Query 021473
Match_columns 312
No_of_seqs 179 out of 655
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 04:39:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021473.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021473hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2v7fa1 a.4.5.84 (A:2-150) Rib 14.5 13 0.00097 29.4 -0.7 27 68-96 26-52 (149)
2 d2axth1 f.23.33.1 (H:2-65) Pho 11.8 50 0.0037 22.2 1.8 14 158-171 27-40 (64)
3 d1kqfb2 f.23.22.1 (B:246-290) 10.3 97 0.0071 19.4 2.8 27 115-141 8-34 (45)
4 d2ifxa1 d.58.4.19 (A:1-108) Hy 9.8 42 0.0031 24.2 0.9 19 170-188 68-88 (108)
5 d1qr0a1 d.150.1.1 (A:1-101) 4' 9.4 1.7E+02 0.012 20.2 4.3 35 240-274 18-52 (101)
6 d1q90m_ f.23.25.1 (M:) PetM su 8.8 80 0.0058 18.3 1.7 14 157-170 14-27 (34)
7 d2ouwa1 a.152.1.4 (A:1-134) Hy 7.1 3.6E+02 0.026 19.0 5.5 31 255-285 77-107 (134)
8 d1cola_ f.1.1.1 (A:) Colicin A 6.9 2.3E+02 0.017 22.8 4.4 12 152-163 162-173 (197)
9 d1ni7a_ d.224.1.1 (A:) Hypothe 6.3 1.7E+02 0.012 22.2 3.2 30 48-77 6-35 (149)
10 d1a4ma_ c.1.9.1 (A:) Adenosine 5.8 1.9E+02 0.014 24.0 3.7 48 170-220 296-343 (349)
No 1
>d2v7fa1 a.4.5.84 (A:2-150) Ribosomal protein S19e {Pyrococcus abyssi [TaxId: 29292]}
Probab=14.50 E-value=13 Score=29.41 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=15.8
Q ss_pred hCCCchhhhhhhhccccCCCCChhHHHhh
Q 021473 68 AIPDWADRVKERGVKQKRTLYSHEKWVEH 96 (312)
Q Consensus 68 ~~~~~~d~~~E~~~~~rr~~y~~~~W~~H 96 (312)
.+|+|+|-+|=. ...-+..+| +||..-
T Consensus 26 ~~P~W~~~vKTg-~~kE~~P~~-~DW~y~ 52 (149)
T d2v7fa1 26 KPPEWAPFVKTG-RHKERLPEQ-EDWWYY 52 (149)
T ss_dssp CCCSCGGGCCC-------CHHH-HTHHHH
T ss_pred CCCcchhhhccc-ccccCCCCC-CchHHH
Confidence 379999999975 555566776 667633
No 2
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.77 E-value=50 Score=22.22 Aligned_cols=14 Identities=43% Similarity=0.555 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHh
Q 021473 158 YQLTAPALALLLVF 171 (312)
Q Consensus 158 ~sLlG~ALsLLLvF 171 (312)
-.++|+++++|+||
T Consensus 27 TplMgv~m~Lf~vf 40 (64)
T d2axth1 27 TPLMAVFMGLFLVF 40 (64)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 34699999999998
No 3
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=10.27 E-value=97 Score=19.37 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=21.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHhccccc
Q 021473 115 ILSLIPPVIAFTMVAVVIASYNSALDS 141 (312)
Q Consensus 115 i~~i~~~vl~~~~~A~~V~~~~~~~~~ 141 (312)
.+.+++|+..+++.+++++.+.+++..
T Consensus 8 WKgv~Kpl~~~~~~~~~~~~~fHYv~v 34 (45)
T d1kqfb2 8 WKGALKPLAAAGFIATFAGLIFHYIGI 34 (45)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhee
Confidence 456888999999999988877776543
No 4
>d2ifxa1 d.58.4.19 (A:1-108) Hypothetical protein Reut_A1503 {Ralstonia eutropha [TaxId: 106590]}
Probab=9.83 E-value=42 Score=24.22 Aligned_cols=19 Identities=32% Similarity=0.775 Sum_probs=15.7
Q ss_pred HhccchhhhhhHH--HHHHHH
Q 021473 170 VFRTEASYSRFVD--GKKAWT 188 (312)
Q Consensus 170 vFRtNtAYdRwWE--ARKlWG 188 (312)
-|.+.+.|++|-| -||+|=
T Consensus 68 wf~~e~~y~~ym~sdirkawf 88 (108)
T d2ifxa1 68 WFKDDAAYATYMASDIRKAWF 88 (108)
T ss_dssp EESSHHHHHHHHHCHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHH
Confidence 3889999999986 588883
No 5
>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]}
Probab=9.37 E-value=1.7e+02 Score=20.17 Aligned_cols=35 Identities=6% Similarity=0.060 Sum_probs=29.1
Q ss_pred hhhhhcCCHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 021473 240 GDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQL 274 (312)
Q Consensus 240 ~eL~~lL~~eele~l~~~~n~P~~il~~ls~~L~~ 274 (312)
+.+..+|+++|.+++.+-.+........+++.|-+
T Consensus 18 ~~~~~~Ls~~e~~r~~r~~~~~dr~~~l~~r~llr 52 (101)
T d1qr0a1 18 ERFMTFISPEKREKCRRFYHKEDAHRTLLGDVLVR 52 (101)
T ss_dssp HHHHTTSCHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 45778999999999999999988888888777654
No 6
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.81 E-value=80 Score=18.28 Aligned_cols=14 Identities=21% Similarity=0.375 Sum_probs=10.1
Q ss_pred hhhhHHHHHHHHHH
Q 021473 157 PYQLTAPALALLLV 170 (312)
Q Consensus 157 p~sLlG~ALsLLLv 170 (312)
..+++|.|+||.|.
T Consensus 14 g~tl~glaigfvll 27 (34)
T d1q90m_ 14 GMTLVGLAIGFVLL 27 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhe
Confidence 45678888888764
No 7
>d2ouwa1 a.152.1.4 (A:1-134) Hypothetical protein Rru_A0301 {Rhodospirillum rubrum [TaxId: 1085]}
Probab=7.11 E-value=3.6e+02 Score=18.97 Aligned_cols=31 Identities=0% Similarity=-0.031 Sum_probs=21.6
Q ss_pred hcCCChHHHHHHHHHHHHhcccCChHHHHHH
Q 021473 255 LDSKHRPRCIIEFISQSLQLLNLEATKQNMS 285 (312)
Q Consensus 255 ~~~~n~P~~il~~ls~~L~~l~Ld~~~~~~L 285 (312)
....|...||........++.++++.+..++
T Consensus 77 vS~~n~C~YC~~~H~~~a~~~G~s~e~I~e~ 107 (134)
T d2ouwa1 77 VSTANSCSYCAHSHTAAARAKGMTPAQHAEV 107 (134)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3455777888888888777777777665443
No 8
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=6.95 E-value=2.3e+02 Score=22.79 Aligned_cols=12 Identities=0% Similarity=0.083 Sum_probs=7.4
Q ss_pred ccCCchhhhHHH
Q 021473 152 RASSLPYQLTAP 163 (312)
Q Consensus 152 ~~~~~p~sLlG~ 163 (312)
..|.+|.+++|+
T Consensus 162 g~~~~~iGI~g~ 173 (197)
T d1cola_ 162 GVPAIAVGIAGI 173 (197)
T ss_dssp CSCHHHHHHHHH
T ss_pred cccccHHHHHHH
Confidence 445566777766
No 9
>d1ni7a_ d.224.1.1 (A:) Hypothetical protein YgdK {Escherichia coli [TaxId: 562]}
Probab=6.31 E-value=1.7e+02 Score=22.20 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=22.1
Q ss_pred ccccCCCCCCchHHHHHHHhhCCCchhhhh
Q 021473 48 CLESQSQSETKTLTLISVLRAIPDWADRVK 77 (312)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 77 (312)
+++++-+++.+.+.+++.+....+|-|.|.
T Consensus 6 ~~~~p~g~~~~~~~i~e~f~~~~dweery~ 35 (149)
T d1ni7a_ 6 FAGHPFGTTVTAETLRNTFAPLTQWEDKYR 35 (149)
T ss_dssp CCCCCTTSSSCHHHHHHHHTTCCSHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHhCCCHHHHHH
Confidence 344444455468899999999999988764
No 10
>d1a4ma_ c.1.9.1 (A:) Adenosine deaminase (ADA) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.83 E-value=1.9e+02 Score=24.04 Aligned_cols=48 Identities=15% Similarity=0.055 Sum_probs=35.9
Q ss_pred HhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 021473 170 VFRTEASYSRFVDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRY 220 (312)
Q Consensus 170 vFRtNtAYdRwWEARKlWG~IVn~SRnLaR~~~~~i~~~~d~~~~~~l~r~ 220 (312)
+|+|+-+++ |+-+.+.||-=....+.++|....+.-- ++++|+++++.
T Consensus 296 ~f~t~Ls~E-y~~a~~~~~l~~~~l~~l~~nsi~~sf~--~~~~K~~l~~~ 343 (349)
T d1a4ma_ 296 IFKSTLDTD-YQMTKKDMGFTEEEFKRLNINAAKSSFL--PEEEKKELLER 343 (349)
T ss_dssp TTTCCHHHH-HHHHHHTTTCCHHHHHHHHHHHHHTSSC--CHHHHHHHHHH
T ss_pred ccCCCHHHH-HHHHHHHhCcCHHHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 588888877 8999999997777888888887776542 35566666553
Done!