Query 021473
Match_columns 312
No_of_seqs 179 out of 655
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 03:14:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3781 Predicted membrane pro 100.0 1.3E-43 2.9E-48 326.9 18.6 187 101-295 7-197 (306)
2 PF01062 Bestrophin: Bestrophi 100.0 5.8E-36 1.3E-40 280.4 16.5 190 93-294 6-202 (293)
3 KOG3547 Bestrophin (Best vitel 95.9 0.061 1.3E-06 54.8 10.5 189 98-293 12-219 (450)
4 PF14023 DUF4239: Protein of u 92.0 2.2 4.8E-05 38.3 11.0 68 158-229 2-69 (209)
5 PLN02673 quinolinate synthetas 38.4 52 0.0011 35.7 5.1 51 27-77 46-103 (724)
6 PF10947 DUF2628: Protein of u 37.7 1.2E+02 0.0026 24.4 6.1 65 103-179 40-104 (108)
7 cd08816 CARD_RIG-I_1 Caspase a 37.2 83 0.0018 25.4 4.9 67 220-287 7-74 (89)
8 KOG3339 Predicted glycosyltran 34.3 46 0.00099 30.7 3.4 96 29-136 25-127 (211)
9 PF13096 CENP-P: CENP-A-nucleo 28.8 34 0.00073 30.9 1.6 20 166-185 60-79 (177)
10 PF05232 BTP: Bacterial Transm 27.5 79 0.0017 23.9 3.2 64 111-187 4-67 (67)
11 COG3086 RseC Positive regulato 27.1 1.1E+02 0.0024 27.0 4.4 64 108-189 73-136 (150)
12 PF08167 RIX1: rRNA processing 25.2 4.5E+02 0.0098 22.7 9.6 108 158-274 24-144 (165)
13 PTZ00095 40S ribosomal protein 22.9 50 0.0011 29.7 1.6 36 59-96 37-77 (169)
14 TIGR03778 VPDSG_CTERM VPDSG-CT 22.6 86 0.0019 19.8 2.1 20 154-173 4-23 (26)
15 COG5488 Integral membrane prot 22.4 1.5E+02 0.0032 26.4 4.4 17 240-256 137-153 (164)
16 PRK09333 30S ribosomal protein 20.7 59 0.0013 28.7 1.6 33 60-94 14-51 (150)
No 1
>COG3781 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.3e-43 Score=326.87 Aligned_cols=187 Identities=23% Similarity=0.345 Sum_probs=171.5
Q ss_pred hhHHHHHHhhchhhHhhhHHHHHHHHHHHHHHHHHhcccccccCCCcccccccCCchhhhHHHHHHHHHHhccchhhhhh
Q 021473 101 RHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRF 180 (312)
Q Consensus 101 R~~~~ll~~~~ssVi~~i~~~vl~~~~~A~~V~~~~~~~~~~~~~~~~p~l~~~~~p~sLlG~ALsLLLvFRtNtAYdRw 180 (312)
.||+.+++.++|+|+++|.|.++.++++|++|.+++.. +.+. .+.+..+||++.|++||++||||||+|||||
T Consensus 7 ~hw~r~~f~~rGSVl~~i~~rll~~~~fS~~v~~~~~w----~~~~---~i~~~~tpf~i~giaLai~L~FRnNaaYdR~ 79 (306)
T COG3781 7 QHWLRLIFVWRGSVLPKILPRLLLCFLFSLVVTAVLPW----YTPL---SIPFTLTPFSIPGIALAIFLGFRNNAAYDRY 79 (306)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh----hccc---cceeccCcchhHHHHHHHHHhhccchHHHHH
Confidence 56899999999999999999999999999999988762 1221 2445668999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhhcCCHHHHHHHhcCCCh
Q 021473 181 VDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHR 260 (312)
Q Consensus 181 WEARKlWG~IVn~SRnLaR~~~~~i~~~~d~~~~~~l~r~~iAF~~ALK~hLR~~~d~~~eL~~lL~~eele~l~~~~n~ 260 (312)
|||||+||++||.+||++|++++.++++-|.+++++++++++||++|+|.|||++ +..+|+..+|+.+.++.++...|+
T Consensus 80 wEaRKlWG~lvn~~Rnl~R~i~t~v~e~~d~a~~~~~l~llvAFahalr~~LR~q-p~~~~l~a~l~~~~~~kv~a~~np 158 (306)
T COG3781 80 WEARKLWGQLVNAIRNLARQIWTLVPETLDSADVREFLRLLVAFAHALRLQLRKQ-PQNEDLAALLPTSDYEKVLASNNP 158 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHhCC-CchHHHHHhcCHHHHHHHHhccCC
Confidence 9999999999999999999999999877788999999999999999999999975 678999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----cCChHHHHHHhcccccccce
Q 021473 261 PRCIIEFISQSLQLL----NLEATKQNMSQRSPVFTKAL 295 (312)
Q Consensus 261 P~~il~~ls~~L~~l----~Ld~~~~~~Ld~~l~~~~~~ 295 (312)
|+.++..||+.+++. ++|+++...||++++++++.
T Consensus 159 p~ei~~wmGe~l~~q~r~g~l~~~~~~sl~~~L~~~s~v 197 (306)
T COG3781 159 PLEIALWMGEWLQQQRRNGQLDAIQFTSLDRRLNSISAV 197 (306)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 999999999999875 79999999999999998763
No 2
>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.
Probab=100.00 E-value=5.8e-36 Score=280.40 Aligned_cols=190 Identities=26% Similarity=0.363 Sum_probs=163.0
Q ss_pred HHhhhccchhHHHHHHhhchhhHhhhHHHHHHHHHHHHHHHHHhcccccccCCCcccccccCCchhhhHHHHHHHHHHhc
Q 021473 93 WVEHRSSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFR 172 (312)
Q Consensus 93 W~~HRs~~R~~~~ll~~~~ssVi~~i~~~vl~~~~~A~~V~~~~~~~~~~~~~~~~p~l~~~~~p~sLlG~ALsLLLvFR 172 (312)
+..||++ +.|.++++.++|+|+++++++++++++++++|++++.... ...+..+..+++++|++|||+||||
T Consensus 6 ~~~~~~~-~~~~~~l~~~~gsv~~~i~~~ll~~~~~~~~v~~~~~~~~-------~~~~~~~~~~~~l~g~~l~~lL~Fr 77 (293)
T PF01062_consen 6 NQDVRTS-RSWWRLLFRWRGSVLKRIWPPLLVFLALAAAVALLYIFEP-------ICWLSLPSSPFSLLGIALSFLLVFR 77 (293)
T ss_pred ccccCCc-ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------cccccccccchhHHHHHHHHHHHHH
Confidence 3457777 6677888899999999999999999999999999874221 1135567789999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhcccCCCCCchhhhhcC---CHH
Q 021473 173 TEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVICDSDVSGDLQDLL---DAD 249 (312)
Q Consensus 173 tNtAYdRwWEARKlWG~IVn~SRnLaR~~~~~i~~~~d~~~~~~l~r~~iAF~~ALK~hLR~~~d~~~eL~~lL---~~e 249 (312)
||+||+|||||||+||+|+|.+||+++++.+++++ +..+++++++++||++++|+|||++++ .+++++++ .++
T Consensus 78 ~n~ay~Rwwe~r~~wg~l~~~~r~l~~~~~~~~~~---~~~~~~l~r~~ia~~~~~~~~lR~~~~-~~~~~~ll~~g~~~ 153 (293)
T PF01062_consen 78 TNTAYDRWWEARKLWGNLVNWSRNLARQICAFVPD---DDERRRLLRRLIAFAVALKAHLRGEST-SEELEDLLEAGLTE 153 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHHHHHHHhcCCCh-hhhhhhhhhccchH
Confidence 99999999999999999999999999999999963 223889999999999999999998653 44577776 666
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhcc----cCChHHHHHHhcccccccc
Q 021473 250 DLAIVLDSKHRPRCIIEFISQSLQLL----NLEATKQNMSQRSPVFTKA 294 (312)
Q Consensus 250 ele~l~~~~n~P~~il~~ls~~L~~l----~Ld~~~~~~Ld~~l~~~~~ 294 (312)
|.+.+.++.|+|+.++..+++.++++ .+|+..+.+|+++++.+..
T Consensus 154 ~~~~l~~~~~~p~~i~~~~~~~l~~~~~~g~~~~~~~~~l~~~l~~l~~ 202 (293)
T PF01062_consen 154 EERRLESADNPPNWILIQWSQRLREARREGLIDSFQLAQLDNELNALRD 202 (293)
T ss_pred HHHHHHhhcCcHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence 66688889999999999999999876 4999999999999988764
No 3
>KOG3547 consensus Bestrophin (Best vitelliform macular dystrophy-associated protein) [General function prediction only]
Probab=95.92 E-value=0.061 Score=54.75 Aligned_cols=189 Identities=11% Similarity=0.086 Sum_probs=108.1
Q ss_pred ccchhHHHHHHhhchhhHhhhHHHHHHHHHHHHHHHHHhccc-ccccCCCcccccccCCchhhhHHHHHHHHHHhccchh
Q 021473 98 SSLRHVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSAL-DSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEAS 176 (312)
Q Consensus 98 s~~R~~~~ll~~~~ssVi~~i~~~vl~~~~~A~~V~~~~~~~-~~~~~~~~~p~l~~~~~p~sLlG~ALsLLLvFRtNtA 176 (312)
+....+..+++.|||+|.+.|+..+++..+.=.+|.+++.+. .... ...+..+..----. .--+-|.++|||=.+.-
T Consensus 12 ~~~~~f~kll~rWkGSiwKai~~el~~~l~~Y~~i~~iYR~~l~~~q-q~~Fe~~~~~~d~~-~~~iPLtFmLGFfVt~V 89 (450)
T KOG3547|consen 12 SYSFTFLKLLLRWKGSIWKAIWKELLIWLILYYIISVIYRFALTESQ-QETFEKFVMYCDSR-LDFIPLTFMLGFFVTIV 89 (450)
T ss_pred hccHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhcc-cccccchHhhhhhHHHH
Confidence 444557788999999999999999887766655665555432 1000 00000000000000 01125677888888889
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--hHHHHHHHHHHH-HHHH-----HHHhcccCCCCCchhh-hhcCC
Q 021473 177 YSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTD--ECIKDSLLRYIM-AFPV-----ALKGHVICDSDVSGDL-QDLLD 247 (312)
Q Consensus 177 YdRwWEARKlWG~IVn~SRnLaR~~~~~i~~~~d--~~~~~~l~r~~i-AF~~-----ALK~hLR~~~d~~~eL-~~lL~ 247 (312)
.+|||+-=..-| -.+|++..+.+++++.++ ...|+.++|+++ +-+- ++|-.-|-. ...... .++|.
T Consensus 90 v~RW~~~f~nig----~id~~a~~vs~~i~g~d~~~r~~RRtIiRY~vLsqvLv~RdIS~~VrkRFP-t~d~lv~AG~mt 164 (450)
T KOG3547|consen 90 VDRWWKQFRNIG----WIDNLALLVSAYIPGTDERARLIRRTIIRYLVLSQVLVFRDISMKVRKRFP-TLDHLVEAGLMT 164 (450)
T ss_pred HHHHHHHHhccC----chHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHhcCCc
Confidence 999998765544 456777788888864221 133555665543 1111 234444432 222222 68999
Q ss_pred HHHHHHHhc---CCC-----hHHHHHHHHHHHHhcccC-ChHHHHHHhccccccc
Q 021473 248 ADDLAIVLD---SKH-----RPRCIIEFISQSLQLLNL-EATKQNMSQRSPVFTK 293 (312)
Q Consensus 248 ~eele~l~~---~~n-----~P~~il~~ls~~L~~l~L-d~~~~~~Ld~~l~~~~ 293 (312)
++|++.+.+ ..| +=+.+.+.+.+.-++..| ++.....+-+.+++|.
T Consensus 165 ~~E~~~~~~~~~~~~~kyw~Pi~Wa~sl~~~a~~~g~i~~d~~~~~~~~ei~~fR 219 (450)
T KOG3547|consen 165 EEELDILENIVDSKYMKYWVPINWAFSLLRKARKEGRIESDYLYNSLLGEIKKFR 219 (450)
T ss_pred HHHHHHHHhcccccccceeecHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHH
Confidence 999998843 334 235777777777777776 3445556655555543
No 4
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=91.97 E-value=2.2 Score=38.31 Aligned_cols=68 Identities=19% Similarity=0.315 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHH
Q 021473 158 YQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALK 229 (312)
Q Consensus 158 ~sLlG~ALsLLLvFRtNtAYdRwWEARKlWG~IVn~SRnLaR~~~~~i~~~~d~~~~~~l~r~~iAF~~ALK 229 (312)
++++|+..|++|+|=-+.+|+|+-++++.=-.=.+..+++.|.+..+.++| .++++-..+.+|..++-
T Consensus 2 ~~~vg~l~al~laf~~~~~~~~~~~a~~~v~~EA~al~~l~~~~~~lp~~~----~~~~~r~~l~~Y~~~vv 69 (209)
T PF14023_consen 2 FGVVGVLFALLLAFTISSAWSRYDNARQAVNQEANALGTLYRLLASLPEPP----DRDEIRALLRAYTRAVV 69 (209)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc----hhHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999988874122 24445555555655543
No 5
>PLN02673 quinolinate synthetase A
Probab=38.36 E-value=52 Score=35.67 Aligned_cols=51 Identities=25% Similarity=0.390 Sum_probs=35.4
Q ss_pred CccccccCCCCCCCCCccccccccc--CCCCCC-----chHHHHHHHhhCCCchhhhh
Q 021473 27 SITTLTFPSKSPNPLTFKTLSCLES--QSQSET-----KTLTLISVLRAIPDWADRVK 77 (312)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~d~~~ 77 (312)
++..++||.-+|++-...|.+|.+. +|+..+ .-+.++..++..++|.|.|+
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~e~lP~kl~eIveeF~~l~dWEeRYr 103 (724)
T PLN02673 46 SFKCIQSPPPDSAPSNASPFSCSAVAFSPSQTTELVPCKLQRLIKEFKSLTEPVDRVK 103 (724)
T ss_pred eeeeecCCCCCCCCCCCCccceeeeecCCCcccccCCHHHHHHHHHHHhCCCHHHHHH
Confidence 4567888887887767778755432 222222 44678889999999999886
No 6
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=37.73 E-value=1.2e+02 Score=24.36 Aligned_cols=65 Identities=14% Similarity=-0.050 Sum_probs=39.6
Q ss_pred HHHHHHhhchhhHhhhHHHHHHHHHHHHHHHHHhcccccccCCCcccccccCCchhhhHHHHHHHHHHhccchhhhh
Q 021473 103 VRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSR 179 (312)
Q Consensus 103 ~~~ll~~~~ssVi~~i~~~vl~~~~~A~~V~~~~~~~~~~~~~~~~p~l~~~~~p~sLlG~ALsLLLvFRtNtAYdR 179 (312)
|..+++.+==-..++++...+++.++.+++.++...++ .+......++.+++++.+++-|.-|-|
T Consensus 40 w~Af~f~~~w~l~r~mw~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~l~l~~~~~~g~~~n~~y~~ 104 (108)
T PF10947_consen 40 WWAFFFGPLWLLYRKMWLYAIIFLALLVALAIILILLG------------FPPGLGLGLSLAISLFFGMFANYWYYR 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54555444344457777777666666666655554221 111222368888899999999888765
No 7
>cd08816 CARD_RIG-I_1 Caspase activation and recruitment domain found in RIG-I, first repeat. Caspase activation and recruitment domain (CARD) found in RIG-I (Retinoic acid Inducible Gene I, also known as Ddx58), first repeat. RIG-I is a cytoplasmic RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. RIG-I contains two N-terminal CARD domains and a C-terminal RNA helicase. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, RIG-I recognizes different sets of viruses compared to MDA5, a related RNA helicase. RIG-I associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction doma
Probab=37.24 E-value=83 Score=25.38 Aligned_cols=67 Identities=12% Similarity=0.103 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcccCCCCCchhhhhcCCHHHHHHHhcCC-ChHHHHHHHHHHHHhcccCChHHHHHHhc
Q 021473 220 YIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSK-HRPRCIIEFISQSLQLLNLEATKQNMSQR 287 (312)
Q Consensus 220 ~~iAF~~ALK~hLR~~~d~~~eL~~lL~~eele~l~~~~-n~P~~il~~ls~~L~~l~Ld~~~~~~Ld~ 287 (312)
.+-||.--+|.-|+.. .+..-+..++++|+++.+.... ..|...++..=..+..+.=..+-+..||.
T Consensus 7 nL~af~~yi~ktl~P~-yIl~~m~~~~~~e~v~~I~aEe~kg~~~AaqlfL~~l~~lee~GWFqafLDa 74 (89)
T cd08816 7 NLQRFRDYIKKILRPS-YILGFMTTWLEDEEVERILSEEEKGVTSAAQLFLDYVLKLEEEGWFQAFLDA 74 (89)
T ss_pred HHHHHHHHHHHhhchH-HHHHHHHHhcCHHHHHHHHHHhccChHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 4558888899999853 3566788999999999987655 45677777766677777666677776664
No 8
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=34.35 E-value=46 Score=30.70 Aligned_cols=96 Identities=20% Similarity=0.091 Sum_probs=57.0
Q ss_pred cccccCCCCCCCCCcccccccccCCCCCCchHHHHHHHhhCCCchhhhhhhhc-------cccCCCCChhHHHhhhccch
Q 021473 29 TTLTFPSKSPNPLTFKTLSCLESQSQSETKTLTLISVLRAIPDWADRVKERGV-------KQKRTLYSHEKWVEHRSSLR 101 (312)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~E~~~-------~~rr~~y~~~~W~~HRs~~R 101 (312)
++..+.-++| +.+|++++-=--++-| +...+++|++. .|.+.+++- ...+.+-.+.+|..|+...-
T Consensus 25 ~~~~~~k~~P---k~~s~~~lVvlGSGGH-T~EMlrLl~~l---~~~y~~r~yI~a~tD~mS~~k~~~F~~~~a~~~a~~ 97 (211)
T KOG3339|consen 25 HTQRSTKKDP---KDKSLSTLVVLGSGGH-TGEMLRLLEAL---QDLYSPRSYIAADTDEMSEQKARSFELSLAHCKAKN 97 (211)
T ss_pred HHHhccCCCC---cCCcceEEEEEcCCCc-HHHHHHHHHHH---HhhcCceEEEEecCchhhHHHHHhhhccccccchhh
Confidence 3445554443 5577744433333445 56788888877 555554311 01111223677887766544
Q ss_pred hHHHHHHhhchhhHhhhHHHHHHHHHHHHHHHHHh
Q 021473 102 HVRHLLSSLSSRVILSLIPPVIAFTMVAVVIASYN 136 (312)
Q Consensus 102 ~~~~ll~~~~ssVi~~i~~~vl~~~~~A~~V~~~~ 136 (312)
+- ++|++=+.+-+..-++.+++|.+-+++.
T Consensus 98 ~~-----ipRsReVgQS~ltSv~Tti~all~s~~l 127 (211)
T KOG3339|consen 98 YE-----IPRSREVGQSWLTSVFTTIWALLQSFVL 127 (211)
T ss_pred ee-----cchhhhhhhhhhhhHHHHHHHHHHHheE
Confidence 33 7899999888888878888877766643
No 9
>PF13096 CENP-P: CENP-A-nucleosome distal (CAD) centromere subunit, CENP-P
Probab=28.83 E-value=34 Score=30.89 Aligned_cols=20 Identities=35% Similarity=0.683 Sum_probs=18.9
Q ss_pred HHHHHhccchhhhhhHHHHH
Q 021473 166 ALLLVFRTEASYSRFVDGKK 185 (312)
Q Consensus 166 sLLLvFRtNtAYdRwWEARK 185 (312)
.+++-||+=..|.+|.|-||
T Consensus 60 ~L~lFFrsl~~~aew~e~R~ 79 (177)
T PF13096_consen 60 DLLLFFRSLHSFAEWCEHRK 79 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999998
No 10
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=27.50 E-value=79 Score=23.87 Aligned_cols=64 Identities=13% Similarity=0.219 Sum_probs=36.5
Q ss_pred chhhHhhhHHHHHHHHHHHHHHHHHhcccccccCCCcccccccCCchhhhHHHHHHHHHHhccchhhhhhHHHHHHH
Q 021473 111 SSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAW 187 (312)
Q Consensus 111 ~ssVi~~i~~~vl~~~~~A~~V~~~~~~~~~~~~~~~~p~l~~~~~p~sLlG~ALsLLLvFRtNtAYdRwWEARKlW 187 (312)
+-|++..+.-.+..+.+..-+++++-.. +. .......+.-.++++.--|==|..||+|.. |+-|
T Consensus 4 ~~Ri~hai~FE~~~l~~~~P~~a~~~~~---~~---------~~a~~l~v~~s~~a~~wn~ifN~~FD~~~~-r~~~ 67 (67)
T PF05232_consen 4 KRRILHAILFEVGALLISVPLIAWWLGI---SL---------WQAGALDVGLSLFAMVWNYIFNWLFDKIEP-RQRW 67 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC---CH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccC
Confidence 3455556666777777766666654431 00 011233444445555556667999999876 6544
No 11
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=27.07 E-value=1.1e+02 Score=26.99 Aligned_cols=64 Identities=23% Similarity=0.245 Sum_probs=37.1
Q ss_pred HhhchhhHhhhHHHHHHHHHHHHHHHHHhcccccccCCCcccccccCCchhhhHHHHHHHHHHhccchhhhhhHHHHHHH
Q 021473 108 SSLSSRVILSLIPPVIAFTMVAVVIASYNSALDSHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAW 187 (312)
Q Consensus 108 ~~~~ssVi~~i~~~vl~~~~~A~~V~~~~~~~~~~~~~~~~p~l~~~~~p~sLlG~ALsLLLvFRtNtAYdRwWEARKlW 187 (312)
..+++..+-.+.|.+.++..... ...+.. ...-.+...++|+++|+++++| |+|--+.|..|
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~L-a~~L~~-------------~e~~~~~~~~lg~~l~fl~~r~----ysRkl~~~~~~ 134 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAIL-AQYLFF-------------SELIVIFGAFLGLALGFLLARR----YSRKLAKRTEW 134 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHHhh-------------hhHHHHHHHHHHHHHHHHHHHH----HHHHhhhcccC
Confidence 34567777777766655443332 222111 0011234456888888888876 88888888776
Q ss_pred HH
Q 021473 188 TQ 189 (312)
Q Consensus 188 G~ 189 (312)
--
T Consensus 135 Qp 136 (150)
T COG3086 135 QP 136 (150)
T ss_pred CC
Confidence 43
No 12
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=25.22 E-value=4.5e+02 Score=22.75 Aligned_cols=108 Identities=13% Similarity=0.194 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHhccchhhhhhHHHHHH---------HHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHH
Q 021473 158 YQLTAPALALLLVFRTEASYSRFVDGKKA---------WTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVAL 228 (312)
Q Consensus 158 ~sLlG~ALsLLLvFRtNtAYdRwWEARKl---------WG~IVn~SRnLaR~~~~~i~~~~d~~~~~~l~r~~iAF~~AL 228 (312)
..+..-..+++ +.+.+|+|| +|-.+ |-.+.+++-.|.+++...+..+++...++ ..+.-..-+
T Consensus 24 ~~l~~ri~~LL---~s~~~~~rw-~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~----~ai~~L~~l 95 (165)
T PF08167_consen 24 HKLVTRINSLL---QSKSAYSRW-AGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLE----AAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHh---CCCChhhHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHH----HHHHHHHHH
Confidence 34455555655 777899997 77765 44455566667777777776544433332 222223334
Q ss_pred HhcccCCCCC-chhhhhcCCHHHHHHH---hcCCChHHHHHHHHHHHHhc
Q 021473 229 KGHVICDSDV-SGDLQDLLDADDLAIV---LDSKHRPRCIIEFISQSLQL 274 (312)
Q Consensus 229 K~hLR~~~d~-~~eL~~lL~~eele~l---~~~~n~P~~il~~ls~~L~~ 274 (312)
-...++..+. +|...+.|+. -++.+ .+....|..++..+...+..
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~-~i~~ll~l~~~~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPK-FIQSLLQLLQDSSCPETALDALATLLPH 144 (165)
T ss_pred HHHhcCCCchHHHHhhccHHH-HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4566665443 2222222221 12222 12235666677777766654
No 13
>PTZ00095 40S ribosomal protein S19; Provisional
Probab=22.91 E-value=50 Score=29.71 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=24.5
Q ss_pred hHHHHHHHh-----hCCCchhhhhhhhccccCCCCChhHHHhh
Q 021473 59 TLTLISVLR-----AIPDWADRVKERGVKQKRTLYSHEKWVEH 96 (312)
Q Consensus 59 ~~~~~~~~~-----~~~~~~d~~~E~~~~~rr~~y~~~~W~~H 96 (312)
.+++..-|+ .+|+|+|-+|= +...-+..||. ||..-
T Consensus 37 I~~~A~~LK~~gki~~P~W~d~vKT-g~~KElaP~d~-DW~Yi 77 (169)
T PTZ00095 37 IKAFAQHFKLEGKIFVPKCTEIVKT-SHGRELAPQNP-DWYYI 77 (169)
T ss_pred HHHHHHHHHHcCCCCCCcchhhhcc-cccccCCCCCc-cHHHH
Confidence 344455554 36999999996 56666668884 68744
No 14
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=22.64 E-value=86 Score=19.80 Aligned_cols=20 Identities=30% Similarity=0.192 Sum_probs=16.1
Q ss_pred CCchhhhHHHHHHHHHHhcc
Q 021473 154 SSLPYQLTAPALALLLVFRT 173 (312)
Q Consensus 154 ~~~p~sLlG~ALsLLLvFRt 173 (312)
++.-+.++|+++..++++|-
T Consensus 4 sGST~~Ll~~~l~~l~~~rR 23 (26)
T TIGR03778 4 SGSTLALLGLGLLGLLGLRR 23 (26)
T ss_pred chhHHHHHHHHHHHHHHHhh
Confidence 34567889999999999874
No 15
>COG5488 Integral membrane protein [Function unknown]
Probab=22.43 E-value=1.5e+02 Score=26.42 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=12.9
Q ss_pred hhhhhcCCHHHHHHHhc
Q 021473 240 GDLQDLLDADDLAIVLD 256 (312)
Q Consensus 240 ~eL~~lL~~eele~l~~ 256 (312)
-++...|.|++.+.+..
T Consensus 137 ~~ig~fL~Pd~Re~fa~ 153 (164)
T COG5488 137 VDIGRFLNPDDRESFAA 153 (164)
T ss_pred eehhcccChHHHHHHHH
Confidence 36788899998887653
No 16
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=20.71 E-value=59 Score=28.69 Aligned_cols=33 Identities=33% Similarity=0.616 Sum_probs=23.1
Q ss_pred HHHHHHHh-----hCCCchhhhhhhhccccCCCCChhHHH
Q 021473 60 LTLISVLR-----AIPDWADRVKERGVKQKRTLYSHEKWV 94 (312)
Q Consensus 60 ~~~~~~~~-----~~~~~~d~~~E~~~~~rr~~y~~~~W~ 94 (312)
+++..-|+ .+|+|+|-+|= +...-+..+|.| |.
T Consensus 14 ~~~A~~LK~~~ki~~P~W~~~vKT-g~~kE~~P~~~D-W~ 51 (150)
T PRK09333 14 ERLAEYLKNVDEIKPPEWAAFVKT-GVHKERPPEQED-WW 51 (150)
T ss_pred HHHHHHHHhcCCcCCCcchhhhcc-cccccCCCCCCc-hH
Confidence 34444454 47999999996 566666788855 76
Done!