BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021473
(312 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M2D2|YU88_ARATH UPF0187 protein At3g61320, chloroplastic OS=Arabidopsis thaliana
GN=At3g61320 PE=2 SV=2
Length = 410
Score = 313 bits (802), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 176/273 (64%), Positives = 213/273 (78%), Gaps = 3/273 (1%)
Query: 14 SHFIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQ-SQSETKTLTLISVLRAIPDW 72
S+F ++LL+ + I + F KS N + S ES S ET T LI +LRA+PDW
Sbjct: 11 SNFTHRSLLESRFPIFSTGF-RKSVNLKPPRVSSGPESNDSGHETLTDKLIHLLRAVPDW 69
Query: 73 ADRVKERGVKQKRTLYSHEKWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVI 132
AD +KERG++QKR+LY+HEKWVEHRSSLRHVRHLLSS SSRVILSLIPPV FT VAVVI
Sbjct: 70 ADEIKERGMQQKRSLYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPPVFFFTSVAVVI 129
Query: 133 ASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIA 192
ASYNSA+ LPG P+LR+SSLPYQLTAPALALLLVFRTEASYSR+ +G+KAW IIA
Sbjct: 130 ASYNSAVALDWLPGIFPILRSSSLPYQLTAPALALLLVFRTEASYSRYEEGRKAWVGIIA 189
Query: 193 GTNDFATMVISGTDNSTDE-CIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDL 251
GTND A VI D+S DE IKD LLRYI AFPVALK HVI SD++ DL++L++ADDL
Sbjct: 190 GTNDLARQVICSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIARDLRNLIEADDL 249
Query: 252 AIVLDSKHRPRCIIEFISQSLQLLNLEATKQNM 284
+++L +KHRPRC+IEFISQS+QLL L+ K+++
Sbjct: 250 SLILQAKHRPRCVIEFISQSIQLLKLDDAKRDL 282
>sp|O80832|YU87_ARATH UPF0187 protein At2g45870, chloroplastic OS=Arabidopsis thaliana
GN=At2g45870 PE=2 SV=1
Length = 410
Score = 303 bits (776), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 161/254 (63%), Positives = 205/254 (80%), Gaps = 4/254 (1%)
Query: 35 SKSPNPLTFK-TLSCLESQSQSETKTLT--LISVLRAIPDWADRVKERGVKQKRTLYSHE 91
+++P L FK SC+ S +S+ L+ LIS+L+A+P+W+D +KER ++QKR+LY+HE
Sbjct: 29 ARAPKSLHFKFNPSCVSSGPKSDDSPLSEKLISLLKAVPNWSDGIKERRMQQKRSLYTHE 88
Query: 92 KWVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVL 151
WV HRSSLRH+RH+ SS SSRVILSLIPPV FT VA++IA YNSA+D LP F PVL
Sbjct: 89 NWVRHRSSLRHLRHVSSSPSSRVILSLIPPVFFFTTVAILIAGYNSAVDLDWLPDFFPVL 148
Query: 152 RASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDE 211
RAS LPYQLTAPALALLLVFRTEASYSRF G+KAW +II+GTND A +VIS S DE
Sbjct: 149 RASPLPYQLTAPALALLLVFRTEASYSRFEQGRKAWVKIISGTNDLARLVISSVHGSGDE 208
Query: 212 -CIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQ 270
I+D+LLRYI+AFPVALK HVI SD++ DL+++++ DDL+++L SKHRPRC+I+FISQ
Sbjct: 209 LIIRDALLRYIVAFPVALKCHVIYGSDIASDLKNVIEVDDLSLILQSKHRPRCVIQFISQ 268
Query: 271 SLQLLNLEATKQNM 284
SLQLLNL++TK +M
Sbjct: 269 SLQLLNLDSTKIDM 282
>sp|Q8YSU5|Y2987_NOSS1 UPF0187 protein alr2987 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=alr2987 PE=3 SV=1
Length = 307
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 21/139 (15%)
Query: 123 IAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPA-------------LALLL 169
IAF + VI + + L G L +L YQL P L LLL
Sbjct: 11 IAFQLRGSVIGAIYKRVICCALFGVL-----VTLLYQLKIPVSQPILGSVIPSIVLGLLL 65
Query: 170 VFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNST--DECIKDSLLRYIMAFPVA 227
VFRT +Y RF +G+KAW I+ T + A + + + D K S+L ++AF VA
Sbjct: 66 VFRTNTAYDRFWEGRKAWGSIVNNTRNLARQIWVSVEEVSLKDREAKISVLNLLVAFAVA 125
Query: 228 LKGHVICDSDVSGDLQDLL 246
K H+ + ++ +L+DL+
Sbjct: 126 TKLHLRGEP-INSELEDLI 143
>sp|Q8XTY1|Y3414_RALSO UPF0187 protein RSc3414 OS=Ralstonia solanacearum (strain GMI1000)
GN=RSc3414 PE=3 SV=1
Length = 306
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 4/154 (2%)
Query: 117 SLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEAS 176
S++P ++ + I+ A+ H LP + S+ P+ L ALA+ L FR AS
Sbjct: 19 SVLPQLLPRLFLIFCISLVAMAVHVHWLP---ITVNLSTTPFSLIGIALAVFLGFRNNAS 75
Query: 177 YSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDS 236
Y R+ + +K W Q++ ++ + ++ + A P AL+ H + +
Sbjct: 76 YDRYWEARKLWGQLLNDARSMTRQALTLPRETLAAADVREFVQVLGALPHALR-HQLRRT 134
Query: 237 DVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQ 270
D DL L A V+ S++RP ++ ++ +
Sbjct: 135 DPRDDLSARLPAPLFERVMASRYRPAALMLWLGE 168
>sp|P72926|Y1024_SYNY3 UPF0187 protein sll1024 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=sll1024 PE=3 SV=2
Length = 307
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 165 LALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKD--SLLRYIM 222
L LLLVFRT +Y RF +G+KAW ++ + + ++ + + +D +L ++
Sbjct: 68 LGLLLVFRTNTAYERFWEGRKAWGTMVNTIRNLSRIIWVSVAEPSPQAHQDKIKILHLLV 127
Query: 223 AFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQ 273
AF VA K H + ++ ++ LL + D + P I +IS LQ
Sbjct: 128 AFAVATKLH-LRSQPLNEEIWALLPESGYRKLEDLNNPPLEIAFWISNYLQ 177
>sp|Q8XAZ3|YNEE_ECO57 UPF0187 protein YneE OS=Escherichia coli O157:H7 GN=yneE PE=3 SV=2
Length = 304
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 15/89 (16%)
Query: 106 LLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPAL 165
+LS +SSR++L+ + F++ + + + + L ++ + P+ + A+
Sbjct: 20 VLSKISSRLLLNFL-----FSIAVIFMLPWYTHLG----------IKFTLAPFSILGVAI 64
Query: 166 ALLLVFRTEASYSRFVDGKKAWTQIIAGT 194
A+ L FR A Y+R+V+ +K W Q++ +
Sbjct: 65 AIFLGFRNNAGYARYVEARKLWGQLMIAS 93
>sp|P76146|YNEE_ECOLI UPF0187 protein YneE OS=Escherichia coli (strain K12) GN=yneE PE=3
SV=2
Length = 304
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 15/89 (16%)
Query: 106 LLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPAL 165
+LS +SSR++L+ + F++ + + + + L ++ + P+ + A+
Sbjct: 20 VLSKISSRLLLNFL-----FSIAVIFMLPWYTHLG----------IKFTLAPFSILGVAI 64
Query: 166 ALLLVFRTEASYSRFVDGKKAWTQIIAGT 194
A+ L FR A Y+R+V+ +K W Q++ +
Sbjct: 65 AIFLGFRNNAGYARYVEARKLWGQLMIAS 93
>sp|Q8ZPI0|YNEE_SALTY UPF0187 protein YneE OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=yneE PE=3 SV=2
Length = 304
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 157 PYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGT 194
P+ + A+A+ L FR A Y+R+V+ + W Q++ +
Sbjct: 56 PFSILGVAIAIFLGFRNNACYARYVEARHLWGQLMIAS 93
>sp|Q8Z706|YNEE_SALTI UPF0187 protein YneE OS=Salmonella typhi GN=yneE PE=3 SV=2
Length = 304
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 157 PYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGT 194
P+ + A+A+ L FR A Y+R+V+ + W Q++ +
Sbjct: 56 PFSILGVAIAIFLGFRNNACYARYVEARHLWGQLMIAS 93
>sp|Q98E66|Y4386_RHILO UPF0187 protein mll4386 OS=Rhizobium loti (strain MAFF303099)
GN=mll4386 PE=3 SV=1
Length = 309
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 61/144 (42%), Gaps = 11/144 (7%)
Query: 105 HLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPA 164
L + V+ ++P + F + + VI + + L G + P+ L
Sbjct: 19 QLFFIMRGSVVPRILPQIFGFAVYSAVILALARWFELDL--GVFNIT-----PFGLVGVT 71
Query: 165 LALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAF 224
L++ L FR A+Y R+ + +K W ++ + A S + ++ +LL +AF
Sbjct: 72 LSIYLSFRNNAAYDRWWEARKLWGTLVFEIRNLARATTSLIPDPAEQ---RALLMEALAF 128
Query: 225 PVALKGHVICDSDVSGDLQDLLDA 248
L+G + +D D + +DA
Sbjct: 129 CHFLRGQ-LRKTDSIKDARAFIDA 151
>sp|Q3Z8V1|RUVB_DEHE1 Holliday junction ATP-dependent DNA helicase RuvB
OS=Dehalococcoides ethenogenes (strain 195) GN=ruvB PE=3
SV=1
Length = 349
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 246 LDADDLAIVLDSKHRPRCIIEFISQSLQLLNLEATKQNMSQRSPVFTKALVY 297
L ADD LD+ RPRC+ +FI Q NL Q QR L+Y
Sbjct: 13 LAADDAK--LDTSLRPRCLSDFIGQKRLKDNLGVAIQAAKQRGEALDHVLLY 62
>sp|P30267|Y2044_BACPE Uncharacterized protein BpOF4_10220 OS=Bacillus pseudofirmus
(strain OF4) GN=BpOF4_10220 PE=4 SV=1
Length = 463
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 88 YSHEKWVEHRSSLRHVRHLLSSLSSRVI---LSLIPPVIAFTMVAVVIASYNSALDSHLL 144
++ E+ V S ++ V+ + + V+ LIP V+A +A+++A Y S
Sbjct: 303 WALERAVATASKVKSVKGVATKGFQNVLDIWFGLIPLVMALGTIALIVAEYTSIFTYLSY 362
Query: 145 PGFLPVLRASSLPYQLTAPALALLLVF-----------RTEASYSRFVDGKKAWTQII 191
P F+P+L +P + A A ALL+ F E+ +RFV + TQ+I
Sbjct: 363 P-FVPILELLRIP-EAQAAAPALLVGFADMFLPAVVGSGIESELTRFVIAAVSMTQLI 418
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,041,979
Number of Sequences: 539616
Number of extensions: 3818547
Number of successful extensions: 10339
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 10328
Number of HSP's gapped (non-prelim): 16
length of query: 312
length of database: 191,569,459
effective HSP length: 117
effective length of query: 195
effective length of database: 128,434,387
effective search space: 25044705465
effective search space used: 25044705465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)