Citrus Sinensis ID: 021475

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
MVVPVFRASVASFHPLFDSLCTRLSTNSSLPKNSRLLPFASSELNPVQSRPELSFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAAKALANLACSHSTDSNFDSPYTMEARAKGFDVPMWKKILGMKLKGGKLDDITVIVSQVVNSHDVSIS
cccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccccccEEEEEEcccEEEEEEcccEEcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccEEEEEEEEccEEEEEEEcccccEEEEccEEEEEcccccccccccccccccccccccccEEEEEEEcccccEEEEEcccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccHHHHHccccccccccccEEEEEEEEEEccccccc
ccHHHHHHHHHccccccHHcccccccccccccccccccccccccccccccccEEEEEccEEcccccccccccccEEEEEcccccEEEEEcccccHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccEEEEEEEccccEEEEEEEccccEEEEEccEEEEEccccEccccccEEcccccccccHcHccEEEEEcccccEEEEEcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccHHHcccccccccccccEEEEEEEEEEccccccc
MVVPVFRasvasfhplfdslctrlstnsslpknsrllpfasselnpvqsrpelsfcvgthliphpnkverggedafFVSCYNGGVIAVADgvsgwaeqnvdpslfsRELMANASYFvedvevnydpqilmrkahaatssVGSATVIVAMLERNGILKVASVGDCGLRIIRkgqitfssspqehyfdcpyqlsseAVGQTYLDAMVTTVELIegdtivmgsdglfdnvfdHEVVSMTTRFIDVSEAAKALANLAcshstdsnfdspytmearakgfdvpmWKKILGmklkggklddITVIVSQVVnshdvsis
MVVPVFRASVASFHPLFDSLCTRLSTNSSLPKNSRLLPFASSELNPVQSRPELSFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAAKALANLACShstdsnfdspYTMEARAKGFDVPMWKKILGMKLKGGKLDDITVIVSQvvnshdvsis
MVVPVFRASVASFHPLFDSLCTRLSTNSSLPKNSRLLPFASSELNPVQSRPELSFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAAKALANLACSHSTDSNFDSPYTMEARAKGFDVPMWkkilgmklkggklDDITVIVSQVVNSHDVSIS
****VFRASVASFHPLFDSLCTRL****************************LSFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAAKALANLACSHST***FDSPYTMEARAKGFDVPMWKKILGMKLKGGKLDDITVIVSQVVN*******
*****************************************************SFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAAKALANLACSHSTDSNFDSPYTMEARAKGFDVPMWKKILGMKLKGGKLDDITVIVSQV**S******
MVVPVFRASVASFHPLFDSLCTRLSTNSSLPKNSRLLPFASSELNPVQSRPELSFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAAKALANLACSHSTDSNFDSPYTMEARAKGFDVPMWKKILGMKLKGGKLDDITVIVSQVVNSHDVSIS
*VVPVFRASVASFHPL*********************************RPELSFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAAKALANLACSHSTDSNFDSPYTMEARAKGFDVPMWKKILGMKLKGGKLDDITVIVSQVVNSH*****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
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MVVPVFRASVASFHPLFDSLCTRLSTNSSLPKNSRLLPFASSELNPVQSRPELSFCVGTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAAKALANLACSHSTDSNFDSPYTMEARAKGFDVPMWKKILGMKLKGGKLDDITVIVSQVVNSHDVSIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query312 2.2.26 [Sep-21-2011]
O64730298 Probable protein phosphat yes no 0.945 0.989 0.634 1e-110
Q942P9331 Probable protein phosphat yes no 0.855 0.806 0.682 1e-102
Q9SUK9467 Probable protein phosphat no no 0.778 0.520 0.371 1e-40
Q9LVQ8414 Probable protein phosphat no no 0.762 0.574 0.368 2e-38
Q339D2465 Probable protein phosphat no no 0.858 0.576 0.330 7e-34
B4JYN1307 Protein phosphatase PTC7 N/A no 0.721 0.732 0.338 2e-29
Q6J2K6569 Probable protein phosphat N/A no 0.730 0.400 0.332 4e-28
Q10QL5569 Probable protein phosphat no no 0.730 0.400 0.332 4e-28
B4NBL6315 Protein phosphatase PTC7 N/A no 0.75 0.742 0.343 6e-28
Q93V88724 Probable protein phosphat no no 0.708 0.305 0.320 1e-26
>sp|O64730|P2C26_ARATH Probable protein phosphatase 2C 26 OS=Arabidopsis thaliana GN=At2g30170 PE=2 SV=2 Back     alignment and function desciption
 Score =  399 bits (1025), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/309 (63%), Positives = 238/309 (77%), Gaps = 14/309 (4%)

Query: 1   MVVPVFRASVASFHPLFDSLCTRLSTNSSLPKNSR---LLPFASSELNPVQSRPELSFCV 57
           M +PV R  V    P         S   S P  SR   L   A SE+ P+  RPELS  V
Sbjct: 1   MAIPVTRMMVPHAIP---------SLRLSHPNPSRVDFLCRCAPSEIQPL--RPELSLSV 49

Query: 58  GTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFV 117
           G H IPHP+KVE+GGEDAFFVS Y GGV+AVADGVSGWAEQ+VDPSLFS+ELMANAS  V
Sbjct: 50  GIHAIPHPDKVEKGGEDAFFVSSYRGGVMAVADGVSGWAEQDVDPSLFSKELMANASRLV 109

Query: 118 EDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFS 177
           +D EV YDP  L+ KAH AT+S GSAT+I+AMLE  GILK+ +VGDCGL+++R+GQI F+
Sbjct: 110 DDQEVRYDPGFLIDKAHTATTSRGSATIILAMLEEVGILKIGNVGDCGLKLLREGQIIFA 169

Query: 178 SSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTT 237
           ++PQEHYFDCPYQLSSE   QTYLDA  + VE+ +GD IVMGSDGLFDNVFDHE+VS+ T
Sbjct: 170 TAPQEHYFDCPYQLSSEGSAQTYLDASFSIVEVQKGDVIVMGSDGLFDNVFDHEIVSIVT 229

Query: 238 RFIDVSEAAKALANLACSHSTDSNFDSPYTMEARAKGFDVPMWKKILGMKLKGGKLDDIT 297
           +  DV+E+++ LA +A SHS D+ F+SPY +EARAKGFDVP+WKK+LG KL GGKLDD+T
Sbjct: 230 KHTDVAESSRLLAEVASSHSRDTEFESPYALEARAKGFDVPLWKKVLGKKLTGGKLDDVT 289

Query: 298 VIVSQVVNS 306
           VIV++VV+S
Sbjct: 290 VIVAKVVSS 298

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6
>sp|Q942P9|P2C01_ORYSJ Probable protein phosphatase 2C 1 OS=Oryza sativa subsp. japonica GN=Os01g0164600 PE=2 SV=1 Back     alignment and function description
>sp|Q9SUK9|P2C55_ARATH Probable protein phosphatase 2C 55 OS=Arabidopsis thaliana GN=At4g16580 PE=2 SV=2 Back     alignment and function description
>sp|Q9LVQ8|P2C80_ARATH Probable protein phosphatase 2C 80 OS=Arabidopsis thaliana GN=At5g66720 PE=2 SV=1 Back     alignment and function description
>sp|Q339D2|P2C71_ORYSJ Probable protein phosphatase 2C 71 OS=Oryza sativa subsp. japonica GN=Os10g0370000 PE=2 SV=1 Back     alignment and function description
>sp|B4JYN1|PTC71_DROGR Protein phosphatase PTC7 homolog fig OS=Drosophila grimshawi GN=fig PE=3 SV=1 Back     alignment and function description
>sp|Q6J2K6|BIP2C_ORYSI Probable protein phosphatase 2C BIPP2C1 OS=Oryza sativa subsp. indica GN=BIPP2C1 PE=2 SV=1 Back     alignment and function description
>sp|Q10QL5|BIP2C_ORYSJ Probable protein phosphatase 2C BIPP2C1 OS=Oryza sativa subsp. japonica GN=BIPP2C1 PE=2 SV=1 Back     alignment and function description
>sp|B4NBL6|PTC71_DROWI Protein phosphatase PTC7 homolog fig OS=Drosophila willistoni GN=fig PE=3 SV=1 Back     alignment and function description
>sp|Q93V88|P2C62_ARATH Probable protein phosphatase 2C 62 OS=Arabidopsis thaliana GN=At4g33500 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
255550609323 protein phosphatase 2c, putative [Ricinu 0.948 0.916 0.735 1e-123
356565976306 PREDICTED: probable protein phosphatase 0.974 0.993 0.711 1e-122
225434453311 PREDICTED: probable protein phosphatase 0.964 0.967 0.699 1e-119
224059873331 predicted protein [Populus trichocarpa] 0.990 0.933 0.723 1e-118
357458041309 hypothetical protein MTR_3g031360 [Medic 0.977 0.987 0.709 1e-115
449454999313 PREDICTED: probable protein phosphatase 0.971 0.968 0.665 1e-113
217074526309 unknown [Medicago truncatula] gi|3884943 0.977 0.987 0.7 1e-113
449514561313 PREDICTED: LOW QUALITY PROTEIN: probable 0.971 0.968 0.665 1e-113
18402284298 putative protein phosphatase 2C 26 [Arab 0.945 0.989 0.634 1e-108
297826411301 hypothetical protein ARALYDRAFT_481929 [ 0.955 0.990 0.627 1e-107
>gi|255550609|ref|XP_002516354.1| protein phosphatase 2c, putative [Ricinus communis] gi|223544520|gb|EEF46038.1| protein phosphatase 2c, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/299 (73%), Positives = 253/299 (84%), Gaps = 3/299 (1%)

Query: 9   SVASFHPLFDSLCTRLSTNSSLPKNSRLLPFA-SSELNPVQSRPELSFCVGTHLIPHPNK 67
           S++  +  F S    L   +S+PK ++ L FA SS+LNPV S  ++  CVGTHLIPHPNK
Sbjct: 4   SISRCNQFFHSSLPNLPYRNSIPKKNKWLCFATSSQLNPVGS--DVCVCVGTHLIPHPNK 61

Query: 68  VERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQ 127
           ++RGGEDAFFVS YNGGVIAVADGVSGWAEQ+VDPSLF RELMANAS  V D EVNYDPQ
Sbjct: 62  IDRGGEDAFFVSSYNGGVIAVADGVSGWAEQDVDPSLFPRELMANASCLVGDEEVNYDPQ 121

Query: 128 ILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDC 187
           IL+RKAHAATSS+GSATVIVAMLERNG+LK+A+VGDCGLR+IR G+I FS+S QEHYFDC
Sbjct: 122 ILIRKAHAATSSIGSATVIVAMLERNGMLKIANVGDCGLRVIRGGRIIFSTSTQEHYFDC 181

Query: 188 PYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAAK 247
           PYQLSSE VGQTYLDAMV++VEL+EGDTIVMGSDGLFDNVF  E+VS      DV+EAAK
Sbjct: 182 PYQLSSEIVGQTYLDAMVSSVELMEGDTIVMGSDGLFDNVFSEEIVSTIGTHNDVAEAAK 241

Query: 248 ALANLACSHSTDSNFDSPYTMEARAKGFDVPMWKKILGMKLKGGKLDDITVIVSQVVNS 306
           ALANLA  HS DS+F+SPY +EAR+KGFDVP+WKKILG+KL GGKLDDITVIV +VV S
Sbjct: 242 ALANLASMHSLDSDFESPYALEARSKGFDVPLWKKILGLKLTGGKLDDITVIVGRVVRS 300

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356565976|ref|XP_003551211.1| PREDICTED: probable protein phosphatase 2C 26-like [Glycine max] Back     alignment and taxonomy information
>gi|225434453|ref|XP_002273518.1| PREDICTED: probable protein phosphatase 2C 26 [Vitis vinifera] gi|297745823|emb|CBI15879.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224059873|ref|XP_002300005.1| predicted protein [Populus trichocarpa] gi|222847263|gb|EEE84810.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357458041|ref|XP_003599301.1| hypothetical protein MTR_3g031360 [Medicago truncatula] gi|355488349|gb|AES69552.1| hypothetical protein MTR_3g031360 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449454999|ref|XP_004145241.1| PREDICTED: probable protein phosphatase 2C 26-like [Cucumis sativus] gi|449471618|ref|XP_004153362.1| PREDICTED: probable protein phosphatase 2C 26-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|217074526|gb|ACJ85623.1| unknown [Medicago truncatula] gi|388494320|gb|AFK35226.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449514561|ref|XP_004164411.1| PREDICTED: LOW QUALITY PROTEIN: probable protein phosphatase 2C 26-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18402284|ref|NP_565696.1| putative protein phosphatase 2C 26 [Arabidopsis thaliana] gi|75099170|sp|O64730.2|P2C26_ARATH RecName: Full=Probable protein phosphatase 2C 26; Short=AtPP2C26 gi|13878071|gb|AAK44113.1|AF370298_1 unknown protein [Arabidopsis thaliana] gi|17104663|gb|AAL34220.1| unknown protein [Arabidopsis thaliana] gi|20197099|gb|AAC16955.2| expressed protein [Arabidopsis thaliana] gi|330253260|gb|AEC08354.1| putative protein phosphatase 2C 26 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297826411|ref|XP_002881088.1| hypothetical protein ARALYDRAFT_481929 [Arabidopsis lyrata subsp. lyrata] gi|297326927|gb|EFH57347.1| hypothetical protein ARALYDRAFT_481929 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query312
TAIR|locus:2060822298 PBCP "PHOTOSYSTEM II CORE PHOS 0.945 0.989 0.611 1.5e-92
TAIR|locus:2130834467 AT4G16580 [Arabidopsis thalian 0.903 0.603 0.337 1e-36
TAIR|locus:2173679414 AT5G66720 [Arabidopsis thalian 0.785 0.591 0.344 2.8e-34
DICTYBASE|DDB_G0280067516 DDB_G0280067 "protein phosphat 0.689 0.416 0.340 1.2e-33
WB|WBGene00012362330 W09D10.4 [Caenorhabditis elega 0.801 0.757 0.329 9.4e-27
UNIPROTKB|B4JYN1307 fig "Protein phosphatase PTC7 0.727 0.739 0.325 1.4e-25
UNIPROTKB|B4NBL6315 fig "Protein phosphatase PTC7 0.75 0.742 0.332 2.9e-25
TAIR|locus:2119246724 AT4G33500 [Arabidopsis thalian 0.785 0.338 0.311 5e-25
FB|FBgn0029949374 CG15035 [Drosophila melanogast 0.733 0.612 0.320 1.1e-23
UNIPROTKB|E1BEW5307 PPTC7 "Uncharacterized protein 0.660 0.671 0.314 1.3e-22
TAIR|locus:2060822 PBCP "PHOTOSYSTEM II CORE PHOSPHATASE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 922 (329.6 bits), Expect = 1.5e-92, P = 1.5e-92
 Identities = 189/309 (61%), Positives = 230/309 (74%)

Query:     1 MVVPVFRASVASFHPLFDSLCTRLSTNSSLPKNSR---LLPFASSELNPVQSRPELSFCV 57
             M +PV R  V    P   SL  RLS     P  SR   L   A SE+ P+  RPELS  V
Sbjct:     1 MAIPVTRMMVPHAIP---SL--RLSH----PNPSRVDFLCRCAPSEIQPL--RPELSLSV 49

Query:    58 GTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFV 117
             G H IPHP+KVE+GGEDAFFVS Y GGV+AVADGVSGWAEQ+VDPSLFS+ELMANAS  V
Sbjct:    50 GIHAIPHPDKVEKGGEDAFFVSSYRGGVMAVADGVSGWAEQDVDPSLFSKELMANASRLV 109

Query:   118 EDVEVNYDPQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFS 177
             +D EV YDP  L+ KAH AT+S GSAT+I+AMLE  GILK+ +VGDCGL+++R+GQI F+
Sbjct:   110 DDQEVRYDPGFLIDKAHTATTSRGSATIILAMLEEVGILKIGNVGDCGLKLLREGQIIFA 169

Query:   178 SSPQEHYFDCPYQLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTT 237
             ++PQEHYFDCPYQLSSE   QTYLDA  + VE+ +GD IVMGSDGLFDNVFDHE+VS+ T
Sbjct:   170 TAPQEHYFDCPYQLSSEGSAQTYLDASFSIVEVQKGDVIVMGSDGLFDNVFDHEIVSIVT 229

Query:   238 RFIDVSEAAKALANLACSHSTDSNFDSPYTMEARAKGFDVPMWXXXXXXXXXXXXXDDIT 297
             +  DV+E+++ LA +A SHS D+ F+SPY +EARAKGFDVP+W             DD+T
Sbjct:   230 KHTDVAESSRLLAEVASSHSRDTEFESPYALEARAKGFDVPLWKKVLGKKLTGGKLDDVT 289

Query:   298 VIVSQVVNS 306
             VIV++VV+S
Sbjct:   290 VIVAKVVSS 298
GO:0003824 "catalytic activity" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006364 "rRNA processing" evidence=RCA
GO:0009657 "plastid organization" evidence=RCA
GO:0010155 "regulation of proton transport" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0046777 "protein autophosphorylation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=IMP
GO:0035970 "peptidyl-threonine dephosphorylation" evidence=IDA
GO:0071482 "cellular response to light stimulus" evidence=IMP
TAIR|locus:2130834 AT4G16580 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173679 AT5G66720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0280067 DDB_G0280067 "protein phosphatase 2C-related protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00012362 W09D10.4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|B4JYN1 fig "Protein phosphatase PTC7 homolog fig" [Drosophila grimshawi (taxid:7222)] Back     alignment and assigned GO terms
UNIPROTKB|B4NBL6 fig "Protein phosphatase PTC7 homolog fig" [Drosophila willistoni (taxid:7260)] Back     alignment and assigned GO terms
TAIR|locus:2119246 AT4G33500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0029949 CG15035 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEW5 PPTC7 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O64730P2C26_ARATH3, ., 1, ., 3, ., 1, 60.63430.94550.9899yesno
Q942P9P2C01_ORYSJ3, ., 1, ., 3, ., 1, 60.68280.85570.8066yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
smart00332252 smart00332, PP2Cc, Serine/threonine phosphatases, 1e-15
COG0631262 COG0631, PTC1, Serine/threonine protein phosphatas 1e-15
cd00143254 cd00143, PP2Cc, Serine/threonine phosphatases, fam 2e-13
pfam00481252 pfam00481, PP2C, Protein phosphatase 2C 3e-04
smart00331193 smart00331, PP2C_SIG, Sigma factor PP2C-like phosp 0.001
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information 
 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 62/245 (25%), Positives = 94/245 (38%), Gaps = 49/245 (20%)

Query: 49  SRPELSFCVGTHLIPHPNKVERGGEDAFFVSCY---NGGVIAVADGVSGWAEQNVDPSLF 105
           S   L    G         V +  EDA  ++     +GG   V DG  G      + + F
Sbjct: 3   SGKNLGLRYGLS---SMQGVRKPMEDAHVITPDLSDSGGFFGVFDGHGGS-----EAAKF 54

Query: 106 SRELMAN--ASYFVEDVEVNYDPQILMRKAHAAT-------SSVGSATVIVAMLERNGIL 156
             + +    A   +++ +   D +  +RKA  +T           S +  V  L     L
Sbjct: 55  LSKNLPEILAEELIKEKDELEDVEEALRKAFLSTDEEILEELEALSGSTAVVALISGNKL 114

Query: 157 KVASVGDCGLRIIRKG---QITFSSSPQE----------------HYFDCPYQLSSEAVG 197
            VA+VGD    + R G   Q+T    P                     +    LS  A+G
Sbjct: 115 YVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVINGRVNGVLALSR-AIG 173

Query: 198 QTYLDAMV------TTVELIE-GDTIVMGSDGLFDNVFDHEVVSMTTRFI--DVSEAAKA 248
             +L   V      T VEL E  D +++ SDGL+D + + EVV +  + +  D  EAAK 
Sbjct: 174 DFFLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSKDPKEAAKR 233

Query: 249 LANLA 253
           L +LA
Sbjct: 234 LIDLA 238

The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity. Length = 252
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C Back     alignment and domain information
>gnl|CDD|214624 smart00331, PP2C_SIG, Sigma factor PP2C-like phosphatases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 312
KOG1379330 consensus Serine/threonine protein phosphatase [Si 100.0
COG0631262 PTC1 Serine/threonine protein phosphatase [Signal 100.0
PLN03145365 Protein phosphatase 2c; Provisional 100.0
PRK14559645 putative protein serine/threonine phosphatase; Pro 100.0
PTZ00224 381 protein phosphatase 2C; Provisional 100.0
cd00143254 PP2Cc Serine/threonine phosphatases, family 2C, ca 100.0
KOG0697379 consensus Protein phosphatase 1B (formerly 2C) [Si 100.0
smart00332255 PP2Cc Serine/threonine phosphatases, family 2C, ca 99.98
KOG0698330 consensus Serine/threonine protein phosphatase [Si 99.97
PF00481254 PP2C: Protein phosphatase 2C; InterPro: IPR001932 99.97
KOG0699542 consensus Serine/threonine protein phosphatase [Si 99.92
KOG0700390 consensus Protein phosphatase 2C/pyruvate dehydrog 99.91
TIGR02865764 spore_II_E stage II sporulation protein E. Stage I 99.88
KOG1323493 consensus Serine/threonine phosphatase [Signal tra 99.86
PF13672212 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 99.86
smart00331193 PP2C_SIG Sigma factor PP2C-like phosphatases. 99.84
PF07228193 SpoIIE: Stage II sporulation protein E (SpoIIE); I 99.74
COG2208367 RsbU Serine phosphatase RsbU, regulator of sigma s 99.21
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.11
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1e-39  Score=283.05  Aligned_cols=228  Identities=45%  Similarity=0.736  Sum_probs=199.5

Q ss_pred             CCCCCCCCCceEEEeccC-CeEEEEecCCCCcccCCCCHHHHHHHHHHHHhhhhhcccC-CCCHHHHHHHHHhccCCC--
Q 021475           65 PNKVERGGEDAFFVSCYN-GGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEV-NYDPQILMRKAHAATSSV--  140 (312)
Q Consensus        65 ~G~~r~~neDa~~~~~~~-~~~~~V~DG~Gg~~~a~~as~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~--  140 (312)
                      +-+.-+.+||+||+..+. ..+++||||+|||..-.+.+..+.+.|++.+++..+.... ...+..++.+++.+...+  
T Consensus        84 ~~~~~~~GEDa~Fvss~~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~~~~  163 (330)
T KOG1379|consen   84 PSKVGKGGEDAWFVSSNPHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKSQKV  163 (330)
T ss_pred             cccCCCCCCcceeeccCcccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhhcCC
Confidence            444456799999998854 5599999999999888899999999999999998876443 348899999998776554  


Q ss_pred             ---CcccEEEEEEEe-CCEEEEEEeccCceEEEECCeEEEeCCccccccCCCccceeccc------CCccccceEEEEEe
Q 021475          141 ---GSATVIVAMLER-NGILKVASVGDCGLRIIRKGQITFSSSPQEHYFDCPYQLSSEAV------GQTYLDAMVTTVEL  210 (312)
Q Consensus       141 ---~~gtt~~~~l~~-~~~l~~a~vGDsr~~l~r~g~~~~lt~d~~~~~~~p~~l~~~~g------~~~~~~~~~~~~~l  210 (312)
                         |+.|+|++++-. +++|++||+|||-+.++|+|+++.-|.+|+|.+|+|+||+...-      .+.....+..++++
T Consensus       164 ~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~p~~ad~~~~~v  243 (330)
T KOG1379|consen  164 PIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDVPDSADVTSFDV  243 (330)
T ss_pred             CCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCceeeccCCccccccccCCccccceEEEec
Confidence               777777777764 88999999999999999999999999999999999999987642      33344578999999


Q ss_pred             ecCCEEEEEcCCCCCCCCHHHHHHHhccC-----cCHHHHHHHHHHHHHHhcCCCCccChhhHHHHHCCCCchhhhhhhc
Q 021475          211 IEGDTIVMGSDGLFDNVFDHEVVSMTTRF-----IDVSEAAKALANLACSHSTDSNFDSPYTMEARAKGFDVPMWKKILG  285 (312)
Q Consensus       211 ~~~d~liL~SDGl~d~l~~~ei~~~l~~~-----~~~~~~a~~L~~~a~~~~~~dn~~~~~~~~a~~~~~~~~~~~~~~~  285 (312)
                      ++||+|||+||||||++.+++|.+++...     .++|..|+.|++.|++++.+.+..+||+.+|++.|+          
T Consensus       244 ~~GDvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~----------  313 (330)
T KOG1379|consen  244 QKGDVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGF----------  313 (330)
T ss_pred             cCCCEEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCc----------
Confidence            99999999999999999999999999543     479999999999999999999999999999999999          


Q ss_pred             ccccCcccCceEEEEEEE
Q 021475          286 MKLKGGKLDDITVIVSQV  303 (312)
Q Consensus       286 ~~~~~~~~DDiTvivv~~  303 (312)
                       +..||+.||||||+.++
T Consensus       314 -~~~gGK~DdITvvls~v  330 (330)
T KOG1379|consen  314 -KAYGGKPDDITVVLSSV  330 (330)
T ss_pred             -ccCCCCcccEEEEEecC
Confidence             89999999999999864

>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PLN03145 Protein phosphatase 2c; Provisional Back     alignment and domain information
>PRK14559 putative protein serine/threonine phosphatase; Provisional Back     alignment and domain information
>PTZ00224 protein phosphatase 2C; Provisional Back     alignment and domain information
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity Back     alignment and domain information
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms] Back     alignment and domain information
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain Back     alignment and domain information
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02865 spore_II_E stage II sporulation protein E Back     alignment and domain information
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B Back     alignment and domain information
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases Back     alignment and domain information
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg Back     alignment and domain information
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
2j82_A240 Structural Analysis Of The Pp2c Family Phosphatase 4e-04
>pdb|2J82|A Chain A, Structural Analysis Of The Pp2c Family Phosphatase Tppha From Thermosynechococcus Elongatus Length = 240 Back     alignment and structure 
Iteration: 1

 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 33/198 (16%)
Query: 68  VERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVEDVEVNYDPQ 127
           + +  +DAF++   +     VADG+ G A       L    +       +ED++  +DP 
Sbjct: 12  IRKSNQDAFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQ--HDPV 69
Query: 128 ILMRKA-----HA---------ATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQ 173
            L+R+A     HA         A + +G+  V++ + E+      A VGD  +   RK Q
Sbjct: 70  TLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQ 129
Query: 174 ITFSSSPQ--------------EHYFDCPYQ-LSSEAVGQTYLDAM-VTTVELIEGDTIV 217
           +   +S                E     P++ + S+ +G+  L  + +  ++L  GD ++
Sbjct: 130 LQQITSDHTWIAQAVQLGSLTIEQARQHPWRHVLSQCLGREDLSQIDIQPIDLEPGDRLL 189
Query: 218 MGSDGLFDNVFDHEVVSM 235
           + SDGL + + D +V+S+
Sbjct: 190 LCSDGLTEELTD-DVISI 206

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query312
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 6e-09
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 2e-08
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 2e-08
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 3e-08
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 3e-08
1txo_A237 Putative bacterial enzyme; serine/threonine protei 7e-07
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 6e-06
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 1e-05
3rnr_A211 Stage II sporulation E family protein; structural 2e-05
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 2e-05
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 4e-05
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 2e-04
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 2e-04
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Length = 240 Back     alignment and structure
 Score = 54.5 bits (132), Expect = 6e-09
 Identities = 42/218 (19%), Positives = 73/218 (33%), Gaps = 47/218 (21%)

Query: 73  EDAFFVSCYNGGVIAVADGVSG------------------WAEQNVDPSLFSRELMANAS 114
           +DAF++   +     VADG+ G                        D       L+  A 
Sbjct: 17  QDAFYIDEKHQRFFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQA- 75

Query: 115 YFVEDVEVNYDPQILMRKAHAATSSVGSATVIVAML--ERNGILKVASVGDCGLRIIRKG 172
                   N     ++ +    ++     T  V +L  E+      A VGD  +   RK 
Sbjct: 76  --FL--AAN---HAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKD 128

Query: 173 ---QITFSSSPQEHYFDCPYQLSSE-------------AVG-QTYLDAMVTTVELIEGDT 215
              QIT   +           L+ E              +G +      +  ++L  GD 
Sbjct: 129 QLQQITSDHTWIAQAVQL-GSLTIEQARQHPWRHVLSQCLGREDLSQIDIQPIDLEPGDR 187

Query: 216 IVMGSDGLFDNVFDHEVVSMTTRFIDVSEAAKALANLA 253
           +++ SDGL + + D  +    +   +V +AA AL + A
Sbjct: 188 LLLCSDGLTEELTDDVISIYLSE-PNVQKAAAALVDAA 224
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316 Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274 Back     alignment and structure
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Length = 250 Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389 Back     alignment and structure
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Length = 237 Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Length = 234 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Length = 193 Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337 Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Length = 211 Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377 Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382 Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364 Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
2pk0_A250 Serine/threonine protein phosphatase STP1; SI moti 100.0
1txo_A237 Putative bacterial enzyme; serine/threonine protei 100.0
2j82_A240 TPPHA, protein serine-threonine phosphatase; PP2C 100.0
2p8e_A307 PPM1B beta isoform variant 6; structural genomics, 100.0
3kdj_B316 Protein phosphatase 2C 56; ABA, PYL1, abscisic aci 100.0
2iq1_A274 Protein phosphatase 2C kappa, PPM1K; structural ge 100.0
3qn1_B337 Protein phosphatase 2C 16; start domain, BET V dom 100.0
2jfr_A234 Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata 100.0
2i0o_A304 Ser/Thr phosphatase; beta sandwich, structural gen 100.0
1a6q_A382 Phosphatase 2C; catalytic mechanism, metalloenzyme 100.0
2i44_A324 Serine-threonine phosphatase 2C; PSI-2, 8817Z, str 100.0
4da1_A389 Protein phosphatase 1K, mitochondrial; metal-ION-a 100.0
3rnr_A211 Stage II sporulation E family protein; structural 100.0
2irm_A358 Mitogen-activated protein kinase kinase kinase 7 i 100.0
2j4o_A401 Mitogen-activated protein kinase kinase kinase 7-i 100.0
2pnq_A467 [pyruvate dehydrogenase [lipoamide]]-phosphatase 1 100.0
2isn_A364 NYSGXRC-8828Z, phosphatase; pathogenic strain, pra 100.0
3d8k_A377 PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR 100.0
3t91_A242 Stage II sporulation protein E; SPOIIE, phosphatas 99.94
3pu9_A242 Protein serine/threonine phosphatase; PSI-biology, 99.93
3zt9_A193 Serine phosphatase; hydrolase, signal transduction 99.87
3f79_A255 Probable two-component response regulator; adaptor 99.83
3ke6_A 399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 99.55
3eq2_A394 Probable two-component response regulator; adaptor 99.36
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae} Back     alignment and structure
Probab=100.00  E-value=1.1e-38  Score=280.33  Aligned_cols=215  Identities=20%  Similarity=0.227  Sum_probs=169.8

Q ss_pred             EEEEEEEecCCCCCCCCCCceEEEecc--CCeEEEEecCCCCcccCCCCHHHHHHHHH-HHHhhhhh-cccCCCCHHHHH
Q 021475           55 FCVGTHLIPHPNKVERGGEDAFFVSCY--NGGVIAVADGVSGWAEQNVDPSLFSRELM-ANASYFVE-DVEVNYDPQILM  130 (312)
Q Consensus        55 ~~~~~~~~~~~G~~r~~neDa~~~~~~--~~~~~~V~DG~Gg~~~a~~as~~~~~~l~-~~~~~~~~-~~~~~~~~~~l~  130 (312)
                      +.++  ..+++|..|+.|||++++...  +..+|+|||||||+.+|+++|+.+++.+. +.+..... ...........+
T Consensus         6 ~~~~--~~s~~G~~r~~neD~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~   83 (250)
T 2pk0_A            6 MEIS--LLTDIGQRRSNNQDFINQFENKAGVPLIILADGMGGHRAGNIASEMTVTDLGSDWAETDFSELSEIRDWMLVSI   83 (250)
T ss_dssp             EEEE--EEEECCTTCSCCCEEEEEEECTTCCEEEEEEEEECTTTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHH
T ss_pred             EEEE--EecCCCCCCCcCCCceEeccCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHH
Confidence            4444  445688889999999988764  35699999999999999999999998887 33222110 001111122222


Q ss_pred             HHH--------HhccCCCCcccEEEEEEEeCCEEEEEEeccCceEEEECCeEEEeCCccccc--------------cCCC
Q 021475          131 RKA--------HAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHY--------------FDCP  188 (312)
Q Consensus       131 ~~~--------~~~~~~~~~gtt~~~~l~~~~~l~~a~vGDsr~~l~r~g~~~~lt~d~~~~--------------~~~p  188 (312)
                      ..+        .... ..++|||++++++.+++++++|+||||+|++|+|++.+||.||.+.              ..+|
T Consensus        84 ~~~~~~l~~~~~~~~-~~~~gtT~~~~~i~~~~l~~anvGDsr~~l~r~g~~~~lt~dh~~~~~~~~~g~i~~~~~~~~~  162 (250)
T 2pk0_A           84 ETENRKIYELGQSDD-YKGMGTTIEAVAIVGDNIIFAHVGDSRIGIVRQGEYHLLTSDHSLVNELVKAGQLTEEEAASHP  162 (250)
T ss_dssp             HHHHHHHHHHHHHTT-CTTCEECEEEEEEETTEEEEEEESSCEEEEEETTEEEECCCCCBHHHHHHHTTSSCHHHHHTCC
T ss_pred             HHHHHHHHHHHhhCC-CCCCcceEEEEEEECCeEEEEEeCCCeEEEEcCCcEEEeCCCCCHHHHHHHcCCCCHHHHHhCC
Confidence            222        2222 4678999999999999999999999999999999999999999752              1344


Q ss_pred             c--cceecccCCccccceEEEEEeecCCEEEEEcCCCCCCCCHHHHHHHhccCcCHHHHHHHHHHHHHHhcCCCCccChh
Q 021475          189 Y--QLSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAAKALANLACSHSTDSNFDSPY  266 (312)
Q Consensus       189 ~--~l~~~~g~~~~~~~~~~~~~l~~~d~liL~SDGl~d~l~~~ei~~~l~~~~~~~~~a~~L~~~a~~~~~~dn~~~~~  266 (312)
                      +  .+++++|.....+|++..++++++|+||||||||||+++++++.+++.+..+++++|+.|++.|+.+          
T Consensus       163 ~~~~ltralG~~~~~~p~~~~~~l~~gd~lll~SDGl~d~l~~~~i~~~~~~~~~~~~~a~~L~~~a~~~----------  232 (250)
T 2pk0_A          163 QKNIITQSIGQANPVEPDLGVHLLEEGDYLVVNSDGLTNMLSNADIATVLTQEKTLDDKNQDLITLANHR----------  232 (250)
T ss_dssp             SCCCBSCCBSCSSCCCCEEEEEECCTTCEEEEECHHHHTTSCHHHHHHHHTSSSCHHHHHHHHHHHHHHT----------
T ss_pred             CcceEEeecCCCCCccceEEEEEcCCCCEEEEECCCCCCCcCHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------
Confidence            4  4788888877889999999999999999999999999999999999998779999999999999874          


Q ss_pred             hHHHHHCCCCchhhhhhhcccccCcccCceEEEEEEEEeC
Q 021475          267 TMEARAKGFDVPMWKKILGMKLKGGKLDDITVIVSQVVNS  306 (312)
Q Consensus       267 ~~~a~~~~~~~~~~~~~~~~~~~~~~~DDiTvivv~~~~~  306 (312)
                                              +..|||||||+++..+
T Consensus       233 ------------------------g~~DniTvivv~~~~~  248 (250)
T 2pk0_A          233 ------------------------GGLDNITVALVYVESE  248 (250)
T ss_dssp             ------------------------TCCSCEEEEEEEECC-
T ss_pred             ------------------------CCCCCeEEEEEEeeCC
Confidence                                    6789999999999754
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A Back     alignment and structure
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A Back     alignment and structure
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Back     alignment and structure
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Back     alignment and structure
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Back     alignment and structure
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B* Back     alignment and structure
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A Back     alignment and structure
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Back     alignment and structure
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Back     alignment and structure
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Back     alignment and structure
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Back     alignment and structure
>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans} Back     alignment and structure
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae} Back     alignment and structure
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A Back     alignment and structure
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A Back     alignment and structure
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Back     alignment and structure
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Back     alignment and structure
>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A* Back     alignment and structure
>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus} Back     alignment and structure
>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica} Back     alignment and structure
>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 312
d1txoa_235 d.219.1.1 (A:) putative serine/threonine phosphata 2e-14
d1a6qa2295 d.219.1.1 (A:2-296) Protein serine/threonine phosp 0.003
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: putative serine/threonine phosphatase pstp/ppp
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 69.5 bits (169), Expect = 2e-14
 Identities = 49/255 (19%), Positives = 86/255 (33%), Gaps = 60/255 (23%)

Query: 73  EDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVE-------DVEVNYD 125
           ED+ +       ++A+ADG+ G A   V   L    L                D  V   
Sbjct: 19  EDSVYA---GARLLALADGMGGHAAGEVASQLVIAALAHLDDDEPGGDLLAKLDAAVRAG 75

Query: 126 PQILMRKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHYF 185
              +  +        G  T + A+L     L +  +GD    ++R G++T  +       
Sbjct: 76  NSAIAAQVEMEPDLEGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQ 135

Query: 186 DCPYQ---------------LSSEAVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDH 230
               +               L   A+    ++  +T  E   GD  ++ SDGL D V D 
Sbjct: 136 TLVDEGRITPEEAHSHPQRSLIMRALTGHEVEPTLTMREARAGDRYLLCSDGLSDPVSDE 195

Query: 231 EVVSMTTRFIDVSEAAKALANLACSHSTDSNFDSPYTMEARAKGFDVPMWKKILGMKLKG 290
            ++    +  +V+E+A  L  LA                                  L+G
Sbjct: 196 TILE-ALQIPEVAESAHRLIELA----------------------------------LRG 220

Query: 291 GKLDDITVIVSQVVN 305
           G  D++TV+V+ + +
Sbjct: 221 GGPDNVTVVVADLEH 235
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query312
d1txoa_235 putative serine/threonine phosphatase pstp/ppp {My 100.0
d1a6qa2295 Protein serine/threonine phosphatase 2C, catalytic 100.0
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: putative serine/threonine phosphatase pstp/ppp
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.2e-41  Score=292.05  Aligned_cols=209  Identities=22%  Similarity=0.292  Sum_probs=165.2

Q ss_pred             EEEEecCCCCCCCCCCceEEEeccCCeEEEEecCCCCcccCCCCHHHHHHHHHHHHhhhhhc-------ccCCCCHHHHH
Q 021475           58 GTHLIPHPNKVERGGEDAFFVSCYNGGVIAVADGVSGWAEQNVDPSLFSRELMANASYFVED-------VEVNYDPQILM  130 (312)
Q Consensus        58 ~~~~~~~~G~~r~~neDa~~~~~~~~~~~~V~DG~Gg~~~a~~as~~~~~~l~~~~~~~~~~-------~~~~~~~~~l~  130 (312)
                      .+++.+++|..|+.|||++++..   .+|+|||||||+.+|.+||+.+++.+.+.+......       ..+...+..+.
T Consensus         4 ~~~~~s~~G~~R~~nEDa~~~~~---~l~~V~DG~GG~~~g~~as~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~   80 (235)
T d1txoa_           4 RYAARSDRGLVRANNEDSVYAGA---RLLALADGMGGHAAGEVASQLVIAALAHLDDDEPGGDLLAKLDAAVRAGNSAIA   80 (235)
T ss_dssp             EEEEEEECCSSCSSCCEEEEECS---SEEEEEEEECTTTHHHHHHHHHHHHHGGGGSSCCCSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCCCCCccccCC---CEEEEEeCCCCcHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHH
Confidence            45667889988999999999855   799999999999998888888887775433221110       01112222333


Q ss_pred             HHHHhccCCCCcccEEEEEEEeCCEEEEEEeccCceEEEECCeEEEeCCccccc--------------cCCCcc--ceec
Q 021475          131 RKAHAATSSVGSATVIVAMLERNGILKVASVGDCGLRIIRKGQITFSSSPQEHY--------------FDCPYQ--LSSE  194 (312)
Q Consensus       131 ~~~~~~~~~~~~gtt~~~~l~~~~~l~~a~vGDsr~~l~r~g~~~~lt~d~~~~--------------~~~p~~--l~~~  194 (312)
                      +.........++|||++++++.+++++++|+||||+|++|+|++.++|.||...              .+.|.+  +++ 
T Consensus        81 ~~~~~~~~~~~~gtt~~~~~~~~~~l~~anvGDSr~~l~r~g~~~~lt~dH~~~~~~~~~g~~~~~~~~~~~~~~~lt~-  159 (235)
T d1txoa_          81 AQVEMEPDLEGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDEGRITPEEAHSHPQRSLIMR-  159 (235)
T ss_dssp             HHHHHCGGGTTCEECEEEEEEETTEEEEEEESSCEEEEEETTEEEECSCCCBHHHHHHHTTSSCTTGGGGCTTTTCBCC-
T ss_pred             HHhhcccccccceeeeeeeeeccceeEEEecCCccEEEecCCEEEEecCCCcHHHHhhhhcccchhhhhhccccchhhc-
Confidence            333344456778999999999999999999999999999999999999999642              123332  444 


Q ss_pred             ccCCccccceEEEEEeecCCEEEEEcCCCCCCCCHHHHHHHhccCcCHHHHHHHHHHHHHHhcCCCCccChhhHHHHHCC
Q 021475          195 AVGQTYLDAMVTTVELIEGDTIVMGSDGLFDNVFDHEVVSMTTRFIDVSEAAKALANLACSHSTDSNFDSPYTMEARAKG  274 (312)
Q Consensus       195 ~g~~~~~~~~~~~~~l~~~d~liL~SDGl~d~l~~~ei~~~l~~~~~~~~~a~~L~~~a~~~~~~dn~~~~~~~~a~~~~  274 (312)
                      .++....+|++..++++++|+||||||||||+++++++.+++.. .+++++|+.|+++|+++                  
T Consensus       160 ~~g~~~~~pdi~~~~l~~~D~llL~SDGl~d~l~~~ei~~i~~~-~~~~~~a~~Lv~~A~~~------------------  220 (235)
T d1txoa_         160 ALTGHEVEPTLTMREARAGDRYLLCSDGLSDPVSDETILEALQI-PEVAESAHRLIELALRG------------------  220 (235)
T ss_dssp             CBSSSCCCCEEEEEECCTTCEEEEECHHHHTTSCHHHHHHHHTS-SSHHHHHHHHHHHHHHT------------------
T ss_pred             ccccccccceEEEEecCCCCEEEEcCcchhcCCCHHHHHHHHhC-CCHHHHHHHHHHHHHhc------------------
Confidence            44556778999999999999999999999999999999999976 69999999999999874                  


Q ss_pred             CCchhhhhhhcccccCcccCceEEEEEEEEe
Q 021475          275 FDVPMWKKILGMKLKGGKLDDITVIVSQVVN  305 (312)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~DDiTvivv~~~~  305 (312)
                                      |+.|||||||++++.
T Consensus       221 ----------------gs~DNiTvivv~l~~  235 (235)
T d1txoa_         221 ----------------GGPDNVTVVVADLEH  235 (235)
T ss_dssp             ----------------TCCSCEEEEEEEEEC
T ss_pred             ----------------CCCCCEEEEEEEEeC
Confidence                            788999999999863
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure