Query 021469
Match_columns 312
No_of_seqs 128 out of 809
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 04:36:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.4 3.5E-11 1.2E-15 113.0 23.2 264 25-300 150-434 (451)
2 3o7q_A L-fucose-proton symport 99.3 8.5E-11 2.9E-15 110.0 20.5 235 24-276 147-404 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.0 1.9E-08 6.5E-13 95.7 19.4 146 158-303 320-475 (491)
4 2gfp_A EMRD, multidrug resista 98.9 8.7E-10 3E-14 101.3 5.6 227 25-276 119-349 (375)
5 4gc0_A D-xylose-proton symport 98.8 8.8E-07 3E-11 84.0 21.5 111 160-275 315-428 (491)
6 3o7q_A L-fucose-proton symport 98.7 3.5E-07 1.2E-11 85.2 17.4 116 156-277 60-177 (438)
7 2cfq_A Lactose permease; trans 98.7 4.5E-08 1.6E-12 91.7 9.0 113 156-276 258-372 (417)
8 1pw4_A Glycerol-3-phosphate tr 98.6 2.7E-07 9.3E-12 86.3 13.5 116 155-276 60-178 (451)
9 4aps_A DI-OR tripeptide H+ sym 98.5 6.3E-06 2.2E-10 78.1 19.9 136 156-299 53-196 (491)
10 2xut_A Proton/peptide symporte 98.5 9.2E-07 3.1E-11 84.7 13.9 118 159-276 337-464 (524)
11 2gfp_A EMRD, multidrug resista 98.4 5.6E-06 1.9E-10 75.6 15.2 113 156-276 34-147 (375)
12 2xut_A Proton/peptide symporte 98.2 3.7E-05 1.3E-09 73.5 17.2 134 156-296 53-195 (524)
13 4gc0_A D-xylose-proton symport 97.5 0.00073 2.5E-08 63.6 12.6 114 158-274 56-183 (491)
14 2cfq_A Lactose permease; trans 97.0 0.00026 8.7E-09 65.9 2.9 73 117-190 2-76 (417)
15 2g9p_A Antimicrobial peptide l 28.8 18 0.00061 18.6 0.7 13 176-188 2-14 (26)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.42 E-value=3.5e-11 Score=113.02 Aligned_cols=264 Identities=10% Similarity=-0.027 Sum_probs=155.9
Q ss_pred CceeechhhHHHHHHHHhHhhhhHHhhHhhcCCCCcCCCCchhhHHHHHHHHHHHHHH-HHhccCCcccccc---chhhc
Q 021469 25 GTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGEK---ETADA 100 (312)
Q Consensus 25 ~~~~g~~~gifw~i~~~s~iiG~li~~~~~~~~~~~~~~~~~~~~~if~~i~~~g~~l-~lfL~~~~~~~~~---~~~~~ 100 (312)
+++|++..|+.....+.+.++|..+...+....+ ..+..|.+..++.++..++ .+++|+++++.+. ++.+.
T Consensus 150 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-----~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (451)
T 1pw4_A 150 QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN-----DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN 224 (451)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC-----CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc
Confidence 4789999999999999999999988866543211 1234555655555555444 3556553322111 10000
Q ss_pred c----hhhhhHHHHHHHH--HHHhhcChhhHHHHHHHHhhhhHhhhhhhcccccccccccc--cchhhHHHHHHhHHHHH
Q 021469 101 S----VNFYSYLVSLSKS--ITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFDAI 172 (312)
Q Consensus 101 ~----~~~~~s~~~~~~~--~~~~~~~~~~lll~p~~~~~G~~~~f~~~~~~~~~~s~~lg--~~~~g~v~~~~g~~~~i 172 (312)
+ .++...-+...++ ..+.+++|+++.+....+..++.........+. +..+..| ....|++....++++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 303 (451)
T 1pw4_A 225 DYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT-YLKEVKHFALDKSSWAYFLYEYAGIP 303 (451)
T ss_dssp C-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HBTTBSCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 0 0000000011111 245678888766555444443332222222221 1122223 34578889999999999
Q ss_pred HHHHHhhhhcCC--CChhhHHHHHHHHHH-HHHHHHHhcccCCCCCCCchHHHHHHHHHHhhhhHHhhhhHhHHHHhccC
Q 021469 173 CSLAAGRLTTGL--PSITFIVSGGAIAQV-VVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH 249 (312)
Q Consensus 173 g~~~~G~l~d~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~t~~~~i~g~~~~~ 249 (312)
++++.|++.||+ ++|+ .+.++.++.. .++.+ + .+.++. +.+...+..++.|++.+..+...+.++.+.+|+
T Consensus 304 ~~~~~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (451)
T 1pw4_A 304 GTLLCGWMSDKVFRGNRG-ATGVFFMTLVTIATIV-Y-WMNPAG---NPTVDMICMIVIGFLIYGPVMLIGLHALELAPK 377 (451)
T ss_dssp HHHHHHHHHHHTSTTCHH-HHHHHHHHHHHHHHHH-T-TSCCTT---CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHH-H-HHhccc---CHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch
Confidence 999999999998 7665 4334433333 33222 2 222221 134566778888999888888888999999986
Q ss_pred C-hhhhHHHHHHHHHH-HHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHHHHhh
Q 021469 250 D-TEGAFAQLKVWQCA-SIAVVFFIGPYI----SLQAMLIVMVVGICVALVGILFLT 300 (312)
Q Consensus 250 ~-~~~afa~~~~~qs~-g~ai~f~~~~~l----~~~~~~~il~~~~~~~~~~~~~~~ 300 (312)
+ +..++++......+ |.+++-.+.+.+ .....+++..++.+++.+......
T Consensus 378 ~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 378 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 56899999999999 998888776653 233344555556666666555543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.34 E-value=8.5e-11 Score=110.05 Aligned_cols=235 Identities=9% Similarity=0.012 Sum_probs=137.1
Q ss_pred cCceeechhhHHHHHHHHhHhhhhHHhhHhh-cCCCCcCCC-------------------CchhhHHHHHHHHHHHHHHH
Q 021469 24 EGTVIGSFNGEFWGMFASHQFVGNLITLAVL-KDDKGGSTS-------------------GTTLLFIVFLGVITLGTILM 83 (312)
Q Consensus 24 ~~~~~g~~~gifw~i~~~s~iiG~li~~~~~-~~~~~~~~~-------------------~~~~~~~if~~i~~~g~~l~ 83 (312)
++++|++..|+.....+.+.++|.++...+. .......++ ..+..|.+..++..+..++.
T Consensus 147 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 226 (438)
T 3o7q_A 147 PESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLI 226 (438)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999987776 332110000 02345555555555555555
Q ss_pred HhccCCccccccchhhcchhhhhHHHHHHHHHHHhhcChhhHHHHHHH-HhhhhHhhhhhhcccccccccccc--cchhh
Q 021469 84 CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLF-AYSGLQQAFVWAEFTKEIVTPALG--VSGVG 160 (312)
Q Consensus 84 lfL~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~lll~p~~-~~~G~~~~f~~~~~~~~~~s~~lg--~~~~g 160 (312)
++.+.|+.++++++++ ++.+.++ +..+++++|+.+...... ++.+...++. ...+.-+..+..| ....+
T Consensus 227 ~~~~~p~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~ 298 (438)
T 3o7q_A 227 MLTKFPALQSDNHSDA----KQGSFSA---SLSRLARIRHWRWAVLAQFCYVGAQTACW-SYLIRYAVEEIPGMTAGFAA 298 (438)
T ss_dssp HHCCCCCCTTTCCCCS----STTSHHH---HHHHHTTCSHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSTTCCHHHHH
T ss_pred HHHcCCcccccccccc----cccchhh---hHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhccCCcchhHHH
Confidence 5555555443321111 1111222 233467788876555443 3333222221 1111110222223 34678
Q ss_pred HHHHHHhHHHHHHHHHHhhhhcCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHhhhhHHhhhhH
Q 021469 161 GAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLS 240 (312)
Q Consensus 161 ~v~~~~g~~~~ig~~~~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~t~~~ 240 (312)
+.....+++.+++.++.|++.||++||+ ++.++.++......+.. +.++ ....+..++.|++.+......+
T Consensus 299 ~~~~~~~~~~~~~~~~~g~l~~r~~~~~-~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~g~~~~~~~~~~~ 369 (438)
T 3o7q_A 299 NYLTGTMVCFFIGRFTGTWLISRFAPHK-VLAAYALIAMALCLISA--FAGG------HVGLIALTLCSAFMSIQYPTIF 369 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHHH--HCCH------HHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHH--HcCC------cHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999998765 44455444444333222 2222 2245556888898888888888
Q ss_pred hHHHHhccCChhhhHHHHHHHHHHHHHHHHHhhhhh
Q 021469 241 ALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI 276 (312)
Q Consensus 241 ~i~g~~~~~~~~~afa~~~~~qs~g~ai~f~~~~~l 276 (312)
.+..+.+|+++..+.+... ...+|.+++-.+.+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l 404 (438)
T 3o7q_A 370 SLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFV 404 (438)
T ss_dssp HHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHH
T ss_pred HHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHH
Confidence 8888888876655555544 5557777666665544
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.01 E-value=1.9e-08 Score=95.66 Aligned_cols=146 Identities=15% Similarity=0.064 Sum_probs=91.9
Q ss_pred hhhHHHHHHhHHHHHHHHHHhhhhcCCCChhh----HHHHHHHHHHHHHHHHHh-c-ccCCCCCCCchHHHHHHHHHHhh
Q 021469 158 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITF----IVSGGAIAQVVVFLWILI-N-YSVTSGVLGTLYPLIMAALLGIG 231 (312)
Q Consensus 158 ~~g~v~~~~g~~~~ig~~~~G~l~d~~~~~~~----~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~G~~ 231 (312)
..++.....++..++++.+.|++.||++||+. .+..+.++...++.+... . ...+.+..++++..+..++.|++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 399 (491)
T 4aps_A 320 PVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILG 399 (491)
T ss_dssp CSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHH
T ss_pred CHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHH
Confidence 45666677888899999999999999987632 223444444444332211 1 11111111234566778899999
Q ss_pred hhHHhhhhHhHHHHhccCC-hhhhHHHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021469 232 DGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS---LQAMLIVMVVGICVALVGILFLTIQV 303 (312)
Q Consensus 232 d~~~~t~~~~i~g~~~~~~-~~~afa~~~~~qs~g~ai~f~~~~~l~---~~~~~~il~~~~~~~~~~~~~~~~~~ 303 (312)
.+......+.++.+.+|++ +..+.+++.....+|.+++-.+.+.+. ......+..++.+++.+..+....+.
T Consensus 400 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 400 EMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888999999999865 467899999999999999988877652 22233444444444444444443333
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.91 E-value=8.7e-10 Score=101.30 Aligned_cols=227 Identities=14% Similarity=0.013 Sum_probs=130.2
Q ss_pred CceeechhhHHHHHHHHhHhhhhHHhhHhhcCCCCcCCCCchhhHHHHHHHHHHHHHHH-HhccCCccccccchhhcchh
Q 021469 25 GTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVN 103 (312)
Q Consensus 25 ~~~~g~~~gifw~i~~~s~iiG~li~~~~~~~~~~~~~~~~~~~~~if~~i~~~g~~l~-lfL~~~~~~~~~~~~~~~~~ 103 (312)
+++|++..++.....+.+.++|..+...+.... ..+..|.+..++..+..++. .++|+++++++++ + +
T Consensus 119 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~ 187 (375)
T 2gfp_A 119 RTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW------NWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR-T----R 187 (375)
T ss_dssp TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH------HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC-C----C
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc-c----c
Confidence 468999999999999999999998887664311 12345555555444444322 3344332222111 0 1
Q ss_pred hhhHHHHHHHHHHHhhcChhhHHHHHHHHhhhhHhhhhhhcccccccccccc--cchhhHHHHHHhHHHHHHHHHHhhhh
Q 021469 104 FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFDAICSLAAGRLT 181 (312)
Q Consensus 104 ~~~s~~~~~~~~~~~~~~~~~lll~p~~~~~G~~~~f~~~~~~~~~~s~~lg--~~~~g~v~~~~g~~~~ig~~~~G~l~ 181 (312)
+.+++ .+.+++|+.+.+....+..+..........+. +..+..| ....|+.....+++.++++.+.|++.
T Consensus 188 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~ 259 (375)
T 2gfp_A 188 LLTSY-------KTLFGNSGFNCYLLMLIGGLAGIAAFEACSGV-LMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPN 259 (375)
T ss_dssp TTTCS-------THHHHHHHHHHHHHHHHHHHHHHHHHHHHCSC-SSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTT
T ss_pred HHHHH-------HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 23445666655444333333222222222222 2122223 34578888889999999999999998
Q ss_pred cCCCChhhHHHHHHHH-HHHHHHHHHhcccCCCCCCCchHHHHHHHHHHhhhhHHhhhhHhHHHHhccCChhhhHHHHHH
Q 021469 182 TGLPSITFIVSGGAIA-QVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKV 260 (312)
Q Consensus 182 d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~t~~~~i~g~~~~~~~~~afa~~~~ 260 (312)
||++++ . ..+..+ ...+.......+.+++ +++...+..++.|++.+..+...+.+..+..|+++.++.++.+.
T Consensus 260 ~r~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~ 333 (375)
T 2gfp_A 260 KRFSTL--M-WQSVICCLLAGLLMWIPDWFGVM---NVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGG 333 (375)
T ss_dssp THHHHH--H-HHHHHHHHHTSSSSSHHHHHHHH---HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHH--H-HHHHHHHHHHHHHHHHHhhhccc---cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHH
Confidence 886532 2 222222 1111110000110010 12345677888999999999999999999888666789999999
Q ss_pred HHHHHHHHHHHhhhhh
Q 021469 261 WQCASIAVVFFIGPYI 276 (312)
Q Consensus 261 ~qs~g~ai~f~~~~~l 276 (312)
.+.+|..++-.+.+.+
T Consensus 334 ~~~~g~~~~~~~~g~l 349 (375)
T 2gfp_A 334 LQNIGSGVLASLSAML 349 (375)
T ss_dssp HHHHHHHCCSTTCTHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888887766655544
No 5
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.78 E-value=8.8e-07 Score=83.98 Aligned_cols=111 Identities=13% Similarity=0.030 Sum_probs=64.9
Q ss_pred hHHHHHHhHHHHHHHHHHhhhhcCCCChhhHHHHHHHHHHHHHHHH-HhcccCCCCCCCchHHHHHHHHH-HhhhhHHhh
Q 021469 160 GGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI-LINYSVTSGVLGTLYPLIMAALL-GIGDGVLNT 237 (312)
Q Consensus 160 g~v~~~~g~~~~ig~~~~G~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~-G~~d~~~~t 237 (312)
.......++...+++++.+.+.||++||+.. ..+......+...+ ......+. .....+...++ +.....+..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~-~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4gc0_A 315 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQ-IIGALGMAIGMFSLGTAFYTQAP----GIVALLSMLFYVAAFAMSWGP 389 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHH-HHHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHTTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcchh-ccchHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHHHHhHHHH
Confidence 4445567888999999999999999987633 34443333332221 11121111 11222222222 222233445
Q ss_pred hhHhHHHHhccCC-hhhhHHHHHHHHHHHHHHHHHhhhh
Q 021469 238 QLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY 275 (312)
Q Consensus 238 ~~~~i~g~~~~~~-~~~afa~~~~~qs~g~ai~f~~~~~ 275 (312)
..+.+.++.||.+ +..+.++....+.++..++-...|.
T Consensus 390 ~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~ 428 (491)
T 4gc0_A 390 VCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPM 428 (491)
T ss_dssp HHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888899865 4678888888888888777655554
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.75 E-value=3.5e-07 Score=85.24 Aligned_cols=116 Identities=12% Similarity=0.049 Sum_probs=90.1
Q ss_pred cchhhHHHHHHhHHHHHHHHHHhhhhcCCCChhhHHHHHHHHHHHHHHHHHh-cccCCCCCCCchHHHHHHHHHHhhhhH
Q 021469 156 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-NYSVTSGVLGTLYPLIMAALLGIGDGV 234 (312)
Q Consensus 156 ~~~~g~v~~~~g~~~~ig~~~~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~G~~d~~ 234 (312)
..++|++...+.++.++++.+.|++.||++||+ .+.++.++.....++... ...++ .+..++..++.|++.+.
T Consensus 60 ~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~-~l~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~l~G~~~~~ 133 (438)
T 3o7q_A 60 NFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA-GIITGLFLYALGAALFWPAAEIMN-----YTLFLVGLFIIAAGLGC 133 (438)
T ss_dssp SHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH-HHHHHHHHHHHHHHHHHhcccccc-----HHHHHHHHHHHHhhHHH
Confidence 457899999999999999999999999999775 555665555544433211 12222 34567788999999999
Q ss_pred HhhhhHhHHHHhccCCh-hhhHHHHHHHHHHHHHHHHHhhhhhh
Q 021469 235 LNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYIS 277 (312)
Q Consensus 235 ~~t~~~~i~g~~~~~~~-~~afa~~~~~qs~g~ai~f~~~~~l~ 277 (312)
.....+.++.+.+|+++ ..+++......++|..++-.+...+.
T Consensus 134 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 134 LETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998544 57899999999999999998877643
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.67 E-value=4.5e-08 Score=91.73 Aligned_cols=113 Identities=8% Similarity=0.014 Sum_probs=75.3
Q ss_pred cchhhHHHHHHhHHHHHHHHHHhhhhcCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHhhhhHH
Q 021469 156 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL 235 (312)
Q Consensus 156 ~~~~g~v~~~~g~~~~ig~~~~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~ 235 (312)
....|+.....+++++++..+.|++.||++||+ ++..+.++....+... .+.++ ++...+..++.+++.+.+
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-~l~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~l~~~~~~~~ 329 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-ALLLAGTIMSVRIIGS--SFATS-----ALEVVILKTLHMFEVPFL 329 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHH--TTCCS-----HHHHHHHTTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-HHHHHHHHHHHHHHHH--HHhcc-----HHHHHHHHHHHHHHHHHH
Confidence 345677777888899999999999999998765 4444554444333222 22222 233445566677777777
Q ss_pred hhhhHhHHHHhccCCh-hhhHHH-HHHHHHHHHHHHHHhhhhh
Q 021469 236 NTQLSALLGILFKHDT-EGAFAQ-LKVWQCASIAVVFFIGPYI 276 (312)
Q Consensus 236 ~t~~~~i~g~~~~~~~-~~afa~-~~~~qs~g~ai~f~~~~~l 276 (312)
+.....+..+.+|++. ..+.+. +...+.+|..++-.+.+.+
T Consensus 330 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l 372 (417)
T 2cfq_A 330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Confidence 7777788888888654 455676 5777888888777666653
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.65 E-value=2.7e-07 Score=86.25 Aligned_cols=116 Identities=9% Similarity=0.062 Sum_probs=89.9
Q ss_pred ccchhhHHHHHHhHHHHHHHHHHhhhhcCCCChhhHHHHHHHHHHHHHHHHHhc-c-cCCCCCCCchHHHHHHHHHHhhh
Q 021469 155 GVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILIN-Y-SVTSGVLGTLYPLIMAALLGIGD 232 (312)
Q Consensus 155 g~~~~g~v~~~~g~~~~ig~~~~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~G~~d 232 (312)
....+|++..++.++..+++.+.|++.||++||+ ++.++.++...+.++.... . .++ .+..++..++.|++.
T Consensus 60 s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~-~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~l~G~~~ 133 (451)
T 1pw4_A 60 SRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV-FLPAGLILAAAVMLFMGFVPWATSS-----IAVMFVLLFLCGWFQ 133 (451)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHHHHCHHHHSS-----SSHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH-HHHHHHHHHHHHHHHHHhhhhcccc-----HHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999775 5556666655544433210 0 122 245778899999999
Q ss_pred hHHhhhhHhHHHHhccCC-hhhhHHHHHHHHHHHHHHHHHhhhhh
Q 021469 233 GVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI 276 (312)
Q Consensus 233 ~~~~t~~~~i~g~~~~~~-~~~afa~~~~~qs~g~ai~f~~~~~l 276 (312)
+........++.+.+|++ +..++++.....++|..++-.+...+
T Consensus 134 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 134 GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred hhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999854 46899999999999999888777653
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.54 E-value=6.3e-06 Score=78.10 Aligned_cols=136 Identities=15% Similarity=0.207 Sum_probs=98.5
Q ss_pred cchhhHHHHHHhHHHHHHHHHHhhhhcC-CCChhhHHHHHHHHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHhhhhH
Q 021469 156 VSGVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGV 234 (312)
Q Consensus 156 ~~~~g~v~~~~g~~~~ig~~~~G~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~ 234 (312)
...+|.+...+.++..+++.+.|++.|| ++||+ .+..+.++...+.++. ...++ .+..++..++.|++.+.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~-~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~l~g~~~~~ 124 (491)
T 4aps_A 53 RATAASIMAIYASMVYLSGTIGGFVADRIIGARP-AVFWGGVLIMLGHIVL--ALPFG-----ASALFGSIILIIIGTGF 124 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH-HHHHHHHHHHHHHHHH--HSCCS-----TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHHHHH--HHhhh-----HHHHHHHHHHHHHHHHh
Confidence 3568899999999999999999999999 89775 5556666655544433 23222 24567788899999999
Q ss_pred HhhhhHhHHHHhccCCh---hhhHHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHHHHh
Q 021469 235 LNTQLSALLGILFKHDT---EGAFAQLKVWQCASIAVVFFIGPYI----SLQAMLIVMVVGICVALVGILFL 299 (312)
Q Consensus 235 ~~t~~~~i~g~~~~~~~---~~afa~~~~~qs~g~ai~f~~~~~l----~~~~~~~il~~~~~~~~~~~~~~ 299 (312)
.......++++.+|+++ ..+++.+....++|..++-.+...+ ..++.+++..+..+++.+.+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 125 LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999997543 3578889999999999988877754 23444444444555555554444
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.53 E-value=9.2e-07 Score=84.74 Aligned_cols=118 Identities=7% Similarity=-0.018 Sum_probs=71.0
Q ss_pred hhHHHHHHhHHHHHHHHHHhhhh----cCCCCh---hhHHHHHHHHHHHHHHHHHh-cccCC-CCCCCchHHHHHHHHHH
Q 021469 159 VGGAMAVYGAFDAICSLAAGRLT----TGLPSI---TFIVSGGAIAQVVVFLWILI-NYSVT-SGVLGTLYPLIMAALLG 229 (312)
Q Consensus 159 ~g~v~~~~g~~~~ig~~~~G~l~----d~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~l~G 229 (312)
.+......+++.++++.+.+++. ||.++| ...+.++.++...++++... ....+ .+....++..+..++.|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 416 (524)
T 2xut_A 337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT 416 (524)
T ss_dssp HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence 34444455556666666666654 443321 12344555554444332211 11011 01112345667789999
Q ss_pred hhhhHHhhhhHhHHHHhccCC-hhhhHHHHHHHHHHHHHHHHHhhhhh
Q 021469 230 IGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI 276 (312)
Q Consensus 230 ~~d~~~~t~~~~i~g~~~~~~-~~~afa~~~~~qs~g~ai~f~~~~~l 276 (312)
++.+......+.++.+..|++ +..+.++++..+.+|..++-.+.+.+
T Consensus 417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~ 464 (524)
T 2xut_A 417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSV 464 (524)
T ss_dssp HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999854 46899999999999999988777654
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.41 E-value=5.6e-06 Score=75.59 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=87.8
Q ss_pred cchhhHHHHHHhHHHHHHHHHHhhhhcCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHhhhhHH
Q 021469 156 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL 235 (312)
Q Consensus 156 ~~~~g~v~~~~g~~~~ig~~~~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~ 235 (312)
..++|++...+.++..+++.+.|++.||++||+ .+..+.++......+.. ..++ .+..++..++.|++.+..
T Consensus 34 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~~--~~~~-----~~~l~~~~~l~g~~~~~~ 105 (375)
T 2gfp_A 34 EGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP-VILVGMSIFMLATLVAV--TTSS-----LTVLIAASAMQGMGTGVG 105 (375)
T ss_dssp THHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC-CCHHHHHHHHHHHHHHH--HHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-hHHHHHHHHHHHHHHHH--Hhcc-----HHHHHHHHHHHHHHHHhh
Confidence 356889999999999999999999999999876 43455555444433222 1111 245677889999999999
Q ss_pred hhhhHhHHHHhcc-CChhhhHHHHHHHHHHHHHHHHHhhhhh
Q 021469 236 NTQLSALLGILFK-HDTEGAFAQLKVWQCASIAVVFFIGPYI 276 (312)
Q Consensus 236 ~t~~~~i~g~~~~-~~~~~afa~~~~~qs~g~ai~f~~~~~l 276 (312)
+.....++.+.+| +++.++++......++|..++-.+.+.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 147 (375)
T 2gfp_A 106 GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLL 147 (375)
T ss_dssp HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999986 4556899999999999999998887764
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.24 E-value=3.7e-05 Score=73.45 Aligned_cols=134 Identities=12% Similarity=0.022 Sum_probs=92.9
Q ss_pred cchhhHHHHHHhHHHHHHHHHHhhhhcCC-CChhhHHHHHHHHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHhhhhH
Q 021469 156 VSGVGGAMAVYGAFDAICSLAAGRLTTGL-PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGV 234 (312)
Q Consensus 156 ~~~~g~v~~~~g~~~~ig~~~~G~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~ 234 (312)
....|.+...+.++..+++.+.|++.||+ +||+ .+.++.++...+.++.. +.+. +.+..++..++.|++.+.
T Consensus 53 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~-~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~l~g~~~~~ 125 (524)
T 2xut_A 53 GAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN-TILWLSLIYCVGHAFLA--IFEH----SVQGFYTGLFLIALGSGG 125 (524)
T ss_dssp TTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-HHHHHHHHHHHHHHHHH--HTSS----CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHH--Hhcc----cHHHHHHHHHHHHHhccc
Confidence 35678999999999999999999999999 9876 44555555544443322 2221 134567778899999999
Q ss_pred HhhhhHhHHHHhccCCh-h---hhHHHHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHHHHHHHHH
Q 021469 235 LNTQLSALLGILFKHDT-E---GAFAQLKVWQCASIAVVFFIGPYIS----LQAMLIVMVVGICVALVGI 296 (312)
Q Consensus 235 ~~t~~~~i~g~~~~~~~-~---~afa~~~~~qs~g~ai~f~~~~~l~----~~~~~~il~~~~~~~~~~~ 296 (312)
.......++++.+|+++ . ..++.+....++|.+++-.+...+. ..+.+++..++.+++.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997644 2 3456688888999888887766542 3333444444444444433
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.55 E-value=0.00073 Score=63.62 Aligned_cols=114 Identities=11% Similarity=-0.061 Sum_probs=80.4
Q ss_pred hhhHHHHHHhHHHHHHHHHHhhhhcCCCChhhHHHHHHHHHHHHHHHHHhcccCCC--------CC-----CCchHHHHH
Q 021469 158 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTS--------GV-----LGTLYPLIM 224 (312)
Q Consensus 158 ~~g~v~~~~g~~~~ig~~~~G~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-----~~~~~~~~~ 224 (312)
..|++...+-++.++|+++.|++.||+|||+ .+.++.++..++-+..- +.+.. .. .+.+..++.
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~-~l~~~~~l~~i~~i~~a--~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRD-SLKIAAVLFFISGVGSA--WPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHH--CTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHH--HHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 4566777788899999999999999999775 55566555544333221 11100 00 012346777
Q ss_pred HHHHHhhhhHHhhhhHhHHHHhccCCh-hhhHHHHHHHHHHHHHHHHHhhh
Q 021469 225 AALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGP 274 (312)
Q Consensus 225 ~~l~G~~d~~~~t~~~~i~g~~~~~~~-~~afa~~~~~qs~g~ai~f~~~~ 274 (312)
-++.|++-+......+.++++..|.+. ....+........|..++.....
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~ 183 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNY 183 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcch
Confidence 899999999999999999999987654 56778888888888887777654
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.03 E-value=0.00026 Score=65.95 Aligned_cols=73 Identities=14% Similarity=0.110 Sum_probs=45.8
Q ss_pred HhhcChhhHHHHHHHHhhhhHhhhhhhcccccccccccc--cchhhHHHHHHhHHHHHHHHHHhhhhcCCCChhhH
Q 021469 117 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFI 190 (312)
Q Consensus 117 ~~~~~~~~lll~p~~~~~G~~~~f~~~~~~~~~~s~~lg--~~~~g~v~~~~g~~~~ig~~~~G~l~d~~~~~~~~ 190 (312)
+.++||+...+....+...+..+......+. +..+.+| ..++|.++..+.++..+++.+.|++.||+|||+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l 76 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPI-WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL 76 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHH-HHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4678888765554433332222222222211 1112223 35689999999999999999999999999987644
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=28.85 E-value=18 Score=18.62 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=9.9
Q ss_pred HHhhhhcCCCChh
Q 021469 176 AAGRLTTGLPSIT 188 (312)
Q Consensus 176 ~~G~l~d~~~~~~ 188 (312)
+.|+|.++++|+.
T Consensus 2 lfgklikkfgrka 14 (26)
T 2g9p_A 2 LFGKLIKKFGRKA 14 (26)
T ss_dssp HHHHHHHHHTSHH
T ss_pred cHHHHHHHHhHHH
Confidence 4588888898764
Done!