BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021470
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/312 (58%), Positives = 243/312 (77%), Gaps = 2/312 (0%)
Query: 2 EKSKVLIIGGTGYLGKRLVKASLALGHETYVLHRPEIGVDIEKVQMLLSFKEQGAKLVSG 61
+KS+VLI+GGTGY+GKR+V AS++LGH TYVL RPE+ +I+KVQMLL FK+ GAKL+
Sbjct: 3 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEA 62
Query: 62 SFNDYQSLVNAVKLVDVVICAISGVHIRSHQILLQLKLVDAIKEAGNVKRFLPSEFGTDP 121
S +D+Q LV+A+K VDVVI A++G + SH IL QLKLV+AIKEAGN+KRFLPSEFG DP
Sbjct: 63 SLDDHQRLVDALKQVDVVISALAG-GVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDP 121
Query: 122 AKMANAMEPGRVTFDDKMVVRKAIEDAGIPFTYVSANCFAGYFLGGLCQ-PGSILPSKDS 180
M +A++PG +TF DK VR+AIE A IP+TYVS+N FAGYF G L Q G ++P +D
Sbjct: 122 DIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDK 181
Query: 181 VVLLGDGNPKAIYVDEDDIAMYTMKAINDPRTLNRTMYLRPPKNILSQREVVETWEKLIG 240
V++ GDGN K I+VDEDD+ YT+K+I+DP+TLN+TMY+RPP NILSQ+EV++ WE+L
Sbjct: 182 VLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSE 241
Query: 241 KTLQKSSISKEEFLASMKEQNYAGQVGLTHYYHVCYEGCLTNFEIGNEGVEASQLYPEIK 300
+ L K IS ++FLA MK+++Y ++ H Y + + G L NFEIG +EA++LYPE+K
Sbjct: 242 QNLDKIYISSQDFLADMKDKSYEEKIVRCHLYQIFFRGDLYNFEIGPNAIEATKLYPEVK 301
Query: 301 YTTVEEYLRRYL 312
Y T++ YL RY+
Sbjct: 302 YVTMDSYLERYV 313
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 313 bits (801), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 155/311 (49%), Positives = 211/311 (67%), Gaps = 7/311 (2%)
Query: 3 KSKVLIIGGTGYLGKRLVKASLALGHETYVLHRPEIGV-DIEKVQMLLSFKEQGAKLVSG 61
+S++L+IG TGY+G+ + KASL LGH T++L R + EK Q+L SFK GA +V G
Sbjct: 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHG 63
Query: 62 SFNDYQSLVNAVKLVDVVICAISGVHIRSHQILLQLKLVDAIKEAGNVKRFLPSEFGTDP 121
S +D+ SLV AVK VDVVI + + I S Q+ ++ AIKE G VKRF PSEFG D
Sbjct: 64 SIDDHASLVEAVKNVDVVISTVGSLQIES-----QVNIIKAIKEVGTVKRFFPSEFGND- 117
Query: 122 AKMANAMEPGRVTFDDKMVVRKAIEDAGIPFTYVSANCFAGYFLGGLCQPGSILPSKDSV 181
+A+EP + F+ K VR+AIE GIP+TYVS+NCFAGYFL L Q G P +D V
Sbjct: 118 VDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAGYFLRSLAQAGLTAPPRDKV 177
Query: 182 VLLGDGNPKAIYVDEDDIAMYTMKAINDPRTLNRTMYLRPPKNILSQREVVETWEKLIGK 241
V+LGDGN + ++V E+DI +T+KA++DPRTLN+T+YLR P N LS E+V WEK I K
Sbjct: 178 VILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTLSLNELVALWEKKIDK 237
Query: 242 TLQKSSISKEEFLASMKEQNYAGQVGLTHYYHVCYEGCLTNFEIGNEGVEASQLYPEIKY 301
TL+K+ + +EE L + + + + + + + +G TNFEIG GVEASQLYP++KY
Sbjct: 238 TLEKAYVPEEEVLKLIADTPFPANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKY 297
Query: 302 TTVEEYLRRYL 312
TTV+EYL ++
Sbjct: 298 TTVDEYLSNFV 308
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 249 bits (635), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 203/313 (64%), Gaps = 10/313 (3%)
Query: 3 KSKVLIIGGTGYLGKRLVKASLALGHETYVLHRPEI-GVDIE-KVQMLLSFKEQGAKLVS 60
++K+LI+G TG +G+ +V AS+ G+ TY L R I + E K +++ +++ G L+
Sbjct: 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLE 61
Query: 61 GSFNDYQSLVNAVKLVDVVICAISGVHIRSHQILLQLKLVDAIKEAGNVKRFLPSEFGTD 120
G ND+++LV A+K VD+VICA + I Q+K++ AIKEAGNVK+F PSEFG D
Sbjct: 62 GDINDHETLVKAIKQVDIVICAAGRLLIED-----QVKIIKAIKEAGNVKKFFPSEFGLD 116
Query: 121 PAKMANAMEPGRVTFDDKMVVRKAIEDAGIPFTYVSANCFAGYFLGGLCQPGSILPSKDS 180
+ +A+EP R F++K +R+ IE G+P+TY+ + F GYFL L Q + P +D
Sbjct: 117 VDRH-DAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHAFTGYFLRNLAQLDATDPPRDK 175
Query: 181 VVLLGDGNPKAIYVDEDDIAMYTMKAINDPRTLNRTMYLRPPKNILSQREVVETWEKLIG 240
VV+LGDGN K YV E D+ +T++A NDP TLN+ +++R PKN L+Q EV+ WEK IG
Sbjct: 176 VVILGDGNVKGAYVTEADVGTFTIRAANDPNTLNKAVHIRLPKNYLTQNEVIALWEKKIG 235
Query: 241 KTLQKSSISKEEFLASMKEQNYAGQVGLTHYYHVCYEGCLTNFEIG-NEGVEASQLYPEI 299
KTL+K+ +S+E+ L ++E ++ L Y+ +G +EI + +EAS+ YP++
Sbjct: 236 KTLEKTYVSEEQVLKDIQESSFPHNYLLALYHSQQIKGDAV-YEIDPAKDIEASEAYPDV 294
Query: 300 KYTTVEEYLRRYL 312
YTT +EYL +++
Sbjct: 295 TYTTADEYLNQFV 307
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 233 bits (595), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 187/306 (61%), Gaps = 13/306 (4%)
Query: 3 KSKVLIIGGTGYLGKRLVKASLALGHETYVLHRPEIGVDIEKVQMLLSFKEQGAKLVSGS 62
KSK+LI GGTGY+G +VK SL LGH TYV RP + K +L F+ GA +V G
Sbjct: 7 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRP----NSSKTTLLDEFQSLGAIIVKGE 62
Query: 63 FNDYQSLVNAVKLVDVVICAISGVHIRSHQILLQLKLVDAIKEAGNVKRFLPSEFGTDPA 122
++++ LV +K VDVVI A++ QIL Q K+++AIK AGN+KRFLPS+FG +
Sbjct: 63 LDEHEKLVELMKKVDVVISALA-----FPQILDQFKILEAIKVAGNIKRFLPSDFGVEED 117
Query: 123 KMANAMEPGRVTFDDKMVVRKAIEDAGIPFTYVSANCFAGYFLGGLCQPGSILPSKDSVV 182
++ NA+ P + K ++R+AIE+A IP+TYVSANCFA YF+ L +P KD +
Sbjct: 118 RI-NALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRPYD---PKDEIT 173
Query: 183 LLGDGNPKAIYVDEDDIAMYTMKAINDPRTLNRTMYLRPPKNILSQREVVETWEKLIGKT 242
+ G G K E DI +YT+K DPR LNR + RP NI++Q E++ WEK IGK
Sbjct: 174 VYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKK 233
Query: 243 LQKSSISKEEFLASMKEQNYAGQVGLTHYYHVCYEGCLTNFEIGNEGVEASQLYPEIKYT 302
+K + +EE +A KE + + + + +G +++ VEAS LYPE+K+T
Sbjct: 234 FKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKENDVEASTLYPELKFT 293
Query: 303 TVEEYL 308
T++E L
Sbjct: 294 TIDELL 299
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 187/306 (61%), Gaps = 13/306 (4%)
Query: 3 KSKVLIIGGTGYLGKRLVKASLALGHETYVLHRPEIGVDIEKVQMLLSFKEQGAKLVSGS 62
KSK+LI GGTGY+G +VK SL LGH TYV RP + K +L F+ GA +V G
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRP----NSSKTTLLDEFQSLGAIIVKGE 66
Query: 63 FNDYQSLVNAVKLVDVVICAISGVHIRSHQILLQLKLVDAIKEAGNVKRFLPSEFGTDPA 122
++++ LV +K VDVVI A++ QIL Q K+++AIK AGN+KRFLPS+FG +
Sbjct: 67 LDEHEKLVELMKKVDVVISALA-----FPQILDQFKILEAIKVAGNIKRFLPSDFGVEED 121
Query: 123 KMANAMEPGRVTFDDKMVVRKAIEDAGIPFTYVSANCFAGYFLGGLCQPGSILPSKDSVV 182
++ NA+ P + K ++R+AIE+A IP+TYVSANCFA YF+ L +P KD +
Sbjct: 122 RI-NALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRPYD---PKDEIT 177
Query: 183 LLGDGNPKAIYVDEDDIAMYTMKAINDPRTLNRTMYLRPPKNILSQREVVETWEKLIGKT 242
+ G G K E DI +YT+K DPR LNR + RP NI++Q E++ WEK IGK
Sbjct: 178 VYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKK 237
Query: 243 LQKSSISKEEFLASMKEQNYAGQVGLTHYYHVCYEGCLTNFEIGNEGVEASQLYPEIKYT 302
+K + +EE +A KE + + + + +G +++ VEAS LYPE+K+T
Sbjct: 238 FKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKENDVEASTLYPELKFT 297
Query: 303 TVEEYL 308
T++E L
Sbjct: 298 TIDELL 303
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 232 bits (591), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/306 (42%), Positives = 187/306 (61%), Gaps = 13/306 (4%)
Query: 3 KSKVLIIGGTGYLGKRLVKASLALGHETYVLHRPEIGVDIEKVQMLLSFKEQGAKLVSGS 62
KSK+LI GGTGY+G +VK SL LGH TYV RP + K +L F+ GA +V G
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRP----NSSKTTLLDEFQSLGAIIVKGE 66
Query: 63 FNDYQSLVNAVKLVDVVICAISGVHIRSHQILLQLKLVDAIKEAGNVKRFLPSEFGTDPA 122
++++ LV +K VDVVI A++ QIL Q K+++AIK AGN+KRFLPS+FG +
Sbjct: 67 LDEHEKLVELMKKVDVVISALA-----FPQILDQFKILEAIKVAGNIKRFLPSDFGVEED 121
Query: 123 KMANAMEPGRVTFDDKMVVRKAIEDAGIPFTYVSANCFAGYFLGGLCQPGSILPSKDSVV 182
++ NA+ P + + ++R+AIE+A IP+TYVSANCFA YF+ L +P KD +
Sbjct: 122 RI-NALPPFEALIERQRMIRRAIEEANIPYTYVSANCFASYFINYLLRPYD---PKDEIT 177
Query: 183 LLGDGNPKAIYVDEDDIAMYTMKAINDPRTLNRTMYLRPPKNILSQREVVETWEKLIGKT 242
+ G G K E DI +YT+K DPR LNR + RP NI++Q E++ WEK IGK
Sbjct: 178 VYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKK 237
Query: 243 LQKSSISKEEFLASMKEQNYAGQVGLTHYYHVCYEGCLTNFEIGNEGVEASQLYPEIKYT 302
+K + +EE +A KE + + + + +G +++ VEAS LYPE+K+T
Sbjct: 238 FKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKENDVEASTLYPELKFT 297
Query: 303 TVEEYL 308
T++E L
Sbjct: 298 TIDELL 303
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 231 bits (588), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 130/306 (42%), Positives = 186/306 (60%), Gaps = 13/306 (4%)
Query: 3 KSKVLIIGGTGYLGKRLVKASLALGHETYVLHRPEIGVDIEKVQMLLSFKEQGAKLVSGS 62
KSK+LI GGTGY+G +VK SL LGH TYV RP + K +L F+ GA +V G
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRP----NSSKTTLLDEFQSLGAIIVKGE 66
Query: 63 FNDYQSLVNAVKLVDVVICAISGVHIRSHQILLQLKLVDAIKEAGNVKRFLPSEFGTDPA 122
++++ LV +K VDVVI A++ Q L Q K+++AIK AGN+KRFLPS+FG +
Sbjct: 67 LDEHEKLVELMKKVDVVISALA-----VPQYLDQFKILEAIKVAGNIKRFLPSDFGVEED 121
Query: 123 KMANAMEPGRVTFDDKMVVRKAIEDAGIPFTYVSANCFAGYFLGGLCQPGSILPSKDSVV 182
++ NA+ P + K ++R+AIE+A IP+TYVSANCFA YF+ L +P KD +
Sbjct: 122 RI-NALPPFEALIERKRMIRRAIEEANIPYTYVSANCFASYFINYLLRPYD---PKDEIT 177
Query: 183 LLGDGNPKAIYVDEDDIAMYTMKAINDPRTLNRTMYLRPPKNILSQREVVETWEKLIGKT 242
+ G G K E DI +YT+K DPR LNR + RP NI++Q E++ WEK IGK
Sbjct: 178 VYGTGEAKFAMNYEQDIGLYTIKVATDPRALNRVVIYRPSTNIITQLELISRWEKKIGKK 237
Query: 243 LQKSSISKEEFLASMKEQNYAGQVGLTHYYHVCYEGCLTNFEIGNEGVEASQLYPEIKYT 302
+K + +EE +A KE + + + + +G +++ VEAS LYPE+K+T
Sbjct: 238 FKKIHVPEEEIVALTKELPEPENIPIAILHCLFIDGATMSYDFKENDVEASTLYPELKFT 297
Query: 303 TVEEYL 308
T++E L
Sbjct: 298 TIDELL 303
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 110/309 (35%), Positives = 181/309 (58%), Gaps = 7/309 (2%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVLHRP-EIGVDIEKVQMLLSFKEQGAKLVSGSF 63
K++I GGTGY+GK +V+ASL+ H T++ RP VQ+ F+ G ++ G
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 64 NDYQSLVNAVKLVDVVICAISGVHIRSHQILLQLKLVDAIKEAGNVKRFLPSEFGTDPAK 123
+++ +V+ +K VD+VI A+ I S Q+ +++AIK AGN+KRFLPS+FG + +
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFPMISS-----QIHIINAIKAAGNIKRFLPSDFGCEEDR 120
Query: 124 MANAMEPGRVTFDDKMVVRKAIEDAGIPFTYVSANCFAGYFLGGLCQPGSILPSKDSVVL 183
+ + P + K ++R+AIE A +P+TYVSANCF YF+ L P D +V+
Sbjct: 121 I-KPLPPFESVLEKKRIIRRAIEAAALPYTYVSANCFGAYFVNYLLHPSPHPNRNDDIVI 179
Query: 184 LGDGNPKAIYVDEDDIAMYTMKAINDPRTLNRTMYLRPPKNILSQREVVETWEKLIGKTL 243
G G K + E+DIA YT+K DPR NR + RPPKNI+SQ E++ WE G +
Sbjct: 180 YGTGETKFVLNYEEDIAKYTIKVACDPRCCNRIVIYRPPKNIISQNELISLWEAKSGLSF 239
Query: 244 QKSSISKEEFLASMKEQNYAGQVGLTHYYHVCYEGCLTNFEIGNEGVEASQLYPEIKYTT 303
+K + E+ + +E + ++ + + +G L ++E+ + +EAS LYPE+++T+
Sbjct: 240 KKVHMPDEQLVRLSQELPQPQNIPVSILHSIFVKGDLMSYEMRKDDIEASNLYPELEFTS 299
Query: 304 VEEYLRRYL 312
++ L ++
Sbjct: 300 IDGLLDLFI 308
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/313 (36%), Positives = 177/313 (56%), Gaps = 10/313 (3%)
Query: 3 KSKVLIIGGTGYLGKRLVKASLALGHETYVLHRPEIGVDIEKVQMLLSFKEQGAKLVSGS 62
K +VLI G TG++G+ + ASL TY+L RP K ++ + +++GA +V G
Sbjct: 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPG-PRSPSKAKIFKALEDKGAIIVYGL 68
Query: 63 FNDYQSLVNAVKL--VDVVICAISGVHIRSHQILLQLKLVDAIKEAGNVKRFLPSEFGTD 120
N+ +++ +K +D+V+ + G IL Q+ LV A+K G +KRFLPSEFG D
Sbjct: 69 INEQEAMEKILKEHEIDIVVSTVGG-----ESILDQIALVKAMKAVGTIKRFLPSEFGHD 123
Query: 121 PAKMANAMEPGRVTFDDKMVVRKAIEDAGIPFTYVSANCFAGYFLGGLCQPGSILPSKDS 180
A+ +EPG + +K VR+ +E++GIPFTY+ N A + P +LP D
Sbjct: 124 -VNRADPVEPGLNMYREKRRVRQLVEESGIPFTYICCNSIASWPYYNNIHPSEVLPPTDF 182
Query: 181 VVLLGDGNPKAIYVDEDDIAMYTMKAINDPRTLNRTMYLRPPKNILSQREVVETWEKLIG 240
+ GDGN KA +V DI +TMK ++D RTLN++++ RP N L+ E+ WEK IG
Sbjct: 183 FQIYGDGNVKAYFVAGTDIGKFTMKTVDDVRTLNKSVHFRPSCNCLNINELASVWEKKIG 242
Query: 241 KTLQKSSISKEEFLASMKEQNYAGQVGLTHYYHVCYEGCLTNFEI-GNEGVEASQLYPEI 299
+TL + ++++++ LA+ E V + + +GC NF I G E VE + LYPE
Sbjct: 243 RTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQVNFSIDGPEDVEVTTLYPED 302
Query: 300 KYTTVEEYLRRYL 312
+ TVEE Y+
Sbjct: 303 SFRTVEECFGEYI 315
>pdb|1XGK|A Chain A, Crystal Structure Of N12g And A18g Mutant Nmra
Length = 352
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 19/168 (11%)
Query: 2 EKSKVLIIGGTGYLGKRLVKASLALGHETYVLHRPEIGVDIEKVQMLLSFKEQGAKLVSG 61
+K + ++G TG G L++ + A+GH G+ E++Q + + L G
Sbjct: 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPN-----VTLFQG 58
Query: 62 SFNDYQSLVNAVKLVDVV-----ICAISGVHIRSHQILLQLKLVDAIKEAGNVKRFLPSE 116
L+N V L+D + + I+ +I + L DA K AG ++ ++
Sbjct: 59 ------PLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYI--- 109
Query: 117 FGTDPAKMANAMEPGRVTFDDKMVVRKAIEDAGIPFTYVSANCFAGYF 164
+ + P P + K V + G+P T+V A + F
Sbjct: 110 YSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNF 157
>pdb|1K6I|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Trigonal Form)
pdb|1K6J|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Monoclinic Form)
pdb|1K6J|B Chain B, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator (Monoclinic Form)
pdb|1K6X|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator In Complex With Nad At 1.5 A Resolution
(Trigonal Form)
pdb|1TI7|A Chain A, Crystal Structure Of Nmra, A Negative Transcriptional
Regulator, In Complex With Nadp At 1.7a Resolution
pdb|2VUS|A Chain A, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|B Chain B, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|C Chain C, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|D Chain D, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|E Chain E, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|F Chain F, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|G Chain G, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUS|H Chain H, Crystal Structure Of Unliganded Nmra-Area Zinc Finger
Complex
pdb|2VUT|A Chain A, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|B Chain B, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|C Chain C, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|D Chain D, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|E Chain E, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|F Chain F, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|G Chain G, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUT|H Chain H, Crystal Structure Of Nad-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|A Chain A, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|B Chain B, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|C Chain C, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|D Chain D, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|E Chain E, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|F Chain F, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|G Chain G, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
pdb|2VUU|H Chain H, Crystal Structure Of Nadp-Bound Nmra-Area Zinc Finger
Complex
Length = 352
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 19/168 (11%)
Query: 2 EKSKVLIIGGTGYLGKRLVKASLALGHETYVLHRPEIGVDIEKVQMLLSFKEQGAKLVSG 61
+K + ++ TG L++ + A+GH G+ E++Q + + L G
Sbjct: 4 QKKTIAVVNATGRQAASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPN-----VTLFQG 58
Query: 62 SFNDYQSLVNAVKLVDVV-----ICAISGVHIRSHQILLQLKLVDAIKEAGNVKRFLPSE 116
L+N V L+D + + I+ +I + L DA K AG ++ ++
Sbjct: 59 ------PLLNNVPLMDTLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYI--- 109
Query: 117 FGTDPAKMANAMEPGRVTFDDKMVVRKAIEDAGIPFTYVSANCFAGYF 164
+ + P P + K V + G+P T+V A + F
Sbjct: 110 YSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNF 157
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 1 MEKSKVLIIGGTGYLGKRLVKASLAL--GHETYVLHRPEIGVDIEKVQMLLSFKEQGAKL 58
++ +LI GGTG GK V+ L + V R E +++ +M + F + +
Sbjct: 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDE----LKQSEMAMEFNDPRMRF 74
Query: 59 VSGSFNDYQSLVNAVKLVDVVICAISGVHI 88
G D + L A++ VD+ I A + H+
Sbjct: 75 FIGDVRDLERLNYALEGVDICIHAAALKHV 104
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 3 KSKVLIIGGTGYLGKRLVKASLALGHETYVL 33
K ++LI GG G++G L +A +A G E VL
Sbjct: 7 KHRILITGGAGFIGGHLARALVASGEEVTVL 37
>pdb|2RIG|A Chain A, Crystal Structure Of Recombinant Rabbit Interferon-Gamma
At 2.7-Angstroms Resolution
Length = 144
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 88 IRSHQILLQLKLVDAIKEAGNVKRFLPS--------EFGTDPAKMANAMEPGRVTFDDKM 139
I+S + KL D +K+ +K+ + S F ++ KM + R++ DD++
Sbjct: 45 IQSQIVSFYFKLFDNLKDHEVIKKSMESIKEDIFVKFFNSNLTKMDDFQNLTRISVDDRL 104
Query: 140 VVRKAIEDAGIPFTYVS 156
V RKA+ + ++S
Sbjct: 105 VQRKAVSELSNVLNFLS 121
>pdb|1XUB|A Chain A, Structure And Function Of The Phenazine Biosynthetic
Protein Phzf From Pseudomonas Fluorescens
Length = 298
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 186 DGNPKAIYVDEDDIAMYTMKAINDPRTLNRTMYLRPPKN 224
+GNP A++ D DD+ M+ I L+ + ++ P+N
Sbjct: 36 EGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRN 74
>pdb|1U1W|A Chain A, Structure And Function Of Phenazine-biosynthesis Protein
Phzf From Pseudomonas Fluorescens 2-79
pdb|1U1W|B Chain B, Structure And Function Of Phenazine-biosynthesis Protein
Phzf From Pseudomonas Fluorescens 2-79
pdb|1U1X|A Chain A, Structure And Function Of Phenazine-Biosynthesis Protein
Phzf From Pseudomonas Fluorescens 2-79
pdb|1U1X|B Chain B, Structure And Function Of Phenazine-Biosynthesis Protein
Phzf From Pseudomonas Fluorescens 2-79
pdb|1XUA|A Chain A, Structure And Function Of The Phenazine Biosynthetic
Protein Phzf From Pseudomonas Fluorescens
pdb|1XUA|B Chain B, Structure And Function Of The Phenazine Biosynthetic
Protein Phzf From Pseudomonas Fluorescens
Length = 298
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 186 DGNPKAIYVDEDDIAMYTMKAINDPRTLNRTMYLRPPKN 224
+GNP A++ D DD+ M+ I L+ + ++ P+N
Sbjct: 36 EGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRN 74
>pdb|1T6K|A Chain A, Crystal Structure Of Phzf From Pseudomonas Fluorescens
2-79
Length = 278
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 186 DGNPKAIYVDEDDIAMYTMKAINDPRTLNRTMYLRPPKN 224
+GNP A++ D DD+ M+ I L+ + ++ P+N
Sbjct: 16 EGNPVAVFFDADDLPPAQMQRIAREMNLSESTFVLKPRN 54
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmg In Complex With Nad And Udp
Length = 330
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVL 33
++LI GG G LG L++ L GHE V+
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQGHEILVI 50
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 3 KSKVLIIGGTGYLGKRLVKASLALGHETYVLHR-PEIGVDIEKVQMLLSFKEQG-AKLVS 60
K ++GGTG++ LVK L G+ R P+ + +KV LL +E G K+
Sbjct: 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPD---NQKKVSHLLELQELGDLKIFR 65
Query: 61 GSFNDYQSLVNAVKLVDVVICAISGVHIRSH 91
D S + D V + VH S
Sbjct: 66 ADLTDELSFEAPIAGCDFVFHVATPVHFASE 96
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Query: 1 MEKSKVLIIGGTGYLGKRLVKASLALGHETYVLHRPEIGVDIEKVQMLLSFKEQGAKLVS 60
M K+L+ GG G++G ++ L + V++ ++G + + V
Sbjct: 1 MHSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVK 60
Query: 61 GSFNDYQSLVNAVKLVDVVICAISGVH----IRSHQILLQLKLVDAIKEAGNVKRFLP 114
G DY+ + V+ VD V+ + H I S +I L ++ +++R P
Sbjct: 61 GDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENP 118
>pdb|4B4O|A Chain A, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|B Chain B, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|C Chain C, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|D Chain D, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|E Chain E, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|F Chain F, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|G Chain G, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
pdb|4B4O|H Chain H, Crystal Structure Of Human Epimerase Family Protein
Sdr39u1 (Isoform2) With Nadph
Length = 298
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVLHR 35
+VL+ GGTG++G L + A GHE ++ R
Sbjct: 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSR 32
>pdb|1JAX|A Chain A, Structure Of Coenzyme F420h2:nadp+ Oxidoreductase (Fno)
pdb|1JAX|B Chain B, Structure Of Coenzyme F420h2:nadp+ Oxidoreductase (Fno)
pdb|1JAY|A Chain A, Structure Of Coenzyme F420h2:nadp+ Oxidoreductase (Fno)
With Its Substrates Bound
pdb|1JAY|B Chain B, Structure Of Coenzyme F420h2:nadp+ Oxidoreductase (Fno)
With Its Substrates Bound
Length = 212
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVLHR 35
+V ++GGTG LGK L LGHE V R
Sbjct: 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSR 32
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 2 EKSKVLIIGGTGYLGKRLVKASLALGHETYVL 33
++ ++LI GG G++G L + GHE V+
Sbjct: 4 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVV 35
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 3 KSKVLIIGGTGYLGKRLVKASLALGH--ETYVLHRPEIGVDI 42
K +V + GGTG+LG ++K+ L G+ T + PE D+
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDV 42
>pdb|2FYN|B Chain B, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|E Chain E, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|H Chain H, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|K Chain K, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|N Chain N, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|Q Chain Q, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2QJY|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|E Chain E, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|H Chain H, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|K Chain K, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|N Chain N, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|Q Chain Q, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
Length = 269
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 117 FGTDPAKMANAMEPGRVTFDDKMVVRKAIEDAGIPFTYVSANCFAGYFLGGLCQPGSILP 176
F +P K A EP D +A ++ +P T AN + P ++
Sbjct: 138 FPEEPPKCAEGHEP------DGFYYNRAFQNGSVPDTCKDANGVKTTAGSWIAMPPPLM- 190
Query: 177 SKDSVVLLGDGNPKAIYVDEDDIAMYTMKAINDPRTLNR 215
D +V DG+ +++ +D++ + M A +P+ + R
Sbjct: 191 --DDLVEYADGHDASVHAMAEDVSAFLMWAA-EPKLMAR 226
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica
Enzyme Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 MEKSKVLIIGGTGYLGKRLVKASLALG 27
+ + V+++GG G++G LVK L LG
Sbjct: 30 LANTNVMVVGGAGFVGSNLVKRLLELG 56
>pdb|2QJK|B Chain B, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|E Chain E, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|H Chain H, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|K Chain K, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|N Chain N, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|Q Chain Q, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJP|B Chain B, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|E Chain E, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|H Chain H, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|K Chain K, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
Length = 256
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 117 FGTDPAKMANAMEPGRVTFDDKMVVRKAIEDAGIPFTYVSANCFAGYFLGGLCQPGSILP 176
F +P K A EP D +A ++ +P T AN + P ++
Sbjct: 138 FPEEPPKCAEGHEP------DGFYYNRAFQNGSVPDTCKDANGVKTTAGSWIAMPPPLM- 190
Query: 177 SKDSVVLLGDGNPKAIYVDEDDIAMYTMKAINDPRTLNR 215
D +V DG+ +++ +D++ + M A +P+ + R
Sbjct: 191 --DDLVEYADGHDASVHAMAEDVSAFLMWAA-EPKLMAR 226
>pdb|3U9L|A Chain A, The Crystal Structure Of
3-Oxoacyl-[acyl-Carrier-Protein] Reductase (Nadph) From
Sinorhizobium Meliloti
Length = 324
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 3 KSKVLIIGGTGYLGKRLVKASLALGHETYVLHRPEIGVDIEKVQMLLSFKEQGAKLVSGS 62
K +LI G + G+ +A GH Y R +G + V+ + F +
Sbjct: 5 KKIILITGASSGFGRLTAEALAGAGHRVYASXRDIVGRNASNVEAIAGFARDNDVDLRTL 64
Query: 63 FNDYQSLVNAVKLVDVVI 80
D QS V+ + +D +I
Sbjct: 65 ELDVQSQVSVDRAIDQII 82
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVL 33
+VL+ GG G++G +V+ LA G E VL
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVL 30
>pdb|1HDR|A Chain A, The Crystallographic Structure Of A Human
Dihydropteridine Reductase Nadh Binary Complex
Expressed In Escherichia Coli By A Cdna Constructed
From Its Rat Homologue
Length = 244
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 2 EKSKVLIIGGTGYLGKRLVKASLALGHETY---VLHRPEIGVDIEKVQMLLSFKEQGAKL 58
E +VL+ GG G LG R V+A A V+ E I V+M SF EQ ++
Sbjct: 9 EARRVLVYGGRGALGSRCVQAFRARNWWVASVDVVENEEASASI-IVKMTDSFTEQADQV 67
Query: 59 VSGSFNDYQSLVNAVKLVDVVICAISG 85
+ + L+ K VD ++C G
Sbjct: 68 TA----EVGKLLGEEK-VDAILCVAGG 89
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 2 EKSKVLIIGGTGYLGKRLVKASLALGHETYVL 33
++ ++LI GG G++G L GHE V+
Sbjct: 26 DRKRILITGGAGFVGSHLTDKLXXDGHEVTVV 57
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 101 DAIKEAGNVKRFL--PSEFGTDPAKMANAM----EPGRVTFDDKMVVRKAIEDAGIPFTY 154
+AI+E V FL PS+F A+M + PG ++ R +A +PF +
Sbjct: 23 EAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPG---TGKTLLARAVAGEANVPFFH 79
Query: 155 VSANCFAGYFLG 166
+S + F F+G
Sbjct: 80 ISGSDFVELFVG 91
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVL 33
+VL+ GG+GY+G L GH+ +L
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Galactose
Length = 338
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVL 33
+VL+ GG+GY+G L GH+ +L
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVL 33
+VL+ GG+GY+G L GH+ +L
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Glucose
Length = 338
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVL 33
+VL+ GG+GY+G L GH+ +L
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVL 33
+VL+ GG+GY+G L GH+ +L
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVL 33
+VL+ GG+GY+G L GH+ +L
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 101 DAIKEAGNVKRFL--PSEFGTDPAKMANAM----EPGRVTFDDKMVVRKAIEDAGIPFTY 154
+AI+E V FL PS+F A+M + PG ++ R +A +PF +
Sbjct: 23 EAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGA---TLLARAVAGEANVPFFH 79
Query: 155 VSANCFAGYFLG 166
+S + F F+G
Sbjct: 80 ISGSDFVELFVG 91
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVL 33
+VL+ GG+GY+G L GH+ +L
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli,
Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVL 33
+VL+ GG+GY+G L GH+ +L
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVL 33
+VL+ GG+GY+G L GH+ +L
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL 30
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVLHRPEIGVDIEKVQMLLSFKEQGAKLVSGSFN 64
K ++G TG LG +A A GH+ ++HRP ++Q L++ E ++
Sbjct: 15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPS-----SQIQR-LAYLEPECRVA--EML 66
Query: 65 DYQSLVNAVKLVDVVI 80
D+ L A++ +D VI
Sbjct: 67 DHAGLERALRGLDGVI 82
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 5 KVLIIGGTGYLGKRLVKASLALGHETYVL 33
+VL+ GG+GY+G L GH+ +L
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIIL 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,479,704
Number of Sequences: 62578
Number of extensions: 393398
Number of successful extensions: 1200
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 49
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)