BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021476
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E0Q|A Chain A, Crystal Structure Of Mpn Domain From Cop9 Signalosome
pdb|4E0Q|B Chain B, Crystal Structure Of Mpn Domain From Cop9 Signalosome
Length = 141
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 87/155 (56%), Gaps = 20/155 (12%)
Query: 4 SSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSAXXXXXXXXXGAQPR-VYGCVIGIQR 62
S +T LHPLVI NIS+H+TR ++Q +PR VYG +IG Q+
Sbjct: 1 GSHXSVTISLHPLVIXNISEHWTRFRAQH----------------GEPRQVYGALIGKQK 44
Query: 63 GRTVEIFNSFELLYD--PSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMH 120
GR +EI NSFEL D +++ + KK++ YK+VF +GWY+TG + D+
Sbjct: 45 GRNIEIXNSFELKTDVIGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIK 104
Query: 121 IHKALMDINESPVYVLLNPSINPAQKDLPVTIFES 155
I + + INE P+ + LNP ++ + LP+ +FES
Sbjct: 105 IQRQIAAINECPIXLQLNP-LSRSVDHLPLKLFES 138
>pdb|2O96|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
pdb|2O96|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-177)
Length = 178
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 32/176 (18%)
Query: 13 LHPLVIVNISDHYTRVKSQMNHSSSAXXXXXXXXXGAQPRVYGCVIGIQRGRTVEIFNSF 72
+HPLV++++ DH+ R+ G Q RV G ++G + + +++ NSF
Sbjct: 12 VHPLVLLSVVDHFNRIGK----------------VGNQKRVVGVLLGSWQKKVLDVSNSF 55
Query: 73 ELLYDP-----STHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMD 127
+ +D S LD +LE ++KKV I+GWY TG ++D+ I++ +
Sbjct: 56 AVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKR 115
Query: 128 INESPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIPQLIFVRSSYTIETVEAE 181
+ V V+++ + P LP + S E+H +G P +S T E V +E
Sbjct: 116 YCPNSVLVIID--VKPKDLGLPTEAYISVEEVH-DDGTP------TSKTFEHVTSE 162
>pdb|2O95|A Chain A, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
pdb|2O95|B Chain B, Crystal Structure Of The Metal-Free Dimeric Human Mov34
Mpn Domain (Residues 1-186)
Length = 187
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 32/176 (18%)
Query: 13 LHPLVIVNISDHYTRVKSQMNHSSSAXXXXXXXXXGAQPRVYGCVIGIQRGRTVEIFNSF 72
+HPLV++++ DH+ R+ G Q RV G ++G + + +++ NSF
Sbjct: 12 VHPLVLLSVVDHFNRIGK----------------VGNQKRVVGVLLGSWQKKVLDVSNSF 55
Query: 73 ELLYDP-----STHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMD 127
+ +D S LD +LE ++KKV I+GWY TG ++D+ I++ +
Sbjct: 56 AVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKR 115
Query: 128 INESPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIPQLIFVRSSYTIETVEAE 181
+ V V+++ + P LP + S E+H +G P +S T E V +E
Sbjct: 116 YCPNSVLVIID--VKPKDLGLPTEAYISVEEVH-DDGTP------TSKTFEHVTSE 162
>pdb|4B4T|U Chain U, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 338
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 98/246 (39%), Gaps = 60/246 (24%)
Query: 15 PLVIVNISDHYTRVKSQMNHSSSAXXXXXXXXXGAQPRVYGCVIGIQRGRTVEIFNSFEL 74
PLV+++ DHY R +++ N R G ++G T+ + NSF L
Sbjct: 12 PLVLLSALDHYERTQTKENK-----------------RCVGVILGDANSSTIRVTNSFAL 54
Query: 75 LYDPSTHS-----LDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDIN 129
++ + LD ++E E+ KK+ ++GWY +G + SD+ I++
Sbjct: 55 PFEEDEKNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKK-- 112
Query: 130 ESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDH-- 187
Y NP + L V + + + G+P +V IE V+ + S +
Sbjct: 113 ----YTQNNPLL------LIVDVKQQGV----GLPTDAYV----AIEQVKDDGTSTEKTF 154
Query: 188 ----------------VAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAM 231
V HL AA L+ LT ++K L S+++ + YL +
Sbjct: 155 LHLPCTIEAEEAEEIGVEHLLRDVRDQAAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKV 214
Query: 232 QKGEIP 237
E+P
Sbjct: 215 INKELP 220
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 82 SLDRAFLEKKQELYKKVFPHF-----YILGWYSTGSDAQESDMHIHKALMD 127
S++R + EK+ EL +VF YI+GW+S G A+ I K D
Sbjct: 28 SVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIXKIAPD 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,248,617
Number of Sequences: 62578
Number of extensions: 303231
Number of successful extensions: 579
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 5
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)