239 KOG0913 Thiol-disulfide isomer 97.6 4E-05 8.6E-10 62.9 2.1 99 32-139 25-125 (248)
240 cd03017 PRX_BCP Peroxiredoxin 97.5 0.00021 4.5E-09 55.4 5.7 43 177-220 23-66 (140)
241 PF14595 Thioredoxin_9: Thiore 97.5 0.00011 2.4E-09 56.1 4.0 66 176-244 40-111 (129)
242 COG2143 Thioredoxin-related pr 97.5 0.00095 2.1E-08 51.4 8.8 88 173-265 38-147 (182)
243 cd02991 UAS_ETEA UAS family, E 97.5 0.0006 1.3E-08 51.1 7.6 90 174-267 14-113 (116)
244 KOG1672 ATP binding protein [P 97.5 0.00028 6E-09 56.3 5.7 104 29-138 64-176 (211)
245 cd02969 PRX_like1 Peroxiredoxi 97.4 0.0023 5E-08 51.5 10.5 96 47-144 24-156 (171)
246 cd03012 TlpA_like_DipZ_like Tl 97.4 0.0012 2.6E-08 50.3 8.3 77 47-125 22-124 (126)
247 TIGR02183 GRXA Glutaredoxin, G 97.4 0.00059 1.3E-08 48.2 6.1 76 181-270 2-85 (86)
248 PTZ00056 glutathione peroxidas 97.4 0.0013 2.7E-08 54.5 8.9 94 47-141 38-179 (199)
249 PLN02399 phospholipid hydroper 97.4 0.0014 3E-08 55.5 9.1 95 47-141 98-235 (236)
250 TIGR03137 AhpC peroxiredoxin. 97.3 0.0013 2.9E-08 53.8 8.4 89 176-266 30-155 (187)
251 cd02991 UAS_ETEA UAS family, E 97.3 0.00099 2.1E-08 49.9 6.6 92 46-141 15-114 (116)
252 cd02968 SCO SCO (an acronym fo 97.2 0.00069 1.5E-08 52.5 5.7 46 176-221 21-69 (142)
253 cd03073 PDI_b'_ERp72_ERp57 PDI 97.2 0.0024 5.2E-08 47.5 7.8 95 164-266 4-110 (111)
254 PRK09437 bcp thioredoxin-depen 97.2 0.0011 2.3E-08 52.5 6.2 45 176-221 29-74 (154)
255 COG4232 Thiol:disulfide interc 97.2 0.00084 1.8E-08 62.8 6.1 102 35-139 458-567 (569)
256 cd03014 PRX_Atyp2cys Peroxired 97.1 0.0011 2.4E-08 51.5 5.9 43 176-221 25-68 (143)
257 PRK00522 tpx lipid hydroperoxi 97.1 0.0011 2.3E-08 53.2 5.8 43 176-221 43-86 (167)
258 PF13192 Thioredoxin_3: Thiore 97.1 0.0037 8E-08 43.0 7.8 71 54-137 4-76 (76)
259 PF08534 Redoxin: Redoxin; In 97.1 0.0015 3.2E-08 51.0 6.4 81 46-128 26-136 (146)
260 PRK10606 btuE putative glutath 97.1 0.001 2.2E-08 54.0 5.5 44 176-221 24-67 (183)
261 PLN02412 probable glutathione 97.1 0.0051 1.1E-07 49.3 9.5 42 47-88 28-71 (167)
262 TIGR02661 MauD methylamine deh 97.1 0.0047 1E-07 50.6 9.4 91 47-141 73-180 (189)
263 TIGR02190 GlrX-dom Glutaredoxi 97.1 0.0015 3.3E-08 45.3 5.5 68 177-263 6-78 (79)
264 cd02970 PRX_like2 Peroxiredoxi 97.1 0.0014 2.9E-08 51.2 5.7 47 177-224 23-70 (149)
265 cd01659 TRX_superfamily Thiore 97.0 0.0025 5.3E-08 41.1 6.1 59 52-116 1-63 (69)
266 PF13728 TraF: F plasmid trans 97.0 0.0047 1E-07 51.6 8.9 83 50-134 122-212 (215)
267 KOG3170 Conserved phosducin-li 97.0 0.011 2.4E-07 47.5 10.2 106 159-268 91-202 (240)
268 KOG0911 Glutaredoxin-related p 97.0 0.00045 9.7E-09 56.6 2.4 74 175-254 15-90 (227)
269 PF03190 Thioredox_DsbH: Prote 97.0 0.0014 3.1E-08 51.7 5.0 75 167-244 28-116 (163)
270 COG0526 TrxA Thiol-disulfide i 97.0 0.0042 9.1E-08 45.5 7.5 66 48-118 32-101 (127)
271 cd03018 PRX_AhpE_like Peroxire 96.9 0.0022 4.8E-08 50.1 6.0 43 178-221 29-72 (149)
272 PRK10382 alkyl hydroperoxide r 96.9 0.0069 1.5E-07 49.5 8.5 90 176-266 30-155 (187)
273 PF00462 Glutaredoxin: Glutare 96.8 0.0017 3.7E-08 42.3 3.8 49 181-237 1-55 (60)
274 COG2143 Thioredoxin-related pr 96.8 0.017 3.7E-07 44.7 9.5 96 45-142 39-151 (182)
275 cd02960 AGR Anterior Gradient 96.8 0.0073 1.6E-07 46.0 7.6 69 44-118 19-91 (130)
276 TIGR02739 TraF type-F conjugat 96.8 0.013 2.7E-07 50.2 9.9 90 50-141 152-249 (256)
277 cd03015 PRX_Typ2cys Peroxiredo 96.8 0.0022 4.8E-08 51.7 5.1 88 176-266 28-156 (173)
278 PRK13190 putative peroxiredoxi 96.8 0.0069 1.5E-07 50.2 7.9 90 177-268 27-155 (202)
279 PRK15000 peroxidase; Provision 96.7 0.0089 1.9E-07 49.4 8.2 90 176-266 33-161 (200)
280 cd02976 NrdH NrdH-redoxin (Nrd 96.7 0.0022 4.8E-08 43.1 3.8 65 181-262 2-72 (73)
281 PRK13703 conjugal pilus assemb 96.7 0.018 3.9E-07 49.0 9.9 91 50-142 145-243 (248)
282 cd02971 PRX_family Peroxiredox 96.7 0.0034 7.3E-08 48.5 5.1 45 176-221 21-66 (140)
283 cd03067 PDI_b_PDIR_N PDIb fami 96.7 0.0082 1.8E-07 42.7 6.4 92 167-265 10-110 (112)
284 PF13899 Thioredoxin_7: Thiore 96.7 0.0018 3.8E-08 45.3 3.1 64 45-114 14-81 (82)
285 KOG2603 Oligosaccharyltransfer 96.6 0.037 7.9E-07 47.8 11.3 119 18-141 27-167 (331)
286 PRK10877 protein disulfide iso 96.6 0.0035 7.6E-08 53.1 5.2 79 176-266 106-230 (232)
287 PRK10329 glutaredoxin-like pro 96.6 0.01 2.2E-07 41.4 6.7 71 180-267 2-77 (81)
288 TIGR02540 gpx7 putative glutat 96.6 0.017 3.7E-07 45.5 8.8 41 47-87 21-63 (153)
289 TIGR02196 GlrX_YruB Glutaredox 96.6 0.0086 1.9E-07 40.2 6.2 71 52-137 2-74 (74)
290 cd03069 PDI_b_ERp57 PDIb famil 96.6 0.0098 2.1E-07 43.6 6.8 88 40-139 10-103 (104)
291 cd03029 GRX_hybridPRX5 Glutare 96.6 0.0071 1.5E-07 41.0 5.7 65 180-263 2-71 (72)
292 cd03066 PDI_b_Calsequestrin_mi 96.6 0.019 4.2E-07 41.8 8.3 90 39-139 9-100 (102)
293 cd00340 GSH_Peroxidase Glutath 96.6 0.011 2.4E-07 46.5 7.4 41 47-88 21-63 (152)
294 PF07449 HyaE: Hydrogenase-1 e 96.5 0.0035 7.6E-08 45.8 3.8 82 31-117 9-93 (107)
295 cd03419 GRX_GRXh_1_2_like Glut 96.5 0.0042 9.2E-08 43.1 4.1 68 181-265 2-76 (82)
296 cd02066 GRX_family Glutaredoxi 96.5 0.0056 1.2E-07 40.9 4.5 53 181-243 2-60 (72)
297 KOG3414 Component of the U4/U6 96.4 0.018 3.8E-07 42.8 6.8 98 167-266 12-119 (142)
298 PTZ00256 glutathione peroxidas 96.3 0.045 9.7E-07 44.6 9.8 42 47-88 39-83 (183)
299 TIGR01626 ytfJ_HI0045 conserve 96.3 0.029 6.3E-07 45.5 8.2 86 47-136 58-176 (184)
300 cd03015 PRX_Typ2cys Peroxiredo 96.3 0.045 9.8E-07 44.0 9.4 93 47-139 28-156 (173)
301 PF00578 AhpC-TSA: AhpC/TSA fa 96.2 0.015 3.3E-07 43.7 6.2 44 47-90 24-70 (124)
302 PF05768 DUF836: Glutaredoxin- 96.1 0.011 2.4E-07 41.1 4.6 79 180-264 1-81 (81)
303 KOG3170 Conserved phosducin-li 96.1 0.059 1.3E-06 43.5 9.1 109 22-139 82-200 (240)
304 TIGR02194 GlrX_NrdH Glutaredox 96.1 0.0093 2E-07 40.4 3.9 49 181-237 1-54 (72)
305 cd03027 GRX_DEP Glutaredoxin ( 96.0 0.011 2.5E-07 40.1 4.2 49 181-237 3-57 (73)
306 cd03418 GRX_GRXb_1_3_like Glut 96.0 0.012 2.5E-07 40.1 4.2 53 181-243 2-61 (75)
307 PF07449 HyaE: Hydrogenase-1 e 96.0 0.01 2.3E-07 43.4 4.0 82 160-245 10-96 (107)
308 PRK13599 putative peroxiredoxi 96.0 0.032 6.8E-07 46.7 7.4 88 177-266 28-155 (215)
309 TIGR02181 GRX_bact Glutaredoxi 95.9 0.0088 1.9E-07 41.3 3.3 53 181-243 1-59 (79)
310 TIGR02189 GlrX-like_plant Glut 95.9 0.014 3.1E-07 42.3 4.5 56 179-244 8-72 (99)
311 cd03020 DsbA_DsbC_DsbG DsbA fa 95.9 0.024 5.2E-07 46.7 6.4 26 176-201 76-101 (197)
312 KOG3414 Component of the U4/U6 95.9 0.095 2.1E-06 39.0 8.6 93 47-144 21-124 (142)
313 TIGR03143 AhpF_homolog putativ 95.8 0.052 1.1E-06 52.3 9.1 118 8-136 433-554 (555)
314 cd03069 PDI_b_ERp57 PDIb famil 95.8 0.052 1.1E-06 39.7 7.1 91 167-266 9-103 (104)
315 PHA03050 glutaredoxin; Provisi 95.7 0.02 4.4E-07 42.2 4.7 59 179-244 13-80 (108)
316 KOG2501 Thioredoxin, nucleored 95.7 0.031 6.8E-07 43.6 5.8 69 47-117 32-126 (157)
317 TIGR02200 GlrX_actino Glutared 95.7 0.028 6.1E-07 38.2 5.1 69 52-137 2-76 (77)
318 cd03014 PRX_Atyp2cys Peroxired 95.7 0.026 5.6E-07 43.8 5.4 58 47-105 25-84 (143)
319 PRK15317 alkyl hydroperoxide r 95.7 0.053 1.2E-06 51.7 8.5 121 8-139 73-197 (517)
320 cd03017 PRX_BCP Peroxiredoxin 95.6 0.06 1.3E-06 41.4 7.4 86 48-133 23-136 (140)
321 PF14595 Thioredoxin_9: Thiore 95.6 0.024 5.2E-07 43.3 4.9 61 50-116 43-107 (129)
322 cd03066 PDI_b_Calsequestrin_mi 95.6 0.11 2.4E-06 37.8 8.1 96 162-266 3-100 (102)
323 TIGR03137 AhpC peroxiredoxin. 95.4 0.14 3.1E-06 41.8 9.1 93 47-139 30-155 (187)
324 cd03074 PDI_b'_Calsequestrin_C 95.4 0.31 6.6E-06 35.3 9.4 87 50-140 22-120 (120)
325 TIGR02180 GRX_euk Glutaredoxin 95.4 0.038 8.2E-07 38.3 4.9 57 52-112 1-60 (84)
326 TIGR00365 monothiol glutaredox 95.0 0.041 9E-07 39.7 4.3 52 178-237 12-73 (97)
327 TIGR03140 AhpF alkyl hydropero 95.0 0.13 2.9E-06 49.0 8.8 121 8-139 74-198 (515)
328 PRK00522 tpx lipid hydroperoxi 95.0 0.056 1.2E-06 43.3 5.4 56 47-103 43-100 (167)
329 PRK10382 alkyl hydroperoxide r 94.9 0.2 4.4E-06 40.9 8.6 93 47-139 30-155 (187)
330 PRK10638 glutaredoxin 3; Provi 94.9 0.044 9.5E-07 38.2 4.1 49 181-237 4-58 (83)
331 cd02972 DsbA_family DsbA famil 94.9 0.093 2E-06 37.0 5.9 35 181-217 1-35 (98)
332 PF02966 DIM1: Mitosis protein 94.9 0.34 7.4E-06 36.6 8.8 87 51-142 23-119 (133)
333 cd02970 PRX_like2 Peroxiredoxi 94.9 0.13 2.8E-06 39.9 7.2 42 49-90 24-68 (149)
334 cd03023 DsbA_Com1_like DsbA fa 94.9 0.062 1.3E-06 41.9 5.3 32 176-207 4-35 (154)
335 PRK13191 putative peroxiredoxi 94.8 0.047 1E-06 45.7 4.7 89 176-266 32-160 (215)
336 PRK09437 bcp thioredoxin-depen 94.8 0.19 4E-06 39.5 7.9 42 47-88 29-73 (154)
337 PTZ00137 2-Cys peroxiredoxin; 94.8 0.061 1.3E-06 46.2 5.4 90 176-266 97-224 (261)
338 COG0695 GrxC Glutaredoxin and 94.7 0.062 1.3E-06 37.3 4.3 49 181-237 3-59 (80)
339 cd03016 PRX_1cys Peroxiredoxin 94.7 0.049 1.1E-06 45.2 4.4 42 179-221 28-69 (203)
340 PRK11657 dsbG disulfide isomer 94.7 0.22 4.7E-06 42.8 8.5 29 176-204 116-144 (251)
341 cd03028 GRX_PICOT_like Glutare 94.5 0.071 1.5E-06 37.8 4.4 56 177-242 7-72 (90)
342 PRK13189 peroxiredoxin; Provis 94.4 0.068 1.5E-06 44.9 4.8 89 176-266 34-162 (222)
343 PF02966 DIM1: Mitosis protein 94.4 0.32 6.9E-06 36.7 7.6 69 167-238 9-81 (133)
344 cd03018 PRX_AhpE_like Peroxire 94.1 0.38 8.1E-06 37.3 8.2 41 49-89 29-72 (149)
345 KOG2640 Thioredoxin [Function 94.0 0.03 6.6E-07 48.3 1.9 85 177-268 76-163 (319)
346 PTZ00253 tryparedoxin peroxida 94.0 0.11 2.4E-06 42.8 5.2 45 176-221 35-80 (199)
347 KOG3171 Conserved phosducin-li 93.9 0.16 3.5E-06 41.5 5.7 102 31-139 138-250 (273)
348 PF05768 DUF836: Glutaredoxin- 93.9 0.12 2.7E-06 35.8 4.4 77 53-137 2-81 (81)
349 PF11009 DUF2847: Protein of u 93.8 0.12 2.5E-06 37.7 4.3 94 38-132 7-104 (105)
350 PRK10606 btuE putative glutath 93.8 1 2.2E-05 36.7 10.2 61 47-111 24-95 (183)
351 cd03068 PDI_b_ERp72 PDIb famil 93.7 0.36 7.7E-06 35.5 6.9 88 40-138 10-106 (107)
352 PF11009 DUF2847: Protein of u 93.6 0.17 3.7E-06 36.9 4.9 76 167-244 8-91 (105)
353 PF13462 Thioredoxin_4: Thiore 93.6 0.23 5E-06 39.1 6.2 44 176-219 11-54 (162)
354 cd02968 SCO SCO (an acronym fo 93.5 0.19 4.2E-06 38.6 5.5 43 47-89 21-69 (142)
355 PRK15000 peroxidase; Provision 93.5 0.53 1.2E-05 38.9 8.3 92 48-139 34-161 (200)
356 cd03068 PDI_b_ERp72 PDIb famil 93.3 0.59 1.3E-05 34.3 7.4 93 167-266 9-107 (107)
357 PRK10877 protein disulfide iso 93.1 0.37 8.1E-06 40.8 7.0 82 48-139 107-230 (232)
358 PRK10824 glutaredoxin-4; Provi 93.1 0.13 2.8E-06 38.3 3.6 57 178-244 15-81 (115)
359 PF03190 Thioredox_DsbH: Prote 93.1 0.12 2.6E-06 40.9 3.6 93 20-117 7-113 (163)
360 PRK11200 grxA glutaredoxin 1; 93.0 0.3 6.5E-06 34.1 5.4 77 52-140 3-83 (85)
361 cd03019 DsbA_DsbA DsbA family, 92.9 0.2 4.3E-06 40.2 4.9 41 176-218 14-54 (178)
362 PF00837 T4_deiodinase: Iodoth 92.3 2.7 5.9E-05 35.4 10.7 80 127-209 53-134 (237)
363 PRK13190 putative peroxiredoxi 92.2 0.91 2E-05 37.5 8.1 87 55-141 35-155 (202)
364 cd03074 PDI_b'_Calsequestrin_C 92.1 2.7 5.9E-05 30.5 9.1 103 162-266 4-119 (120)
365 PTZ00137 2-Cys peroxiredoxin; 91.7 1.6 3.5E-05 37.6 9.1 92 48-139 98-224 (261)
366 cd02976 NrdH NrdH-redoxin (Nrd 91.6 0.68 1.5E-05 30.6 5.6 69 52-135 2-72 (73)
367 cd02974 AhpF_NTD_N Alkyl hydro 91.4 3.1 6.7E-05 29.7 9.0 72 179-265 21-92 (94)
368 PRK11657 dsbG disulfide isomer 91.4 0.99 2.2E-05 38.7 7.6 41 94-137 209-249 (251)
369 PRK12759 bifunctional gluaredo 91.3 0.28 6.1E-06 45.3 4.4 50 180-237 3-66 (410)
370 KOG1752 Glutaredoxin and relat 91.0 0.64 1.4E-05 33.9 5.1 53 179-237 14-73 (104)
371 cd03016 PRX_1cys Peroxiredoxin 90.9 1.6 3.4E-05 36.1 8.2 85 55-139 33-153 (203)
372 cd02971 PRX_family Peroxiredox 90.6 0.57 1.2E-05 35.8 5.0 43 47-89 21-66 (140)
373 cd03020 DsbA_DsbC_DsbG DsbA fa 90.5 0.78 1.7E-05 37.7 6.0 37 93-136 161-197 (197)
374 PF06110 DUF953: Eukaryotic pr 90.3 0.86 1.9E-05 34.1 5.4 69 46-116 17-99 (119)
375 PRK13191 putative peroxiredoxi 89.0 2.2 4.8E-05 35.6 7.6 89 51-139 35-160 (215)
376 cd02974 AhpF_NTD_N Alkyl hydro 88.6 6.5 0.00014 28.1 8.7 73 50-139 20-93 (94)
377 COG3634 AhpF Alkyl hydroperoxi 88.5 14 0.00031 33.2 12.2 163 60-265 31-196 (520)
378 TIGR02190 GlrX-dom Glutaredoxi 88.1 1.2 2.7E-05 30.5 4.6 55 50-112 8-63 (79)
379 PRK10954 periplasmic protein d 87.6 0.77 1.7E-05 38.1 4.0 40 177-218 37-79 (207)
380 KOG3425 Uncharacterized conser 87.6 3.6 7.8E-05 30.6 6.9 68 46-115 23-104 (128)
381 PRK13189 peroxiredoxin; Provis 87.3 3.6 7.8E-05 34.6 7.9 86 55-140 43-163 (222)
382 PTZ00253 tryparedoxin peroxida 87.3 4.1 8.9E-05 33.5 8.1 92 48-139 36-163 (199)
383 cd03031 GRX_GRX_like Glutaredo 87.1 1.1 2.4E-05 35.0 4.3 49 181-237 2-66 (147)
384 TIGR02183 GRXA Glutaredoxin, G 87.0 2 4.4E-05 30.0 5.3 77 52-140 2-82 (86)
385 PRK13599 putative peroxiredoxi 85.7 5.3 0.00011 33.4 8.0 86 54-139 35-155 (215)
386 PRK10329 glutaredoxin-like pro 85.7 4.1 8.9E-05 28.1 6.2 75 52-141 3-78 (81)
387 PF00462 Glutaredoxin: Glutare 85.2 1.2 2.6E-05 28.5 3.2 52 53-112 2-55 (60)
388 cd02066 GRX_family Glutaredoxi 84.7 1.8 3.9E-05 28.2 4.0 53 52-112 2-56 (72)
389 cd03419 GRX_GRXh_1_2_like Glut 83.9 2.6 5.7E-05 28.7 4.7 54 52-111 2-58 (82)
390 PF13778 DUF4174: Domain of un 83.2 12 0.00026 27.9 8.3 87 50-139 10-111 (118)
391 cd03040 GST_N_mPGES2 GST_N fam 83.2 5.1 0.00011 26.9 5.8 73 181-268 2-77 (77)
392 KOG2640 Thioredoxin [Function 82.5 1.3 2.9E-05 38.5 3.1 87 48-141 76-163 (319)
393 PF00837 T4_deiodinase: Iodoth 82.4 9.2 0.0002 32.3 7.9 57 30-86 81-141 (237)
394 cd03071 PDI_b'_NRX PDIb' famil 82.2 9.8 0.00021 27.7 6.8 86 50-140 16-115 (116)
395 cd02972 DsbA_family DsbA famil 82.0 5.3 0.00011 27.7 5.8 60 53-114 2-91 (98)
396 TIGR02194 GlrX_NrdH Glutaredox 80.8 3.3 7.2E-05 27.6 4.1 67 54-134 3-70 (72)
397 PF06053 DUF929: Domain of unk 80.8 7.6 0.00017 33.1 7.0 70 160-240 45-114 (249)
398 cd03041 GST_N_2GST_N GST_N fam 80.6 6.8 0.00015 26.4 5.7 69 181-266 2-76 (77)
399 cd03029 GRX_hybridPRX5 Glutare 78.8 6 0.00013 26.3 4.9 68 52-136 3-71 (72)
400 cd02977 ArsC_family Arsenate R 78.7 2 4.3E-05 31.3 2.6 79 181-268 1-88 (105)
401 COG0278 Glutaredoxin-related p 77.2 2.3 5E-05 30.5 2.4 52 186-244 27-82 (105)
402 PHA03075 glutaredoxin-like pro 76.8 2.1 4.5E-05 31.5 2.1 30 178-207 2-31 (123)
403 cd03037 GST_N_GRX2 GST_N famil 76.8 7.8 0.00017 25.5 5.0 20 183-202 3-22 (71)
404 cd03027 GRX_DEP Glutaredoxin ( 75.8 11 0.00024 25.0 5.6 53 52-112 3-57 (73)
405 PF13417 GST_N_3: Glutathione 75.4 14 0.0003 24.7 6.0 70 183-269 1-73 (75)
406 TIGR02189 GlrX-like_plant Glut 73.4 7.6 0.00017 27.9 4.5 55 50-112 8-67 (99)
407 cd03036 ArsC_like Arsenate Red 71.4 4.3 9.3E-05 29.9 2.8 77 182-266 2-87 (111)
408 COG4545 Glutaredoxin-related p 71.0 4.1 8.9E-05 27.5 2.3 21 182-202 5-25 (85)
409 cd03013 PRX5_like Peroxiredoxi 70.6 9.9 0.00021 29.8 4.9 47 177-224 29-78 (155)
410 cd03418 GRX_GRXb_1_3_like Glut 70.3 16 0.00035 24.2 5.3 53 52-112 2-57 (75)
411 cd02978 KaiB_like KaiB-like fa 69.7 16 0.00034 24.7 4.9 53 54-111 5-60 (72)
412 PRK01655 spxA transcriptional 69.4 5.5 0.00012 30.4 3.1 36 181-224 2-37 (131)
413 cd03060 GST_N_Omega_like GST_N 69.2 9.3 0.0002 25.2 3.9 50 182-237 2-54 (71)
414 cd03035 ArsC_Yffb Arsenate Red 68.8 3.8 8.2E-05 29.9 2.0 36 181-224 1-36 (105)
415 PF13462 Thioredoxin_4: Thiore 68.5 13 0.00028 28.9 5.3 40 50-89 13-56 (162)
416 TIGR02742 TrbC_Ftype type-F co 67.6 19 0.00041 27.5 5.6 54 215-268 55-116 (130)
417 cd03023 DsbA_Com1_like DsbA fa 67.1 12 0.00026 28.6 4.8 37 50-87 7-44 (154)
418 PF02630 SCO1-SenC: SCO1/SenC; 66.4 16 0.00035 29.2 5.4 48 176-223 51-100 (174)
419 TIGR01617 arsC_related transcr 65.2 7 0.00015 29.0 2.9 77 182-267 2-88 (117)
420 COG1225 Bcp Peroxiredoxin [Pos 64.3 14 0.00029 29.2 4.4 57 47-103 29-88 (157)
421 cd03059 GST_N_SspA GST_N famil 64.1 22 0.00048 23.2 5.0 67 182-265 2-71 (73)
422 COG1225 Bcp Peroxiredoxin [Pos 64.1 17 0.00037 28.7 4.9 45 176-221 29-74 (157)
423 PF13743 Thioredoxin_5: Thiore 64.1 12 0.00025 30.2 4.1 34 183-218 2-35 (176)
424 cd03019 DsbA_DsbA DsbA family, 64.0 13 0.00029 29.4 4.5 41 48-88 15-56 (178)
425 cd03032 ArsC_Spx Arsenate Redu 62.0 11 0.00025 27.8 3.5 78 181-267 2-87 (115)
426 PRK12559 transcriptional regul 61.9 10 0.00022 28.9 3.3 36 181-224 2-37 (131)
427 TIGR02654 circ_KaiB circadian 61.0 26 0.00056 24.6 4.8 67 54-127 8-76 (87)
428 PRK09301 circadian clock prote 60.7 31 0.00068 25.0 5.3 67 54-127 11-79 (103)
429 COG2761 FrnE Predicted dithiol 60.0 22 0.00047 29.9 5.1 43 95-144 175-217 (225)
430 PHA03050 glutaredoxin; Provisi 57.4 13 0.00028 27.3 3.1 58 50-112 13-75 (108)
431 TIGR02181 GRX_bact Glutaredoxi 57.0 7.6 0.00016 26.3 1.7 52 53-112 2-55 (79)
432 cd00570 GST_N_family Glutathio 54.8 28 0.0006 21.9 4.2 50 182-237 2-55 (71)
433 KOG2507 Ubiquitin regulatory p 53.1 78 0.0017 29.2 7.6 91 47-140 17-111 (506)
434 COG0695 GrxC Glutaredoxin and 52.7 35 0.00077 23.3 4.5 52 53-112 4-59 (80)
435 PRK10638 glutaredoxin 3; Provi 51.2 38 0.00082 23.1 4.5 53 52-112 4-58 (83)
436 cd03013 PRX5_like Peroxiredoxi 50.1 26 0.00057 27.4 4.0 55 48-102 29-88 (155)
437 PRK13344 spxA transcriptional 49.2 24 0.00052 26.9 3.5 36 181-224 2-37 (132)
438 PF09673 TrbC_Ftype: Type-F co 49.0 38 0.00082 25.0 4.4 45 194-240 36-80 (113)
439 PF04592 SelP_N: Selenoprotein 48.6 29 0.00063 29.2 4.0 47 175-221 24-72 (238)
440 COG1999 Uncharacterized protei 48.5 1.1E+02 0.0023 25.4 7.5 56 47-102 66-127 (207)
441 cd02978 KaiB_like KaiB-like fa 47.6 62 0.0013 21.8 4.8 57 180-237 3-61 (72)
442 PF02630 SCO1-SenC: SCO1/SenC; 46.8 70 0.0015 25.6 6.0 54 47-100 51-109 (174)
443 COG2761 FrnE Predicted dithiol 46.4 38 0.00083 28.4 4.4 41 225-272 178-218 (225)
444 COG1651 DsbG Protein-disulfide 42.9 59 0.0013 27.4 5.3 43 178-221 85-127 (244)
445 COG1999 Uncharacterized protei 42.9 82 0.0018 26.1 6.0 57 165-222 56-115 (207)
446 cd03028 GRX_PICOT_like Glutare 41.6 24 0.00051 24.7 2.3 47 58-112 21-69 (90)
447 cd03051 GST_N_GTT2_like GST_N 41.0 21 0.00046 23.2 1.9 21 182-202 2-22 (74)
448 PF07689 KaiB: KaiB domain; I 39.4 20 0.00043 24.9 1.5 46 60-110 9-55 (82)
449 cd03033 ArsC_15kD Arsenate Red 39.2 30 0.00065 25.6 2.6 35 181-223 2-36 (113)
450 PF09673 TrbC_Ftype: Type-F co 39.2 1.6E+02 0.0034 21.7 6.9 54 52-115 25-80 (113)
451 PF01323 DSBA: DSBA-like thior 39.1 37 0.0008 27.2 3.4 40 180-220 1-40 (193)
452 KOG2507 Ubiquitin regulatory p 39.1 1.7E+02 0.0036 27.2 7.5 84 176-264 17-108 (506)
453 cd03025 DsbA_FrnE_like DsbA fa 39.0 48 0.001 26.6 4.0 27 181-207 3-29 (193)
454 TIGR00365 monothiol glutaredox 37.5 23 0.00049 25.3 1.6 47 58-112 25-73 (97)
455 PF09822 ABC_transp_aux: ABC-t 37.3 1.9E+02 0.0041 24.8 7.7 39 63-104 46-88 (271)
456 cd02990 UAS_FAF1 UAS family, F 34.7 2.1E+02 0.0046 22.0 9.2 91 175-267 19-133 (136)
457 TIGR02742 TrbC_Ftype type-F co 34.1 64 0.0014 24.6 3.7 44 93-138 60-113 (130)
458 PF08806 Sep15_SelM: Sep15/Sel 33.9 54 0.0012 22.5 3.0 35 231-267 41-76 (78)
459 PF01323 DSBA: DSBA-like thior 33.6 49 0.0011 26.5 3.3 37 94-137 157-193 (193)
460 COG1331 Highly conserved prote 33.1 1.2E+02 0.0026 29.9 6.1 78 164-244 31-122 (667)
461 PRK10954 periplasmic protein d 32.8 59 0.0013 26.7 3.7 40 48-87 37-80 (207)
462 cd02990 UAS_FAF1 UAS family, F 32.2 2.3E+02 0.0051 21.7 8.6 89 49-140 22-133 (136)
463 COG3531 Predicted protein-disu 31.7 77 0.0017 26.0 3.9 44 93-140 163-209 (212)
464 KOG1752 Glutaredoxin and relat 31.6 1.7E+02 0.0036 21.3 5.3 55 50-112 14-73 (104)
465 PF00255 GSHPx: Glutathione pe 30.8 2.2E+02 0.0047 20.9 5.9 46 176-223 20-65 (108)
466 COG3411 Ferredoxin [Energy pro 30.3 83 0.0018 20.6 3.2 30 232-268 17-46 (64)
467 cd03045 GST_N_Delta_Epsilon GS 29.9 33 0.00071 22.5 1.4 21 182-202 2-22 (74)
468 PRK12759 bifunctional gluaredo 29.8 96 0.0021 28.8 4.8 53 52-112 4-66 (410)
469 PF13743 Thioredoxin_5: Thiore 29.2 78 0.0017 25.4 3.7 36 54-89 2-38 (176)
470 KOG2792 Putative cytochrome C 28.9 2.2E+02 0.0048 24.6 6.2 45 177-221 139-188 (280)
471 COG1393 ArsC Arsenate reductas 28.8 58 0.0012 24.3 2.6 23 180-202 2-24 (117)
472 cd03055 GST_N_Omega GST_N fami 28.5 1.2E+02 0.0026 20.9 4.2 52 180-237 18-72 (89)
473 cd03034 ArsC_ArsC Arsenate Red 27.2 49 0.0011 24.3 2.0 76 182-266 2-85 (112)
474 PF07700 HNOB: Heme NO binding 26.4 1E+02 0.0022 24.5 3.9 40 50-89 129-170 (171)
475 COG1651 DsbG Protein-disulfide 25.6 84 0.0018 26.4 3.5 39 93-139 204-242 (244)
476 TIGR00014 arsC arsenate reduct 25.6 55 0.0012 24.1 2.0 76 182-266 2-86 (114)
477 PRK09301 circadian clock prote 23.2 2.2E+02 0.0047 20.8 4.6 73 178-255 6-80 (103)
478 COG3019 Predicted metal-bindin 22.8 3.7E+02 0.008 20.8 6.1 74 52-138 28-102 (149)
479 TIGR02654 circ_KaiB circadian 22.2 2.4E+02 0.0053 19.8 4.5 58 180-238 5-64 (87)
480 cd03054 GST_N_Metaxin GST_N fa 22.2 2.3E+02 0.005 18.3 5.1 15 187-201 14-28 (72)
481 PF04551 GcpE: GcpE protein; 21.2 92 0.002 28.1 2.8 75 189-266 271-358 (359)
482 PRK13730 conjugal transfer pil 20.4 1.6E+02 0.0035 24.3 3.9 46 217-266 148-193 (212)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-40 Score=298.46 Aligned_cols=264 Identities=48% Similarity=0.786 Sum_probs=240.3
Q ss_pred CCcccCCccccccCCCCHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeC--CchhhHHHHHHHHHHHcCC
Q 021468 1 MVKKETEKISYFDGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG 78 (312)
Q Consensus 1 ~~~~~d~~~~~y~g~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~i~f~~~~--~~c~~~~~~~~~la~~~~~ 78 (312)
|+++.|+....|+|+++.+.|..||+.+++|++.++|.++...++.+....-++||... ...+.+.+.+.++|++|++
T Consensus 207 l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~ 286 (493)
T KOG0190|consen 207 LFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKG 286 (493)
T ss_pred eccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhccc
Confidence 46788999999999999999999999999999999999999998888666667777755 5889999999999999999
Q ss_pred eEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC-CCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 021468 79 KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLEGKLKPFFKSDPIPETN 157 (312)
Q Consensus 79 ~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~l~~~~~~~~~s~~~~~~~ 157 (312)
++.|+.+|... +.+.+..||+....+|..++...+...+|..... .+.++|..|+.+++.|+++++++|+++|+++
T Consensus 287 ~l~Fi~~d~e~---~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~ 363 (493)
T KOG0190|consen 287 KLRFILIDPES---FARVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQPIPEDN 363 (493)
T ss_pred ceEEEEEChHH---hhHHHHhcCcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccccCCCCccc
Confidence 99999997666 5579999999965567666666666677877665 8888999999999999999999999999998
Q ss_pred C-CCeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCCCceEE
Q 021468 158 D-GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTIL 236 (312)
Q Consensus 158 ~-~~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~i~~~Pt~~ 236 (312)
. .+|+.+.+++|++.+.+.+|++||.||||||+||+++.|.|++||..+++..++.++++|.+.|+.....+.++|||+
T Consensus 364 ~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~fPTI~ 443 (493)
T KOG0190|consen 364 DRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPSLKVDGFPTIL 443 (493)
T ss_pred ccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCccccccccceEE
Confidence 6 889999999999999999999999999999999999999999999999998899999999999999988899999999
Q ss_pred EEeCCCcccCceeeccCcCHHHHHHHHHhcCC
Q 021468 237 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 268 (312)
Q Consensus 237 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 268 (312)
+|++|.+. +|+.|.|.++.++|..|+.+++.
T Consensus 444 ~~pag~k~-~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 444 FFPAGHKS-NPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred EecCCCCC-CCcccCCCcchHHHHhhhccCCC
Confidence 99999887 79999999999999999999976
No 2
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=1.2e-33 Score=264.00 Aligned_cols=267 Identities=43% Similarity=0.738 Sum_probs=231.4
Q ss_pred CcccCCcc--ccccCCC--CHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeC---CchhhHHHHHHHHHH
Q 021468 2 VKKETEKI--SYFDGKF--DKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAAK 74 (312)
Q Consensus 2 ~~~~d~~~--~~y~g~~--~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~i~f~~~~---~~c~~~~~~~~~la~ 74 (312)
|+..++.. +.|.|+. +.+.|..||..+..|.+.+++..++..++..+ +.+++|+... ..|+.+...|+++|.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~ 262 (462)
T TIGR01130 184 FKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAK 262 (462)
T ss_pred ecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHH
Confidence 44444444 4788875 56899999999999999999999998888776 5555554433 458999999999999
Q ss_pred HcCC-eEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCC-CCCHHHHHHHHHHHhcCCCCCCCCCCC
Q 021468 75 SFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDFLEGKLKPFFKSDP 152 (312)
Q Consensus 75 ~~~~-~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g-~~~~~~i~~fi~~~l~~~~~~~~~s~~ 152 (312)
++.+ .+.|+.+|+.. ++.+|+.+|+.....|+++++.......|.+.+ ..+.++|.+|++++++|++++.++|++
T Consensus 263 ~~~~~~i~f~~~d~~~---~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~ 339 (462)
T TIGR01130 263 KFRGKFVNFAVADEED---FGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEP 339 (462)
T ss_pred HCCCCeEEEEEecHHH---hHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCC
Confidence 9997 89999999987 669999999996556999998766434567765 789999999999999999999999999
Q ss_pred CCCCCCCCeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCC-CcEEEEEEeCCCcccccCCCCC
Q 021468 153 IPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEHHRAKSDG 231 (312)
Q Consensus 153 ~~~~~~~~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~~~~~i~~ 231 (312)
.|+...+.+..+++.+|.+.+.+.+++++|+||++||++|+.+.|.|.+++..+++. ..+.|+.+|++.+....+++.+
T Consensus 340 ~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~~~~i~~ 419 (462)
T TIGR01130 340 IPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPPFEVEG 419 (462)
T ss_pred CCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccCCCCccc
Confidence 998878899999999999999888999999999999999999999999999999873 3699999999998875599999
Q ss_pred CceEEEEeCCCcccCceeeccCcCHHHHHHHHHhcCCCCccc
Q 021468 232 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI 273 (312)
Q Consensus 232 ~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~ 273 (312)
+|++++|++|... .+..|.|..+.+.|.+||.+++..+++.
T Consensus 420 ~Pt~~~~~~~~~~-~~~~~~g~~~~~~l~~~l~~~~~~~~~~ 460 (462)
T TIGR01130 420 FPTIKFVPAGKKS-EPVPYDGDRTLEDFSKFIAKHATFPLEG 460 (462)
T ss_pred cCEEEEEeCCCCc-CceEecCcCCHHHHHHHHHhcCCCCCcC
Confidence 9999999999876 5779999999999999999998876654
No 3
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=1.8e-33 Score=263.93 Aligned_cols=257 Identities=36% Similarity=0.602 Sum_probs=220.2
Q ss_pred CcccCCccccccCCCCHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEeeCCchhhHHHHHHHHHHHcCCeEE
Q 021468 2 VKKETEKISYFDGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLI 81 (312)
Q Consensus 2 ~~~~d~~~~~y~g~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~i~f~~~~~~c~~~~~~~~~la~~~~~~i~ 81 (312)
||..++....| +..+.++|..||..+..|.+.+++.+++..++..+... ++|+....+.+.+.+.|+++|+++++++.
T Consensus 204 ~~~~~~~~~~~-~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 281 (477)
T PTZ00102 204 LHKDEEGVELF-MGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDL-VWFCGTTEDYDKYKSVVRKVARKLREKYA 281 (477)
T ss_pred EecCCCCcccC-CCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccE-EEEecCHHHHHHHHHHHHHHHHhccCceE
Confidence 45544444444 44688999999999999999999999999988877533 33332225677899999999999999999
Q ss_pred EEEEeCCCCccccc-hhhhhCCCCCCCcEEEEEcCCCCceeccCCC----CCHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 021468 82 FVYVQMDNEDVGKP-VSEYFGITGEAPKVLAYTGNDDAKKHILDGE----LTLDKIKTFGEDFLEGKLKPFFKSDPIPET 156 (312)
Q Consensus 82 f~~vd~~~~~~~~~-l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~----~~~~~i~~fi~~~l~~~~~~~~~s~~~~~~ 156 (312)
|+.+|++. .+. +++.+|+..+ |++++...+. +|.+.+. ++.++|.+|++++++|++.++++|+++|+.
T Consensus 282 f~~vd~~~---~~~~~~~~~gi~~~--P~~~i~~~~~--~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~ 354 (477)
T PTZ00102 282 FVWLDTEQ---FGSHAKEHLLIEEF--PGLAYQSPAG--RYLLPPAKESFDSVEALIEFFKDVEAGKVEKSIKSEPIPEE 354 (477)
T ss_pred EEEEechh---cchhHHHhcCcccC--ceEEEEcCCc--ccCCCccccccCCHHHHHHHHHHHhCCCCCcccccCCCCCC
Confidence 99999998 444 8899999988 9988876443 4555443 789999999999999999999999999988
Q ss_pred CCCCeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCce
Q 021468 157 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT 234 (312)
Q Consensus 157 ~~~~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt 234 (312)
..+.|+.+++++|.+.+.+.+++++|+||++||++|+.+.|.|.+++..+++...+.++.+|++.+.. ..+++.++|+
T Consensus 355 ~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt 434 (477)
T PTZ00102 355 QDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPT 434 (477)
T ss_pred CCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCe
Confidence 88899999999999998888999999999999999999999999999999875579999999998876 6899999999
Q ss_pred EEEEeCCCcccCceeeccCcCHHHHHHHHHhcCCC
Q 021468 235 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 269 (312)
Q Consensus 235 ~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~ 269 (312)
+++|++|.+ .++.|.|..+.+.|.+||++++..
T Consensus 435 ~~~~~~~~~--~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 435 ILFVKAGER--TPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred EEEEECCCc--ceeEecCcCCHHHHHHHHHHcCCC
Confidence 999998876 356899999999999999999864
No 4
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.6e-26 Score=210.23 Aligned_cols=215 Identities=28% Similarity=0.453 Sum_probs=187.6
Q ss_pred CCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCC
Q 021468 38 RENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 116 (312)
Q Consensus 38 ~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~ 116 (312)
...+.........++|.||++| ++|+.+.|.|.+++..+++++.++.|||+. ++.+|+.|+|.++ |++.+|..+
T Consensus 37 ~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~---~~~~~~~y~i~gf--Ptl~~f~~~ 111 (383)
T KOG0191|consen 37 DSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE---HKDLCEKYGIQGF--PTLKVFRPG 111 (383)
T ss_pred cccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh---hHHHHHhcCCccC--cEEEEEcCC
Confidence 3334455677789999999999 999999999999999999999999999999 7899999999999 999999998
Q ss_pred CCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC-CeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcc
Q 021468 117 DAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDG-DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAF 195 (312)
Q Consensus 117 ~~~~~~~~g~~~~~~i~~fi~~~l~~~~~~~~~s~~~~~~~~~-~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~ 195 (312)
...+.|.|..+.+.+..|+...+....... .. .+..+...+|...+.+...+++|.||+|||++|+.+
T Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l 180 (383)
T KOG0191|consen 112 -KKPIDYSGPRNAESLAEFLIKELEPSVKKL----------VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKL 180 (383)
T ss_pred -CceeeccCcccHHHHHHHHHHhhccccccc----------cCCceEEccccchhhhhhccCcceEEEEeccccHHhhhc
Confidence 567889999999999999999877443221 12 488899999999998899999999999999999999
Q ss_pred hHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeeccCcCHHHHHHHHHhcCCCC
Q 021468 196 EPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 270 (312)
Q Consensus 196 ~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~ 270 (312)
.|.|.+++..+.....+.++.+|++.... ..+++.++|++.+|+.|.+ ....|.|.++.+.+.+|+++.....
T Consensus 181 ~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~--~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 181 APEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE--DIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred ChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc--ccccccccccHHHHHHHHHhhcCCC
Confidence 99999999999865589999999984443 7899999999999999887 2337788999999999999997654
No 5
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.90 E-value=1.4e-22 Score=169.96 Aligned_cols=187 Identities=10% Similarity=0.063 Sum_probs=142.7
Q ss_pred ccEEEEEe---eC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCC
Q 021468 50 KNQLLLFA---VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG 125 (312)
Q Consensus 50 ~~~i~f~~---~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g 125 (312)
..+++|++ +| ++|+.+.|.+++++..+.+ +.+..++++... ++.++++|+|.+. |++++|.+|......+.|
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~-~~i~~v~vd~~~-~~~l~~~~~V~~~--Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK-LKLEIYDFDTPE-DKEEAEKYGVERV--PTTIILEEGKDGGIRYTG 96 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC-ceEEEEecCCcc-cHHHHHHcCCCcc--CEEEEEeCCeeeEEEEee
Confidence 44667888 89 9999999999999999964 444444444322 7799999999999 999999988754457889
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCccchhhhhcCCCc-EEEEEEcCCChhhhcchHHHHHHHH
Q 021468 126 ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAK 204 (312)
Q Consensus 126 ~~~~~~i~~fi~~~l~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~i~~~~k~-~lV~f~~~~C~~C~~~~~~~~~la~ 204 (312)
..+.+.+..|++.+++-.-. ...++..+.+.+ ....++ .++.||++||++|+.+.+.+..++.
T Consensus 97 ~~~~~~l~~~i~~~~~~~~~---------------~~~L~~~~~~~l-~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~ 160 (215)
T TIGR02187 97 IPAGYEFAALIEDIVRVSQG---------------EPGLSEKTVELL-QSLDEPVRIEVFVTPTCPYCPYAVLMAHKFAL 160 (215)
T ss_pred cCCHHHHHHHHHHHHHhcCC---------------CCCCCHHHHHHH-HhcCCCcEEEEEECCCCCCcHHHHHHHHHHHH
Confidence 89999999999988641100 112333333332 233444 5666999999999999999999998
Q ss_pred HhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeeccCcCHHHHHHHHHh
Q 021468 205 HLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 265 (312)
Q Consensus 205 ~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~ 265 (312)
... .+.+..+|.+.+.. .+++|.++||++++.+|. .+.|....+.|.+||.+
T Consensus 161 ~~~---~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~------~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 161 AND---KILGEMIEANENPDLAEKYGVMSVPKIVINKGVE------EFVGAYPEEQFLEYILS 214 (215)
T ss_pred hcC---ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE------EEECCCCHHHHHHHHHh
Confidence 742 58888999888876 789999999999986553 37888888999999875
No 6
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.82 E-value=8.5e-20 Score=136.20 Aligned_cols=101 Identities=18% Similarity=0.253 Sum_probs=90.0
Q ss_pred CCCeEEEeCccchhhh--hcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCCC
Q 021468 158 DGDVKIVVGNNFDEIV--LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGF 232 (312)
Q Consensus 158 ~~~v~~l~~~~f~~~i--~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~i~~~ 232 (312)
.+.|..++..+|++.+ .+.++.++|+||++||++|+.+.|.|.++|+.+++ .+.|+++||+.+.. .+|+|.++
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCccc
Confidence 4679999999999973 57789999999999999999999999999999976 59999999998864 47999999
Q ss_pred ceEEEEeCCCcccCceeeccCcCHHHHHHHH
Q 021468 233 PTILFFPAGNKSFDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 233 Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi 263 (312)
||+++|++|+. +..|.|..+.+.|..|+
T Consensus 86 PTl~lf~~g~~---~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 86 PVIHLYYRSRG---PIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CEEEEEECCcc---ceEEeCCCCHHHHHhhC
Confidence 99999998875 35899999999999874
No 7
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-19 Score=137.70 Aligned_cols=104 Identities=23% Similarity=0.416 Sum_probs=95.9
Q ss_pred CeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEE
Q 021468 160 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 237 (312)
Q Consensus 160 ~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~ 237 (312)
.+..++..+|++.+.+++.+|+|.|||+||++|+.+.|.+++++..+.+ .+.|+++|.+.+.. .+|+|..+||+++
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEEE
Confidence 4556788999999999999999999999999999999999999999987 69999999999887 7999999999999
Q ss_pred EeCCCcccCceeeccCcCHHHHHHHHHhcCC
Q 021468 238 FPAGNKSFDPINVDVDRTVVALYKFLKKNAS 268 (312)
Q Consensus 238 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 268 (312)
|++|.+.+ .+.|..+.+.|.+||++.+.
T Consensus 122 fknGe~~d---~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGEKVD---RFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECCEEee---eecccCCHHHHHHHHHHHhc
Confidence 99999876 88899999999999988753
No 8
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.80 E-value=3.1e-19 Score=131.96 Aligned_cols=101 Identities=32% Similarity=0.651 Sum_probs=93.8
Q ss_pred eEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 021468 161 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF 238 (312)
Q Consensus 161 v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~ 238 (312)
|..++.++|++.+.+.+++++|+||++||++|+.+.|.|.+++..+.+ ++.|+.+|++.+.. .+|++.++|++++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 567999999999977789999999999999999999999999999987 69999999998865 89999999999999
Q ss_pred eCCCcccCceeeccCcCHHHHHHHHHhc
Q 021468 239 PAGNKSFDPINVDVDRTVVALYKFLKKN 266 (312)
Q Consensus 239 ~~g~~~~~~~~y~g~~~~~~l~~fi~~~ 266 (312)
++|+... +|.|..+.+.|.+||++|
T Consensus 79 ~~g~~~~---~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEVK---RYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEEE---EEESSSSHHHHHHHHHHH
T ss_pred ECCcEEE---EEECCCCHHHHHHHHHcC
Confidence 9998864 999999999999999986
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.80 E-value=3.5e-19 Score=131.37 Aligned_cols=97 Identities=25% Similarity=0.547 Sum_probs=87.2
Q ss_pred CeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEE
Q 021468 160 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 237 (312)
Q Consensus 160 ~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~ 237 (312)
.+..++.++|++.+ ..+++++|+||++||++|+.+.|.|.++++.+++ .+.|+.+||+.+.. .+++|.++||+++
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 46789999999987 5568999999999999999999999999999987 59999999998766 7899999999999
Q ss_pred EeCCCcccCceeeccCcCHHHHHHH
Q 021468 238 FPAGNKSFDPINVDVDRTVVALYKF 262 (312)
Q Consensus 238 ~~~g~~~~~~~~y~g~~~~~~l~~f 262 (312)
|++|.... .|.|..+.+.|.+|
T Consensus 79 ~~~g~~~~---~~~G~~~~~~l~~f 100 (101)
T cd03003 79 FPSGMNPE---KYYGDRSKESLVKF 100 (101)
T ss_pred EcCCCCcc---cCCCCCCHHHHHhh
Confidence 99987654 89999999999887
No 10
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.79 E-value=3.3e-19 Score=132.29 Aligned_cols=100 Identities=28% Similarity=0.589 Sum_probs=88.6
Q ss_pred CeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEE
Q 021468 160 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 237 (312)
Q Consensus 160 ~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~ 237 (312)
.+..++.++|++.+.+.+++++|.||++||++|+.+.|.|.+++..+.+ .+.|+.+|++.+.. .+++|.++|++++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 4678899999999888888999999999999999999999999999976 69999999999876 6899999999999
Q ss_pred EeCCCcccCceeeccCcC-HHHHHHHH
Q 021468 238 FPAGNKSFDPINVDVDRT-VVALYKFL 263 (312)
Q Consensus 238 ~~~g~~~~~~~~y~g~~~-~~~l~~fi 263 (312)
|++|.. ....|.|..+ .++|.+||
T Consensus 80 ~~~g~~--~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNAS--KYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCC--CceEccCCCCCHHHHHhhC
Confidence 998833 3458999876 99999885
No 11
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.79 E-value=9.9e-19 Score=129.56 Aligned_cols=103 Identities=61% Similarity=1.093 Sum_probs=92.1
Q ss_pred CeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCCCceEEEE
Q 021468 160 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFF 238 (312)
Q Consensus 160 ~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~i~~~Pt~~~~ 238 (312)
+|..|++++|++.+.+.+++++|+||++||++|+.+.+.|.+++..+++..++.++.+|++.+.. ..+++.++|++++|
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFF 80 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEE
Confidence 47889999999988877899999999999999999999999999999875579999999998865 57888999999999
Q ss_pred eCCCcccCceeeccCcCHHHHHHHH
Q 021468 239 PAGNKSFDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 239 ~~g~~~~~~~~y~g~~~~~~l~~fi 263 (312)
++|.+. ....|.|..+...|.+||
T Consensus 81 ~~~~~~-~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKS-NPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcC-CceEccCCcCHHHHHhhC
Confidence 988743 466899999999999986
No 12
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.78 E-value=1.6e-18 Score=130.24 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=93.9
Q ss_pred CCCeEEEeCccchhhhhcCCCcEEEEEEcCCChh--hh--cchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCC
Q 021468 158 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGH--CQ--AFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG 231 (312)
Q Consensus 158 ~~~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~--C~--~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~ 231 (312)
...|..|+.++|++.+.+...++|++||++||++ |+ .+.|.+.++|..+-...++.|+++|++.+.. .+|+|.+
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~ 87 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDE 87 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcc
Confidence 4578889999999999999999999999999987 99 8899999999988222269999999999877 8999999
Q ss_pred CceEEEEeCCCcccCceeeccCcCHHHHHHHHHhcC
Q 021468 232 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 267 (312)
Q Consensus 232 ~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 267 (312)
+||+++|++|+.+ .|.|.++.+.|.+||++..
T Consensus 88 iPTl~lfk~G~~v----~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 88 EDSIYVFKDDEVI----EYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccEEEEEECCEEE----EeeCCCCHHHHHHHHHHHh
Confidence 9999999999754 6999999999999998763
No 13
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.78 E-value=1.3e-18 Score=129.86 Aligned_cols=101 Identities=25% Similarity=0.500 Sum_probs=88.2
Q ss_pred CeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCC----CcEEEEEEeCCCccc--ccCCCCCCc
Q 021468 160 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV----DSIVIAKMDGTTNEH--HRAKSDGFP 233 (312)
Q Consensus 160 ~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~----~~v~~~~vd~~~~~~--~~~~i~~~P 233 (312)
.|..+++++|++.+ ..++.++|.||++||++|+.+.|.|.+++..+++. ..+.++.+||+.+.. .+|+|.++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 47789999999976 66789999999999999999999999999987542 259999999998866 789999999
Q ss_pred eEEEEeCCCcccCceeeccCcCHHHHHHHH
Q 021468 234 TILFFPAGNKSFDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 234 t~~~~~~g~~~~~~~~y~g~~~~~~l~~fi 263 (312)
++++|++|+.. ...|.|..+.+.|.+||
T Consensus 81 tl~~~~~g~~~--~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMM--KREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCc--ceecCCCCCHHHHHhhC
Confidence 99999999752 35899999999999986
No 14
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.2e-17 Score=151.30 Aligned_cols=209 Identities=16% Similarity=0.183 Sum_probs=157.9
Q ss_pred CCCceEEeCCCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC---eEEEEEEeCCCCccccchhhhhCCCC
Q 021468 29 KLPLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITG 104 (312)
Q Consensus 29 ~~~~v~~lt~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~~v~~ 104 (312)
.-..|..|+.++|..++..+...+|.||++| +||++++|.|.++|..+++ .+..++|||+. +..+|.+|+|++
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~---~~~~~~~y~v~g 99 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE---ESDLASKYEVRG 99 (493)
T ss_pred cccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch---hhhhHhhhcCCC
Confidence 3568899999999999999999999999999 9999999999999999986 58999999999 569999999999
Q ss_pred CCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeC-ccchhhhhcCCCcEEEE
Q 021468 105 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVG-NNFDEIVLDESKDVLLE 183 (312)
Q Consensus 105 ~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~~~~~~~~~s~~~~~~~~~~v~~l~~-~~f~~~i~~~~k~~lV~ 183 (312)
| ||+.+|++|.. +..|.|+++.+.|..|+.+... +.+..|.. +.....+ .....++|-
T Consensus 100 y--PTlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~g-----------------Pa~~~l~~~~~a~~~l-~~~~~~vig 158 (493)
T KOG0190|consen 100 Y--PTLKIFRNGRS-AQDYNGPREADGIVKWLKKQSG-----------------PASKTLKTVDEAEEFL-SKKDVVVIG 158 (493)
T ss_pred C--CeEEEEecCCc-ceeccCcccHHHHHHHHHhccC-----------------CCceecccHHHHHhhc-cCCceEEEE
Confidence 9 99999999975 6789999999999999999755 23344554 4444444 445666666
Q ss_pred EEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCC--CCCCceEEEEeCCCcccCceeeccCcCHHHHHH
Q 021468 184 IYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK--SDGFPTILFFPAGNKSFDPINVDVDRTVVALYK 261 (312)
Q Consensus 184 f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~--i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~ 261 (312)
|+...-+. ...+...|..+.+ .+.|+ +-.+.....++. ..+.|.+++++.... ....|.|..+.+.|.+
T Consensus 159 ~F~d~~~~----~~~~~~~a~~l~~--d~~F~-~ts~~~~~~~~~~~~~~~~~i~l~kk~d~--~~~~~~~~~~~~~l~~ 229 (493)
T KOG0190|consen 159 FFKDLESL----AESFFDAASKLRD--DYKFA-HTSDSDVAKKLELNTEGTFPIVLFKKFDE--LLVKYDGSFTPELLKK 229 (493)
T ss_pred Eecccccc----hHHHHHHHHhccc--cceee-ccCcHhHHhhccCCCCCcceEEecccccc--chhhcccccCHHHHHH
Confidence 66544332 1345556666655 58887 222322223333 334667788766554 3346788999999999
Q ss_pred HHHhcCCCC
Q 021468 262 FLKKNASIP 270 (312)
Q Consensus 262 fi~~~~~~~ 270 (312)
||..+.-+.
T Consensus 230 Fi~~~~~pl 238 (493)
T KOG0190|consen 230 FIQENSLPL 238 (493)
T ss_pred HHHHhcccc
Confidence 999986543
No 15
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.76 E-value=5.7e-18 Score=126.66 Aligned_cols=101 Identities=34% Similarity=0.655 Sum_probs=88.6
Q ss_pred eEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC--ccc--ccCCCCCCceEE
Q 021468 161 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEH--HRAKSDGFPTIL 236 (312)
Q Consensus 161 v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~--~~~--~~~~i~~~Pt~~ 236 (312)
|..++.++|.+.+.+.+++++|+||++||++|+.+.|.|.++++.+.+ .+.++.+|++. +.. .+|++.++|+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 678999999999988888999999999999999999999999999976 58899999998 433 689999999999
Q ss_pred EEeCCCcc--cCceeeccCcCHHHHHHHH
Q 021468 237 FFPAGNKS--FDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 237 ~~~~g~~~--~~~~~y~g~~~~~~l~~fi 263 (312)
+|++|..+ ..+..|.|..+.+.|.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHh
Confidence 99988631 1345899999999999998
No 16
>PRK09381 trxA thioredoxin; Provisional
Probab=99.75 E-value=1.5e-17 Score=124.41 Aligned_cols=104 Identities=25% Similarity=0.506 Sum_probs=93.6
Q ss_pred CCeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEE
Q 021468 159 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL 236 (312)
Q Consensus 159 ~~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~ 236 (312)
+.|+.+++++|.+.+.+.+++++|+||++||++|+.+.|.|.+++..+.+ .+.++.+|++.+.. .+|++.++|+++
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 46788999999998877789999999999999999999999999999987 58999999998876 689999999999
Q ss_pred EEeCCCcccCceeeccCcCHHHHHHHHHhcC
Q 021468 237 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA 267 (312)
Q Consensus 237 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 267 (312)
+|++|+.+. .+.|..+.+.|..||.+++
T Consensus 81 ~~~~G~~~~---~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGEVAA---TKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCCeEEE---EecCCCCHHHHHHHHHHhc
Confidence 999887754 7888889999999999875
No 17
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.74 E-value=1.1e-17 Score=123.41 Aligned_cols=98 Identities=26% Similarity=0.457 Sum_probs=84.8
Q ss_pred CeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEE
Q 021468 160 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 237 (312)
Q Consensus 160 ~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~ 237 (312)
.|..++.++|++.+. + .++|.||++||++|+.+.|.|.+++..++.. .+.++.+|++.+.. .+++|.++|++++
T Consensus 2 ~v~~l~~~~f~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVLE--G-EWMIEFYAPWCPACQQLQPEWEEFADWSDDL-GINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHhC--C-CEEEEEECCCCHHHHHHhHHHHHHHHhhccC-CeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 478899999998662 2 3899999999999999999999999987642 59999999998766 6899999999999
Q ss_pred EeCCCcccCceeeccCcCHHHHHHHHHh
Q 021468 238 FPAGNKSFDPINVDVDRTVVALYKFLKK 265 (312)
Q Consensus 238 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~ 265 (312)
|++|.. ..|.|..+.++|.+||++
T Consensus 78 ~~~g~~----~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDGVF----RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCCCE----EEecCCCCHHHHHHHHhC
Confidence 988863 379999999999999974
No 18
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8e-18 Score=141.47 Aligned_cols=106 Identities=27% Similarity=0.506 Sum_probs=98.3
Q ss_pred CCeEEEeCccchhhhhcC--CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCce
Q 021468 159 GDVKIVVGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT 234 (312)
Q Consensus 159 ~~v~~l~~~~f~~~i~~~--~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt 234 (312)
..|+.+|..+|...+... .++|||+||+|||++|+.+.|.++.++..+++ .+.+++|||+.... ..|+|+++|+
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCe
Confidence 448999999999988543 46999999999999999999999999999999 69999999999988 7999999999
Q ss_pred EEEEeCCCcccCceeeccCcCHHHHHHHHHhcCCC
Q 021468 235 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 269 (312)
Q Consensus 235 ~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~ 269 (312)
++.|++|+.++ .|.|....+.|.+|+..+++.
T Consensus 101 V~af~dGqpVd---gF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 101 VYAFKDGQPVD---GFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEEeeCCcCcc---ccCCCCcHHHHHHHHHHhcCh
Confidence 99999999988 999999999999999999876
No 19
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.74 E-value=1.5e-17 Score=123.04 Aligned_cols=99 Identities=35% Similarity=0.670 Sum_probs=89.2
Q ss_pred eEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 021468 161 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF 238 (312)
Q Consensus 161 v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~ 238 (312)
|..+++.+|.+.+.+.+++++|+||++||++|+.+.|.|.++++.+.+ .+.++.+|++.+.. .+++|.++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 567889999998877777899999999999999999999999999876 59999999998876 78999999999999
Q ss_pred eCCCcccCceeeccCcCHHHHHHHH
Q 021468 239 PAGNKSFDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 239 ~~g~~~~~~~~y~g~~~~~~l~~fi 263 (312)
++|.. .+..|.|..+.+.|.+|+
T Consensus 80 ~~~~~--~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKN--SPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCc--ceeecCCCCCHHHHHHHh
Confidence 98844 467899999999999997
No 20
>PTZ00102 disulphide isomerase; Provisional
Probab=99.74 E-value=1.6e-16 Score=149.22 Aligned_cols=226 Identities=15% Similarity=0.198 Sum_probs=168.0
Q ss_pred CceEEeCCCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcC---CeEEEEEEeCCCCccccchhhhhCCCCCC
Q 021468 31 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK---GKLIFVYVQMDNEDVGKPVSEYFGITGEA 106 (312)
Q Consensus 31 ~~v~~lt~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~---~~i~f~~vd~~~~~~~~~l~~~~~v~~~~ 106 (312)
..+..++.++|+..+..+..++|.||++| ++|+++.|.|.++|..+. ..+.|+.|||+. ++.+|++|+|.++
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~---~~~l~~~~~i~~~- 107 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE---EMELAQEFGVRGY- 107 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC---CHHHHHhcCCCcc-
Confidence 46789999999999988888999999999 999999999999998875 359999999998 6699999999999
Q ss_pred CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCC--------------------CC--------------
Q 021468 107 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKS--------------------DP-------------- 152 (312)
Q Consensus 107 ~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~~~~~~~~~s--------------------~~-------------- 152 (312)
|++.+|++|.. ..|.|.++.+.|.+|+.+.+...+...-.. ..
T Consensus 108 -Pt~~~~~~g~~--~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~ 184 (477)
T PTZ00102 108 -PTIKFFNKGNP--VNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKH 184 (477)
T ss_pred -cEEEEEECCce--EEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhc
Confidence 99999998863 378999999999999999875433211000 00
Q ss_pred -------------------------CCC----------------CCCCCeEEEeCccchhhhhcCCCcEEEEEEcCCChh
Q 021468 153 -------------------------IPE----------------TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGH 191 (312)
Q Consensus 153 -------------------------~~~----------------~~~~~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~ 191 (312)
... ..-+.+..++.++|.... ..+..+++++ ..|..
T Consensus 185 ~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~ 261 (477)
T PTZ00102 185 REHAKFFVKKHEGKNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYI-SSGKDLVWFC--GTTED 261 (477)
T ss_pred cccceEEEEcCCCCCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHh-cCCccEEEEe--cCHHH
Confidence 000 001234555666665544 3344333333 24566
Q ss_pred hhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCCCceEEEEeCCCcccCceeecc----CcCHHHHHHHHH
Q 021468 192 CQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILFFPAGNKSFDPINVDV----DRTVVALYKFLK 264 (312)
Q Consensus 192 C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~i~~~Pt~~~~~~g~~~~~~~~y~g----~~~~~~l~~fi~ 264 (312)
...+.+.+.++|+.+++ .+.|+.+|++.... ..+++..+|++.+...+.+. .+.+ ..+.+.|.+|++
T Consensus 262 ~~~~~~~~~~~A~~~~~--~~~f~~vd~~~~~~~~~~~~gi~~~P~~~i~~~~~~y----~~~~~~~~~~~~~~l~~Fv~ 335 (477)
T PTZ00102 262 YDKYKSVVRKVARKLRE--KYAFVWLDTEQFGSHAKEHLLIEEFPGLAYQSPAGRY----LLPPAKESFDSVEALIEFFK 335 (477)
T ss_pred HHHHHHHHHHHHHhccC--ceEEEEEechhcchhHHHhcCcccCceEEEEcCCccc----CCCccccccCCHHHHHHHHH
Confidence 67788999999999988 58999999998653 58899999998887633221 2333 267999999999
Q ss_pred hcCCCCcc
Q 021468 265 KNASIPFK 272 (312)
Q Consensus 265 ~~~~~~~~ 272 (312)
+....+..
T Consensus 336 ~~~~gk~~ 343 (477)
T PTZ00102 336 DVEAGKVE 343 (477)
T ss_pred HHhCCCCC
Confidence 98765444
No 21
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.72 E-value=3.5e-17 Score=122.33 Aligned_cols=101 Identities=32% Similarity=0.677 Sum_probs=86.0
Q ss_pred CeEEEeCccchhhhh--cCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCc-cc--c-cCCCCCCc
Q 021468 160 DVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-EH--H-RAKSDGFP 233 (312)
Q Consensus 160 ~v~~l~~~~f~~~i~--~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-~~--~-~~~i~~~P 233 (312)
.|..++.++|+..+. +++++++|.||++||++|+.+.|.|.+++..+++. ++.++.+|++.. .. . .+++.++|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~-~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS-NVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECCccchhhHHhhcCCCcCC
Confidence 367899999999874 45789999999999999999999999999999852 599999999873 32 3 58999999
Q ss_pred eEEEEeCCCcccCceeeccC-cCHHHHHHHH
Q 021468 234 TILFFPAGNKSFDPINVDVD-RTVVALYKFL 263 (312)
Q Consensus 234 t~~~~~~g~~~~~~~~y~g~-~~~~~l~~fi 263 (312)
|+++|++|.. .+..|.|. ++.+.|..||
T Consensus 81 ti~~f~~~~~--~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSR--QPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCC--CceeccCCCCCHHHHHhhC
Confidence 9999988765 46689994 8999999885
No 22
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.72 E-value=2e-17 Score=123.93 Aligned_cols=99 Identities=19% Similarity=0.395 Sum_probs=84.6
Q ss_pred EEeCccchhhhhc--CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 021468 163 IVVGNNFDEIVLD--ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF 238 (312)
Q Consensus 163 ~l~~~~f~~~i~~--~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~ 238 (312)
.++.++|.+.+.. .+++++|+||++||++|+.+.|.|.++++.+.+. ++.++.+|++.+.. .+++|.++|++++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 3566778765543 5799999999999999999999999999999763 58999999988765 78999999999999
Q ss_pred eCCCcccCceeeccCcCHHHHHHHHHh
Q 021468 239 PAGNKSFDPINVDVDRTVVALYKFLKK 265 (312)
Q Consensus 239 ~~g~~~~~~~~y~g~~~~~~l~~fi~~ 265 (312)
++|+... .+.|..+.+.|.+||++
T Consensus 87 ~~g~~~~---~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 INGQVTF---YHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECCEEEE---EecCCCCHHHHHHHHhc
Confidence 9887643 67788899999999976
No 23
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.72 E-value=3.4e-17 Score=120.88 Aligned_cols=98 Identities=33% Similarity=0.664 Sum_probs=85.2
Q ss_pred eEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcC-CCcEEEEEEeCCCccc--ccCCCCCCceEEE
Q 021468 161 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTTNEH--HRAKSDGFPTILF 237 (312)
Q Consensus 161 v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~-~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~ 237 (312)
+..+++++|.+.+.+ +.++|.||++||++|+.+.|.|.+++..+++ ...+.++.+|++.+.. .+|++.++|++++
T Consensus 2 ~~~l~~~~f~~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE--GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 567889999998843 3599999999999999999999999999976 3369999999998765 7899999999999
Q ss_pred EeCCCcccCceeeccCcCHHHHHHHH
Q 021468 238 FPAGNKSFDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 238 ~~~g~~~~~~~~y~g~~~~~~l~~fi 263 (312)
|++|.... .|.|..+.+.|.+||
T Consensus 80 ~~~g~~~~---~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVD---KYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeee---EeeCCCCHHHHHhhC
Confidence 99887543 899999999998885
No 24
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.72 E-value=3.4e-17 Score=120.73 Aligned_cols=100 Identities=14% Similarity=0.184 Sum_probs=90.9
Q ss_pred CceEEeCCCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcE
Q 021468 31 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 109 (312)
Q Consensus 31 ~~v~~lt~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~ 109 (312)
|.+.+++.++|+..+..+..++|.||++| ++|+.+.|.|.++|+.+++.+.|+.|||++ ++.+|++++|.++ |+
T Consensus 1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--Pt 75 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD---DRMLCRSQGVNSY--PS 75 (101)
T ss_pred CCeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc---cHHHHHHcCCCcc--CE
Confidence 46789999999999988888999999999 999999999999999999999999999998 6699999999999 99
Q ss_pred EEEEcCCCCceeccCCCCCHHHHHHHH
Q 021468 110 LAYTGNDDAKKHILDGELTLDKIKTFG 136 (312)
Q Consensus 110 ~~~~~~~~~~~~~~~g~~~~~~i~~fi 136 (312)
+++|.+|. ....|.|.++.+.|.+|+
T Consensus 76 ~~~~~~g~-~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 76 LYVFPSGM-NPEKYYGDRSKESLVKFA 101 (101)
T ss_pred EEEEcCCC-CcccCCCCCCHHHHHhhC
Confidence 99998775 356789999999999874
No 25
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.71 E-value=7.3e-17 Score=119.67 Aligned_cols=101 Identities=44% Similarity=0.864 Sum_probs=88.5
Q ss_pred eEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC-ccc--ccCCCCCCceEEE
Q 021468 161 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-NEH--HRAKSDGFPTILF 237 (312)
Q Consensus 161 v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-~~~--~~~~i~~~Pt~~~ 237 (312)
+..+++++|+..+.+.+++++|+||++||++|+.+.+.|..+++.+.....+.++.+|++. +.. .++++.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 5678899999988767779999999999999999999999999999854479999999999 654 7899999999999
Q ss_pred EeCCCcccCceeeccCcCHHHHHHHH
Q 021468 238 FPAGNKSFDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 238 ~~~g~~~~~~~~y~g~~~~~~l~~fi 263 (312)
|..|.. ....|.|..+.+.|.+||
T Consensus 82 ~~~~~~--~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGST--EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCC--CccccCCccCHHHHHhhC
Confidence 988754 355899999999999885
No 26
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.71 E-value=5.9e-17 Score=119.51 Aligned_cols=100 Identities=48% Similarity=0.953 Sum_probs=88.3
Q ss_pred EeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCC
Q 021468 164 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAG 241 (312)
Q Consensus 164 l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g 241 (312)
|++++|++.+. .++.++|+||++||++|+.+.+.|..++..+.+..++.++.+|++.+.. .+|++.++|++++|++|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 45678888775 7899999999999999999999999999999875569999999998876 78999999999999988
Q ss_pred CcccCceeeccCcCHHHHHHHHHhcC
Q 021468 242 NKSFDPINVDVDRTVVALYKFLKKNA 267 (312)
Q Consensus 242 ~~~~~~~~y~g~~~~~~l~~fi~~~~ 267 (312)
.. +..|.|..+.+.|..||.+++
T Consensus 80 ~~---~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 80 KK---PVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred Cc---ceeecCCCCHHHHHHHHHhcC
Confidence 65 348999999999999999864
No 27
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.71 E-value=6.4e-17 Score=118.10 Aligned_cols=92 Identities=21% Similarity=0.416 Sum_probs=81.5
Q ss_pred cchhhhhcC-CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcc
Q 021468 168 NFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKS 244 (312)
Q Consensus 168 ~f~~~i~~~-~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~ 244 (312)
+|++.+... +++++|.||++||++|+.+.|.+.+++..+.+ .+.++.+|++.+.. .+|++.++|++++|++|+.+
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 677777555 68999999999999999999999999999976 58999999999876 78999999999999988765
Q ss_pred cCceeeccCcCHHHHHHHHH
Q 021468 245 FDPINVDVDRTVVALYKFLK 264 (312)
Q Consensus 245 ~~~~~y~g~~~~~~l~~fi~ 264 (312)
. .+.|..+.+.|..||.
T Consensus 80 ~---~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 80 D---GFQGAQPEEQLRQMLD 96 (96)
T ss_pred e---eecCCCCHHHHHHHhC
Confidence 4 7899999999999873
No 28
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.70 E-value=4.5e-16 Score=145.62 Aligned_cols=216 Identities=17% Similarity=0.211 Sum_probs=157.5
Q ss_pred ceEEeCCCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC---eEEEEEEeCCCCccccchhhhhCCCCCCC
Q 021468 32 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAP 107 (312)
Q Consensus 32 ~v~~lt~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~~v~~~~~ 107 (312)
.|..++.++|+..+..+..++|.||++| ++|+.+.|.|.++|..+.+ .+.|+.|||+. ++.+|+++||.++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---~~~l~~~~~i~~~-- 76 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE---EKDLAQKYGVSGY-- 76 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC---cHHHHHhCCCccc--
Confidence 4678999999999998888899999999 9999999999999998874 49999999998 6699999999999
Q ss_pred cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEe-CccchhhhhcCCCcEEEEEEc
Q 021468 108 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVV-GNNFDEIVLDESKDVLLEIYA 186 (312)
Q Consensus 108 P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~~~~~~~~~s~~~~~~~~~~v~~l~-~~~f~~~i~~~~k~~lV~f~~ 186 (312)
|++.++.+|......|.|.++.++|.+|+.+.+. ..+..++ .++++..+.. ....+|.|+.
T Consensus 77 Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~-----------------~~~~~i~~~~~~~~~~~~-~~~~vi~~~~ 138 (462)
T TIGR01130 77 PTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSG-----------------PAVKEIETVADLEAFLAD-DDVVVIGFFK 138 (462)
T ss_pred cEEEEEeCCccceeEecCCCCHHHHHHHHHHhcC-----------------CCceeecCHHHHHHHHhc-CCcEEEEEEC
Confidence 9999998876424678999999999999999865 2344554 4677776644 5666777765
Q ss_pred CCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeeccCc--CHHHHHHHHH
Q 021468 187 PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDR--TVVALYKFLK 264 (312)
Q Consensus 187 ~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~--~~~~l~~fi~ 264 (312)
. .. ......+.++|..+... ..+.....+......++.. .|++.+|...........|.|.. +.+.|..||+
T Consensus 139 ~-~~--~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~ 212 (462)
T TIGR01130 139 D-LD--SELNDTFLSVAEKLRDV--YFFFAHSSDVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIR 212 (462)
T ss_pred C-CC--cHHHHHHHHHHHHhhhc--cceEEecCCHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHH
Confidence 4 11 35667888999988773 3322222222222445543 36666665433321223577754 5689999999
Q ss_pred hcCCCCccccCC
Q 021468 265 KNASIPFKIQKP 276 (312)
Q Consensus 265 ~~~~~~~~~~~~ 276 (312)
.+..+.+....+
T Consensus 213 ~~~~p~v~~~~~ 224 (462)
T TIGR01130 213 AESLPLVGEFTQ 224 (462)
T ss_pred HcCCCceEeeCC
Confidence 987765554433
No 29
>PHA02278 thioredoxin-like protein
Probab=99.70 E-value=3.8e-17 Score=119.96 Aligned_cols=90 Identities=13% Similarity=0.218 Sum_probs=76.2
Q ss_pred ccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc----c--ccCCCCCCceEEEEeC
Q 021468 167 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----H--HRAKSDGFPTILFFPA 240 (312)
Q Consensus 167 ~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~--~~~~i~~~Pt~~~~~~ 240 (312)
++|.+.+ ..+++++|+|||+||++|+.|.|.+.+++..+.. .+.|+.+|++.+. . .+|+|.++||+++|++
T Consensus 5 ~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~ 81 (103)
T PHA02278 5 VDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD 81 (103)
T ss_pred HHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEEC
Confidence 5677766 5789999999999999999999999999987544 4678888988752 2 7899999999999999
Q ss_pred CCcccCceeeccCcCHHHHHHH
Q 021468 241 GNKSFDPINVDVDRTVVALYKF 262 (312)
Q Consensus 241 g~~~~~~~~y~g~~~~~~l~~f 262 (312)
|+.+. ++.|..+.+.|.++
T Consensus 82 G~~v~---~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 GQLVK---KYEDQVTPMQLQEL 100 (103)
T ss_pred CEEEE---EEeCCCCHHHHHhh
Confidence 98876 78888888887765
No 30
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.70 E-value=7.3e-17 Score=120.41 Aligned_cols=101 Identities=12% Similarity=0.039 Sum_probs=90.0
Q ss_pred CCceEEeCCCccccc---ccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchh-hhhCCCC
Q 021468 30 LPLVTIFTRENAPSV---FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS-EYFGITG 104 (312)
Q Consensus 30 ~~~v~~lt~~~~~~~---~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~-~~~~v~~ 104 (312)
.+.|.+|++++|++. ...+..++|.||++| ++|+.+.|.|+++|+++++.+.|+.|||+. +..+| ++|+|.+
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~---~~~l~~~~~~I~~ 84 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW---PQGKCRKQKHFFY 84 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC---ChHHHHHhcCCcc
Confidence 467899999999986 577888899999999 999999999999999999999999999998 55899 5899999
Q ss_pred CCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021468 105 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 136 (312)
Q Consensus 105 ~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi 136 (312)
+ |++.+|.+|. ....|.|.++.+.|..|+
T Consensus 85 ~--PTl~lf~~g~-~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 F--PVIHLYYRSR-GPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred c--CEEEEEECCc-cceEEeCCCCHHHHHhhC
Confidence 9 9999998775 457789999999998873
No 31
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.70 E-value=5e-17 Score=135.33 Aligned_cols=106 Identities=27% Similarity=0.583 Sum_probs=92.4
Q ss_pred CCCeEEEeCccchhhhhcC----CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCC
Q 021468 158 DGDVKIVVGNNFDEIVLDE----SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG 231 (312)
Q Consensus 158 ~~~v~~l~~~~f~~~i~~~----~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~ 231 (312)
.+.+..++.++|++.+... +++++|+||++||++|+.+.|.|.++++.+++ .+.++.+|++.+.. .+|+|.+
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCc
Confidence 3578999999999987543 57899999999999999999999999999987 59999999998866 7899999
Q ss_pred CceEEEEeCCCcccCceeeccCcCHHHHHHHHHhcCC
Q 021468 232 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 268 (312)
Q Consensus 232 ~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 268 (312)
+|++++|++|+... .+.|..+.+.|.+|+.++..
T Consensus 107 ~PTl~~f~~G~~v~---~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 107 YPTLLLFDKGKMYQ---YEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred CCEEEEEECCEEEE---eeCCCCCHHHHHHHHHHHHH
Confidence 99999999887642 34578999999999999964
No 32
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.69 E-value=2.9e-17 Score=121.48 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=68.7
Q ss_pred ccchhhhhc-CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 021468 167 NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK 243 (312)
Q Consensus 167 ~~f~~~i~~-~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~ 243 (312)
++|++.+.. .+++++|.||++||++|+.|.|.|.+++.++.+ .+.|+++|++.+.. .+|+|.++||+++|++|+.
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEE
Confidence 566776753 578899999999999999999999999999976 58999999999987 7899999999999999988
Q ss_pred cc
Q 021468 244 SF 245 (312)
Q Consensus 244 ~~ 245 (312)
+.
T Consensus 81 v~ 82 (114)
T cd02954 81 MK 82 (114)
T ss_pred EE
Confidence 74
No 33
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.69 E-value=1e-16 Score=117.64 Aligned_cols=82 Identities=26% Similarity=0.484 Sum_probs=72.2
Q ss_pred cCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCC-Cccc--ccCCCCCCceEEEEeCCCcccCceeec
Q 021468 175 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH--HRAKSDGFPTILFFPAGNKSFDPINVD 251 (312)
Q Consensus 175 ~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~ 251 (312)
..++.++|.||++||++|+.+.|.|+++++.+++ +.++.+|.+ .+.. .+|+|.++||+++|++| .. ..|.
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~---~~~~ 88 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PR---VRYN 88 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ce---eEec
Confidence 4678999999999999999999999999999865 778889987 4544 78999999999999988 44 3899
Q ss_pred cCcCHHHHHHHH
Q 021468 252 VDRTVVALYKFL 263 (312)
Q Consensus 252 g~~~~~~l~~fi 263 (312)
|..+.+.|.+||
T Consensus 89 G~~~~~~l~~f~ 100 (100)
T cd02999 89 GTRTLDSLAAFY 100 (100)
T ss_pred CCCCHHHHHhhC
Confidence 999999999985
No 34
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.5e-16 Score=142.44 Aligned_cols=228 Identities=23% Similarity=0.377 Sum_probs=171.4
Q ss_pred CccccccCCCCHHHHHHHHHhcCCCc--------eEEeCCCcccccc-cCCCccEEEEEeeC-CchhhHHHHHHHHHHHc
Q 021468 7 EKISYFDGKFDKSTIADFVFSNKLPL--------VTIFTRENAPSVF-ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSF 76 (312)
Q Consensus 7 ~~~~~y~g~~~~~~l~~fi~~~~~~~--------v~~lt~~~~~~~~-~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~ 76 (312)
..++.|+|..+...+..|+.....+. +.+++..+|...+ .....+++.||++| ++|+.+.|.|++++..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~ 191 (383)
T KOG0191|consen 112 KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLL 191 (383)
T ss_pred CceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHh
Confidence 67899999999999999998866553 5566666666543 34556889999999 99999999999999999
Q ss_pred C--CeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 021468 77 K--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIP 154 (312)
Q Consensus 77 ~--~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~~~~~~~~~s~~~~ 154 (312)
+ +.+.++.+||+. +..+|..++|+++ |++.+|..+....+.+.|.++.+.|..|+.+........ ..+.
T Consensus 192 ~~~~~v~~~~~d~~~---~~~~~~~~~v~~~--Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~----~~~~ 262 (383)
T KOG0191|consen 192 KSKENVELGKIDATV---HKSLASRLEVRGY--PTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPE----PELK 262 (383)
T ss_pred ccCcceEEEeeccch---HHHHhhhhcccCC--ceEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCC----cccc
Confidence 6 579999999996 7799999999999 999999988752456688999999999999987643111 1111
Q ss_pred CCCCC---CeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHH-hcCCCcEEEEEEeCCCccc--ccCC
Q 021468 155 ETNDG---DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH-LRGVDSIVIAKMDGTTNEH--HRAK 228 (312)
Q Consensus 155 ~~~~~---~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~-~~~~~~v~~~~vd~~~~~~--~~~~ 228 (312)
+.... ....+..++|.. .......+++.|+++||.+|....+.+...+.. +.....+.+.+++|..... ....
T Consensus 263 ~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 341 (383)
T KOG0191|consen 263 EIEDKDTFSPTFLDTAEFLD-SLEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDCALLKSLCQKAI 341 (383)
T ss_pred cccCccccccchhhhhhhhh-hhHHhhhhHhhhhcchhhcccccchhHHHHHhccccccccceeeccccccccchhhHhh
Confidence 11111 000111122222 122446789999999999999999999999998 2223368888888887665 5667
Q ss_pred CCCCceEEEEeCCCcc
Q 021468 229 SDGFPTILFFPAGNKS 244 (312)
Q Consensus 229 i~~~Pt~~~~~~g~~~ 244 (312)
++.+|++.++..+...
T Consensus 342 ~~~~~~~~~~~~~~~~ 357 (383)
T KOG0191|consen 342 VRGYPTIKLYNYGKNP 357 (383)
T ss_pred hhcCceeEeecccccc
Confidence 8899999999887654
No 35
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.68 E-value=3e-16 Score=116.22 Aligned_cols=99 Identities=30% Similarity=0.631 Sum_probs=85.2
Q ss_pred eEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC--ccc--ccCCCCCCceEE
Q 021468 161 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEH--HRAKSDGFPTIL 236 (312)
Q Consensus 161 v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~--~~~--~~~~i~~~Pt~~ 236 (312)
|..++..+|++.+ ..++.++|+||++||++|+.+.+.+..++..+.....+.++.+|++. +.. .++++.++|+++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 5678889999877 45669999999999999999999999999999754468999999988 443 689999999999
Q ss_pred EEeCCCcccCceeeccCcCHHHHHHHH
Q 021468 237 FFPAGNKSFDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 237 ~~~~g~~~~~~~~y~g~~~~~~l~~fi 263 (312)
+|++|+... .|.|..+.+.|.+||
T Consensus 81 ~~~~g~~~~---~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVE---KYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeE---EeCCCCCHHHHHhhC
Confidence 999887543 899999999998885
No 36
>PRK10996 thioredoxin 2; Provisional
Probab=99.67 E-value=3.8e-16 Score=121.65 Aligned_cols=104 Identities=23% Similarity=0.557 Sum_probs=91.2
Q ss_pred CCCeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceE
Q 021468 158 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI 235 (312)
Q Consensus 158 ~~~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~ 235 (312)
...+..++..+|++.+ +.++.++|+||++||++|+.+.+.|.+++..+.+ ++.++.+|++.+.. .+|+|.++|++
T Consensus 34 ~~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 34 DGEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CCCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 3456678889999866 5689999999999999999999999999998876 69999999998776 78999999999
Q ss_pred EEEeCCCcccCceeeccCcCHHHHHHHHHhcC
Q 021468 236 LFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 267 (312)
Q Consensus 236 ~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 267 (312)
++|++|+.+. .+.|..+.+.|.+||++++
T Consensus 111 ii~~~G~~v~---~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 111 MIFKNGQVVD---MLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEECCEEEE---EEcCCCCHHHHHHHHHHhC
Confidence 9999888764 7789899999999998763
No 37
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.66 E-value=2.8e-16 Score=116.59 Aligned_cols=98 Identities=22% Similarity=0.325 Sum_probs=78.7
Q ss_pred eEEEeCccchhhhhcCCCcEEEEEEc--CCCh---hhhcchHHHHHHHHHhcCCCcEEEEEEeCCC-----cc--cccCC
Q 021468 161 VKIVVGNNFDEIVLDESKDVLLEIYA--PWCG---HCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----NE--HHRAK 228 (312)
Q Consensus 161 v~~l~~~~f~~~i~~~~k~~lV~f~~--~~C~---~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----~~--~~~~~ 228 (312)
+..|+..+|++.| ...+.+||.||+ |||+ +|+.++|.+...+. .+.++.|||+. +. +.+|+
T Consensus 3 ~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y~ 75 (116)
T cd03007 3 CVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERYK 75 (116)
T ss_pred eeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHhC
Confidence 6779999999977 567889999999 8888 66555555544432 48999999953 32 27899
Q ss_pred CC--CCceEEEEeCCCcccCceeeccC-cCHHHHHHHHHhc
Q 021468 229 SD--GFPTILFFPAGNKSFDPINVDVD-RTVVALYKFLKKN 266 (312)
Q Consensus 229 i~--~~Pt~~~~~~g~~~~~~~~y~g~-~~~~~l~~fi~~~ 266 (312)
|+ ++||+++|++|... .++.|.|. ++.+.|.+||+++
T Consensus 76 I~~~gyPTl~lF~~g~~~-~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 LDKESYPVIYLFHGGDFE-NPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCcCCCCEEEEEeCCCcC-CCccCCCCcccHHHHHHHHHhc
Confidence 99 99999999998543 46799996 9999999999987
No 38
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.66 E-value=3.1e-16 Score=116.21 Aligned_cols=101 Identities=22% Similarity=0.241 Sum_probs=89.0
Q ss_pred CceEEeCCCccccccc-CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCc
Q 021468 31 PLVTIFTRENAPSVFE-SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK 108 (312)
Q Consensus 31 ~~v~~lt~~~~~~~~~-~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P 108 (312)
+.+.+++.++|++.+. .+.+++|.||++| ++|+.+.|.|.+++.++.+.+.|+.|||+. ++.+|+.++|.++ |
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~i~~~--P 75 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK---YESLCQQANIRAY--P 75 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc---hHHHHHHcCCCcc--c
Confidence 3577899999998754 4557888899999 999999999999999999889999999998 6699999999999 9
Q ss_pred EEEEEcCCCCceeccCCCCC-HHHHHHHH
Q 021468 109 VLAYTGNDDAKKHILDGELT-LDKIKTFG 136 (312)
Q Consensus 109 ~~~~~~~~~~~~~~~~g~~~-~~~i~~fi 136 (312)
++++|.+|+.....|.|..+ .++|.+|+
T Consensus 76 t~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 76 TIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 99999988556778999887 99999885
No 39
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.66 E-value=3.6e-16 Score=116.67 Aligned_cols=100 Identities=23% Similarity=0.298 Sum_probs=89.3
Q ss_pred ceEEeCCCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcC------CeEEEEEEeCCCCccccchhhhhCCCC
Q 021468 32 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK------GKLIFVYVQMDNEDVGKPVSEYFGITG 104 (312)
Q Consensus 32 ~v~~lt~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~------~~i~f~~vd~~~~~~~~~l~~~~~v~~ 104 (312)
.+.++++++|++.+..++.++|.||++| ++|+++.|.|+++|..++ +.+.|+.|||+. ++.+|++|||++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~---~~~l~~~~~v~~ 78 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK---ESDIADRYRINK 78 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC---CHHHHHhCCCCc
Confidence 4678999999999988888889999999 999999999999998864 259999999998 569999999999
Q ss_pred CCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021468 105 EAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 136 (312)
Q Consensus 105 ~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi 136 (312)
+ |++.+|.+|......|.|.++.++|.+||
T Consensus 79 ~--Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 79 Y--PTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred C--CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9 99999988874567889999999999985
No 40
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.65 E-value=4.8e-16 Score=114.87 Aligned_cols=93 Identities=23% Similarity=0.280 Sum_probs=77.0
Q ss_pred CccchhhhhcC-CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc---c--ccCCCCCCceEEEEe
Q 021468 166 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---H--HRAKSDGFPTILFFP 239 (312)
Q Consensus 166 ~~~f~~~i~~~-~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~---~--~~~~i~~~Pt~~~~~ 239 (312)
.++|++.+... +++++|.||++||++|+.+.|.|.+++..+ . .+.|+.+|++.+. . .+|+|.++||+++|+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~--~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N--DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C--CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 35677777544 789999999999999999999999999998 3 5899999998874 2 689999999999999
Q ss_pred CCCcccCceeeccCcCHHHHHHHHHh
Q 021468 240 AGNKSFDPINVDVDRTVVALYKFLKK 265 (312)
Q Consensus 240 ~g~~~~~~~~y~g~~~~~~l~~fi~~ 265 (312)
+|+.+. .+.| .....|.+-+..
T Consensus 80 ~G~~v~---~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 80 DGEKIH---EEEG-IGPDELIGDVLY 101 (103)
T ss_pred CCeEEE---EEeC-CCHHHHHHHHHh
Confidence 998765 7888 456777766654
No 41
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.65 E-value=4.3e-16 Score=115.03 Aligned_cols=101 Identities=19% Similarity=0.322 Sum_probs=92.0
Q ss_pred eEEeCCCcccccccC-CCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEE
Q 021468 33 VTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL 110 (312)
Q Consensus 33 v~~lt~~~~~~~~~~-~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~ 110 (312)
|..+|.++|+..+.. ...++|+||++| ++|+.+.|.|.++++.+.+.+.|+.|||++ ++.+|++|+|.++ |++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~---~~~l~~~~~v~~~--Pt~ 75 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE---NKELCKKYGVKSV--PTI 75 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT---SHHHHHHTTCSSS--SEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhc---cchhhhccCCCCC--CEE
Confidence 467999999998887 888889999999 999999999999999999889999999998 6799999999999 999
Q ss_pred EEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021468 111 AYTGNDDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 111 ~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
+++.+|... ..+.|.++.++|.+||+++
T Consensus 76 ~~~~~g~~~-~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 76 IFFKNGKEV-KRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEETTEEE-EEEESSSSHHHHHHHHHHH
T ss_pred EEEECCcEE-EEEECCCCHHHHHHHHHcC
Confidence 999988744 3788999999999999874
No 42
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.65 E-value=6.9e-16 Score=113.46 Aligned_cols=98 Identities=30% Similarity=0.562 Sum_probs=85.5
Q ss_pred eCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCC
Q 021468 165 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN 242 (312)
Q Consensus 165 ~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~ 242 (312)
+.++|.+.+.+.++.++|+||++||+.|+.+.+.+.+++..+.+ .+.|+.+|++.+.. .+|++.++|++++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 45678887766678999999999999999999999999998875 59999999998876 789999999999999887
Q ss_pred cccCceeeccCcCHHHHHHHHHhcC
Q 021468 243 KSFDPINVDVDRTVVALYKFLKKNA 267 (312)
Q Consensus 243 ~~~~~~~y~g~~~~~~l~~fi~~~~ 267 (312)
... .+.|..+.+.|.+||++++
T Consensus 80 ~~~---~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 80 EVD---RSVGALPKAALKQLINKNL 101 (101)
T ss_pred Eee---eecCCCCHHHHHHHHHhhC
Confidence 653 6778888999999998763
No 43
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.65 E-value=1.1e-15 Score=112.30 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=83.2
Q ss_pred eEEEeCccchhhhhcCCCcEEEEEEcCC--ChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEE
Q 021468 161 VKIVVGNNFDEIVLDESKDVLLEIYAPW--CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL 236 (312)
Q Consensus 161 v~~l~~~~f~~~i~~~~k~~lV~f~~~~--C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~ 236 (312)
.-.++..+|++.+ ..+..++|+||++| |++|+.+.|.|.++++++.+ .+.|+.+|++.+.. .+|+|.++||++
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 4458899999877 67899999999997 99999999999999999987 58999999999876 789999999999
Q ss_pred EEeCCCcccCceeeccCcCHHHHH
Q 021468 237 FFPAGNKSFDPINVDVDRTVVALY 260 (312)
Q Consensus 237 ~~~~g~~~~~~~~y~g~~~~~~l~ 260 (312)
+|++|+.+. .+.|..+.+++.
T Consensus 89 ~fkdGk~v~---~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDGRYVG---VLAGIRDWDEYV 109 (111)
T ss_pred EEECCEEEE---EEeCccCHHHHh
Confidence 999998876 778887777664
No 44
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.64 E-value=8.3e-16 Score=113.40 Aligned_cols=96 Identities=20% Similarity=0.413 Sum_probs=79.7
Q ss_pred EeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCCCceEEEEeCCC
Q 021468 164 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGN 242 (312)
Q Consensus 164 l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~i~~~Pt~~~~~~g~ 242 (312)
-+.++|...+ +.+++++|+||++||++|+.+.|.+..++..+.+. .+.|+.+|++.... .+|+|.++|++++|++|+
T Consensus 5 ~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~-~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 5 NNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD-LLHFATAEADTIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred cCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC-cEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCE
Confidence 3557788866 57889999999999999999999999999998752 48899999883333 799999999999999998
Q ss_pred cccCceeeccCcCHHHHHHHHHh
Q 021468 243 KSFDPINVDVDRTVVALYKFLKK 265 (312)
Q Consensus 243 ~~~~~~~y~g~~~~~~l~~fi~~ 265 (312)
.+. +..| .+...|.++|.+
T Consensus 83 ~~~---~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 83 LVA---VIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEE---EEec-CChHHHHHHHhh
Confidence 764 5666 477889888865
No 45
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.64 E-value=4.1e-15 Score=124.26 Aligned_cols=183 Identities=13% Similarity=0.145 Sum_probs=130.8
Q ss_pred cCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC---eEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCcee
Q 021468 46 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKH 121 (312)
Q Consensus 46 ~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~ 121 (312)
+....|+|-||++| ++|+++.|+|.++..++++ -|.++++||+. .+.++.+|||++| |++.+++++. .+
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~---f~aiAnefgiqGY--PTIk~~kgd~--a~ 113 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATR---FPAIANEFGIQGY--PTIKFFKGDH--AI 113 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeeccccccc---chhhHhhhccCCC--ceEEEecCCe--ee
Confidence 34458899999999 9999999999999999986 49999999999 6699999999999 9999998875 77
Q ss_pred ccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCc-cchhhhhcCCCcEEEEEEcCCChhhhcchHHHH
Q 021468 122 ILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGN-NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYN 200 (312)
Q Consensus 122 ~~~g~~~~~~i~~fi~~~l~~~~~~~~~s~~~~~~~~~~v~~l~~~-~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~ 200 (312)
.|.|+++.+.|..|..+..+ ..+..++.. ...+.+....++..|+|-+.-.+ +...+.
T Consensus 114 dYRG~R~Kd~iieFAhR~a~-----------------aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~P----L~d~fi 172 (468)
T KOG4277|consen 114 DYRGGREKDAIIEFAHRCAA-----------------AIIEPINENQIEFEHLQARHQPFFVFFGTGEGP----LFDAFI 172 (468)
T ss_pred ecCCCccHHHHHHHHHhccc-----------------ceeeecChhHHHHHHHhhccCceEEEEeCCCCc----HHHHHH
Confidence 89999999999999999755 233344442 22233456778899988864322 222333
Q ss_pred HHHHHhcCCCcEEEEEE-eCCCccc-ccCCCCCCceEEEEeCCCcccCceeeccCcCHHHHHHHHHhc
Q 021468 201 KLAKHLRGVDSIVIAKM-DGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 266 (312)
Q Consensus 201 ~la~~~~~~~~v~~~~v-d~~~~~~-~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~ 266 (312)
+.|.. .+.+++. ..+.... ..-...-.|++.+|++...- +... .+.+.|.+||+..
T Consensus 173 dAASe-----~~~~a~FfSaseeVaPe~~~~kempaV~VFKDetf~---i~de--~dd~dLseWinRE 230 (468)
T KOG4277|consen 173 DAASE-----KFSVARFFSASEEVAPEENDAKEMPAVAVFKDETFE---IEDE--GDDEDLSEWINRE 230 (468)
T ss_pred HHhhh-----heeeeeeeccccccCCcccchhhccceEEEccceeE---EEec--CchhHHHHHHhHh
Confidence 33332 2333333 3333333 34456678999999886432 1233 3568889999865
No 46
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.63 E-value=2.1e-15 Score=113.38 Aligned_cols=100 Identities=34% Similarity=0.642 Sum_probs=81.6
Q ss_pred CeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCC-CcEEEEEEeCCCcc--c--ccCCCCCCce
Q 021468 160 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE--H--HRAKSDGFPT 234 (312)
Q Consensus 160 ~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~--~--~~~~i~~~Pt 234 (312)
++..++.++|.+.+.+.+++++|+||++||++|+.+.+.|.+++..+++. +.+.|+.+||+... . .+|++.++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 57889999999999877889999999999999999999999999998753 35899999986533 2 6899999999
Q ss_pred EEEEeCCCccc-CceeeccC-cCHHHH
Q 021468 235 ILFFPAGNKSF-DPINVDVD-RTVVAL 259 (312)
Q Consensus 235 ~~~~~~g~~~~-~~~~y~g~-~~~~~l 259 (312)
+++|++|.... ....|+|. +..+.+
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHH
Confidence 99998886531 33567774 555544
No 47
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.63 E-value=1.1e-15 Score=114.75 Aligned_cols=103 Identities=18% Similarity=0.195 Sum_probs=91.0
Q ss_pred CceEEeCCCcccccccCCCccEEEEEeeC--Cc--hh--hHHHHHHHHHHHc--CCeEEEEEEeCCCCccccchhhhhCC
Q 021468 31 PLVTIFTRENAPSVFESPIKNQLLLFAVS--ND--SE--KLLPVFEEAAKSF--KGKLIFVYVQMDNEDVGKPVSEYFGI 102 (312)
Q Consensus 31 ~~v~~lt~~~~~~~~~~~~~~~i~f~~~~--~~--c~--~~~~~~~~la~~~--~~~i~f~~vd~~~~~~~~~l~~~~~v 102 (312)
..|..+|+++|++.+..+...+|+||.+| ++ |+ .+.|.+.++|.++ .+.+.|++||++. ++.++++|||
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~---~~~La~~~~I 85 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK---DAKVAKKLGL 85 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC---CHHHHHHcCC
Confidence 46788999999999988888888877777 54 99 8899999999999 7889999999999 6799999999
Q ss_pred CCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021468 103 TGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL 140 (312)
Q Consensus 103 ~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l 140 (312)
+++ ||+++|.+|. ...|.|.++.+.|.+|+.+++
T Consensus 86 ~~i--PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 DEE--DSIYVFKDDE--VIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccc--cEEEEEECCE--EEEeeCCCCHHHHHHHHHHHh
Confidence 999 9999999886 345899999999999999864
No 48
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.63 E-value=1.6e-15 Score=138.49 Aligned_cols=106 Identities=30% Similarity=0.603 Sum_probs=92.0
Q ss_pred CCCeEEEeCccchhhhh--cCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCC
Q 021468 158 DGDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDG 231 (312)
Q Consensus 158 ~~~v~~l~~~~f~~~i~--~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----~~~~i~~ 231 (312)
+..|..|+..+|+..+. +.++++||.||++||++|+.|.|.|.+++..+++. .+.|+.+|++.+.. .+|+|.+
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~ 428 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 428 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCc
Confidence 45888999999999874 56789999999999999999999999999999763 48899999987642 4799999
Q ss_pred CceEEEEeCCCcccCceeec-cCcCHHHHHHHHHhc
Q 021468 232 FPTILFFPAGNKSFDPINVD-VDRTVVALYKFLKKN 266 (312)
Q Consensus 232 ~Pt~~~~~~g~~~~~~~~y~-g~~~~~~l~~fi~~~ 266 (312)
+||+++|++|.. .++.|. |.++.+.|..||+..
T Consensus 429 ~PTii~Fk~g~~--~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 429 FPTILFFPKHSS--RPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred cceEEEEECCCC--CceeCCCCCCCHHHHHHHHHhh
Confidence 999999999965 567898 489999999999854
No 49
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.63 E-value=1.3e-15 Score=114.46 Aligned_cols=99 Identities=23% Similarity=0.342 Sum_probs=81.3
Q ss_pred CCeEEEeCccchhhhhcC--CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCCCceE
Q 021468 159 GDVKIVVGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTI 235 (312)
Q Consensus 159 ~~v~~l~~~~f~~~i~~~--~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~i~~~Pt~ 235 (312)
+.+..++.++|.+.+.+. ++.++|+||++||++|+.+.|.|++++..+.+ +.|+++|++.+.. .+++|.++|++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~---v~f~~vd~~~~~l~~~~~i~~~Pt~ 80 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE---TKFVKINAEKAFLVNYLDIKVLPTL 80 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC---cEEEEEEchhhHHHHhcCCCcCCEE
Confidence 567889999999988665 38999999999999999999999999999864 7899999998622 78999999999
Q ss_pred EEEeCCCcccCceeecc-------CcCHHHHHHHH
Q 021468 236 LFFPAGNKSFDPINVDV-------DRTVVALYKFL 263 (312)
Q Consensus 236 ~~~~~g~~~~~~~~y~g-------~~~~~~l~~fi 263 (312)
++|++|+.+. ++.| ..+.+.|.+|+
T Consensus 81 ~~f~~G~~v~---~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 81 LVYKNGELID---NIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEECCEEEE---EEecHHHhCCCCCCHHHHHHHh
Confidence 9999998875 4444 33445555554
No 50
>PLN02309 5'-adenylylsulfate reductase
Probab=99.63 E-value=1.6e-15 Score=138.44 Aligned_cols=106 Identities=29% Similarity=0.610 Sum_probs=92.3
Q ss_pred CCCeEEEeCccchhhhh--cCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCC-Cccc---ccCCCCC
Q 021468 158 DGDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH---HRAKSDG 231 (312)
Q Consensus 158 ~~~v~~l~~~~f~~~i~--~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~---~~~~i~~ 231 (312)
+..|..++.++|++.+. +.++.++|+||++||++|+.|.|.|.+++..+.+. ++.|+.+|++ .+.. ..|+|.+
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcchHHHHhhCCCce
Confidence 45888999999999874 57899999999999999999999999999999764 6999999999 4333 3699999
Q ss_pred CceEEEEeCCCcccCceeecc-CcCHHHHHHHHHhc
Q 021468 232 FPTILFFPAGNKSFDPINVDV-DRTVVALYKFLKKN 266 (312)
Q Consensus 232 ~Pt~~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~~~ 266 (312)
+||+++|++|.. +++.|.| .++.+.|..||+..
T Consensus 423 ~PTil~f~~g~~--~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 423 FPTILLFPKNSS--RPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeEEEEEeCCCC--CeeecCCCCcCHHHHHHHHHHh
Confidence 999999999876 5788986 79999999999874
No 51
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.63 E-value=1.4e-15 Score=112.85 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=82.8
Q ss_pred eEEeCCCcccccccCCCccEEEEEeeCCchhhHHHHHHHHHHHcC---CeEEEEEEeCCCCc--cccchhhhhCCC--CC
Q 021468 33 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFK---GKLIFVYVQMDNED--VGKPVSEYFGIT--GE 105 (312)
Q Consensus 33 v~~lt~~~~~~~~~~~~~~~i~f~~~~~~c~~~~~~~~~la~~~~---~~i~f~~vd~~~~~--~~~~l~~~~~v~--~~ 105 (312)
+..|++.||++++.++...+|.||++|+.|.+ .|++.+||.+|. +.|.++.|||+++. .+..||++|||+ ++
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy 81 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY 81 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence 57899999999999999999999995544544 366666665553 24999999995411 157899999999 88
Q ss_pred CCcEEEEEcCCC-CceeccCCC-CCHHHHHHHHHHH
Q 021468 106 APKVLAYTGNDD-AKKHILDGE-LTLDKIKTFGEDF 139 (312)
Q Consensus 106 ~~P~~~~~~~~~-~~~~~~~g~-~~~~~i~~fi~~~ 139 (312)
|++.+|.+|. ..+..|.|. ++.+.|.+|+.+.
T Consensus 82 --PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 82 --PVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred --CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999999884 345789996 9999999999874
No 52
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.63 E-value=2.7e-15 Score=111.10 Aligned_cols=94 Identities=27% Similarity=0.599 Sum_probs=79.5
Q ss_pred ccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCC-CcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 021468 167 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK 243 (312)
Q Consensus 167 ~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~ 243 (312)
++|++. ..++.++|.||++||++|+.+.|.|.+++..++.. ..+.++.+|++.... .+++|.++|++++|.+|..
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~ 84 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA 84 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc
Confidence 567763 34679999999999999999999999999998653 259999999987665 7899999999999976532
Q ss_pred ccCceeeccCcCHHHHHHHHHhc
Q 021468 244 SFDPINVDVDRTVVALYKFLKKN 266 (312)
Q Consensus 244 ~~~~~~y~g~~~~~~l~~fi~~~ 266 (312)
..|.|..+.+.|.+|+++.
T Consensus 85 ----~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 ----YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ----eeecCCCCHHHHHHHHHhh
Confidence 3789999999999999874
No 53
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.63 E-value=6.7e-15 Score=114.94 Aligned_cols=98 Identities=21% Similarity=0.348 Sum_probs=80.3
Q ss_pred ccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc----cccCCCCCCceEEEEe-CC
Q 021468 167 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE----HHRAKSDGFPTILFFP-AG 241 (312)
Q Consensus 167 ~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~----~~~~~i~~~Pt~~~~~-~g 241 (312)
..|++.+ ..+++++|+||++||++|+.+.|.|.+++..+.+ .+.|+.+|++... ...|+|.++|++++|. +|
T Consensus 11 ~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 11 TPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred CCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 4566644 6789999999999999999999999999999876 4677777776543 2689999999999995 67
Q ss_pred CcccCceeeccCcCHHHHHHHHHhcCCCC
Q 021468 242 NKSFDPINVDVDRTVVALYKFLKKNASIP 270 (312)
Q Consensus 242 ~~~~~~~~y~g~~~~~~l~~fi~~~~~~~ 270 (312)
+.+. .+.|....+.|.++|.+.+...
T Consensus 88 ~~v~---~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 88 NEEG---QSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CEEE---EEeCCCCHHHHHHHHHHHHcCC
Confidence 7654 7788888899999999987533
No 54
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.62 E-value=1.8e-15 Score=118.61 Aligned_cols=87 Identities=18% Similarity=0.415 Sum_probs=76.2
Q ss_pred CCCeEEEeCccchhhhhc-CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCC---
Q 021468 158 DGDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDG--- 231 (312)
Q Consensus 158 ~~~v~~l~~~~f~~~i~~-~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~--- 231 (312)
...+..++.++|++.+.. .++.++|+||++||++|+.+.|.|.+++..+.+. ++.|+.+|++.+.. .+|+|.+
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCHHHHHHcCceecCC
Confidence 467888999999998754 3578999999999999999999999999998752 59999999998876 6788887
Q ss_pred ---CceEEEEeCCCccc
Q 021468 232 ---FPTILFFPAGNKSF 245 (312)
Q Consensus 232 ---~Pt~~~~~~g~~~~ 245 (312)
+||+++|++|+.+.
T Consensus 106 v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 106 SKQLPTIILFQGGKEVA 122 (152)
T ss_pred cCCCCEEEEEECCEEEE
Confidence 99999999998876
No 55
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.61 E-value=5e-15 Score=121.23 Aligned_cols=135 Identities=33% Similarity=0.529 Sum_probs=116.1
Q ss_pred CCcccCCccccccCC-CCHHHHHHHHHhcCCCceEEeCCCcccccccCCCccEEEEEe-eC-CchhhHHHHHHHHHHHcC
Q 021468 1 MVKKETEKISYFDGK-FDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFK 77 (312)
Q Consensus 1 ~~~~~d~~~~~y~g~-~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~~i~f~~-~~-~~c~~~~~~~~~la~~~~ 77 (312)
|||..|+.+..|+|+ ++.++|.+||..++.|.+.++|.+++..++..+.+.+++++. .. ...+.+...+.++|.+++
T Consensus 46 ~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 125 (184)
T PF13848_consen 46 VYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFK 125 (184)
T ss_dssp EEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT
T ss_pred EeccCCCCceecccccCCHHHHHHHHHHhccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcC
Confidence 478889999999999 999999999999999999999999999999998775555544 44 778999999999999999
Q ss_pred CeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCc-eeccCCCCCHHHHHHHHHH
Q 021468 78 GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK-KHILDGELTLDKIKTFGED 138 (312)
Q Consensus 78 ~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~-~~~~~g~~~~~~i~~fi~~ 138 (312)
+++.|+++|++. ++++++.+|+.....|+++++...... .+.+.+..+.++|.+|+++
T Consensus 126 ~~~~f~~~d~~~---~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 126 GKINFVYVDADD---FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTSEEEEEETTT---THHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CeEEEEEeehHH---hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 999999999996 568999999997667999999855533 3445889999999999975
No 56
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.61 E-value=3.1e-15 Score=111.81 Aligned_cols=102 Identities=22% Similarity=0.279 Sum_probs=89.7
Q ss_pred eEEeCCCcccccccC-CCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEE
Q 021468 33 VTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL 110 (312)
Q Consensus 33 v~~lt~~~~~~~~~~-~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~ 110 (312)
|.+++.++|+..+.. +.+++|.||++| ++|+.+.|.|.++++.+.+.+.|+.+||+.+. ++.+|+.|+|.++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~i~~~--Pt~ 78 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYGVQGF--PTL 78 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcCCCcC--CEE
Confidence 678999999987654 445888899999 99999999999999999998999999999855 6799999999999 999
Q ss_pred EEEcCCC----CceeccCCCCCHHHHHHHHH
Q 021468 111 AYTGNDD----AKKHILDGELTLDKIKTFGE 137 (312)
Q Consensus 111 ~~~~~~~----~~~~~~~g~~~~~~i~~fi~ 137 (312)
++|..++ .....|.|.++.++|.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 9998885 34677899999999999973
No 57
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.61 E-value=3.3e-15 Score=112.02 Aligned_cols=101 Identities=23% Similarity=0.308 Sum_probs=82.2
Q ss_pred CCeEEEeC-ccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceE
Q 021468 159 GDVKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI 235 (312)
Q Consensus 159 ~~v~~l~~-~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~ 235 (312)
+.+..++. +.|.+.+. +++.++|+||++||++|+.+.|.+.++++.+.+ +.|+++|++.+.. .+|+|.++||+
T Consensus 4 g~v~~i~~~~~~~~~i~-~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~---i~f~~Vd~~~~~~l~~~~~v~~vPt~ 79 (113)
T cd02989 4 GKYREVSDEKEFFEIVK-SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE---TKFIKVNAEKAPFLVEKLNIKVLPTV 79 (113)
T ss_pred CCeEEeCCHHHHHHHHh-CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC---CEEEEEEcccCHHHHHHCCCccCCEE
Confidence 45777887 88888774 568999999999999999999999999998754 8999999999875 78999999999
Q ss_pred EEEeCCCcccCceeec-----cCcCHHHHHHHH
Q 021468 236 LFFPAGNKSFDPINVD-----VDRTVVALYKFL 263 (312)
Q Consensus 236 ~~~~~g~~~~~~~~y~-----g~~~~~~l~~fi 263 (312)
++|++|+.+++...+. +..+..++.+||
T Consensus 80 l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 80 ILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9999998775222222 245567777765
No 58
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.2e-15 Score=109.79 Aligned_cols=85 Identities=29% Similarity=0.545 Sum_probs=72.2
Q ss_pred cCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeecc
Q 021468 175 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV 252 (312)
Q Consensus 175 ~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g 252 (312)
..++.++|+||++||++|+.+.|.+.++|.++.+ +.|+++|++++.. ..+++...||+.||++|+.+. .+.|
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~---~~vG 92 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVD---EVVG 92 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEE---EEec
Confidence 3468999999999999999999999999999986 8999999997333 789999999999999999876 7777
Q ss_pred CcCHHHHHHHHHhc
Q 021468 253 DRTVVALYKFLKKN 266 (312)
Q Consensus 253 ~~~~~~l~~fi~~~ 266 (312)
. +...+.+.+..+
T Consensus 93 a-~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 93 A-NKAELEKKIAKH 105 (106)
T ss_pred C-CHHHHHHHHHhc
Confidence 4 345777776654
No 59
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.60 E-value=4.5e-15 Score=109.65 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=88.3
Q ss_pred eEEeCCCcccccccCCCc-cEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEE
Q 021468 33 VTIFTRENAPSVFESPIK-NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL 110 (312)
Q Consensus 33 v~~lt~~~~~~~~~~~~~-~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~ 110 (312)
|.+++++++.+.+..+.. ++++||++| ++|+.+.|.|.+++.++.+.+.|+.+||+. +..++++|||.++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~---~~~~~~~~~i~~~--P~~ 76 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV---HQSLAQQYGVRGF--PTI 76 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc---hHHHHHHCCCCcc--CEE
Confidence 568899999887755444 788899999 999999999999999999999999999998 6699999999998 999
Q ss_pred EEEcCCCCceeccCCCCCHHHHHHHH
Q 021468 111 AYTGNDDAKKHILDGELTLDKIKTFG 136 (312)
Q Consensus 111 ~~~~~~~~~~~~~~g~~~~~~i~~fi 136 (312)
+++..+....+.|.|.++.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 77 KVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEECCCCcceeecCCCCCHHHHHHHh
Confidence 99988866678899999999999997
No 60
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.60 E-value=5e-15 Score=119.50 Aligned_cols=106 Identities=21% Similarity=0.303 Sum_probs=89.2
Q ss_pred CCCeEEEeC-ccchhhhhcCC--CcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCCCc
Q 021468 158 DGDVKIVVG-NNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFP 233 (312)
Q Consensus 158 ~~~v~~l~~-~~f~~~i~~~~--k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~i~~~P 233 (312)
.+.+..++. ++|.+.+...+ ..++|+||++||++|+.+.|.|..+|..+.. +.|++||++.... ..|+|.++|
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~---vkF~kVd~d~~~l~~~f~v~~vP 137 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA---VKFCKIRASATGASDEFDTDALP 137 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC---eEEEEEeccchhhHHhCCCCCCC
Confidence 477889999 99999886544 4899999999999999999999999999854 9999999997633 789999999
Q ss_pred eEEEEeCCCcccCceeec---c-CcCHHHHHHHHHhc
Q 021468 234 TILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKN 266 (312)
Q Consensus 234 t~~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~ 266 (312)
|+++|++|+.+.+.+.+. | .++...|..||.++
T Consensus 138 Tlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 138 ALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 999999998875444443 2 67788999888765
No 61
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.60 E-value=4e-15 Score=109.07 Aligned_cols=98 Identities=48% Similarity=0.927 Sum_probs=82.7
Q ss_pred EEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeC
Q 021468 163 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPA 240 (312)
Q Consensus 163 ~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~ 240 (312)
.++.++|.+.+. +++.++|+||++||++|+.+.+.|.+++..++....+.++.+|++.+.. .+++|.++|++++|++
T Consensus 2 ~l~~~~~~~~i~-~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVK-DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHh-CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 366778888774 4459999999999999999999999999999533479999999998655 7899999999999987
Q ss_pred CCcccCceeeccCcCHHHHHHHH
Q 021468 241 GNKSFDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 241 g~~~~~~~~y~g~~~~~~l~~fi 263 (312)
+.. ...+|.|..+.+.|.+|+
T Consensus 81 ~~~--~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSK--EPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCc--ccccCCCCcCHHHHHhhC
Confidence 742 345899988999998875
No 62
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.58 E-value=3.2e-14 Score=119.14 Aligned_cols=202 Identities=20% Similarity=0.227 Sum_probs=142.4
Q ss_pred eCCCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcC-----CeEEEEEEeCCCCccccchhhhhCCCCCCCcE
Q 021468 36 FTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-----GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 109 (312)
Q Consensus 36 lt~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~-----~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~ 109 (312)
++.+|++.+......++|-||++| ...+.++|+|+++|..++ +++.++.|||+.++ .|+++|-|..| ||
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~---~ia~ky~I~Ky--PT 75 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKED---DIADKYHINKY--PT 75 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhh---HHhhhhccccC--ce
Confidence 467788888888878888899999 999999999999998876 68999999999965 99999999999 99
Q ss_pred EEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeC-ccchhhhhcCCCcEEEEEEcCC
Q 021468 110 LAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVG-NNFDEIVLDESKDVLLEIYAPW 188 (312)
Q Consensus 110 ~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~~~~~~~~~s~~~~~~~~~~v~~l~~-~~f~~~i~~~~k~~lV~f~~~~ 188 (312)
+.+|++|......|.|.++.+.|.+||++.++..+ .+..+ +.+......+.+.++.+|-...
T Consensus 76 lKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~~i-----------------~Ef~sl~~l~n~~~p~K~~vIgyF~~kd 138 (375)
T KOG0912|consen 76 LKVFRNGEMMKREYRGQRSVEALIEFIEKQLSDPI-----------------NEFESLDQLQNLDIPSKRTVIGYFPSKD 138 (375)
T ss_pred eeeeeccchhhhhhccchhHHHHHHHHHHHhccHH-----------------HHHHhHHHHHhhhccccceEEEEeccCC
Confidence 99999998777789999999999999999987432 22211 2333322224455666666555
Q ss_pred ChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeecc-CcCHHHHHHHHHhcC
Q 021468 189 CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALYKFLKKNA 267 (312)
Q Consensus 189 C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~~~~ 267 (312)
.+.. ..+.++|..+++.-.+.++.-|.... ..-.+.+ +++|+.+... .--.|.| ..+.+.+..||.+.+
T Consensus 139 spey----~~~~kva~~lr~dc~f~V~~gD~~~~----~~~~~~~-~~~f~pd~~~-~~~~f~G~~~nf~el~~Wi~dKc 208 (375)
T KOG0912|consen 139 SPEY----DNLRKVASLLRDDCVFLVGFGDLLKP----HEPPGKN-ILVFDPDHSE-PNHEFLGSMTNFDELKQWIQDKC 208 (375)
T ss_pred CchH----HHHHHHHHHHhhccEEEeeccccccC----CCCCCCc-eEEeCCCcCC-cCcccccccccHHHHHHHHHhcc
Confidence 5443 46778888888732222222222211 1112233 4455444433 1126899 456899999999886
Q ss_pred CC
Q 021468 268 SI 269 (312)
Q Consensus 268 ~~ 269 (312)
-+
T Consensus 209 vp 210 (375)
T KOG0912|consen 209 VP 210 (375)
T ss_pred hh
Confidence 53
No 63
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.57 E-value=1.8e-14 Score=106.05 Aligned_cols=98 Identities=18% Similarity=0.146 Sum_probs=86.2
Q ss_pred ceEEeCCCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCccccchhhhhCCCCCCCcE
Q 021468 32 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 109 (312)
Q Consensus 32 ~v~~lt~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~ 109 (312)
.|.+++.++|+.++.. .++|.||++| ++|+.+.|.|.+++..+++ .+.|+.+||++ ++.++++|+|.++ |+
T Consensus 2 ~v~~l~~~~f~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~---~~~~~~~~~i~~~--Pt 74 (101)
T cd02994 2 NVVELTDSNWTLVLEG--EWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ---EPGLSGRFFVTAL--PT 74 (101)
T ss_pred ceEEcChhhHHHHhCC--CEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC---CHhHHHHcCCccc--CE
Confidence 4778999999988754 4789999999 9999999999999998875 59999999998 5699999999999 99
Q ss_pred EEEEcCCCCceeccCCCCCHHHHHHHHHH
Q 021468 110 LAYTGNDDAKKHILDGELTLDKIKTFGED 138 (312)
Q Consensus 110 ~~~~~~~~~~~~~~~g~~~~~~i~~fi~~ 138 (312)
++++.+|. ...|.|.++.++|..|+++
T Consensus 75 ~~~~~~g~--~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 75 IYHAKDGV--FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEEeCCCC--EEEecCCCCHHHHHHHHhC
Confidence 99987775 4678999999999999863
No 64
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.56 E-value=1.6e-14 Score=110.98 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=79.6
Q ss_pred Cccchhhhh-cCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEE-EEeCC
Q 021468 166 GNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL-FFPAG 241 (312)
Q Consensus 166 ~~~f~~~i~-~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~-~~~~g 241 (312)
..+|++.+. ..++.++|.||++||++|+.+.|.|.++|.++.+ .+.|+.+|++++.. ..|+|.+.|+++ ||++|
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g 88 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRNK 88 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEECC
Confidence 477888776 3478899999999999999999999999999977 58889999999887 789999776666 88999
Q ss_pred C-cccCceeecc--------CcCHHHHHHHHHhcC
Q 021468 242 N-KSFDPINVDV--------DRTVVALYKFLKKNA 267 (312)
Q Consensus 242 ~-~~~~~~~y~g--------~~~~~~l~~fi~~~~ 267 (312)
. .++ +..| ..+.++|++-+....
T Consensus 89 ~~~vd---~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 89 HIMID---LGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred eEEEE---EecccccccccccCCHHHHHHHHHHHH
Confidence 7 554 5555 466778887777663
No 65
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.8e-14 Score=117.47 Aligned_cols=106 Identities=25% Similarity=0.421 Sum_probs=88.8
Q ss_pred eEEEeC-ccchhhhhc-CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEE
Q 021468 161 VKIVVG-NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL 236 (312)
Q Consensus 161 v~~l~~-~~f~~~i~~-~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~ 236 (312)
|..+++ .+|...+.. ..+.++|.|+++||++|+.+.|+|..++.+|.+ .+|.+||++.... ..++|...||++
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~~taa~~gV~amPTFi 79 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECRGTAATNGVNAMPTFI 79 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhhchhhhcCcccCceEE
Confidence 444444 667776643 347899999999999999999999999999976 8999999998877 689999999999
Q ss_pred EEeCCCcccCceeeccCcCHHHHHHHHHhcCCCCccc
Q 021468 237 FFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI 273 (312)
Q Consensus 237 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~~ 273 (312)
+|++|.+++ .+.| .+...|.+-+.+++.....-
T Consensus 80 ff~ng~kid---~~qG-Ad~~gLe~kv~~~~stsaa~ 112 (288)
T KOG0908|consen 80 FFRNGVKID---QIQG-ADASGLEEKVAKYASTSAAS 112 (288)
T ss_pred EEecCeEee---eecC-CCHHHHHHHHHHHhccCccc
Confidence 999999886 8888 57899999999997755443
No 66
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.55 E-value=2.5e-14 Score=104.55 Aligned_cols=91 Identities=19% Similarity=0.403 Sum_probs=79.2
Q ss_pred chhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccC
Q 021468 169 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFD 246 (312)
Q Consensus 169 f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~ 246 (312)
.+..+...+++++|+||++||+.|+.+.+.+.++++.+.+ .+.++.+|++.... .++++.++|++++|++|+.+.
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~- 81 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK- 81 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE-
Confidence 3455667889999999999999999999999999999876 69999999988765 789999999999999887664
Q ss_pred ceeeccCcCHHHHHHHHH
Q 021468 247 PINVDVDRTVVALYKFLK 264 (312)
Q Consensus 247 ~~~y~g~~~~~~l~~fi~ 264 (312)
.+.|..+.+.|.+||+
T Consensus 82 --~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 --EISGVKMKSEYREFIE 97 (97)
T ss_pred --EEeCCccHHHHHHhhC
Confidence 7888888899988874
No 67
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.1e-14 Score=109.42 Aligned_cols=105 Identities=18% Similarity=0.280 Sum_probs=91.5
Q ss_pred CceEEeCCCcccc-cccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCc
Q 021468 31 PLVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK 108 (312)
Q Consensus 31 ~~v~~lt~~~~~~-~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P 108 (312)
..+..++...|++ ++++..+++|.|+++| ++|+.+.|.+++++.+|.|++.|+++|.++ +.+++.+|+|... |
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~---~~ela~~Y~I~av--P 117 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE---HPELAEDYEISAV--P 117 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc---ccchHhhcceeee--e
Confidence 4566777777766 4566777778899999 999999999999999999999999999999 6799999999988 9
Q ss_pred EEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021468 109 VLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 141 (312)
Q Consensus 109 ~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~ 141 (312)
++++|.+|. ..-.+.|..+.+.|.++|++++.
T Consensus 118 tvlvfknGe-~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 118 TVLVFKNGE-KVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEEECCE-EeeeecccCCHHHHHHHHHHHhc
Confidence 999999886 33467899999999999999865
No 68
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.54 E-value=1.9e-14 Score=106.10 Aligned_cols=97 Identities=22% Similarity=0.311 Sum_probs=86.1
Q ss_pred eEEeCCCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC---eEEEEEEeCCCCccccchhhhhCCCCCCCc
Q 021468 33 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPK 108 (312)
Q Consensus 33 v~~lt~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P 108 (312)
+.++++++|+..+..+ .++|.||++| ++|+.+.|.|.+++.++.+ .+.|+.+||+. +..+|+.|+|.++ |
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--P 75 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ---HRELCSEFQVRGY--P 75 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC---ChhhHhhcCCCcC--C
Confidence 5788999999988766 5888999999 9999999999999999987 79999999998 5699999999998 9
Q ss_pred EEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021468 109 VLAYTGNDDAKKHILDGELTLDKIKTFG 136 (312)
Q Consensus 109 ~~~~~~~~~~~~~~~~g~~~~~~i~~fi 136 (312)
+++++.+|. ....+.|.++.++|.+||
T Consensus 76 t~~~~~~g~-~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 76 TLLLFKDGE-KVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEEeCCC-eeeEeeCCCCHHHHHhhC
Confidence 999998775 456789999999998885
No 69
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.54 E-value=2.4e-14 Score=105.44 Aligned_cols=98 Identities=20% Similarity=0.317 Sum_probs=88.5
Q ss_pred eCCCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC--eEEEEEEeCCCCccccchhhhhCCCCCCCcEEEE
Q 021468 36 FTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY 112 (312)
Q Consensus 36 lt~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~--~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~ 112 (312)
|++++|+..+..+..++|+||++| +.|+.+.+.|.+++..+++ .+.|+.+||+. ++.++++|+|.++ |++++
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~i~~~--P~~~~ 75 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA---EKDLASRFGVSGF--PTIKF 75 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc---hHHHHHhCCCCcC--CEEEE
Confidence 467788888888888899999999 9999999999999999997 69999999998 6799999999988 99999
Q ss_pred EcCCCCceeccCCCCCHHHHHHHHHHH
Q 021468 113 TGNDDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 113 ~~~~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
+..++. .+.|.|..+.+.|..||+++
T Consensus 76 ~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 76 FPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred ecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 988865 77899999999999999875
No 70
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.54 E-value=2.5e-14 Score=106.82 Aligned_cols=101 Identities=13% Similarity=0.189 Sum_probs=87.0
Q ss_pred ceEEeCCCccccccc---CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCe-EEEEEEeCCCCccccchhh-hhCCCCC
Q 021468 32 LVTIFTRENAPSVFE---SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSE-YFGITGE 105 (312)
Q Consensus 32 ~v~~lt~~~~~~~~~---~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~~-~~~v~~~ 105 (312)
.|.+++.++|+.++. ++++++|.||++| ++|+++.|.|.+++..+.+. +.|+.|||+.. ...+|. .++|.++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~~v~~~ 79 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEELQLKSF 79 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhcCCCcC
Confidence 477899999998873 5678899999999 99999999999999999974 99999999873 247786 5999999
Q ss_pred CCcEEEEEcCCCCceeccCCC-CCHHHHHHHH
Q 021468 106 APKVLAYTGNDDAKKHILDGE-LTLDKIKTFG 136 (312)
Q Consensus 106 ~~P~~~~~~~~~~~~~~~~g~-~~~~~i~~fi 136 (312)
|++++|..+....+.|.|. ++.++|..|+
T Consensus 80 --Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 --PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred --CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999998876667889985 8999999885
No 71
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.54 E-value=2.3e-14 Score=104.70 Aligned_cols=92 Identities=23% Similarity=0.433 Sum_probs=75.2
Q ss_pred CccchhhhhcC-CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCC
Q 021468 166 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGN 242 (312)
Q Consensus 166 ~~~f~~~i~~~-~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~ 242 (312)
.++|++.+... ++.++|+||++||++|+.+.+.|.+++..+.. .+.++.+|++.... .+|++.++|++++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 35677766544 58999999999999999999999999999733 69999999987765 789999999999999887
Q ss_pred cccCceeeccCcCHHHHHHHH
Q 021468 243 KSFDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 243 ~~~~~~~y~g~~~~~~l~~fi 263 (312)
.+. .+.| ...+.|.+.|
T Consensus 80 ~~~---~~~g-~~~~~l~~~~ 96 (97)
T cd02984 80 IVD---RVSG-ADPKELAKKV 96 (97)
T ss_pred EEE---EEeC-CCHHHHHHhh
Confidence 654 5556 4567777655
No 72
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.54 E-value=2.5e-14 Score=116.89 Aligned_cols=105 Identities=19% Similarity=0.218 Sum_probs=87.7
Q ss_pred CCCeEEEeCccchhhhhcCC--CcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCCCceE
Q 021468 158 DGDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTI 235 (312)
Q Consensus 158 ~~~v~~l~~~~f~~~i~~~~--k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~i~~~Pt~ 235 (312)
.+.|..++..+|...+.... ..++|+||++||++|+.|.+.|..+|.++.. ++|+++|++.. ...|++.++||+
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~---vkFvkI~ad~~-~~~~~i~~lPTl 156 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD---TKFVKIISTQC-IPNYPDKNLPTI 156 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC---CEEEEEEhHHh-HhhCCCCCCCEE
Confidence 47899999999998876554 4799999999999999999999999999864 89999998754 478999999999
Q ss_pred EEEeCCCcccCceeec---c-CcCHHHHHHHHHhc
Q 021468 236 LFFPAGNKSFDPINVD---V-DRTVVALYKFLKKN 266 (312)
Q Consensus 236 ~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~ 266 (312)
++|++|+.+.+.+.+. | .++...|..+|.+.
T Consensus 157 liyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 157 LVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 9999998876444333 2 66788888888754
No 73
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.52 E-value=4.1e-14 Score=104.77 Aligned_cols=91 Identities=23% Similarity=0.396 Sum_probs=74.7
Q ss_pred ccchhhhhcCCCcEEEEEEcCCChhhhcchHHH---HHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCCCceEEE
Q 021468 167 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILF 237 (312)
Q Consensus 167 ~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~------~~~~i~~~Pt~~~ 237 (312)
+.|.+.+ ..+++++|+||++||++|+.+.+.+ .+++..+.+ ++.++.+|++.+.. .++++.++|++++
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 3456655 5679999999999999999999988 678888875 69999999887432 5899999999999
Q ss_pred EeC--CCcccCceeeccCcCHHHHHHHH
Q 021468 238 FPA--GNKSFDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 238 ~~~--g~~~~~~~~y~g~~~~~~l~~fi 263 (312)
|+. |+. +.++.|..+.+.|.++|
T Consensus 79 ~~~~~g~~---~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 79 YGPGGEPE---PLRLPGFLTADEFLEAL 103 (104)
T ss_pred ECCCCCCC---CcccccccCHHHHHHHh
Confidence 984 554 34888999999999887
No 74
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.51 E-value=4.5e-14 Score=103.61 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=67.1
Q ss_pred ccchhhhhcC-CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 021468 167 NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK 243 (312)
Q Consensus 167 ~~f~~~i~~~-~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~ 243 (312)
+.|++.+.+. ++.++|.|+++||++|+.|.|.+.++|.++++ .+.|+.+|+++... +.|+|...|+++||++|+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 4566666544 79999999999999999999999999999975 49999999999887 7899999999999999876
Q ss_pred c
Q 021468 244 S 244 (312)
Q Consensus 244 ~ 244 (312)
.
T Consensus 81 ~ 81 (114)
T cd02986 81 M 81 (114)
T ss_pred E
Confidence 4
No 75
>PRK09381 trxA thioredoxin; Provisional
Probab=99.50 E-value=1.8e-13 Score=102.16 Aligned_cols=105 Identities=19% Similarity=0.279 Sum_probs=91.0
Q ss_pred CCceEEeCCCcccc-cccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCC
Q 021468 30 LPLVTIFTRENAPS-VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP 107 (312)
Q Consensus 30 ~~~v~~lt~~~~~~-~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~ 107 (312)
.+.+.++++++|.+ +...+.+++|.||++| ++|+.+.|.|++++.++.+.+.|+.+|++. ++.++++|+|..+
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~-- 76 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYGIRGI-- 76 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC---ChhHHHhCCCCcC--
Confidence 35678889999986 4555778888999999 999999999999999999989999999998 5689999999998
Q ss_pred cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHh
Q 021468 108 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFL 140 (312)
Q Consensus 108 P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l 140 (312)
|+++++.+|. ....+.|..+.+.|..|+...+
T Consensus 77 Pt~~~~~~G~-~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 77 PTLLLFKNGE-VAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CEEEEEeCCe-EEEEecCCCCHHHHHHHHHHhc
Confidence 9999998765 4556788899999999998865
No 76
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.50 E-value=2.7e-14 Score=119.38 Aligned_cols=95 Identities=25% Similarity=0.557 Sum_probs=84.2
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCC-cEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeecc
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV 252 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~-~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g 252 (312)
++..|+|.||+|||.+|+++.|+|.+++..++..+ -++++++||+..+. .+|+|+++||+.+|+++--+ .|.|
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~----dYRG 117 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI----DYRG 117 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeee----ecCC
Confidence 45779999999999999999999999999998753 69999999999987 79999999999999988655 8999
Q ss_pred CcCHHHHHHHHHhcCCCCcccc
Q 021468 253 DRTVVALYKFLKKNASIPFKIQ 274 (312)
Q Consensus 253 ~~~~~~l~~fi~~~~~~~~~~~ 274 (312)
++..+.|++|....+..-++..
T Consensus 118 ~R~Kd~iieFAhR~a~aiI~pi 139 (468)
T KOG4277|consen 118 GREKDAIIEFAHRCAAAIIEPI 139 (468)
T ss_pred CccHHHHHHHHHhcccceeeec
Confidence 9999999999998876555543
No 77
>PTZ00051 thioredoxin; Provisional
Probab=99.50 E-value=9.4e-14 Score=101.64 Aligned_cols=91 Identities=26% Similarity=0.500 Sum_probs=73.4
Q ss_pred eEEEeC-ccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEE
Q 021468 161 VKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 237 (312)
Q Consensus 161 v~~l~~-~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~ 237 (312)
+..++. ++|.+. .+.++.++|+||++||++|+.+.+.|..++..+.+ +.++.+|++.+.. .+|++.++|++++
T Consensus 2 v~~i~~~~~~~~~-~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 77 (98)
T PTZ00051 2 VHIVTSQAEFEST-LSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK---MVFVKVDVDELSEVAEKENITSMPTFKV 77 (98)
T ss_pred eEEecCHHHHHHH-HhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC---cEEEEEECcchHHHHHHCCCceeeEEEE
Confidence 344554 556664 46788999999999999999999999999997654 8999999987765 7899999999999
Q ss_pred EeCCCcccCceeeccCcCHHHH
Q 021468 238 FPAGNKSFDPINVDVDRTVVAL 259 (312)
Q Consensus 238 ~~~g~~~~~~~~y~g~~~~~~l 259 (312)
|++|+.+. .+.|. ..+.|
T Consensus 78 ~~~g~~~~---~~~G~-~~~~~ 95 (98)
T PTZ00051 78 FKNGSVVD---TLLGA-NDEAL 95 (98)
T ss_pred EeCCeEEE---EEeCC-CHHHh
Confidence 99998765 67773 44444
No 78
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.49 E-value=1.5e-13 Score=101.72 Aligned_cols=100 Identities=19% Similarity=0.311 Sum_probs=87.0
Q ss_pred eEEeCCCcccccccCCC-ccEEEEEeeC-CchhhHHHHHHHHHHHcC--CeEEEEEEeCCCCccccchhhhhCCCCCCCc
Q 021468 33 VTIFTRENAPSVFESPI-KNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPK 108 (312)
Q Consensus 33 v~~lt~~~~~~~~~~~~-~~~i~f~~~~-~~c~~~~~~~~~la~~~~--~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P 108 (312)
+.++++.+++..+.... ..++.||++| .+|+++.|.|.+++..+. +.+.|+.+||+.+ ++.+|++|+|.++ |
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~i~~~--P 77 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYGVSGF--P 77 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCCCCCc--C
Confidence 56889999988876555 6778899999 999999999999999997 4699999999883 3499999999998 9
Q ss_pred EEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021468 109 VLAYTGNDDAKKHILDGELTLDKIKTFG 136 (312)
Q Consensus 109 ~~~~~~~~~~~~~~~~g~~~~~~i~~fi 136 (312)
+++++..++...+.|.|.++.++|.+|+
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 9999988865677889999999999985
No 79
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.49 E-value=9.6e-14 Score=115.71 Aligned_cols=106 Identities=15% Similarity=0.228 Sum_probs=92.1
Q ss_pred CCceEEeCCCcccccccC-----CCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCC
Q 021468 30 LPLVTIFTRENAPSVFES-----PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT 103 (312)
Q Consensus 30 ~~~v~~lt~~~~~~~~~~-----~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~ 103 (312)
.+.+.++|+++|++.+.. ..+++|.||++| ++|+.+.|.|+++++++++.+.|+.+||+. ++.++++|+|.
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~---~~~l~~~~~I~ 105 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR---ALNLAKRFAIK 105 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc---cHHHHHHcCCC
Confidence 356889999999987643 468899999999 999999999999999999999999999998 66999999999
Q ss_pred CCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021468 104 GEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 141 (312)
Q Consensus 104 ~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~ 141 (312)
++ |++.+|.+|... ..+.|.++.++|.+|+.+.+.
T Consensus 106 ~~--PTl~~f~~G~~v-~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 106 GY--PTLLLFDKGKMY-QYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred cC--CEEEEEECCEEE-EeeCCCCCHHHHHHHHHHHHH
Confidence 99 999999977532 223677999999999999875
No 80
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.49 E-value=1.5e-13 Score=103.03 Aligned_cols=89 Identities=12% Similarity=0.185 Sum_probs=76.2
Q ss_pred cCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeecc
Q 021468 175 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV 252 (312)
Q Consensus 175 ~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g 252 (312)
..+..++|+||++||++|+.+.+.+++++..+ . .+.+..+|.+.+.. .+|++.++|++++|++|... ..+.+.|
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~-~~~~~~G 95 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKD-GGIRYYG 95 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeec-ceEEEEe
Confidence 34667899999999999999999999999886 3 58999999998766 78999999999999988665 4557889
Q ss_pred CcCHHHHHHHHHhcC
Q 021468 253 DRTVVALYKFLKKNA 267 (312)
Q Consensus 253 ~~~~~~l~~fi~~~~ 267 (312)
..+..+|.+||...+
T Consensus 96 ~~~~~el~~~i~~i~ 110 (113)
T cd02975 96 LPAGYEFASLIEDIV 110 (113)
T ss_pred cCchHHHHHHHHHHH
Confidence 888899999998764
No 81
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.48 E-value=2.1e-13 Score=100.76 Aligned_cols=98 Identities=19% Similarity=0.313 Sum_probs=85.1
Q ss_pred eEEeCCCcccccccC-CCccEEEEEeeC-CchhhHHHHHHHHHHHcCC--eEEEEEEeCCCCccccchhhhhCCCCCCCc
Q 021468 33 VTIFTRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVSEYFGITGEAPK 108 (312)
Q Consensus 33 v~~lt~~~~~~~~~~-~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~--~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P 108 (312)
|.+|+..+|++.+.. +..++|.||++| ++|+.+.|.|.++++.+.+ .+.|+.+||+. + .++..+++.++ |
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~---~-~~~~~~~~~~~--P 75 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA---N-DVPSEFVVDGF--P 75 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc---h-hhhhhccCCCC--C
Confidence 678999999887654 467788899999 9999999999999999987 59999999987 3 68889999888 9
Q ss_pred EEEEEcCCC-CceeccCCCCCHHHHHHHH
Q 021468 109 VLAYTGNDD-AKKHILDGELTLDKIKTFG 136 (312)
Q Consensus 109 ~~~~~~~~~-~~~~~~~g~~~~~~i~~fi 136 (312)
++.++.+|. .....|.|..+.+.|.+||
T Consensus 76 t~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 76 TILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 999998876 4567789999999999986
No 82
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.48 E-value=2.3e-12 Score=105.40 Aligned_cols=173 Identities=22% Similarity=0.304 Sum_probs=138.8
Q ss_pred hhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC-CCHHHHHHHHHHHhc
Q 021468 63 EKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLE 141 (312)
Q Consensus 63 ~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~l~ 141 (312)
......|.++|+.+.+.+.|+.+.- ..+++.+|+.. |++++++.+......|.|. .+.+.|.+||....-
T Consensus 6 ~~~~~~f~~~A~~~~~~~~F~~~~~------~~~~~~~~~~~---p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 6 SELFEIFEEAAEKLKGDYQFGVTFN------EELAKKYGIKE---PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp SHHHHHHHHHHHHHTTTSEEEEEE-------HHHHHHCTCSS---SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHHhCcCCcEEEEEcH------HHHHHHhCCCC---CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence 3567889999999998899999872 37899999953 8888888866667889998 899999999999744
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEeCccchhhhhcCCCc-EEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCC
Q 021468 142 GKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 220 (312)
Q Consensus 142 ~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~i~~~~k~-~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~ 220 (312)
+.+..++..++.... ..+.+ ++++|..........+...+..+|..+++ .+.|+.+|++
T Consensus 77 -----------------P~v~~~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~ 136 (184)
T PF13848_consen 77 -----------------PLVPELTPENFEKLF-SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDAD 136 (184)
T ss_dssp -----------------TSCEEESTTHHHHHH-STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETT
T ss_pred -----------------ccccccchhhHHHHh-cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehH
Confidence 468889999999966 44544 78888877788889999999999999987 6999999999
Q ss_pred Cccc--ccCCCC--CCceEEEEeCCCcccCceeeccCcCHHHHHHHHHh
Q 021468 221 TNEH--HRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 265 (312)
Q Consensus 221 ~~~~--~~~~i~--~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~ 265 (312)
.... ..+++. .+|+++++...... ....+.|..+.+.|.+|+++
T Consensus 137 ~~~~~~~~~~i~~~~~P~~vi~~~~~~~-~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 137 DFPRLLKYFGIDEDDLPALVIFDSNKGK-YYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTHHHHHHTTTTTSSSSEEEEEETTTSE-EEE--SSCGCHHHHHHHHHH
T ss_pred HhHHHHHHcCCCCccCCEEEEEECCCCc-EEcCCCCCCCHHHHHHHhcC
Confidence 6554 677877 89999999743332 12234789999999999974
No 83
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.48 E-value=1.7e-13 Score=101.28 Aligned_cols=100 Identities=22% Similarity=0.325 Sum_probs=88.7
Q ss_pred eEEeCCCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcC--CeEEEEEEeCCCCccccchhhhhCCCCCCCcE
Q 021468 33 VTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 109 (312)
Q Consensus 33 v~~lt~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~--~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~ 109 (312)
+.++++.+|+..+..+..++|.||++| ++|+++.|.+.+++..+. +.+.|+.+||+... ++.+++++||+++ |+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~i~~~--Pt 78 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE-HDALKEEYNVKGF--PT 78 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc-cHHHHHhCCCccc--cE
Confidence 567888999999988888899999999 999999999999999997 67999999998854 6799999999999 99
Q ss_pred EEEEcCCCCceeccCCCCCHHHHHHHH
Q 021468 110 LAYTGNDDAKKHILDGELTLDKIKTFG 136 (312)
Q Consensus 110 ~~~~~~~~~~~~~~~g~~~~~~i~~fi 136 (312)
++++.+|. ....+.|..+.+.+.+|+
T Consensus 79 ~~~~~~g~-~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 79 FKYFENGK-FVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEEeCCC-eeEEeCCCCCHHHHHhhC
Confidence 99998775 456789999999998885
No 84
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=2.8e-13 Score=122.86 Aligned_cols=235 Identities=16% Similarity=0.164 Sum_probs=151.9
Q ss_pred CCceEEeCCCcccccccCCC-ccEEEEEeeC-CchhhHHHHHHHHHHHcCC---eEEEEEEeCCCCccccchhhhhCCCC
Q 021468 30 LPLVTIFTRENAPSVFESPI-KNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITG 104 (312)
Q Consensus 30 ~~~v~~lt~~~~~~~~~~~~-~~~i~f~~~~-~~c~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~~v~~ 104 (312)
.+.|.+|+.++|+..+.... .++|.||++| ++|+.++|.|+++|+.+.. -+.++.|||..+. |..+|+.|+|++
T Consensus 38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N~~lCRef~V~~ 116 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-NVKLCREFSVSG 116 (606)
T ss_pred CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-hhhhHhhcCCCC
Confidence 36889999999998765544 7888899999 9999999999999998874 6999999999988 999999999999
Q ss_pred CCCcEEEEEcCCCCc---eeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCC-CCCeEEEeC-ccchhhhhcCCCc
Q 021468 105 EAPKVLAYTGNDDAK---KHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETN-DGDVKIVVG-NNFDEIVLDESKD 179 (312)
Q Consensus 105 ~~~P~~~~~~~~~~~---~~~~~g~~~~~~i~~fi~~~l~~~~~~~~~s~~~~~~~-~~~v~~l~~-~~f~~~i~~~~k~ 179 (312)
+ |++.||..+..+ .-.+.|.....++..++.+.+.... .++.-|.++ -.++..-+. ....+.+.+....
T Consensus 117 ~--Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~----~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~y 190 (606)
T KOG1731|consen 117 Y--PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEED----AQNRYPSWPNFDPLKDTTTLEELDEGISTTANY 190 (606)
T ss_pred C--ceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHH----hhhcCCCCCCCCCCCCcchHHHHhcccccccce
Confidence 9 999999877432 2234566778888888888766322 111122221 111111111 2222223223334
Q ss_pred EEEEE-EcCCChhhhcchHHHHHHHHHhcCCCcEEEEEE-eCCCcccccCCCCCCceEEEEeCCCcccCceeeccCcCHH
Q 021468 180 VLLEI-YAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM-DGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV 257 (312)
Q Consensus 180 ~lV~f-~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~v-d~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~ 257 (312)
+.|.| ..+. .-.+..+-..+..+ .+.+..+ |.......++++..+|..++|++|... + .+....+.+
T Consensus 191 vAiv~e~~~s-------~lg~~~~l~~l~~~-~v~vr~~~d~q~~~~~~l~~~~~~~~llfrnG~~q--~-l~~~~~s~~ 259 (606)
T KOG1731|consen 191 VAIVFETEPS-------DLGWANLLNDLPSK-QVGVRARLDTQNFPLFGLKPDNFPLALLFRNGEQQ--P-LWPSSSSRS 259 (606)
T ss_pred eEEEEecCCc-------ccHHHHHHhhccCC-CcceEEEecchhccccccCCCCchhhhhhcCCccc--c-cccccccHH
Confidence 44444 2221 11234444444332 2333333 433333345899999999999999874 2 233345566
Q ss_pred HHHHHHHhcCCCCccccCCCCCCCC
Q 021468 258 ALYKFLKKNASIPFKIQKPTSAPKT 282 (312)
Q Consensus 258 ~l~~fi~~~~~~~~~~~~~~~~~~~ 282 (312)
...+-|.+.++.....+.|...+..
T Consensus 260 ~y~~~I~~~lg~~~~a~~pt~~p~~ 284 (606)
T KOG1731|consen 260 AYVKKIDDLLGDKNEASGPTLHPIT 284 (606)
T ss_pred HHHHHHHHHhcCccccCCCCcCccc
Confidence 7777888877766666665444433
No 85
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.46 E-value=2.1e-13 Score=99.98 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=73.9
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCC-CCccccchhhhhCCCCCCCcEEEEEcCCCCceeccC
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD-NEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD 124 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~-~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~ 124 (312)
+++.++|.||++| ++|+.+.|.|+++++.+.+ +.|+.||++ + ++.++++|+|.++ |++++|++| ....|.
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~---~~~l~~~~~V~~~--PT~~lf~~g--~~~~~~ 88 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSI---KPSLLSRYGVVGF--PTILLFNST--PRVRYN 88 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCC---CHHHHHhcCCeec--CEEEEEcCC--ceeEec
Confidence 5678889999999 9999999999999999987 889999988 5 6799999999999 999999877 456889
Q ss_pred CCCCHHHHHHHH
Q 021468 125 GELTLDKIKTFG 136 (312)
Q Consensus 125 g~~~~~~i~~fi 136 (312)
|.++.++|.+|+
T Consensus 89 G~~~~~~l~~f~ 100 (100)
T cd02999 89 GTRTLDSLAAFY 100 (100)
T ss_pred CCCCHHHHHhhC
Confidence 999999999985
No 86
>PRK10996 thioredoxin 2; Provisional
Probab=99.45 E-value=4e-13 Score=104.65 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=91.1
Q ss_pred CceEEeCCCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcE
Q 021468 31 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 109 (312)
Q Consensus 31 ~~v~~lt~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~ 109 (312)
..+.+++.++|+.++..++.++|.||++| ++|+.+.|.|.+++.++.+.+.|+.+|+++ ++.++++|+|.++ |+
T Consensus 35 ~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~---~~~l~~~~~V~~~--Pt 109 (139)
T PRK10996 35 GEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA---ERELSARFRIRSI--PT 109 (139)
T ss_pred CCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC---CHHHHHhcCCCcc--CE
Confidence 34567888899998888888999999999 999999999999999999889999999988 6699999999999 99
Q ss_pred EEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021468 110 LAYTGNDDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 110 ~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
+++|.+|+ ....+.|..+.+.|.+|+.+.
T Consensus 110 lii~~~G~-~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 110 IMIFKNGQ-VVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEEECCE-EEEEEcCCCCHHHHHHHHHHh
Confidence 99998765 344668889999999999875
No 87
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.44 E-value=5e-13 Score=98.69 Aligned_cols=96 Identities=38% Similarity=0.493 Sum_probs=78.6
Q ss_pred ccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCc
Q 021468 41 APSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 119 (312)
Q Consensus 41 ~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~ 119 (312)
+......+.+++++|+++| ++|+.+.|.++++|++|++++.|++||+++ ++.+++.|||.+...|+++++..+.+.
T Consensus 5 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~---~~~~~~~~~i~~~~~P~~~~~~~~~~~ 81 (103)
T cd02982 5 FFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD---FGRHLEYFGLKEEDLPVIAIINLSDGK 81 (103)
T ss_pred HhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh---hHHHHHHcCCChhhCCEEEEEeccccc
Confidence 3333334568888899999 899999999999999999999999999998 668999999993233999999984434
Q ss_pred eeccCCC-CCHHHHHHHHHHH
Q 021468 120 KHILDGE-LTLDKIKTFGEDF 139 (312)
Q Consensus 120 ~~~~~g~-~~~~~i~~fi~~~ 139 (312)
++.+.+. .+.++|.+|+.++
T Consensus 82 k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 82 KYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred ccCCCccccCHHHHHHHHHhh
Confidence 5666544 5999999999886
No 88
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.44 E-value=1.4e-13 Score=115.31 Aligned_cols=105 Identities=26% Similarity=0.509 Sum_probs=90.7
Q ss_pred eCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCC---CcEEEEEEeCCCccc--ccCCCCCCceEEEEe
Q 021468 165 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---DSIVIAKMDGTTNEH--HRAKSDGFPTILFFP 239 (312)
Q Consensus 165 ~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~---~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~ 239 (312)
+..+++..+ +....++|.|||+||+.++.++|.|.+.|..++.. ..+.+++|||+.+.. .+|.|..+||+.+|+
T Consensus 2 t~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 345666644 66899999999999999999999999999987743 479999999999887 899999999999999
Q ss_pred CCCcccCceeeccCcCHHHHHHHHHhcCCCCcc
Q 021468 240 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFK 272 (312)
Q Consensus 240 ~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~ 272 (312)
+|... .-.|.|.++.+.|.+||++.+..+++
T Consensus 81 nG~~~--~rEYRg~RsVeaL~efi~kq~s~~i~ 111 (375)
T KOG0912|consen 81 NGEMM--KREYRGQRSVEALIEFIEKQLSDPIN 111 (375)
T ss_pred ccchh--hhhhccchhHHHHHHHHHHHhccHHH
Confidence 99774 23799999999999999999886644
No 89
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.44 E-value=6.2e-13 Score=96.89 Aligned_cols=92 Identities=18% Similarity=0.344 Sum_probs=78.2
Q ss_pred cccccc-cC-CCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCC
Q 021468 40 NAPSVF-ES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 116 (312)
Q Consensus 40 ~~~~~~-~~-~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~ 116 (312)
+|++.+ .. +.+++|.||++| ++|+.+.|.|.+++..+.+.+.|+.||++. ++.++++|+|.++ |+++++.+|
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~---~~~l~~~~~i~~~--Pt~~~~~~g 76 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA---QPQIAQQFGVQAL--PTVYLFAAG 76 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC---CHHHHHHcCCCCC--CEEEEEeCC
Confidence 455544 23 568888999999 999999999999999999889999999999 6699999999999 999999866
Q ss_pred CCceeccCCCCCHHHHHHHHH
Q 021468 117 DAKKHILDGELTLDKIKTFGE 137 (312)
Q Consensus 117 ~~~~~~~~g~~~~~~i~~fi~ 137 (312)
. ....+.|..+.+.|..|++
T Consensus 77 ~-~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 77 Q-PVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred E-EeeeecCCCCHHHHHHHhC
Confidence 4 3345789999999999873
No 90
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.43 E-value=3.1e-13 Score=98.89 Aligned_cols=97 Identities=19% Similarity=0.299 Sum_probs=85.9
Q ss_pred EeCCCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHc--CCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEE
Q 021468 35 IFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSF--KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA 111 (312)
Q Consensus 35 ~lt~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~--~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~ 111 (312)
+++.++|...+..+..++|+||++| +.|+.+.+.|.+++..+ .+.+.|+.+||+. +..++++|+|.++ |+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~--Pt~~ 76 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---NNDLCSEYGVRGY--PTIK 76 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---hHHHHHhCCCCCC--CEEE
Confidence 4677788888888888999999999 99999999999999999 5789999999998 6799999999998 9999
Q ss_pred EEcCCCCceeccCCCCCHHHHHHHH
Q 021468 112 YTGNDDAKKHILDGELTLDKIKTFG 136 (312)
Q Consensus 112 ~~~~~~~~~~~~~g~~~~~~i~~fi 136 (312)
++.+++.....|.|..+.++|.+|+
T Consensus 77 ~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 77 LFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred EEcCCCcccccCCCCcCHHHHHhhC
Confidence 9988754566788999999998874
No 91
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.42 E-value=3.6e-13 Score=100.84 Aligned_cols=98 Identities=10% Similarity=0.083 Sum_probs=81.3
Q ss_pred EeCCCcccc-cc--cCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCccccchhhhhCCCCCCCcE
Q 021468 35 IFTRENAPS-VF--ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 109 (312)
Q Consensus 35 ~lt~~~~~~-~~--~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~ 109 (312)
.++.++|.+ ++ ..+.+++|.||++| ++|+.+.|.|.++++++.+ .+.|+.|||+. .+.+++++||.++ |+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~---~~~l~~~~~V~~~--Pt 82 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH---ERRLARKLGAHSV--PA 82 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc---cHHHHHHcCCccC--CE
Confidence 344555553 33 25678899999999 9999999999999999986 49999999998 5699999999999 99
Q ss_pred EEEEcCCCCceeccCCCCCHHHHHHHHHH
Q 021468 110 LAYTGNDDAKKHILDGELTLDKIKTFGED 138 (312)
Q Consensus 110 ~~~~~~~~~~~~~~~g~~~~~~i~~fi~~ 138 (312)
++++..|. ....+.|..+.+.|.+|+++
T Consensus 83 ~~i~~~g~-~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 83 IVGIINGQ-VTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEEEECCE-EEEEecCCCCHHHHHHHHhc
Confidence 99998775 44456888999999999976
No 92
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.42 E-value=6.5e-13 Score=100.79 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=75.4
Q ss_pred eEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-------------ccC
Q 021468 161 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------------HRA 227 (312)
Q Consensus 161 v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------------~~~ 227 (312)
+..++.+.|.+.+ .+++.++|+|+++||++|+.+.|.|.+++++. ++.++.+|.+.+.. ..+
T Consensus 8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 4567778888876 56788999999999999999999999999983 35677777764421 223
Q ss_pred ----CCCCCceEEEEeCCCcccCceeecc-CcCHHHHHHHHH
Q 021468 228 ----KSDGFPTILFFPAGNKSFDPINVDV-DRTVVALYKFLK 264 (312)
Q Consensus 228 ----~i~~~Pt~~~~~~g~~~~~~~~y~g-~~~~~~l~~fi~ 264 (312)
++.++||+++|++|+.+. +..| ..+.++|.+|+.
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~v~---~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQVS---VRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCcccCCCCCEEEEEeCCeEEE---EEeCCCCCHHHHHHHhh
Confidence 466799999999999875 6667 567899998874
No 93
>PTZ00062 glutaredoxin; Provisional
Probab=99.42 E-value=1.3e-12 Score=107.26 Aligned_cols=160 Identities=16% Similarity=0.228 Sum_probs=107.3
Q ss_pred CcccccccCC-CccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCC
Q 021468 39 ENAPSVFESP-IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 116 (312)
Q Consensus 39 ~~~~~~~~~~-~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~ 116 (312)
+.+.+++..+ ...+++|+++| ++|+.+.|++.+|+++|.. +.|+.||.+ |+|.+. |+|++|++|
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-~~F~~V~~d-----------~~V~~v--Ptfv~~~~g 72 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-LEFYVVNLA-----------DANNEY--GVFEFYQNS 72 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-cEEEEEccc-----------cCcccc--eEEEEEECC
Confidence 3455555543 46677788999 9999999999999999977 999999964 899999 999999988
Q ss_pred CCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCccchhhhhcCCCcEEEEEE----cCCChhh
Q 021468 117 DAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIY----APWCGHC 192 (312)
Q Consensus 117 ~~~~~~~~g~~~~~~i~~fi~~~l~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~i~~~~k~~lV~f~----~~~C~~C 192 (312)
+... ++.| .++..|.+++..+....- .. ...+-..+++ +..+++|+-- .|+|++|
T Consensus 73 ~~i~-r~~G-~~~~~~~~~~~~~~~~~~----------------~~-~~~~~v~~li--~~~~Vvvf~Kg~~~~p~C~~C 131 (204)
T PTZ00062 73 QLIN-SLEG-CNTSTLVSFIRGWAQKGS----------------SE-DTVEKIERLI--RNHKILLFMKGSKTFPFCRFS 131 (204)
T ss_pred EEEe-eeeC-CCHHHHHHHHHHHcCCCC----------------HH-HHHHHHHHHH--hcCCEEEEEccCCCCCCChhH
Confidence 7432 3344 679999999998865210 00 0111222222 3344555433 2799999
Q ss_pred hcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--c---c-CCCCCCceEEEEeCCCc
Q 021468 193 QAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R-AKSDGFPTILFFPAGNK 243 (312)
Q Consensus 193 ~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~---~-~~i~~~Pt~~~~~~g~~ 243 (312)
+.+...|.+. ++.+..+|+..... . + -+-..+|.+++ +|+.
T Consensus 132 ~~~k~~L~~~--------~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~~ 178 (204)
T PTZ00062 132 NAVVNMLNSS--------GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGEL 178 (204)
T ss_pred HHHHHHHHHc--------CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCEE
Confidence 9988777754 35666778776543 1 1 23446676654 4543
No 94
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.41 E-value=9.3e-13 Score=120.45 Aligned_cols=107 Identities=10% Similarity=0.138 Sum_probs=91.7
Q ss_pred CCCceEEeCCCccccccc---CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCe-EEEEEEeCCCCccccchh-hhhCC
Q 021468 29 KLPLVTIFTRENAPSVFE---SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVS-EYFGI 102 (312)
Q Consensus 29 ~~~~v~~lt~~~~~~~~~---~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~-~~~~v 102 (312)
..+.|.+||+.+|+.++. .+..++|.||++| ++|+.+.|.|+++|.+|.+. +.|+.|||+.+. ..++ +.|+|
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~--~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ--KEFAKQELQL 426 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc--cHHHHHHcCC
Confidence 355889999999999875 7778899999999 99999999999999999875 899999998742 2454 78999
Q ss_pred CCCCCcEEEEEcCCCCceeccC-CCCCHHHHHHHHHHH
Q 021468 103 TGEAPKVLAYTGNDDAKKHILD-GELTLDKIKTFGEDF 139 (312)
Q Consensus 103 ~~~~~P~~~~~~~~~~~~~~~~-g~~~~~~i~~fi~~~ 139 (312)
.++ |++++|.++......|. |.++.++|..|++..
T Consensus 427 ~~~--PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 GSF--PTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred Ccc--ceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 999 99999998876667887 589999999999753
No 95
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.41 E-value=1.4e-12 Score=93.72 Aligned_cols=89 Identities=30% Similarity=0.591 Sum_probs=74.8
Q ss_pred cchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCccc
Q 021468 168 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSF 245 (312)
Q Consensus 168 ~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~ 245 (312)
+|...+. ..++++|+||++||+.|+.+.+.+.+++.. . .++.++.+|++.... ..+++.++|++++|++|+.+.
T Consensus 2 ~~~~~~~-~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELIK-SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y--PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHHh-cCCcEEEEEECCCChhHHHhhHHHHHHHHH-C--CCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 4566553 448999999999999999999999999988 2 369999999998665 789999999999999987654
Q ss_pred CceeeccCcCHHHHHHHH
Q 021468 246 DPINVDVDRTVVALYKFL 263 (312)
Q Consensus 246 ~~~~y~g~~~~~~l~~fi 263 (312)
.+.|..+.+.|..||
T Consensus 78 ---~~~g~~~~~~l~~~i 92 (93)
T cd02947 78 ---RVVGADPKEELEEFL 92 (93)
T ss_pred ---EEecCCCHHHHHHHh
Confidence 777877888888887
No 96
>PTZ00062 glutaredoxin; Provisional
Probab=99.40 E-value=1.1e-12 Score=107.67 Aligned_cols=91 Identities=9% Similarity=0.136 Sum_probs=78.4
Q ss_pred eCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCCCceEEEEeCCCcc
Q 021468 165 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKS 244 (312)
Q Consensus 165 ~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~i~~~Pt~~~~~~g~~~ 244 (312)
+.+.|.+.+..+.+.++++||++||++|+.|.+.+.+++..+.. +.|+.||.+ ++|.++|++++|++|+.+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~---~~F~~V~~d------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS---LEFYVVNLA------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC---cEEEEEccc------cCcccceEEEEEECCEEE
Confidence 34667777654457799999999999999999999999999865 999999977 999999999999999988
Q ss_pred cCceeeccCcCHHHHHHHHHhcCC
Q 021468 245 FDPINVDVDRTVVALYKFLKKNAS 268 (312)
Q Consensus 245 ~~~~~y~g~~~~~~l~~fi~~~~~ 268 (312)
+ ++.|. +...|..+++.+..
T Consensus 76 ~---r~~G~-~~~~~~~~~~~~~~ 95 (204)
T PTZ00062 76 N---SLEGC-NTSTLVSFIRGWAQ 95 (204)
T ss_pred e---eeeCC-CHHHHHHHHHHHcC
Confidence 7 77774 58899999988865
No 97
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.40 E-value=1.4e-12 Score=95.83 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=85.3
Q ss_pred CceEEeCCCcccccccCCCccEEEEEeeC---CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCC
Q 021468 31 PLVTIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP 107 (312)
Q Consensus 31 ~~v~~lt~~~~~~~~~~~~~~~i~f~~~~---~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~ 107 (312)
..+.+++..+|++.+..+...++.|+++| ++|..+.|.|.++|++|.+.+.|+.+|+++ ++.++.+|||++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~---~~~la~~f~V~sI-- 84 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD---EQALAARFGVLRT-- 84 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC---CHHHHHHcCCCcC--
Confidence 35678999999999988889999999996 999999999999999999999999999999 6699999999999
Q ss_pred cEEEEEcCCCCceeccCCCCCHHHHH
Q 021468 108 KVLAYTGNDDAKKHILDGELTLDKIK 133 (312)
Q Consensus 108 P~~~~~~~~~~~~~~~~g~~~~~~i~ 133 (312)
|++++|.+|+ ....+.|..+.+++.
T Consensus 85 PTli~fkdGk-~v~~~~G~~~~~e~~ 109 (111)
T cd02965 85 PALLFFRDGR-YVGVLAGIRDWDEYV 109 (111)
T ss_pred CEEEEEECCE-EEEEEeCccCHHHHh
Confidence 9999999886 333557877777664
No 98
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.5e-12 Score=109.89 Aligned_cols=107 Identities=18% Similarity=0.239 Sum_probs=92.9
Q ss_pred CCceEEeCCCcccccc---cCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCC
Q 021468 30 LPLVTIFTRENAPSVF---ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE 105 (312)
Q Consensus 30 ~~~v~~lt~~~~~~~~---~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~ 105 (312)
.+.|.++|+.||...+ +...+++|.||++| ++|+++.|.+++++..|.|++.+++|||+. ++.+...|||+..
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~---~p~vAaqfgiqsI 98 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA---EPMVAAQFGVQSI 98 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc---chhHHHHhCcCcC
Confidence 3458899999998754 33346778899999 999999999999999999999999999999 6799999999999
Q ss_pred CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021468 106 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG 142 (312)
Q Consensus 106 ~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~~ 142 (312)
|+++.|..|... --|.|......|.+|+.++++.
T Consensus 99 --PtV~af~dGqpV-dgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 99 --PTVYAFKDGQPV-DGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred --CeEEEeeCCcCc-cccCCCCcHHHHHHHHHHhcCh
Confidence 999999888732 3578989999999999999874
No 99
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.38 E-value=3.9e-12 Score=99.38 Aligned_cols=102 Identities=10% Similarity=0.169 Sum_probs=86.3
Q ss_pred CcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCC
Q 021468 39 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD 117 (312)
Q Consensus 39 ~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~ 117 (312)
..++.....+++++|.||++| ++|+.+.|.|.+++..+.+.+.|+.||.+... +..+++.|+|.++ |++++|+.++
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~V~~i--Pt~v~~~~~G 87 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYRVDGI--PHFVFLDREG 87 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcCCCCC--CEEEEECCCC
Confidence 355666778889999999999 99999999999999999888899999887654 5688999999999 9999996443
Q ss_pred CceeccCCCCCHHHHHHHHHHHhcCC
Q 021468 118 AKKHILDGELTLDKIKTFGEDFLEGK 143 (312)
Q Consensus 118 ~~~~~~~g~~~~~~i~~fi~~~l~~~ 143 (312)
.....+.|..+.+.|.+++.+.+.+.
T Consensus 88 ~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 88 NEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 34556789899999999999998765
No 100
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.36 E-value=2.9e-12 Score=94.00 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=81.6
Q ss_pred CCCcccccccC-CCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEc
Q 021468 37 TRENAPSVFES-PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG 114 (312)
Q Consensus 37 t~~~~~~~~~~-~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~ 114 (312)
+.+++...+.. +...+|+||++| +.|+.+.+.|++++..+.+.+.|+.+|++. ++.++++|+|..+ |+++++.
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~~--P~~~~~~ 76 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE---NPDIAAKYGIRSI--PTLLLFK 76 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC---CHHHHHHcCCCcC--CEEEEEe
Confidence 44556665544 447788899999 999999999999999999889999999998 5699999999988 9999997
Q ss_pred CCCCceeccCCCCCHHHHHHHHHHH
Q 021468 115 NDDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 115 ~~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
.|. ....+.|..+.+.|.+|+++.
T Consensus 77 ~g~-~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 77 NGK-EVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred CCc-EeeeecCCCCHHHHHHHHHhh
Confidence 765 345667889999999999875
No 101
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.36 E-value=4.2e-12 Score=93.96 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=79.3
Q ss_pred CcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC---eEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEc
Q 021468 39 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG 114 (312)
Q Consensus 39 ~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~ 114 (312)
++|++. ..++.++|.||++| ++|+.+.|.|.+++..+++ .+.++.+||+. ++.+++.|+|.++ |+++++.
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~---~~~~~~~~~I~~~--Pt~~l~~ 80 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA---YSSIASEFGVRGY--PTIKLLK 80 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc---CHhHHhhcCCccc--cEEEEEc
Confidence 566664 44568889999999 9999999999999999953 49999999988 5699999999999 9999997
Q ss_pred CCCCceeccCCCCCHHHHHHHHHHH
Q 021468 115 NDDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 115 ~~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
++. ...+.|..+.+.|..|+++.
T Consensus 81 ~~~--~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 81 GDL--AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred CCC--ceeecCCCCHHHHHHHHHhh
Confidence 653 45688999999999999874
No 102
>PLN02309 5'-adenylylsulfate reductase
Probab=99.36 E-value=2.9e-12 Score=117.22 Aligned_cols=105 Identities=11% Similarity=0.160 Sum_probs=91.9
Q ss_pred CCceEEeCCCcccccc---cCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCe-EEEEEEeCC-CCccccchhh-hhCC
Q 021468 30 LPLVTIFTRENAPSVF---ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD-NEDVGKPVSE-YFGI 102 (312)
Q Consensus 30 ~~~v~~lt~~~~~~~~---~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~-i~f~~vd~~-~~~~~~~l~~-~~~v 102 (312)
...|.+|+.++|+.++ ..++.++|.||++| ++|+.+.|.|.++|.+|.+. +.|+.+||+ . +..+|. .|+|
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~---~~~la~~~~~I 420 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD---QKEFAKQELQL 420 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc---chHHHHhhCCC
Confidence 4578899999999876 47778899999999 99999999999999999864 999999999 5 458886 6999
Q ss_pred CCCCCcEEEEEcCCCCceeccCC-CCCHHHHHHHHHHH
Q 021468 103 TGEAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGEDF 139 (312)
Q Consensus 103 ~~~~~P~~~~~~~~~~~~~~~~g-~~~~~~i~~fi~~~ 139 (312)
.++ |++++|.++......|.| .++.++|.+|+...
T Consensus 421 ~~~--PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 GSF--PTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred cee--eEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999 999999888767788975 79999999999874
No 103
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.36 E-value=3.9e-12 Score=93.85 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=73.2
Q ss_pred CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCC--CCceEEEEeC--CCcccCceee
Q 021468 177 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD--GFPTILFFPA--GNKSFDPINV 250 (312)
Q Consensus 177 ~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~--~~Pt~~~~~~--g~~~~~~~~y 250 (312)
+++++++|+++||++|..+.+.+.++|+++++ .+.|+.+|++.+.. ..+++. ++|++++++. |.+. .+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~----~~ 85 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKY----LM 85 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEeccccccc----CC
Confidence 68999999999999999999999999999997 69999999998765 789999 9999999988 4443 34
Q ss_pred c-cCcCHHHHHHHHHhc
Q 021468 251 D-VDRTVVALYKFLKKN 266 (312)
Q Consensus 251 ~-g~~~~~~l~~fi~~~ 266 (312)
. |..+.+.|.+||.+.
T Consensus 86 ~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 86 PEEELTAESLEEFVEDF 102 (103)
T ss_pred CccccCHHHHHHHHHhh
Confidence 4 455899999999875
No 104
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.35 E-value=4.4e-12 Score=95.29 Aligned_cols=100 Identities=14% Similarity=0.223 Sum_probs=80.2
Q ss_pred ceEEeCCCcccccccCCC-ccEEEEEeeC-CchhhHHHHHHHHHHHcCC---eEEEEEEeCCCCccccchhhhhCCCCCC
Q 021468 32 LVTIFTRENAPSVFESPI-KNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEA 106 (312)
Q Consensus 32 ~v~~lt~~~~~~~~~~~~-~~~i~f~~~~-~~c~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~~v~~~~ 106 (312)
.+.+++..+|...+..+. +++|.||++| ++|+.+.|.|++++..+.+ .+.|+.+||+... ++.+|+.|+|+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~i~~~- 79 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFGVTGY- 79 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCCCCCC-
Confidence 577899999998876554 7778899999 9999999999999998863 6999999997654 6789999999999
Q ss_pred CcEEEEEcCCCCc---eeccCCC-CCHHHHHH
Q 021468 107 PKVLAYTGNDDAK---KHILDGE-LTLDKIKT 134 (312)
Q Consensus 107 ~P~~~~~~~~~~~---~~~~~g~-~~~~~i~~ 134 (312)
|++.+|..+... ...|.|. +..++++.
T Consensus 80 -Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 80 -PTLRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred -CEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 999999888621 2345665 56666543
No 105
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.35 E-value=3.6e-12 Score=97.59 Aligned_cols=90 Identities=14% Similarity=0.256 Sum_probs=71.5
Q ss_pred cCC-CcEEEEEEcCCChhhhcchHHHH---HHHHHhcCCCcEEEEEEeCCCc-------------cc--ccCCCCCCceE
Q 021468 175 DES-KDVLLEIYAPWCGHCQAFEPTYN---KLAKHLRGVDSIVIAKMDGTTN-------------EH--HRAKSDGFPTI 235 (312)
Q Consensus 175 ~~~-k~~lV~f~~~~C~~C~~~~~~~~---~la~~~~~~~~v~~~~vd~~~~-------------~~--~~~~i~~~Pt~ 235 (312)
..+ ++++|+||++||++|+.+.+.+. .+...+.+ .+.++.+|.+.. .. ..|++.++|++
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~ 88 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTV 88 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEE
Confidence 456 99999999999999999999885 56666654 588889998764 11 57899999999
Q ss_pred EEEeCC--CcccCceeeccCcCHHHHHHHHHhcCCC
Q 021468 236 LFFPAG--NKSFDPINVDVDRTVVALYKFLKKNASI 269 (312)
Q Consensus 236 ~~~~~g--~~~~~~~~y~g~~~~~~l~~fi~~~~~~ 269 (312)
++|..+ +.+ .++.|..+.+.+.++|+..+..
T Consensus 89 ~~~~~~gg~~~---~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 89 IFLDPEGGKEI---ARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred EEEcCCCCcee---EEecCCCCHHHHHHHHHHHHhh
Confidence 999764 443 3788888889999988877553
No 106
>PHA02278 thioredoxin-like protein
Probab=99.33 E-value=3e-12 Score=93.97 Aligned_cols=94 Identities=14% Similarity=0.111 Sum_probs=77.2
Q ss_pred CcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc-cccchhhhhCCCCCCCcEEEEEcCC
Q 021468 39 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTGND 116 (312)
Q Consensus 39 ~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~-~~~~l~~~~~v~~~~~P~~~~~~~~ 116 (312)
++|.+.+..+.+++|.||++| ++|+.+.|.|++++.++.+.+.|+.+|++.+. +++.++++|+|.+. |++++|.+|
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~i--PT~i~fk~G 82 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMST--PVLIGYKDG 82 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccc--cEEEEEECC
Confidence 356666777889999999999 99999999999999987777889999998731 12579999999999 999999988
Q ss_pred CCceeccCCCCCHHHHHHH
Q 021468 117 DAKKHILDGELTLDKIKTF 135 (312)
Q Consensus 117 ~~~~~~~~g~~~~~~i~~f 135 (312)
+. .....|..+.+.|.++
T Consensus 83 ~~-v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 83 QL-VKKYEDQVTPMQLQEL 100 (103)
T ss_pred EE-EEEEeCCCCHHHHHhh
Confidence 63 3355787888887765
No 107
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.32 E-value=3.1e-12 Score=94.73 Aligned_cols=74 Identities=5% Similarity=-0.004 Sum_probs=64.9
Q ss_pred ccccccc--CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCC
Q 021468 40 NAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 116 (312)
Q Consensus 40 ~~~~~~~--~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~ 116 (312)
+|+..+. .+.+.+|.||++| ++|+.+.|.|.++|.++.+.+.|+.||+++ ++.++..|||.+. |++++|.+|
T Consensus 4 ~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~---~~~la~~~~V~~i--PTf~~fk~G 78 (114)
T cd02954 4 AVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE---VPDFNKMYELYDP--PTVMFFFRN 78 (114)
T ss_pred HHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC---CHHHHHHcCCCCC--CEEEEEECC
Confidence 4445443 4557788899999 999999999999999999989999999999 7799999999998 999999988
Q ss_pred CC
Q 021468 117 DA 118 (312)
Q Consensus 117 ~~ 118 (312)
+.
T Consensus 79 ~~ 80 (114)
T cd02954 79 KH 80 (114)
T ss_pred EE
Confidence 73
No 108
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.32 E-value=6.2e-12 Score=94.23 Aligned_cols=92 Identities=18% Similarity=0.294 Sum_probs=70.3
Q ss_pred CccchhhhhcC-CCcEEEEEEc-------CCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc-------c--ccCC
Q 021468 166 GNNFDEIVLDE-SKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-------H--HRAK 228 (312)
Q Consensus 166 ~~~f~~~i~~~-~k~~lV~f~~-------~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-------~--~~~~ 228 (312)
.++|.+.+... +++++|.||| +||++|+.+.|.+++++..+.+ ++.|+.||++... . ..++
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhccC
Confidence 36777777543 5899999999 9999999999999999999885 5889999997632 2 5788
Q ss_pred CC-CCceEEEEeCCCcccCceeeccCcCHHHHHHHH
Q 021468 229 SD-GFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 229 i~-~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi 263 (312)
|. ++||+++|+.|.++. .. .-.+...+..|+
T Consensus 87 I~~~iPT~~~~~~~~~l~---~~-~c~~~~~~~~~~ 118 (119)
T cd02952 87 LTTGVPTLLRWKTPQRLV---ED-ECLQADLVEMFF 118 (119)
T ss_pred cccCCCEEEEEcCCceec---ch-hhcCHHHHHHhh
Confidence 98 999999998776531 11 134556665554
No 109
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.29 E-value=8.3e-12 Score=91.97 Aligned_cols=94 Identities=9% Similarity=0.124 Sum_probs=78.1
Q ss_pred CCCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEc
Q 021468 37 TRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG 114 (312)
Q Consensus 37 t~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~ 114 (312)
|.++|...+..+.+.+|.||++| ++|+.+.|.|.+++..+++ .+.|+.+|++. ..+++.|+|+++ |++++++
T Consensus 6 ~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~----~~~~~~~~v~~~--Pt~~~~~ 79 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT----IDTLKRYRGKCE--PTFLFYK 79 (102)
T ss_pred CHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC----HHHHHHcCCCcC--cEEEEEE
Confidence 55667777778888899999999 9999999999999999985 48899999983 378999999999 9999998
Q ss_pred CCCCceeccCCCCCHHHHHHHHHH
Q 021468 115 NDDAKKHILDGELTLDKIKTFGED 138 (312)
Q Consensus 115 ~~~~~~~~~~g~~~~~~i~~fi~~ 138 (312)
+|... ....| .+.+.|.++|.+
T Consensus 80 ~g~~~-~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 80 NGELV-AVIRG-ANAPLLNKTITE 101 (102)
T ss_pred CCEEE-EEEec-CChHHHHHHHhh
Confidence 77522 23345 588999988875
No 110
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.29 E-value=4.7e-12 Score=95.46 Aligned_cols=91 Identities=23% Similarity=0.465 Sum_probs=63.2
Q ss_pred hcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCC--CceEEEEe-CCCcccCcee
Q 021468 174 LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDG--FPTILFFP-AGNKSFDPIN 249 (312)
Q Consensus 174 ~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~i~~--~Pt~~~~~-~g~~~~~~~~ 249 (312)
...+++++|.||++||++|+.+.+.+.+.+.......++..+.+|.+.... ..|++.+ +|++++|. +|+.+.+.+.
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence 456899999999999999999999999987755432245555555433232 6788876 99999995 7877654455
Q ss_pred eccCcCHHHHHHHHH
Q 021468 250 VDVDRTVVALYKFLK 264 (312)
Q Consensus 250 y~g~~~~~~l~~fi~ 264 (312)
..|..+...+..+|.
T Consensus 96 ~~~~~~~~~f~~~~~ 110 (117)
T cd02959 96 KKGNPNYKYFYSSAA 110 (117)
T ss_pred CCCCccccccCCCHH
Confidence 556555444444443
No 111
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.29 E-value=8e-12 Score=92.22 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=74.6
Q ss_pred CcccccccC--CCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcC
Q 021468 39 ENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN 115 (312)
Q Consensus 39 ~~~~~~~~~--~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~ 115 (312)
++|+..+.. ++.++|.||++| ++|+.+.|.|.++++++ +.+.|+.||+++....+.++++|+|.++ |+++++.+
T Consensus 4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~--Pt~~~~~~ 80 (103)
T cd02985 4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEV--PHFLFYKD 80 (103)
T ss_pred HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcC--CEEEEEeC
Confidence 455555543 677888899999 99999999999999999 5599999999874212489999999999 99999987
Q ss_pred CCCceeccCCCCCHHHHHHHHHH
Q 021468 116 DDAKKHILDGELTLDKIKTFGED 138 (312)
Q Consensus 116 ~~~~~~~~~g~~~~~~i~~fi~~ 138 (312)
|. ....+.| ...++|.+-+..
T Consensus 81 G~-~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 81 GE-KIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred Ce-EEEEEeC-CCHHHHHHHHHh
Confidence 75 3455666 666777766654
No 112
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.28 E-value=2.6e-11 Score=90.85 Aligned_cols=100 Identities=10% Similarity=0.030 Sum_probs=82.2
Q ss_pred CceEEeCC-CcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCc
Q 021468 31 PLVTIFTR-ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPK 108 (312)
Q Consensus 31 ~~v~~lt~-~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P 108 (312)
..+..++. +.|...+..+...+|.||++| ++|+.+.|.|+++++++.+ +.|+.||+++ ++.++++|+|... |
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~---~~~l~~~~~v~~v--P 77 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEK---APFLVEKLNIKVL--P 77 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEccc---CHHHHHHCCCccC--C
Confidence 45666777 678888888888899999999 9999999999999999987 8999999998 6699999999988 9
Q ss_pred EEEEEcCCCCcee-----ccC--CCCCHHHHHHHH
Q 021468 109 VLAYTGNDDAKKH-----ILD--GELTLDKIKTFG 136 (312)
Q Consensus 109 ~~~~~~~~~~~~~-----~~~--g~~~~~~i~~fi 136 (312)
++++|.+|..... .+. +..+.+++.+|+
T Consensus 78 t~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 78 TVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9999998863211 122 356788887775
No 113
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.28 E-value=2.5e-11 Score=85.59 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=67.0
Q ss_pred EEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeeccCcCHH
Q 021468 180 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV 257 (312)
Q Consensus 180 ~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~ 257 (312)
.+..||++||++|+.+.+.+.+++..+.. .+.+..+|++.+.. .++++.++|++++ +|+. .+.|..+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~-----~~~G~~~~~ 72 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV-----EFIGAPTKE 72 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE-----EEecCCCHH
Confidence 47789999999999999999999999875 58899999887766 6899999999986 5542 788988999
Q ss_pred HHHHHHHhc
Q 021468 258 ALYKFLKKN 266 (312)
Q Consensus 258 ~l~~fi~~~ 266 (312)
.|.++|.+.
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 999998765
No 114
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.27 E-value=2.6e-11 Score=90.36 Aligned_cols=107 Identities=23% Similarity=0.183 Sum_probs=93.4
Q ss_pred eEEeCCCcccccccCCCccEEEEEeeCCchhhHHHHHHHHHHH---cCCeEEEEEEeCCCCccccchhhhhCCCCCCCcE
Q 021468 33 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKS---FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 109 (312)
Q Consensus 33 v~~lt~~~~~~~~~~~~~~~i~f~~~~~~c~~~~~~~~~la~~---~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~ 109 (312)
|.++|.++...++..+.+..++|| .......+...++++|++ ++|++.|+.+|.+... ...+.||+.....|+
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f-~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~---~~~~~fgl~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH-DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFR---HPLLHLGKTPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe-cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh---hHHHHcCCCHhHCCE
Confidence 568899999999999988888888 446678999999999999 9999999999999954 589999999855799
Q ss_pred EEEEcCCCCceec-cCCCCCHHHHHHHHHHHhcCC
Q 021468 110 LAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGK 143 (312)
Q Consensus 110 ~~~~~~~~~~~~~-~~g~~~~~~i~~fi~~~l~~~ 143 (312)
+++...+...+|. +.+..+.++|.+|+++++.|+
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 9999886556777 678899999999999999874
No 115
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.27 E-value=2.2e-11 Score=91.48 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=71.9
Q ss_pred CCceEEeCCCcccccccCC---CccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCC
Q 021468 30 LPLVTIFTRENAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE 105 (312)
Q Consensus 30 ~~~v~~lt~~~~~~~~~~~---~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~ 105 (312)
...+.++++++|.+.+... .+++|.||++| ++|+.+.|.|+++|.++.+ +.|+.||+++ + .++++|+|.+.
T Consensus 3 ~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~---~-~l~~~~~i~~~ 77 (113)
T cd02957 3 FGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEK---A-FLVNYLDIKVL 77 (113)
T ss_pred CceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchh---h-HHHHhcCCCcC
Confidence 3567788888888877554 67788899999 9999999999999999987 8999999987 6 89999999999
Q ss_pred CCcEEEEEcCCCC
Q 021468 106 APKVLAYTGNDDA 118 (312)
Q Consensus 106 ~~P~~~~~~~~~~ 118 (312)
|++++|.+|+.
T Consensus 78 --Pt~~~f~~G~~ 88 (113)
T cd02957 78 --PTLLVYKNGEL 88 (113)
T ss_pred --CEEEEEECCEE
Confidence 99999998863
No 116
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.27 E-value=1.8e-11 Score=96.12 Aligned_cols=83 Identities=16% Similarity=0.237 Sum_probs=72.2
Q ss_pred CceEEeCCCcccccccC--CCccEEEEEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCccccchhhhhCCCC--
Q 021468 31 PLVTIFTRENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITG-- 104 (312)
Q Consensus 31 ~~v~~lt~~~~~~~~~~--~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~~v~~-- 104 (312)
..+.++++++|++.+.. +..++|.||++| ++|+.+.|.|++++.++.+ .+.|+.||+++ ++.++++|+|..
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~---~~~la~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR---FPNVAEKFRVSTSP 104 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC---CHHHHHHcCceecC
Confidence 46788999999887643 346788999999 9999999999999999985 59999999999 679999999987
Q ss_pred ----CCCcEEEEEcCCCC
Q 021468 105 ----EAPKVLAYTGNDDA 118 (312)
Q Consensus 105 ----~~~P~~~~~~~~~~ 118 (312)
+ |++++|.+|+.
T Consensus 105 ~v~~~--PT~ilf~~Gk~ 120 (152)
T cd02962 105 LSKQL--PTIILFQGGKE 120 (152)
T ss_pred CcCCC--CEEEEEECCEE
Confidence 7 99999988763
No 117
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.26 E-value=2.3e-11 Score=93.58 Aligned_cols=102 Identities=9% Similarity=0.018 Sum_probs=80.2
Q ss_pred Cccccccc--CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcC
Q 021468 39 ENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN 115 (312)
Q Consensus 39 ~~~~~~~~--~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~ 115 (312)
+.|++.+. ..+..+|-||++| ++|+.+.|.|+++|+++.+.+.|+.||.++ ++.+++.|+|++. +|++.+|++
T Consensus 12 ~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe---~~dla~~y~I~~~-~t~~~ffk~ 87 (142)
T PLN00410 12 WAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE---VPDFNTMYELYDP-CTVMFFFRN 87 (142)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC---CHHHHHHcCccCC-CcEEEEEEC
Confidence 34555553 4556677799999 999999999999999999999999999999 7799999999865 456658887
Q ss_pred CCCceeccCC--------CCCHHHHHHHHHHHhcCCC
Q 021468 116 DDAKKHILDG--------ELTLDKIKTFGEDFLEGKL 144 (312)
Q Consensus 116 ~~~~~~~~~g--------~~~~~~i~~fi~~~l~~~~ 144 (312)
|....-...| ..+.++|.+-++.++.|..
T Consensus 88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred CeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 7523333345 4788899888888876644
No 118
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.22 E-value=4e-11 Score=88.68 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=79.2
Q ss_pred cccccccCCCccEEEEEeeC-CchhhHHHHH---HHHHHHcCCeEEEEEEeCCCCc-cccchhhhhCCCCCCCcEEEEEc
Q 021468 40 NAPSVFESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTG 114 (312)
Q Consensus 40 ~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~---~~la~~~~~~i~f~~vd~~~~~-~~~~l~~~~~v~~~~~P~~~~~~ 114 (312)
.|.+.+..+++++|+||++| ++|+.+.+.+ .+++..+.+.+.++.+|++... ..+.++++|+|.++ |++++|.
T Consensus 3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~--Pti~~~~ 80 (104)
T cd02953 3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGP--PTYLFYG 80 (104)
T ss_pred HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCC--CEEEEEC
Confidence 45666778888999999999 9999999988 6899999878999999987531 13588999999998 9999998
Q ss_pred C-CCCceeccCCCCCHHHHHHHHH
Q 021468 115 N-DDAKKHILDGELTLDKIKTFGE 137 (312)
Q Consensus 115 ~-~~~~~~~~~g~~~~~~i~~fi~ 137 (312)
. ++.....+.|..+.++|.++++
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHhC
Confidence 5 3345567789999999998873
No 119
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=2e-11 Score=111.03 Aligned_cols=113 Identities=27% Similarity=0.538 Sum_probs=89.4
Q ss_pred CCCCCeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCC-CcEEEEEEeCCCccc----ccCCCC
Q 021468 156 TNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNEH----HRAKSD 230 (312)
Q Consensus 156 ~~~~~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~~----~~~~i~ 230 (312)
.+.++|..|+.++|+..+..+.+..+|.||++||++|+.++|.|+++|+.+... +-+.++.|||..... .+|+|.
T Consensus 36 ~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~ 115 (606)
T KOG1731|consen 36 SPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVS 115 (606)
T ss_pred CCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCC
Confidence 346899999999999999888889999999999999999999999999998875 358999999988654 789999
Q ss_pred CCceEEEEeCCCcc-cCceeeccCcCHHHHHHHHHhcCC
Q 021468 231 GFPTILFFPAGNKS-FDPINVDVDRTVVALYKFLKKNAS 268 (312)
Q Consensus 231 ~~Pt~~~~~~g~~~-~~~~~y~g~~~~~~l~~fi~~~~~ 268 (312)
++|++.+|+.+... ..+..+.|.....++...+.+.+.
T Consensus 116 ~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la 154 (606)
T KOG1731|consen 116 GYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLA 154 (606)
T ss_pred CCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHH
Confidence 99999999766331 112345554445555555554443
No 120
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=7.8e-11 Score=86.56 Aligned_cols=83 Identities=13% Similarity=0.231 Sum_probs=69.5
Q ss_pred CCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC
Q 021468 48 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE 126 (312)
Q Consensus 48 ~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~ 126 (312)
++..++.||++| ++|+.+.|.+.+||.+|.+ +.|++||+++ .+.+++.++|+.. |+|.++++|+.. -.+.|
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde---~~~~~~~~~V~~~--PTf~f~k~g~~~-~~~vG- 92 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE---LEEVAKEFNVKAM--PTFVFYKGGEEV-DEVVG- 92 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc---CHhHHHhcCceEe--eEEEEEECCEEE-EEEec-
Confidence 456677899999 9999999999999999999 9999999998 6799999999999 999999888633 23334
Q ss_pred CCHHHHHHHHHH
Q 021468 127 LTLDKIKTFGED 138 (312)
Q Consensus 127 ~~~~~i~~fi~~ 138 (312)
.+.+.+.+.+..
T Consensus 93 a~~~~l~~~i~~ 104 (106)
T KOG0907|consen 93 ANKAELEKKIAK 104 (106)
T ss_pred CCHHHHHHHHHh
Confidence 555577766654
No 121
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.18 E-value=6.3e-11 Score=86.34 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=72.9
Q ss_pred CcccccccCC--CccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcC
Q 021468 39 ENAPSVFESP--IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN 115 (312)
Q Consensus 39 ~~~~~~~~~~--~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~ 115 (312)
++|+..+... +.++|.||++| .+|+.+.+.|++++.++...+.|+.+|++. ++.++++|+|.++ |++++|.+
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~---~~~~~~~~~i~~~--Pt~~~~~~ 77 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE---LPEISEKFEITAV--PTFVFFRN 77 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc---CHHHHHhcCCccc--cEEEEEEC
Confidence 3455555544 78889999999 999999999999999987789999999987 6699999999998 99999987
Q ss_pred CCCceeccCCCCCHHHHHHHH
Q 021468 116 DDAKKHILDGELTLDKIKTFG 136 (312)
Q Consensus 116 ~~~~~~~~~g~~~~~~i~~fi 136 (312)
|.. .....| .+.+.|.+.|
T Consensus 78 g~~-~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 78 GTI-VDRVSG-ADPKELAKKV 96 (97)
T ss_pred CEE-EEEEeC-CCHHHHHHhh
Confidence 652 223344 5677777655
No 122
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.16 E-value=1.6e-10 Score=86.59 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=76.6
Q ss_pred ccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCC-Cceec
Q 021468 45 FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD-AKKHI 122 (312)
Q Consensus 45 ~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~-~~~~~ 122 (312)
+..+...+++|+++| ++|+.+.|.+++++..+ +.+.|..+|.+. ++.++..|+|.+. |+++++.+|. .....
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~---~~~l~~~~~v~~v--Pt~~i~~~g~~~~~~~ 92 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDE---DKEKAEKYGVERV--PTTIFLQDGGKDGGIR 92 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCc---CHHHHHHcCCCcC--CEEEEEeCCeecceEE
Confidence 344556667788999 99999999999999987 669999999997 6799999999999 9999998754 23346
Q ss_pred cCCCCCHHHHHHHHHHHhc
Q 021468 123 LDGELTLDKIKTFGEDFLE 141 (312)
Q Consensus 123 ~~g~~~~~~i~~fi~~~l~ 141 (312)
+.|....+++.+||...++
T Consensus 93 ~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 93 YYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEecCchHHHHHHHHHHHh
Confidence 7888899999999998865
No 123
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.15 E-value=2.4e-10 Score=83.97 Aligned_cols=90 Identities=12% Similarity=0.014 Sum_probs=73.0
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccC-
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD- 124 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~- 124 (312)
..+..+|-|+++| ++|+.+.|.|.++|.++.+.+.|..||.++ .+.+++.|+|... |++++|.+|++....+.
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe---v~dva~~y~I~am--Ptfvffkngkh~~~d~gt 87 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK---VPVYTQYFDISYI--PSTIFFFNGQHMKVDYGS 87 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc---cHHHHHhcCceeC--cEEEEEECCcEEEEecCC
Confidence 4567777899999 999999999999999998889999999998 7799999999888 99989988876555552
Q ss_pred CC--------CCHHHHHHHHHHHhc
Q 021468 125 GE--------LTLDKIKTFGEDFLE 141 (312)
Q Consensus 125 g~--------~~~~~i~~fi~~~l~ 141 (312)
|. .+.+++.+-++-...
T Consensus 88 ~~~~k~~~~~~~k~~~idi~e~~yr 112 (114)
T cd02986 88 PDHTKFVGSFKTKQDFIDLIEVIYR 112 (114)
T ss_pred CCCcEEEEEcCchhHHHHHHHHHHc
Confidence 21 345667666665433
No 124
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.13 E-value=3.5e-09 Score=91.06 Aligned_cols=213 Identities=15% Similarity=0.174 Sum_probs=135.0
Q ss_pred CceEEeCCCcccccccCCCccEEEEEeeC-Cchhh-----HHHHHHHHHHH-cCC-eEEEEEEeCCCCccccchhhhhCC
Q 021468 31 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEK-----LLPVFEEAAKS-FKG-KLIFVYVQMDNEDVGKPVSEYFGI 102 (312)
Q Consensus 31 ~~v~~lt~~~~~~~~~~~~~~~i~f~~~~-~~c~~-----~~~~~~~la~~-~~~-~i~f~~vd~~~~~~~~~l~~~~~v 102 (312)
..|..||..||.+.+++....+|+|+.+. .+-.. +...+-+||.+ +.. -|.|+.||..+. .++++++|+
T Consensus 34 DRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd---~klAKKLgv 110 (383)
T PF01216_consen 34 DRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD---AKLAKKLGV 110 (383)
T ss_dssp --CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT---HHHHHHHT-
T ss_pred cceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH---HHHHHhcCc
Confidence 47889999999999988777777787776 33222 12223344443 332 399999999994 599999999
Q ss_pred CCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCccchhhhhc-CCCcEE
Q 021468 103 TGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLD-ESKDVL 181 (312)
Q Consensus 103 ~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~i~~-~~k~~l 181 (312)
... +++.+|..|. .+.|.|.++++.|..|+-+.+. .+|..++.+.=.+...+ .....|
T Consensus 111 ~E~--~SiyVfkd~~--~IEydG~~saDtLVeFl~dl~e-----------------dPVeiIn~~~e~~~Fe~ied~~kl 169 (383)
T PF01216_consen 111 EEE--GSIYVFKDGE--VIEYDGERSADTLVEFLLDLLE-----------------DPVEIINNKHELKAFERIEDDIKL 169 (383)
T ss_dssp -ST--TEEEEEETTE--EEEE-S--SHHHHHHHHHHHHS-----------------SSEEEE-SHHHHHHHHH--SS-EE
T ss_pred ccc--CcEEEEECCc--EEEecCccCHHHHHHHHHHhcc-----------------cchhhhcChhhhhhhhhcccceeE
Confidence 998 8888887775 7789999999999999999988 56888887443322222 346777
Q ss_pred EEEEcCC-ChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeecc-CcCHHHH
Q 021468 182 LEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVAL 259 (312)
Q Consensus 182 V~f~~~~-C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~y~g-~~~~~~l 259 (312)
|-|+.+. ..+ ...|.++|..|.. .+.|..+- +..-..++++. .=.+-+|..=.. .|+...| +.+..+|
T Consensus 170 IGyFk~~~s~~----yk~FeeAAe~F~p--~IkFfAtf-d~~vAk~L~lK-~nev~fyepF~~--~pi~ip~~p~~e~e~ 239 (383)
T PF01216_consen 170 IGYFKSEDSEH----YKEFEEAAEHFQP--YIKFFATF-DKKVAKKLGLK-LNEVDFYEPFMD--EPITIPGKPYTEEEL 239 (383)
T ss_dssp EEE-SSTTSHH----HHHHHHHHHHCTT--TSEEEEE--SHHHHHHHT-S-TT-EEEE-TTSS--SEEEESSSS--HHHH
T ss_pred EEEeCCCCcHH----HHHHHHHHHhhcC--ceeEEEEe-cchhhhhcCcc-ccceeeeccccC--CCccCCCCCCCHHHH
Confidence 7777664 333 3467899999987 57776543 33334566664 667788865444 5777777 7788999
Q ss_pred HHHHHhcCCCCccccCCC
Q 021468 260 YKFLKKNASIPFKIQKPT 277 (312)
Q Consensus 260 ~~fi~~~~~~~~~~~~~~ 277 (312)
..||++|-.+..+..++.
T Consensus 240 ~~fi~~h~rptlrkl~~~ 257 (383)
T PF01216_consen 240 VEFIEEHKRPTLRKLRPE 257 (383)
T ss_dssp HHHHHHT-S-SEEE--GG
T ss_pred HHHHHHhchhHhhhCChh
Confidence 999999988777766654
No 125
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.13 E-value=2.6e-10 Score=83.11 Aligned_cols=86 Identities=20% Similarity=0.338 Sum_probs=74.4
Q ss_pred cCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccC
Q 021468 46 ESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD 124 (312)
Q Consensus 46 ~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~ 124 (312)
..++.++++|+++| +.|+.+.|.++++++++.+.+.++.+|+++ ++.++++++|.++ |+++++.+|+ ....+.
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~---~~~l~~~~~v~~v--Pt~~i~~~g~-~v~~~~ 84 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE---DQEIAEAAGIMGT--PTVQFFKDKE-LVKEIS 84 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC---CHHHHHHCCCeec--cEEEEEECCe-EEEEEe
Confidence 45566778899999 999999999999999999889999999988 5699999999988 9999998764 445678
Q ss_pred CCCCHHHHHHHHH
Q 021468 125 GELTLDKIKTFGE 137 (312)
Q Consensus 125 g~~~~~~i~~fi~ 137 (312)
|..+.++|.+|++
T Consensus 85 g~~~~~~~~~~l~ 97 (97)
T cd02949 85 GVKMKSEYREFIE 97 (97)
T ss_pred CCccHHHHHHhhC
Confidence 8899999988874
No 126
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.12 E-value=2.3e-09 Score=102.50 Aligned_cols=180 Identities=15% Similarity=0.110 Sum_probs=136.0
Q ss_pred EEEEEee-C-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEc-CCCCceeccCCCCC
Q 021468 52 QLLLFAV-S-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG-NDDAKKHILDGELT 128 (312)
Q Consensus 52 ~i~f~~~-~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~-~~~~~~~~~~g~~~ 128 (312)
.+.+|.+ . ..|..+...+++++ .+.++|.+...|... ...+.++||+... |++.+.+ ++....+.|.|-..
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~---~~~~~~~~~v~~~--P~~~i~~~~~~~~~i~f~g~P~ 442 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGE---EPESETLPKITKL--PTVALLDDDGNYTGLKFHGVPS 442 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEecccc---chhhHhhcCCCcC--CEEEEEeCCCcccceEEEecCc
Confidence 3445544 4 58999999999999 666789998888876 4588999999988 9999985 44445678899999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCccchhhhhcCCCcE-EEEEEcCCChhhhcchHHHHHHHHHhc
Q 021468 129 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLR 207 (312)
Q Consensus 129 ~~~i~~fi~~~l~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~i~~~~k~~-lV~f~~~~C~~C~~~~~~~~~la~~~~ 207 (312)
-.++..||...+.-.- .-..|+.+..+. +..-++++ +-.|.+++|+.|......+++++....
T Consensus 443 G~Ef~s~i~~i~~~~~---------------~~~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~ 506 (555)
T TIGR03143 443 GHELNSFILALYNAAG---------------PGQPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP 506 (555)
T ss_pred cHhHHHHHHHHHHhcC---------------CCCCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC
Confidence 9999999999876221 111243333333 44445665 556789999999999888988888754
Q ss_pred CCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeeccCcCHHHHHHHH
Q 021468 208 GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 208 ~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi 263 (312)
++..-.+|...... .+|+|.++|++++ +|.. .+.|..+.++|..||
T Consensus 507 ---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~-----~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 507 ---NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQ-----VYFGKKTIEEMLELI 554 (555)
T ss_pred ---CceEEEEECcccHHHHHhCCceecCEEEE--CCEE-----EEeeCCCHHHHHHhh
Confidence 47788888888876 6999999999887 3433 577977999998886
No 127
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.10 E-value=4.4e-10 Score=90.77 Aligned_cols=104 Identities=10% Similarity=0.133 Sum_probs=83.8
Q ss_pred CCCceEEeCC-CcccccccCCC---ccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCC
Q 021468 29 KLPLVTIFTR-ENAPSVFESPI---KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT 103 (312)
Q Consensus 29 ~~~~v~~lt~-~~~~~~~~~~~---~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~ 103 (312)
....+.+++. ++|...+.... .++|.||++| ++|+.+.|.|.+||.+|.. +.|+.||++. + .++..|+|.
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-vkF~kVd~d~---~-~l~~~f~v~ 134 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-VKFCKIRASA---T-GASDEFDTD 134 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-eEEEEEeccc---h-hhHHhCCCC
Confidence 3567889999 88888775433 6778899999 9999999999999999975 9999999987 4 789999999
Q ss_pred CCCCcEEEEEcCCCCceec------cCCCCCHHHHHHHHHHH
Q 021468 104 GEAPKVLAYTGNDDAKKHI------LDGELTLDKIKTFGEDF 139 (312)
Q Consensus 104 ~~~~P~~~~~~~~~~~~~~------~~g~~~~~~i~~fi~~~ 139 (312)
.. |++++|.+|...... .....+.+.|..|+.++
T Consensus 135 ~v--PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 135 AL--PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred CC--CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 88 999999988732111 12257888888887663
No 128
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.07 E-value=7.3e-10 Score=79.30 Aligned_cols=91 Identities=20% Similarity=0.280 Sum_probs=76.4
Q ss_pred cccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCC
Q 021468 40 NAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA 118 (312)
Q Consensus 40 ~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~ 118 (312)
+|...+....+.+++|+++| ..|..+.+.|.+++.. .+.+.|+.+|++. ++.+++.|++.++ |+++++..|.
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~---~~~~~~~~~v~~~--P~~~~~~~g~- 74 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE---NPELAEEYGVRSI--PTFLFFKNGK- 74 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC---ChhHHHhcCcccc--cEEEEEECCE-
Confidence 45555666678888999999 9999999999999999 6669999999998 5699999999988 9999998775
Q ss_pred ceeccCCCCCHHHHHHHHH
Q 021468 119 KKHILDGELTLDKIKTFGE 137 (312)
Q Consensus 119 ~~~~~~g~~~~~~i~~fi~ 137 (312)
....+.|..+.+.|.+|++
T Consensus 75 ~~~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 75 EVDRVVGADPKEELEEFLE 93 (93)
T ss_pred EEEEEecCCCHHHHHHHhC
Confidence 4456678888899988873
No 129
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.07 E-value=3.4e-09 Score=81.25 Aligned_cols=111 Identities=19% Similarity=0.252 Sum_probs=86.3
Q ss_pred CceEEeCCCcccc-cccCCCccEEEEEeeC------CchhhHHHHHHHHHHHcCCe-EEEEEEeCCCCccccchhhhhCC
Q 021468 31 PLVTIFTRENAPS-VFESPIKNQLLLFAVS------NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGI 102 (312)
Q Consensus 31 ~~v~~lt~~~~~~-~~~~~~~~~i~f~~~~------~~c~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~~l~~~~~v 102 (312)
+.+.+|+.+++-+ .-.. ..+=|+.+.+. .....+...++++|++|+++ +.|+++|.+.. ..+.+.||+
T Consensus 2 ~~~~~l~~~~~~~~~C~~-~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~---~~~~~~fgl 77 (130)
T cd02983 2 PEIIELTSEDVFEETCEE-KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ---LDLEEALNI 77 (130)
T ss_pred CceEEecCHHHHHhhccC-CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc---HHHHHHcCC
Confidence 4577888776533 2322 34445555543 23467899999999999999 99999999984 469999999
Q ss_pred CCCCCcEEEEEcCCCCceec-cCCCCCHHHHHHHHHHHhcCCCCC
Q 021468 103 TGEAPKVLAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGKLKP 146 (312)
Q Consensus 103 ~~~~~P~~~~~~~~~~~~~~-~~g~~~~~~i~~fi~~~l~~~~~~ 146 (312)
.+...|++++++.... +|. +.|..+.++|.+|+++++.|++..
T Consensus 78 ~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~ 121 (130)
T cd02983 78 GGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGPT 121 (130)
T ss_pred CccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCCccc
Confidence 8755699999988754 676 789999999999999999999844
No 130
>PTZ00051 thioredoxin; Provisional
Probab=99.07 E-value=4e-10 Score=82.26 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=72.0
Q ss_pred CCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCC
Q 021468 38 RENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND 116 (312)
Q Consensus 38 ~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~ 116 (312)
.+++..++..+..+++.||++| ++|+.+.+.|.+++.++.+ +.|+.+|++. ++.++++|+|.++ |+++++.+|
T Consensus 8 ~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~~---~~~~~~~~~v~~~--Pt~~~~~~g 81 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVDE---LSEVAEKENITSM--PTFKVFKNG 81 (98)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECcc---hHHHHHHCCCcee--eEEEEEeCC
Confidence 3467777778888899999999 9999999999999999877 8999999988 5699999999998 999999877
Q ss_pred CCceeccCCCCCHHHHH
Q 021468 117 DAKKHILDGELTLDKIK 133 (312)
Q Consensus 117 ~~~~~~~~g~~~~~~i~ 133 (312)
.. ...+.| ...+.|.
T Consensus 82 ~~-~~~~~G-~~~~~~~ 96 (98)
T PTZ00051 82 SV-VDTLLG-ANDEALK 96 (98)
T ss_pred eE-EEEEeC-CCHHHhh
Confidence 53 334455 3444443
No 131
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.05 E-value=4.7e-10 Score=77.72 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=57.6
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeeccC-cCHHHH
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVD-RTVVAL 259 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~-~~~~~l 259 (312)
.|.||++||++|+.+.+.+++++.++.. .+.+..+| +.....++++.++|++++ +|+. .+.|. .+.+.|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~-~~~~a~~~~v~~vPti~i--~G~~-----~~~G~~~~~~~l 71 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT-DMNEILEAGVTATPGVAV--DGEL-----VIMGKIPSKEEI 71 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC-CHHHHHHcCCCcCCEEEE--CCEE-----EEEeccCCHHHH
Confidence 3789999999999999999999999876 58888877 222336899999999999 6654 36663 455777
Q ss_pred HHHH
Q 021468 260 YKFL 263 (312)
Q Consensus 260 ~~fi 263 (312)
.+++
T Consensus 72 ~~~l 75 (76)
T TIGR00412 72 KEIL 75 (76)
T ss_pred HHHh
Confidence 7776
No 132
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.05 E-value=6.8e-10 Score=105.78 Aligned_cols=103 Identities=26% Similarity=0.443 Sum_probs=78.6
Q ss_pred eEEEe-Cccchhhhh---cCCCcEEEEEEcCCChhhhcchHHH---HHHHHHhcCCCcEEEEEEeCCCccc------ccC
Q 021468 161 VKIVV-GNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH------HRA 227 (312)
Q Consensus 161 v~~l~-~~~f~~~i~---~~~k~~lV~f~~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~------~~~ 227 (312)
.+.++ .+++++.+. .++|+++|+||++||.+|+.+.+.+ .++.+.+++ +.++++|++.+.. ++|
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~---~~~v~vDvt~~~~~~~~l~~~~ 530 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD---TVLLQADVTANNAEDVALLKHY 530 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC---CEEEEEECCCCChhhHHHHHHc
Confidence 34443 356666553 3468999999999999999998875 567776653 7889999987532 579
Q ss_pred CCCCCceEEEEe-CCCcccCceeeccCcCHHHHHHHHHhcC
Q 021468 228 KSDGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFLKKNA 267 (312)
Q Consensus 228 ~i~~~Pt~~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 267 (312)
++.++|++++|+ +|+.+ +..++.|..+.+++.+++++..
T Consensus 531 ~v~g~Pt~~~~~~~G~~i-~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 531 NVLGLPTILFFDAQGQEI-PDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CCCCCCEEEEECCCCCCc-ccccccCCCCHHHHHHHHHHhc
Confidence 999999999996 56653 2347889899999999998753
No 133
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.01 E-value=1.1e-09 Score=83.18 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=77.2
Q ss_pred CceEEeCCCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc--------cccchhhhhC
Q 021468 31 PLVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------VGKPVSEYFG 101 (312)
Q Consensus 31 ~~v~~lt~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~--------~~~~l~~~~~ 101 (312)
..+..++.+.+.+.+..+...+|+|+++| ++|+.+.|.|.+++++ .++.|.+||.+... ....+.+.|+
T Consensus 6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 34556777888888888888899999999 9999999999999998 33667777877421 0124556665
Q ss_pred C----CCCCCcEEEEEcCCCCceeccCC-CCCHHHHHHHHH
Q 021468 102 I----TGEAPKVLAYTGNDDAKKHILDG-ELTLDKIKTFGE 137 (312)
Q Consensus 102 v----~~~~~P~~~~~~~~~~~~~~~~g-~~~~~~i~~fi~ 137 (312)
+ .+. |+++++.+|+.... ..| ..+.++|.+|+.
T Consensus 84 i~~~i~~~--PT~v~~k~Gk~v~~-~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 84 IPTSFMGT--PTFVHITDGKQVSV-RCGSSTTAQELQDIAA 121 (122)
T ss_pred CcccCCCC--CEEEEEeCCeEEEE-EeCCCCCHHHHHHHhh
Confidence 4 446 99999999975443 345 567999999874
No 134
>PHA02125 thioredoxin-like protein
Probab=98.99 E-value=1.2e-09 Score=75.52 Aligned_cols=67 Identities=16% Similarity=0.351 Sum_probs=50.8
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeecc-CcCHH
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVV 257 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g-~~~~~ 257 (312)
+++||++||++|+.+.|.|..++ +.++.+|.+.+.. .+|++.++||++ .|+.+. .+.| ..+..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~---~~~G~~~~~~ 67 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLD---RFTGVPRNVA 67 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEE---EEeCCCCcHH
Confidence 78999999999999999987652 4678888877665 789999999987 455443 6667 34445
Q ss_pred HHHH
Q 021468 258 ALYK 261 (312)
Q Consensus 258 ~l~~ 261 (312)
+|.+
T Consensus 68 ~l~~ 71 (75)
T PHA02125 68 ELKE 71 (75)
T ss_pred HHHH
Confidence 5544
No 135
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.98 E-value=2.5e-09 Score=99.40 Aligned_cols=89 Identities=15% Similarity=0.252 Sum_probs=68.9
Q ss_pred hhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeC----------------------------CCccc
Q 021468 173 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG----------------------------TTNEH 224 (312)
Q Consensus 173 i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~----------------------------~~~~~ 224 (312)
.+..++++||.||++||++|+.++|.|.+++.+++.. ++.++.|.. +.+..
T Consensus 52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~ 130 (521)
T PRK14018 52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGT 130 (521)
T ss_pred eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHH
Confidence 4457899999999999999999999999999998742 355544432 11111
Q ss_pred --ccCCCCCCceEEEE-eCCCcccCceeeccCcCHHHHHHHHHh
Q 021468 225 --HRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKK 265 (312)
Q Consensus 225 --~~~~i~~~Pt~~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~ 265 (312)
..|+|.++|+++++ ++|+.+. .+.|..+.+.|.++|+.
T Consensus 131 lak~fgV~giPTt~IIDkdGkIV~---~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 131 LAQSLNISVYPSWAIIGKDGDVQR---IVKGSISEAQALALIRN 171 (521)
T ss_pred HHHHcCCCCcCeEEEEcCCCeEEE---EEeCCCCHHHHHHHHHH
Confidence 46899999999777 5676654 78899999999999983
No 136
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.97 E-value=2.5e-09 Score=89.67 Aligned_cols=119 Identities=6% Similarity=0.001 Sum_probs=90.8
Q ss_pred ccccCCCCHHHHHHHHHhcC--CCceEEeCCCcccccccCCCccEEE-EEeeC-CchhhHHHHHHHHHHHcCCeEEEEEE
Q 021468 10 SYFDGKFDKSTIADFVFSNK--LPLVTIFTRENAPSVFESPIKNQLL-LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYV 85 (312)
Q Consensus 10 ~~y~g~~~~~~l~~fi~~~~--~~~v~~lt~~~~~~~~~~~~~~~i~-f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~v 85 (312)
..|.|..+.+.+.+||.... ...-..+++++.+.+.....+..|. |+++| ++|+.+.+.+.+++.+. +.+.+..+
T Consensus 92 ~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~v 170 (215)
T TIGR02187 92 IRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMI 170 (215)
T ss_pred EEEeecCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEE
Confidence 46889888888888876542 2233455555544444434455444 89999 99999999999999985 56999999
Q ss_pred eCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHH
Q 021468 86 QMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGED 138 (312)
Q Consensus 86 d~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~ 138 (312)
|.+. ++.++++|||.+. |+++++.++. .+.|....++|.+|+.+
T Consensus 171 D~~~---~~~~~~~~~V~~v--Ptl~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 171 EANE---NPDLAEKYGVMSV--PKIVINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred eCCC---CHHHHHHhCCccC--CEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence 9988 6799999999999 9998876543 26788999999999875
No 137
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.96 E-value=5.3e-09 Score=73.52 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=67.6
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHH
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD 130 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~ 130 (312)
+.+|+++| ++|+.+.|.+++++..+++.+.+..||.+. ++.+++.+|+.+. |++++ +|. ..+.|..+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~v~~v--Pt~~~--~g~---~~~~G~~~~~ 72 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME---NPQKAMEYGIMAV--PAIVI--NGD---VEFIGAPTKE 72 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc---CHHHHHHcCCccC--CEEEE--CCE---EEEecCCCHH
Confidence 56799999 999999999999999998889999999987 5699999999999 99865 332 3567888999
Q ss_pred HHHHHHHHH
Q 021468 131 KIKTFGEDF 139 (312)
Q Consensus 131 ~i~~fi~~~ 139 (312)
.|.+++.+.
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 999998875
No 138
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.96 E-value=2.8e-09 Score=81.51 Aligned_cols=100 Identities=14% Similarity=0.181 Sum_probs=80.0
Q ss_pred cccccCC-CccEEEEEeeC-CchhhHHHHHH---HHHHHcCCeEEEEEEeCCCCc----------cccchhhhhCCCCCC
Q 021468 42 PSVFESP-IKNQLLLFAVS-NDSEKLLPVFE---EAAKSFKGKLIFVYVQMDNED----------VGKPVSEYFGITGEA 106 (312)
Q Consensus 42 ~~~~~~~-~~~~i~f~~~~-~~c~~~~~~~~---~la~~~~~~i~f~~vd~~~~~----------~~~~l~~~~~v~~~~ 106 (312)
......+ ++.+|.|+++| ++|+.+.+.+. .+...+.+.+.++.+|.+... -...++..|+|.++
T Consensus 7 ~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~- 85 (125)
T cd02951 7 AEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFT- 85 (125)
T ss_pred HHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccc-
Confidence 3345566 78899999999 99999999885 677777777889999987631 02578999999988
Q ss_pred CcEEEEEcCC-CCceeccCCCCCHHHHHHHHHHHhcCC
Q 021468 107 PKVLAYTGND-DAKKHILDGELTLDKIKTFGEDFLEGK 143 (312)
Q Consensus 107 ~P~~~~~~~~-~~~~~~~~g~~~~~~i~~fi~~~l~~~ 143 (312)
|++++++.+ +.....+.|..+.+.+.++++.++++.
T Consensus 86 -Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 86 -PTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred -cEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhh
Confidence 999999886 444556789899999999999987754
No 139
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.95 E-value=5.7e-09 Score=82.18 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=61.5
Q ss_pred CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCc----------cc---ccC---CCCCCceEEEEeC
Q 021468 177 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----------EH---HRA---KSDGFPTILFFPA 240 (312)
Q Consensus 177 ~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~----------~~---~~~---~i~~~Pt~~~~~~ 240 (312)
.+..+|+||++||++|+..+|.+.++++++.- .+..+.+|.... .. ..+ ++.++|+.+++..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~--~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGL--PVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCC--cEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 45569999999999999999999999998742 344444443210 11 124 6789999999965
Q ss_pred -CCcccCceeeccCcCHHHHHHHHHhc
Q 021468 241 -GNKSFDPINVDVDRTVVALYKFLKKN 266 (312)
Q Consensus 241 -g~~~~~~~~y~g~~~~~~l~~fi~~~ 266 (312)
|..+ ...+.|..+.+.+.+.|.+.
T Consensus 128 ~G~~i--~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKA--YPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCEE--EEEeecccCHHHHHHHHHHh
Confidence 4432 12567889999998888765
No 140
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.95 E-value=3.8e-09 Score=78.60 Aligned_cols=102 Identities=23% Similarity=0.303 Sum_probs=80.2
Q ss_pred eEEeCCCcccccccCCCccEEEEEe----eC-CchhhHHHHHHHHHHHcC-CeEEEEEEeCCCCccccchhhhhCCCCCC
Q 021468 33 VTIFTRENAPSVFESPIKNQLLLFA----VS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNEDVGKPVSEYFGITGEA 106 (312)
Q Consensus 33 v~~lt~~~~~~~~~~~~~~~i~f~~----~~-~~c~~~~~~~~~la~~~~-~~i~f~~vd~~~~~~~~~l~~~~~v~~~~ 106 (312)
|.++|.++...++..+ .++.+|+ .. ...+.+...+.++|++|+ |++.|+.+|.++.. ..++.||+....
T Consensus 1 v~~~~~en~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~---~~l~~fgl~~~~ 75 (111)
T cd03073 1 VGHRTKDNRAQFTKKP--LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFS---HELEEFGLDFSG 75 (111)
T ss_pred CCeeccchHHHhccCC--eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHH---HHHHHcCCCccc
Confidence 3467888877776543 3444443 34 667889999999999999 79999999999843 688999999744
Q ss_pred --CcEEEEEcCCCCceeccCCCC-CHHHHHHHHHHHh
Q 021468 107 --PKVLAYTGNDDAKKHILDGEL-TLDKIKTFGEDFL 140 (312)
Q Consensus 107 --~P~~~~~~~~~~~~~~~~g~~-~~~~i~~fi~~~l 140 (312)
.|+++++..+. .+|.+.+.. +.++|.+|+++++
T Consensus 76 ~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 76 GEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHhC
Confidence 69999988654 677777888 9999999999863
No 141
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.94 E-value=6.9e-10 Score=83.10 Aligned_cols=84 Identities=20% Similarity=0.381 Sum_probs=58.7
Q ss_pred cCCCcEEEEEEcCCChhhhcchHHHHHHHH---HhcCCCcEEEEEEeCCCcc---------------------c-ccCCC
Q 021468 175 DESKDVLLEIYAPWCGHCQAFEPTYNKLAK---HLRGVDSIVIAKMDGTTNE---------------------H-HRAKS 229 (312)
Q Consensus 175 ~~~k~~lV~f~~~~C~~C~~~~~~~~~la~---~~~~~~~v~~~~vd~~~~~---------------------~-~~~~i 229 (312)
.++++++|+|+++||++|+.+.+.+..... .++. ++.++.+++.... . ..++|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 467899999999999999999998886544 3333 4667777766532 1 46899
Q ss_pred CCCceEEEEe-CCCcccCceeeccCcCHHHHHHHH
Q 021468 230 DGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 230 ~~~Pt~~~~~-~g~~~~~~~~y~g~~~~~~l~~fi 263 (312)
.++|+++++. +|+.+. .+.|..+.++|.++|
T Consensus 81 ~gtPt~~~~d~~G~~v~---~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVY---RIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEE---EEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEE---EecCCCCHHHHHhhC
Confidence 9999999996 566543 678999999998875
No 142
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=4.2e-09 Score=86.43 Aligned_cols=100 Identities=11% Similarity=0.132 Sum_probs=80.7
Q ss_pred EeCCCcccccccC--CCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEE
Q 021468 35 IFTRENAPSVFES--PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA 111 (312)
Q Consensus 35 ~lt~~~~~~~~~~--~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~ 111 (312)
.-++..|...+.. .+..+|-|++.| ++|+.++|+|+.+|.+|.+ ..|.+||.++.. ..+..+||... |||+
T Consensus 6 v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd~c~---~taa~~gV~am--PTFi 79 (288)
T KOG0908|consen 6 VNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVDECR---GTAATNGVNAM--PTFI 79 (288)
T ss_pred ecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHHHhh---chhhhcCcccC--ceEE
Confidence 3344566655443 235566799999 9999999999999999988 899999999954 89999999998 9999
Q ss_pred EEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021468 112 YTGNDDAKKHILDGELTLDKIKTFGEDFLEG 142 (312)
Q Consensus 112 ~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~~ 142 (312)
+|+++. +...-...+...|+.-+.++++.
T Consensus 80 ff~ng~--kid~~qGAd~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 80 FFRNGV--KIDQIQGADASGLEEKVAKYAST 108 (288)
T ss_pred EEecCe--EeeeecCCCHHHHHHHHHHHhcc
Confidence 999886 33433448999999999998763
No 143
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.92 E-value=4.2e-09 Score=90.98 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=67.2
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC---------ccc--ccCCCCCCceEEEEeC-CCc
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT---------NEH--HRAKSDGFPTILFFPA-GNK 243 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~---------~~~--~~~~i~~~Pt~~~~~~-g~~ 243 (312)
.++.+||+||++||++|+.+.|.+.+++.++.- .+..+.+|... +.. .+++|.++|+++++.. |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~--~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGI--EVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCc--EEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 368899999999999999999999999999842 34444444322 111 5889999999999986 554
Q ss_pred ccCceeeccCcCHHHHHHHHHhcCC
Q 021468 244 SFDPINVDVDRTVVALYKFLKKNAS 268 (312)
Q Consensus 244 ~~~~~~y~g~~~~~~l~~fi~~~~~ 268 (312)
+ . ....|..+.+.|.+.|...+.
T Consensus 243 v-~-~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 F-T-PIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred E-E-EEEeCCCCHHHHHHHHHHHhc
Confidence 3 1 234578899999999987754
No 144
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.89 E-value=1.6e-08 Score=76.75 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=84.7
Q ss_pred EeCccchhhhhcCCCcEEEEEEc--CCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEe
Q 021468 164 VVGNNFDEIVLDESKDVLLEIYA--PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFP 239 (312)
Q Consensus 164 l~~~~f~~~i~~~~k~~lV~f~~--~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~ 239 (312)
++..+++.++ ......+|+|-. ..++.+....=++.+++.+|.+. .+.++++|++.+.. .+|+|.++||+++|+
T Consensus 22 ~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~-~v~~akVDiD~~~~LA~~fgV~siPTLl~Fk 99 (132)
T PRK11509 22 VSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSEAIGDRFGVFRFPATLVFT 99 (132)
T ss_pred cccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC-ceEEEEEECCCCHHHHHHcCCccCCEEEEEE
Confidence 5567788876 445566666665 33778888888999999999742 59999999999987 799999999999999
Q ss_pred CCCcccCceeeccCcCHHHHHHHHHhcCCCC
Q 021468 240 AGNKSFDPINVDVDRTVVALYKFLKKNASIP 270 (312)
Q Consensus 240 ~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~ 270 (312)
+|+.++ .+.|..+.+.+.+||.+++..+
T Consensus 100 dGk~v~---~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 100 GGNYRG---VLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred CCEEEE---EEeCcCCHHHHHHHHHHHhcCc
Confidence 999886 7889899999999999997644
No 145
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.89 E-value=1.4e-08 Score=76.97 Aligned_cols=70 Identities=23% Similarity=0.385 Sum_probs=54.4
Q ss_pred hhcCCCcEEEEEEcCCChhhhcchHH-H--HHHHHHhcCCCcEEEEEEeCCCccc--c--------cCCCCCCceEEEE-
Q 021468 173 VLDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH--H--------RAKSDGFPTILFF- 238 (312)
Q Consensus 173 i~~~~k~~lV~f~~~~C~~C~~~~~~-~--~~la~~~~~~~~v~~~~vd~~~~~~--~--------~~~i~~~Pt~~~~- 238 (312)
....+|+++|+|+++||+.|+.|... | .+++..+.. ++.++.+|.+.... . .+++.++|+++++
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~ 88 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLT 88 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEEC
Confidence 34678999999999999999999764 3 356666655 58999999987654 1 2688999999999
Q ss_pred eCCCcc
Q 021468 239 PAGNKS 244 (312)
Q Consensus 239 ~~g~~~ 244 (312)
++|+.+
T Consensus 89 ~~G~~~ 94 (124)
T cd02955 89 PDLKPF 94 (124)
T ss_pred CCCCEE
Confidence 456655
No 146
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.88 E-value=1e-08 Score=83.90 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=80.1
Q ss_pred cCCCceEEeCCCccccccc-CC--CccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCC
Q 021468 28 NKLPLVTIFTRENAPSVFE-SP--IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT 103 (312)
Q Consensus 28 ~~~~~v~~lt~~~~~~~~~-~~--~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~ 103 (312)
.....+.+++.++|...+. .+ ..++|.||++| ++|+.+.|.|.+||.+|.. +.|+.||++. .+..|+|.
T Consensus 79 ~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-vkFvkI~ad~------~~~~~~i~ 151 (192)
T cd02988 79 SKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-TKFVKIISTQ------CIPNYPDK 151 (192)
T ss_pred CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-CEEEEEEhHH------hHhhCCCC
Confidence 4467889999999886543 22 35677899999 9999999999999999976 9999999975 25889999
Q ss_pred CCCCcEEEEEcCCCCcee-----ccCC-CCCHHHHHHHHHH
Q 021468 104 GEAPKVLAYTGNDDAKKH-----ILDG-ELTLDKIKTFGED 138 (312)
Q Consensus 104 ~~~~P~~~~~~~~~~~~~-----~~~g-~~~~~~i~~fi~~ 138 (312)
.. |++++|.+|..... .+.| ..+.+.|..++.+
T Consensus 152 ~l--PTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 152 NL--PTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CC--CEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 88 99999998873211 1223 4788888888765
No 147
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.86 E-value=1.9e-08 Score=76.23 Aligned_cols=105 Identities=9% Similarity=0.138 Sum_probs=85.6
Q ss_pred ceEEeCCCcccccccCCCccEEEEEeeC----CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCccccchhhhhCCCCCC
Q 021468 32 LVTIFTRENAPSVFESPIKNQLLLFAVS----NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEA 106 (312)
Q Consensus 32 ~v~~lt~~~~~~~~~~~~~~~i~f~~~~----~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~~v~~~~ 106 (312)
....++..+++......... ++|+..+ .++....=++.+++++|.+ ++.|++||++. ++.++.+|||.+.
T Consensus 18 g~~~~~~~~~~~~~~~~~~~-vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~---~~~LA~~fgV~si- 92 (132)
T PRK11509 18 GWTPVSESRLDDWLTQAPDG-VVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ---SEAIGDRFGVFRF- 92 (132)
T ss_pred CCCccccccHHHHHhCCCcE-EEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC---CHHHHHHcCCccC-
Confidence 45566668888888776554 4454444 7788889999999999984 59999999999 6799999999999
Q ss_pred CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCC
Q 021468 107 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGK 143 (312)
Q Consensus 107 ~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~~~ 143 (312)
|++++|++|+. .-...|.++.+.+.++|.+++...
T Consensus 93 -PTLl~FkdGk~-v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 93 -PATLVFTGGNY-RGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred -CEEEEEECCEE-EEEEeCcCCHHHHHHHHHHHhcCc
Confidence 99999999973 335578899999999999998843
No 148
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.84 E-value=3.5e-08 Score=79.80 Aligned_cols=103 Identities=18% Similarity=0.285 Sum_probs=76.2
Q ss_pred CeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc----------------
Q 021468 160 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---------------- 223 (312)
Q Consensus 160 ~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~---------------- 223 (312)
.+..++++.+.-.. -.+++++|+||++||+.|+...+.+.++.+++.+. ++.++.++++...
T Consensus 45 ~~~~~~g~~~~l~~-~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~ 122 (173)
T PRK03147 45 VLTDLEGKKIELKD-LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPV 122 (173)
T ss_pred EeecCCCCEEeHHH-cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceE
Confidence 44455665554322 24688999999999999999999999999999864 4777777765321
Q ss_pred ------c--ccCCCCCCceEEEEeCCCcccCceeeccCcCHHHHHHHHHhc
Q 021468 224 ------H--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 266 (312)
Q Consensus 224 ------~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~ 266 (312)
. ..|++..+|+++++..+..+ ...+.|..+.+++.+++.+.
T Consensus 123 ~~d~~~~~~~~~~v~~~P~~~lid~~g~i--~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 123 AIDKGRQVIDAYGVGPLPTTFLIDKDGKV--VKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred EECCcchHHHHcCCCCcCeEEEECCCCcE--EEEEeCCCCHHHHHHHHHHh
Confidence 1 57899999999999644432 12577888999999998754
No 149
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.82 E-value=9.9e-09 Score=69.23 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=47.3
Q ss_pred EEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEE
Q 021468 180 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 237 (312)
Q Consensus 180 ~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~ 237 (312)
.+++|+++||++|+.+.+.+++++.... ++.+..+|.+.+.. .++++.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 4788999999999999999999987643 48999999887765 7899999999866
No 150
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.82 E-value=1.6e-08 Score=77.97 Aligned_cols=68 Identities=28% Similarity=0.522 Sum_probs=52.6
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCC-CcEEEEEEeCCCcc------------------------c--ccCC
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE------------------------H--HRAK 228 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~------------------------~--~~~~ 228 (312)
.+++++|+||++||++|+.+.|.+.++..++... .++.++.++.+... . ..|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4689999999999999999999999999988753 24656656655331 1 4689
Q ss_pred CCCCceEEEEeCCCc
Q 021468 229 SDGFPTILFFPAGNK 243 (312)
Q Consensus 229 i~~~Pt~~~~~~g~~ 243 (312)
+.++|+++++..+.+
T Consensus 97 v~~~P~~~lid~~G~ 111 (131)
T cd03009 97 IEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCEEEEECCCCC
Confidence 999999999964433
No 151
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.81 E-value=1.7e-08 Score=73.18 Aligned_cols=65 Identities=25% Similarity=0.503 Sum_probs=49.8
Q ss_pred CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc---------------------------ccCCC
Q 021468 177 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------------------------HRAKS 229 (312)
Q Consensus 177 ~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------------------------~~~~i 229 (312)
+|+++|+||++||++|+...|.+.++.++++...++.++.|+.+.... ..|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 578999999999999999999999999999943478888888776311 12477
Q ss_pred CCCceEEEEeCC
Q 021468 230 DGFPTILFFPAG 241 (312)
Q Consensus 230 ~~~Pt~~~~~~g 241 (312)
.++|+++++...
T Consensus 81 ~~iP~~~lld~~ 92 (95)
T PF13905_consen 81 NGIPTLVLLDPD 92 (95)
T ss_dssp TSSSEEEEEETT
T ss_pred CcCCEEEEECCC
Confidence 888888888654
No 152
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.81 E-value=1.7e-08 Score=77.96 Aligned_cols=68 Identities=26% Similarity=0.499 Sum_probs=52.8
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCC-CcEEEEEEeCCCcc-------------------------c--ccC
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE-------------------------H--HRA 227 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~-------------------------~--~~~ 227 (312)
.++.++|.||++||++|+..+|.+.++++.++.. .++.+..++.+... . ..|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4689999999999999999999999999988764 24666656555421 1 348
Q ss_pred CCCCCceEEEEeCCCc
Q 021468 228 KSDGFPTILFFPAGNK 243 (312)
Q Consensus 228 ~i~~~Pt~~~~~~g~~ 243 (312)
++.++|+++++..+.+
T Consensus 96 ~v~~iPt~~lid~~G~ 111 (132)
T cd02964 96 KVEGIPTLVVLKPDGD 111 (132)
T ss_pred CCCCCCEEEEECCCCC
Confidence 9999999999965433
No 153
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.81 E-value=1.3e-08 Score=76.31 Aligned_cols=90 Identities=21% Similarity=0.234 Sum_probs=67.6
Q ss_pred ccccccC--CCccEEEEEe-------eC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc----cccchhhhhCCC-CC
Q 021468 41 APSVFES--PIKNQLLLFA-------VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED----VGKPVSEYFGIT-GE 105 (312)
Q Consensus 41 ~~~~~~~--~~~~~i~f~~-------~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~----~~~~l~~~~~v~-~~ 105 (312)
|.+.+.. +++.+|.||+ +| ++|+.+.|.+++++.++.+.+.|+.||.++.. .+..+...++|. +.
T Consensus 12 f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~i 91 (119)
T cd02952 12 FLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGV 91 (119)
T ss_pred HHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCC
Confidence 3444443 5678889999 99 99999999999999999977999999997621 145888999998 77
Q ss_pred CCcEEEEEcCCCCceeccCCC--CCHHHHHHHH
Q 021468 106 APKVLAYTGNDDAKKHILDGE--LTLDKIKTFG 136 (312)
Q Consensus 106 ~~P~~~~~~~~~~~~~~~~g~--~~~~~i~~fi 136 (312)
|+++++..++ ...+. .+.+.+..|+
T Consensus 92 --PT~~~~~~~~----~l~~~~c~~~~~~~~~~ 118 (119)
T cd02952 92 --PTLLRWKTPQ----RLVEDECLQADLVEMFF 118 (119)
T ss_pred --CEEEEEcCCc----eecchhhcCHHHHHHhh
Confidence 9999996654 22222 4555665554
No 154
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.79 E-value=2.6e-08 Score=81.53 Aligned_cols=86 Identities=21% Similarity=0.318 Sum_probs=64.0
Q ss_pred cCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-------------------------ccCCC
Q 021468 175 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------------------------HRAKS 229 (312)
Q Consensus 175 ~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------------------------~~~~i 229 (312)
..+++++|.||++||++|+..+|.+.+++.. ++.++.++.+.... ..|++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 3578999999999999999999999988652 35555565433110 24688
Q ss_pred CCCceEEEEe-CCCcccCceeeccCcCHHHHHHHHHhcCC
Q 021468 230 DGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFLKKNAS 268 (312)
Q Consensus 230 ~~~Pt~~~~~-~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 268 (312)
.++|+.+++. +|+... .+.|..+.+.+.++|+..+.
T Consensus 141 ~~~P~t~vid~~G~i~~---~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 141 YGAPETFLIDGNGIIRY---RHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CcCCeEEEECCCceEEE---EEecCCCHHHHHHHHHHHHH
Confidence 9999877774 665443 67788899999888887753
No 155
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.77 E-value=2.1e-08 Score=78.14 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=51.9
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCC------CcEEEEEEeCCCccc-------------------------
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV------DSIVIAKMDGTTNEH------------------------- 224 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~------~~v~~~~vd~~~~~~------------------------- 224 (312)
.+++++|+|||+||++|+.++|.+.++.++++++ .++.++.|+.+....
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4789999999999999999999999998877642 247777777664211
Q ss_pred --ccCCCCCCceEEEEeCCC
Q 021468 225 --HRAKSDGFPTILFFPAGN 242 (312)
Q Consensus 225 --~~~~i~~~Pt~~~~~~g~ 242 (312)
..|++.++|+.+++....
T Consensus 104 l~~~y~v~~iPt~vlId~~G 123 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDG 123 (146)
T ss_pred HHHHcCCCCCCEEEEECCCC
Confidence 245788999999996443
No 156
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.74 E-value=4.2e-08 Score=84.03 Aligned_cols=111 Identities=21% Similarity=0.313 Sum_probs=82.0
Q ss_pred CCeEEEeC-ccchhhhhcCC--CcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCCCce
Q 021468 159 GDVKIVVG-NNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPT 234 (312)
Q Consensus 159 ~~v~~l~~-~~f~~~i~~~~--k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~i~~~Pt 234 (312)
+.|..++. +.|.+.+.... ..+||+||.+.++.|..|...|..||.+|.. ++|++|..+.... ..|.+..+|+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~---vKFvkI~a~~~~~~~~f~~~~LPt 201 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE---VKFVKIRASKCPASENFPDKNLPT 201 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT---SEEEEEEECGCCTTTTS-TTC-SE
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEEehhccCcccCCcccCCCE
Confidence 67888865 78888775443 4589999999999999999999999999987 8999998876544 7899999999
Q ss_pred EEEEeCCCcccCceeec---c-CcCHHHHHHHHHhcCCCCcc
Q 021468 235 ILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKNASIPFK 272 (312)
Q Consensus 235 ~~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~~~~~~~ 272 (312)
|++|++|..+.+.+.+. | .++...|..||.++.-.+-+
T Consensus 202 llvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~~k 243 (265)
T PF02114_consen 202 LLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLPEK 243 (265)
T ss_dssp EEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS--
T ss_pred EEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCCCc
Confidence 99999998776555543 3 67789999999999765443
No 157
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.74 E-value=1.8e-08 Score=81.64 Aligned_cols=86 Identities=23% Similarity=0.310 Sum_probs=63.4
Q ss_pred cCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC-----------------------ccc--ccCCC
Q 021468 175 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------------------NEH--HRAKS 229 (312)
Q Consensus 175 ~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-----------------------~~~--~~~~i 229 (312)
..+++++|+||++||++|+.+.|.+.+++.. ++.+..++.+. ... ..|++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 3578999999999999999999999888753 24444444321 111 45788
Q ss_pred CCCceEEEE-eCCCcccCceeeccCcCHHHHHHHHHhcCC
Q 021468 230 DGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS 268 (312)
Q Consensus 230 ~~~Pt~~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 268 (312)
.++|+.+++ ++|+.+. .+.|..+.+.+.+++++.+.
T Consensus 136 ~~~P~~~~id~~G~i~~---~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 136 YGAPETFLVDGNGVILY---RHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eeCCeEEEEcCCceEEE---EEeccCCHHHHHHHHHHHhh
Confidence 899977777 5665543 56788999999999998763
No 158
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.72 E-value=8.1e-09 Score=84.12 Aligned_cols=102 Identities=23% Similarity=0.381 Sum_probs=90.0
Q ss_pred CCeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEE
Q 021468 159 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL 236 (312)
Q Consensus 159 ~~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~ 236 (312)
+.++.++.+++.+.+ ...++++|++|||+.|+...+.|+..|.--.+- .+.++.+|++.++. =+|-++..|+|+
T Consensus 24 s~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL-~v~va~VDvt~npgLsGRF~vtaLptIY 99 (248)
T KOG0913|consen 24 SKLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLDL-GVKVAKVDVTTNPGLSGRFLVTALPTIY 99 (248)
T ss_pred ceeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCCC-ceeEEEEEEEeccccceeeEEEecceEE
Confidence 478889999999976 467999999999999999999999998876653 69999999999988 589999999999
Q ss_pred EEeCCCcccCceeeccCcCHHHHHHHHHhcCC
Q 021468 237 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 268 (312)
Q Consensus 237 ~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 268 (312)
-.++|.-- +|.|+++.++++.|+...--
T Consensus 100 HvkDGeFr----rysgaRdk~dfisf~~~r~w 127 (248)
T KOG0913|consen 100 HVKDGEFR----RYSGARDKNDFISFEEHREW 127 (248)
T ss_pred Eeeccccc----cccCcccchhHHHHHHhhhh
Confidence 99999765 89999999999999987643
No 159
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.71 E-value=4e-08 Score=75.26 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=55.2
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCC-----------------------Cccc--ccCCCC
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-----------------------TNEH--HRAKSD 230 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-----------------------~~~~--~~~~i~ 230 (312)
.+++++|+||++||++|+.+.|.+.++++.+. +.++.++.+ .... ..|++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 47899999999999999999999999987752 445545432 1111 468999
Q ss_pred CCceEEEE-eCCCcccCceeeccCcCHHHH
Q 021468 231 GFPTILFF-PAGNKSFDPINVDVDRTVVAL 259 (312)
Q Consensus 231 ~~Pt~~~~-~~g~~~~~~~~y~g~~~~~~l 259 (312)
++|+.+++ ++|+.+. .+.|..+.+.|
T Consensus 100 ~~P~~~~ld~~G~v~~---~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGIIRY---KHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceEEE---EEeccCChHhc
Confidence 99977766 5665543 67787775543
No 160
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.71 E-value=5.6e-08 Score=69.31 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=58.8
Q ss_pred CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeeccCc
Q 021468 177 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDR 254 (312)
Q Consensus 177 ~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~ 254 (312)
+...+..|+++||++|....+.+.+++..+. ++.+..+|.+.... .+|+|.++|++++ +|+. .+.|..
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~-----~~~G~~ 81 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL-----FGFGRM 81 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE-----EEeCCC
Confidence 3446889999999999999999999998764 48899999888765 7999999999975 6655 445755
Q ss_pred CHHHHH
Q 021468 255 TVVALY 260 (312)
Q Consensus 255 ~~~~l~ 260 (312)
+.+++.
T Consensus 82 ~~~e~~ 87 (89)
T cd03026 82 TLEEIL 87 (89)
T ss_pred CHHHHh
Confidence 655543
No 161
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.71 E-value=5.5e-08 Score=98.93 Aligned_cols=89 Identities=15% Similarity=0.276 Sum_probs=71.4
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeC---CC------------------------ccc--cc
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG---TT------------------------NEH--HR 226 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~---~~------------------------~~~--~~ 226 (312)
.++++||.||++||++|+...|.|.++.+++++. .+.++.+.+ +. ... ..
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 4799999999999999999999999999999864 466666632 11 001 46
Q ss_pred CCCCCCceEEEE-eCCCcccCceeeccCcCHHHHHHHHHhcCC
Q 021468 227 AKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS 268 (312)
Q Consensus 227 ~~i~~~Pt~~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 268 (312)
|++.++|+++++ ++|+.+. ++.|....+.|.++|...+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~---~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIA---QLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEE---EEecccCHHHHHHHHHHHHH
Confidence 799999999999 5777654 67898888999999998865
No 162
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.4e-08 Score=80.29 Aligned_cols=87 Identities=20% Similarity=0.321 Sum_probs=71.8
Q ss_pred CCCeEEE-eCccchhhhh-cCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCC---
Q 021468 158 DGDVKIV-VGNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD--- 230 (312)
Q Consensus 158 ~~~v~~l-~~~~f~~~i~-~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~--- 230 (312)
...++.+ +.+.+++.+. +....|+|.|++.|.+.|..+.|.|.+++.+|... ++.||++|+...+. .+|+|.
T Consensus 123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~-~lkFGkvDiGrfpd~a~kfris~s~ 201 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN-LLKFGKVDIGRFPDVAAKFRISLSP 201 (265)
T ss_pred chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC-CCcccceeeccCcChHHheeeccCc
Confidence 4567777 5566666553 33466999999999999999999999999999874 79999999999887 677664
Q ss_pred ---CCceEEEEeCCCccc
Q 021468 231 ---GFPTILFFPAGNKSF 245 (312)
Q Consensus 231 ---~~Pt~~~~~~g~~~~ 245 (312)
.+||+++|.+|+++.
T Consensus 202 ~srQLPT~ilFq~gkE~~ 219 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGKEVS 219 (265)
T ss_pred ccccCCeEEEEccchhhh
Confidence 789999999998875
No 163
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.70 E-value=8.1e-08 Score=73.04 Aligned_cols=91 Identities=25% Similarity=0.363 Sum_probs=62.6
Q ss_pred EEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCC---------------------C
Q 021468 163 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT---------------------T 221 (312)
Q Consensus 163 ~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~---------------------~ 221 (312)
.+++..+..... .+++++|+||++||++|+.+.+.+..+++.+. +..+.+|.+ .
T Consensus 7 ~~~g~~~~~~~~-~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (123)
T cd03011 7 TLDGEQFDLESL-SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVINDP 81 (123)
T ss_pred cCCCCEeeHHHh-CCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence 344444544433 45899999999999999999999999987732 222222211 1
Q ss_pred cc--cccCCCCCCceEEEEeCCCcccCceeeccCcCHHHHHH
Q 021468 222 NE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYK 261 (312)
Q Consensus 222 ~~--~~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~ 261 (312)
+. ...|++.++|+++++.++.... .+.|..+.+.|.+
T Consensus 82 ~~~~~~~~~i~~~P~~~vid~~gi~~---~~~g~~~~~~~~~ 120 (123)
T cd03011 82 DGVISARWGVSVTPAIVIVDPGGIVF---VTTGVTSEWGLRL 120 (123)
T ss_pred CcHHHHhCCCCcccEEEEEcCCCeEE---EEeccCCHHHHHh
Confidence 11 1578999999999997665322 5678788887765
No 164
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.68 E-value=2.4e-06 Score=73.95 Aligned_cols=240 Identities=15% Similarity=0.130 Sum_probs=155.7
Q ss_pred ccCCccccccCCCCHHHHHHHHHhcCCCceEEeCCCcccccccC--CCccEEEEEeeCCchhhHHHHHHHHHHHcCCeEE
Q 021468 4 KETEKISYFDGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFES--PIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLI 81 (312)
Q Consensus 4 ~~d~~~~~y~g~~~~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~--~~~~~i~f~~~~~~c~~~~~~~~~la~~~~~~i~ 81 (312)
..++..+.|+|.++..-|..||.....+.|..++.+.-.+.+.. ....+|-+|.+.. ......|.++|..|...|.
T Consensus 119 fkd~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~--s~~yk~FeeAAe~F~p~Ik 196 (383)
T PF01216_consen 119 FKDGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSED--SEHYKEFEEAAEHFQPYIK 196 (383)
T ss_dssp EETTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTT--SHHHHHHHHHHHHCTTTSE
T ss_pred EECCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCC--cHHHHHHHHHHHhhcCcee
Confidence 46788999999999999999999999999999988764333221 1355566666641 1256678999999999999
Q ss_pred EEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceecc-CCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 021468 82 FVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL-DGELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGD 160 (312)
Q Consensus 82 f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~-~g~~~~~~i~~fi~~~l~~~~~~~~~s~~~~~~~~~~ 160 (312)
|.++= ++.+++++++.- --+-++++=...+... ..+.+.++|.+||+++-. +.
T Consensus 197 FfAtf------d~~vAk~L~lK~---nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r-----------------pt 250 (383)
T PF01216_consen 197 FFATF------DKKVAKKLGLKL---NEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR-----------------PT 250 (383)
T ss_dssp EEEE-------SHHHHHHHT-ST---T-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S------------------S
T ss_pred EEEEe------cchhhhhcCccc---cceeeeccccCCCccCCCCCCCHHHHHHHHHHhch-----------------hH
Confidence 98853 458999999973 4455665543344444 446799999999999743 56
Q ss_pred eEEEeCccchhhhhcC-CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCC-CC
Q 021468 161 VKIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-GF 232 (312)
Q Consensus 161 v~~l~~~~f~~~i~~~-~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~i~-~~ 232 (312)
++.|+..++.+...+. +...+|.|-..--+.-..+..++.++|+....++.+.++-||-+..+. ..|+|. .-
T Consensus 251 lrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~~ 330 (383)
T PF01216_consen 251 LRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLSR 330 (383)
T ss_dssp EEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TTS
T ss_pred hhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCccccC
Confidence 7889999977766443 466888888888888899999999999998887789999999887765 345654 34
Q ss_pred ceEEEEeCCCcccCceeec--c---CcCHHHHHHHHHhcCCCCccc
Q 021468 233 PTILFFPAGNKSFDPINVD--V---DRTVVALYKFLKKNASIPFKI 273 (312)
Q Consensus 233 Pt~~~~~~g~~~~~~~~y~--g---~~~~~~l~~fi~~~~~~~~~~ 273 (312)
|.+-+..-... ..+-+. + ..+.+.|..||...++-.+..
T Consensus 331 PqIGvVnvtda--dsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 331 PQIGVVNVTDA--DSVWMDMDDDDDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp -EEEEEETTTS--EEEEC-STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred CceeEEecccc--ccchhccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence 99988865443 223333 2 337899999999998655543
No 165
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.67 E-value=8.7e-08 Score=71.30 Aligned_cols=66 Identities=26% Similarity=0.531 Sum_probs=54.8
Q ss_pred CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCc-----------------------cc--ccCCCCC
Q 021468 177 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------------EH--HRAKSDG 231 (312)
Q Consensus 177 ~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------------------~~--~~~~i~~ 231 (312)
++.++|+||++||+.|+...+.+.++...+.. .++.++.++++.. .. ..|++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD-DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 68999999999999999999999999999873 3688888888874 22 5788889
Q ss_pred CceEEEEe-CCCc
Q 021468 232 FPTILFFP-AGNK 243 (312)
Q Consensus 232 ~Pt~~~~~-~g~~ 243 (312)
+|+++++. +|+.
T Consensus 98 ~P~~~l~d~~g~v 110 (116)
T cd02966 98 LPTTFLIDRDGRI 110 (116)
T ss_pred cceEEEECCCCcE
Confidence 99999995 4433
No 166
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.66 E-value=1.4e-06 Score=82.86 Aligned_cols=175 Identities=13% Similarity=0.085 Sum_probs=127.1
Q ss_pred ccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021468 50 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 128 (312)
Q Consensus 50 ~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~ 128 (312)
+.-+.+|.+. ..|..+...+++++..- ++|.+...+. . ... |++.+..++....+.|.|-..
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~-------~-------~~~--p~~~~~~~~~~~~i~f~g~P~ 82 (517)
T PRK15317 20 PIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSL-------D-------VRK--PSFSITRPGEDTGVRFAGIPM 82 (517)
T ss_pred CEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccC-------C-------CCC--CEEEEEcCCccceEEEEecCc
Confidence 3335566666 88999999999998765 4466644221 1 124 888888766666788999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCccchhhhhcCC-CcEEEEEEcCCChhhhcchHHHHHHHHHhc
Q 021468 129 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 207 (312)
Q Consensus 129 ~~~i~~fi~~~l~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~i~~~~-k~~lV~f~~~~C~~C~~~~~~~~~la~~~~ 207 (312)
-.++..||...+.-.- .-..|+.+..+. +..-+ ...+..|++++|++|......+++++....
T Consensus 83 g~Ef~s~i~~i~~~~~---------------~~~~l~~~~~~~-i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~ 146 (517)
T PRK15317 83 GHEFTSLVLALLQVGG---------------HPPKLDQEVIEQ-IKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP 146 (517)
T ss_pred cHHHHHHHHHHHHhcC---------------CCCCCCHHHHHH-HHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC
Confidence 9999999999876211 111243333333 43434 446889999999999999999999988643
Q ss_pred CCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeeccCcCHHHHHHHHHhcC
Q 021468 208 GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 267 (312)
Q Consensus 208 ~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 267 (312)
++.+-.+|...++. .+|++.++|++++ ++.. .+.|..+.++|.+.+.+..
T Consensus 147 ---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~-----~~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 147 ---NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE-----FGQGRMTLEEILAKLDTGA 198 (517)
T ss_pred ---CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE-----EEecCCCHHHHHHHHhccc
Confidence 58888899888887 7999999999976 4443 6788888888888887753
No 167
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.63 E-value=2.4e-07 Score=69.54 Aligned_cols=89 Identities=17% Similarity=0.128 Sum_probs=69.3
Q ss_pred hcCCCcEEEEEEcCCChhhhcchHH-H--HHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCCCceEEEEeC--CCcc
Q 021468 174 LDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFPA--GNKS 244 (312)
Q Consensus 174 ~~~~k~~lV~f~~~~C~~C~~~~~~-~--~~la~~~~~~~~v~~~~vd~~~~~~----~~~~i~~~Pt~~~~~~--g~~~ 244 (312)
...+|.++|+|+++||..|+.|... | .++.+.++. ++.+..+|.+.... ..+++.++|+++++.. |+.+
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 4567999999999999999998764 3 445566655 58888888876333 5789999999999954 5544
Q ss_pred cCceeeccCcCHHHHHHHHHhcC
Q 021468 245 FDPINVDVDRTVVALYKFLKKNA 267 (312)
Q Consensus 245 ~~~~~y~g~~~~~~l~~fi~~~~ 267 (312)
. ++.|..+.+.+...|++..
T Consensus 92 ~---~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 92 K---VWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred E---EEcCCCCHHHHHHHHHHHH
Confidence 3 7889999999999888753
No 168
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.59 E-value=1.9e-07 Score=69.96 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=32.9
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEE
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 217 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~v 217 (312)
.+++++|+||++||++|+.+.|.+.+++..+.+ .+.++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEE
Confidence 478999999999999999999999999888765 3444433
No 169
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.59 E-value=3.4e-07 Score=73.52 Aligned_cols=84 Identities=10% Similarity=0.144 Sum_probs=61.6
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc------------c---ccCCC--CCCceEEEEeCCCc
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------H---HRAKS--DGFPTILFFPAGNK 243 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~------------~---~~~~i--~~~Pt~~~~~~g~~ 243 (312)
+|.||++||++|+...|.+.++++++. +.+..++.+... . ..|++ .++|+.+++....+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 888999999999999999999999974 344434444321 0 24664 69999999954443
Q ss_pred ccCceeeccCcCHHHHHHHHHhcCCC
Q 021468 244 SFDPINVDVDRTVVALYKFLKKNASI 269 (312)
Q Consensus 244 ~~~~~~y~g~~~~~~l~~fi~~~~~~ 269 (312)
+ ....+.|..+.+.|.+.|.+.+..
T Consensus 149 i-~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 149 E-ALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred E-EEEEEECCCCHHHHHHHHHHHHhh
Confidence 2 112578999999999999888754
No 170
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.56 E-value=1.3e-07 Score=87.45 Aligned_cols=102 Identities=25% Similarity=0.376 Sum_probs=75.9
Q ss_pred EEEeCc-cchhhhhc-CCCcEEEEEEcCCChhhhcchHHHH-HHHHHhcCCCcEEEEEEeCCCccc------ccCCCCCC
Q 021468 162 KIVVGN-NFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYN-KLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGF 232 (312)
Q Consensus 162 ~~l~~~-~f~~~i~~-~~k~~lV~f~~~~C~~C~~~~~~~~-~la~~~~~~~~v~~~~vd~~~~~~------~~~~i~~~ 232 (312)
+.++.. ..++.+.+ .+|+++|+||++||..|+.+.+..- +....++- .+++..+.|.+.+.. +++++-+.
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~-~~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL-QDVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc-CCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 445554 55555533 2359999999999999999988854 33222222 369999999999876 58999999
Q ss_pred ceEEEEeCCCcccCceeeccCcCHHHHHHHHHhc
Q 021468 233 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 266 (312)
Q Consensus 233 Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~ 266 (312)
|++++|+.+.+ .+....|.++.+.+.+++++.
T Consensus 536 P~~~ff~~~g~--e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 536 PTYLFFGPQGS--EPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CEEEEECCCCC--cCcCCcceecHHHHHHHHHHh
Confidence 99999984433 233588999999999999875
No 171
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.54 E-value=5e-07 Score=68.54 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=47.5
Q ss_pred hcCCCcEEEEEEcCCChhhhcchHHH---HHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEe-CCCcc
Q 021468 174 LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFP-AGNKS 244 (312)
Q Consensus 174 ~~~~k~~lV~f~~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~-~g~~~ 244 (312)
...+|+++|+|++.||++|+.|...+ .++.+.+.. ++..+.++.+.... ...+ .++|+++|+. +|+.+
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi 93 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVR 93 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCc
Confidence 45789999999999999999998875 344454543 46666777653322 2233 6899999994 55544
No 172
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.52 E-value=5.1e-06 Score=78.98 Aligned_cols=176 Identities=15% Similarity=0.137 Sum_probs=126.0
Q ss_pred ccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021468 50 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 128 (312)
Q Consensus 50 ~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~ 128 (312)
+..+.+|.+. ..|+.+...+++++..- ++|.+...+... ... |++.+..++....+.|.|-..
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~~~-------------~~~--p~~~~~~~~~~~~i~f~g~P~ 83 (515)
T TIGR03140 20 PVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTADT-------------LRK--PSFTILRDGADTGIRFAGIPG 83 (515)
T ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecCCc-------------CCC--CeEEEecCCcccceEEEecCC
Confidence 3334455556 78999999999888765 457775433221 123 888887666556688899999
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCccchhhhhcCC-CcEEEEEEcCCChhhhcchHHHHHHHHHhc
Q 021468 129 LDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES-KDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 207 (312)
Q Consensus 129 ~~~i~~fi~~~l~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~i~~~~-k~~lV~f~~~~C~~C~~~~~~~~~la~~~~ 207 (312)
-.++..|+...+.-.- .-..|+.+..+. +..-+ ...+..|+++.|++|......+.+++....
T Consensus 84 g~Ef~s~i~~i~~~~~---------------~~~~l~~~~~~~-~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p 147 (515)
T TIGR03140 84 GHEFTSLVLAILQVGG---------------HGPKLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP 147 (515)
T ss_pred cHHHHHHHHHHHHhcC---------------CCCCCCHHHHHH-HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 9999999999876221 112244444433 43333 446889999999999998888888888754
Q ss_pred CCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeeccCcCHHHHHHHHHhcC
Q 021468 208 GVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 267 (312)
Q Consensus 208 ~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 267 (312)
++..-.+|...++. .+|++.++|++++ ++.. .+.|..+...+.+.+.+..
T Consensus 148 ---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~-----~~~g~~~~~~~~~~l~~~~ 199 (515)
T TIGR03140 148 ---NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE-----FHNGRMDLAELLEKLEETA 199 (515)
T ss_pred ---CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE-----EEecCCCHHHHHHHHhhcc
Confidence 47777889888877 7999999999976 4443 5778888888888776664
No 173
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.49 E-value=9.9e-08 Score=67.11 Aligned_cols=64 Identities=27% Similarity=0.572 Sum_probs=49.6
Q ss_pred hcCCCcEEEEEEcCCChhhhcchHHH---HHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCCCceEEEEe
Q 021468 174 LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFP 239 (312)
Q Consensus 174 ~~~~k~~lV~f~~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~-~~~~i~~~Pt~~~~~ 239 (312)
...+++++|+|+++||+.|+.|...+ .++...+.. ++.++.+|.+.... ..+...++|+++++.
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 45689999999999999999998877 445554554 69999999876655 333336799999985
No 174
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=98.48 E-value=4.3e-07 Score=64.02 Aligned_cols=96 Identities=17% Similarity=0.327 Sum_probs=72.8
Q ss_pred cccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCC--CcE-EEEEcC
Q 021468 40 NAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA--PKV-LAYTGN 115 (312)
Q Consensus 40 ~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~--~P~-~~~~~~ 115 (312)
.|.+++.+. ..++++|+.+ ..-...+..|.++|+..+|.-.+++|||.+.+ .+.||+++.|.... -|. +.=|.+
T Consensus 11 dfKKLLRTr-~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp~~~~LkHYKd 88 (112)
T cd03067 11 DFKKLLRTR-NNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKPKPVELKHYKD 88 (112)
T ss_pred HHHHHHhhc-CcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCCCcchhhcccC
Confidence 566667665 4455555555 88888889999999999999999999999866 88999999998221 132 333344
Q ss_pred CCCceeccCCCCCHHHHHHHHHH
Q 021468 116 DDAKKHILDGELTLDKIKTFGED 138 (312)
Q Consensus 116 ~~~~~~~~~g~~~~~~i~~fi~~ 138 (312)
| ..+-.|+...+..+|..|+.+
T Consensus 89 G-~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 89 G-DFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred C-CccccccchhhHHHHHHHhhC
Confidence 4 345578889999999999986
No 175
>smart00594 UAS UAS domain.
Probab=98.47 E-value=1.1e-06 Score=66.70 Aligned_cols=88 Identities=17% Similarity=0.147 Sum_probs=65.3
Q ss_pred hcCCCcEEEEEEcCCChhhhcchHHH---HHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCCCceEEEEe-CCC-c-
Q 021468 174 LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFP-AGN-K- 243 (312)
Q Consensus 174 ~~~~k~~lV~f~~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~----~~~~i~~~Pt~~~~~-~g~-~- 243 (312)
...+|.++|+|+++||..|..+...+ .++...++. ++.+..+|.+.... ..+++.++|++.++. +|. .
T Consensus 24 k~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~ 101 (122)
T smart00594 24 SRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRV 101 (122)
T ss_pred HhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCcee
Confidence 45678999999999999999987653 345555654 68888888887665 578999999999994 431 1
Q ss_pred ccCceeeccCcCHHHHHHHH
Q 021468 244 SFDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 244 ~~~~~~y~g~~~~~~l~~fi 263 (312)
..-.-+..|..+.++|+.++
T Consensus 102 ~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 102 IEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEeccccCCCCHHHHHHhh
Confidence 10112577889999998876
No 176
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.41 E-value=3.2e-06 Score=68.30 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=74.0
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCe-EEEEEEeCCCCc-------------------cccchhhhhCCCCC
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED-------------------VGKPVSEYFGITGE 105 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~-i~f~~vd~~~~~-------------------~~~~l~~~~~v~~~ 105 (312)
.++.++|.||++| +.|+...+.+.++++++.+. +.++.|+++... .+..+++.||+.+.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 4567888999999 99999999999999999864 888888876421 14578899999988
Q ss_pred CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021468 106 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 106 ~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
|++++++.++.....+.|..+.+++.+++++.
T Consensus 140 --P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 --PTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred --CeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 98888876655555678999999999998864
No 177
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.39 E-value=1.2e-06 Score=66.91 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=37.2
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeC
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 219 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~ 219 (312)
.++.++|+||++||++|....|.+.++.++++.. ++.++.++.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~-~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD-GLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC-CeEEEEecc
Confidence 4689999999999999999999999999999863 577766654
No 178
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.39 E-value=3.3e-07 Score=68.41 Aligned_cols=88 Identities=14% Similarity=0.226 Sum_probs=63.6
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHH---HHHHcCCeEEEEEEeCCCCc-----------------cccchhhhhCCCCC
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEE---AAKSFKGKLIFVYVQMDNED-----------------VGKPVSEYFGITGE 105 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~---la~~~~~~i~f~~vd~~~~~-----------------~~~~l~~~~~v~~~ 105 (312)
.+++.+++|+++| +.|+.+.+.+.+ +...++..+.++.++++... .+..+.+.+||.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 4667888999999 999999998875 56666667888888876532 02458899999999
Q ss_pred CCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021468 106 APKVLAYTGNDDAKKHILDGELTLDKIKTFG 136 (312)
Q Consensus 106 ~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi 136 (312)
|++++++.++.....+.|..+.++|.+++
T Consensus 84 --Pt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 84 --PTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp --SEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred --CEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999975443445678999999998875
No 179
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.37 E-value=1.6e-06 Score=59.94 Aligned_cols=72 Identities=13% Similarity=0.119 Sum_probs=56.5
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC-CCH
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTL 129 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~-~~~ 129 (312)
.|.||++| ++|+.+.|.++++++++...+.|..+|- . ..+..+|+.+. |++++ +|. . .+.|. .+.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~-~-----~~a~~~~v~~v--Pti~i--~G~--~-~~~G~~~~~ 68 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTD-M-----NEILEAGVTAT--PGVAV--DGE--L-VIMGKIPSK 68 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC-H-----HHHHHcCCCcC--CEEEE--CCE--E-EEEeccCCH
Confidence 36799999 9999999999999999998899988882 1 34678999988 99988 443 2 25664 455
Q ss_pred HHHHHHH
Q 021468 130 DKIKTFG 136 (312)
Q Consensus 130 ~~i~~fi 136 (312)
+.|.+++
T Consensus 69 ~~l~~~l 75 (76)
T TIGR00412 69 EEIKEIL 75 (76)
T ss_pred HHHHHHh
Confidence 7777765
No 180
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.37 E-value=2.5e-06 Score=70.07 Aligned_cols=85 Identities=16% Similarity=0.195 Sum_probs=56.0
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEe-------------C-------CCcccccCCCCCCceE
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD-------------G-------TTNEHHRAKSDGFPTI 235 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd-------------~-------~~~~~~~~~i~~~Pt~ 235 (312)
.+++++|+||++||+.|+...|.+.++.+.... ++.++..| . +......|++..+|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 568899999999999999999999998765432 34444311 0 0000146788999998
Q ss_pred EEEeCCCcccCceeeccC-cCHHHHHHHHHhc
Q 021468 236 LFFPAGNKSFDPINVDVD-RTVVALYKFLKKN 266 (312)
Q Consensus 236 ~~~~~g~~~~~~~~y~g~-~~~~~l~~fi~~~ 266 (312)
+++.....+ .+.|. ...+.+.+.++..
T Consensus 151 ~lID~~G~I----~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKI----RAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeE----EEccCCCCHHHHHHHHHHH
Confidence 888544343 45553 3456666666543
No 181
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.35 E-value=3.9e-06 Score=78.37 Aligned_cols=91 Identities=16% Similarity=0.120 Sum_probs=71.8
Q ss_pred cccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeC----------------------------CCCccc
Q 021468 44 VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQM----------------------------DNEDVG 93 (312)
Q Consensus 44 ~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~----------------------------~~~~~~ 93 (312)
....+++++|.||++| ++|+..+|.+.+++++++. .+.|+.|.. +. +
T Consensus 52 ~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~---~ 128 (521)
T PRK14018 52 YLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN---G 128 (521)
T ss_pred eccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccc---c
Confidence 3457778889999999 9999999999999999873 366655532 22 4
Q ss_pred cchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021468 94 KPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 94 ~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
..+.+.|+|.++ |+++++..++.....+.|..+.++|.++|+..
T Consensus 129 ~~lak~fgV~gi--PTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 129 GTLAQSLNISVY--PSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HHHHHHcCCCCc--CeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 578899999988 98877765555556778999999999999943
No 182
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.35 E-value=3.1e-06 Score=71.38 Aligned_cols=88 Identities=13% Similarity=0.040 Sum_probs=64.4
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCc------c--c------cc----C------C---
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------E--H------HR----A------K--- 228 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~------~--~------~~----~------~--- 228 (312)
.++.+||.||++||+.|....|.|.++.+++++. ++.++.|+++.. . . .+ | +
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 4689999999999999999999999999999874 577777776310 0 0 01 1 0
Q ss_pred ---------------------CCCCceEEEE-eCCCcccCceeeccCcCHHHHHHHHHhcC
Q 021468 229 ---------------------SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA 267 (312)
Q Consensus 229 ---------------------i~~~Pt~~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~ 267 (312)
+...|+.+++ ++|+-+. +|.|..+.+.|.+.|++.+
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~---~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVE---RYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEE---EECCCCCHHHHHHHHHHHh
Confidence 1124777777 4555443 7888888999999998875
No 183
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.32 E-value=2.6e-06 Score=57.20 Aligned_cols=55 Identities=4% Similarity=0.023 Sum_probs=48.2
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEE
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY 112 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~ 112 (312)
+.+|+++| ++|+.+.+.+++++..+. .+.|..+|.++ ++++.+.+|+.+. |++++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-~i~~~~id~~~---~~~l~~~~~i~~v--Pti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP-NISAEMIDAAE---FPDLADEYGVMSV--PAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC-ceEEEEEEccc---CHhHHHHcCCccc--CEEEE
Confidence 56789999 999999999999988754 49999999987 5689999999988 99855
No 184
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.30 E-value=4.6e-06 Score=72.21 Aligned_cols=92 Identities=9% Similarity=0.009 Sum_probs=68.5
Q ss_pred CCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCC------ccccchhhhhCCCCCCCcEEEEEcC-CCCc
Q 021468 48 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE------DVGKPVSEYFGITGEAPKVLAYTGN-DDAK 119 (312)
Q Consensus 48 ~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~------~~~~~l~~~~~v~~~~~P~~~~~~~-~~~~ 119 (312)
++..+|.||++| +.|+.+.|.+.+++.++.-.|..+.+|.... ..+..+.+.+||.+. |++++++. ++..
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~v--Ptl~Lv~~~~~~v 243 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTV--PAVFLADPDPNQF 243 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcC--CeEEEEECCCCEE
Confidence 457788899999 9999999999999999964444444443211 013468899999988 99999987 4433
Q ss_pred eeccCCCCCHHHHHHHHHHHhc
Q 021468 120 KHILDGELTLDKIKTFGEDFLE 141 (312)
Q Consensus 120 ~~~~~g~~~~~~i~~fi~~~l~ 141 (312)
.....|..+.+.|.+.+.....
T Consensus 244 ~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 244 TPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEeCCCCHHHHHHHHHHHhc
Confidence 3344588999999999988644
No 185
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.30 E-value=1.9e-05 Score=58.32 Aligned_cols=106 Identities=23% Similarity=0.362 Sum_probs=76.7
Q ss_pred eEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHH-HHhcCCCcEEEEEEeCCCccc-------ccCCC--C
Q 021468 161 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNEH-------HRAKS--D 230 (312)
Q Consensus 161 v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la-~~~~~~~~v~~~~vd~~~~~~-------~~~~i--~ 230 (312)
...|+.-+|++.| ..-+.+||-|-... +.-.-...|.++| ........+.++.|-+..+.. ++|++ .
T Consensus 6 ~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke 82 (126)
T PF07912_consen 6 CVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKE 82 (126)
T ss_dssp SEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCC
T ss_pred eeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcc
Confidence 4578889999987 45689999998754 2234456789999 555555689999998776543 57777 5
Q ss_pred CCceEEEEeCCCcccCceee--ccCcCHHHHHHHHHhcCCCCc
Q 021468 231 GFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKNASIPF 271 (312)
Q Consensus 231 ~~Pt~~~~~~g~~~~~~~~y--~g~~~~~~l~~fi~~~~~~~~ 271 (312)
.+|.+++|..+.. .|+.| .|+.+.++|.+|+++|++.-+
T Consensus 83 ~fPv~~LF~~~~~--~pv~~p~~~~~t~~~l~~fvk~~t~~yi 123 (126)
T PF07912_consen 83 DFPVIYLFVGDKE--EPVRYPFDGDVTADNLQRFVKSNTGLYI 123 (126)
T ss_dssp C-SEEEEEESSTT--SEEEE-TCS-S-HHHHHHHHHHTSS--T
T ss_pred cCCEEEEecCCCC--CCccCCccCCccHHHHHHHHHhCCCeee
Confidence 7899999995554 79999 889999999999999976443
No 186
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.29 E-value=2.6e-06 Score=70.40 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=38.5
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCC
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 220 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~ 220 (312)
.++++||.||++||++|+..+|.+.++..++.+. ++.+..++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~~ 81 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPTS 81 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecch
Confidence 4789999999999999999999999999999864 5777778763
No 187
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.27 E-value=4.3e-06 Score=80.01 Aligned_cols=90 Identities=6% Similarity=0.087 Sum_probs=72.8
Q ss_pred CCCccEEEEEeeC-CchhhHHHHH---HHHHHHcCCeEEEEEEeCCCCc-cccchhhhhCCCCCCCcEEEEEcCCCCc--
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYTGNDDAK-- 119 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~---~~la~~~~~~i~f~~vd~~~~~-~~~~l~~~~~v~~~~~P~~~~~~~~~~~-- 119 (312)
++++++|.||++| .+|+.+.+.. .++.+.+++ +.++.+|.++++ .+++++++|++.+. |++++++.+...
T Consensus 473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~v~g~--Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYNVLGL--PTILFFDAQGQEIP 549 (571)
T ss_pred cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcCCCCC--CEEEEECCCCCCcc
Confidence 4668888999999 9999998875 678888876 889999997631 25689999999988 999999744322
Q ss_pred eeccCCCCCHHHHHHHHHHH
Q 021468 120 KHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 120 ~~~~~g~~~~~~i~~fi~~~ 139 (312)
...+.|..+.+++.+++++.
T Consensus 550 ~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 550 DARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred cccccCCCCHHHHHHHHHHh
Confidence 35678999999999999875
No 188
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.26 E-value=1.6e-06 Score=65.24 Aligned_cols=95 Identities=17% Similarity=0.195 Sum_probs=64.1
Q ss_pred cccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEc-CCCCce-
Q 021468 44 VFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG-NDDAKK- 120 (312)
Q Consensus 44 ~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~-~~~~~~- 120 (312)
....+++.+|.|+++| ++|+.+.|.+.+++........|+.||.+... ..+...|++.+-..|++++++ +|...+
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~--~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE--EPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC--CchhhhcccCCCccceEEEECCCCCCchh
Confidence 3456778888999999 99999999999987765444566777776532 244578899862259999997 444222
Q ss_pred -eccCCCCCHHHHHHHHHHHh
Q 021468 121 -HILDGELTLDKIKTFGEDFL 140 (312)
Q Consensus 121 -~~~~g~~~~~~i~~fi~~~l 140 (312)
+...|..+.+.+..++....
T Consensus 93 ~~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 93 IINKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred hccCCCCccccccCCCHHHHH
Confidence 23345556555555555543
No 189
>PLN02412 probable glutathione peroxidase
Probab=98.20 E-value=7e-06 Score=65.98 Aligned_cols=89 Identities=15% Similarity=0.085 Sum_probs=63.4
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC-------cc-c------ccCC-------------
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-------NE-H------HRAK------------- 228 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~-------~~-~------~~~~------------- 228 (312)
.++.+||.||++||+.|+...+.+.++.+++++. ++.+..++++. .. . .+++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 4689999999999999999999999999999874 57777777532 10 0 1111
Q ss_pred ---------------------CCCCceEEEE-eCCCcccCceeeccCcCHHHHHHHHHhcCC
Q 021468 229 ---------------------SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS 268 (312)
Q Consensus 229 ---------------------i~~~Pt~~~~-~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 268 (312)
+.+.|+.+++ ++|+-+. .+.|..+.+.|.+.|+..+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~---~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQ---RYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEE---EECCCCCHHHHHHHHHHHHh
Confidence 2234676777 4444443 66788888899998887754
No 190
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.18 E-value=7.3e-06 Score=60.79 Aligned_cols=66 Identities=29% Similarity=0.626 Sum_probs=55.5
Q ss_pred CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCC-Cccc--ccCC--CCCCceEEEEeCCCcc
Q 021468 177 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNEH--HRAK--SDGFPTILFFPAGNKS 244 (312)
Q Consensus 177 ~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~-~~~~--~~~~--i~~~Pt~~~~~~g~~~ 244 (312)
++.+++.||++||++|+.+.|.+..++..+.. .+.+..+|.. .... ..++ +..+|++.++.++...
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 102 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV 102 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence 67889999999999999999999999999986 5788888886 3333 5777 8899999988887654
No 191
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.18 E-value=4.8e-06 Score=65.30 Aligned_cols=68 Identities=19% Similarity=0.455 Sum_probs=51.0
Q ss_pred CCCcEEEEEEcC-CChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc-----------------------cccCCCC-
Q 021468 176 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------------HHRAKSD- 230 (312)
Q Consensus 176 ~~k~~lV~f~~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-----------------------~~~~~i~- 230 (312)
.+++++|.||++ ||++|+...|.+.++.+.++.. ++.++.+..+... ...+++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 578999999999 9999999999999999987764 3555444433321 1356777
Q ss_pred --------CCceEEEEeCCCcc
Q 021468 231 --------GFPTILFFPAGNKS 244 (312)
Q Consensus 231 --------~~Pt~~~~~~g~~~ 244 (312)
++|+++++.+..++
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V 127 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKV 127 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBE
T ss_pred ccccccCCeecEEEEEECCCEE
Confidence 89999998665554
No 192
>PHA02125 thioredoxin-like protein
Probab=98.18 E-value=7.7e-06 Score=56.34 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=42.2
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEE
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA 111 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~ 111 (312)
+++|+++| ++|+.+.|.|.+++ +.++.||++. ++.++++|+|.+. |+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~---~~~l~~~~~v~~~--PT~~ 51 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDE---GVELTAKHHIRSL--PTLV 51 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCC---CHHHHHHcCCcee--CeEE
Confidence 67899999 99999999998764 3577888877 6799999999999 9986
No 193
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.17 E-value=1.2e-05 Score=64.88 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=64.2
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCc-------c------------------------c
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-------E------------------------H 224 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-------~------------------------~ 224 (312)
.++.+||+||++||+.|....+.+.++..++.+. ++.++.+..+.. . .
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 5688999999999999999999999999999753 577777776531 0 0
Q ss_pred ccCCCCCCceEEEEeCCCcccCceeecc-----------CcCHHHHHHHHHhcCC
Q 021468 225 HRAKSDGFPTILFFPAGNKSFDPINVDV-----------DRTVVALYKFLKKNAS 268 (312)
Q Consensus 225 ~~~~i~~~Pt~~~~~~g~~~~~~~~y~g-----------~~~~~~l~~fi~~~~~ 268 (312)
..|++...|+++++..+.++ .|.+ ..+...+.+-|+..+.
T Consensus 103 ~~~~v~~~P~~~lid~~G~v----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKL----VYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred HHcCCCcCCcEEEECCCCeE----EEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 24578889999999644443 3332 2355777777777654
No 194
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.9e-05 Score=67.41 Aligned_cols=119 Identities=18% Similarity=0.375 Sum_probs=93.2
Q ss_pred CCCeEEEeCccchhhhhcCCCc--EEEEEEc----CCChhhhcchHHHHHHHHHhcCC------CcEEEEEEeCCCccc-
Q 021468 158 DGDVKIVVGNNFDEIVLDESKD--VLLEIYA----PWCGHCQAFEPTYNKLAKHLRGV------DSIVIAKMDGTTNEH- 224 (312)
Q Consensus 158 ~~~v~~l~~~~f~~~i~~~~k~--~lV~f~~----~~C~~C~~~~~~~~~la~~~~~~------~~v~~~~vd~~~~~~- 224 (312)
...|..++++.|...+....++ .+|+|.| ..|.-|+.....+..+|..++.. .++-|+.||.++.+.
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 3578999999999999765554 6888887 44999999999999999987643 158999999998776
Q ss_pred -ccCCCCCCceEEEE-eC-CCcccCceeecc---CcCHHHHHHHHHhcCCCCcc-ccCCC
Q 021468 225 -HRAKSDGFPTILFF-PA-GNKSFDPINVDV---DRTVVALYKFLKKNASIPFK-IQKPT 277 (312)
Q Consensus 225 -~~~~i~~~Pt~~~~-~~-g~~~~~~~~y~g---~~~~~~l~~fi~~~~~~~~~-~~~~~ 277 (312)
+.+++.+.|++++| ++ |+.. +...+++ ....+++.+|+.+.+..... +.+|+
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~-~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~si~rPp 177 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKK-RSDQMDQQDLGFEAEQIAQFVADRTKVNVRSIQRPP 177 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccc-cCccchhhhcchhHHHHHHHHHHhhhheeeeeecCC
Confidence 89999999999999 33 3333 5555553 44589999999999886655 55554
No 195
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.15 E-value=1.2e-05 Score=60.91 Aligned_cols=91 Identities=10% Similarity=0.055 Sum_probs=64.8
Q ss_pred CcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCC-CC-----------------ccccchhhh
Q 021468 39 ENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD-NE-----------------DVGKPVSEY 99 (312)
Q Consensus 39 ~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~-~~-----------------~~~~~l~~~ 99 (312)
+.+......++..+|.||++| +.|+.+.|.+.++++++. .+.+. +|.. .+ +.+..+++.
T Consensus 11 ~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 88 (123)
T cd03011 11 EQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVA-LRSGDDGAVARFMQKKGYGFPVINDPDGVISAR 88 (123)
T ss_pred CEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEE-ccCCCHHHHHHHHHHcCCCccEEECCCcHHHHh
Confidence 333333344567888999999 999999999999998843 12222 2211 00 014579999
Q ss_pred hCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHH
Q 021468 100 FGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKT 134 (312)
Q Consensus 100 ~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~ 134 (312)
|+|.+. |++++++.++ ..+.+.|..+.+.|.+
T Consensus 89 ~~i~~~--P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 89 WGVSVT--PAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred CCCCcc--cEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 999988 9999998876 6777788888888764
No 196
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.13 E-value=8.6e-06 Score=61.74 Aligned_cols=97 Identities=14% Similarity=-0.002 Sum_probs=66.7
Q ss_pred CCcccccccCCCccEEEEEeeC-CchhhHHH-HH--HHHHHHcCCeEEEEEEeCCCCccccchhh--------hhCCCCC
Q 021468 38 RENAPSVFESPIKNQLLLFAVS-NDSEKLLP-VF--EEAAKSFKGKLIFVYVQMDNEDVGKPVSE--------YFGITGE 105 (312)
Q Consensus 38 ~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~-~~--~~la~~~~~~i~f~~vd~~~~~~~~~l~~--------~~~v~~~ 105 (312)
++.+......+++.+|.|+++| ..|+.+.+ +| .+++..++..+.++.+|.++ ++.+.+ .||+.++
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~---~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE---RPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc---CcHHHHHHHHHHHHhcCCCCC
Confidence 3445556678888899999999 99999987 34 35778777678999999877 456654 3588888
Q ss_pred CCcEEEEEcCCCCceeccCC-----CCCHHHHHHHHHHH
Q 021468 106 APKVLAYTGNDDAKKHILDG-----ELTLDKIKTFGEDF 139 (312)
Q Consensus 106 ~~P~~~~~~~~~~~~~~~~g-----~~~~~~i~~fi~~~ 139 (312)
|++++++.++...+...+ ..+...+..+++..
T Consensus 82 --Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 82 --PLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred --CEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 999999876533222211 13344555555543
No 197
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.13 E-value=2.4e-05 Score=58.59 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=75.2
Q ss_pred cCCCccEEEEEeeC-CchhhHHH-HH--HHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcC-CCCce
Q 021468 46 ESPIKNQLLLFAVS-NDSEKLLP-VF--EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN-DDAKK 120 (312)
Q Consensus 46 ~~~~~~~i~f~~~~-~~c~~~~~-~~--~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~-~~~~~ 120 (312)
+.++..+|+|+++| ..|+.+.. +| .++.+.++....+..+|.++.+ ...++..|++.++ |++++++. ++...
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e-~~~~~~~~~~~~~--P~~~~i~~~~g~~l 91 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE-GQRFLQSYKVDKY--PHIAIIDPRTGEVL 91 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCcc-HHHHHHHhCccCC--CeEEEEeCccCcEe
Confidence 45667788899999 99999876 45 5577788777888888987644 7899999999988 99999987 44455
Q ss_pred eccCCCCCHHHHHHHHHHHhc
Q 021468 121 HILDGELTLDKIKTFGEDFLE 141 (312)
Q Consensus 121 ~~~~g~~~~~~i~~fi~~~l~ 141 (312)
..+.|..+.+.+...+.+...
T Consensus 92 ~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 92 KVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred EEEcCCCCHHHHHHHHHHHHh
Confidence 667899999999999888754
No 198
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.8e-06 Score=68.60 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=66.8
Q ss_pred ceEEe-CCCccccccc--CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCccccchhhhhCCCCCC
Q 021468 32 LVTIF-TRENAPSVFE--SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEA 106 (312)
Q Consensus 32 ~v~~l-t~~~~~~~~~--~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~~v~~~~ 106 (312)
.+..+ +.+.+++... +...|+|-||+.| +.|....|.|.+|+.+|+. .++|++||..- .+....+|+|...+
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr---fpd~a~kfris~s~ 201 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR---FPDVAAKFRISLSP 201 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc---CcChHHheeeccCc
Confidence 44455 3334444443 4456788899999 9999999999999999985 59999999988 67999999998653
Q ss_pred ----CcEEEEEcCCCC
Q 021468 107 ----PKVLAYTGNDDA 118 (312)
Q Consensus 107 ----~P~~~~~~~~~~ 118 (312)
+||+.+|.+|+.
T Consensus 202 ~srQLPT~ilFq~gkE 217 (265)
T KOG0914|consen 202 GSRQLPTYILFQKGKE 217 (265)
T ss_pred ccccCCeEEEEccchh
Confidence 799999988874
No 199
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.10 E-value=1.1e-05 Score=52.73 Aligned_cols=58 Identities=33% Similarity=0.686 Sum_probs=47.9
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCCCceEEEEeCC
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAG 241 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~i~~~Pt~~~~~~g 241 (312)
+++||.+||+.|..+.+.+.++ ..... ++.+..++++.... ..+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCC--CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 32222 68999999888775 26788999999999877
No 200
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.10 E-value=2.1e-05 Score=56.00 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=56.8
Q ss_pred cEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCH
Q 021468 51 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL 129 (312)
Q Consensus 51 ~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~ 129 (312)
.+.+|+++| +.|....+.+.+++..+.+ +.|..+|.+. .+.++++|||.+. |++++ +|. ..+.|..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~-i~~~~vd~~~---~~e~a~~~~V~~v--Pt~vi--dG~---~~~~G~~~~ 83 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPN-IEHEMIDGAL---FQDEVEERGIMSV--PAIFL--NGE---LFGFGRMTL 83 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCC-ceEEEEEhHh---CHHHHHHcCCccC--CEEEE--CCE---EEEeCCCCH
Confidence 355677888 9999999999999988765 9999999988 5689999999999 99965 332 233576666
Q ss_pred HHHH
Q 021468 130 DKIK 133 (312)
Q Consensus 130 ~~i~ 133 (312)
+++.
T Consensus 84 ~e~~ 87 (89)
T cd03026 84 EEIL 87 (89)
T ss_pred HHHh
Confidence 6543
No 201
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.09 E-value=2.1e-05 Score=58.19 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=59.4
Q ss_pred CCccEEEEEeeC-CchhhHHHHHHHHHHHcC-CeEEEEEEeCCCC--------------------ccccchhhhhCCCCC
Q 021468 48 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE 105 (312)
Q Consensus 48 ~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~-~~i~f~~vd~~~~--------------------~~~~~l~~~~~v~~~ 105 (312)
++..+++||+.| +.|+...+.+.++..++. ..+.|+.|+++.. +....+.+.|++.+.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 567888899999 999999999999999996 3599999999873 002578899999988
Q ss_pred CCcEEEEEcCCCCceeccC
Q 021468 106 APKVLAYTGNDDAKKHILD 124 (312)
Q Consensus 106 ~~P~~~~~~~~~~~~~~~~ 124 (312)
|.+++++.++...+.+.
T Consensus 99 --P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 99 --PTTFLIDRDGRIRARHV 115 (116)
T ss_pred --ceEEEECCCCcEEEEec
Confidence 98888876554444443
No 202
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.09 E-value=1.6e-05 Score=60.75 Aligned_cols=82 Identities=16% Similarity=0.087 Sum_probs=59.5
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCC--------------------ccccchhhhhCCCCC
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE 105 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~~v~~~ 105 (312)
.++..+|+||+.| +.|....|.+.++++.+. +.|+.|+.+.. +.+..+++.|++.+.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~ 101 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGV 101 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCC
Confidence 3567888999999 999999999999998873 66666653210 014477888999988
Q ss_pred CCcEEEEEcCCCCceeccCCCCCHHHH
Q 021468 106 APKVLAYTGNDDAKKHILDGELTLDKI 132 (312)
Q Consensus 106 ~~P~~~~~~~~~~~~~~~~g~~~~~~i 132 (312)
|+.++++.++.....+.|..+.+.|
T Consensus 102 --P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 102 --PETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred --CeEEEECCCceEEEEEeccCChHhc
Confidence 8666776555456677888776654
No 203
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.09 E-value=1.5e-05 Score=64.50 Aligned_cols=83 Identities=6% Similarity=0.003 Sum_probs=53.3
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHH-hcCCCcEEEEEEeCCC-------------------------------cc
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKH-LRGVDSIVIAKMDGTT-------------------------------NE 223 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~-~~~~~~v~~~~vd~~~-------------------------------~~ 223 (312)
.+|.++|.|||+||++|+..+|.+.+++.+ +.-...-....||.+. ..
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 389999999999999999999999999653 2110000002233222 11
Q ss_pred cccCCCCCCceE-EEEe-CCCcccCceeeccCcCHHHHHH
Q 021468 224 HHRAKSDGFPTI-LFFP-AGNKSFDPINVDVDRTVVALYK 261 (312)
Q Consensus 224 ~~~~~i~~~Pt~-~~~~-~g~~~~~~~~y~g~~~~~~l~~ 261 (312)
...|++.++|+. +++. +|+-+. .+.|..+.+++.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~---~~~G~l~~ee~e~ 174 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKF---VKEGALSDSDIQT 174 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEE---EEeCCCCHHHHHH
Confidence 135788899887 6664 444433 6778777766655
No 204
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.08 E-value=3.9e-05 Score=60.46 Aligned_cols=92 Identities=12% Similarity=0.188 Sum_probs=64.0
Q ss_pred ccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc---c------ccchh-hhh---CCCCCCCcEE
Q 021468 45 FESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED---V------GKPVS-EYF---GITGEAPKVL 110 (312)
Q Consensus 45 ~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~---~------~~~l~-~~~---~v~~~~~P~~ 110 (312)
+..+...+|.||++| ++|++.+|.+.++++++. +.|..|+.+... + ..... ..+ ++.+. |+.
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~i--PTt 122 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVT--PAT 122 (153)
T ss_pred hhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCC--CeE
Confidence 344556688899999 999999999999999985 444444544321 0 01223 344 77777 988
Q ss_pred EEEcCCCCc-eeccCCCCCHHHHHHHHHHHh
Q 021468 111 AYTGNDDAK-KHILDGELTLDKIKTFGEDFL 140 (312)
Q Consensus 111 ~~~~~~~~~-~~~~~g~~~~~~i~~fi~~~l 140 (312)
++++..+.. .....|..+.+.+.+.+.+.+
T Consensus 123 ~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 123 FLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred EEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 888766443 335679999999998887753
No 205
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.05 E-value=9.9e-06 Score=55.16 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=49.8
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCCCceEEEEeCCCcccCceeeccCc
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGNKSFDPINVDVDR 254 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~ 254 (312)
+.+|+++||++|+.+.+.|.+. ++.+..+|++.+.. ..+++.++|++++. |. .+.| .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~------~~~g-~ 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK------IIVG-F 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE------EEee-C
Confidence 5789999999999998877652 46777888876643 34788999999884 32 3445 4
Q ss_pred CHHHHHHHHH
Q 021468 255 TVVALYKFLK 264 (312)
Q Consensus 255 ~~~~l~~fi~ 264 (312)
+.+.|.+||+
T Consensus 65 ~~~~i~~~i~ 74 (74)
T TIGR02196 65 DPEKLDQLLE 74 (74)
T ss_pred CHHHHHHHhC
Confidence 6788888774
No 206
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.05 E-value=2.5e-05 Score=61.77 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=37.7
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeC
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 219 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~ 219 (312)
.++.+||.||++||++|+..+|.+.++.++++.. ++.+..+++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEec
Confidence 4688999999999999999999999999999864 577877775
No 207
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.00 E-value=2.7e-05 Score=65.02 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=60.4
Q ss_pred CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCc-----------cc--ccCCCCCCceEEEEeCCCc
Q 021468 177 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------EH--HRAKSDGFPTILFFPAGNK 243 (312)
Q Consensus 177 ~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~-----------~~--~~~~i~~~Pt~~~~~~g~~ 243 (312)
++.-|++||.+.|+.|..+.|++..++..+. +.+..|+.+.. .. .++++..+|++++...+..
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK 195 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC
Confidence 5667999999999999999999999999984 44444454422 11 5789999999999966553
Q ss_pred ccCceeeccCcCHHHHHHHH
Q 021468 244 SFDPINVDVDRTVVALYKFL 263 (312)
Q Consensus 244 ~~~~~~y~g~~~~~~l~~fi 263 (312)
...+ .-.|.++.++|.+-|
T Consensus 196 ~~~p-v~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 196 KWYP-VSQGFMSLDELEDRI 214 (215)
T ss_pred eEEE-EeeecCCHHHHHHhh
Confidence 2122 344788888887654
No 208
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.99 E-value=1.9e-05 Score=54.38 Aligned_cols=68 Identities=22% Similarity=0.361 Sum_probs=45.6
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc-----CCCCCCceEEEEeCCCcccCceeeccC
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR-----AKSDGFPTILFFPAGNKSFDPINVDVD 253 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~-----~~i~~~Pt~~~~~~g~~~~~~~~y~g~ 253 (312)
+++|+++||++|+.+++.|.+++ +.+..+|++.... .. +++.++|++ ++.+|..+ . .
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~--------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l-----~--~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG--------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL-----T--N 65 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC--------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe-----c--C
Confidence 67899999999999999887663 3444577766544 22 378899997 56666442 1 2
Q ss_pred cCHHHHHHHHH
Q 021468 254 RTVVALYKFLK 264 (312)
Q Consensus 254 ~~~~~l~~fi~ 264 (312)
.+..++.+.|.
T Consensus 66 ~~~~~~~~~l~ 76 (77)
T TIGR02200 66 PSAAQVKAKLQ 76 (77)
T ss_pred CCHHHHHHHhh
Confidence 34456665554
No 209
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.98 E-value=4.3e-05 Score=61.75 Aligned_cols=90 Identities=18% Similarity=0.086 Sum_probs=66.9
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCC--------------------ccccchhhhhCCCCC
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNE--------------------DVGKPVSEYFGITGE 105 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~--------------------~~~~~l~~~~~v~~~ 105 (312)
.++..++.||++| ++|+...|.+.+++++ + +.++.|+.+.. +.+..+.+.|++.+.
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~-~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~ 138 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--G-LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGA 138 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--C-CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeC
Confidence 4667888999999 9999999999998764 2 55555553211 003356678899887
Q ss_pred CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021468 106 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 141 (312)
Q Consensus 106 ~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~ 141 (312)
|+.++++.++...+.+.|..+.+.+.+++.+++.
T Consensus 139 --P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 139 --PETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred --CeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 8766666555556777899999999999999874
No 210
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.97 E-value=2.3e-05 Score=56.45 Aligned_cols=68 Identities=25% Similarity=0.394 Sum_probs=51.3
Q ss_pred CCccEEEEEeeC-CchhhHHHHHHHHHHHcC--CeEEEEEEeCCCCc----------------------cccchhhhhCC
Q 021468 48 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFK--GKLIFVYVQMDNED----------------------VGKPVSEYFGI 102 (312)
Q Consensus 48 ~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~--~~i~f~~vd~~~~~----------------------~~~~l~~~~~v 102 (312)
++..+++|+++| ++|....|.+.++.++|+ +.+.|+.|.+++.. ....+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 457889999999 999999999999999999 67999999977642 12346677788
Q ss_pred CCCCCcEEEEEcCCC
Q 021468 103 TGEAPKVLAYTGNDD 117 (312)
Q Consensus 103 ~~~~~P~~~~~~~~~ 117 (312)
.+. |++++++.++
T Consensus 81 ~~i--P~~~lld~~G 93 (95)
T PF13905_consen 81 NGI--PTLVLLDPDG 93 (95)
T ss_dssp TSS--SEEEEEETTS
T ss_pred CcC--CEEEEECCCC
Confidence 777 8777776543
No 211
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.96 E-value=0.00019 Score=53.02 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=73.7
Q ss_pred ceEEeCCCcccccccCCCccEEEEEeeCCchhhHHHHHHHHH-HHc--CCeEEEEEEeCCC--CccccchhhhhCCCCCC
Q 021468 32 LVTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAA-KSF--KGKLIFVYVQMDN--EDVGKPVSEYFGITGEA 106 (312)
Q Consensus 32 ~v~~lt~~~~~~~~~~~~~~~i~f~~~~~~c~~~~~~~~~la-~~~--~~~i~f~~vd~~~--~~~~~~l~~~~~v~~~~ 106 (312)
-...|+.-+|++++.+.+..+|-|=.. -+.-.-...|.++| +.. ...+.++.|-..+ +.+|.+|.++|||..-.
T Consensus 5 G~v~LD~~tFdKvi~kf~~~LVKFD~a-yPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~ 83 (126)
T PF07912_consen 5 GCVPLDELTFDKVIPKFKYVLVKFDVA-YPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED 83 (126)
T ss_dssp TSEEESTTHHHHHGGGSSEEEEEEEES-S--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred ceeeccceehhheeccCceEEEEEecc-CCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence 456889999999999886666666433 33334445566666 332 2358888877644 23589999999997665
Q ss_pred CcEEEEEcCCCCceecc--CCCCCHHHHHHHHHHH
Q 021468 107 PKVLAYTGNDDAKKHIL--DGELTLDKIKTFGEDF 139 (312)
Q Consensus 107 ~P~~~~~~~~~~~~~~~--~g~~~~~~i~~fi~~~ 139 (312)
.|.+.+|..+...+..| .|..+.++|++|+.+.
T Consensus 84 fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 84 FPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp -SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHT
T ss_pred CCEEEEecCCCCCCccCCccCCccHHHHHHHHHhC
Confidence 69999999777777777 8999999999999985
No 212
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.95 E-value=3.3e-05 Score=61.48 Aligned_cols=105 Identities=22% Similarity=0.267 Sum_probs=83.8
Q ss_pred CCeEEEe-CccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceE
Q 021468 159 GDVKIVV-GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTI 235 (312)
Q Consensus 159 ~~v~~l~-~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~ 235 (312)
+....+. ..+|-+.+. ....++++||-+.-..|+-|-..|+.||..+-. ..|++||+...+. .+++|.-+|++
T Consensus 66 G~y~ev~~Ekdf~~~~~-kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v 141 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEVK-KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTV 141 (211)
T ss_pred ceEEEeccHHHHHHHhh-cCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeE
Confidence 3445555 567777653 467799999999999999999999999999876 7999999998887 89999999999
Q ss_pred EEEeCCCcccCceeec--c---CcCHHHHHHHHHhcC
Q 021468 236 LFFPAGNKSFDPINVD--V---DRTVVALYKFLKKNA 267 (312)
Q Consensus 236 ~~~~~g~~~~~~~~y~--g---~~~~~~l~~fi~~~~ 267 (312)
.+|++|..++..+.|. | .++.+.|..-|..-.
T Consensus 142 ~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~ 178 (211)
T KOG1672|consen 142 ALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAKSG 178 (211)
T ss_pred EEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhcc
Confidence 9999998887666666 3 455666666665543
No 213
>smart00594 UAS UAS domain.
Probab=97.94 E-value=5.9e-05 Score=57.22 Aligned_cols=88 Identities=19% Similarity=0.290 Sum_probs=69.9
Q ss_pred cCCCccEEEEEeeC-CchhhHHHH-H--HHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCC---
Q 021468 46 ESPIKNQLLLFAVS-NDSEKLLPV-F--EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA--- 118 (312)
Q Consensus 46 ~~~~~~~i~f~~~~-~~c~~~~~~-~--~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~--- 118 (312)
..++..+|+|+++| ..|+.+... | .++.+.++..+.+..+|.+..+ +..++..|+++++ |+++++....+
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-g~~l~~~~~~~~~--P~~~~l~~~~g~~~ 101 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-GQRVSQFYKLDSF--PYVAIVDPRTGQRV 101 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-HHHHHHhcCcCCC--CEEEEEecCCCcee
Confidence 45668889999999 999998764 4 4566777777888889988766 7899999999998 99999876642
Q ss_pred --ceeccCCCCCHHHHHHHH
Q 021468 119 --KKHILDGELTLDKIKTFG 136 (312)
Q Consensus 119 --~~~~~~g~~~~~~i~~fi 136 (312)
......|..+.++|..++
T Consensus 102 ~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 102 IEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEeccccCCCCHHHHHHhh
Confidence 233467999999998876
No 214
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.94 E-value=7.5e-05 Score=61.07 Aligned_cols=91 Identities=10% Similarity=0.041 Sum_probs=67.9
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc--------------------cccchhhhhCCCCC
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------------------VGKPVSEYFGITGE 105 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~--------------------~~~~l~~~~~v~~~ 105 (312)
.++..+|.||++| ++|++.+|.+.+++.+ + +.|+.|+.++.. ....+...|||.+.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~-~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~ 143 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--G-IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA 143 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--C-CEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcC
Confidence 5667888899999 9999999999998763 3 666667643311 01234557899888
Q ss_pred CCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021468 106 APKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG 142 (312)
Q Consensus 106 ~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~~ 142 (312)
|+.++++.++...+.+.|..+.+.+.+.+...+..
T Consensus 144 --P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 144 --PETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEK 178 (185)
T ss_pred --CeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHH
Confidence 87667765555667778999999999999998763
No 215
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.93 E-value=2.7e-05 Score=58.18 Aligned_cols=65 Identities=23% Similarity=0.427 Sum_probs=44.4
Q ss_pred CCCcEEEEEEc-------CCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc--------c---ccCCCCCCceEEE
Q 021468 176 ESKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------H---HRAKSDGFPTILF 237 (312)
Q Consensus 176 ~~k~~lV~f~~-------~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--------~---~~~~i~~~Pt~~~ 237 (312)
.++.++|+|++ +||+.|....|.+.+.-..... +..++.+.+.... - +.++++++||++-
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 45788899985 6999999999999998887655 5677767664422 1 2589999999999
Q ss_pred EeCCC
Q 021468 238 FPAGN 242 (312)
Q Consensus 238 ~~~g~ 242 (312)
|..++
T Consensus 96 ~~~~~ 100 (119)
T PF06110_consen 96 WETGE 100 (119)
T ss_dssp CTSS-
T ss_pred ECCCC
Confidence 97764
No 216
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.88 E-value=4.9e-05 Score=58.34 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=52.8
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC---eEEEEEEeCCCCc---------------------cccchhhhhC
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNED---------------------VGKPVSEYFG 101 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~---~i~f~~vd~~~~~---------------------~~~~l~~~~~ 101 (312)
.++..+|.||++| +.|+...|.+.+++.++.+ .+.++.|+.+... ....+++.||
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4567888899999 9999999999999998864 3666666655321 0145778999
Q ss_pred CCCCCCcEEEEEcCCC
Q 021468 102 ITGEAPKVLAYTGNDD 117 (312)
Q Consensus 102 v~~~~~P~~~~~~~~~ 117 (312)
|.+. |++++++.++
T Consensus 97 v~~~--P~~~lid~~G 110 (131)
T cd03009 97 IEGI--PTLIILDADG 110 (131)
T ss_pred CCCC--CEEEEECCCC
Confidence 9988 9998987554
No 217
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=3.6e-05 Score=62.89 Aligned_cols=176 Identities=13% Similarity=0.127 Sum_probs=104.6
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCC
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG 125 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g 125 (312)
.....++.|++.| ..|.++..++..+|+.+ ..+.|+.++.+. ++.++..+.+... |.+.++..+... -...|
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~---~~eis~~~~v~~v--p~~~~~~~~~~v-~~l~~ 88 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEE---FPEISNLIAVEAV--PYFVFFFLGEKV-DRLSG 88 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhh---hhHHHHHHHHhcC--ceeeeeecchhh-hhhhc
Confidence 5556677899999 99999999999999999 559999999988 6799999999988 988888666522 12233
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEe---CccchhhhhcC-CCcEEEEEE-----cCCChhhhcch
Q 021468 126 ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVV---GNNFDEIVLDE-SKDVLLEIY-----APWCGHCQAFE 196 (312)
Q Consensus 126 ~~~~~~i~~fi~~~l~~~~~~~~~s~~~~~~~~~~v~~l~---~~~f~~~i~~~-~k~~lV~f~-----~~~C~~C~~~~ 196 (312)
...... ..-+..+..... . .+...+ ...+.... ....+..+... +..-++.|. .|.|+..+++.
T Consensus 89 ~~~~~~-~~~~~~~~~~~~-~--~~~~~~---~~~~~e~~~~~~~~~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v 161 (227)
T KOG0911|consen 89 ADPPFL-VSKVEKLAESGS-A--SLGMGL---STTIRETQTTNETDLDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLV 161 (227)
T ss_pred cCcHHH-HHHHHHhhhhcc-c--ccCCCC---CcchhcccccchhhHHHHHHHhcccCeEEEEecCCCCcccccccHHHH
Confidence 222222 222222211111 0 000000 01111100 00133333222 222344455 37799988877
Q ss_pred HHHHHHHHHhcCCCcEEEEEEeCCCcccccCC---CCCCceE-EEEeCCCcc
Q 021468 197 PTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAK---SDGFPTI-LFFPAGNKS 244 (312)
Q Consensus 197 ~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~---i~~~Pt~-~~~~~g~~~ 244 (312)
.++... ++.+..+|+..+..-+.+ ...+||+ -+|.+|.-+
T Consensus 162 ~iL~~~--------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFi 205 (227)
T KOG0911|consen 162 GILQSH--------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFI 205 (227)
T ss_pred HHHHHc--------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEec
Confidence 766655 567888898887763332 3456776 566677543
No 218
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.86 E-value=7.1e-05 Score=52.83 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=55.3
Q ss_pred EEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc-----c-c--cCCCCCCceEEEEeCCCcccCceeec
Q 021468 180 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----H-H--RAKSDGFPTILFFPAGNKSFDPINVD 251 (312)
Q Consensus 180 ~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-----~-~--~~~i~~~Pt~~~~~~g~~~~~~~~y~ 251 (312)
.+++|+.+||++|..+...|++++..+. ++.+..+|++... . . ..+..++|+++ .+|+.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i------- 69 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI------- 69 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE-------
Confidence 4788999999999999999999987653 3677777877642 1 1 22357899976 356543
Q ss_pred cCcCHHHHHHHHHhcCC
Q 021468 252 VDRTVVALYKFLKKNAS 268 (312)
Q Consensus 252 g~~~~~~l~~fi~~~~~ 268 (312)
| ..++|.++++++++
T Consensus 70 g--g~~~~~~~~~~~~~ 84 (85)
T PRK11200 70 G--GCTDFEAYVKENLG 84 (85)
T ss_pred c--CHHHHHHHHHHhcc
Confidence 2 46889999998865
No 219
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.83 E-value=9.1e-05 Score=53.57 Aligned_cols=85 Identities=20% Similarity=0.287 Sum_probs=62.7
Q ss_pred hhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeecc
Q 021468 173 VLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDV 252 (312)
Q Consensus 173 i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~y~g 252 (312)
+....+.++|-|+.++|+ .....|.++|..++. .+.|+.+.- ......+++ .-|++++|+.... .++.|.|
T Consensus 13 ~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~--~~~F~~~~~-~~~~~~~~~-~~~~i~l~~~~~~--~~~~y~g 83 (97)
T cd02981 13 FLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD--DYGFGHTSD-KEVAKKLKV-KPGSVVLFKPFEE--EPVEYDG 83 (97)
T ss_pred HhccCCeEEEEEECCCCc---HHHHHHHHHHHhccc--CCeEEEECh-HHHHHHcCC-CCCceEEeCCccc--CCccCCC
Confidence 345678889999998876 456789999999987 588887662 222244555 4599999976533 4568999
Q ss_pred CcCHHHHHHHHHhc
Q 021468 253 DRTVVALYKFLKKN 266 (312)
Q Consensus 253 ~~~~~~l~~fi~~~ 266 (312)
..+.+.|.+||..+
T Consensus 84 ~~~~~~l~~fi~~~ 97 (97)
T cd02981 84 EFTEESLVEFIKDN 97 (97)
T ss_pred CCCHHHHHHHHHhC
Confidence 88899999999764
No 220
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.83 E-value=0.00013 Score=59.59 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=35.1
Q ss_pred CCCcE-EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeC
Q 021468 176 ESKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 219 (312)
Q Consensus 176 ~~k~~-lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~ 219 (312)
.++++ ++.+|++||++|+..+|.+.++.+++++. ++.+..+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~ 82 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPC 82 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEec
Confidence 35654 56679999999999999999999999864 577777775
No 221
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.82 E-value=3.9e-05 Score=60.64 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=37.2
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCC
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 220 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~ 220 (312)
.++.++|.||++||+ |...+|.+.++..++++. ++.+..++++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEeccC
Confidence 478999999999999 999999999999999764 5777777654
No 222
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.81 E-value=2.7e-05 Score=60.42 Aligned_cols=69 Identities=23% Similarity=0.511 Sum_probs=50.9
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCC---cEEEEEEeCCCccc-------------------------ccC
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD---SIVIAKMDGTTNEH-------------------------HRA 227 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~---~v~~~~vd~~~~~~-------------------------~~~ 227 (312)
.+|.+.++|.+.||++|+.+.|.+.++-..++.+. .+.|+.-|.+.... .+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 46999999999999999999999999999888742 24444444332110 256
Q ss_pred CCCCCceEEEE-eCCCcc
Q 021468 228 KSDGFPTILFF-PAGNKS 244 (312)
Q Consensus 228 ~i~~~Pt~~~~-~~g~~~ 244 (312)
++.++|++.+. ++|..+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 89999999887 556554
No 223
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.79 E-value=0.00011 Score=50.64 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=51.6
Q ss_pred EEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCCCceEEEEeCCCcccCceeecc-CcCHHHHH
Q 021468 183 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALY 260 (312)
Q Consensus 183 ~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~i~~~Pt~~~~~~g~~~~~~~~y~g-~~~~~~l~ 260 (312)
.+++++|+.|..+...+.+++..+. +.+-.+|...... .+|++.++|++++ +|+. .+.| ..+.++|.
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~~-----~~~G~~p~~~el~ 72 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEIEKYGVMSVPALVI--NGKV-----VFVGRVPSKEELK 72 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHHHHTT-SSSSEEEE--TTEE-----EEESS--HHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHHHHcCCCCCCEEEE--CCEE-----EEEecCCCHHHHH
Confidence 3478889999999999999988873 4445556544333 7899999999955 5543 7888 77889999
Q ss_pred HHHH
Q 021468 261 KFLK 264 (312)
Q Consensus 261 ~fi~ 264 (312)
+||+
T Consensus 73 ~~l~ 76 (76)
T PF13192_consen 73 ELLE 76 (76)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8874
No 224
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.79 E-value=0.00013 Score=62.04 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=63.3
Q ss_pred CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------ccCCCCCCceEEEEeCCCccc
Q 021468 177 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------HRAKSDGFPTILFFPAGNKSF 245 (312)
Q Consensus 177 ~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------~~~~i~~~Pt~~~~~~g~~~~ 245 (312)
++.-|++||.+.|+.|..+.|.+..++.++.= .+..+.+|....+. .++++..+|++++...+....
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI--SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 45679999999999999999999999999853 34444444332111 478899999999986654421
Q ss_pred CceeeccCcCHHHHHHHHHhcC
Q 021468 246 DPINVDVDRTVVALYKFLKKNA 267 (312)
Q Consensus 246 ~~~~y~g~~~~~~l~~fi~~~~ 267 (312)
.++ -.|.++.++|.+-|-..+
T Consensus 228 ~pv-~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 228 SPL-AYGFISQDELKERILNVL 248 (256)
T ss_pred EEE-eeccCCHHHHHHHHHHHH
Confidence 333 337889999988776553
No 225
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.78 E-value=0.00022 Score=57.45 Aligned_cols=86 Identities=10% Similarity=0.159 Sum_probs=63.8
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc--------c--ccchhhhhCC--CCCCCcEEEEEcCCCC
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--------V--GKPVSEYFGI--TGEAPKVLAYTGNDDA 118 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~--------~--~~~l~~~~~v--~~~~~P~~~~~~~~~~ 118 (312)
+|.||++| ++|++..|.+.++++++. +.+..|+.++.. + ...+...||+ .++ |+.++++.+..
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~i--PttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVAT--PTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCC--CeEEEEeCCCc
Confidence 78899999 999999999999999985 555555554320 0 1225567885 456 88878876654
Q ss_pred cee-ccCCCCCHHHHHHHHHHHhc
Q 021468 119 KKH-ILDGELTLDKIKTFGEDFLE 141 (312)
Q Consensus 119 ~~~-~~~g~~~~~~i~~fi~~~l~ 141 (312)
..+ .+.|..+.+.|.+.+.+.++
T Consensus 149 i~~~~~~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHh
Confidence 433 57899999999999998876
No 226
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.76 E-value=0.00011 Score=59.29 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=87.1
Q ss_pred CCeEEEeC-ccchhhhhcCCC--cEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-ccCCCCCCce
Q 021468 159 GDVKIVVG-NNFDEIVLDESK--DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPT 234 (312)
Q Consensus 159 ~~v~~l~~-~~f~~~i~~~~k--~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~~~~i~~~Pt 234 (312)
+.|..++. +.|.+.|...-+ .++|+.|-+.-..|..+...+.-||..+.. ++|.++-.+.-.. .+|....+|+
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~---vKFckikss~~gas~~F~~n~lP~ 214 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI---VKFCKIKSSNTGASDRFSLNVLPT 214 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc---eeEEEeeeccccchhhhcccCCce
Confidence 45777665 888888854433 478899999999999999999999998876 8999988766555 7999999999
Q ss_pred EEEEeCCCcccCceeec---c-CcCHHHHHHHHHhcCC
Q 021468 235 ILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKNAS 268 (312)
Q Consensus 235 ~~~~~~g~~~~~~~~y~---g-~~~~~~l~~fi~~~~~ 268 (312)
+++|++|.-+++++... | .+....|..||++..-
T Consensus 215 LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 215 LLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGL 252 (273)
T ss_pred EEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence 99999999887666544 3 6678899999999853
No 227
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.75 E-value=0.00016 Score=74.19 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=72.6
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCe-EEEEEEeCC---CC---------------------ccccchhhhh
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD---NE---------------------DVGKPVSEYF 100 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~-i~f~~vd~~---~~---------------------~~~~~l~~~~ 100 (312)
.++.++|.||++| ++|+...|.|.+++++|+++ +.|+.|.+. ++ +....+.+.|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4667888899999 99999999999999999875 677766421 10 0134577889
Q ss_pred CCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021468 101 GITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 141 (312)
Q Consensus 101 ~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~ 141 (312)
+|.+. |++++++.++.....+.|....+.|.+++...+.
T Consensus 499 ~V~~i--Pt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 499 GVSSW--PTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CCCcc--ceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99988 9999996555455567898999999999999864
No 228
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.73 E-value=0.00015 Score=55.74 Aligned_cols=69 Identities=17% Similarity=0.205 Sum_probs=52.2
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC---eEEEEEEeCCCCc----------------------cccchhhhh
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNED----------------------VGKPVSEYF 100 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~---~i~f~~vd~~~~~----------------------~~~~l~~~~ 100 (312)
.++..+|.|+++| ++|+..+|.+.+++.++.+ .+.++.|+.+... ....+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4567888899999 9999999999999998875 3677777665421 012345679
Q ss_pred CCCCCCCcEEEEEcCCC
Q 021468 101 GITGEAPKVLAYTGNDD 117 (312)
Q Consensus 101 ~v~~~~~P~~~~~~~~~ 117 (312)
+|.+. |++++++.++
T Consensus 96 ~v~~i--Pt~~lid~~G 110 (132)
T cd02964 96 KVEGI--PTLVVLKPDG 110 (132)
T ss_pred CCCCC--CEEEEECCCC
Confidence 99988 9988887553
No 229
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.71 E-value=0.00013 Score=55.14 Aligned_cols=68 Identities=22% Similarity=0.462 Sum_probs=52.3
Q ss_pred CCCcEEEEEEcC-CChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------ccCCCC-
Q 021468 176 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSD- 230 (312)
Q Consensus 176 ~~k~~lV~f~~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------~~~~i~- 230 (312)
.+++++|.||+. ||+.|....+.+.++..+++.. ++.++.+..+.... ..|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 568999999999 9999999999999999999864 57887777665321 234555
Q ss_pred -----CCceEEEEeCCCcc
Q 021468 231 -----GFPTILFFPAGNKS 244 (312)
Q Consensus 231 -----~~Pt~~~~~~g~~~ 244 (312)
.+|+++++..+..+
T Consensus 103 ~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp TTTSEESEEEEEEETTSBE
T ss_pred ccCCceEeEEEEECCCCEE
Confidence 77888888665543
No 230
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.70 E-value=0.00017 Score=62.02 Aligned_cols=104 Identities=16% Similarity=0.176 Sum_probs=69.3
Q ss_pred CCCceEEeCC-CcccccccC---CCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCC
Q 021468 29 KLPLVTIFTR-ENAPSVFES---PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT 103 (312)
Q Consensus 29 ~~~~v~~lt~-~~~~~~~~~---~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~ 103 (312)
....|.+++. +.|...+.. ...++|.||.+. ..|..+-..|..||.+|.. +.|+.|.... - .++..|.+.
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~---~-~~~~~f~~~ 197 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASK---C-PASENFPDK 197 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECG---C-CTTTTS-TT
T ss_pred cCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhc---c-CcccCCccc
Confidence 3567778865 566555543 223455688888 9999999999999999999 9999999865 2 367889998
Q ss_pred CCCCcEEEEEcCCCCce--ec---c-CCCCCHHHHHHHHHHH
Q 021468 104 GEAPKVLAYTGNDDAKK--HI---L-DGELTLDKIKTFGEDF 139 (312)
Q Consensus 104 ~~~~P~~~~~~~~~~~~--~~---~-~g~~~~~~i~~fi~~~ 139 (312)
.. |++++|.+|.... +. . ....+...|..|+.++
T Consensus 198 ~L--PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 198 NL--PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp C---SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CC--CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 77 9999999886321 11 1 2357888999999986
No 231
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.67 E-value=0.00029 Score=59.71 Aligned_cols=88 Identities=17% Similarity=0.113 Sum_probs=64.5
Q ss_pred CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------ccCCCCCCceEEEEeCCCccc
Q 021468 177 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------HRAKSDGFPTILFFPAGNKSF 245 (312)
Q Consensus 177 ~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------~~~~i~~~Pt~~~~~~g~~~~ 245 (312)
++.-|++||.+.|+.|..+.|.+..++..+.- .+..+.+|....+. .++++..+|++++...+....
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 45679999999999999999999999999854 35555555432211 368999999999996654421
Q ss_pred CceeeccCcCHHHHHHHHHhcC
Q 021468 246 DPINVDVDRTVVALYKFLKKNA 267 (312)
Q Consensus 246 ~~~~y~g~~~~~~l~~fi~~~~ 267 (312)
.|+ -.|.++.++|.+-|...+
T Consensus 221 ~pv-~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 221 RPL-SYGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEE-eeccCCHHHHHHHHHHHH
Confidence 333 347889999987776553
No 232
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.64 E-value=0.00033 Score=52.08 Aligned_cols=102 Identities=16% Similarity=0.125 Sum_probs=74.4
Q ss_pred eEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHH---hcCCCcEEEEEEeCCCccc--ccCCCCC--Cc
Q 021468 161 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH---LRGVDSIVIAKMDGTTNEH--HRAKSDG--FP 233 (312)
Q Consensus 161 v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~---~~~~~~v~~~~vd~~~~~~--~~~~i~~--~P 233 (312)
|+.++.+++.... ..+.+..++|++ -..-..+...+..+|+. +++ .+.|+.+|.+.... ..|++.. +|
T Consensus 1 ~~e~t~e~~~~~~-~~~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~kg--ki~Fv~~d~~~~~~~~~~fgl~~~~~P 75 (111)
T cd03072 1 VREITFENAEELT-EEGLPFLILFHD--KDDLESLKEFKQAVARQLISEKG--AINFLTADGDKFRHPLLHLGKTPADLP 75 (111)
T ss_pred CcccccccHHHHh-cCCCCeEEEEec--chHHHHHHHHHHHHHHHHHhcCc--eEEEEEEechHhhhHHHHcCCCHhHCC
Confidence 4567788887754 455555555552 23346788899999999 988 69999999888754 7788886 89
Q ss_pred eEEEEeCCCcccCceeeccCcCHHHHHHHHHhcCC
Q 021468 234 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 268 (312)
Q Consensus 234 t~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 268 (312)
.+.+....... +...+.+..+.+.|.+|+++.+.
T Consensus 76 ~i~i~~~~~~~-Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 76 VIAIDSFRHMY-LFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEEcchhcC-cCCCCccccCHHHHHHHHHHHhc
Confidence 99998754321 11126678999999999998754
No 233
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.63 E-value=0.00013 Score=54.45 Aligned_cols=61 Identities=16% Similarity=0.188 Sum_probs=46.5
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEE-eCCCCccccchhhhhCCCCCCCcEE
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYV-QMDNEDVGKPVSEYFGITGEAPKVL 110 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~v-d~~~~~~~~~l~~~~~v~~~~~P~~ 110 (312)
.+++.++.||++| +.|+...|.+.++++++.+.+.++.+ |.+.+. ...+++++++..+ |++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~-~~~~~~~~~~~~~--p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAE-HQRFLKKHGLEAF--PYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHH-HHHHHHHhCCCCC--cEE
Confidence 3668888999999 99999999999999998776666655 222222 5678888888766 765
No 234
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.63 E-value=0.00018 Score=56.17 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=52.4
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC--------eEEEEEEeCCCCc-------------c---------ccc
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--------KLIFVYVQMDNED-------------V---------GKP 95 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~--------~i~f~~vd~~~~~-------------~---------~~~ 95 (312)
+++..+|.|+++| ++|++.+|.+.+++.++++ .+.++.|+.+... | ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4568888999999 9999999999998887653 3788888866421 0 124
Q ss_pred hhhhhCCCCCCCcEEEEEcCCC
Q 021468 96 VSEYFGITGEAPKVLAYTGNDD 117 (312)
Q Consensus 96 l~~~~~v~~~~~P~~~~~~~~~ 117 (312)
+...|++.+. |+.++++.++
T Consensus 104 l~~~y~v~~i--Pt~vlId~~G 123 (146)
T cd03008 104 LEAQFSVEEL--PTVVVLKPDG 123 (146)
T ss_pred HHHHcCCCCC--CEEEEECCCC
Confidence 6678888877 8888887654
No 235
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.00041 Score=50.85 Aligned_cols=73 Identities=21% Similarity=0.413 Sum_probs=53.1
Q ss_pred ccchhhhhc--CCCcEEEEEEc--------CCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc---------ccC
Q 021468 167 NNFDEIVLD--ESKDVLLEIYA--------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------HRA 227 (312)
Q Consensus 167 ~~f~~~i~~--~~k~~lV~f~~--------~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------~~~ 227 (312)
++|.+.+.+ +++.++|+|++ +||+.|....|.+.+.-+.... ++.|+.+++..-+. ...
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCCCCccccCC
Confidence 345554422 34558888885 7999999999999998886655 68888888876443 223
Q ss_pred CC-CCCceEEEEeCC
Q 021468 228 KS-DGFPTILFFPAG 241 (312)
Q Consensus 228 ~i-~~~Pt~~~~~~g 241 (312)
++ +++||++=|.++
T Consensus 91 ~~lt~vPTLlrw~~~ 105 (128)
T KOG3425|consen 91 GILTAVPTLLRWKRQ 105 (128)
T ss_pred CceeecceeeEEcCc
Confidence 44 889999999853
No 236
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.62 E-value=0.0014 Score=50.24 Aligned_cols=109 Identities=8% Similarity=0.110 Sum_probs=76.1
Q ss_pred CeEEEeCccchhhhhcCCCcEEEEEEcC--CChh-h-hcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCC--C
Q 021468 160 DVKIVVGNNFDEIVLDESKDVLLEIYAP--WCGH-C-QAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSD--G 231 (312)
Q Consensus 160 ~v~~l~~~~f~~~i~~~~k~~lV~f~~~--~C~~-C-~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~--~ 231 (312)
.|.+|+..++.+..-...+.-+|.|.-. .|.. + ..+...+.++|+.++++ .+.|+.+|.+.... +.|++. .
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk-~i~Fv~vd~~~~~~~~~~fgl~~~~ 81 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK-PWGWLWTEAGAQLDLEEALNIGGFG 81 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC-cEEEEEEeCcccHHHHHHcCCCccC
Confidence 4667777655443333344455555432 1222 2 46678899999999983 28999999998765 778885 5
Q ss_pred CceEEEEeCCCcccCceeeccCcCHHHHHHHHHhcCCCCc
Q 021468 232 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 271 (312)
Q Consensus 232 ~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~ 271 (312)
+|+++++...+. +...+.|.++.++|.+|+++.+.-..
T Consensus 82 ~P~v~i~~~~~~--KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 82 YPAMVAINFRKM--KFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCEEEEEecccC--ccccccCccCHHHHHHHHHHHHcCCc
Confidence 999999976543 22237799999999999999987554
No 237
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.58 E-value=9.5e-05 Score=51.82 Aligned_cols=57 Identities=16% Similarity=0.332 Sum_probs=40.7
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-------ccCCCCCCceEEEEeCCCc
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------HRAKSDGFPTILFFPAGNK 243 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------~~~~i~~~Pt~~~~~~g~~ 243 (312)
++.|+++||++|..+.+.+.+++ +.. .+.+..+|.+.+.. ...++.++|+++ .+|..
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEE
Confidence 57899999999999999999886 222 36777777654332 345778999984 35543
No 238
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.57 E-value=0.00037 Score=50.33 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=64.7
Q ss_pred ccccccCCCccEEEEEeeCCchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCce
Q 021468 41 APSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKK 120 (312)
Q Consensus 41 ~~~~~~~~~~~~i~f~~~~~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~ 120 (312)
+..++.....++|.||..+ +......|.++|..+++.+.|+.+.- ..+.+.+++. .|.+.+++.....+
T Consensus 10 l~~~~~~~~~~vvg~f~~~--~~~~~~~f~~~A~~~r~~~~F~~~~~------~~~~~~~~~~---~~~i~l~~~~~~~~ 78 (97)
T cd02981 10 LEKFLDKDDVVVVGFFKDE--ESEEYKTFEKVAESLRDDYGFGHTSD------KEVAKKLKVK---PGSVVLFKPFEEEP 78 (97)
T ss_pred HHHHhccCCeEEEEEECCC--CcHHHHHHHHHHHhcccCCeEEEECh------HHHHHHcCCC---CCceEEeCCcccCC
Confidence 4445667767777788775 33788999999999988799988773 2567777763 36666776654456
Q ss_pred eccCCCCCHHHHHHHHHH
Q 021468 121 HILDGELTLDKIKTFGED 138 (312)
Q Consensus 121 ~~~~g~~~~~~i~~fi~~ 138 (312)
..|.|..+.++|.+||..
T Consensus 79 ~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 79 VEYDGEFTEESLVEFIKD 96 (97)
T ss_pred ccCCCCCCHHHHHHHHHh
Confidence 678999999999999875
No 239
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.56 E-value=4e-05 Score=62.91 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=84.1
Q ss_pred ceEEeCCCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCccccchhhhhCCCCCCCcE
Q 021468 32 LVTIFTRENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 109 (312)
Q Consensus 32 ~v~~lt~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~ 109 (312)
.+..++.+|+..+.+. .|+++|+++| +.|..+.|+|...|.--.+ .|.+++||.+. |+.|.-+|=+... |+
T Consensus 25 ~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~---npgLsGRF~vtaL--pt 97 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTT---NPGLSGRFLVTAL--PT 97 (248)
T ss_pred eeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEe---ccccceeeEEEec--ce
Confidence 7889999999988775 8999999999 9999999999999887666 49999999998 7799999988877 88
Q ss_pred EEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021468 110 LAYTGNDDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 110 ~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
|.=...|. -..|.|.++.+++..|+..-
T Consensus 98 IYHvkDGe--FrrysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 98 IYHVKDGE--FRRYSGARDKNDFISFEEHR 125 (248)
T ss_pred EEEeeccc--cccccCcccchhHHHHHHhh
Confidence 75444443 44679999999999999874
No 240
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.52 E-value=0.00021 Score=55.38 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=34.8
Q ss_pred CCcEEEEEE-cCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCC
Q 021468 177 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 220 (312)
Q Consensus 177 ~k~~lV~f~-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~ 220 (312)
++.++|+|| +.||+.|....+.+.++...+... ++.++.+..+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-~~~vv~is~d 66 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-GAVVIGVSPD 66 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 788999999 589999999999999999988753 4666666544
No 241
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.52 E-value=0.00011 Score=56.15 Aligned_cols=66 Identities=21% Similarity=0.422 Sum_probs=40.4
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc---CCCCCCceEEEEeCC-Ccc
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR---AKSDGFPTILFFPAG-NKS 244 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~---~~i~~~Pt~~~~~~g-~~~ 244 (312)
..+..++.|..+||+.|....|.+.+++....+ +.+-.+..+.+.. .+ .+...+|+++++.++ +.+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~---i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~l 111 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPN---IEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKEL 111 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT---EEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC---CeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEe
Confidence 445688889999999999999999999998543 5555455444443 32 467899999999654 443
No 242
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00095 Score=51.42 Aligned_cols=88 Identities=17% Similarity=0.272 Sum_probs=61.6
Q ss_pred hhcCCCcEEEEEEcCCChhhhcchHHH---HHHHHHhcCCCcEEEEEEeCCCccc------------------ccCCCCC
Q 021468 173 VLDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH------------------HRAKSDG 231 (312)
Q Consensus 173 i~~~~k~~lV~f~~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~------------------~~~~i~~ 231 (312)
+...++..+++|-++.|..|..+...+ .++-..+.. ++.++.++.+.... +.|++++
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrs 115 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRS 115 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhcccc
Confidence 445678899999999999999988765 344455555 67777777654221 4579999
Q ss_pred CceEEEEeC-CCcccCceeeccCcCHHHHHHHHHh
Q 021468 232 FPTILFFPA-GNKSFDPINVDVDRTVVALYKFLKK 265 (312)
Q Consensus 232 ~Pt~~~~~~-g~~~~~~~~y~g~~~~~~l~~fi~~ 265 (312)
+|+++||.. |+.+ ....|-+..+++..-++-
T Consensus 116 tPtfvFfdk~Gk~I---l~lPGY~ppe~Fl~vlkY 147 (182)
T COG2143 116 TPTFVFFDKTGKTI---LELPGYMPPEQFLAVLKY 147 (182)
T ss_pred CceEEEEcCCCCEE---EecCCCCCHHHHHHHHHH
Confidence 999999965 4443 255677777766554443
No 243
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.49 E-value=0.0006 Score=51.08 Aligned_cols=90 Identities=8% Similarity=-0.023 Sum_probs=64.7
Q ss_pred hcCCCcEEEEEEcC----CChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCCCceEEEEe--CCCc
Q 021468 174 LDESKDVLLEIYAP----WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFP--AGNK 243 (312)
Q Consensus 174 ~~~~k~~lV~f~~~----~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----~~~~i~~~Pt~~~~~--~g~~ 243 (312)
..+.|.++|++|++ ||..|+.... =.++.+-+.. ++.+...|+...+. ..+++.++|++.++. +++.
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~ 90 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM 90 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence 45679999999999 8888865431 1334444544 68888899987765 468999999999983 2222
Q ss_pred ccCceeeccCcCHHHHHHHHHhcC
Q 021468 244 SFDPINVDVDRTVVALYKFLKKNA 267 (312)
Q Consensus 244 ~~~~~~y~g~~~~~~l~~fi~~~~ 267 (312)
. -.-+..|..+.++|+..|+...
T Consensus 91 ~-vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 91 T-IVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred E-EEEEEeCCCCHHHHHHHHHHHH
Confidence 1 1236889999999999887653
No 244
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.47 E-value=0.00028 Score=56.33 Aligned_cols=104 Identities=11% Similarity=0.028 Sum_probs=81.8
Q ss_pred CCCceEEeC-CCcccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCC
Q 021468 29 KLPLVTIFT-RENAPSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA 106 (312)
Q Consensus 29 ~~~~v~~lt-~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~ 106 (312)
-...+.++. ...|-....++..+++.||.+. ..|+-+...|+.||..+-+ ..|+.||+.+ .|-|+.+++|.-.
T Consensus 64 GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~---~PFlv~kL~IkVL- 138 (211)
T KOG1672|consen 64 GHGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEK---APFLVTKLNIKVL- 138 (211)
T ss_pred CCceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEeccc---CceeeeeeeeeEe-
Confidence 345666666 4466667777888899999999 9999999999999999999 8999999998 6699999999988
Q ss_pred CcEEEEEcCCCCceec--cC--C---CCCHHHHHHHHHH
Q 021468 107 PKVLAYTGNDDAKKHI--LD--G---ELTLDKIKTFGED 138 (312)
Q Consensus 107 ~P~~~~~~~~~~~~~~--~~--g---~~~~~~i~~fi~~ 138 (312)
|++++|.+|...-+. |. | +.+.+.|..-+..
T Consensus 139 -P~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~ 176 (211)
T KOG1672|consen 139 -PTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAK 176 (211)
T ss_pred -eeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhh
Confidence 999999988733221 21 2 3667766666555
No 245
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.39 E-value=0.0023 Score=51.47 Aligned_cols=96 Identities=11% Similarity=0.082 Sum_probs=70.8
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCC------c--------------------cccchhh
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE------D--------------------VGKPVSE 98 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~------~--------------------~~~~l~~ 98 (312)
.+..++++||..| +.|....+.+.++..+|.+ .+.|+.|..+.. . ....+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 4557788899999 9999999999999999974 588888877541 0 1235567
Q ss_pred hhCCCCCCCcEEEEEcCCCCceecc---------CCCCCHHHHHHHHHHHhcCCC
Q 021468 99 YFGITGEAPKVLAYTGNDDAKKHIL---------DGELTLDKIKTFGEDFLEGKL 144 (312)
Q Consensus 99 ~~~v~~~~~P~~~~~~~~~~~~~~~---------~g~~~~~~i~~fi~~~l~~~~ 144 (312)
.||+... |.+++++.++...+.. .+..+.+.+.+-|...+.|.-
T Consensus 104 ~~~v~~~--P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 104 AYGAACT--PDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HcCCCcC--CcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 8889877 8888887665332221 123567899999999998754
No 246
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.38 E-value=0.0012 Score=50.26 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=53.4
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCC---Cc---------------------cccchhhhh
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDN---ED---------------------VGKPVSEYF 100 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~---~~---------------------~~~~l~~~~ 100 (312)
.++..+|.||+.| +.|...+|.+.++.++|++ .+.++.|.... +. ....+.+.|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 4567888899999 9999999999999999985 47777775421 00 023455667
Q ss_pred CCCCCCCcEEEEEcCCCCceeccCC
Q 021468 101 GITGEAPKVLAYTGNDDAKKHILDG 125 (312)
Q Consensus 101 ~v~~~~~P~~~~~~~~~~~~~~~~g 125 (312)
++.+. |+.++++.++...+.+.|
T Consensus 102 ~v~~~--P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 102 GNQYW--PALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CCCcC--CeEEEECCCCcEEEEEec
Confidence 77766 777777655444444333
No 247
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.38 E-value=0.00059 Score=48.22 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=52.0
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCC--CCCCceEEEEeCCCcccCceeecc
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAK--SDGFPTILFFPAGNKSFDPINVDV 252 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~--i~~~Pt~~~~~~g~~~~~~~~y~g 252 (312)
+++|..+||++|..+...|.++..... .+.+..+|++.... ...+ ..++|.+++ +|+.+ |
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i-------g 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV-------G 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe-------c
Confidence 678999999999999998888765433 25666677764321 2223 368999853 45332 2
Q ss_pred CcCHHHHHHHHHhcCCCC
Q 021468 253 DRTVVALYKFLKKNASIP 270 (312)
Q Consensus 253 ~~~~~~l~~fi~~~~~~~ 270 (312)
..++|.++++++.+++
T Consensus 70 --G~~dl~~~~~~~~~~~ 85 (86)
T TIGR02183 70 --GCTDFEQLVKENFDIE 85 (86)
T ss_pred --CHHHHHHHHHhccccc
Confidence 3589999999886643
No 248
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.38 E-value=0.0013 Score=54.46 Aligned_cols=94 Identities=7% Similarity=-0.091 Sum_probs=65.3
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCe-EEEEEEeCCC--------CccccchhhhhCCCCC-----------
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDN--------EDVGKPVSEYFGITGE----------- 105 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~-i~f~~vd~~~--------~~~~~~l~~~~~v~~~----------- 105 (312)
.++.++|.|+++| +.|...+|.+.++..+|.++ +.|+.|+|+. ....+.+++++|+. +
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~-fpvl~d~~v~g~ 116 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK-YNFFEPIEVNGE 116 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCC-ceeeeeeeccCC
Confidence 4567788899999 99999999999999999864 8888888742 11144556666652 1
Q ss_pred ------------------------CC---cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021468 106 ------------------------AP---KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 141 (312)
Q Consensus 106 ------------------------~~---P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~ 141 (312)
.. |+.++++.++.....+.|..+.+.|.+.|.+.++
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 00 1233444443344556777888899999998876
No 249
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.36 E-value=0.0014 Score=55.48 Aligned_cols=95 Identities=6% Similarity=-0.100 Sum_probs=65.8
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCe-EEEEEEeCCCC--------ccccchh-hhhCCCC-----------
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE--------DVGKPVS-EYFGITG----------- 104 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~-i~f~~vd~~~~--------~~~~~l~-~~~~v~~----------- 104 (312)
.++.++|.||+.| +.|....|.|.++.++|+++ +.++.|+|+.. .....++ +++|+.-
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 4567788899999 99999999999999999864 88888887420 0012222 2333210
Q ss_pred ---------------------CCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhc
Q 021468 105 ---------------------EAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 141 (312)
Q Consensus 105 ---------------------~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~ 141 (312)
...|+.++++.++.....+.|..+.+.|.+.|++.++
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 0015555666555556677888999999999998875
No 250
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.32 E-value=0.0013 Score=53.77 Aligned_cols=89 Identities=11% Similarity=0.086 Sum_probs=58.0
Q ss_pred CCCcEEEEEE-cCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc-------------------------c--ccC
Q 021468 176 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-------------------------H--HRA 227 (312)
Q Consensus 176 ~~k~~lV~f~-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~-------------------------~--~~~ 227 (312)
.++.++|+|| +.||+.|....+.|.++..+|.+. ++.+..|+.+... . ..|
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~ 108 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNF 108 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHh
Confidence 4678999999 999999999999999999998753 3445445443210 0 234
Q ss_pred CCC------CCceEEEEeCCCcccCceee-cc--CcCHHHHHHHHHhc
Q 021468 228 KSD------GFPTILFFPAGNKSFDPINV-DV--DRTVVALYKFLKKN 266 (312)
Q Consensus 228 ~i~------~~Pt~~~~~~g~~~~~~~~y-~g--~~~~~~l~~fi~~~ 266 (312)
++. ..|+.+++.....+ ..+.+ .. ..+.+++++.|+..
T Consensus 109 gv~~~~~g~~~p~tfiID~~G~I-~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 109 GVLIEEAGLADRGTFVIDPEGVI-QAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CCcccCCCceeeEEEEECCCCEE-EEEEEeCCCCCCCHHHHHHHHHHh
Confidence 554 35888888543333 22221 11 45788888877544
No 251
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.28 E-value=0.00099 Score=49.91 Aligned_cols=92 Identities=13% Similarity=0.069 Sum_probs=68.0
Q ss_pred cCCCccEEEEEee----C-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCC---
Q 021468 46 ESPIKNQLLLFAV----S-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD--- 117 (312)
Q Consensus 46 ~~~~~~~i~f~~~----~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~--- 117 (312)
+.++..+|+|+++ | ..|+..... .++.+.++..+.+...|+...+ +..++..+++..+ |+++++....
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~fv~w~~dv~~~e-g~~la~~l~~~~~--P~~~~l~~~~~~~ 90 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTRMLFWACSVAKPE-GYRVSQALRERTY--PFLAMIMLKDNRM 90 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcCEEEEEEecCChH-HHHHHHHhCCCCC--CEEEEEEecCCce
Confidence 4566777889988 4 555444321 4466666777999999998876 7899999999999 9988884322
Q ss_pred CceeccCCCCCHHHHHHHHHHHhc
Q 021468 118 AKKHILDGELTLDKIKTFGEDFLE 141 (312)
Q Consensus 118 ~~~~~~~g~~~~~~i~~fi~~~l~ 141 (312)
.......|.+++++|...+...+.
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHh
Confidence 123456899999999999988765
No 252
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.25 E-value=0.00069 Score=52.55 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=38.5
Q ss_pred CCCcEEEEEEcCCChh-hhcchHHHHHHHHHhcCCC--cEEEEEEeCCC
Q 021468 176 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGVD--SIVIAKMDGTT 221 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~-C~~~~~~~~~la~~~~~~~--~v~~~~vd~~~ 221 (312)
.++.++|.||++||++ |....+.+.++...+.... ++.+..+..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4688999999999998 9999999999999997642 47777777654
No 253
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.20 E-value=0.0024 Score=47.45 Aligned_cols=95 Identities=19% Similarity=0.143 Sum_probs=66.2
Q ss_pred EeCccchhhhhcCCCcEEEEEE----cCCChhhhcchHHHHHHHHHhc-CCCcEEEEEEeCCCccc--ccCCCCC----C
Q 021468 164 VVGNNFDEIVLDESKDVLLEIY----APWCGHCQAFEPTYNKLAKHLR-GVDSIVIAKMDGTTNEH--HRAKSDG----F 232 (312)
Q Consensus 164 l~~~~f~~~i~~~~k~~lV~f~----~~~C~~C~~~~~~~~~la~~~~-~~~~v~~~~vd~~~~~~--~~~~i~~----~ 232 (312)
++.++..... ..+.+|.|+ +..-..-..+...+.++|+.++ + .+.|+.+|.+.... +.|++.. +
T Consensus 4 ~~~en~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g--ki~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 4 RTKDNRAQFT---KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR--KLNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred eccchHHHhc---cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC--eEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 4555655543 334455544 2233445678889999999999 6 59999999887654 6788873 9
Q ss_pred ceEEEEeCCCcccCceeeccCc-CHHHHHHHHHhc
Q 021468 233 PTILFFPAGNKSFDPINVDVDR-TVVALYKFLKKN 266 (312)
Q Consensus 233 Pt~~~~~~g~~~~~~~~y~g~~-~~~~l~~fi~~~ 266 (312)
|++.++...... . .+.+.. +.++|.+|+++.
T Consensus 79 P~~~i~~~~~~K--Y-~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKGKK--Y-VMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCCCc--c-CCCcccCCHHHHHHHHHHh
Confidence 999998754321 1 356777 999999999864
No 254
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.18 E-value=0.0011 Score=52.45 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=35.3
Q ss_pred CCCcEEEEEEcC-CChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021468 176 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 221 (312)
Q Consensus 176 ~~k~~lV~f~~~-~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 221 (312)
.++.++|.||+. ||+.|....+.+.++...+++. ++.++.|+.+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d~ 74 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTDK 74 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 468899999975 6888999999999999988764 46666666543
No 255
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.15 E-value=0.00084 Score=62.77 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=77.8
Q ss_pred EeCCC-cccccccCCC--ccEEEEEeeC-CchhhHHHHH---HHHHHHcCCeEEEEEEeCCCC-ccccchhhhhCCCCCC
Q 021468 35 IFTRE-NAPSVFESPI--KNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNE-DVGKPVSEYFGITGEA 106 (312)
Q Consensus 35 ~lt~~-~~~~~~~~~~--~~~i~f~~~~-~~c~~~~~~~---~~la~~~~~~i~f~~vd~~~~-~~~~~l~~~~~v~~~~ 106 (312)
.+++. .+++...+++ ++++-||++| -.|+...+.. .+++.++.+ +....+|.++. +.++++.++||+-+.
T Consensus 458 ~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~-~vlLqaDvT~~~p~~~~lLk~~~~~G~- 535 (569)
T COG4232 458 PISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD-VVLLQADVTANDPAITALLKRLGVFGV- 535 (569)
T ss_pred ccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC-eEEEEeeecCCCHHHHHHHHHcCCCCC-
Confidence 44454 5566666666 7778899999 9999987744 244555566 89999998774 235778899999877
Q ss_pred CcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021468 107 PKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 107 ~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
|++++|+.+...+....|-++.+.+.+++++.
T Consensus 536 -P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 536 -PTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred -CEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999996655555588999999999999875
No 256
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.13 E-value=0.0011 Score=51.54 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=35.7
Q ss_pred CCCcEEEEEEcCC-ChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021468 176 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 221 (312)
Q Consensus 176 ~~k~~lV~f~~~~-C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 221 (312)
.++.++|.||+.| |++|+...+.+.++..++. ++.++.++.+.
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~ 68 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADL 68 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCC
Confidence 4688999999998 6999999999999999975 36677777654
No 257
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.13 E-value=0.0011 Score=53.24 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=35.5
Q ss_pred CCCcEEEEEEcCC-ChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021468 176 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 221 (312)
Q Consensus 176 ~~k~~lV~f~~~~-C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 221 (312)
.++.++|.||++| |++|....+.|.+++.++. ++.++.++.+.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~ 86 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADL 86 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCC
Confidence 4678999999999 9999999999999999884 36666666654
No 258
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.13 E-value=0.0037 Score=42.96 Aligned_cols=71 Identities=18% Similarity=0.348 Sum_probs=53.4
Q ss_pred EEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCC-CCCHHH
Q 021468 54 LLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG-ELTLDK 131 (312)
Q Consensus 54 ~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g-~~~~~~ 131 (312)
.+++++ +.|..+...+.+++..+ + +.+-.+|..+ .+.+ .+|||.+. |++++ + | ...+.| ..+.+.
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-~-i~~ei~~~~~---~~~~-~~ygv~~v--PalvI-n-g---~~~~~G~~p~~~e 70 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-G-IEVEIIDIED---FEEI-EKYGVMSV--PALVI-N-G---KVVFVGRVPSKEE 70 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-T-EEEEEEETTT---HHHH-HHTT-SSS--SEEEE-T-T---EEEEESS--HHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-C-CeEEEEEccC---HHHH-HHcCCCCC--CEEEE-C-C---EEEEEecCCCHHH
Confidence 347788 99999999999999999 4 7777777744 4566 99999988 99955 2 2 346678 678888
Q ss_pred HHHHHH
Q 021468 132 IKTFGE 137 (312)
Q Consensus 132 i~~fi~ 137 (312)
|..|++
T Consensus 71 l~~~l~ 76 (76)
T PF13192_consen 71 LKELLE 76 (76)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 888874
No 259
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.12 E-value=0.0015 Score=51.05 Aligned_cols=81 Identities=19% Similarity=0.144 Sum_probs=58.8
Q ss_pred cCCCccEEEEEee-C-CchhhHHHHHHHHHHHcCCe-EEEEEEeCCCCc------------------cccchhhhhCCC-
Q 021468 46 ESPIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED------------------VGKPVSEYFGIT- 103 (312)
Q Consensus 46 ~~~~~~~i~f~~~-~-~~c~~~~~~~~~la~~~~~~-i~f~~vd~~~~~------------------~~~~l~~~~~v~- 103 (312)
-.++..+|.||.. | ++|...+|.+.++++.|+++ +.++.|..+... ....+.+.||+.
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 3566788889999 9 99999999999999997754 666666644321 134677889987
Q ss_pred --------CCCCcEEEEEcCCCCceeccCCCCC
Q 021468 104 --------GEAPKVLAYTGNDDAKKHILDGELT 128 (312)
Q Consensus 104 --------~~~~P~~~~~~~~~~~~~~~~g~~~ 128 (312)
++ |++++++.++...+...|..+
T Consensus 106 ~~~~~~~~~~--P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGI--PTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSS--SEEEEEETTSBEEEEEESSBT
T ss_pred ccccccCCee--cEEEEEECCCEEEEEEeCCCC
Confidence 67 888777777655555555443
No 260
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.11 E-value=0.001 Score=54.04 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=37.4
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 221 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 221 (312)
.++++||.|||+||+.|.. .+.|.++.++|+.. ++.+..+.|..
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~nq 67 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCNQ 67 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeeccc
Confidence 4789999999999999975 78999999999864 58888888853
No 261
>PLN02412 probable glutathione peroxidase
Probab=97.10 E-value=0.0051 Score=49.31 Aligned_cols=42 Identities=5% Similarity=-0.017 Sum_probs=36.3
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCe-EEEEEEeCC
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD 88 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~-i~f~~vd~~ 88 (312)
.++..+|.||+.| +.|....|.|.++.++|.+. +.++.|.++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 4567778899999 99999999999999999864 888888875
No 262
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.09 E-value=0.0047 Score=50.61 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=59.9
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEe-------------CC--CCccccchhhhhCCCCCCCcEE
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQ-------------MD--NEDVGKPVSEYFGITGEAPKVL 110 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd-------------~~--~~~~~~~l~~~~~v~~~~~P~~ 110 (312)
.+++.++.||++| +.|+...|.+.++.+++...+.++..| .+ .......+.+.||+... |+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~--P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKI--PYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCcc--ceE
Confidence 5567888899999 999999999999988765444444321 00 00012366778888877 887
Q ss_pred EEEcCCCCceeccCCC-CCHHHHHHHHHHHhc
Q 021468 111 AYTGNDDAKKHILDGE-LTLDKIKTFGEDFLE 141 (312)
Q Consensus 111 ~~~~~~~~~~~~~~g~-~~~~~i~~fi~~~l~ 141 (312)
++++.++.. .+.|. .+.+.+.+.++..-.
T Consensus 151 ~lID~~G~I--~~~g~~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 151 VLLDQDGKI--RAKGLTNTREHLESLLEADRE 180 (189)
T ss_pred EEECCCCeE--EEccCCCCHHHHHHHHHHHHc
Confidence 777765423 33444 466778888776533
No 263
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.09 E-value=0.0015 Score=45.29 Aligned_cols=68 Identities=12% Similarity=0.209 Sum_probs=45.5
Q ss_pred CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCCCceEEEEeCCCcccCceeec
Q 021468 177 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGNKSFDPINVD 251 (312)
Q Consensus 177 ~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~i~~~Pt~~~~~~g~~~~~~~~y~ 251 (312)
.+..+++|+.+||++|......|.+. ++.+-.+|++.... ...+..++|.+++ +|..+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i------- 68 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI------- 68 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE-------
Confidence 45568899999999999998888643 35555677766533 2346788999854 55432
Q ss_pred cCcCHHHHHHHH
Q 021468 252 VDRTVVALYKFL 263 (312)
Q Consensus 252 g~~~~~~l~~fi 263 (312)
| ..++|.+||
T Consensus 69 g--G~~~l~~~l 78 (79)
T TIGR02190 69 G--GSDELEAYL 78 (79)
T ss_pred c--CHHHHHHHh
Confidence 2 246666665
No 264
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.05 E-value=0.0014 Score=51.25 Aligned_cols=47 Identities=15% Similarity=0.272 Sum_probs=36.1
Q ss_pred CCcE-EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 021468 177 SKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 224 (312)
Q Consensus 177 ~k~~-lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~ 224 (312)
++.+ |++|+++||+.|+...+.+.++..++... ++.++.|+.+....
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~-~v~vv~V~~~~~~~ 70 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL-GVELVAVGPESPEK 70 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc-CeEEEEEeCCCHHH
Confidence 3444 55556999999999999999999999753 57888888765543
No 265
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.04 E-value=0.0025 Score=41.07 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=47.0
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchh---hhhCCCCCCCcEEEEEcCC
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS---EYFGITGEAPKVLAYTGND 116 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~---~~~~v~~~~~P~~~~~~~~ 116 (312)
+++|+..| +.|..+.+.+.++ ......+.+..++++... ... ..+++... |++++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDP---ALEKELKRYGVGGV--PTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCCh---HHhhHHHhCCCccc--cEEEEEeCC
Confidence 36788888 9999999999999 455556999999998843 443 37788877 999888766
No 266
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.03 E-value=0.0047 Score=51.64 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=59.9
Q ss_pred ccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCC------CccccchhhhhCCCCCCCcEEEEEcCCCCceec
Q 021468 50 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN------EDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI 122 (312)
Q Consensus 50 ~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~------~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~ 122 (312)
.-+++||.+. +.|+.+.|++..++.+|.=.|..+-+|... ...+..+.+.+||..+ |++++...+....+.
T Consensus 122 ~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~--Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 122 YGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVT--PALFLVNPNTKKWYP 199 (215)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcC--CEEEEEECCCCeEEE
Confidence 4577788888 999999999999999995455555555320 0013578899999877 988888776633322
Q ss_pred -cCCCCCHHHHHH
Q 021468 123 -LDGELTLDKIKT 134 (312)
Q Consensus 123 -~~g~~~~~~i~~ 134 (312)
-.|..+.++|.+
T Consensus 200 v~~G~~s~~~L~~ 212 (215)
T PF13728_consen 200 VSQGFMSLDELED 212 (215)
T ss_pred EeeecCCHHHHHH
Confidence 357788888765
No 267
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.00 E-value=0.011 Score=47.55 Aligned_cols=106 Identities=19% Similarity=0.268 Sum_probs=80.9
Q ss_pred CCeEEEeCccchhhhhcC--CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCCCceEE
Q 021468 159 GDVKIVVGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTIL 236 (312)
Q Consensus 159 ~~v~~l~~~~f~~~i~~~--~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~i~~~Pt~~ 236 (312)
+.|..+++.+|...+... +-.|+|+.|...-+.|.-+...++.+|.+|.. ++|+++-.... ..-|--...||++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~---iKFVki~at~c-IpNYPe~nlPTl~ 166 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ---IKFVKIPATTC-IPNYPESNLPTLL 166 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---ceEEecccccc-cCCCcccCCCeEE
Confidence 679999999999988543 35578999999999999999999999999987 78887664432 2455557899999
Q ss_pred EEeCCCcccC---ceeecc-CcCHHHHHHHHHhcCC
Q 021468 237 FFPAGNKSFD---PINVDV-DRTVVALYKFLKKNAS 268 (312)
Q Consensus 237 ~~~~g~~~~~---~~~y~g-~~~~~~l~~fi~~~~~ 268 (312)
+|-.|.-... +..+-| ..+.+++..++-+...
T Consensus 167 VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qaga 202 (240)
T KOG3170|consen 167 VYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAGA 202 (240)
T ss_pred EeecchHHhheehhhhhcCCcCCHHHHHHHHHhccc
Confidence 9988855432 223344 5567889888877753
No 268
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00045 Score=56.61 Aligned_cols=74 Identities=16% Similarity=0.320 Sum_probs=63.2
Q ss_pred cCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeecc
Q 021468 175 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDV 252 (312)
Q Consensus 175 ~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g 252 (312)
+..+..++.||++||..|..|...+..++..++ ++.+++.+.+.... ..+.+...|.+.++..|..+. +..|
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~---~l~~ 88 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVD---RLSG 88 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhh---hhhc
Confidence 467889999999999999999999999999983 58999999888776 678899999999998888875 4555
Q ss_pred Cc
Q 021468 253 DR 254 (312)
Q Consensus 253 ~~ 254 (312)
..
T Consensus 89 ~~ 90 (227)
T KOG0911|consen 89 AD 90 (227)
T ss_pred cC
Confidence 33
No 269
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.98 E-value=0.0014 Score=51.69 Aligned_cols=75 Identities=24% Similarity=0.526 Sum_probs=47.6
Q ss_pred ccchhhhhcCCCcEEEEEEcCCChhhhcchHH-H--HHHHHHhcCCCcEEEEEEeCCCccc--ccC--------CCCCCc
Q 021468 167 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH--HRA--------KSDGFP 233 (312)
Q Consensus 167 ~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~-~--~~la~~~~~~~~v~~~~vd~~~~~~--~~~--------~i~~~P 233 (312)
+.|.. ....+|+++|.++++||..|..|... | .++|..+.. ++.-+++|.++.+. ..| +..++|
T Consensus 28 ea~~~-Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 28 EALEK-AKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp HHHHH-HHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred HHHHH-HHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 33444 34678999999999999999988764 3 456676765 68999999888776 333 677999
Q ss_pred eEEEE-eCCCcc
Q 021468 234 TILFF-PAGNKS 244 (312)
Q Consensus 234 t~~~~-~~g~~~ 244 (312)
+.+|. ++|+.+
T Consensus 105 l~vfltPdg~p~ 116 (163)
T PF03190_consen 105 LTVFLTPDGKPF 116 (163)
T ss_dssp EEEEE-TTS-EE
T ss_pred ceEEECCCCCee
Confidence 98888 556554
No 270
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.97 E-value=0.0042 Score=45.50 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=54.6
Q ss_pred CCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCC-CCccccchhhhhC--CCCCCCcEEEEEcCCCC
Q 021468 48 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD-NEDVGKPVSEYFG--ITGEAPKVLAYTGNDDA 118 (312)
Q Consensus 48 ~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~-~~~~~~~l~~~~~--v~~~~~P~~~~~~~~~~ 118 (312)
+...++.||++| +.|+.+.|.+.++++++...+.|..+|.. . ++.+...++ +..+ |++.++.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~--p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDE---NPDLAAEFGVAVRSI--PTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCC---ChHHHHHHhhhhccC--CeEEEEeCcch
Confidence 445666678999 99999999999999999987999999996 4 568889999 8777 88877666653
No 271
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.95 E-value=0.0022 Score=50.14 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=35.0
Q ss_pred CcEEEEEE-cCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021468 178 KDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 221 (312)
Q Consensus 178 k~~lV~f~-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 221 (312)
+.++|.|| ++||+.|....+.+.++..++... ++.++.++.+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA-GAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC-CCEEEEecCCC
Confidence 77777777 899999999999999999999753 57777776554
No 272
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.89 E-value=0.0069 Score=49.48 Aligned_cols=90 Identities=11% Similarity=0.105 Sum_probs=59.9
Q ss_pred CCCcEEEEEE-cCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc---------------------------cccC
Q 021468 176 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---------------------------HHRA 227 (312)
Q Consensus 176 ~~k~~lV~f~-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~---------------------------~~~~ 227 (312)
.++.++|+|| +.||+.|....+.|.++..+|... ++.+..++.+... ...|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 4678999999 999999999999999999998753 3445545544311 0344
Q ss_pred CC----CCC--ceEEEEeCCCcccCceeec--cCcCHHHHHHHHHhc
Q 021468 228 KS----DGF--PTILFFPAGNKSFDPINVD--VDRTVVALYKFLKKN 266 (312)
Q Consensus 228 ~i----~~~--Pt~~~~~~g~~~~~~~~y~--g~~~~~~l~~fi~~~ 266 (312)
++ .++ |+.+++..+..+-....+. ...+.+++++.|...
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 55 245 9999996444431111232 256889999988655
No 273
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.83 E-value=0.0017 Score=42.30 Aligned_cols=49 Identities=14% Similarity=0.304 Sum_probs=37.6
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--c---c-CCCCCCceEEE
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R-AKSDGFPTILF 237 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~---~-~~i~~~Pt~~~ 237 (312)
+++|+.+||++|......|.+. ++.+..+|++.... + + .+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999988877443 47777788887643 2 2 38899999886
No 274
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.017 Score=44.69 Aligned_cols=96 Identities=8% Similarity=0.113 Sum_probs=68.7
Q ss_pred ccCCCccEEEEEeeC-CchhhHHHHH---HHHHHHcCCeEEEEEEeCCCCcc-------------ccchhhhhCCCCCCC
Q 021468 45 FESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDV-------------GKPVSEYFGITGEAP 107 (312)
Q Consensus 45 ~~~~~~~~i~f~~~~-~~c~~~~~~~---~~la~~~~~~i~f~~vd~~~~~~-------------~~~l~~~~~v~~~~~ 107 (312)
.-.++..+++|-++. ..|.++...+ .++.+-+.+.+.++.++...+.. .++|++.|+|+++
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst-- 116 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST-- 116 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC--
Confidence 345555566666666 9999998766 45667777778888888654320 2478999999999
Q ss_pred cEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcC
Q 021468 108 KVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEG 142 (312)
Q Consensus 108 P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~~ 142 (312)
|++++|++.+..-+...|.+..+++..-+.=...|
T Consensus 117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 117 PTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred ceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 99999988765556668889988877655544333
No 275
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.82 E-value=0.0073 Score=45.97 Aligned_cols=69 Identities=13% Similarity=0.068 Sum_probs=44.7
Q ss_pred cccCCCccEEEEEeeC-CchhhHHHHH---HHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCC
Q 021468 44 VFESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDA 118 (312)
Q Consensus 44 ~~~~~~~~~i~f~~~~-~~c~~~~~~~---~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~ 118 (312)
.-..+++.+|.|+++| ++|+.+...+ .++++.....+..+.++.+..+.+.. ..| .+ .|++++++.+..
T Consensus 19 Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~---~~g-~~--vPtivFld~~g~ 91 (130)
T cd02960 19 AKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS---PDG-QY--VPRIMFVDPSLT 91 (130)
T ss_pred HHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC---ccC-cc--cCeEEEECCCCC
Confidence 4467888899999999 9999998864 34566665445555666543210111 233 33 499999977653
No 276
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.82 E-value=0.013 Score=50.16 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=66.7
Q ss_pred ccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc------cccchhhhhCCCCCCCcEEEEEcCCCCceec
Q 021468 50 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------VGKPVSEYFGITGEAPKVLAYTGNDDAKKHI 122 (312)
Q Consensus 50 ~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~------~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~ 122 (312)
.-+++||... +.|+++.|++..++.+|.=.+..+-+|..... .+..+++++||..+ |++++...+....+.
T Consensus 152 ~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~--Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 152 YGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF--PALYLVNPKSQKMSP 229 (256)
T ss_pred eeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccC--ceEEEEECCCCcEEE
Confidence 4577788888 99999999999999999866666666654211 12457889999887 888887776543333
Q ss_pred c-CCCCCHHHHHHHHHHHhc
Q 021468 123 L-DGELTLDKIKTFGEDFLE 141 (312)
Q Consensus 123 ~-~g~~~~~~i~~fi~~~l~ 141 (312)
. .|.++.++|.+=+...+.
T Consensus 230 v~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 230 LAYGFISQDELKERILNVLT 249 (256)
T ss_pred EeeccCCHHHHHHHHHHHHh
Confidence 2 588999999887777654
No 277
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.80 E-value=0.0022 Score=51.71 Aligned_cols=88 Identities=9% Similarity=0.040 Sum_probs=58.9
Q ss_pred CCCcEEEEEE-cCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------------
Q 021468 176 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------ 224 (312)
Q Consensus 176 ~~k~~lV~f~-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------------ 224 (312)
.++.++|.|| +.||+.|....+.|.++..+|.+. ++.++.|..+....
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 106 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS 106 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence 3588999999 899999999999999999999763 45555565543210
Q ss_pred ccCCCC------CCceEEEEeCCCcccCceeecc----CcCHHHHHHHHHhc
Q 021468 225 HRAKSD------GFPTILFFPAGNKSFDPINVDV----DRTVVALYKFLKKN 266 (312)
Q Consensus 225 ~~~~i~------~~Pt~~~~~~g~~~~~~~~y~g----~~~~~~l~~fi~~~ 266 (312)
..|++. ..|+.+++.....+ .. .+.+ ..+.+++.+.|+..
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I-~~-~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGII-RH-ITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeE-EE-EEecCCCCCCCHHHHHHHHHHh
Confidence 234554 46788888644333 11 2211 34678888888765
No 278
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.77 E-value=0.0069 Score=50.19 Aligned_cols=90 Identities=9% Similarity=0.058 Sum_probs=60.3
Q ss_pred CCcEEE-EEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc--------------------c---------cc
Q 021468 177 SKDVLL-EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--------------------H---------HR 226 (312)
Q Consensus 177 ~k~~lV-~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--------------------~---------~~ 226 (312)
++.++| +|+++||+.|....+.|.++..+|+.. ++.+..++++... . ..
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 555554 689999999999999999999998754 4555555554210 0 23
Q ss_pred CCCC------CCceEEEEeCCCcccCce-eec--cCcCHHHHHHHHHhcCC
Q 021468 227 AKSD------GFPTILFFPAGNKSFDPI-NVD--VDRTVVALYKFLKKNAS 268 (312)
Q Consensus 227 ~~i~------~~Pt~~~~~~g~~~~~~~-~y~--g~~~~~~l~~fi~~~~~ 268 (312)
|++. .+|+.+++..+..+ +.+ .|. +.++.+++++.|+....
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I-~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIV-RWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEE-EEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 4553 47999999655454 222 222 36789999999987644
No 279
>PRK15000 peroxidase; Provisional
Probab=96.73 E-value=0.0089 Score=49.44 Aligned_cols=90 Identities=8% Similarity=0.114 Sum_probs=61.5
Q ss_pred CCCcEEEEEEc-CCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc------------------------------
Q 021468 176 ESKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------ 224 (312)
Q Consensus 176 ~~k~~lV~f~~-~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------------------------------ 224 (312)
.++.++|+||+ .||+.|....+.|.++..+|+.. ++.+..++++....
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 46899999999 59999999999999999999864 46666666553110
Q ss_pred ccCCCC------CCceEEEEeCCCcccCceeec--cCcCHHHHHHHHHhc
Q 021468 225 HRAKSD------GFPTILFFPAGNKSFDPINVD--VDRTVVALYKFLKKN 266 (312)
Q Consensus 225 ~~~~i~------~~Pt~~~~~~g~~~~~~~~y~--g~~~~~~l~~fi~~~ 266 (312)
..|++. .+|+.+++.....+.....+. -.++.+++++.|+..
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 124555 578888886443431111221 256889999988654
No 280
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.71 E-value=0.0022 Score=43.13 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=42.2
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccC----CCCCCceEEEEeCCCcccCceeeccCc
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRA----KSDGFPTILFFPAGNKSFDPINVDVDR 254 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~----~i~~~Pt~~~~~~g~~~~~~~~y~g~~ 254 (312)
+++|+++||++|..+...+.+. ++.+..++++.... ..+ ...++|++++ +|. .+.| .
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~------~i~g-~ 64 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE------HLSG-F 64 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE------EEec-C
Confidence 5789999999999988777653 35555666665432 222 5678999976 332 3344 4
Q ss_pred CHHHHHHH
Q 021468 255 TVVALYKF 262 (312)
Q Consensus 255 ~~~~l~~f 262 (312)
+...|.++
T Consensus 65 ~~~~l~~~ 72 (73)
T cd02976 65 RPDKLRAL 72 (73)
T ss_pred CHHHHHhh
Confidence 55566654
No 281
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.70 E-value=0.018 Score=48.96 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=68.0
Q ss_pred ccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc------cccchhhhhCCCCCCCcEEEEEcCCCCceec
Q 021468 50 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED------VGKPVSEYFGITGEAPKVLAYTGNDDAKKHI 122 (312)
Q Consensus 50 ~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~------~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~ 122 (312)
.-+++||... +.|.++.|++..++.+|.=.|..+-+|..... .+....+++||..+ |++++.+.+....+.
T Consensus 145 ~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~--PAl~Lv~~~t~~~~p 222 (248)
T PRK13703 145 YGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYF--PALMLVDPKSGSVRP 222 (248)
T ss_pred ceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCccc--ceEEEEECCCCcEEE
Confidence 4577788888 99999999999999999977777777763321 02246678999888 888888777544333
Q ss_pred c-CCCCCHHHHHHHHHHHhcC
Q 021468 123 L-DGELTLDKIKTFGEDFLEG 142 (312)
Q Consensus 123 ~-~g~~~~~~i~~fi~~~l~~ 142 (312)
. .|.++.++|.+=+.....+
T Consensus 223 v~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 223 LSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred EeeccCCHHHHHHHHHHHHhc
Confidence 3 5889999998887776553
No 282
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.69 E-value=0.0034 Score=48.48 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=37.3
Q ss_pred CCCcEEEEEE-cCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021468 176 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 221 (312)
Q Consensus 176 ~~k~~lV~f~-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 221 (312)
.+++++|.|| +.||+.|....+.+.++..+++.. ++.++.+..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 5788999999 789999999999999999998643 57777777654
No 283
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.68 E-value=0.0082 Score=42.74 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=67.3
Q ss_pred ccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc----ccCCCC----CCc-eEEE
Q 021468 167 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSD----GFP-TILF 237 (312)
Q Consensus 167 ~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----~~~~i~----~~P-t~~~ 237 (312)
.+|.+++ ...++++|+|..+--..- .....+.++|...++ .-.++.|||...+. .++.+. .-| .+.-
T Consensus 10 KdfKKLL-RTr~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG--~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkH 85 (112)
T cd03067 10 KDFKKLL-RTRNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKG--QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKH 85 (112)
T ss_pred HHHHHHH-hhcCcEEEEEecchhhHH-HHHHHHHHHHHHhcC--ceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhc
Confidence 7888866 456778888887654443 334578999999998 46777789997554 556665 334 3677
Q ss_pred EeCCCcccCceeeccCcCHHHHHHHHHh
Q 021468 238 FPAGNKSFDPINVDVDRTVVALYKFLKK 265 (312)
Q Consensus 238 ~~~g~~~~~~~~y~g~~~~~~l~~fi~~ 265 (312)
|++|..-. .|+-..+..+|+.|+++
T Consensus 86 YKdG~fHk---dYdR~~t~kSmv~FlrD 110 (112)
T cd03067 86 YKDGDFHT---EYNRQLTFKSMVAFLRD 110 (112)
T ss_pred ccCCCccc---cccchhhHHHHHHHhhC
Confidence 88998754 89989999999999975
No 284
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.66 E-value=0.0018 Score=45.28 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=47.5
Q ss_pred ccCCCccEEEEEeeC-CchhhHHHHH---HHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEc
Q 021468 45 FESPIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTG 114 (312)
Q Consensus 45 ~~~~~~~~i~f~~~~-~~c~~~~~~~---~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~ 114 (312)
-.++++.+|+|+++| +.|+.+...+ .++...+.+.+.++.+|.+... ......+ .++ |++++++
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~---~~~~~~~-~~~--P~~~~ld 81 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDED---PNAQFDR-QGY--PTFFFLD 81 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHH---HHHHHHH-CSS--SEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCC---hhHHhCC-ccC--CEEEEeC
Confidence 456788899999999 9999998887 5566656777999999997743 2222222 445 9998875
No 285
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.037 Score=47.84 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=86.3
Q ss_pred HHHHHHHHHhcCCCceEEeCCCcccccccCCCcc--EE-EEEeeC-----CchhhHHHHHHHHHHHcC------C--eEE
Q 021468 18 KSTIADFVFSNKLPLVTIFTRENAPSVFESPIKN--QL-LLFAVS-----NDSEKLLPVFEEAAKSFK------G--KLI 81 (312)
Q Consensus 18 ~~~l~~fi~~~~~~~v~~lt~~~~~~~~~~~~~~--~i-~f~~~~-----~~c~~~~~~~~~la~~~~------~--~i~ 81 (312)
++.+...+.-.+...|+.++++.|..++..+-.. +| +|-+.. .-|.++..+|.-+|..+. + ++=
T Consensus 27 s~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklF 106 (331)
T KOG2603|consen 27 SNKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLF 106 (331)
T ss_pred HHHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEE
Confidence 4556666665778899999999999988743222 33 344433 457778888888887765 1 689
Q ss_pred EEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceec---c---CCCCCHHHHHHHHHHHhc
Q 021468 82 FVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI---L---DGELTLDKIKTFGEDFLE 141 (312)
Q Consensus 82 f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~---~---~g~~~~~~i~~fi~~~l~ 141 (312)
|+.||.++ .+.+-+.+++... |.+..|.+..+++-+ + +-...+|++.+|+++...
T Consensus 107 F~~Vd~~e---~p~~Fq~l~ln~~--P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 107 FCMVDYDE---SPQVFQQLNLNNV--PHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred EEEEeccc---cHHHHHHhcccCC--CeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 99999998 6799999999999 999999665533211 1 223459999999999755
No 286
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.63 E-value=0.0035 Score=53.10 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=54.5
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEE--Ee-----------------------------------
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAK--MD----------------------------------- 218 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~--vd----------------------------------- 218 (312)
+++.+++.|..+.|++|+++.+.+.++... ++.+.. +.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~ 180 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL-----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVS 180 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC-----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCC
Confidence 467789999999999999999888776431 122211 11
Q ss_pred ---CCC----ccc--ccCCCCCCceEEEEeCCCcccCceeeccCcCHHHHHHHHHhc
Q 021468 219 ---GTT----NEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 266 (312)
Q Consensus 219 ---~~~----~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~ 266 (312)
|.. +.. .+++|.++|+++ +.+|. .+.|..+.+.|.++|.+.
T Consensus 181 ~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~------~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 181 PASCDVDIADHYALGVQFGVQGTPAIV-LSNGT------LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccccchHHHhHHHHHHcCCccccEEE-EcCCe------EeeCCCCHHHHHHHHHHc
Confidence 100 000 346999999998 66665 347878899999999865
No 287
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.63 E-value=0.01 Score=41.35 Aligned_cols=71 Identities=6% Similarity=0.022 Sum_probs=50.2
Q ss_pred EEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCCCceEEEEeCCCcccCceeeccCc
Q 021468 180 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGNKSFDPINVDVDR 254 (312)
Q Consensus 180 ~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~ 254 (312)
.+++|..+||++|..++..|.+. ++.|-.+|++.... ...+...+|.+++ ++ . ... .+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~--------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~-~-----~~~-Gf 64 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESR--------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD-L-----SWS-GF 64 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC-E-----EEe-cC
Confidence 36789999999999988777542 47777788876653 2346678999865 22 2 223 47
Q ss_pred CHHHHHHHHHhcC
Q 021468 255 TVVALYKFLKKNA 267 (312)
Q Consensus 255 ~~~~l~~fi~~~~ 267 (312)
+.+.|.+.+..+.
T Consensus 65 ~~~~l~~~~~~~~ 77 (81)
T PRK10329 65 RPDMINRLHPAPH 77 (81)
T ss_pred CHHHHHHHHHhhh
Confidence 7899988887764
No 288
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.61 E-value=0.017 Score=45.52 Aligned_cols=41 Identities=5% Similarity=0.001 Sum_probs=35.7
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeC
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQM 87 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~ 87 (312)
.++.++|.|+++| +.|...+|.+.++.++|.+ .+.|+.|+|
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 4556778899999 9999999999999999985 488888886
No 289
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.60 E-value=0.0086 Score=40.24 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=50.6
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCcc-ccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCH
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL 129 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~-~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~ 129 (312)
+.+|+++| +.|+.+.+.|.+. + +.+..+|.+.... ...+++.+|+.+. |++.+. +. . ..| .+.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-----~-i~~~~vdi~~~~~~~~~~~~~~~~~~v--P~~~~~--~~--~--~~g-~~~ 66 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-----G-IAFEEIDVEKDSAAREEVLKVLGQRGV--PVIVIG--HK--I--IVG-FDP 66 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-----C-CeEEEEeccCCHHHHHHHHHHhCCCcc--cEEEEC--CE--E--Eee-CCH
Confidence 45788899 9999999988752 3 7888889876320 1236677999888 999763 32 2 344 678
Q ss_pred HHHHHHHH
Q 021468 130 DKIKTFGE 137 (312)
Q Consensus 130 ~~i~~fi~ 137 (312)
+.|.++++
T Consensus 67 ~~i~~~i~ 74 (74)
T TIGR02196 67 EKLDQLLE 74 (74)
T ss_pred HHHHHHhC
Confidence 88888763
No 290
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.60 E-value=0.0098 Score=43.59 Aligned_cols=88 Identities=19% Similarity=0.238 Sum_probs=60.6
Q ss_pred cccccccCCCccEEEEEeeCCchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcC----
Q 021468 40 NAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN---- 115 (312)
Q Consensus 40 ~~~~~~~~~~~~~i~f~~~~~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~---- 115 (312)
.++.++......+|-||..... .....|.++|..+.+.+.|+..... .+...+++ . |.++++++
T Consensus 10 ~l~~f~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~~------~~~~~~~~--~--~~ivl~~p~~~~ 77 (104)
T cd03069 10 EFEKFLSDDDASVVGFFEDEDS--KLLSEFLKAADTLRESFRFAHTSDK------QLLEKYGY--G--EGVVLFRPPRLS 77 (104)
T ss_pred HHHHHhccCCcEEEEEEcCCCc--hHHHHHHHHHHhhhhcCEEEEEChH------HHHHhcCC--C--CceEEEechhhh
Confidence 3555566666667777766422 5778889999999877899775542 56788888 4 44445522
Q ss_pred --CCCceeccCCCCCHHHHHHHHHHH
Q 021468 116 --DDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 116 --~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
-......|.|..+.+.|.+||...
T Consensus 78 ~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 78 NKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cccCcccccccCcCCHHHHHHHHHhh
Confidence 112345689999999999999863
No 291
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.60 E-value=0.0071 Score=40.95 Aligned_cols=65 Identities=12% Similarity=0.148 Sum_probs=43.5
Q ss_pred EEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-c----cCCCCCCceEEEEeCCCcccCceeeccCc
Q 021468 180 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-H----RAKSDGFPTILFFPAGNKSFDPINVDVDR 254 (312)
Q Consensus 180 ~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-~----~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~ 254 (312)
.+++|..+||+.|...+..|.+. ++.+..+|++.+.. . ..+..++|.++ .+|..+ |
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i-------g-- 62 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI-------G-- 62 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE-------e--
Confidence 36789999999999998877753 35566667766543 1 23677899973 445432 2
Q ss_pred CHHHHHHHH
Q 021468 255 TVVALYKFL 263 (312)
Q Consensus 255 ~~~~l~~fi 263 (312)
..++|.+|+
T Consensus 63 g~~~l~~~l 71 (72)
T cd03029 63 GSDDLEKYF 71 (72)
T ss_pred CHHHHHHHh
Confidence 357777765
No 292
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.58 E-value=0.019 Score=41.82 Aligned_cols=90 Identities=14% Similarity=0.170 Sum_probs=62.5
Q ss_pred Cccccccc-CCCccEEEEEeeCCchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCC
Q 021468 39 ENAPSVFE-SPIKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD 117 (312)
Q Consensus 39 ~~~~~~~~-~~~~~~i~f~~~~~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~ 117 (312)
+.++.++. .....+|-||..... .....|.++|..+...+.|+.... ..+...+++. . |.+.++....
T Consensus 9 ~~~e~~~~~~~~~~Vvg~f~~~~~--~~~~~F~~vA~~~R~d~~F~~~~~------~~~~~~~~~~-~--~~i~l~~~~~ 77 (102)
T cd03066 9 RELQAFENIEDDIKLIGYFKSEDS--EHYKAFEEAAEEFHPYIKFFATFD------SKVAKKLGLK-M--NEVDFYEPFM 77 (102)
T ss_pred HHHHHHhcccCCeEEEEEECCCCC--HHHHHHHHHHHhhhcCCEEEEECc------HHHHHHcCCC-C--CcEEEeCCCC
Confidence 34666776 665666667766522 467789999999987788876543 2566777774 3 6666776533
Q ss_pred Cceecc-CCCCCHHHHHHHHHHH
Q 021468 118 AKKHIL-DGELTLDKIKTFGEDF 139 (312)
Q Consensus 118 ~~~~~~-~g~~~~~~i~~fi~~~ 139 (312)
.....| .|..+.+.|.+||...
T Consensus 78 e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 78 EEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCcccCCCCCCHHHHHHHHHHh
Confidence 344568 7888999999999763
No 293
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=96.57 E-value=0.011 Score=46.52 Aligned_cols=41 Identities=10% Similarity=0.017 Sum_probs=34.7
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCC
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMD 88 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~ 88 (312)
.++.++|.|++.| + |...+|.|.+++++|.+ .+.|+.|.++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 3567788899999 8 99999999999999974 4888888764
No 294
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.51 E-value=0.0035 Score=45.84 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=61.7
Q ss_pred CceEEeCCCcccccccCCCccEEEEEeeC---CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCC
Q 021468 31 PLVTIFTRENAPSVFESPIKNQLLLFAVS---NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP 107 (312)
Q Consensus 31 ~~v~~lt~~~~~~~~~~~~~~~i~f~~~~---~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~ 107 (312)
..+..++.++++..+..+...+++|-.+. .++....=++-+|.+.|.+.+..+.+.-.. .+.|..+||+...
T Consensus 9 ~g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~---e~~L~~r~gv~~~-- 83 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAA---ERALAARFGVRRW-- 83 (107)
T ss_dssp -TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHH---HHHHHHHHT-TSS--
T ss_pred cCCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchh---HHHHHHHhCCccC--
Confidence 35678888899998887655444444443 666777778889999999999888888555 3599999999988
Q ss_pred cEEEEEcCCC
Q 021468 108 KVLAYTGNDD 117 (312)
Q Consensus 108 P~~~~~~~~~ 117 (312)
|++++++.|.
T Consensus 84 PaLvf~R~g~ 93 (107)
T PF07449_consen 84 PALVFFRDGR 93 (107)
T ss_dssp SEEEEEETTE
T ss_pred CeEEEEECCE
Confidence 9999999886
No 295
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.49 E-value=0.0042 Score=43.09 Aligned_cols=68 Identities=13% Similarity=0.264 Sum_probs=44.3
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-------ccCCCCCCceEEEEeCCCcccCceeeccC
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-------HRAKSDGFPTILFFPAGNKSFDPINVDVD 253 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-------~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~ 253 (312)
+++|+++||++|..+...|.++.. .+.+..++...... ...+..++|.+ |.+|..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i--------- 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI--------- 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE---------
Confidence 578999999999999998888754 24566666554421 23467788986 4455432
Q ss_pred cCHHHHHHHHHh
Q 021468 254 RTVVALYKFLKK 265 (312)
Q Consensus 254 ~~~~~l~~fi~~ 265 (312)
...+.+.+..++
T Consensus 65 gg~~~~~~~~~~ 76 (82)
T cd03419 65 GGCDDLMALHKS 76 (82)
T ss_pred cCHHHHHHHHHc
Confidence 234555555544
No 296
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.46 E-value=0.0056 Score=40.91 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=36.8
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCCCCCceEEEEeCCCc
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFPAGNK 243 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~i~~~Pt~~~~~~g~~ 243 (312)
++.|+++||++|+.+...|.+.. +.+..+|+..+.. . ..+...+|+++ .+|..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ 60 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEF 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence 57899999999999988887763 5566677776653 2 23556778764 35543
No 297
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.39 E-value=0.018 Score=42.80 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=69.3
Q ss_pred ccchhhhhc-CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCc
Q 021468 167 NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNK 243 (312)
Q Consensus 167 ~~f~~~i~~-~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~ 243 (312)
...+..+.. ..+.++|-|-..|-+.|..|-..+.+++..+.+ -..++-+|++.-.. +-|++...|++.+|-+++.
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 444555543 457789999999999999999999999999988 47788888886665 6789999999988865543
Q ss_pred c------cCceeecc-CcCHHHHHHHHHhc
Q 021468 244 S------FDPINVDV-DRTVVALYKFLKKN 266 (312)
Q Consensus 244 ~------~~~~~y~g-~~~~~~l~~fi~~~ 266 (312)
. +..-..++ -.+.++++..+.-.
T Consensus 90 mkiD~gtgdn~Kin~~~~~kq~~Idiie~i 119 (142)
T KOG3414|consen 90 MKIDLGTGDNNKINFAFEDKQEFIDIIETI 119 (142)
T ss_pred EEEeeCCCCCceEEEEeccHHHHHHHHHHH
Confidence 2 01112333 22456666666443
No 298
>PTZ00256 glutathione peroxidase; Provisional
Probab=96.31 E-value=0.045 Score=44.56 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=33.6
Q ss_pred CCCccE-EEEEeeC-CchhhHHHHHHHHHHHcCCe-EEEEEEeCC
Q 021468 47 SPIKNQ-LLLFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMD 88 (312)
Q Consensus 47 ~~~~~~-i~f~~~~-~~c~~~~~~~~~la~~~~~~-i~f~~vd~~ 88 (312)
.++.++ ++++++| +.|...+|.|.++.++|.++ +.|+.|+|+
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 344444 4468999 99999999999999999864 888888864
No 299
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.26 E-value=0.029 Score=45.49 Aligned_cols=86 Identities=12% Similarity=0.091 Sum_probs=60.0
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEE------EEEeCCCCc----------------c----------c
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIF------VYVQMDNED----------------V----------G 93 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f------~~vd~~~~~----------------~----------~ 93 (312)
.++..+|-|++.| ++|+.-.|.+..++.+ + +.+ ..||.++.. . .
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~-~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~ 134 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA--K-FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDK 134 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc--C-CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCc
Confidence 4777888899999 9999999999999653 1 333 444443210 0 1
Q ss_pred cchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021468 94 KPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 136 (312)
Q Consensus 94 ~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi 136 (312)
..+...+|+.+. |+++++++..+...+...|..+.+++.+++
T Consensus 135 g~v~~~~gv~~~-P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 135 GAVKNAWQLNSE-DSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred chHHHhcCCCCC-CceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 235578899888 555467777666677778999999888733
No 300
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.25 E-value=0.045 Score=44.04 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=62.2
Q ss_pred CCCccEEEEE-eeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCc-------------------------cccchhh
Q 021468 47 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSE 98 (312)
Q Consensus 47 ~~~~~~i~f~-~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~ 98 (312)
.++..+|.|| ..| ..|....+.|.+++.+|.. .+.++.|.++... ....+.+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 3556677787 688 9999999999999999974 3666666654321 1235667
Q ss_pred hhCCC----CCCCcEEEEEcCCCCceeccC----CCCCHHHHHHHHHHH
Q 021468 99 YFGIT----GEAPKVLAYTGNDDAKKHILD----GELTLDKIKTFGEDF 139 (312)
Q Consensus 99 ~~~v~----~~~~P~~~~~~~~~~~~~~~~----g~~~~~~i~~fi~~~ 139 (312)
.||+. ++..|+.++++.+....+.+. ...+.++|.+.|+..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88886 223477778876664444442 235677888888765
No 301
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.24 E-value=0.015 Score=43.68 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=37.5
Q ss_pred CCCccEEEEEee-C-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCC
Q 021468 47 SPIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE 90 (312)
Q Consensus 47 ~~~~~~i~f~~~-~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~ 90 (312)
.+++.+|.||.. | +.|....+.+.++..+|+. .+.|+.|..+..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~ 70 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP 70 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence 556888899999 8 9999999999999999985 488888887653
No 302
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.14 E-value=0.011 Score=41.11 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=55.0
Q ss_pred EEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeeccCcCHH
Q 021468 180 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV 257 (312)
Q Consensus 180 ~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~ 257 (312)
.+++|..+.|.-|..+...+..+.... .+.+-.+|++.++. .+|+. .+|.+.+=..++.. ......+.++.+
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~-~~~~~~~~~d~~ 74 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFK-EQEELKWRFDEE 74 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGC-TSEEEESSB-HH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCccccc-ccceeCCCCCHH
Confidence 378899999999999888777754432 47888899997766 68885 79996654322211 133566789999
Q ss_pred HHHHHHH
Q 021468 258 ALYKFLK 264 (312)
Q Consensus 258 ~l~~fi~ 264 (312)
.|.+||+
T Consensus 75 ~L~~~L~ 81 (81)
T PF05768_consen 75 QLRAWLE 81 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999985
No 303
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.13 E-value=0.059 Score=43.51 Aligned_cols=109 Identities=15% Similarity=0.032 Sum_probs=76.8
Q ss_pred HHHHHhcCCCceEEeCCCcccccc--cCCCccEE-EEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchh
Q 021468 22 ADFVFSNKLPLVTIFTRENAPSVF--ESPIKNQL-LLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS 97 (312)
Q Consensus 22 ~~fi~~~~~~~v~~lt~~~~~~~~--~~~~~~~i-~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~ 97 (312)
..-...+....|.+++...+..-+ .+...|+| .+|... ..|.-+...|.++|.+|.. +.|+++-.+..-
T Consensus 82 r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~-iKFVki~at~cI------ 154 (240)
T KOG3170|consen 82 RATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ-IKFVKIPATTCI------ 154 (240)
T ss_pred HHHHHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc-ceEEeccccccc------
Confidence 334456778889999988876544 23335554 488888 9999999999999999999 888888765532
Q ss_pred hhhCCCCCCCcEEEEEcCCCCc-----eeccCCC-CCHHHHHHHHHHH
Q 021468 98 EYFGITGEAPKVLAYTGNDDAK-----KHILDGE-LTLDKIKTFGEDF 139 (312)
Q Consensus 98 ~~~~v~~~~~P~~~~~~~~~~~-----~~~~~g~-~~~~~i~~fi~~~ 139 (312)
..|--.. .||+++|..|... ...+.|. .+.+++..|+-+.
T Consensus 155 pNYPe~n--lPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 155 PNYPESN--LPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred CCCcccC--CCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhc
Confidence 2233333 4999998887632 1223443 6889999888774
No 304
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.07 E-value=0.0093 Score=40.41 Aligned_cols=49 Identities=10% Similarity=0.180 Sum_probs=35.9
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-----ccCCCCCCceEEE
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILF 237 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~~~i~~~Pt~~~ 237 (312)
+.+|..++|+.|...+..|.+. ++.+-.+|++.+.. ...+..++|.+++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 3578889999999998887653 46677778776653 2347778999755
No 305
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.04 E-value=0.011 Score=40.06 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=35.1
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCCCCCceEEE
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILF 237 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~i~~~Pt~~~ 237 (312)
++.|+.++|+.|+.+...|++. ++.+..+|+..... . ..+-..+|.+++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 6789999999999998888763 46666778776553 1 224567898743
No 306
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.01 E-value=0.012 Score=40.09 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=36.0
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCCC-CCceEEEEeCCCc
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSD-GFPTILFFPAGNK 243 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~i~-~~Pt~~~~~~g~~ 243 (312)
+++|+.++|+.|..+...|.+. ++.+-.+|++.+.. + ..+.. ++|.++ .+|+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~~ 61 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDVH 61 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCEE
Confidence 5789999999999988877763 35666677776533 2 23544 889774 44543
No 307
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=95.99 E-value=0.01 Score=43.36 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=54.3
Q ss_pred CeEEEeCccchhhhhcCCCcEEEEEEcCCCh---hhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCce
Q 021468 160 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCG---HCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT 234 (312)
Q Consensus 160 ~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~---~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt 234 (312)
-...++.++++.++. .....++ |.+..|. .|....=++-++.+.|.+ .+..+.+....... .+|++..+|+
T Consensus 10 g~~~vd~~~ld~~l~-~~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~Pa 85 (107)
T PF07449_consen 10 GWPRVDADTLDAFLA-APGDAVL-FFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPA 85 (107)
T ss_dssp TEEEE-CCCHHHHHH-CCSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred CCeeechhhHHHHHh-CCCcEEE-EECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCe
Confidence 356788899999874 3455554 4544444 444545477788888877 57777777332222 7899999999
Q ss_pred EEEEeCCCccc
Q 021468 235 ILFFPAGNKSF 245 (312)
Q Consensus 235 ~~~~~~g~~~~ 245 (312)
++|+++|..++
T Consensus 86 Lvf~R~g~~lG 96 (107)
T PF07449_consen 86 LVFFRDGRYLG 96 (107)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEECCEEEE
Confidence 99999997764
No 308
>PRK13599 putative peroxiredoxin; Provisional
Probab=95.97 E-value=0.032 Score=46.70 Aligned_cols=88 Identities=14% Similarity=0.117 Sum_probs=59.9
Q ss_pred CCc-EEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------------cc
Q 021468 177 SKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------HR 226 (312)
Q Consensus 177 ~k~-~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------------~~ 226 (312)
++. +|+.|++.||+.|....+.|.++..+|... ++.+..++++.... ..
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 454 467899999999999999999999999754 45566566554210 23
Q ss_pred CCC-------CCCceEEEEeCCCcccCcee-ec--cCcCHHHHHHHHHhc
Q 021468 227 AKS-------DGFPTILFFPAGNKSFDPIN-VD--VDRTVVALYKFLKKN 266 (312)
Q Consensus 227 ~~i-------~~~Pt~~~~~~g~~~~~~~~-y~--g~~~~~~l~~fi~~~ 266 (312)
|++ ...|+++++.....+ +.+. |. ...+.+++++.|...
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~I-r~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTI-RLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEE-EEEEEcCCCCCCCHHHHHHHHHHh
Confidence 454 257999999654444 2332 32 256789999998754
No 309
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.92 E-value=0.0088 Score=41.27 Aligned_cols=53 Identities=9% Similarity=0.252 Sum_probs=35.4
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc----CCCCCCceEEEEeCCCc
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR----AKSDGFPTILFFPAGNK 243 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~----~~i~~~Pt~~~~~~g~~ 243 (312)
+++|+.+||++|......|.+. ++.+-.+|++.+.. +. .+..++|++++ +|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence 4678899999999998888764 34455556665543 22 35678899733 4543
No 310
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.91 E-value=0.014 Score=42.33 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=36.6
Q ss_pred cEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-----cc----CCCCCCceEEEEeCCCcc
Q 021468 179 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HR----AKSDGFPTILFFPAGNKS 244 (312)
Q Consensus 179 ~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----~~----~~i~~~Pt~~~~~~g~~~ 244 (312)
.-++.|..+||++|..+...|.+. ++.+..+|++..+. .. -+..++|.+ |.+|+.+
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~--------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i 72 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTL--------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV 72 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc--------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE
Confidence 447789999999999998877665 23344556554432 11 245788987 4566544
No 311
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.91 E-value=0.024 Score=46.72 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=23.0
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHH
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNK 201 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~ 201 (312)
+.+..++.|+.+.|++|+.+.+.+..
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 46789999999999999999988875
No 312
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=95.91 E-value=0.095 Score=39.01 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=69.6
Q ss_pred CCCccEEE-EEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccC
Q 021468 47 SPIKNQLL-LFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILD 124 (312)
Q Consensus 47 ~~~~~~i~-f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~ 124 (312)
+....+|+ |=..| +.|-++...+.++|+....-..+.-+|.++ -+.+.+-|++... |++++|-++++....+.
T Consensus 21 t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdide---V~~~~~~~~l~~p--~tvmfFfn~kHmkiD~g 95 (142)
T KOG3414|consen 21 TEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDE---VPDFVKMYELYDP--PTVMFFFNNKHMKIDLG 95 (142)
T ss_pred ccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecch---hhhhhhhhcccCC--ceEEEEEcCceEEEeeC
Confidence 33344444 66677 999999999999999999988888889887 6689999999755 88887766665444442
Q ss_pred -C-------C-CCHHHHHHHHHHHhcCCC
Q 021468 125 -G-------E-LTLDKIKTFGEDFLEGKL 144 (312)
Q Consensus 125 -g-------~-~~~~~i~~fi~~~l~~~~ 144 (312)
| . .+.+++.+-++-...|.+
T Consensus 96 tgdn~Kin~~~~~kq~~Idiie~iyRga~ 124 (142)
T KOG3414|consen 96 TGDNNKINFAFEDKQEFIDIIETIYRGAR 124 (142)
T ss_pred CCCCceEEEEeccHHHHHHHHHHHHHhhh
Confidence 2 1 467888888888776654
No 313
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.79 E-value=0.052 Score=52.27 Aligned_cols=118 Identities=9% Similarity=0.080 Sum_probs=85.5
Q ss_pred ccccccCCCCHHHHHHHHHhc--CCCceEEeCCCcccccccCCCccEE-EEEeeC-CchhhHHHHHHHHHHHcCCeEEEE
Q 021468 8 KISYFDGKFDKSTIADFVFSN--KLPLVTIFTRENAPSVFESPIKNQL-LLFAVS-NDSEKLLPVFEEAAKSFKGKLIFV 83 (312)
Q Consensus 8 ~~~~y~g~~~~~~l~~fi~~~--~~~~v~~lt~~~~~~~~~~~~~~~i-~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~ 83 (312)
..+.|.|--.=+++.+||..- ....-..|+.+..+.+-.-.++.-| +|++++ +.|......+.++|....+ |..-
T Consensus 433 ~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~-i~~~ 511 (555)
T TIGR03143 433 TGLKFHGVPSGHELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN-VEAE 511 (555)
T ss_pred cceEEEecCccHhHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC-ceEE
Confidence 347888876666677776442 2223345666655554443345444 467888 9999999999999999775 8999
Q ss_pred EEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021468 84 YVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 136 (312)
Q Consensus 84 ~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi 136 (312)
.+|... +++++++|+|.+. |++++- + ...+.|..+.++|.+++
T Consensus 512 ~i~~~~---~~~~~~~~~v~~v--P~~~i~--~---~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 512 MIDVSH---FPDLKDEYGIMSV--PAIVVD--D---QQVYFGKKTIEEMLELI 554 (555)
T ss_pred EEECcc---cHHHHHhCCceec--CEEEEC--C---EEEEeeCCCHHHHHHhh
Confidence 999988 6799999999999 999662 2 23456888999998876
No 314
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.78 E-value=0.052 Score=39.71 Aligned_cols=91 Identities=15% Similarity=0.233 Sum_probs=58.5
Q ss_pred ccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCCCceEEEEeCCC---c
Q 021468 167 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGN---K 243 (312)
Q Consensus 167 ~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~i~~~Pt~~~~~~g~---~ 243 (312)
+...+.+ ...+.++|-|+..--. .....|.++|..++. .+.|+..... .....+++ .|++++|+... +
T Consensus 9 ~~l~~f~-~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~~~~-~~~~~~~~--~~~ivl~~p~~~~~k 79 (104)
T cd03069 9 AEFEKFL-SDDDASVVGFFEDEDS---KLLSEFLKAADTLRE--SFRFAHTSDK-QLLEKYGY--GEGVVLFRPPRLSNK 79 (104)
T ss_pred HHHHHHh-ccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh--cCEEEEEChH-HHHHhcCC--CCceEEEechhhhcc
Confidence 4455545 3456666666654322 356788999999977 4778654432 22356676 68888884311 1
Q ss_pred -ccCceeeccCcCHHHHHHHHHhc
Q 021468 244 -SFDPINVDVDRTVVALYKFLKKN 266 (312)
Q Consensus 244 -~~~~~~y~g~~~~~~l~~fi~~~ 266 (312)
-...+.|.|..+.+.|.+||..+
T Consensus 80 ~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 80 FEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cCcccccccCcCCHHHHHHHHHhh
Confidence 11335799988899999999876
No 315
>PHA03050 glutaredoxin; Provisional
Probab=95.74 E-value=0.02 Score=42.23 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=36.5
Q ss_pred cEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc---------ccCCCCCCceEEEEeCCCcc
Q 021468 179 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------HRAKSDGFPTILFFPAGNKS 244 (312)
Q Consensus 179 ~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---------~~~~i~~~Pt~~~~~~g~~~ 244 (312)
.-++.|..+||++|......|.+..-... .+..+|++.... ..-+-.++|.+++ +|+.+
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~-----~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~i 80 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRG-----AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSI 80 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcC-----CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEE
Confidence 34788999999999999888877632111 333445554211 2235678999844 45443
No 316
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=95.70 E-value=0.031 Score=43.61 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=50.5
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCe---EEEEEEeCCCCc----------------------cccchhhhh
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGK---LIFVYVQMDNED----------------------VGKPVSEYF 100 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~---i~f~~vd~~~~~----------------------~~~~l~~~~ 100 (312)
.++...++|-+.| ++|+.+.|++.++.+..... +-++.|..+.+. --.+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4556677788899 99999999999888888765 555555544322 015677889
Q ss_pred CCCCCCCcEEEEEcCCC
Q 021468 101 GITGEAPKVLAYTGNDD 117 (312)
Q Consensus 101 ~v~~~~~P~~~~~~~~~ 117 (312)
+|.+. |++.+...++
T Consensus 112 ~v~~i--P~l~i~~~dG 126 (157)
T KOG2501|consen 112 EVKGI--PALVILKPDG 126 (157)
T ss_pred ccCcC--ceeEEecCCC
Confidence 99988 8888776654
No 317
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.70 E-value=0.028 Score=38.20 Aligned_cols=69 Identities=6% Similarity=0.067 Sum_probs=44.2
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhh-----hCCCCCCCcEEEEEcCCCCceeccCC
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEY-----FGITGEAPKVLAYTGNDDAKKHILDG 125 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~-----~~v~~~~~P~~~~~~~~~~~~~~~~g 125 (312)
+++|+++| ++|+.+.+.|.+++. .+..+|.++.. ..... +++... |++ ++.+|. . -.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~------~~~~idi~~~~---~~~~~~~~~~~~~~~v--P~i-~~~~g~--~---l~ 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA------AYEWVDIEEDE---GAADRVVSVNNGNMTV--PTV-KFADGS--F---LT 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC------ceEEEeCcCCH---hHHHHHHHHhCCCcee--CEE-EECCCe--E---ec
Confidence 56889999 999999999887644 34567776632 33333 277777 998 455553 1 12
Q ss_pred CCCHHHHHHHHH
Q 021468 126 ELTLDKIKTFGE 137 (312)
Q Consensus 126 ~~~~~~i~~fi~ 137 (312)
..+..++.+.++
T Consensus 65 ~~~~~~~~~~l~ 76 (77)
T TIGR02200 65 NPSAAQVKAKLQ 76 (77)
T ss_pred CCCHHHHHHHhh
Confidence 455556655543
No 318
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=95.67 E-value=0.026 Score=43.77 Aligned_cols=58 Identities=10% Similarity=0.050 Sum_probs=43.1
Q ss_pred CCCccEEEEEeeC--CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCC
Q 021468 47 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE 105 (312)
Q Consensus 47 ~~~~~~i~f~~~~--~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~ 105 (312)
.++..++.||..| ..|...++.|.++.+++.+ +.|+.|+.+.......+.+.+++..+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~-~~vi~Is~d~~~~~~~~~~~~~~~~~ 84 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN-TVVLTISADLPFAQKRWCGAEGVDNV 84 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC-CEEEEEECCCHHHHHHHHHhcCCCCc
Confidence 4567788899988 7899999999999999975 88888888653213345555555434
No 319
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.65 E-value=0.053 Score=51.73 Aligned_cols=121 Identities=10% Similarity=-0.031 Sum_probs=87.9
Q ss_pred ccccccCCCCHHHHHHHHHhc--CCCceEEeCCCcccccccCCCcc-EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEE
Q 021468 8 KISYFDGKFDKSTIADFVFSN--KLPLVTIFTRENAPSVFESPIKN-QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFV 83 (312)
Q Consensus 8 ~~~~y~g~~~~~~l~~fi~~~--~~~~v~~lt~~~~~~~~~~~~~~-~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~ 83 (312)
..+.|.|--.=+++.+||..- ....-..|+++..+.+-.-.++. +-+|+++. +.|......+.++|.... .|.+-
T Consensus 73 ~~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~ 151 (517)
T PRK15317 73 TGVRFAGIPMGHEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHT 151 (517)
T ss_pred ceEEEEecCccHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEE
Confidence 468888887777778887542 22334456666555444333344 55678888 999999999999999755 59999
Q ss_pred EEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021468 84 YVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 84 ~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
.+|... ++++.++|+|... |++++ + + ...+.|..+.+.|.+.+.+.
T Consensus 152 ~id~~~---~~~~~~~~~v~~V--P~~~i-~-~---~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 152 MIDGAL---FQDEVEARNIMAV--PTVFL-N-G---EEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred EEEchh---CHhHHHhcCCccc--CEEEE-C-C---cEEEecCCCHHHHHHHHhcc
Confidence 999988 7799999999988 99955 2 2 12467888888888777663
No 320
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=95.64 E-value=0.06 Score=41.39 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=52.1
Q ss_pred CCccEEEEEe-eC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCc------------------cccchhhhhCCCCCC
Q 021468 48 PIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------VGKPVSEYFGITGEA 106 (312)
Q Consensus 48 ~~~~~i~f~~-~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~------------------~~~~l~~~~~v~~~~ 106 (312)
++..+|.||. .| +.|....+.+.++..++.+ .+.++.|..+... ....+.+.||+....
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 5577777884 66 8899999999999998864 3666666543311 023455666665431
Q ss_pred -------CcEEEEEcCCCCceeccCCCCCHHHHH
Q 021468 107 -------PKVLAYTGNDDAKKHILDGELTLDKIK 133 (312)
Q Consensus 107 -------~P~~~~~~~~~~~~~~~~g~~~~~~i~ 133 (312)
.|+.++++.++...+.+.|..+.+++.
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~ 136 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAE 136 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCCccchHH
Confidence 155556655444445555555554444
No 321
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.62 E-value=0.024 Score=43.29 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=40.1
Q ss_pred ccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhh---CCCCCCCcEEEEEcCC
Q 021468 50 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYF---GITGEAPKVLAYTGND 116 (312)
Q Consensus 50 ~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~---~v~~~~~P~~~~~~~~ 116 (312)
..+++|..+| ++|....|.+.++|+...+ +.+-.+-.+. ++++.++| |.... |++++++.+
T Consensus 43 ~~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~~~i~rd~---~~el~~~~lt~g~~~I--P~~I~~d~~ 107 (129)
T PF14595_consen 43 YNILVITETWCGDCARNVPVLAKIAEANPN-IEVRIILRDE---NKELMDQYLTNGGRSI--PTFIFLDKD 107 (129)
T ss_dssp EEEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEEEEE-HHH---HHHHTTTTTT-SS--S--SEEEEE-TT
T ss_pred cEEEEEECCCchhHHHHHHHHHHHHHhCCC-CeEEEEEecC---ChhHHHHHHhCCCeec--CEEEEEcCC
Confidence 4667788899 9999999999999998754 5555554444 44666554 55555 999999765
No 322
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=95.57 E-value=0.11 Score=37.77 Aligned_cols=96 Identities=10% Similarity=0.144 Sum_probs=61.1
Q ss_pred EEEeC-ccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCCCceEEEEeC
Q 021468 162 KIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPA 240 (312)
Q Consensus 162 ~~l~~-~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~i~~~Pt~~~~~~ 240 (312)
+.++. +.+..++......++|-|+...-. .....|.++|..++. .+.|+..... .....+++ ..|++.+|+.
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~--d~~F~~~~~~-~~~~~~~~-~~~~i~l~~~ 75 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP--YIKFFATFDS-KVAKKLGL-KMNEVDFYEP 75 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc--CCEEEEECcH-HHHHHcCC-CCCcEEEeCC
Confidence 34533 446666531455666666654322 345678999999976 5777644322 22244554 4699999976
Q ss_pred CCcccCceee-ccCcCHHHHHHHHHhc
Q 021468 241 GNKSFDPINV-DVDRTVVALYKFLKKN 266 (312)
Q Consensus 241 g~~~~~~~~y-~g~~~~~~l~~fi~~~ 266 (312)
... ..+.| .|..+.+.|.+||..+
T Consensus 76 ~~e--~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 76 FME--EPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCC--CCcccCCCCCCHHHHHHHHHHh
Confidence 333 34578 7788999999999876
No 323
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=95.43 E-value=0.14 Score=41.80 Aligned_cols=93 Identities=9% Similarity=-0.060 Sum_probs=60.1
Q ss_pred CCCccEEEEE-eeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCc----------------------cccchhhhhC
Q 021468 47 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED----------------------VGKPVSEYFG 101 (312)
Q Consensus 47 ~~~~~~i~f~-~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~----------------------~~~~l~~~~~ 101 (312)
.++..+|.|| +.| ..|...++.|.++..+|.+ .+.++.|.++... ....+++.||
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 3556677788 899 9999999999999999863 3555555544210 1346778899
Q ss_pred CCC----CCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021468 102 ITG----EAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF 139 (312)
Q Consensus 102 v~~----~~~P~~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 139 (312)
+.. ...|+.++++.++...+.+ ...+..+++.+.|+..
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA 155 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 862 1247776776554333332 1235788888877654
No 324
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=95.40 E-value=0.31 Score=35.31 Aligned_cols=87 Identities=18% Similarity=0.250 Sum_probs=63.0
Q ss_pred ccEEEEEeeC-CchhhHHHHHHHHHHHcCC--eEEEEEEeCCCCccccchh----hhhCCCCCCCcEEEEEcCCCCc--e
Q 021468 50 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVGKPVS----EYFGITGEAPKVLAYTGNDDAK--K 120 (312)
Q Consensus 50 ~~~i~f~~~~-~~c~~~~~~~~~la~~~~~--~i~f~~vd~~~~~~~~~l~----~~~~v~~~~~P~~~~~~~~~~~--~ 120 (312)
.+++.|-.+. .+-.++.+.++++|+.+.+ +++|+.||-++. +-+. +-|||.-. .|.+.+.+-.... =
T Consensus 22 ~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F---Pllv~yWektF~IDl~-~PqIGVV~vtdadSvW 97 (120)
T cd03074 22 IHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF---PLLVPYWEKTFGIDLF-RPQIGVVNVTDADSVW 97 (120)
T ss_pred ceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC---chhhHHHHhhcCcccC-CCceeeEeccccccee
Confidence 3344444444 8889999999999999874 699999999984 3444 56788866 6888887765432 2
Q ss_pred eccCCC---CCHHHHHHHHHHHh
Q 021468 121 HILDGE---LTLDKIKTFGEDFL 140 (312)
Q Consensus 121 ~~~~g~---~~~~~i~~fi~~~l 140 (312)
+...+. .+.++|..||++.+
T Consensus 98 ~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 98 MEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred EecccccccCcHHHHHHHHHhhC
Confidence 333333 78999999999864
No 325
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.37 E-value=0.038 Score=38.32 Aligned_cols=57 Identities=9% Similarity=-0.000 Sum_probs=39.6
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc--cccchhhhhCCCCCCCcEEEE
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--VGKPVSEYFGITGEAPKVLAY 112 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~--~~~~l~~~~~v~~~~~P~~~~ 112 (312)
+++|+++| ++|+.+.+.+.++. ..+.+.+..+|.+... ....+.+.+|+... |++.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~v--P~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITGQRTV--PNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhCCCCC--CeEEE
Confidence 46789999 99999999999887 4444666666665321 00125566788877 99843
No 326
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.02 E-value=0.041 Score=39.71 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=33.5
Q ss_pred CcEEEEEEc----CCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCCCceEEE
Q 021468 178 KDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILF 237 (312)
Q Consensus 178 k~~lV~f~~----~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~i~~~Pt~~~ 237 (312)
..++|+-.+ +||++|......|.+. ++.+..+|+..+.. ...+-.++|.+++
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 445554432 8999999998888775 35566677765543 1234567888743
No 327
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.99 E-value=0.13 Score=49.03 Aligned_cols=121 Identities=9% Similarity=0.038 Sum_probs=87.5
Q ss_pred ccccccCCCCHHHHHHHHHh--cCCCceEEeCCCcccccccCCCc-cEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEE
Q 021468 8 KISYFDGKFDKSTIADFVFS--NKLPLVTIFTRENAPSVFESPIK-NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFV 83 (312)
Q Consensus 8 ~~~~y~g~~~~~~l~~fi~~--~~~~~v~~lt~~~~~~~~~~~~~-~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~ 83 (312)
..+.|.|--.=+++.+||.. +....-..|+++..+.+-.-.++ .+-+|+++. +.|......+.+++..... |..-
T Consensus 74 ~~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~-i~~~ 152 (515)
T TIGR03140 74 TGIRFAGIPGGHEFTSLVLAILQVGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPN-ISHT 152 (515)
T ss_pred cceEEEecCCcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC-ceEE
Confidence 45888888766777777754 22223356766665554433334 355677777 9999999999999999774 8888
Q ss_pred EEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021468 84 YVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 84 ~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
.+|... ++++.++|++... |++++ + +. ..+.|..+.+.+.+.+...
T Consensus 153 ~id~~~---~~~~~~~~~v~~V--P~~~i-~-~~---~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 153 MIDGAL---FQDEVEALGIQGV--PAVFL-N-GE---EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred EEEchh---CHHHHHhcCCccc--CEEEE-C-Cc---EEEecCCCHHHHHHHHhhc
Confidence 899988 7799999999988 99965 2 21 2467888888887777655
No 328
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=94.98 E-value=0.056 Score=43.27 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=43.2
Q ss_pred CCCccEEEEEeeC--CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCC
Q 021468 47 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGIT 103 (312)
Q Consensus 47 ~~~~~~i~f~~~~--~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~ 103 (312)
.++..+|.||..| +.|...+|.|.++++++.+ +.++.|.++.......+++.+|+.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~-~~vv~vs~D~~~~~~~f~~~~~~~ 100 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDN-TVVLCISADLPFAQKRFCGAEGLE 100 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCC-cEEEEEeCCCHHHHHHHHHhCCCC
Confidence 4557788899999 7899999999999999964 788888877632255667777664
No 329
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=94.94 E-value=0.2 Score=40.89 Aligned_cols=93 Identities=9% Similarity=-0.066 Sum_probs=62.3
Q ss_pred CCCccEEEEE-eeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCc----------------------cccchhhhhC
Q 021468 47 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED----------------------VGKPVSEYFG 101 (312)
Q Consensus 47 ~~~~~~i~f~-~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~----------------------~~~~l~~~~~ 101 (312)
.++..++.|| ..| +.|...++.|.++..+|.+ .+.++.|..+... ....+++.||
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 3445666678 788 9999999999999999964 2555555544311 1347788899
Q ss_pred CC----CCCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021468 102 IT----GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF 139 (312)
Q Consensus 102 v~----~~~~P~~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 139 (312)
+. +...|+.++++.++...+.+ ...++.+++.+.+..+
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 84 22237777887665333332 3347899999988775
No 330
>PRK10638 glutaredoxin 3; Provisional
Probab=94.94 E-value=0.044 Score=38.22 Aligned_cols=49 Identities=12% Similarity=0.222 Sum_probs=34.2
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCCCCCceEEE
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILF 237 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~i~~~Pt~~~ 237 (312)
+++|..+||++|......|.+. ++.+..+|++.+.. . ..+...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 6678889999999988877764 35566677766542 1 235567898744
No 331
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=94.89 E-value=0.093 Score=37.03 Aligned_cols=35 Identities=29% Similarity=0.596 Sum_probs=26.8
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEE
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKM 217 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~v 217 (312)
++.|+++.|++|..+.+.+.++.....+ ++.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~ 35 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYR 35 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEe
Confidence 4689999999999999999999855544 3444443
No 332
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=94.89 E-value=0.34 Score=36.58 Aligned_cols=87 Identities=8% Similarity=0.042 Sum_probs=62.2
Q ss_pred cEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceec-------
Q 021468 51 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI------- 122 (312)
Q Consensus 51 ~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~------- 122 (312)
.+|-|=.+| +.|-++...+.++|.+.+.-..+..+|.++ -+.+.+-|.+. . |-++++|-+++.....
T Consensus 23 vViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~---Vpdfn~~yel~-d-P~tvmFF~rnkhm~vD~Gtgnnn 97 (133)
T PF02966_consen 23 VVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDE---VPDFNQMYELY-D-PCTVMFFFRNKHMMVDFGTGNNN 97 (133)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT---THCCHHHTTS--S-SEEEEEEETTEEEEEESSSSSSS
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEccc---chhhhcccccC-C-CeEEEEEecCeEEEEEecCCCcc
Confidence 334466677 999999999999999999999999999998 66888999997 3 4567777444332222
Q ss_pred -cCCC-CCHHHHHHHHHHHhcC
Q 021468 123 -LDGE-LTLDKIKTFGEDFLEG 142 (312)
Q Consensus 123 -~~g~-~~~~~i~~fi~~~l~~ 142 (312)
..+. .+.+++.+-++....|
T Consensus 98 Kin~~~~~kqe~iDiie~iyrg 119 (133)
T PF02966_consen 98 KINWAFEDKQEFIDIIETIYRG 119 (133)
T ss_dssp SBCS--SCHHHHHHHHHHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHHH
Confidence 3333 3578888888776544
No 333
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=94.89 E-value=0.13 Score=39.90 Aligned_cols=42 Identities=7% Similarity=0.084 Sum_probs=34.0
Q ss_pred CccEEEEE-eeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCC
Q 021468 49 IKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNE 90 (312)
Q Consensus 49 ~~~~i~f~-~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~ 90 (312)
+..+|+|| ..| +.|+..+|.+.++..++.+ .+.++.|..+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 45666665 788 9999999999999999964 388888887764
No 334
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.87 E-value=0.062 Score=41.87 Aligned_cols=32 Identities=25% Similarity=0.519 Sum_probs=27.7
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhc
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 207 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~ 207 (312)
+.+..++.|+.++|++|+.+.+.+..+...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 35778999999999999999999999877653
No 335
>PRK13191 putative peroxiredoxin; Provisional
Probab=94.84 E-value=0.047 Score=45.69 Aligned_cols=89 Identities=7% Similarity=0.094 Sum_probs=59.3
Q ss_pred CCCcEE-EEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------------c
Q 021468 176 ESKDVL-LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------H 225 (312)
Q Consensus 176 ~~k~~l-V~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------------~ 225 (312)
.++.++ ++|+++||+.|....+.|.+++.+|+.. ++.+..++++.... .
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~ 110 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK 110 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence 355544 4788999999999999999999999764 46666666654221 1
Q ss_pred cCCCC-------CCceEEEEeCCCcccCce-eec--cCcCHHHHHHHHHhc
Q 021468 226 RAKSD-------GFPTILFFPAGNKSFDPI-NVD--VDRTVVALYKFLKKN 266 (312)
Q Consensus 226 ~~~i~-------~~Pt~~~~~~g~~~~~~~-~y~--g~~~~~~l~~fi~~~ 266 (312)
.|++. ..|+.+++.....+ +.+ .+. ..++.+++++.|...
T Consensus 111 ~ygv~~~~~~~~~~r~tfIID~~G~I-r~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 111 RLGMIHAESSTATVRAVFIVDDKGTV-RLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HcCCcccccCCceeEEEEEECCCCEE-EEEEecCCCCCCCHHHHHHHHHHh
Confidence 23431 36888888654444 222 222 256899999999765
No 336
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=94.81 E-value=0.19 Score=39.49 Aligned_cols=42 Identities=5% Similarity=0.086 Sum_probs=31.9
Q ss_pred CCCccEEEEEeeC--CchhhHHHHHHHHHHHcCC-eEEEEEEeCC
Q 021468 47 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG-KLIFVYVQMD 88 (312)
Q Consensus 47 ~~~~~~i~f~~~~--~~c~~~~~~~~~la~~~~~-~i~f~~vd~~ 88 (312)
.++..+|.||..| ..|....+.+.++.+++.+ .+.|+.|..+
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d 73 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD 73 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4557778888765 7799999999999999864 3666666653
No 337
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=94.78 E-value=0.061 Score=46.23 Aligned_cols=90 Identities=9% Similarity=0.038 Sum_probs=59.1
Q ss_pred CCCcEEEEEE-cCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc------------------------------c
Q 021468 176 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------------------H 224 (312)
Q Consensus 176 ~~k~~lV~f~-~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~------------------------------~ 224 (312)
.++.++++|| +.||+.|....+.|.++..+|+.. ++.+..+.++... .
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence 3567777777 899999999999999999999754 3555555554310 0
Q ss_pred ccCCCC-----CCceEEEEeCCCcccCceeec--cCcCHHHHHHHHHhc
Q 021468 225 HRAKSD-----GFPTILFFPAGNKSFDPINVD--VDRTVVALYKFLKKN 266 (312)
Q Consensus 225 ~~~~i~-----~~Pt~~~~~~g~~~~~~~~y~--g~~~~~~l~~fi~~~ 266 (312)
..|++. ..|+.+++.....+-....+. ...+.+++++.|...
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 234553 479999996444431112232 266888888888654
No 338
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.062 Score=37.26 Aligned_cols=49 Identities=16% Similarity=0.324 Sum_probs=35.0
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc--c-----ccC-CCCCCceEEE
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H-----HRA-KSDGFPTILF 237 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--~-----~~~-~i~~~Pt~~~ 237 (312)
++.|..++|++|......|.+. ++.+..++++... . ... +..++|.+++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 6778899999999988877733 4666666666655 2 222 5788998776
No 339
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=94.67 E-value=0.049 Score=45.16 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=33.4
Q ss_pred cEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021468 179 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 221 (312)
Q Consensus 179 ~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 221 (312)
.+|+.|+++||+.|....+.|.++..+|+.. ++.+..++++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCC
Confidence 3455888999999999999999999999764 46666666554
No 340
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.66 E-value=0.22 Score=42.79 Aligned_cols=29 Identities=14% Similarity=0.333 Sum_probs=23.9
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHH
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAK 204 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~ 204 (312)
+.+.+++.|..+.|++|+++...+..+.+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 45778999999999999999887766543
No 341
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.53 E-value=0.071 Score=37.85 Aligned_cols=56 Identities=21% Similarity=0.390 Sum_probs=34.8
Q ss_pred CCcEEEEEEc----CCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCCCCceEEEEeCCC
Q 021468 177 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGN 242 (312)
Q Consensus 177 ~k~~lV~f~~----~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~i~~~Pt~~~~~~g~ 242 (312)
..+++|+-.+ +||++|......|.+. ++.+..+|+..+.. ..-+-.++|.++ .+|.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL--------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VNGE 72 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc--------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--ECCE
Confidence 3455554433 7999999988877776 24555566655443 123566889973 3554
No 342
>PRK13189 peroxiredoxin; Provisional
Probab=94.41 E-value=0.068 Score=44.95 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=58.1
Q ss_pred CCCc-EEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc-----------------------------c
Q 021468 176 ESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------H 225 (312)
Q Consensus 176 ~~k~-~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~-----------------------------~ 225 (312)
.++. +|++|+++||+.|....+.|.+++.+|+.. ++.+..++++.... .
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~ 112 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAK 112 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHH
Confidence 3554 455778999999999999999999999754 45555555543110 2
Q ss_pred cCCCC-------CCceEEEEeCCCcccCceee-c--cCcCHHHHHHHHHhc
Q 021468 226 RAKSD-------GFPTILFFPAGNKSFDPINV-D--VDRTVVALYKFLKKN 266 (312)
Q Consensus 226 ~~~i~-------~~Pt~~~~~~g~~~~~~~~y-~--g~~~~~~l~~fi~~~ 266 (312)
.|++. .+|+.+++.....+ +.+.+ . ..++.+++.+.|...
T Consensus 113 ~ygv~~~~~~~~~~r~tfIID~~G~I-r~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 113 KLGMISPGKGTNTVRAVFIIDPKGII-RAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HhCCCccccCCCceeEEEEECCCCeE-EEEEecCCCCCCCHHHHHHHHHHh
Confidence 33543 46888888644444 22322 2 356788999988765
No 343
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=94.38 E-value=0.32 Score=36.75 Aligned_cols=69 Identities=20% Similarity=0.332 Sum_probs=53.3
Q ss_pred ccchhhhhc-CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCce-EEEE
Q 021468 167 NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPT-ILFF 238 (312)
Q Consensus 167 ~~f~~~i~~-~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt-~~~~ 238 (312)
-..++.|.. .++.++|-|-..|-+.|..+-..+.+++.+.++ -..++.+|.++-+. .-|.+. -|. ++||
T Consensus 9 ~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 9 WHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELY-DPCTVMFF 81 (133)
T ss_dssp HHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred chHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence 344555543 468899999999999999999999999999988 58999999997766 567777 676 4444
No 344
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=94.12 E-value=0.38 Score=37.34 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=32.3
Q ss_pred CccEEEEE-eeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCC
Q 021468 49 IKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDN 89 (312)
Q Consensus 49 ~~~~i~f~-~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~ 89 (312)
+..+|.|| +.| +.|....|.+.++..++.+ .+.++.|..+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 45666777 788 9999999999999999964 47777776543
No 345
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.03 E-value=0.03 Score=48.32 Aligned_cols=85 Identities=18% Similarity=0.303 Sum_probs=66.0
Q ss_pred CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCCCceEEEEeCCCcccCceeeccC
Q 021468 177 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILFFPAGNKSFDPINVDVD 253 (312)
Q Consensus 177 ~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~ 253 (312)
..++-+.||++||+..+...+.+.-....|.. +....++-..... ..+++.+.|++.+-...- +..|.|.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~----~~~~~~~ 148 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC----PASYRGE 148 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeecccc----chhhccc
Confidence 45688999999999999999999999998875 2222233222222 688999999999886543 3489999
Q ss_pred cCHHHHHHHHHhcCC
Q 021468 254 RTVVALYKFLKKNAS 268 (312)
Q Consensus 254 ~~~~~l~~fi~~~~~ 268 (312)
.+..+|..|..+.++
T Consensus 149 r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 149 RDLASLVNFYTEITP 163 (319)
T ss_pred ccHHHHHHHHHhhcc
Confidence 999999999999986
No 346
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=94.00 E-value=0.11 Score=42.84 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=35.0
Q ss_pred CCCcEEEEEEc-CCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021468 176 ESKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 221 (312)
Q Consensus 176 ~~k~~lV~f~~-~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 221 (312)
.++.++|+||. .||..|....+.+.++..+|... ++.++.|+++.
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~ 80 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDS 80 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCC
Confidence 36788889995 88999988888999999999864 46666666553
No 347
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=93.93 E-value=0.16 Score=41.50 Aligned_cols=102 Identities=11% Similarity=0.122 Sum_probs=73.2
Q ss_pred CceEEeCCC-cccccccCC---CccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCC
Q 021468 31 PLVTIFTRE-NAPSVFESP---IKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGE 105 (312)
Q Consensus 31 ~~v~~lt~~-~~~~~~~~~---~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~ 105 (312)
..|.++++. .|-+.+... ...+|.+|-+- ..|..+-..+.=||.+|.- +.|+++..+. ....++|.....
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~-vKFckikss~----~gas~~F~~n~l 212 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI-VKFCKIKSSN----TGASDRFSLNVL 212 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc-eeEEEeeecc----ccchhhhcccCC
Confidence 367777665 454444332 22345578888 9999999999999999998 9999998765 467788988877
Q ss_pred CCcEEEEEcCCCCc--eec----cCCCCCHHHHHHHHHHH
Q 021468 106 APKVLAYTGNDDAK--KHI----LDGELTLDKIKTFGEDF 139 (312)
Q Consensus 106 ~~P~~~~~~~~~~~--~~~----~~g~~~~~~i~~fi~~~ 139 (312)
|+++||.+|... .+. +........+.+|++.+
T Consensus 213 --P~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 213 --PTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred --ceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999999988732 111 22345666777777775
No 348
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=93.85 E-value=0.12 Score=35.79 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=53.5
Q ss_pred EEEEeeC--CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCC-CceeccCCCCCH
Q 021468 53 LLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD-AKKHILDGELTL 129 (312)
Q Consensus 53 i~f~~~~--~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~-~~~~~~~g~~~~ 129 (312)
+.||+.. .-|..+...+.+++.... +.+..||.++ ++.+..+||. .. |.+.+-.... .......+..+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~--~~l~~vDI~~---d~~l~~~Y~~-~I--PVl~~~~~~~~~~~~~~~~~~d~ 73 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP--FELEEVDIDE---DPELFEKYGY-RI--PVLHIDGIRQFKEQEELKWRFDE 73 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST--CEEEEEETTT---THHHHHHSCT-ST--SEEEETT-GGGCTSEEEESSB-H
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC--ceEEEEECCC---CHHHHHHhcC-CC--CEEEEcCcccccccceeCCCCCH
Confidence 3455555 889999999988665554 8888999987 5689999997 45 9986643211 112344567899
Q ss_pred HHHHHHHH
Q 021468 130 DKIKTFGE 137 (312)
Q Consensus 130 ~~i~~fi~ 137 (312)
+.|.+|++
T Consensus 74 ~~L~~~L~ 81 (81)
T PF05768_consen 74 EQLRAWLE 81 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99999874
No 349
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.80 E-value=0.12 Score=37.72 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=50.3
Q ss_pred CCcccccccCCCccEEEEEeeCCchh---hHHHHHHHHHHHcCCeEEEEEEeCCCCc-cccchhhhhCCCCCCCcEEEEE
Q 021468 38 RENAPSVFESPIKNQLLLFAVSNDSE---KLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAYT 113 (312)
Q Consensus 38 ~~~~~~~~~~~~~~~i~f~~~~~~c~---~~~~~~~~la~~~~~~i~f~~vd~~~~~-~~~~l~~~~~v~~~~~P~~~~~ 113 (312)
.+.++.+...+....+++|.-+..|. .....|++......+.+.++++|.-+.+ ....++..|||.-- .|-++++
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~He-SPQ~ili 85 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHE-SPQVILI 85 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-----SSEEEEE
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcC-CCcEEEE
Confidence 34566777666666777787776675 4455555555555556999999987731 12255689999876 6888888
Q ss_pred cCCCCceeccCCCCCHHHH
Q 021468 114 GNDDAKKHILDGELTLDKI 132 (312)
Q Consensus 114 ~~~~~~~~~~~g~~~~~~i 132 (312)
.+|+..-..-...++.++|
T Consensus 86 ~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 86 KNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp ETTEEEEEEEGGG-SHHHH
T ss_pred ECCEEEEECccccCCHHhc
Confidence 8886322111234666655
No 350
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=93.78 E-value=1 Score=36.66 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=43.5
Q ss_pred CCCccEEEEEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCC--------Cccccchhh-hhCCCCCCCcEEE
Q 021468 47 SPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDN--------EDVGKPVSE-YFGITGEAPKVLA 111 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~--------~~~~~~l~~-~~~v~~~~~P~~~ 111 (312)
.++..+|.|+++| +.|.+ .+.|.++.++|.+ .+.++.+.|+. ......+|+ .+|+. + |.+.
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-F--pv~~ 95 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-F--PMFS 95 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-c--eeEE
Confidence 3567888899999 98875 8899999999985 38899998853 111345554 57762 4 7553
No 351
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=93.75 E-value=0.36 Score=35.50 Aligned_cols=88 Identities=15% Similarity=0.209 Sum_probs=57.0
Q ss_pred cccccccCC-CccEEEEEeeCCchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCC-
Q 021468 40 NAPSVFESP-IKNQLLLFAVSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDD- 117 (312)
Q Consensus 40 ~~~~~~~~~-~~~~i~f~~~~~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~- 117 (312)
.++.++... ...+|-||..... .....|.++|..+.+.+.|+..... .+...+++.. |.++++++..
T Consensus 10 ele~f~~~~~~~~VVG~F~~~~~--~~~~~F~~vA~~~Rdd~~F~~t~~~------~~~~~~~~~~---~~vvl~rp~~~ 78 (107)
T cd03068 10 QVQEFLRDGDDVIIIGVFSGEED--PAYQLYQDAANSLREDYKFHHTFDS------EIFKSLKVSP---GQLVVFQPEKF 78 (107)
T ss_pred HHHHHHhcCCCEEEEEEECCCCC--HHHHHHHHHHHhcccCCEEEEEChH------HHHHhcCCCC---CceEEECcHHH
Confidence 355555555 5666667766422 4677889999999888999775532 5667788753 4455553322
Q ss_pred -----CceeccCCC-CCHHH-HHHHHHH
Q 021468 118 -----AKKHILDGE-LTLDK-IKTFGED 138 (312)
Q Consensus 118 -----~~~~~~~g~-~~~~~-i~~fi~~ 138 (312)
.....|.|. .+.+. |.+|+.+
T Consensus 79 ~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 79 QSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred hhhcCcceeeeeccccchHHHHHHHHhc
Confidence 234556777 57766 9999975
No 352
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.63 E-value=0.17 Score=36.89 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=52.9
Q ss_pred ccchhhhhc-CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCC-CCceEEEE
Q 021468 167 NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-GFPTILFF 238 (312)
Q Consensus 167 ~~f~~~i~~-~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~i~-~~Pt~~~~ 238 (312)
+.+++.+.. ..++++|+=.++.|+-.......|++....... .+.++.+|+-.... ..|+|. .-|.++++
T Consensus 8 eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 8 EQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp HHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred HHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 566665533 368888888999999999988888888887766 48899999888765 578886 45999999
Q ss_pred eCCCcc
Q 021468 239 PAGNKS 244 (312)
Q Consensus 239 ~~g~~~ 244 (312)
++|+.+
T Consensus 86 ~~g~~v 91 (105)
T PF11009_consen 86 KNGKVV 91 (105)
T ss_dssp ETTEEE
T ss_pred ECCEEE
Confidence 999874
No 353
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.58 E-value=0.23 Score=39.07 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=35.3
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeC
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 219 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~ 219 (312)
+.+.+|+.|+...|++|..+.+.+..+...+-..+.+.+...+.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 45778999999999999999999999999883333677777765
No 354
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=93.48 E-value=0.19 Score=38.61 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=35.7
Q ss_pred CCCccEEEEEeeC-Cc-hhhHHHHHHHHHHHcCC----eEEEEEEeCCC
Q 021468 47 SPIKNQLLLFAVS-ND-SEKLLPVFEEAAKSFKG----KLIFVYVQMDN 89 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~-c~~~~~~~~~la~~~~~----~i~f~~vd~~~ 89 (312)
.++..++.|+..| +. |....+.+.++..++.+ ++.++.|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4567788899999 76 99999999999999975 38888887654
No 355
>PRK15000 peroxidase; Provisional
Probab=93.45 E-value=0.53 Score=38.86 Aligned_cols=92 Identities=15% Similarity=0.170 Sum_probs=60.5
Q ss_pred CCccEEEEEee-C-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCc-------------------------cccchhhh
Q 021468 48 PIKNQLLLFAV-S-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY 99 (312)
Q Consensus 48 ~~~~~i~f~~~-~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~~ 99 (312)
++..++.||.. | ..|...++.|.+++.+|.. .+.++.|.++... ....+++.
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ 113 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKA 113 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHH
Confidence 44556667775 5 9999999999999999974 3666666655321 12356667
Q ss_pred hCCCC----CCCcEEEEEcCCCCceeccC----CCCCHHHHHHHHHHH
Q 021468 100 FGITG----EAPKVLAYTGNDDAKKHILD----GELTLDKIKTFGEDF 139 (312)
Q Consensus 100 ~~v~~----~~~P~~~~~~~~~~~~~~~~----g~~~~~~i~~fi~~~ 139 (312)
||+.. ...|..++++.++...+.+. ..++.+++++.++.+
T Consensus 114 ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 114 YGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred cCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 88761 12477777776553333332 247888998888765
No 356
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=93.28 E-value=0.59 Score=34.33 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=56.1
Q ss_pred ccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCCCceEEEEeCCCc---
Q 021468 167 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNK--- 243 (312)
Q Consensus 167 ~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~i~~~Pt~~~~~~g~~--- 243 (312)
+.+..++....+.++|-|+...-+ .....|.++|..++. .+.|+..... .....+++. .|.+++|+...-
T Consensus 9 ~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd--d~~F~~t~~~-~~~~~~~~~-~~~vvl~rp~~~~~k 81 (107)
T cd03068 9 KQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE--DYKFHHTFDS-EIFKSLKVS-PGQLVVFQPEKFQSK 81 (107)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc--CCEEEEEChH-HHHHhcCCC-CCceEEECcHHHhhh
Confidence 445665544325666666655322 355678899999987 5777654432 222455654 577777743211
Q ss_pred -ccCceeeccC-cCHHH-HHHHHHhc
Q 021468 244 -SFDPINVDVD-RTVVA-LYKFLKKN 266 (312)
Q Consensus 244 -~~~~~~y~g~-~~~~~-l~~fi~~~ 266 (312)
-.....|.|. .+... |.+||++|
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 82 YEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred cCcceeeeeccccchHHHHHHHHhcC
Confidence 1134578886 67756 99999875
No 357
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=93.12 E-value=0.37 Score=40.78 Aligned_cols=82 Identities=15% Similarity=0.248 Sum_probs=54.8
Q ss_pred CCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEe----------------------------------------
Q 021468 48 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQ---------------------------------------- 86 (312)
Q Consensus 48 ~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd---------------------------------------- 86 (312)
++..+++|..+. +.|+++.+.+.++.. .+ +.+..+.
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~--~~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNA--LG-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhc--CC-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 344455666677 999999988877643 12 3332221
Q ss_pred CCCC-ccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021468 87 MDNE-DVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 87 ~~~~-~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
|... ..+..+++++||++. |+++ +.+|. .+.|..+.+.|.+++.+.
T Consensus 184 c~~~v~~~~~la~~lgi~gT--Ptiv-~~~G~----~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGT--PAIV-LSNGT----LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccc--cEEE-EcCCe----EeeCCCCHHHHHHHHHHc
Confidence 2110 136788999999999 9996 54453 347889999999999863
No 358
>PRK10824 glutaredoxin-4; Provisional
Probab=93.07 E-value=0.13 Score=38.31 Aligned_cols=57 Identities=21% Similarity=0.273 Sum_probs=32.0
Q ss_pred CcEEEEEEc----CCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc----CCCCCCceEEEEeCCCcc
Q 021468 178 KDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR----AKSDGFPTILFFPAGNKS 244 (312)
Q Consensus 178 k~~lV~f~~----~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~----~~i~~~Pt~~~~~~g~~~ 244 (312)
.+++|+--+ |||++|......|..+. +.+..+|+..+.. .. -+-..+|.+++ +|+.+
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~I 81 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELV 81 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 445554333 69999999988887763 2333345554433 11 13446666544 55544
No 359
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=93.06 E-value=0.12 Score=40.92 Aligned_cols=93 Identities=13% Similarity=0.074 Sum_probs=62.3
Q ss_pred HHHHHHHhcCCCceEEeC--CCcccccccCCCccEEEEEeeC-CchhhHHH-HH--HHHHHHcCCeEEEEEEeCCCCccc
Q 021468 20 TIADFVFSNKLPLVTIFT--RENAPSVFESPIKNQLLLFAVS-NDSEKLLP-VF--EEAAKSFKGKLIFVYVQMDNEDVG 93 (312)
Q Consensus 20 ~l~~fi~~~~~~~v~~lt--~~~~~~~~~~~~~~~i~f~~~~-~~c~~~~~-~~--~~la~~~~~~i~f~~vd~~~~~~~ 93 (312)
+-+-|+.++....|.... ++.+..--..+++.+|.++..| ..|..+.. .| .++|..++..+.-++||.++ .
T Consensus 7 ~~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree---~ 83 (163)
T PF03190_consen 7 SKSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREE---R 83 (163)
T ss_dssp ---HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT----
T ss_pred CCCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecccc---C
Confidence 335688888888887444 4566666778888888899999 99998876 55 56888998888889999887 6
Q ss_pred cchhhhh--------CCCCCCCcEEEEEcCCC
Q 021468 94 KPVSEYF--------GITGEAPKVLAYTGNDD 117 (312)
Q Consensus 94 ~~l~~~~--------~v~~~~~P~~~~~~~~~ 117 (312)
+.+...| |.-|. |+.++...+.
T Consensus 84 Pdid~~y~~~~~~~~~~gGw--Pl~vfltPdg 113 (163)
T PF03190_consen 84 PDIDKIYMNAVQAMSGSGGW--PLTVFLTPDG 113 (163)
T ss_dssp HHHHHHHHHHHHHHHS---S--SEEEEE-TTS
T ss_pred ccHHHHHHHHHHHhcCCCCC--CceEEECCCC
Confidence 6887777 67777 8888887765
No 360
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=93.02 E-value=0.3 Score=34.06 Aligned_cols=77 Identities=8% Similarity=0.084 Sum_probs=51.3
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc-cccchhhhhC--CCCCCCcEEEEEcCCCCceeccCCCC
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFG--ITGEAPKVLAYTGNDDAKKHILDGEL 127 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~-~~~~l~~~~~--v~~~~~P~~~~~~~~~~~~~~~~g~~ 127 (312)
+.+|..+| +.|+.+...|++++.++.+ +.+..+|.+... ....+....| +... |++++ + |. .+ -
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~-i~~~~idi~~~~~~~~el~~~~~~~~~~v--P~ifi-~-g~--~i-----g 70 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDD-FDYRYVDIHAEGISKADLEKTVGKPVETV--PQIFV-D-QK--HI-----G 70 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccC-CcEEEEECCCChHHHHHHHHHHCCCCCcC--CEEEE-C-CE--EE-----c
Confidence 55677788 9999999999999988755 888888887631 0123444444 3555 99854 2 32 21 2
Q ss_pred CHHHHHHHHHHHh
Q 021468 128 TLDKIKTFGEDFL 140 (312)
Q Consensus 128 ~~~~i~~fi~~~l 140 (312)
..++|.++++..+
T Consensus 71 g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 GCTDFEAYVKENL 83 (85)
T ss_pred CHHHHHHHHHHhc
Confidence 4577777777654
No 361
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=92.88 E-value=0.2 Score=40.19 Aligned_cols=41 Identities=27% Similarity=0.531 Sum_probs=33.8
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEe
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 218 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd 218 (312)
..+..++.|+...|++|..+.+.+..+..++.+ .+.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcC
Confidence 568899999999999999999999999888855 45555444
No 362
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=92.27 E-value=2.7 Score=35.37 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCeEEEeCccchhhh--hcCCCcEEEEEEcCCChhhhcchHHHHHHHH
Q 021468 127 LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIV--LDESKDVLLEIYAPWCGHCQAFEPTYNKLAK 204 (312)
Q Consensus 127 ~~~~~i~~fi~~~l~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~i--~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~ 204 (312)
.|.+.+..-..-..-+-.+....+.+.| +.+|..+++....... ...+++.+|.|-+-.|++-..-...|.++++
T Consensus 53 fT~~~lk~vw~~~~ldl~~~a~~G~~AP---ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~ 129 (237)
T PF00837_consen 53 FTLESLKAVWKVMWLDLFKEAKLGGPAP---NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVE 129 (237)
T ss_pred hhHHHHHHHHHHHHHHcccceeCCCCCC---CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHH
Confidence 3445444433333322222333333333 5788888887743333 2568999999999999999999999999999
Q ss_pred HhcCC
Q 021468 205 HLRGV 209 (312)
Q Consensus 205 ~~~~~ 209 (312)
+|.+.
T Consensus 130 ~f~d~ 134 (237)
T PF00837_consen 130 DFSDV 134 (237)
T ss_pred Hhhhh
Confidence 99874
No 363
>PRK13190 putative peroxiredoxin; Provisional
Probab=92.23 E-value=0.91 Score=37.54 Aligned_cols=87 Identities=10% Similarity=0.099 Sum_probs=58.7
Q ss_pred EEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCc------------------------cccchhhhhCCCC----
Q 021468 55 LFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------------VGKPVSEYFGITG---- 104 (312)
Q Consensus 55 f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~------------------------~~~~l~~~~~v~~---- 104 (312)
|.+.| ..|...++.|.++..+|.. .+.++.|.++... ....+++.||+..
T Consensus 35 ~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g 114 (202)
T PRK13190 35 HPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSG 114 (202)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCC
Confidence 45777 9999999999999999874 2566666554210 1346777888842
Q ss_pred CCCcEEEEEcCCCCceec----cCCCCCHHHHHHHHHHHhc
Q 021468 105 EAPKVLAYTGNDDAKKHI----LDGELTLDKIKTFGEDFLE 141 (312)
Q Consensus 105 ~~~P~~~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~l~ 141 (312)
...|..++++.++...+. ..+.++.+++.+.++.+..
T Consensus 115 ~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 115 ATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred cEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 124887788766533322 2456899999999888643
No 364
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=92.14 E-value=2.7 Score=30.55 Aligned_cols=103 Identities=15% Similarity=0.059 Sum_probs=74.5
Q ss_pred EEEeCccchhhhhcC-CCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc------ccCCCC-CCc
Q 021468 162 KIVVGNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-GFP 233 (312)
Q Consensus 162 ~~l~~~~f~~~i~~~-~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~------~~~~i~-~~P 233 (312)
+.++..++.+...+. +...+|.|--+-.+.-..|..++.++|+....++++.|+-+|-+..+. +.|+|. .-|
T Consensus 4 rkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~P 83 (120)
T cd03074 4 RKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRP 83 (120)
T ss_pred hhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCC
Confidence 445666666655322 466888888888888899999999999999988899999999998775 346654 349
Q ss_pred eEEEEeCCCcccCceee--ccC---cCHHHHHHHHHhc
Q 021468 234 TILFFPAGNKSFDPINV--DVD---RTVVALYKFLKKN 266 (312)
Q Consensus 234 t~~~~~~g~~~~~~~~y--~g~---~~~~~l~~fi~~~ 266 (312)
.+-+..-... ..+-| .+. .+.+.|..||...
T Consensus 84 qIGVV~vtda--dSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 84 QIGVVNVTDA--DSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred ceeeEecccc--cceeEecccccccCcHHHHHHHHHhh
Confidence 9888754433 12233 232 5789999999864
No 365
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=91.69 E-value=1.6 Score=37.60 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=61.0
Q ss_pred CCccEEEEE-eeC-CchhhHHHHHHHHHHHcCCe-EEEEEEeCCCC-----------------c--------cccchhhh
Q 021468 48 PIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNE-----------------D--------VGKPVSEY 99 (312)
Q Consensus 48 ~~~~~i~f~-~~~-~~c~~~~~~~~~la~~~~~~-i~f~~vd~~~~-----------------~--------~~~~l~~~ 99 (312)
++..+++|| ..| ..|...++.|.++..+|.++ +.++.|.++.. . .+..+++.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 334555566 678 99999999999999999642 55555555431 0 13467889
Q ss_pred hCCCC---CCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021468 100 FGITG---EAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF 139 (312)
Q Consensus 100 ~~v~~---~~~P~~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 139 (312)
||+.. ...|+.++++.++...+.+ ...++.+++...|..+
T Consensus 178 yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 178 FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 99852 2247777887555333322 3457888988888765
No 366
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=91.61 E-value=0.68 Score=30.58 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=40.8
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccc-cchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCH
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVG-KPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL 129 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~-~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~ 129 (312)
+++|+.+| ++|..+...+.+. + +.+..+|.+..... ..+.+..++..+ |++.+ . + . ... ..+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~-i~~~~~~i~~~~~~~~~~~~~~~~~~v--P~i~~-~-~--~--~i~-g~~~ 66 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----G-IPFEEVDVDEDPEALEELKKLNGYRSV--PVVVI-G-D--E--HLS-GFRP 66 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----C-CCeEEEeCCCCHHHHHHHHHHcCCccc--CEEEE-C-C--E--EEe-cCCH
Confidence 45677788 9999998888763 3 56677777652201 122233366666 99865 2 2 1 222 3566
Q ss_pred HHHHHH
Q 021468 130 DKIKTF 135 (312)
Q Consensus 130 ~~i~~f 135 (312)
+.|.++
T Consensus 67 ~~l~~~ 72 (73)
T cd02976 67 DKLRAL 72 (73)
T ss_pred HHHHhh
Confidence 666654
No 367
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=91.43 E-value=3.1 Score=29.74 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=49.3
Q ss_pred cEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCCCceEEEEeCCCcccCceeeccCcCHHH
Q 021468 179 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA 258 (312)
Q Consensus 179 ~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~ 258 (312)
..++.|..+. ..|..+...++++|..-. .+.+-..+.. ...|++.+..+|+. ..++|.|-..-.+
T Consensus 21 V~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~---------~~~P~~~i~~~~~~--~gIrF~GiP~GhE 85 (94)
T cd02974 21 VELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDD---------ERKPSFSINRPGED--TGIRFAGIPMGHE 85 (94)
T ss_pred EEEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCC---------CCCCEEEEecCCCc--ccEEEEecCCchh
Confidence 3455666655 889999888888887543 3555433322 14799999887744 4689999666677
Q ss_pred HHHHHHh
Q 021468 259 LYKFLKK 265 (312)
Q Consensus 259 l~~fi~~ 265 (312)
+-.||..
T Consensus 86 f~Slila 92 (94)
T cd02974 86 FTSLVLA 92 (94)
T ss_pred HHHHHHH
Confidence 7777754
No 368
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=91.36 E-value=0.99 Score=38.71 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=29.1
Q ss_pred cchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHH
Q 021468 94 KPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGE 137 (312)
Q Consensus 94 ~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~ 137 (312)
..+.+.+||+++ |++++.+++ +......|..+.+.|.+.+.
T Consensus 209 ~~l~~~lGv~GT--Paiv~~d~~-G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 209 QKLMDDLGANAT--PAIYYMDKD-GTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHHHHHcCCCCC--CEEEEECCC-CCEEEecCCCCHHHHHHHhC
Confidence 346678999999 999776533 33334578888898887764
No 369
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=91.30 E-value=0.28 Score=45.29 Aligned_cols=50 Identities=10% Similarity=0.167 Sum_probs=36.0
Q ss_pred EEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--c---c---------CCCCCCceEEE
Q 021468 180 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R---------AKSDGFPTILF 237 (312)
Q Consensus 180 ~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~---~---------~~i~~~Pt~~~ 237 (312)
.++.|..+||++|......|.+. ++.+..+|+++... . + .+..++|++++
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 37789999999999988777764 46666777775543 1 1 25568899865
No 370
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=91.01 E-value=0.64 Score=33.93 Aligned_cols=53 Identities=9% Similarity=0.256 Sum_probs=34.3
Q ss_pred cEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc-----CCCCCCceEEE
Q 021468 179 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR-----AKSDGFPTILF 237 (312)
Q Consensus 179 ~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~-----~~i~~~Pt~~~ 237 (312)
.-+|.|..+||+.|..+...|.. +.. ...+..+|-..+.. +. -+-..+|.+++
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 45677999999999998877777 322 46666666554432 11 12347787665
No 371
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=90.94 E-value=1.6 Score=36.11 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=56.3
Q ss_pred EEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCc------------------------cccchhhhhCCCC----
Q 021468 55 LFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------------VGKPVSEYFGITG---- 104 (312)
Q Consensus 55 f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~------------------------~~~~l~~~~~v~~---- 104 (312)
|.+.| +.|....+.|.+++.+|.+ .+.++.|.++... ....+++.||+..
T Consensus 33 ~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~ 112 (203)
T cd03016 33 HPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAG 112 (203)
T ss_pred ecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCC
Confidence 55677 9999999999999999974 2667777655411 1246778899862
Q ss_pred C--CCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021468 105 E--APKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF 139 (312)
Q Consensus 105 ~--~~P~~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 139 (312)
. ..|..++++.++...+.. ...++.++|.+.+..+
T Consensus 113 ~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 113 STLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred CCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 2 123466776555333332 2246788898888775
No 372
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=90.65 E-value=0.57 Score=35.82 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=34.6
Q ss_pred CCCccEEEEE-eeC-CchhhHHHHHHHHHHHcC-CeEEEEEEeCCC
Q 021468 47 SPIKNQLLLF-AVS-NDSEKLLPVFEEAAKSFK-GKLIFVYVQMDN 89 (312)
Q Consensus 47 ~~~~~~i~f~-~~~-~~c~~~~~~~~~la~~~~-~~i~f~~vd~~~ 89 (312)
.++..+|.|| +.| ..|....+.+.++..+|. ..+.|+.|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4567777788 577 999999999999999985 348888887765
No 373
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=90.50 E-value=0.78 Score=37.68 Aligned_cols=37 Identities=8% Similarity=0.294 Sum_probs=27.7
Q ss_pred ccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHH
Q 021468 93 GKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFG 136 (312)
Q Consensus 93 ~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi 136 (312)
+..+++.+||++. |+++ +.+|. .+.|..+.+.|.+++
T Consensus 161 ~~~l~~~~gi~gt--Ptii-~~~G~----~~~G~~~~~~l~~~L 197 (197)
T cd03020 161 NLALGRQLGVNGT--PTIV-LADGR----VVPGAPPAAQLEALL 197 (197)
T ss_pred HHHHHHHcCCCcc--cEEE-ECCCe----EecCCCCHHHHHhhC
Confidence 4678899999999 9996 55553 246878888887764
No 374
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=90.31 E-value=0.86 Score=34.14 Aligned_cols=69 Identities=22% Similarity=0.186 Sum_probs=43.3
Q ss_pred cCCCccEEEEEe-------eC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCcc----ccchhh--hhCCCCCCCcEEE
Q 021468 46 ESPIKNQLLLFA-------VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV----GKPVSE--YFGITGEAPKVLA 111 (312)
Q Consensus 46 ~~~~~~~i~f~~-------~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~----~~~l~~--~~~v~~~~~P~~~ 111 (312)
..+.+.+|+|++ +| ++|....|.+.++-....+...|+.+....... +-.+-. .+++++. ||++
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~I--PTLi 94 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGI--PTLI 94 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SS--SEEE
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeec--ceEE
Confidence 344566677774 47 999999999999888877778888887643210 112333 5889888 9998
Q ss_pred EEcCC
Q 021468 112 YTGND 116 (312)
Q Consensus 112 ~~~~~ 116 (312)
-+..+
T Consensus 95 ~~~~~ 99 (119)
T PF06110_consen 95 RWETG 99 (119)
T ss_dssp ECTSS
T ss_pred EECCC
Confidence 88665
No 375
>PRK13191 putative peroxiredoxin; Provisional
Probab=89.00 E-value=2.2 Score=35.64 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=58.0
Q ss_pred cEEE--EEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCcc------------------------ccchhhhhCC
Q 021468 51 NQLL--LFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDV------------------------GKPVSEYFGI 102 (312)
Q Consensus 51 ~~i~--f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~------------------------~~~l~~~~~v 102 (312)
++|+ |...| ..|...++.|.+++.+|.. .+.++.|.++...- ...+++.||+
T Consensus 35 ~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv 114 (215)
T PRK13191 35 WFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGM 114 (215)
T ss_pred cEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCC
Confidence 4443 34666 9999999999999999964 26666666654220 2356677887
Q ss_pred C-----CCCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021468 103 T-----GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF 139 (312)
Q Consensus 103 ~-----~~~~P~~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 139 (312)
. +...|..++++.++...+.+ ...++.+++...++.+
T Consensus 115 ~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 115 IHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 4 12247777777665333322 2347899999988775
No 376
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=88.56 E-value=6.5 Score=28.08 Aligned_cols=73 Identities=14% Similarity=0.074 Sum_probs=51.3
Q ss_pred ccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCC
Q 021468 50 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELT 128 (312)
Q Consensus 50 ~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~ 128 (312)
++.+.+|.+. ..|+.+...++++|.-- ++|.+-..+.. . .. |++.+..++....+.|.|-..
T Consensus 20 pV~l~~f~~~~~~~~e~~~ll~e~a~lS-dkI~~~~~~~~------~--------~~--P~~~i~~~~~~~gIrF~GiP~ 82 (94)
T cd02974 20 PVELVASLDDSEKSAELLELLEEIASLS-DKITLEEDNDD------E--------RK--PSFSINRPGEDTGIRFAGIPM 82 (94)
T ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhC-CceEEEEecCC------C--------CC--CEEEEecCCCcccEEEEecCC
Confidence 3445566655 89999999999988765 44666443321 1 24 888888776555678889888
Q ss_pred HHHHHHHHHHH
Q 021468 129 LDKIKTFGEDF 139 (312)
Q Consensus 129 ~~~i~~fi~~~ 139 (312)
-.++..||...
T Consensus 83 GhEf~Slilai 93 (94)
T cd02974 83 GHEFTSLVLAL 93 (94)
T ss_pred chhHHHHHHHh
Confidence 89999888764
No 377
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.47 E-value=14 Score=33.21 Aligned_cols=163 Identities=10% Similarity=0.091 Sum_probs=103.8
Q ss_pred CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021468 60 NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 60 ~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
...+.++..+.++|..- +++++-..+... .. |.|.+-+.|......|-|-.--.++..++-..
T Consensus 31 ~~s~~~~~ll~eia~~S-~kis~~~~~~~~--------------Rk--pSF~i~r~g~~~gv~FAglPlGHEftSlVLaL 93 (520)
T COG3634 31 EKSKEIKELLDEIASLS-DKISLEEDSDLV--------------RK--PSFSINRPGEDQGVRFAGLPLGHEFTSLVLAL 93 (520)
T ss_pred cccHHHHHHHHHHHhhc-cceeeeecCccc--------------cC--CceeecCCCcccceEEecCcccchHHHHHHHH
Confidence 56788888888888765 446665532111 13 88888888877777888876667777777666
Q ss_pred hcCCCCCCCCCCCCCCCCCCCeEEEeCccchhhhhc-CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEe
Q 021468 140 LEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 218 (312)
Q Consensus 140 l~~~~~~~~~s~~~~~~~~~~v~~l~~~~f~~~i~~-~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd 218 (312)
+.-.- ..| .+..+-.++ +.+ ++...+=-|++-.|..|-..-..+.-++-. ++++.-..+|
T Consensus 94 lqv~G-------~pp--------k~~q~vieq-ik~i~g~~~FETy~SltC~nCPDVVQALN~msvl---Np~I~H~~Id 154 (520)
T COG3634 94 LQVGG-------HPP--------KEDQDVIEQ-IKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVL---NPRIKHTAID 154 (520)
T ss_pred HHhcC-------CCC--------chhHHHHHH-HHhcCCceeEEEEEEeeccCChHHHHHHHHHHhc---CCCceeEEec
Confidence 53110 001 122222222 332 334456667777899997776666655443 3468888888
Q ss_pred CCCccc--ccCCCCCCceEEEEeCCCcccCceeeccCcCHHHHHHHHHh
Q 021468 219 GTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 265 (312)
Q Consensus 219 ~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~ 265 (312)
...... +.-+|.++|++++ +|... -+|.++.++|..-|..
T Consensus 155 Ga~Fq~Evear~IMaVPtvfl--nGe~f-----g~GRmtleeilaki~~ 196 (520)
T COG3634 155 GALFQDEVEARNIMAVPTVFL--NGEEF-----GQGRMTLEEILAKIDT 196 (520)
T ss_pred chhhHhHHHhccceecceEEE--cchhh-----cccceeHHHHHHHhcC
Confidence 766554 5668999999876 55542 3577888888877755
No 378
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=88.05 E-value=1.2 Score=30.46 Aligned_cols=55 Identities=15% Similarity=0.176 Sum_probs=38.9
Q ss_pred ccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEE
Q 021468 50 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAY 112 (312)
Q Consensus 50 ~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~ 112 (312)
..+++|..+| +.|.+....|.+. + +.|..+|++.......+....|.... |.+.+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~-----g-i~y~~idi~~~~~~~~~~~~~g~~~v--P~i~i 63 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEK-----G-YDFEEIPLGNDARGRSLRAVTGATTV--PQVFI 63 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHc-----C-CCcEEEECCCChHHHHHHHHHCCCCc--CeEEE
Confidence 4566777788 9999999999753 3 66677787764323455566688777 98854
No 379
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=87.63 E-value=0.77 Score=38.09 Aligned_cols=40 Identities=28% Similarity=0.624 Sum_probs=31.0
Q ss_pred CCcEEEEEEcCCChhhhcchHHH---HHHHHHhcCCCcEEEEEEe
Q 021468 177 SKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMD 218 (312)
Q Consensus 177 ~k~~lV~f~~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd 218 (312)
+++.+|.|+.-.|++|..+.+.+ ..+.+.+.+ ++.+..+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEec
Confidence 46779999999999999999876 777887766 45555443
No 380
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.62 E-value=3.6 Score=30.60 Aligned_cols=68 Identities=26% Similarity=0.194 Sum_probs=47.1
Q ss_pred cCCCccEEEEEe--------eC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCcccc----chhhhhCC-CCCCCcEEE
Q 021468 46 ESPIKNQLLLFA--------VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGK----PVSEYFGI-TGEAPKVLA 111 (312)
Q Consensus 46 ~~~~~~~i~f~~--------~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~----~l~~~~~v-~~~~~P~~~ 111 (312)
..++..+++|+. +| ++|-+..|++.++-+...+.+.|+.++..+-+.++ .+-...++ .+. ||++
T Consensus 23 ~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~v--PTLl 100 (128)
T KOG3425|consen 23 ENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAV--PTLL 100 (128)
T ss_pred hCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeec--ceee
Confidence 344455666653 57 99999999999999988888999999987633233 33344555 444 7776
Q ss_pred EEcC
Q 021468 112 YTGN 115 (312)
Q Consensus 112 ~~~~ 115 (312)
=+.+
T Consensus 101 rw~~ 104 (128)
T KOG3425|consen 101 RWKR 104 (128)
T ss_pred EEcC
Confidence 5543
No 381
>PRK13189 peroxiredoxin; Provisional
Probab=87.30 E-value=3.6 Score=34.55 Aligned_cols=86 Identities=9% Similarity=0.072 Sum_probs=56.0
Q ss_pred EEeeC-CchhhHHHHHHHHHHHcCCe-EEEEEEeCCCCc------------------------cccchhhhhCCCC----
Q 021468 55 LFAVS-NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNED------------------------VGKPVSEYFGITG---- 104 (312)
Q Consensus 55 f~~~~-~~c~~~~~~~~~la~~~~~~-i~f~~vd~~~~~------------------------~~~~l~~~~~v~~---- 104 (312)
|.+.| ..|....+.|.+++.+|..+ +.++.|.++... ....+++.||+..
T Consensus 43 ~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~ 122 (222)
T PRK13189 43 HPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKG 122 (222)
T ss_pred eCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccC
Confidence 34677 99999999999999999642 555555544311 1346778888862
Q ss_pred -CCCcEEEEEcCCCCceec----cCCCCCHHHHHHHHHHHh
Q 021468 105 -EAPKVLAYTGNDDAKKHI----LDGELTLDKIKTFGEDFL 140 (312)
Q Consensus 105 -~~~P~~~~~~~~~~~~~~----~~g~~~~~~i~~fi~~~l 140 (312)
...|+.++++.++...+. ....++.+++...+..+.
T Consensus 123 ~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 123 TNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred CCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 123667777765533222 234578889988888753
No 382
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=87.26 E-value=4.1 Score=33.49 Aligned_cols=92 Identities=16% Similarity=0.172 Sum_probs=57.7
Q ss_pred CCccEEEEEe-eC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCc-------------------------cccchhhh
Q 021468 48 PIKNQLLLFA-VS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED-------------------------VGKPVSEY 99 (312)
Q Consensus 48 ~~~~~i~f~~-~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~-------------------------~~~~l~~~ 99 (312)
++..+++||. .| ..|....+.|.+++.+|.. .+.++.|.++... ....+++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 4455556664 45 9999988999999999985 3777777765421 12357788
Q ss_pred hCCC----CCCCcEEEEEcCCCCceecc----CCCCCHHHHHHHHHHH
Q 021468 100 FGIT----GEAPKVLAYTGNDDAKKHIL----DGELTLDKIKTFGEDF 139 (312)
Q Consensus 100 ~~v~----~~~~P~~~~~~~~~~~~~~~----~g~~~~~~i~~fi~~~ 139 (312)
||+. +...|..++++.+....+.. ...++.+++.+.+...
T Consensus 116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 8885 22236777777665322222 2235666666666654
No 383
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=87.10 E-value=1.1 Score=34.95 Aligned_cols=49 Identities=6% Similarity=0.161 Sum_probs=33.4
Q ss_pred EEEEEcC------CChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCC----CCCceEEE
Q 021468 181 LLEIYAP------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKS----DGFPTILF 237 (312)
Q Consensus 181 lV~f~~~------~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~i----~~~Pt~~~ 237 (312)
+|.|+++ +|++|..++..|... ++.+-.+|++.... + ..+. ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 5677777 899999988888765 46777788876543 1 1222 46777664
No 384
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=86.97 E-value=2 Score=29.99 Aligned_cols=77 Identities=8% Similarity=0.063 Sum_probs=48.8
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc-cccchhhhhCC--CCCCCcEEEEEcCCCCceeccCCCC
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGI--TGEAPKVLAYTGNDDAKKHILDGEL 127 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~-~~~~l~~~~~v--~~~~~P~~~~~~~~~~~~~~~~g~~ 127 (312)
+++|..+| +.|.++...|.++..++.+ +.+..+|..... ....+....|- ... |.+++ + +. . . -
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~-i~~~~idi~~~~~~~~~l~~~~g~~~~tV--P~ifi-~-g~--~--i---g 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERAD-FEFRYIDIHAEGISKADLEKTVGKPVETV--PQIFV-D-EK--H--V---G 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCC-CcEEEEECCCCHHHHHHHHHHhCCCCCCc--CeEEE-C-CE--E--e---c
Confidence 45566677 9999999999998876655 777888876421 01235555553 445 98844 2 21 1 1 2
Q ss_pred CHHHHHHHHHHHh
Q 021468 128 TLDKIKTFGEDFL 140 (312)
Q Consensus 128 ~~~~i~~fi~~~l 140 (312)
..++|.+++++..
T Consensus 70 G~~dl~~~~~~~~ 82 (86)
T TIGR02183 70 GCTDFEQLVKENF 82 (86)
T ss_pred CHHHHHHHHHhcc
Confidence 3477777777753
No 385
>PRK13599 putative peroxiredoxin; Provisional
Probab=85.73 E-value=5.3 Score=33.39 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=57.2
Q ss_pred EEEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCc------------------------cccchhhhhCCCC---
Q 021468 54 LLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNED------------------------VGKPVSEYFGITG--- 104 (312)
Q Consensus 54 ~f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~------------------------~~~~l~~~~~v~~--- 104 (312)
.|.+.| +.|...++.|.+++.+|.. .+.++.|.++... .+..+++.||+..
T Consensus 35 ~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~ 114 (215)
T PRK13599 35 SHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGK 114 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCC
Confidence 355677 9999999999999999963 2666666655410 1346778888741
Q ss_pred --CCCcEEEEEcCCCCceec--c--CCCCCHHHHHHHHHHH
Q 021468 105 --EAPKVLAYTGNDDAKKHI--L--DGELTLDKIKTFGEDF 139 (312)
Q Consensus 105 --~~~P~~~~~~~~~~~~~~--~--~g~~~~~~i~~fi~~~ 139 (312)
...|+.++++.++...+. | ...+..++|.+.+...
T Consensus 115 ~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 115 GTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred CCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 123777788765533222 2 3347889999888765
No 386
>PRK10329 glutaredoxin-like protein; Provisional
Probab=85.68 E-value=4.1 Score=28.10 Aligned_cols=75 Identities=13% Similarity=0.077 Sum_probs=48.6
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHH
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD 130 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~ 130 (312)
+.+|..++ +.|......|.+ .| |.|-.+|.+........++..|.... |++.+ + + .. .++...+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~g-I~~~~idi~~~~~~~~~~~~~g~~~v--Pvv~i-~-~--~~---~~Gf~~~ 67 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RG-FDFEMINVDRVPEAAETLRAQGFRQL--PVVIA-G-D--LS---WSGFRPD 67 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CC-CceEEEECCCCHHHHHHHHHcCCCCc--CEEEE-C-C--EE---EecCCHH
Confidence 34455566 999999998865 34 78888888863312222344466666 99855 2 2 12 2368899
Q ss_pred HHHHHHHHHhc
Q 021468 131 KIKTFGEDFLE 141 (312)
Q Consensus 131 ~i~~fi~~~l~ 141 (312)
.|.+.+..++.
T Consensus 68 ~l~~~~~~~~~ 78 (81)
T PRK10329 68 MINRLHPAPHA 78 (81)
T ss_pred HHHHHHHhhhh
Confidence 99998887654
No 387
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=85.24 E-value=1.2 Score=28.54 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=35.0
Q ss_pred EEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccc-cchhhhhCCCCCCCcEEEE
Q 021468 53 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVG-KPVSEYFGITGEAPKVLAY 112 (312)
Q Consensus 53 i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~-~~l~~~~~v~~~~~P~~~~ 112 (312)
++|..++ ++|..+...|++. + +.|..+|.+..... ..+.+..|.... |++++
T Consensus 2 ~vy~~~~C~~C~~~~~~L~~~-----~-i~y~~~dv~~~~~~~~~l~~~~g~~~~--P~v~i 55 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEFLDEK-----G-IPYEEVDVDEDEEAREELKELSGVRTV--PQVFI 55 (60)
T ss_dssp EEEESTTSHHHHHHHHHHHHT-----T-BEEEEEEGGGSHHHHHHHHHHHSSSSS--SEEEE
T ss_pred EEEEcCCCcCHHHHHHHHHHc-----C-CeeeEcccccchhHHHHHHHHcCCCcc--CEEEE
Confidence 4555666 9999999998533 2 67788888774212 233344488888 99865
No 388
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=84.73 E-value=1.8 Score=28.24 Aligned_cols=53 Identities=8% Similarity=0.085 Sum_probs=34.4
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCcc-ccchhhhhCCCCCCCcEEEE
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAY 112 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~-~~~l~~~~~v~~~~~P~~~~ 112 (312)
+++|..+| +.|+.+.+.|.+.. +.|..+|...... ...+.+..|.... |++.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~~~~~--P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSGWPTV--PQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhCCCCc--CEEEE
Confidence 45667788 99999999988765 6677788876321 1222333455555 87743
No 389
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=83.94 E-value=2.6 Score=28.69 Aligned_cols=54 Identities=7% Similarity=0.041 Sum_probs=35.9
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc--cccchhhhhCCCCCCCcEEE
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--VGKPVSEYFGITGEAPKVLA 111 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~--~~~~l~~~~~v~~~~~P~~~ 111 (312)
+++|+.+| +.|..+.+.|.++... ..+..++.+... ....+.+..|.... |.++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~g~~~~--P~v~ 58 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK----PAVVELDQHEDGSEIQDYLQELTGQRTV--PNVF 58 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC----cEEEEEeCCCChHHHHHHHHHHhCCCCC--CeEE
Confidence 56777888 9999999999987763 445566655421 00134455677777 9873
No 390
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=83.22 E-value=12 Score=27.91 Aligned_cols=87 Identities=13% Similarity=0.187 Sum_probs=59.7
Q ss_pred ccEEEEEeeC---CchhhHHHHHHHHHHHcCCe-EEEEEEeCCCCcccc-----------chhhhhCCCCCCCcEEEEEc
Q 021468 50 KNQLLLFAVS---NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGK-----------PVSEYFGITGEAPKVLAYTG 114 (312)
Q Consensus 50 ~~~i~f~~~~---~~c~~~~~~~~~la~~~~~~-i~f~~vd~~~~~~~~-----------~l~~~~~v~~~~~P~~~~~~ 114 (312)
..++++|++. ...+.....+.+..+.+.++ |.+..+-.... .. .+.+.|++.......+ +..
T Consensus 10 ~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~--~~~~~~~~~~~~~~lr~~l~~~~~~f~~v-LiG 86 (118)
T PF13778_consen 10 NRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGA--RSPGKPLSPEDIQALRKRLRIPPGGFTVV-LIG 86 (118)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcc--ccccCcCCHHHHHHHHHHhCCCCCceEEE-EEe
Confidence 5577788876 44677778888877777763 55555533322 33 6789999875533444 555
Q ss_pred CCCCceeccCCCCCHHHHHHHHHHH
Q 021468 115 NDDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 115 ~~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
.+++.+..+..+.+.++|-..|..+
T Consensus 87 KDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 87 KDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred CCCcEEEecCCCCCHHHHHHHHhCC
Confidence 5556777888999999999999876
No 391
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=83.17 E-value=5.1 Score=26.93 Aligned_cols=73 Identities=11% Similarity=0.087 Sum_probs=40.2
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCCCceEEEEeCCCcccCceeeccCcCHH
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV 257 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~ 257 (312)
+.+|+.+.|+.|+..+-.+... + +.+-.++.+.... ..-....+|++..=..|... +. ....
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----g---i~y~~~~~~~~~~~~~~~~~~~~vP~l~~~~~~~~~---~l----~eS~ 66 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----G---IPYEVVEVNPVSRKEIKWSSYKKVPILRVESGGDGQ---QL----VDSS 66 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----C---CceEEEECCchhHHHHHHhCCCccCEEEECCCCCcc---EE----EcHH
Confidence 4568889999999987555544 2 2232233332111 11233578887653211111 11 3568
Q ss_pred HHHHHHHhcCC
Q 021468 258 ALYKFLKKNAS 268 (312)
Q Consensus 258 ~l~~fi~~~~~ 268 (312)
.|.+||.++++
T Consensus 67 ~I~~yL~~~~~ 77 (77)
T cd03040 67 VIISTLKTYLG 77 (77)
T ss_pred HHHHHHHHHcC
Confidence 88889888753
No 392
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=82.49 E-value=1.3 Score=38.50 Aligned_cols=87 Identities=18% Similarity=0.164 Sum_probs=65.7
Q ss_pred CCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCC
Q 021468 48 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE 126 (312)
Q Consensus 48 ~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~ 126 (312)
..+.-..||..| +..+...|.+.-....|.. +....++-... -+++...+|+++. |++.+....- +..|.|.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-i~h~~vee~~~--lpsv~s~~~~~~~--ps~~~~n~t~--~~~~~~~ 148 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-IQHFAVEESQA--LPSVFSSYGIHSE--PSNLMLNQTC--PASYRGE 148 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc-cccccHHHHhh--cccchhccccccC--Ccceeecccc--chhhccc
Confidence 455667899999 8888889998888888874 33333432221 4688899999999 9887765443 5678899
Q ss_pred CCHHHHHHHHHHHhc
Q 021468 127 LTLDKIKTFGEDFLE 141 (312)
Q Consensus 127 ~~~~~i~~fi~~~l~ 141 (312)
++..+|.+|..+.++
T Consensus 149 r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 149 RDLASLVNFYTEITP 163 (319)
T ss_pred ccHHHHHHHHHhhcc
Confidence 999999999999876
No 393
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=82.38 E-value=9.2 Score=32.26 Aligned_cols=57 Identities=12% Similarity=0.024 Sum_probs=41.8
Q ss_pred CCceEEeCCCc---ccccccCCCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEe
Q 021468 30 LPLVTIFTREN---APSVFESPIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQ 86 (312)
Q Consensus 30 ~~~v~~lt~~~---~~~~~~~~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd 86 (312)
+..+..++... +-++.+.+++.++-|=+-. ++...-.+.|++++++|.+.+.|..|-
T Consensus 81 ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VY 141 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVY 141 (237)
T ss_pred CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhh
Confidence 44666776666 3446677777777787776 777888899999999999865566555
No 394
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=82.17 E-value=9.8 Score=27.71 Aligned_cols=86 Identities=20% Similarity=0.251 Sum_probs=51.0
Q ss_pred ccEEEEEeeC--CchhhHHHHHHHHHHHcC------C--e--EEEEEEeCCCCccccchhhhh-CCCCCCCcEEEEEcCC
Q 021468 50 KNQLLLFAVS--NDSEKLLPVFEEAAKSFK------G--K--LIFVYVQMDNEDVGKPVSEYF-GITGEAPKVLAYTGND 116 (312)
Q Consensus 50 ~~~i~f~~~~--~~c~~~~~~~~~la~~~~------~--~--i~f~~vd~~~~~~~~~l~~~~-~v~~~~~P~~~~~~~~ 116 (312)
+.+|+|-... +.-+...+.+..+|.++. | . +-|+..|.+ -...++.| |.... -|.+++.+-.
T Consensus 16 p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede----~tdsLRDf~nL~d~-~P~LviLDip 90 (116)
T cd03071 16 PCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDD----MTDSLRDYTNLPEA-APLLTILDMS 90 (116)
T ss_pred ceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccch----HHHHHHHhcCCCcc-CceEEEEecc
Confidence 3344444333 567888888877776553 1 1 333333322 22344444 55433 5888887765
Q ss_pred CCceeccC-CCCCHHHHHHHHHHHh
Q 021468 117 DAKKHILD-GELTLDKIKTFGEDFL 140 (312)
Q Consensus 117 ~~~~~~~~-g~~~~~~i~~fi~~~l 140 (312)
....|... ..+|.+.+.+|+.+++
T Consensus 91 ~r~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 91 ARAKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred ccceEeCchHhcCHHHHHHHHHHhh
Confidence 54455543 4589999999999985
No 395
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=82.04 E-value=5.3 Score=27.67 Aligned_cols=60 Identities=17% Similarity=0.199 Sum_probs=43.3
Q ss_pred EEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCcc-----------------------------ccchhhhhCC
Q 021468 53 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-----------------------------GKPVSEYFGI 102 (312)
Q Consensus 53 i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~-----------------------------~~~l~~~~~v 102 (312)
++|++.. ++|..+.+.+.++.....+++.|..+...-... ...+...+|+
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 81 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALGV 81 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCC
Confidence 4567777 999999999999987777777777776543220 1235577899
Q ss_pred CCCCCcEEEEEc
Q 021468 103 TGEAPKVLAYTG 114 (312)
Q Consensus 103 ~~~~~P~~~~~~ 114 (312)
.+. |++++.+
T Consensus 82 ~g~--Pt~v~~~ 91 (98)
T cd02972 82 TGT--PTFVVNG 91 (98)
T ss_pred CCC--CEEEECC
Confidence 888 9997754
No 396
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=80.83 E-value=3.3 Score=27.63 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=40.5
Q ss_pred EEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHH
Q 021468 54 LLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKI 132 (312)
Q Consensus 54 ~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i 132 (312)
+|..++ +.|+.....|.+. + +.|..+|.+............|.... |++.+ +++ ...++.+.+.|
T Consensus 3 ly~~~~Cp~C~~ak~~L~~~-----~-i~~~~~di~~~~~~~~~~~~~g~~~v--P~v~~-~g~-----~~~~G~~~~~~ 68 (72)
T TIGR02194 3 VYSKNNCVQCKMTKKALEEH-----G-IAFEEINIDEQPEAIDYVKAQGFRQV--PVIVA-DGD-----LSWSGFRPDKL 68 (72)
T ss_pred EEeCCCCHHHHHHHHHHHHC-----C-CceEEEECCCCHHHHHHHHHcCCccc--CEEEE-CCC-----cEEeccCHHHH
Confidence 344566 9999999998752 3 77788888763212222333476666 98844 322 12345777666
Q ss_pred HH
Q 021468 133 KT 134 (312)
Q Consensus 133 ~~ 134 (312)
.+
T Consensus 69 ~~ 70 (72)
T TIGR02194 69 KA 70 (72)
T ss_pred Hh
Confidence 54
No 397
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=80.82 E-value=7.6 Score=33.12 Aligned_cols=70 Identities=16% Similarity=0.092 Sum_probs=44.0
Q ss_pred CeEEEeCccchhhhhcCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCCCceEEEEe
Q 021468 160 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 239 (312)
Q Consensus 160 ~v~~l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~i~~~Pt~~~~~ 239 (312)
....++..+ +..++|+.+++.-+-||+.|...+-.+..+-.+|.+- .+....-|..+ .-..+|++.|..
T Consensus 45 ~~~kvsn~d----~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~-~l~~~~S~~~d------~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 45 NFFKVSNQD----LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF-SLEYHYSDPYD------NYPNTPTLIFNN 113 (249)
T ss_pred ceeeecCcc----cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe-eeEEeecCccc------CCCCCCeEEEec
Confidence 444555443 3357899999999999999988877766666666552 23333322211 124678877764
Q ss_pred C
Q 021468 240 A 240 (312)
Q Consensus 240 ~ 240 (312)
.
T Consensus 114 ~ 114 (249)
T PF06053_consen 114 Y 114 (249)
T ss_pred C
Confidence 4
No 398
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=80.64 E-value=6.8 Score=26.45 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=38.5
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc--cc---cC-CCCCCceEEEEeCCCcccCceeeccCc
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HH---RA-KSDGFPTILFFPAGNKSFDPINVDVDR 254 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~--~~---~~-~i~~~Pt~~~~~~g~~~~~~~~y~g~~ 254 (312)
+.+++.++|+.|.+.+-.+.+.. +.+-.+++.... .. .. ....+|++..-.+|.. . .
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g--------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~-----l----~ 64 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE--------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ-----M----F 64 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC--------CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeE-----E----E
Confidence 45677789999998776555552 333334444322 11 22 3357898753212211 1 3
Q ss_pred CHHHHHHHHHhc
Q 021468 255 TVVALYKFLKKN 266 (312)
Q Consensus 255 ~~~~l~~fi~~~ 266 (312)
....|.+||.+.
T Consensus 65 es~~I~~yL~~~ 76 (77)
T cd03041 65 ESADIVKYLFKT 76 (77)
T ss_pred cHHHHHHHHHHh
Confidence 568888888764
No 399
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=78.79 E-value=6 Score=26.27 Aligned_cols=68 Identities=10% Similarity=0.157 Sum_probs=41.3
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHH
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD 130 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~ 130 (312)
+++|..++ +.|.+....|.+. + +.|..+|.+.......+....|.... |.+.+ + |. .. | ..+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~-i~~~~~~v~~~~~~~~~~~~~g~~~v--P~ifi-~-g~--~i---g--g~~ 65 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----G-ISYEEIPLGKDITGRSLRAVTGAMTV--PQVFI-D-GE--LI---G--GSD 65 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----C-CCcEEEECCCChhHHHHHHHhCCCCc--CeEEE-C-CE--EE---e--CHH
Confidence 45566667 9999999988853 2 66777787664312233344577767 98843 2 22 11 2 366
Q ss_pred HHHHHH
Q 021468 131 KIKTFG 136 (312)
Q Consensus 131 ~i~~fi 136 (312)
+|.+|+
T Consensus 66 ~l~~~l 71 (72)
T cd03029 66 DLEKYF 71 (72)
T ss_pred HHHHHh
Confidence 676665
No 400
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=78.66 E-value=2 Score=31.26 Aligned_cols=79 Identities=9% Similarity=0.059 Sum_probs=43.7
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--c----cCCCCCCceEEEEe-CCCcccCceee--c
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H----RAKSDGFPTILFFP-AGNKSFDPINV--D 251 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~----~~~i~~~Pt~~~~~-~g~~~~~~~~y--~ 251 (312)
+..|+.++|+.|+.....|++. ++.+-.+|+..... . -.+-.+.+.--++. .+... +-..- .
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~-~~l~~~~~ 71 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPY-RKLGLADK 71 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchH-HHcCCccc
Confidence 3578899999999987666664 35555566655433 1 11222322222332 22211 11111 2
Q ss_pred cCcCHHHHHHHHHhcCC
Q 021468 252 VDRTVVALYKFLKKNAS 268 (312)
Q Consensus 252 g~~~~~~l~~fi~~~~~ 268 (312)
..++.+++.++|.++-.
T Consensus 72 ~~ls~~e~~~~l~~~p~ 88 (105)
T cd02977 72 DELSDEEALELMAEHPK 88 (105)
T ss_pred cCCCHHHHHHHHHhCcC
Confidence 35778999999988843
No 401
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.23 E-value=2.3 Score=30.49 Aligned_cols=52 Identities=17% Similarity=0.277 Sum_probs=33.1
Q ss_pred cCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcccccC---CCCCCceE-EEEeCCCcc
Q 021468 186 APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA---KSDGFPTI-LFFPAGNKS 244 (312)
Q Consensus 186 ~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~---~i~~~Pt~-~~~~~g~~~ 244 (312)
.|.|++..+...++.... -+.|+.+|+-.++.-+- ....+||+ -+|.+|.-+
T Consensus 27 ~P~CGFS~~~vqiL~~~g-------~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfv 82 (105)
T COG0278 27 FPQCGFSAQAVQILSACG-------VVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFV 82 (105)
T ss_pred CCCCCccHHHHHHHHHcC-------CcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEe
Confidence 377888877666555541 16788889888766222 23466776 566677554
No 402
>PHA03075 glutaredoxin-like protein; Provisional
Probab=76.77 E-value=2.1 Score=31.52 Aligned_cols=30 Identities=20% Similarity=0.482 Sum_probs=26.5
Q ss_pred CcEEEEEEcCCChhhhcchHHHHHHHHHhc
Q 021468 178 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 207 (312)
Q Consensus 178 k~~lV~f~~~~C~~C~~~~~~~~~la~~~~ 207 (312)
|.++|+|-.|.|+-|.....++.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 578999999999999999999988887764
No 403
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=76.77 E-value=7.8 Score=25.53 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=15.0
Q ss_pred EEEcCCChhhhcchHHHHHH
Q 021468 183 EIYAPWCGHCQAFEPTYNKL 202 (312)
Q Consensus 183 ~f~~~~C~~C~~~~~~~~~l 202 (312)
+++.++|++|.+.+-.+...
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~ 22 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK 22 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc
Confidence 57788999999877555544
No 404
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=75.83 E-value=11 Score=25.04 Aligned_cols=53 Identities=15% Similarity=0.170 Sum_probs=35.0
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCcc-ccchhhhhCCCCCCCcEEEE
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAY 112 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~-~~~l~~~~~v~~~~~P~~~~ 112 (312)
+++|..++ +.|+++...|++. + +.|..+|...... ...+.+..|-... |.+++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----g-i~~~~~di~~~~~~~~el~~~~g~~~v--P~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----G-LPYVEINIDIFPERKAELEERTGSSVV--PQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----C-CceEEEECCCCHHHHHHHHHHhCCCCc--CEEEE
Confidence 45666777 9999999998863 3 6777888876321 1234455566556 98844
No 405
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=75.43 E-value=14 Score=24.68 Aligned_cols=70 Identities=11% Similarity=0.155 Sum_probs=42.9
Q ss_pred EEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCCCceEEEEeCCCcccCceeeccCcCHHHH
Q 021468 183 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVAL 259 (312)
Q Consensus 183 ~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l 259 (312)
+++.++|+.|+++.-.+.. ++. .+.+..++...... .......+|++. .+|..+ .+...|
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~-----~~i-~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l---------~dS~~I 63 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE-----KGI-PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL---------TDSAAI 63 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH-----HTE-EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE---------ESHHHH
T ss_pred CCCcCCChHHHHHHHHHHH-----cCC-eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE---------eCHHHH
Confidence 4678999999887644433 332 34555555444322 122345789986 444432 367899
Q ss_pred HHHHHhcCCC
Q 021468 260 YKFLKKNASI 269 (312)
Q Consensus 260 ~~fi~~~~~~ 269 (312)
.+||.++.+.
T Consensus 64 ~~yL~~~~~~ 73 (75)
T PF13417_consen 64 IEYLEERYPG 73 (75)
T ss_dssp HHHHHHHSTS
T ss_pred HHHHHHHcCC
Confidence 9999988653
No 406
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=73.41 E-value=7.6 Score=27.92 Aligned_cols=55 Identities=11% Similarity=0.027 Sum_probs=34.2
Q ss_pred ccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchh----hhhCCCCCCCcEEEE
Q 021468 50 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVS----EYFGITGEAPKVLAY 112 (312)
Q Consensus 50 ~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~----~~~~v~~~~~P~~~~ 112 (312)
..+++|..+| +.|.++...|.+.. +.|..+|.+..+....+. +..|.... |.+++
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tv--P~Vfi 67 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAV--PAVFV 67 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCc--CeEEE
Confidence 4466677777 99999999888663 445566666533123332 22355666 98833
No 407
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=71.43 E-value=4.3 Score=29.91 Aligned_cols=77 Identities=14% Similarity=0.254 Sum_probs=43.5
Q ss_pred EEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc----CCCCCCceEEEEeCCCcccCceeecc---
Q 021468 182 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR----AKSDGFPTILFFPAGNKSFDPINVDV--- 252 (312)
Q Consensus 182 V~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~----~~i~~~Pt~~~~~~g~~~~~~~~y~g--- 252 (312)
..|+.++|+.|+.....|++- ++.|-.+|...... .. ....+.|.--+++......+-....+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 73 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLP 73 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccc
Confidence 468899999999987666653 35666667665543 11 22334555444433222111111211
Q ss_pred CcCHHHHHHHHHhc
Q 021468 253 DRTVVALYKFLKKN 266 (312)
Q Consensus 253 ~~~~~~l~~fi~~~ 266 (312)
..+.+++++.|.++
T Consensus 74 ~~s~~e~~~~l~~~ 87 (111)
T cd03036 74 SLSEEEALELLSSD 87 (111)
T ss_pred cCCHHHHHHHHHhC
Confidence 34667788888887
No 408
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.96 E-value=4.1 Score=27.49 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=17.1
Q ss_pred EEEEcCCChhhhcchHHHHHH
Q 021468 182 LEIYAPWCGHCQAFEPTYNKL 202 (312)
Q Consensus 182 V~f~~~~C~~C~~~~~~~~~l 202 (312)
++|++..|+.|..+...+.++
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl 25 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL 25 (85)
T ss_pred eeeccccCcchHHHHHHHHHc
Confidence 789999999998776666655
No 409
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=70.63 E-value=9.9 Score=29.83 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=33.0
Q ss_pred CCcE-EEEEEcCCChhhhcc-hHHHHHHHHHhcCCCcE-EEEEEeCCCccc
Q 021468 177 SKDV-LLEIYAPWCGHCQAF-EPTYNKLAKHLRGVDSI-VIAKMDGTTNEH 224 (312)
Q Consensus 177 ~k~~-lV~f~~~~C~~C~~~-~~~~~~la~~~~~~~~v-~~~~vd~~~~~~ 224 (312)
++.+ |++|...||+.|... .+.|.+...+|... ++ .+..+..+....
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-g~~~V~~iS~D~~~~ 78 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK-GVDEVICVSVNDPFV 78 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-CCCEEEEEECCCHHH
Confidence 3444 445557999999987 88999999999764 34 356666665443
No 410
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=70.26 E-value=16 Score=24.17 Aligned_cols=53 Identities=6% Similarity=0.056 Sum_probs=33.0
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc-cccchhhhhCCC-CCCCcEEEE
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGIT-GEAPKVLAY 112 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~-~~~~l~~~~~v~-~~~~P~~~~ 112 (312)
+++|..++ +.|..+...|.+. + +.|..+|.+... ....+.+..|.. .. |.+++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~-i~~~~i~i~~~~~~~~~~~~~~~~~~~v--P~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----G-VDYEEIDVDGDPALREEMINRSGGRRTV--PQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----C-CcEEEEECCCCHHHHHHHHHHhCCCCcc--CEEEE
Confidence 34555677 9999999998863 3 667777776631 012333445655 55 98843
No 411
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=69.69 E-value=16 Score=24.65 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=41.4
Q ss_pred EEEee-C-CchhhHHHHHHHHHHHc-CCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEE
Q 021468 54 LLFAV-S-NDSEKLLPVFEEAAKSF-KGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLA 111 (312)
Q Consensus 54 ~f~~~-~-~~c~~~~~~~~~la~~~-~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~ 111 (312)
.+|.. . .........++++-+++ .+...+-.+|..+ ++.++..++|-.. |+++
T Consensus 5 ~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~---~P~lAe~~~ivAt--PtLv 60 (72)
T cd02978 5 RLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK---QPQLAEEDKIVAT--PTLV 60 (72)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc---CHhHHhhCCEEEe--chhh
Confidence 34443 3 66777777788777765 6789999999998 7899999999988 8874
No 412
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=69.38 E-value=5.5 Score=30.36 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=24.6
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 224 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~ 224 (312)
+..|+.++|+.|+.....|.+- ++.+-.+|+...+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~--------gi~~~~idi~~~~~ 37 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH--------DIPFTERNIFSSPL 37 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCcEEeeccCChh
Confidence 5678899999999877655544 35555566655443
No 413
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=69.22 E-value=9.3 Score=25.18 Aligned_cols=50 Identities=4% Similarity=0.044 Sum_probs=28.7
Q ss_pred EEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCCCceEEE
Q 021468 182 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILF 237 (312)
Q Consensus 182 V~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~i~~~Pt~~~ 237 (312)
++|+.+||+.|.+.+-.+.+..- .+.+..+|...... .......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 46788999999887655544422 24455555432221 1223457788753
No 414
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=68.82 E-value=3.8 Score=29.91 Aligned_cols=36 Identities=6% Similarity=-0.065 Sum_probs=24.3
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 224 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~ 224 (312)
+.+|+.|+|+.|+.....|.+- ++.+-.+|....+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~--------~i~~~~~di~~~p~ 36 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR--------GVAYTFHDYRKDGL 36 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccCCC
Confidence 3578899999999877655543 35555566655543
No 415
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=68.53 E-value=13 Score=28.87 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=31.6
Q ss_pred ccEEEEEeeC--CchhhHHHHHHHHHHHc--CCeEEEEEEeCCC
Q 021468 50 KNQLLLFAVS--NDSEKLLPVFEEAAKSF--KGKLIFVYVQMDN 89 (312)
Q Consensus 50 ~~~i~f~~~~--~~c~~~~~~~~~la~~~--~~~i~f~~vd~~~ 89 (312)
++.|..|.+. ++|..+.+.+.++-+++ .+++.|..++...
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred CeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 4445555555 99999999999999999 7899999998754
No 416
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=67.61 E-value=19 Score=27.46 Aligned_cols=54 Identities=7% Similarity=0.022 Sum_probs=37.5
Q ss_pred EEEeCCCcccccCCCCCCceEEEEeCCC--------cccCceeeccCcCHHHHHHHHHhcCC
Q 021468 215 AKMDGTTNEHHRAKSDGFPTILFFPAGN--------KSFDPINVDVDRTVVALYKFLKKNAS 268 (312)
Q Consensus 215 ~~vd~~~~~~~~~~i~~~Pt~~~~~~g~--------~~~~~~~y~g~~~~~~l~~fi~~~~~ 268 (312)
+.+.++.....+|+|+.+|++++.+++. .........|..+.+.-.+.+.+...
T Consensus 55 ~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~g~ 116 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQDGD 116 (130)
T ss_pred CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHhCC
Confidence 3445555555899999999999998774 00012255688888888888876654
No 417
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=67.07 E-value=12 Score=28.61 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=27.5
Q ss_pred ccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeC
Q 021468 50 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQM 87 (312)
Q Consensus 50 ~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~ 87 (312)
..+++|+..+ ++|..+.+.+.++..++. ++.+..++.
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~~ 44 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFKEF 44 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEEeC
Confidence 4455667667 999999999999887774 466666554
No 418
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=66.42 E-value=16 Score=29.24 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=34.5
Q ss_pred CCCcEEEEEEcCCCh-hhhcchHHHHHHHHHhcCC-CcEEEEEEeCCCcc
Q 021468 176 ESKDVLLEIYAPWCG-HCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE 223 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~-~C~~~~~~~~~la~~~~~~-~~v~~~~vd~~~~~ 223 (312)
.++.++|.|.-+.|+ .|-.+...+.++.+.+... ..+.+..|.++...
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~ 100 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPER 100 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTT
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCC
Confidence 578999998888886 5887777788877776643 35777777777553
No 419
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=65.15 E-value=7 Score=29.05 Aligned_cols=77 Identities=13% Similarity=0.063 Sum_probs=43.1
Q ss_pred EEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccC----CCCCC-ceEEEEeCCCcccCceee---c
Q 021468 182 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRA----KSDGF-PTILFFPAGNKSFDPINV---D 251 (312)
Q Consensus 182 V~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~----~i~~~-Pt~~~~~~g~~~~~~~~y---~ 251 (312)
..|+.++|+.|+.....+.+- ++.+-.+|...... .++ ...+. +.-++=+.|... +-... .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~-k~l~~~~~~ 72 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSY-RALNTSNTF 72 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcch-hhCCchhhc
Confidence 468899999999987766662 35666667665443 111 22222 222333333322 11111 1
Q ss_pred cCcCHHHHHHHHHhcC
Q 021468 252 VDRTVVALYKFLKKNA 267 (312)
Q Consensus 252 g~~~~~~l~~fi~~~~ 267 (312)
..++.++++++|.++-
T Consensus 73 ~~ls~~e~~~~i~~~p 88 (117)
T TIGR01617 73 LDLSDKEALELLAEDP 88 (117)
T ss_pred ccCCHHHHHHHHHhCc
Confidence 3467788888888874
No 420
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=64.28 E-value=14 Score=29.22 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=40.9
Q ss_pred CCCccEEEEEeeC--CchhhHHHHHHHHHHHcCC-eEEEEEEeCCCCccccchhhhhCCC
Q 021468 47 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGIT 103 (312)
Q Consensus 47 ~~~~~~i~f~~~~--~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~~~~~~~l~~~~~v~ 103 (312)
.++.++++||=.. +-|..-+-.|++...+|+. ...++-|-.+...-++.+++++|+.
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~ 88 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLT 88 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCC
Confidence 3445566666555 8899999999999999985 3555555655543378888888885
No 421
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=64.09 E-value=22 Score=23.21 Aligned_cols=67 Identities=9% Similarity=0.018 Sum_probs=36.5
Q ss_pred EEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc-CCCCCCceEEEEeCCCcccCceeeccCcCHHH
Q 021468 182 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR-AKSDGFPTILFFPAGNKSFDPINVDVDRTVVA 258 (312)
Q Consensus 182 V~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~-~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~ 258 (312)
.+|+.++|+.|+...-.+...+-. +....+|...... .+ .....+|++. .+|.. . .....
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~------~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~-----l----~es~a 64 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS------VEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV-----L----YESRI 64 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc------cEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE-----E----EcHHH
Confidence 567889999999887665544322 3333344332221 12 2234778664 22221 1 34677
Q ss_pred HHHHHHh
Q 021468 259 LYKFLKK 265 (312)
Q Consensus 259 l~~fi~~ 265 (312)
|.+||.+
T Consensus 65 I~~yL~~ 71 (73)
T cd03059 65 IMEYLDE 71 (73)
T ss_pred HHHHHHh
Confidence 7777765
No 422
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=64.07 E-value=17 Score=28.68 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=32.9
Q ss_pred CCCcEEEEEEc-CCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021468 176 ESKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 221 (312)
Q Consensus 176 ~~k~~lV~f~~-~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 221 (312)
.++.++|+||- .+++.|-...-.|.+...+|... +..+.-|..+.
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-~a~V~GIS~Ds 74 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-GAVVLGISPDS 74 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-CCEEEEEeCCC
Confidence 46788999995 77888988888888888888775 34444455544
No 423
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=64.07 E-value=12 Score=30.21 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=25.5
Q ss_pred EEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEe
Q 021468 183 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 218 (312)
Q Consensus 183 ~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd 218 (312)
+|..|.|+.|-.+.|.|.++...+... +.+-.+-
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~--i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK--IEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT--EEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc--EEEEEEE
Confidence 689999999999999999999999873 5444443
No 424
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=64.02 E-value=13 Score=29.41 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=32.3
Q ss_pred CCccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCC
Q 021468 48 PIKNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMD 88 (312)
Q Consensus 48 ~~~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~ 88 (312)
....++.|+... ++|..+.+.+.++..++.+++.|..+...
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 345566677766 99999999999999999888887766654
No 425
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=62.01 E-value=11 Score=27.79 Aligned_cols=78 Identities=9% Similarity=0.129 Sum_probs=42.1
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc----CCCCCCceEEEE-eCCCcccCceeec-c
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR----AKSDGFPTILFF-PAGNKSFDPINVD-V 252 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~----~~i~~~Pt~~~~-~~g~~~~~~~~y~-g 252 (312)
+.+|+.++|+.|+.....|.+. ++.+-.+|...... .. +...+.|.--++ +.|... +-.... .
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~-k~l~~~~~ 72 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH--------QIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAF-KNLNIDID 72 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHH-HHcCCCcc
Confidence 4578889999999987666653 35555566655443 11 121222332233 333221 111111 2
Q ss_pred CcCHHHHHHHHHhcC
Q 021468 253 DRTVVALYKFLKKNA 267 (312)
Q Consensus 253 ~~~~~~l~~fi~~~~ 267 (312)
..+.+++++.+.++-
T Consensus 73 ~ls~~e~i~~l~~~p 87 (115)
T cd03032 73 ELSLSELIRLISEHP 87 (115)
T ss_pred cCCHHHHHHHHHhCh
Confidence 456778888888873
No 426
>PRK12559 transcriptional regulator Spx; Provisional
Probab=61.93 E-value=10 Score=28.90 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=23.8
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 224 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~ 224 (312)
+..|+.++|+.|+.....|.+- ++.+-.+|...++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------gi~~~~~di~~~~~ 37 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN--------QIDYTEKNIVSNSM 37 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCeEEEEeeCCcC
Confidence 5678899999999876555543 34555556555443
No 427
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=60.96 E-value=26 Score=24.62 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=48.5
Q ss_pred EEEeeC-CchhhHHHHHHHHHH-HcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCC
Q 021468 54 LLFAVS-NDSEKLLPVFEEAAK-SFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGEL 127 (312)
Q Consensus 54 ~f~~~~-~~c~~~~~~~~~la~-~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~ 127 (312)
+|++.. ...+.....+.++-+ .+.|...+-.+|..+ ++.++..++|-.. |+++=..... ..+.-|+.
T Consensus 8 Lyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~---qP~lAE~~~IvAT--PtLIK~~P~P--~rriiGdl 76 (87)
T TIGR02654 8 LYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLK---NPQLAEEDKILAT--PTLSKILPPP--VRKIIGDL 76 (87)
T ss_pred EEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc---CHhHHhHCCEEEe--cHHhhcCCCC--cceeeccc
Confidence 355666 778888888888766 556789999999988 7899999999988 8875443333 22345554
No 428
>PRK09301 circadian clock protein KaiB; Provisional
Probab=60.73 E-value=31 Score=25.03 Aligned_cols=67 Identities=19% Similarity=0.183 Sum_probs=48.7
Q ss_pred EEEeeC-CchhhHHHHHHHHHH-HcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCC
Q 021468 54 LLFAVS-NDSEKLLPVFEEAAK-SFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGEL 127 (312)
Q Consensus 54 ~f~~~~-~~c~~~~~~~~~la~-~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~ 127 (312)
+|++.. ...+.....+.++-+ .+.|...+-.||..+ ++.++..++|-.. |+++=..... ..+..|+.
T Consensus 11 LyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~---qPelAE~~~IvAT--PTLIK~~P~P--~rriiGDl 79 (103)
T PRK09301 11 LYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLK---NPQLAEEDKILAT--PTLAKILPPP--VRKIIGDL 79 (103)
T ss_pred EEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEccc---CHhHHhHCCeEEe--cHHhhcCCCC--cceeeccc
Confidence 456666 777888888888765 556788999999988 7899999999988 8875433333 22345655
No 429
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.95 E-value=22 Score=29.86 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=35.5
Q ss_pred chhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHHhcCCC
Q 021468 95 PVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKL 144 (312)
Q Consensus 95 ~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~l~~~~ 144 (312)
..++++||++. |+|+| ++ +|...|..+.+.+..-|++.++.+-
T Consensus 175 ~~A~e~gI~gV--P~fv~---d~--~~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGV--PTFVF---DG--KYAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccC--ceEEE---cC--cEeecCCCCHHHHHHHHHHHHhccc
Confidence 56789999999 99977 22 4566899999999999999988654
No 430
>PHA03050 glutaredoxin; Provisional
Probab=57.43 E-value=13 Score=27.26 Aligned_cols=58 Identities=5% Similarity=0.024 Sum_probs=36.5
Q ss_pred ccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccc----cchhhhhCCCCCCCcEEEE
Q 021468 50 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVG----KPVSEYFGITGEAPKVLAY 112 (312)
Q Consensus 50 ~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~----~~l~~~~~v~~~~~P~~~~ 112 (312)
..+++|..+| +.|......|.+..-... .|..+|.+..... ..+.+.-|-+.. |.+++
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tV--P~IfI 75 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTV--PRIFF 75 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCc--CEEEE
Confidence 4477778888 999999999987654332 3555666542111 134455566666 98844
No 431
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=56.98 E-value=7.6 Score=26.27 Aligned_cols=52 Identities=6% Similarity=0.073 Sum_probs=31.8
Q ss_pred EEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc-cccchhhhhCCCCCCCcEEEE
Q 021468 53 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAY 112 (312)
Q Consensus 53 i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~-~~~~l~~~~~v~~~~~P~~~~ 112 (312)
.+|..++ +.|......|.+.. +.|..+|.+... .-..+.+..|.... |++.+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~------i~~~~~di~~~~~~~~~~~~~~g~~~v--P~i~i 55 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKG------VTFTEIRVDGDPALRDEMMQRSGRRTV--PQIFI 55 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcC------CCcEEEEecCCHHHHHHHHHHhCCCCc--CEEEE
Confidence 3455566 99999999998643 556666666521 11233344466556 98844
No 432
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=54.76 E-value=28 Score=21.89 Aligned_cols=50 Identities=10% Similarity=0.002 Sum_probs=28.1
Q ss_pred EEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc----ccCCCCCCceEEE
Q 021468 182 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILF 237 (312)
Q Consensus 182 V~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~----~~~~i~~~Pt~~~ 237 (312)
.+|+.++|+.|...+..+....- .+....++...... .......+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 36778999999987765555522 23333444332211 1234557887754
No 433
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=53.10 E-value=78 Score=29.17 Aligned_cols=91 Identities=12% Similarity=0.180 Sum_probs=56.5
Q ss_pred CCCccEEEEEeeC-CchhhHH-HHHHH--HHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceec
Q 021468 47 SPIKNQLLLFAVS-NDSEKLL-PVFEE--AAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHI 122 (312)
Q Consensus 47 ~~~~~~i~f~~~~-~~c~~~~-~~~~~--la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~ 122 (312)
.++..+|+|.+.. ...+.+. -.|.+ ++..+...+.-++|+..... ...+..-|.+... |+++++...+..-..
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~a-a~qFs~IYp~v~v--Ps~ffIg~sGtpLev 93 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVA-ATQFSAIYPYVSV--PSIFFIGFSGTPLEV 93 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchh-hhhhhhhcccccc--cceeeecCCCceeEE
Confidence 3445556666666 6666665 24433 33344445666777766644 4566676777666 888777665433334
Q ss_pred cCCCCCHHHHHHHHHHHh
Q 021468 123 LDGELTLDKIKTFGEDFL 140 (312)
Q Consensus 123 ~~g~~~~~~i~~fi~~~l 140 (312)
..|..+.++|..-|++.+
T Consensus 94 itg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 94 ITGFVTADELASSIEKVW 111 (506)
T ss_pred eeccccHHHHHHHHHHHH
Confidence 578888888888877765
No 434
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=52.66 E-value=35 Score=23.31 Aligned_cols=52 Identities=4% Similarity=0.078 Sum_probs=32.1
Q ss_pred EEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc--cccchhhhh-CCCCCCCcEEEE
Q 021468 53 LLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED--VGKPVSEYF-GITGEAPKVLAY 112 (312)
Q Consensus 53 i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~--~~~~l~~~~-~v~~~~~P~~~~ 112 (312)
++|-.++ +.|.+....|.+.. +.|..+|.+... ..+...+.. |.+.. |.+++
T Consensus 4 ~iyt~~~CPyC~~ak~~L~~~g------~~~~~i~~~~~~~~~~~~~~~~~~g~~tv--P~I~i 59 (80)
T COG0695 4 TIYTKPGCPYCKRAKRLLDRKG------VDYEEIDVDDDEPEEAREMVKRGKGQRTV--PQIFI 59 (80)
T ss_pred EEEECCCCchHHHHHHHHHHcC------CCcEEEEecCCcHHHHHHHHHHhCCCCCc--CEEEE
Confidence 3444455 99999999988332 555555655532 123444555 67777 98855
No 435
>PRK10638 glutaredoxin 3; Provisional
Probab=51.17 E-value=38 Score=23.10 Aligned_cols=53 Identities=9% Similarity=0.096 Sum_probs=32.8
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCc-cccchhhhhCCCCCCCcEEEE
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNED-VGKPVSEYFGITGEAPKVLAY 112 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~-~~~~l~~~~~v~~~~~P~~~~ 112 (312)
+.+|..++ +.|.+....|++. + +.+..+|++... ....+.+..|.... |++.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----g-i~y~~~dv~~~~~~~~~l~~~~g~~~v--P~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----G-VSFQEIPIDGDAAKREEMIKRSGRTTV--PQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----C-CCcEEEECCCCHHHHHHHHHHhCCCCc--CEEEE
Confidence 34444456 9999999998864 2 566677776532 01234455566666 98743
No 436
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=50.06 E-value=26 Score=27.40 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=37.8
Q ss_pred CCccEEEEEeeC--CchhhH-HHHHHHHHHHcCCe-E-EEEEEeCCCCccccchhhhhCC
Q 021468 48 PIKNQLLLFAVS--NDSEKL-LPVFEEAAKSFKGK-L-IFVYVQMDNEDVGKPVSEYFGI 102 (312)
Q Consensus 48 ~~~~~i~f~~~~--~~c~~~-~~~~~~la~~~~~~-i-~f~~vd~~~~~~~~~l~~~~~v 102 (312)
++..+++||-.. +.|..- .+.|.+...+|... + .++.|-++...-+..+++++++
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 334455555433 889997 99999999999732 4 4677777664336677888877
No 437
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=49.17 E-value=24 Score=26.90 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=23.9
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH 224 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~ 224 (312)
+..|+.++|+.|+.....|.+- ++.+-.+|....+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------~i~~~~~d~~~~~~ 37 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH--------QLSYKEQNLGKEPL 37 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEECCCCCC
Confidence 4578889999999866444432 45666667665544
No 438
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=49.01 E-value=38 Score=25.02 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHhcCCCcEEEEEEeCCCcccccCCCCCCceEEEEeC
Q 021468 194 AFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPA 240 (312)
Q Consensus 194 ~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~~~~~i~~~Pt~~~~~~ 240 (312)
.+.+.+..+.+........ ..+.++....++|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 4445555555544432112 44555666668999999999999987
No 439
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=48.60 E-value=29 Score=29.24 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=38.8
Q ss_pred cCCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCC--CcEEEEEEeCCC
Q 021468 175 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV--DSIVIAKMDGTT 221 (312)
Q Consensus 175 ~~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~--~~v~~~~vd~~~ 221 (312)
..+..+||-+-..+|..|..-...|+.|-.++.+. .+|.|..||-..
T Consensus 24 ~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~ 72 (238)
T PF04592_consen 24 SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG 72 (238)
T ss_pred cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC
Confidence 35788999999999999999888999998888754 479999998443
No 440
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=48.54 E-value=1.1e+02 Score=25.37 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=41.5
Q ss_pred CCCccEEEEEeeC--CchhhHHHHHHHHHHHcC----CeEEEEEEeCCCCccccchhhhhCC
Q 021468 47 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFK----GKLIFVYVQMDNEDVGKPVSEYFGI 102 (312)
Q Consensus 47 ~~~~~~i~f~~~~--~~c~~~~~~~~~la~~~~----~~i~f~~vd~~~~~~~~~l~~~~~v 102 (312)
.+++++|.|.-.. .-|......+.++-.++. .++.++.|-+|-+++.+++.+.|..
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 6667777776555 779888887777777766 2466777777776667899999988
No 441
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=47.58 E-value=62 Score=21.82 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=41.7
Q ss_pred EEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEE
Q 021468 180 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 237 (312)
Q Consensus 180 ~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~ 237 (312)
.+.+|-+...+........+.++-..+.+ ..+.+-.+|+.+++. ..+++-..||++=
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~-~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLG-GPYELEVIDVLKQPQLAEEDKIVATPTLVK 61 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcC-CcEEEEEEEcccCHhHHhhCCEEEechhhh
Confidence 35556666656677777777777777653 368888889998887 7889999999753
No 442
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=46.75 E-value=70 Score=25.56 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=33.9
Q ss_pred CCCccEEEEEeeC--CchhhHHHHHHHHHHHcCC---eEEEEEEeCCCCccccchhhhh
Q 021468 47 SPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYF 100 (312)
Q Consensus 47 ~~~~~~i~f~~~~--~~c~~~~~~~~~la~~~~~---~i~f~~vd~~~~~~~~~l~~~~ 100 (312)
.++..+|.|.-.. .-|......+.++.+.+.. ++.++.|-.+-+.+-++.+++|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 4556666665555 7798887777777766653 4677777766654455555554
No 443
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.37 E-value=38 Score=28.43 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=32.5
Q ss_pred ccCCCCCCceEEEEeCCCcccCceeeccCcCHHHHHHHHHhcCCCCcc
Q 021468 225 HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK 272 (312)
Q Consensus 225 ~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~~~~~ 272 (312)
.+++|+++|+++| +++ ....|..+.+-+..-|++.+....+
T Consensus 178 ~e~gI~gVP~fv~--d~~-----~~V~Gaq~~~v~~~al~~~~~~~~~ 218 (225)
T COG2761 178 QEMGIRGVPTFVF--DGK-----YAVSGAQPYDVLEDALRQLLAEKAE 218 (225)
T ss_pred HHCCCccCceEEE--cCc-----EeecCCCCHHHHHHHHHHHHhcccc
Confidence 5789999999999 332 2678999999999999998765443
No 444
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=42.93 E-value=59 Score=27.39 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=28.7
Q ss_pred CcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCC
Q 021468 178 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 221 (312)
Q Consensus 178 k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~ 221 (312)
+..++.|....|++|+...+.+.+........ ++.+..+....
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~-~~~~~~~~f~~ 127 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKV-RLVLREFPFLD 127 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCCC-ceEEEEeecCC
Confidence 67899999999999988777777744443332 34444444333
No 445
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=42.89 E-value=82 Score=26.09 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=35.9
Q ss_pred eCccchhhhhcCCCcEEEEEEcCCChh-hhcchHHHHHHHHHhc-CC-CcEEEEEEeCCCc
Q 021468 165 VGNNFDEIVLDESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLR-GV-DSIVIAKMDGTTN 222 (312)
Q Consensus 165 ~~~~f~~~i~~~~k~~lV~f~~~~C~~-C~~~~~~~~~la~~~~-~~-~~v~~~~vd~~~~ 222 (312)
+++.|...-+ .+++++|+|-=+.|+. |-.+...+..+-.++. .. ..+.++.+.++.+
T Consensus 56 ~G~~~~~~~l-~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPe 115 (207)
T COG1999 56 DGKPFTLKDL-KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPE 115 (207)
T ss_pred CCCEeecccc-CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCC
Confidence 3344444332 6788999888788875 8887777777777776 22 2454444444443
No 446
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=41.58 E-value=24 Score=24.72 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=29.2
Q ss_pred eC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccc-cchhhhhCCCCCCCcEEEE
Q 021468 58 VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVG-KPVSEYFGITGEAPKVLAY 112 (312)
Q Consensus 58 ~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~-~~l~~~~~v~~~~~P~~~~ 112 (312)
++ +.|.++...|.+.. +.|..+|....... ..+.+..|-... |.+++
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tv--P~vfi 69 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTF--PQLYV 69 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCC--CEEEE
Confidence 46 88999999888754 56666776542211 233344566666 98843
No 447
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=41.03 E-value=21 Score=23.24 Aligned_cols=21 Identities=5% Similarity=-0.168 Sum_probs=16.3
Q ss_pred EEEEcCCChhhhcchHHHHHH
Q 021468 182 LEIYAPWCGHCQAFEPTYNKL 202 (312)
Q Consensus 182 V~f~~~~C~~C~~~~~~~~~l 202 (312)
.+|+.++|+.|+.++-.+...
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~ 22 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK 22 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc
Confidence 467889999999987666555
No 448
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=39.43 E-value=20 Score=24.89 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=39.2
Q ss_pred CchhhHHHHHHHHHHH-cCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEE
Q 021468 60 NDSEKLLPVFEEAAKS-FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVL 110 (312)
Q Consensus 60 ~~c~~~~~~~~~la~~-~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~ 110 (312)
...+.+...++.+.+. +.+...+-.||..+ ++.++..++|-.. |++
T Consensus 9 ~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~---~P~lAe~~~ivAt--PtL 55 (82)
T PF07689_consen 9 PSSERAIENLRRLCEEYLGGRYELEVIDVLE---QPELAEEDRIVAT--PTL 55 (82)
T ss_dssp HHHHHHHHHHHHHHHCHCTTTEEEEEEETTT---SHSHHTTTEEECH--HHH
T ss_pred hHHHHHHHHHHHHHHhhCCCcEEEEEEEccc---CHhHHhHCCeeec--ceE
Confidence 5567888888888886 56689999999998 7899999999888 887
No 449
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=39.22 E-value=30 Score=25.58 Aligned_cols=35 Identities=11% Similarity=0.068 Sum_probs=23.2
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 223 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~ 223 (312)
+..|+.|.|..|+.....|.+- ++.+-.+|....+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~--------gi~~~~~d~~~~p 36 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA--------GHEVEVRDLLTEP 36 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEeehhcCC
Confidence 4578889999999876555443 3555556655544
No 450
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=39.21 E-value=1.6e+02 Score=21.74 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=32.1
Q ss_pred EEEEEeeC--CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcC
Q 021468 52 QLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGN 115 (312)
Q Consensus 52 ~i~f~~~~--~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~ 115 (312)
+.+.+... +.-......+.+|..+-..... +.. +|.+-++|+|+.. |++++..+
T Consensus 25 ~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~~~---v~I-----dP~~F~~y~I~~V--Pa~V~~~~ 80 (113)
T PF09673_consen 25 VVVVFRGFPDGSFKPTAKAIQELLRKDDPCPG---VQI-----DPRLFRQYNITAV--PAFVVVKD 80 (113)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhccCCCcc---eeE-----ChhHHhhCCceEc--CEEEEEcC
Confidence 33444444 4334444444444444433222 222 5689999999999 99988876
No 451
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=39.13 E-value=37 Score=27.20 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=30.6
Q ss_pred EEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCC
Q 021468 180 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 220 (312)
Q Consensus 180 ~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~ 220 (312)
.|.+|+...|+.|-...+.+.++...+.+. .+.+.-+...
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~-~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDV-EIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTC-EEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-cEEEeccccc
Confidence 478899999999999999999999998431 4555444433
No 452
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=39.10 E-value=1.7e+02 Score=27.16 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=48.8
Q ss_pred CCCcEEEEEEcCCChhhhcchH-HHHH-H-HHHhcCCCcEEEEEEeCCCccc----ccCCCCCCceEEEEe-CCCcccCc
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEP-TYNK-L-AKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFP-AGNKSFDP 247 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~-~~~~-l-a~~~~~~~~v~~~~vd~~~~~~----~~~~i~~~Pt~~~~~-~g~~~~~~ 247 (312)
..+.++|.|.+-.-.....|.. .|.. . +..+.. .++.++++.....+ .-|.+..+|+++|+. .|..+.
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~--~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLe-- 92 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSK--YFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLE-- 92 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhc--ceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeE--
Confidence 3466777777666555555542 2222 2 222222 46667777666555 456788999999984 455443
Q ss_pred eeeccCcCHHHHHHHHH
Q 021468 248 INVDVDRTVVALYKFLK 264 (312)
Q Consensus 248 ~~y~g~~~~~~l~~fi~ 264 (312)
...|....++|..-|.
T Consensus 93 -vitg~v~adeL~~~i~ 108 (506)
T KOG2507|consen 93 -VITGFVTADELASSIE 108 (506)
T ss_pred -EeeccccHHHHHHHHH
Confidence 5567666666655443
No 453
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=39.01 E-value=48 Score=26.59 Aligned_cols=27 Identities=37% Similarity=0.753 Sum_probs=24.7
Q ss_pred EEEEEcCCChhhhcchHHHHHHHHHhc
Q 021468 181 LLEIYAPWCGHCQAFEPTYNKLAKHLR 207 (312)
Q Consensus 181 lV~f~~~~C~~C~~~~~~~~~la~~~~ 207 (312)
+.+|+.+.|+.|-...+.+.++...+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 678999999999999999999999984
No 454
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=37.49 E-value=23 Score=25.33 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=29.4
Q ss_pred eC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccc-cchhhhhCCCCCCCcEEEE
Q 021468 58 VS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVG-KPVSEYFGITGEAPKVLAY 112 (312)
Q Consensus 58 ~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~-~~l~~~~~v~~~~~P~~~~ 112 (312)
+| +.|.++...|.+.. +.|..+|....... ..+.+..|-... |.+.+
T Consensus 25 ~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg~~tv--P~vfi 73 (97)
T TIGR00365 25 PQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSNWPTI--PQLYV 73 (97)
T ss_pred CCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhCCCCC--CEEEE
Confidence 67 99999999988753 45667777542211 133344565556 88844
No 455
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=37.34 E-value=1.9e+02 Score=24.82 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhh----hhCCCC
Q 021468 63 EKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSE----YFGITG 104 (312)
Q Consensus 63 ~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~----~~~v~~ 104 (312)
+.+...|++.+..-.|+|.+-.+|-+. ++...+ .+||..
T Consensus 46 ~~v~~lL~~y~~~s~g~i~v~~iDp~~---~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 46 KQVRDLLDEYARYSPGKIKVEFIDPDE---NPSEAEEKAKEYGIQP 88 (271)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCC---ChHHHHHHHHhcCCCc
Confidence 344445555555555689999999855 334444 488876
No 456
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=34.69 E-value=2.1e+02 Score=21.96 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=56.6
Q ss_pred cCCCcEEEEEEcCCChhhhcchHHH---HHHHHHhcCCCcEEEEEEeCCCccc--------------------ccCCCCC
Q 021468 175 DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH--------------------HRAKSDG 231 (312)
Q Consensus 175 ~~~k~~lV~f~~~~C~~C~~~~~~~---~~la~~~~~~~~v~~~~vd~~~~~~--------------------~~~~i~~ 231 (312)
...|..+|+.+.+....+..+.... +.+..-+++ ++.+-..|++.... ..++...
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~ 96 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQ 96 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCC
Confidence 3468899999988764333332221 333333444 57777778776531 3457899
Q ss_pred CceEEEEeCC-CcccCceeeccCcCHHHHHHHHHhcC
Q 021468 232 FPTILFFPAG-NKSFDPINVDVDRTVVALYKFLKKNA 267 (312)
Q Consensus 232 ~Pt~~~~~~g-~~~~~~~~y~g~~~~~~l~~fi~~~~ 267 (312)
+|.+.+.-.. +...-.-+..|..+.++++.-|.+..
T Consensus 97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 9999888432 22211225779999999998887653
No 457
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=34.05 E-value=64 Score=24.58 Aligned_cols=44 Identities=11% Similarity=0.083 Sum_probs=30.8
Q ss_pred ccchhhhhCCCCCCCcEEEEEcCCC----------CceeccCCCCCHHHHHHHHHH
Q 021468 93 GKPVSEYFGITGEAPKVLAYTGNDD----------AKKHILDGELTLDKIKTFGED 138 (312)
Q Consensus 93 ~~~l~~~~~v~~~~~P~~~~~~~~~----------~~~~~~~g~~~~~~i~~fi~~ 138 (312)
+|.+-++|+|+.. |++++..++. .......|..+.+..++.+.+
T Consensus 60 dP~lF~~f~I~~V--Pa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~ 113 (130)
T TIGR02742 60 DPQWFKQFDITAV--PAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQ 113 (130)
T ss_pred ChHHHhhcCceEc--CEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHH
Confidence 5689999999999 9999987663 112233577776666655554
No 458
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=33.95 E-value=54 Score=22.45 Aligned_cols=35 Identities=17% Similarity=0.404 Sum_probs=21.1
Q ss_pred CCceEEEEeC-CCcccCceeeccCcCHHHHHHHHHhcC
Q 021468 231 GFPTILFFPA-GNKSFDPINVDVDRTVVALYKFLKKNA 267 (312)
Q Consensus 231 ~~Pt~~~~~~-g~~~~~~~~y~g~~~~~~l~~fi~~~~ 267 (312)
.-|++.++.. |+.+ .-+.. ..++.+.+.+||.+++
T Consensus 41 ~~P~L~l~d~~g~~~-E~i~i-~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEV-ERINI-EKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--S-EEEE--SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEE-EEEEc-ccCCHHHHHHHHHHhC
Confidence 4599999974 5544 23333 3589999999999875
No 459
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=33.56 E-value=49 Score=26.46 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=27.9
Q ss_pred cchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHH
Q 021468 94 KPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGE 137 (312)
Q Consensus 94 ~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~ 137 (312)
......+||.+. |++++ +|+ +.+.|....+.|.+.|+
T Consensus 157 ~~~a~~~gv~Gv--P~~vv--~g~---~~~~G~~~~~~l~~~l~ 193 (193)
T PF01323_consen 157 TAEARQLGVFGV--PTFVV--NGK---YRFFGADRLDELEDALQ 193 (193)
T ss_dssp HHHHHHTTCSSS--SEEEE--TTT---EEEESCSSHHHHHHHH-
T ss_pred HHHHHHcCCccc--CEEEE--CCE---EEEECCCCHHHHHHHhC
Confidence 356688999999 99977 332 56788888888887763
No 460
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.08 E-value=1.2e+02 Score=29.93 Aligned_cols=78 Identities=23% Similarity=0.397 Sum_probs=56.8
Q ss_pred EeCccchhhhhcCCCcEEEEEEcCCChhhhcchHH-H--HHHHHHhcCCCcEEEEEEeCCCccc-c-cC--------CCC
Q 021468 164 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH-H-RA--------KSD 230 (312)
Q Consensus 164 l~~~~f~~~i~~~~k~~lV~f~~~~C~~C~~~~~~-~--~~la~~~~~~~~v~~~~vd~~~~~~-~-~~--------~i~ 230 (312)
-+.+.|.+. ...+|+++|-.-.+||-=|.-|... | .++|..++. +++-++||.++-+. . .| +--
T Consensus 31 W~~eAf~~A-~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~tG~G 107 (667)
T COG1331 31 WGEEAFAKA-KEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAITGQG 107 (667)
T ss_pred cCHHHHHHH-HHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHhccCC
Confidence 445667764 4678999999999999999888765 2 567777776 69999999888776 2 22 234
Q ss_pred CCceEEEE-eCCCcc
Q 021468 231 GFPTILFF-PAGNKS 244 (312)
Q Consensus 231 ~~Pt~~~~-~~g~~~ 244 (312)
++|--+|. ++|+..
T Consensus 108 GWPLtVfLTPd~kPF 122 (667)
T COG1331 108 GWPLTVFLTPDGKPF 122 (667)
T ss_pred CCceeEEECCCCcee
Confidence 78875555 766653
No 461
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=32.83 E-value=59 Score=26.75 Aligned_cols=40 Identities=10% Similarity=0.113 Sum_probs=31.6
Q ss_pred CCccEEEEEeeC-CchhhHHHHH---HHHHHHcCCeEEEEEEeC
Q 021468 48 PIKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQM 87 (312)
Q Consensus 48 ~~~~~i~f~~~~-~~c~~~~~~~---~~la~~~~~~i~f~~vd~ 87 (312)
+.+.++.||+-. ++|..+.+.+ ..+.+.+.+.+.|..+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 345677888888 9999999876 888999987777777654
No 462
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=32.23 E-value=2.3e+02 Score=21.72 Aligned_cols=89 Identities=10% Similarity=0.026 Sum_probs=54.1
Q ss_pred CccEEEEEeeC-CchhhHHHHH---HHHHHHcCCeEEEEEEeCCCCccccc----------------hhhhhCCCCCCCc
Q 021468 49 IKNQLLLFAVS-NDSEKLLPVF---EEAAKSFKGKLIFVYVQMDNEDVGKP----------------VSEYFGITGEAPK 108 (312)
Q Consensus 49 ~~~~i~f~~~~-~~c~~~~~~~---~~la~~~~~~i~f~~vd~~~~~~~~~----------------l~~~~~v~~~~~P 108 (312)
+..+|++-.+. ..+..+-... +.+.+-++..+.+..-|.+.++ ++. ..+.++...+ |
T Consensus 22 K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~-~~~~fl~~~~~~~g~~a~~~~~~~~~~~f--P 98 (136)
T cd02990 22 KLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKES-NKARFLSSCTRHFGSVAAQTIRNIKTDQL--P 98 (136)
T ss_pred ceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchh-hhhHHHHhhhhhhhHHHHHHHHhcCcCCC--C
Confidence 34445555555 4444443322 4455566677888888887753 321 3455667777 9
Q ss_pred EEEEEcCCCC---ceeccCCCCCHHHHHHHHHHHh
Q 021468 109 VLAYTGNDDA---KKHILDGELTLDKIKTFGEDFL 140 (312)
Q Consensus 109 ~~~~~~~~~~---~~~~~~g~~~~~~i~~fi~~~l 140 (312)
.+++...... .--...|..+++++..-+...+
T Consensus 99 ~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 99 AILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred eEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 8888865542 1223478999999988777654
No 463
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.72 E-value=77 Score=26.05 Aligned_cols=44 Identities=20% Similarity=0.146 Sum_probs=32.3
Q ss_pred ccchhhhhCCCCCCCcEEEEEcCCCCceecc-CC--CCCHHHHHHHHHHHh
Q 021468 93 GKPVSEYFGITGEAPKVLAYTGNDDAKKHIL-DG--ELTLDKIKTFGEDFL 140 (312)
Q Consensus 93 ~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~-~g--~~~~~~i~~fi~~~l 140 (312)
.+.++++.|+.++ |++++-++|.. +.. .| -.+.+.+..++.+.+
T Consensus 163 ~r~l~~rlg~~Gf--PTl~le~ng~~--~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 163 SRRLMQRLGAAGF--PTLALERNGTM--YVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHHhccCCC--CeeeeeeCCce--EeccCCcccCCcHHHHHHHHHHH
Confidence 3688999999999 99999987763 333 34 256777888777654
No 464
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=31.55 E-value=1.7e+02 Score=21.33 Aligned_cols=55 Identities=9% Similarity=0.107 Sum_probs=34.5
Q ss_pred ccEEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhh----CCCCCCCcEEEE
Q 021468 50 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYF----GITGEAPKVLAY 112 (312)
Q Consensus 50 ~~~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~----~v~~~~~P~~~~ 112 (312)
..+|+|-.++ ..|..+...|.+ +.-...++.+|-... ..++-+.+ |-+. .|.+++
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~~~--g~eiq~~l~~~tg~~t--vP~vFI 73 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDEDED--GSEIQKALKKLTGQRT--VPNVFI 73 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCCCC--cHHHHHHHHHhcCCCC--CCEEEE
Confidence 5667777777 999998888887 444566777776542 33433332 2333 487754
No 465
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=30.81 E-value=2.2e+02 Score=20.88 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=37.4
Q ss_pred CCCcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCcc
Q 021468 176 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 223 (312)
Q Consensus 176 ~~k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~ 223 (312)
.++.+||.=.|+.|+.-. ....|.+|..+|+.. .+.+..+-|....
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~-gl~ILaFPcnqFg 65 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK-GLEILAFPCNQFG 65 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG-TEEEEEEEBSTTT
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC-CeEEEeeehHHhc
Confidence 578899999999999888 666899999999864 5888878877643
No 466
>COG3411 Ferredoxin [Energy production and conversion]
Probab=30.34 E-value=83 Score=20.62 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=24.3
Q ss_pred CceEEEEeCCCcccCceeeccCcCHHHHHHHHHhcCC
Q 021468 232 FPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 268 (312)
Q Consensus 232 ~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~~~ 268 (312)
=|.+++|++|- -|.+ .+.+...+++++|+.
T Consensus 17 gPvl~vYpegv------WY~~-V~p~~a~rIv~~hl~ 46 (64)
T COG3411 17 GPVLVVYPEGV------WYTR-VDPEDARRIVQSHLL 46 (64)
T ss_pred CCEEEEecCCe------eEec-cCHHHHHHHHHHHHh
Confidence 39999999882 4544 788999999999975
No 467
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=29.92 E-value=33 Score=22.50 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=15.9
Q ss_pred EEEEcCCChhhhcchHHHHHH
Q 021468 182 LEIYAPWCGHCQAFEPTYNKL 202 (312)
Q Consensus 182 V~f~~~~C~~C~~~~~~~~~l 202 (312)
.+|+.++|+.|+..+-.+...
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~ 22 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL 22 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc
Confidence 468889999998776555554
No 468
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=29.83 E-value=96 Score=28.76 Aligned_cols=53 Identities=8% Similarity=-0.021 Sum_probs=34.6
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhh---------hCCCCCCCcEEEE
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEY---------FGITGEAPKVLAY 112 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~---------~~v~~~~~P~~~~ 112 (312)
+++|..+| ++|.++...|.+. | |.|..+|.++......+... .|.+.. |.+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----g-i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tv--P~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----D-IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTV--PQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----C-CCeEEEECCCChhHHHHHHHHhhccccccCCCCcc--CeEEE
Confidence 55666777 9999999998864 3 77888888753211122222 355666 98855
No 469
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=29.24 E-value=78 Score=25.37 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=27.3
Q ss_pred EEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCC
Q 021468 54 LLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDN 89 (312)
Q Consensus 54 ~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~ 89 (312)
+|..|. +.|=.+.|.|.++..+|.+++.|-.|=...
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~~~ 38 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPGGL 38 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE--S
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEccc
Confidence 466677 999999999999999999988777766544
No 470
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=28.90 E-value=2.2e+02 Score=24.57 Aligned_cols=45 Identities=11% Similarity=0.178 Sum_probs=27.5
Q ss_pred CCcEEEEEEcCCChh-hhcchHHHHHHHHHhcCCCcE----EEEEEeCCC
Q 021468 177 SKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGVDSI----VIAKMDGTT 221 (312)
Q Consensus 177 ~k~~lV~f~~~~C~~-C~~~~~~~~~la~~~~~~~~v----~~~~vd~~~ 221 (312)
++.+|++|-=+.|+. |-.....+..+..++..+..+ .|..+|-..
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeR 188 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPER 188 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCccc
Confidence 577888888888886 655444555555555544322 566666543
No 471
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=28.78 E-value=58 Score=24.28 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=17.6
Q ss_pred EEEEEEcCCChhhhcchHHHHHH
Q 021468 180 VLLEIYAPWCGHCQAFEPTYNKL 202 (312)
Q Consensus 180 ~lV~f~~~~C~~C~~~~~~~~~l 202 (312)
.+..|+.|.|..|+.....|++-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHc
Confidence 35678899999999887666554
No 472
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=28.51 E-value=1.2e+02 Score=20.87 Aligned_cols=52 Identities=6% Similarity=0.082 Sum_probs=29.0
Q ss_pred EEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc---ccCCCCCCceEEE
Q 021468 180 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HRAKSDGFPTILF 237 (312)
Q Consensus 180 ~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~---~~~~i~~~Pt~~~ 237 (312)
.+.+|+.+.|+.|...+-.+....- .+.+..++...... .......+|.+..
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl------~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNI------PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCC------CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 4666788889999887655544422 24444445432211 1223456788864
No 473
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=27.17 E-value=49 Score=24.26 Aligned_cols=76 Identities=7% Similarity=0.020 Sum_probs=39.2
Q ss_pred EEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccC----CCCCCceEEEE-eCCCcccCceeec-cC
Q 021468 182 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRA----KSDGFPTILFF-PAGNKSFDPINVD-VD 253 (312)
Q Consensus 182 V~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~----~i~~~Pt~~~~-~~g~~~~~~~~y~-g~ 253 (312)
.+|+.+.|..|++....+++- ++.+-.+|..+.+. .++ ...+.+.--++ ..|... +-.... ..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y-~~l~~~~~~ 72 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA--------GIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPY-KELGLADPE 72 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchH-HHcCCCccC
Confidence 578899999999876554443 35555567655543 111 11121111222 222211 111111 25
Q ss_pred cCHHHHHHHHHhc
Q 021468 254 RTVVALYKFLKKN 266 (312)
Q Consensus 254 ~~~~~l~~fi~~~ 266 (312)
.+.+++++.|.++
T Consensus 73 ls~~e~i~ll~~~ 85 (112)
T cd03034 73 LSDEELIDAMAAH 85 (112)
T ss_pred CCHHHHHHHHHhC
Confidence 6778888888887
No 474
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=26.40 E-value=1e+02 Score=24.47 Aligned_cols=40 Identities=15% Similarity=0.045 Sum_probs=33.2
Q ss_pred ccEEEEEeeC-CchhhHHHHHHHHHHHcCC-eEEEEEEeCCC
Q 021468 50 KNQLLLFAVS-NDSEKLLPVFEEAAKSFKG-KLIFVYVQMDN 89 (312)
Q Consensus 50 ~~~i~f~~~~-~~c~~~~~~~~~la~~~~~-~i~f~~vd~~~ 89 (312)
...+.++++. +-|.-+.-.++.+|+.|.+ .|.+-.++|..
T Consensus 129 ~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~~~v~i~~~~~~~ 170 (171)
T PF07700_consen 129 ELTLHYRSPRPGLCPYVIGLIRGAAKHFFELDVEIEHVECMH 170 (171)
T ss_dssp EEEEEEEESSSSTHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHHhCCCCeEEEEecccC
Confidence 4445566666 9999999999999999999 89999988865
No 475
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.65 E-value=84 Score=26.42 Aligned_cols=39 Identities=18% Similarity=0.411 Sum_probs=29.5
Q ss_pred ccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHHHHHHHHHHH
Q 021468 93 GKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 139 (312)
Q Consensus 93 ~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~~i~~fi~~~ 139 (312)
+..+...+||.+. |++++-+ + .+.|..+.++|.+.|...
T Consensus 204 ~~~~a~~~gv~gT--Pt~~v~~-~-----~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 204 NYKLAQQLGVNGT--PTFIVNG-K-----LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHHhcCCCcC--CeEEECC-e-----eecCCCCHHHHHHHHHHh
Confidence 4466788999988 9996632 2 567888899999888764
No 476
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=25.64 E-value=55 Score=24.13 Aligned_cols=76 Identities=8% Similarity=0.008 Sum_probs=40.1
Q ss_pred EEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--cc----CCCCCCce-EEEE-eCCCcccCceeecc-
Q 021468 182 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR----AKSDGFPT-ILFF-PAGNKSFDPINVDV- 252 (312)
Q Consensus 182 V~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~----~~i~~~Pt-~~~~-~~g~~~~~~~~y~g- 252 (312)
.+|+.+.|..|++....+++- ++.+-.+|..+.+. .+ +.-.+.+. --++ +.+... +-.....
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~~lin~~~~~~-~~l~~~~~ 72 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK--------GIEPEVVKYLKNPPTKSELEAIFAKLGLTVAREMIRTKEALY-KELGLSDP 72 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEeccCCCcCHHHHHHHHHHcCCchHHHHHhcCCcHH-HHcCCCcc
Confidence 578899999999977655553 34555567665544 11 11123332 1123 233221 1111121
Q ss_pred CcCHHHHHHHHHhc
Q 021468 253 DRTVVALYKFLKKN 266 (312)
Q Consensus 253 ~~~~~~l~~fi~~~ 266 (312)
..+.+++++.|.++
T Consensus 73 ~ls~~e~i~~l~~~ 86 (114)
T TIGR00014 73 NLSDQELLDAMVAH 86 (114)
T ss_pred CCCHHHHHHHHHHC
Confidence 45667788888777
No 477
>PRK09301 circadian clock protein KaiB; Provisional
Probab=23.22 E-value=2.2e+02 Score=20.75 Aligned_cols=73 Identities=12% Similarity=-0.048 Sum_probs=49.1
Q ss_pred CcEEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEEeCCCcccCceeeccCcC
Q 021468 178 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRT 255 (312)
Q Consensus 178 k~~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~ 255 (312)
..++=+|.+...+..+.....+.++-...-.. .+.+-.+|+.+++. ..++|-..||++=--..-.. +..|.++
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g-~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~r----riiGDls 80 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFKG-VYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVR----KIIGDLS 80 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcc----eeecccc
Confidence 44566677777777777777777776655443 47777889998887 78899999996543222111 5667554
No 478
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=22.76 E-value=3.7e+02 Score=20.85 Aligned_cols=74 Identities=12% Similarity=0.129 Sum_probs=0.0
Q ss_pred EEEEEeeC-CchhhHHHHHHHHHHHcCCeEEEEEEeCCCCccccchhhhhCCCCCCCcEEEEEcCCCCceeccCCCCCHH
Q 021468 52 QLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLD 130 (312)
Q Consensus 52 ~i~f~~~~-~~c~~~~~~~~~la~~~~~~i~f~~vd~~~~~~~~~l~~~~~v~~~~~P~~~~~~~~~~~~~~~~g~~~~~ 130 (312)
+++++++. +=|......++ .+| +.+-.+..++ ...+-+++||....--+-...-+|. -..|....+
T Consensus 28 ~~vyksPnCGCC~~w~~~mk-----~~G-f~Vk~~~~~d---~~alK~~~gIp~e~~SCHT~VI~Gy----~vEGHVPa~ 94 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMK-----ANG-FEVKVVETDD---FLALKRRLGIPYEMQSCHTAVINGY----YVEGHVPAE 94 (149)
T ss_pred EEEEeCCCCccHHHHHHHHH-----hCC-cEEEEeecCc---HHHHHHhcCCChhhccccEEEEcCE----EEeccCCHH
Q ss_pred HHHHHHHH
Q 021468 131 KIKTFGED 138 (312)
Q Consensus 131 ~i~~fi~~ 138 (312)
.|..|+.+
T Consensus 95 aI~~ll~~ 102 (149)
T COG3019 95 AIARLLAE 102 (149)
T ss_pred HHHHHHhC
No 479
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=22.21 E-value=2.4e+02 Score=19.79 Aligned_cols=58 Identities=16% Similarity=-0.017 Sum_probs=41.7
Q ss_pred EEEEEEcCCChhhhcchHHHHHHHHHhcCCCcEEEEEEeCCCccc--ccCCCCCCceEEEE
Q 021468 180 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILFF 238 (312)
Q Consensus 180 ~lV~f~~~~C~~C~~~~~~~~~la~~~~~~~~v~~~~vd~~~~~~--~~~~i~~~Pt~~~~ 238 (312)
++=+|.+...+.++.....+.++-+..-.. .+.+-.+|+.+++. +.+++-..||++=-
T Consensus 5 ~LrLyvag~~p~S~~ai~nl~~i~e~~l~g-~y~LeVIDv~~qP~lAE~~~IvATPtLIK~ 64 (87)
T TIGR02654 5 VLKLYVAGNTPNSVRALKTLKNILETEFQG-VYALKVIDVLKNPQLAEEDKILATPTLSKI 64 (87)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCEEEecHHhhc
Confidence 445666666667777667777776655443 47777889998887 78899999997543
No 480
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=22.18 E-value=2.3e+02 Score=18.26 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=10.7
Q ss_pred CCChhhhcchHHHHH
Q 021468 187 PWCGHCQAFEPTYNK 201 (312)
Q Consensus 187 ~~C~~C~~~~~~~~~ 201 (312)
++|+.|...+-.+..
T Consensus 14 s~sp~~~~v~~~L~~ 28 (72)
T cd03054 14 SLSPECLKVETYLRM 28 (72)
T ss_pred CCCHHHHHHHHHHHh
Confidence 579999887655544
No 481
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=21.21 E-value=92 Score=28.12 Aligned_cols=75 Identities=19% Similarity=0.264 Sum_probs=44.8
Q ss_pred ChhhhcchHHHHHHHHHhc----CC-CcEEEEEEeCCCccc-----ccCCCC-C-CceEEEEeCCCcccCceee-ccCcC
Q 021468 189 CGHCQAFEPTYNKLAKHLR----GV-DSIVIAKMDGTTNEH-----HRAKSD-G-FPTILFFPAGNKSFDPINV-DVDRT 255 (312)
Q Consensus 189 C~~C~~~~~~~~~la~~~~----~~-~~v~~~~vd~~~~~~-----~~~~i~-~-~Pt~~~~~~g~~~~~~~~y-~g~~~ 255 (312)
|+.|-+..-.+..++.+.. .. ..++++.+-|--|.. ..+++. + --...+|+.|+.+. .. ....-
T Consensus 271 CPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~---k~~~ee~~ 347 (359)
T PF04551_consen 271 CPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVK---KVIPEEEI 347 (359)
T ss_dssp ----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEE---EE-CSTCH
T ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEE---ecCCHHHH
Confidence 7777555545555555433 22 269999999998865 356665 3 34589999988764 44 44555
Q ss_pred HHHHHHHHHhc
Q 021468 256 VVALYKFLKKN 266 (312)
Q Consensus 256 ~~~l~~fi~~~ 266 (312)
.+.|.+.|+++
T Consensus 348 vd~L~~~I~~~ 358 (359)
T PF04551_consen 348 VDELIELIEEH 358 (359)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 68888887765
No 482
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=20.42 E-value=1.6e+02 Score=24.32 Aligned_cols=46 Identities=7% Similarity=-0.015 Sum_probs=32.0
Q ss_pred EeCCCcccccCCCCCCceEEEEeCCCcccCceeeccCcCHHHHHHHHHhc
Q 021468 217 MDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 266 (312)
Q Consensus 217 vd~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~y~g~~~~~~l~~fi~~~ 266 (312)
+.++......|+|+.+|++++..... .+ ...|..+...-.+.+.+.
T Consensus 148 v~IDP~lF~~F~I~~VPafVv~C~~~-yD---~I~GNIsl~~ALe~iA~~ 193 (212)
T PRK13730 148 VQIDPTLFSQYGIRSVPALVVFCSQG-YD---IIRGNLRVGQALEKVAAT 193 (212)
T ss_pred eeECHHHHHhcCCccccEEEEEcCCC-CC---EEEecccHHHHHHHHHhc
Confidence 34444444899999999999985432 22 667888887777666654
Done!