BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021476
(312 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W206|CSN6A_ARATH COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana
GN=CSN6A PE=1 SV=2
Length = 317
Score = 546 bits (1408), Expect = e-155, Method: Compositional matrix adjust.
Identities = 261/317 (82%), Positives = 286/317 (90%), Gaps = 5/317 (1%)
Query: 1 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNG-----AQPRVYG 55
MA SSSSGLTFKLHPLVIVNISDHYTRVK+Q+N +S + +NNG PRVYG
Sbjct: 1 MAPSSSSGLTFKLHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYG 60
Query: 56 CVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQ 115
CVIG+QRGRTVEIFNSFELLYDPST +LDR+FLEKKQELYKKVFP FYILGWYSTGSDA+
Sbjct: 61 CVIGVQRGRTVEIFNSFELLYDPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAE 120
Query: 116 ESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTI 175
ESDMHIHKALMDINESPVYVLLNP+IN QKDLPVTI+ESELHVI+GIPQLIF +SYTI
Sbjct: 121 ESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFAHTSYTI 180
Query: 176 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGE 235
ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVL+ L AMQKG+
Sbjct: 181 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQKGD 240
Query: 236 IPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKF 295
C+NS+LRQVSSLLRRLPA+ESE+FQD+FLMEYND LLI YLAM TNC+S MNE+VDKF
Sbjct: 241 KSCDNSVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKF 300
Query: 296 NTAYDRHSRRGGRTAFI 312
NTAYDR++RRGGRTAF+
Sbjct: 301 NTAYDRNTRRGGRTAFM 317
>sp|Q8W1P0|CSN6B_ARATH COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana
GN=CSN6B PE=1 SV=2
Length = 317
Score = 535 bits (1377), Expect = e-151, Method: Compositional matrix adjust.
Identities = 252/317 (79%), Positives = 285/317 (89%), Gaps = 5/317 (1%)
Query: 1 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNG-----AQPRVYG 55
MA SSSSGLTFKLHPLV++NISDH+TRVK+Q+N +++ T + +NN PRVYG
Sbjct: 1 MAPSSSSGLTFKLHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADAMLLQNPRVYG 60
Query: 56 CVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQ 115
CVIG+QRGRTVEIFNSFEL++DP+ +LDR+FLEKKQELYKKVFP FY+LGWYSTGSDA
Sbjct: 61 CVIGLQRGRTVEIFNSFELIFDPALDTLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDAT 120
Query: 116 ESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTI 175
ESDMHIHKALMDINESPVYVLLNP+IN AQKDLPVTI+ESE HVI+GIPQ IFV +SYTI
Sbjct: 121 ESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIFVHTSYTI 180
Query: 176 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGE 235
ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVL+ ++VAMQKG+
Sbjct: 181 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHIVAMQKGD 240
Query: 236 IPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKF 295
PCENS+LRQVSSLLR LPA ESEKF ++FLMEYND LL++YLAM TNC S MNE+VDKF
Sbjct: 241 KPCENSVLRQVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKF 300
Query: 296 NTAYDRHSRRGGRTAFI 312
NTAYD+HSRRGGRTAF+
Sbjct: 301 NTAYDKHSRRGGRTAFM 317
>sp|Q54C92|CSN6_DICDI COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum
GN=csn6 PE=1 SV=1
Length = 309
Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 132/305 (43%), Positives = 199/305 (65%), Gaps = 21/305 (6%)
Query: 3 SSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQR 62
S++SSGL LHPLV++NISDH+TR K Q N+ + RV G ++G+Q
Sbjct: 20 SANSSGLEVDLHPLVLINISDHFTRTKVQSNYQDNC-------------RVIGVILGVQN 66
Query: 63 GRTVEIFNSFELLYDPSTHSL--DRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMH 120
GR VEI NSFE++Y L D +L KK Y+++FP + +LGWYSTGS + D+
Sbjct: 67 GRNVEICNSFEMVYATVDKQLVLDIEYLRKK---YEQLFPLYDLLGWYSTGSQVSKDDIL 123
Query: 121 IHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEA 180
+HK + + NESP+Y++L+ +P KDLPV I+ESELH++ P IFV++ Y I+T EA
Sbjct: 124 LHKQISEHNESPLYLMLDTD-SPKSKDLPVIIYESELHIVNDEPTTIFVKTPYKIQTGEA 182
Query: 181 ERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCEN 240
ERI V+H+A + PS GS + L +HL +H+AI MLN R++ L YL A+++ +P E
Sbjct: 183 ERIGVNHIAKVTPS--GSEGSGLTSHLFTMHNAISMLNIRVKALSDYLQAVKEKRLPYEQ 240
Query: 241 SLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYD 300
++LR+ SSL +LP I++ F+ +L EYND LL+ YLA T ++++N+ +DK+ + +
Sbjct: 241 NILRKASSLCNQLPTIDTHDFKKSYLQEYNDVLLVTYLASITKTSASLNDTIDKYLVSNE 300
Query: 301 RHSRR 305
+ S+R
Sbjct: 301 KQSKR 305
>sp|Q5REY0|CSN6_PONAB COP9 signalosome complex subunit 6 OS=Pongo abelii GN=COPS6 PE=2
SV=1
Length = 328
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/305 (40%), Positives = 182/305 (59%), Gaps = 20/305 (6%)
Query: 1 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGI 60
MAS + ++ LHPLVI+NISDH+ R++SQ G +V G +IG
Sbjct: 32 MASGVTGSVSVALHPLVILNISDHWIRMRSQ---------------EGRPVQVIGALIGK 76
Query: 61 QRGRTVEIFNSFELLYDPSTHSL--DRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESD 118
Q GR +E+ NSFELL + D+ + K+E +K+VF LGWY+TG SD
Sbjct: 77 QEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSD 136
Query: 119 MHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETV 178
+H+HK + +I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T
Sbjct: 137 IHVHKQVCEIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATE 194
Query: 179 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC 238
EAERI VDHVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P
Sbjct: 195 EAERIGVDHVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPF 253
Query: 239 ENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTA 298
+ +LR+ +L LP + ++KF+ DF + ND L+AYL T +TMN+ V+KFN
Sbjct: 254 NHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVL 313
Query: 299 YDRHS 303
YDR
Sbjct: 314 YDRQG 318
>sp|A7TX81|CSN6_PIG COP9 signalosome complex subunit 6 OS=Sus scrofa GN=COPS6 PE=2 SV=1
Length = 323
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/305 (40%), Positives = 182/305 (59%), Gaps = 20/305 (6%)
Query: 1 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGI 60
MAS + ++ LHPLVI+NISDH+ R++SQ G +V G +IG
Sbjct: 27 MASGVTGSVSVALHPLVILNISDHWIRMRSQ---------------EGRPMQVIGALIGK 71
Query: 61 QRGRTVEIFNSFELLYDPSTHSL--DRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESD 118
Q GR +E+ NSFELL + D+ + K+E +K+VF LGWY+TG SD
Sbjct: 72 QEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSD 131
Query: 119 MHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETV 178
+H+HK + +I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T
Sbjct: 132 IHVHKQVCEIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATE 189
Query: 179 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC 238
EAERI VDHVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P
Sbjct: 190 EAERIGVDHVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPF 248
Query: 239 ENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTA 298
+ +LR+ +L LP + ++KF+ DF + ND L+AYL T +TMN+ V+KFN
Sbjct: 249 NHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVL 308
Query: 299 YDRHS 303
YDR
Sbjct: 309 YDRQG 313
>sp|O88545|CSN6_MOUSE COP9 signalosome complex subunit 6 OS=Mus musculus GN=Cops6 PE=1
SV=1
Length = 324
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/305 (40%), Positives = 182/305 (59%), Gaps = 20/305 (6%)
Query: 1 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGI 60
MAS + ++ LHPLVI+NISDH+ R++SQ G +V G +IG
Sbjct: 28 MASGVTGSVSVALHPLVILNISDHWIRMRSQ---------------EGRPMQVIGALIGK 72
Query: 61 QRGRTVEIFNSFELLYDPSTHSL--DRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESD 118
Q GR +E+ NSFELL + D+ + K+E +K+VF LGWY+TG SD
Sbjct: 73 QEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSD 132
Query: 119 MHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETV 178
+H+HK + +I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T
Sbjct: 133 IHVHKQVCEIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATE 190
Query: 179 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC 238
EAERI VDHVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P
Sbjct: 191 EAERIGVDHVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPF 249
Query: 239 ENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTA 298
+ +LR+ +L LP + ++KF+ DF + ND L+AYL T +TMN+ V+KFN
Sbjct: 250 NHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVL 309
Query: 299 YDRHS 303
YDR
Sbjct: 310 YDRQG 314
>sp|A6QQ21|CSN6_BOVIN COP9 signalosome complex subunit 6 OS=Bos taurus GN=COPS6 PE=2 SV=1
Length = 324
Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 124/305 (40%), Positives = 182/305 (59%), Gaps = 20/305 (6%)
Query: 1 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGI 60
MAS + ++ LHPLVI+NISDH+ R++SQ G +V G +IG
Sbjct: 28 MASGVTGSVSVALHPLVILNISDHWIRMRSQ---------------EGRPMQVIGALIGK 72
Query: 61 QRGRTVEIFNSFELLYDPSTHSL--DRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESD 118
Q GR +E+ NSFELL + D+ + K+E +K+VF LGWY+TG SD
Sbjct: 73 QEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELDFLGWYTTGGPPDPSD 132
Query: 119 MHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETV 178
+H+HK + +I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T
Sbjct: 133 IHVHKQVCEIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATE 190
Query: 179 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC 238
EAERI VDHVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P
Sbjct: 191 EAERIGVDHVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPF 249
Query: 239 ENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTA 298
+ +LR+ +L LP + ++KF+ DF + ND L+AYL T +TMN+ V+KFN
Sbjct: 250 NHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVL 309
Query: 299 YDRHS 303
YDR
Sbjct: 310 YDRQG 314
>sp|Q7L5N1|CSN6_HUMAN COP9 signalosome complex subunit 6 OS=Homo sapiens GN=COPS6 PE=1
SV=1
Length = 327
Score = 238 bits (606), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 123/305 (40%), Positives = 181/305 (59%), Gaps = 20/305 (6%)
Query: 1 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGI 60
MA + ++ LHPLVI+NISDH+ R++SQ G +V G +IG
Sbjct: 31 MACGVTGSVSVALHPLVILNISDHWIRMRSQ---------------EGRPVQVIGALIGK 75
Query: 61 QRGRTVEIFNSFELLYDPSTHSL--DRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESD 118
Q GR +E+ NSFELL + D+ + K+E +K+VF LGWY+TG SD
Sbjct: 76 QEGRNIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSD 135
Query: 119 MHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETV 178
+H+HK + +I ESP+++ LNP DLPV++FES + +I G ++F +YT+ T
Sbjct: 136 IHVHKQVCEIIESPLFLKLNPMTK--HTDLPVSVFESVIDIINGEATMLFAELTYTLATE 193
Query: 179 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC 238
EAERI VDHVA + + G +T +A HL HSAIKML+SR++++ Y+ A + GE+P
Sbjct: 194 EAERIGVDHVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPF 252
Query: 239 ENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTA 298
+ +LR+ +L LP + ++KF+ DF + ND L+AYL T +TMN+ V+KFN
Sbjct: 253 NHEILREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVL 312
Query: 299 YDRHS 303
YDR
Sbjct: 313 YDRQG 317
>sp|Q6NUC2|CSN6_XENLA COP9 signalosome complex subunit 6 OS=Xenopus laevis GN=cops6 PE=2
SV=1
Length = 318
Score = 237 bits (605), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 122/305 (40%), Positives = 183/305 (60%), Gaps = 20/305 (6%)
Query: 1 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGI 60
MA + +T LHPLVI+NISDH+ R++SQ G +V G +IG
Sbjct: 22 MAQGVTGSVTVALHPLVILNISDHWIRMRSQ---------------EGRPMQVIGALIGK 66
Query: 61 QRGRTVEIFNSFELL--YDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESD 118
Q GR +E+ NSFELL + ++++ + K+E +K+VF LGWY+TG SD
Sbjct: 67 QEGRNIEVMNSFELLSQINDEKITINKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSD 126
Query: 119 MHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETV 178
+H+HK + +I ESP+++ LNP DLPV+++ES + ++ G ++ SYT+ T
Sbjct: 127 IHVHKQVCEIIESPLFLKLNPMTK--HTDLPVSVYESVIDIVNGEATMLLAELSYTLATE 184
Query: 179 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC 238
EAERI VDHVA + + G +T +A HL HSAIKML+SR+R++ Y+ A + GE+P
Sbjct: 185 EAERIGVDHVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVRLILEYVRAAEGGEVPF 243
Query: 239 ENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTA 298
+ +LR+ S+L LP + ++KF+ DF + ND L++YL T +TMN+ V+KFN
Sbjct: 244 NHEILREASALCHCLPVLSTDKFKTDFYDQCNDVGLMSYLGTITKTCNTMNQFVNKFNIL 303
Query: 299 YDRHS 303
YDR
Sbjct: 304 YDRQG 308
>sp|Q07G98|CSN6_XENTR COP9 signalosome complex subunit 6 OS=Xenopus tropicalis GN=cops6
PE=2 SV=1
Length = 319
Score = 236 bits (603), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 122/305 (40%), Positives = 183/305 (60%), Gaps = 20/305 (6%)
Query: 1 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGI 60
MA + +T LHPLVI+NISDH+ R++SQ G +V G +IG
Sbjct: 23 MAQGVTGSVTVALHPLVILNISDHWIRMRSQ---------------EGRPVQVIGALIGK 67
Query: 61 QRGRTVEIFNSFELL--YDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESD 118
Q GR +E+ NSFELL + ++++ + K+E +K+VF LGWY+TG SD
Sbjct: 68 QEGRNIEVMNSFELLSQINEEKITINKEYYYTKEEQFKQVFKDMEFLGWYTTGGTPDPSD 127
Query: 119 MHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETV 178
+H+HK + +I ESP+++ LNP DLPV+++ES + ++ G ++ SYT+ T
Sbjct: 128 IHVHKQVCEIIESPLFLKLNPMTK--HTDLPVSVYESVIDIVNGEATMLLAELSYTLATE 185
Query: 179 EAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC 238
EAERI VDHVA + + G +T +A HL HSAIKML+SR+R++ Y+ A + GE+P
Sbjct: 186 EAERIGVDHVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVRLILEYVRAAEAGEVPF 244
Query: 239 ENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTA 298
+ +LR+ S+L LP + ++KF+ DF + ND L++YL T +TMN+ V+KFN
Sbjct: 245 NHEILREASALCHCLPVLSTDKFKMDFYDQCNDVGLMSYLGTITKTCNTMNQFVNKFNIL 304
Query: 299 YDRHS 303
YDR
Sbjct: 305 YDRQG 309
>sp|Q9VCY3|CSN6_DROME COP9 signalosome complex subunit 6 OS=Drosophila melanogaster
GN=CSN6 PE=1 SV=1
Length = 341
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 183/306 (59%), Gaps = 20/306 (6%)
Query: 1 MASSSSSG-LTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIG 59
MA++ +SG +T LHPLVI+NIS+H+TR ++Q +G +VYG +IG
Sbjct: 43 MAAAGTSGSVTISLHPLVIMNISEHWTRFRAQ---------------HGEPRQVYGALIG 87
Query: 60 IQRGRTVEIFNSFELLYD--PSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQES 117
Q+GR +EI NSFEL D +++ + KK++ YK+VF +GWY+TG +
Sbjct: 88 KQKGRNIEIMNSFELKTDVIGDETVINKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTAD 147
Query: 118 DMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIET 177
D+ I + + INE P+ + LNP ++ + LP+ +FES + +++G ++FV +YT+ T
Sbjct: 148 DIKIQRQIAAINECPIMLQLNP-LSRSVDHLPLKLFESLIDLVDGEATMLFVPLTYTLAT 206
Query: 178 VEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIP 237
EAERI VDHVA + ++ G + +A HL SAIKMLN+RI+++ Y+ ++ G++
Sbjct: 207 EEAERIGVDHVARMTSNESGEKSV-VAEHLVAQDSAIKMLNTRIKIVLQYIRDVEAGKLR 265
Query: 238 CENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNT 297
+LR+ +L RLP ++ FQ++F + ND LI+YL T + M+ V+KFN
Sbjct: 266 ANQEILREAYALCHRLPVMQVPAFQEEFYTQCNDVGLISYLGTLTKGCNDMHHFVNKFNM 325
Query: 298 AYDRHS 303
YDR
Sbjct: 326 LYDRQG 331
>sp|O24412|PSD7_ARATH Probable 26S proteasome non-ATPase regulatory subunit 7
OS=Arabidopsis thaliana GN=RPN8 PE=2 SV=1
Length = 308
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 140/290 (48%), Gaps = 32/290 (11%)
Query: 13 LHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSF 72
+HPLV+++I DHY RV + RV G ++G V++ NS+
Sbjct: 19 VHPLVLLSIVDHYNRVAKD-----------------SSKRVVGVLLGSSSRGVVDVTNSY 61
Query: 73 ELLY-----DPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMD 127
+ + DPS LD + E ++K++ +++GWYSTG +E+D+ +H
Sbjct: 62 AVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNG 121
Query: 128 INESPVYVLLNPSINPAQKDLPVTIFESELHVIEGI---PQLIFVRSSYTIETVEAERIS 184
+PV V+++ + P + +P + + V E Q +FV S I E E I
Sbjct: 122 YVPNPVLVIID--VQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIG 179
Query: 185 VDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLL 243
V+H+ +K + + AT++ A LT A+K L++R+R + YL + +G++P + +L
Sbjct: 180 VEHLLRDVKDTTISTLATEVTAKLT----ALKGLDARLREIRSYLDLVIEGKLPLNHEIL 235
Query: 244 RQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVD 293
+ + LP + + F ++ ND +L+ YL+ ++ L++
Sbjct: 236 YHLQDVFNLLPNLNVNELVKAFSVKTNDMMLVIYLSSLIRSVIALHNLIN 285
>sp|Q95PZ0|CSN6_CAEEL COP9 signalosome complex subunit 6 OS=Caenorhabditis elegans
GN=csn-6 PE=1 SV=1
Length = 426
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 138/314 (43%), Gaps = 40/314 (12%)
Query: 2 ASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQ 61
A S S LHPLVI+ +S+HY+R K Q + +V+G ++G Q
Sbjct: 5 APSGSCSSKVLLHPLVIMQMSEHYSRTKVQQGPTVK--------------KVFGAILGRQ 50
Query: 62 RGRTVEIFNSF------ELLYDPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSD-- 113
GR VE NSF E + +P T S + L ++ + Y +VFP ++G Y G D
Sbjct: 51 NGRQVEAINSFVLKMETEEMAEPVTFSTE--HLLQRADQYLEVFPELQVIGLYCAGEDDN 108
Query: 114 -AQESDMHIHKALMDINESP--------VYVLLNPSINPAQKDLPVTIFESELHVIEGIP 164
E + K + S +++ LN + LP+ FE+++ E
Sbjct: 109 LTPEEKPLLSKLTNAVRNSEKAGQIDATLFLKLNSITAGTTRKLPLFAFEADVTDQEKHK 168
Query: 165 QLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVL 224
+ ++ + + E+ER+ V+H+A L G + H +A+ ML +R+ ++
Sbjct: 169 PIEWI-----LVSEESERVGVNHIAKLSTKHGKDGKSVGKKHAEAQDAAMSMLQNRVDLI 223
Query: 225 HHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIE--SEKFQDDFLMEYNDTLLIAYLAMFT 282
YL +Q G + +L++ + L ++L I+ + +F D F E + + + T
Sbjct: 224 VAYLEKVQDGTLQPNFEILKEANLLAQKLKTIDRYAAEFTDSFEKEEKTMTVFSLMPRLT 283
Query: 283 NCASTMNELVDKFN 296
M + +K +
Sbjct: 284 TLLGNMQNVWNKLS 297
>sp|Q3ZBD0|PSD7_BOVIN 26S proteasome non-ATPase regulatory subunit 7 OS=Bos taurus
GN=PSMD7 PE=2 SV=1
Length = 322
Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 138/305 (45%), Gaps = 36/305 (11%)
Query: 13 LHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSF 72
+HPLV++++ DH+ R+ G Q RV G ++G + + +++ NSF
Sbjct: 11 VHPLVLLSVVDHFNRIGKV----------------GNQKRVVGVLLGSWQKKVLDVSNSF 54
Query: 73 ELLYDP-----STHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMD 127
+ +D S LD +LE ++KKV I+GWY TG ++D+ I++ +
Sbjct: 55 AVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKR 114
Query: 128 INESPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIPQLIFVRSSYTIETVEAE---- 181
+ V V+++ + P LP + S E+H +G P +S T E V +E
Sbjct: 115 YCPNSVLVIID--VKPKDLGLPTEAYISVEEVH-DDGTP------TSKTFEHVTSEIGAE 165
Query: 182 RISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENS 241
V HL + L+ +T +K LNS++ + YL + G++P +
Sbjct: 166 EAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRGYLEKVATGKLPINHQ 225
Query: 242 LLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 301
++ Q+ + LP + ++F F ++ ND +++ YLA ++ L++ D
Sbjct: 226 IIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDA 285
Query: 302 HSRRG 306
+ G
Sbjct: 286 EKKEG 290
>sp|P51665|PSD7_HUMAN 26S proteasome non-ATPase regulatory subunit 7 OS=Homo sapiens
GN=PSMD7 PE=1 SV=2
Length = 324
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 135/292 (46%), Gaps = 36/292 (12%)
Query: 13 LHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSF 72
+HPLV++++ DH+ R+ G Q RV G ++G + + +++ NSF
Sbjct: 11 VHPLVLLSVVDHFNRIGKV----------------GNQKRVVGVLLGSWQKKVLDVSNSF 54
Query: 73 ELLYDP-----STHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMD 127
+ +D S LD +LE ++KKV I+GWY TG ++D+ I++ +
Sbjct: 55 AVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKR 114
Query: 128 INESPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIPQLIFVRSSYTIETVEAE---- 181
+ V V+++ + P LP + S E+H +G P +S T E V +E
Sbjct: 115 YCPNSVLVIID--VKPKDLGLPTEAYISVEEVH-DDGTP------TSKTFEHVTSEIGAE 165
Query: 182 RISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENS 241
V HL + L+ +T +K LNS++ + YL + G++P +
Sbjct: 166 EAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQ 225
Query: 242 LLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVD 293
++ Q+ + LP + ++F F ++ ND +++ YLA ++ L++
Sbjct: 226 IIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLIN 277
>sp|P26516|PSD7_MOUSE 26S proteasome non-ATPase regulatory subunit 7 OS=Mus musculus
GN=Psmd7 PE=1 SV=2
Length = 321
Score = 91.7 bits (226), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 134/292 (45%), Gaps = 36/292 (12%)
Query: 13 LHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSF 72
+HPLV++++ DH+ R+ G Q RV G ++G + + +++ NSF
Sbjct: 11 VHPLVLLSVVDHFNRIGKV----------------GNQKRVVGVLLGSWQKKVLDVSNSF 54
Query: 73 ELLYDP-----STHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMD 127
+ +D S LD +LE ++KKV I+GWY TG ++D+ I++ +
Sbjct: 55 AVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKR 114
Query: 128 INESPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIPQLIFVRSSYTIETVEAE---- 181
+ V V+++ + P LP + S E+H +G P +S T E V +E
Sbjct: 115 YCPNSVLVIID--VKPKDLGLPTEAYISVEEVH-DDGTP------TSKTFEHVTSEIGAE 165
Query: 182 RISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENS 241
V HL + L+ +T +K LNS++ + YL + G++P +
Sbjct: 166 EAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVASGKLPINHQ 225
Query: 242 LLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVD 293
++ Q+ + LP ++F F ++ ND +++ YLA ++ L++
Sbjct: 226 IIYQLQDVFNLLPDASLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLIN 277
>sp|Q54WI8|PSD7_DICDI 26S proteasome non-ATPase regulatory subunit 7 OS=Dictyostelium
discoideum GN=psmD7 PE=3 SV=1
Length = 325
Score = 91.3 bits (225), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 136/302 (45%), Gaps = 35/302 (11%)
Query: 13 LHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSF 72
+HP V++++ DHY RV N RV G ++G V++ N +
Sbjct: 10 VHPTVLLSVVDHYNRVAKDTNK-----------------RVVGALLGSNNKGVVDVSNCY 52
Query: 73 ELLYD-----PSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMD 127
L ++ P+ LD F E ++KK+ ++GWYSTG + +D I++
Sbjct: 53 GLPFEEDEANPNIWFLDHNFHENMFAMFKKINARENVVGWYSTGPKIRPADQDINELFRR 112
Query: 128 INESPVYVLLNPSINPAQKDLP----VTIFESELHVIEGIPQLIFVRSSYTIETVEAERI 183
+PV V+++ + P + +P VT+ E E + + SS I+ VEAE I
Sbjct: 113 YTPNPVMVIID--VAPKELGIPTKSYVTVEEINKDTSESTMRFQHIPSS--IDAVEAEEI 168
Query: 184 SVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLL 243
++H+ S+ + L +T ++K L + ++ + HYL + G +P + ++
Sbjct: 169 CIEHLLR---DVKDSSISSLTTQITDKKISLKHLLTNLQEMQHYLKLVCDGTLPPNHQII 225
Query: 244 RQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDRHS 303
+ ++ P + + + F ++ NDT+ + YL+ ++ L+ N +R +
Sbjct: 226 GYIQDIINLSPNLNANEISKSFAVQNNDTMSVIYLSSMIRSIIALHNLI--INKTANREA 283
Query: 304 RR 305
+
Sbjct: 284 EK 285
>sp|A5A6I3|EIF3F_PANTR Eukaryotic translation initiation factor 3 subunit F OS=Pan
troglodytes GN=EIF3F PE=2 SV=1
Length = 361
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 133/290 (45%), Gaps = 31/290 (10%)
Query: 7 SGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTV 66
G +LHP+++ +I D Y R N GA RV G ++G +V
Sbjct: 92 GGRVVRLHPVILASIVDSYER-----------------RNEGAA-RVIGTLLGTVDKHSV 133
Query: 67 EIFNSFELLYDPSTH--SLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKA 124
E+ N F + ++ S ++D F + EL+KKV P+ ILGWY+TG D E + IH+
Sbjct: 134 EVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEY 193
Query: 125 LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIP----QLIFVRSSYTIETVEA 180
+P+++ ++ S+ + + ++ + + G+P ++F + +
Sbjct: 194 YSREAPNPIHLTVDTSLQNGRMSI-----KAYVSTLMGVPGRTMGVMFTPLTVKYAYYDT 248
Query: 181 ERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCEN 240
ERI VD + +K + L++ L + A + + + Y + G++ +N
Sbjct: 249 ERIGVDLI--MKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADN 306
Query: 241 SLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 290
++ R + SL+ ++P I + F+ ND L++ YLA T +NE
Sbjct: 307 TVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNE 356
>sp|Q4R5B8|EIF3F_MACFA Eukaryotic translation initiation factor 3 subunit F OS=Macaca
fascicularis GN=EIF3F PE=2 SV=1
Length = 361
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 133/290 (45%), Gaps = 31/290 (10%)
Query: 7 SGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTV 66
G +LHP+++ +I D Y R N GA RV G ++G +V
Sbjct: 92 GGRVVRLHPVILASIVDSYER-----------------RNEGAA-RVIGTLLGTVDKHSV 133
Query: 67 EIFNSFELLYDPSTH--SLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKA 124
E+ N F + ++ S ++D F + EL+KKV P+ ILGWY+TG D E + IH+
Sbjct: 134 EVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEY 193
Query: 125 LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIP----QLIFVRSSYTIETVEA 180
+P+++ ++ S+ + + ++ + + G+P ++F + +
Sbjct: 194 YSREAPNPIHLTVDTSLQNGRMSI-----KAYVSTLMGVPGRTMGVMFTPLTVKYAYYDT 248
Query: 181 ERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCEN 240
ERI VD + +K + L++ L + A + + + Y + G++ +N
Sbjct: 249 ERIGVDLI--MKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADN 306
Query: 241 SLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 290
++ R + SL+ ++P I + F+ ND L++ YLA T +NE
Sbjct: 307 TVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNE 356
>sp|O00303|EIF3F_HUMAN Eukaryotic translation initiation factor 3 subunit F OS=Homo
sapiens GN=EIF3F PE=1 SV=1
Length = 357
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 133/290 (45%), Gaps = 31/290 (10%)
Query: 7 SGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTV 66
G +LHP+++ +I D Y R N GA RV G ++G +V
Sbjct: 88 GGRVVRLHPVILASIVDSYER-----------------RNEGAA-RVIGTLLGTVDKHSV 129
Query: 67 EIFNSFELLYDPSTH--SLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKA 124
E+ N F + ++ S ++D F + EL+KKV P+ ILGWY+TG D E + IH+
Sbjct: 130 EVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEY 189
Query: 125 LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIP----QLIFVRSSYTIETVEA 180
+P+++ ++ S+ + + ++ + + G+P ++F + +
Sbjct: 190 YSREAPNPIHLTVDTSLQNGRMSI-----KAYVSTLMGVPGRTMGVMFTPLTVKYAYYDT 244
Query: 181 ERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCEN 240
ERI VD + +K + L++ L + A + + + Y + G++ +N
Sbjct: 245 ERIGVDLI--MKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADN 302
Query: 241 SLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 290
++ R + SL+ ++P I + F+ ND L++ YLA T +NE
Sbjct: 303 TVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNE 352
>sp|Q9DCH4|EIF3F_MOUSE Eukaryotic translation initiation factor 3 subunit F OS=Mus
musculus GN=Eif3f PE=1 SV=2
Length = 361
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 132/290 (45%), Gaps = 31/290 (10%)
Query: 7 SGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTV 66
G +LHP+++ +I D Y R N GA RV G ++G +V
Sbjct: 92 GGRVVRLHPVILASIVDSYER-----------------RNEGAA-RVIGTLLGTVDKHSV 133
Query: 67 EIFNSFELLYDPSTH--SLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKA 124
E+ N F + ++ S ++D F + EL+KKV P+ ILGWY+TG D E + IH+
Sbjct: 134 EVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEY 193
Query: 125 LMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIP----QLIFVRSSYTIETVEA 180
+P+++ ++ + + + ++ + + G+P ++F + +
Sbjct: 194 YSREAPNPIHLTVDTGLQHGRMSI-----KAYVSTLMGVPGRTMGVMFTPLTVKYAYYDT 248
Query: 181 ERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCEN 240
ERI VD + +K + L++ L + A + + + Y + G++ +N
Sbjct: 249 ERIGVDLI--MKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADN 306
Query: 241 SLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 290
++ R + SL+ ++P I + F+ ND L++ YLA T +NE
Sbjct: 307 TVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNE 356
>sp|P26270|PSD7_DROME 26S proteasome non-ATPase regulatory subunit 7 OS=Drosophila
melanogaster GN=Mov34 PE=1 SV=6
Length = 338
Score = 87.8 bits (216), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 79/310 (25%), Positives = 143/310 (46%), Gaps = 47/310 (15%)
Query: 13 LHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTV-EIFNS 71
+HPLV++++ DH+ R+ G Q RV G ++G R + V ++ NS
Sbjct: 13 VHPLVLLSVVDHFNRM----------------GKIGNQKRVVGVLLGCWRSKGVLDVSNS 56
Query: 72 FELLYD-----PSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALM 126
F + +D S LD +LE ++KKV ++GWY TG ++D+ I++ +
Sbjct: 57 FAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPKLHQNDIAINELVR 116
Query: 127 DINESPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIPQLIFVRSSYTIETVEAE--- 181
+ V V+++ P LP + S E+H +G P +S T E V +E
Sbjct: 117 RYCPNSVLVIIDAK--PKDLGLPTEAYISVEEVH-DDGSP------TSKTFEHVPSEIGA 167
Query: 182 -RISVDHVAHL----KPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEI 236
V HL K + GS + ++ L G+ K LN+++R + YL + ++
Sbjct: 168 EEAEEVGVEHLLRDIKDTTVGSLSQKITNQLMGL----KGLNAQLRDIKQYLQRVGDSKM 223
Query: 237 PCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFN 296
P + ++ Q+ + LP I +++F ++ ND +L+ YLA ++ L++ N
Sbjct: 224 PINHQIVYQLQDIFNLLPDITNDQFTGTMYVKTNDQMLVVYLASMVRSIIALHNLIN--N 281
Query: 297 TAYDRHSRRG 306
+R + G
Sbjct: 282 KLANRDAEEG 291
>sp|Q54C49|EIF3F_DICDI Eukaryotic translation initiation factor 3 subunit F
OS=Dictyostelium discoideum GN=eif3f PE=3 SV=1
Length = 284
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 128/283 (45%), Gaps = 32/283 (11%)
Query: 7 SGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTV 66
S +T K+HP+VI NI DHY R N Q RV G ++G +
Sbjct: 11 SQVTVKVHPVVIFNILDHYIR------------------RNVGQDRVIGTLLGFNNDGVL 52
Query: 67 EIFNSFELLYDPSTH-SLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKAL 125
EI N F +++ + +++ + K +L+ K P I+GWY+TG+D E+ +HI+
Sbjct: 53 EIRNCFPVVHSETEQIAVEMEYQRKMLDLHLKSSPREPIIGWYATGNDINENSVHINNFY 112
Query: 126 MDI--NESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQ----LIFVRSSYTIETVE 179
D N +P+++ +++ + + I H + P+ F + I T E
Sbjct: 113 RDEMGNSTPIHL----TVDTGLTNDTMGIHAYMAHNLSLNPESSLGSYFSQLPLEILTFE 168
Query: 180 AERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCE 239
AE ++ +A K +T L + L + ++ L+ + + Y+ +++KGEI +
Sbjct: 169 AENAGLESIAQTKYDQ---QSTSLLSELESLQGSLTKLDEMLESITSYIESVEKGEIQGD 225
Query: 240 NSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFT 282
L R ++ ++ LP ++ D L+I YL+ T
Sbjct: 226 PRLGRFLAKTIQALPKANAQVMDKVINNSVKDLLMIVYLSSLT 268
>sp|O74440|RPN8_SCHPO 26S proteasome regulatory subunit rpn8 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpn8 PE=3 SV=1
Length = 324
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 138/301 (45%), Gaps = 41/301 (13%)
Query: 13 LHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSF 72
+HPLV+++ D Y R + G + RV G ++G G V + NS+
Sbjct: 19 VHPLVLLSAVDSYNR-----------------SAKGTKRRVVGILLGQNNGDVVNVANSY 61
Query: 73 ELLYD-----PSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMD 127
+ ++ S LD F+E E++KK+ + ++GWY TG + SD+ I+ L
Sbjct: 62 AIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKK 121
Query: 128 INESPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIPQLIFVRSSYTIETVEAERISV 185
+PV V+++ + P LP + + E+ FV +IE EAE I V
Sbjct: 122 YIPNPVLVIID--VKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGV 179
Query: 186 DHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQ 245
+H+ L+ + S T LA +T +++ L R+ + YL + G++P +++L +
Sbjct: 180 EHL--LRDTRDASVGT-LATRVTQQAQSLQGLGQRLTEIADYLRKVVDGQLPINHAILAE 236
Query: 246 VSSLLRRLP-----------AIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDK 294
+ S+ LP A+ESE Q F + ND L+ Y++ +++L+D
Sbjct: 237 LQSVFNLLPNIFSGPVVSEQALESEA-QRAFNVNSNDQLMSIYISSIVRAVIALHDLLDS 295
Query: 295 F 295
Sbjct: 296 L 296
>sp|Q8WZY4|RPN8_NEUCR 26S proteasome regulatory subunit rpn-8 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=rpn-8 PE=3 SV=1
Length = 352
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 133/299 (44%), Gaps = 40/299 (13%)
Query: 15 PLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFEL 74
PLV++++ DHY R +Q N S S RV G ++G G+ V + NSF +
Sbjct: 20 PLVLLSVVDHYNR--TQANKSKSK-------------RVVGVLLGQNDGKNVRVSNSFAV 64
Query: 75 LY-----DPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDIN 129
+ DPS LD ++E +++KKV ++GWY +G + SD+ I++
Sbjct: 65 PFEEDDKDPSVWFLDHNYVESMNDMFKKVNAREKLIGWYHSGPKLRASDLDINELFKRYT 124
Query: 130 ESPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIPQLIFVRSSYTIETVEAERISVDH 187
+P+ V+++ + P + +P + + E+ FV +T +EAE
Sbjct: 125 PNPLLVIVD--VQPKETGVPTDAYFAVDEIKDDGTTTSKTFV---HTPSIIEAEEAEEIG 179
Query: 188 VAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVS 247
V HL A L+ +T +++ L+ R+R + YL + G++P +++L +
Sbjct: 180 VEHLLRDIRDVAVGTLSTRITNQMRSLQGLHHRLRDIQAYLQKVLDGQLPVNHAILGNLQ 239
Query: 248 SLLRRLPAIESEK-------------FQDDFLMEYNDTLLIAYLAMFTNCASTMNELVD 293
+ LP + + K ++ ND L+ YL+ + ++L++
Sbjct: 240 DVFNLLPNLSTPKSGPGATGTNADSELNHAMSIKTNDQLMAIYLSSLIRAITAFHDLIE 298
>sp|Q5BB47|CSN6_EMENI COP9 signalosome complex subunit 6 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnF PE=1 SV=2
Length = 386
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 42/211 (19%)
Query: 4 SSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRG 63
SS SGL +LHPL ++ ISDH TR H++ + Q + G ++G G
Sbjct: 13 SSDSGLHIQLHPLALLTISDHITR------HAARSQ----------QGPIVGGLLGQHNG 56
Query: 64 RTVEIFNSFELLYD--PSTHS-LDRAFLEKKQELYKKV--FPHFYILGWYSTGSDAQESD 118
R + + + FE + + P+ + L + + + +K V P ++GW+ST + +
Sbjct: 57 REITVEHGFECVVEIGPNGEAQLPNEWFVDRVKQFKDVHKVPALDLIGWWSTAPPSGPTT 116
Query: 119 MH--IHKA-LMDINESPVYVLLNPS----INPAQKDLPVTIFES-----------ELHVI 160
H IH+ L + NES V++ +PS + +Q LP+TI+ES + +
Sbjct: 117 AHLPIHRQILQNHNESAVFLTFHPSQVQGASQSQGKLPLTIYESVYEGESVTENGKAMQV 176
Query: 161 EGIPQLIFVR---SSYTIETVEAERISVDHV 188
+G QL+ +R YTIET EAE I +D V
Sbjct: 177 DGEEQLLNIRFRELPYTIETGEAEMIGIDTV 207
>sp|Q6FMD8|RPN8_CANGA 26S proteasome regulatory subunit RPN8 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=RPN8 PE=3 SV=1
Length = 329
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/305 (21%), Positives = 126/305 (41%), Gaps = 49/305 (16%)
Query: 15 PLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFEL 74
PLV++++ DHY R N R G ++G + T+ + NSF L
Sbjct: 12 PLVLLSVLDHYERT-----------------NTPEGKRCVGVILGDSQTNTIRVTNSFAL 54
Query: 75 LYDPSTHS-----LDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDIN 129
++ + LD ++E E+ KK+ ++GWY +G + SD+ I++
Sbjct: 55 PFEEDEKNSDVWFLDHNYIESMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYT 114
Query: 130 ESPVYVLLNPSINPAQKD--LPVTIFESELHVIEG--IPQLIFVRSSYTIETVEAERISV 185
+ +L+ ++ Q+D LP + + V + + F+ T+E EAE I V
Sbjct: 115 QGNPLLLI---VDVKQQDVGLPTDAYMAVEQVKDDGTSTEKTFLHLPCTVEAEEAEEIGV 171
Query: 186 DHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQ 245
+H+ AA L+ LT ++K L ++ + YL + E+P +++L +
Sbjct: 172 EHLLR---DVRDQAAGGLSIRLTNQLKSLKGLQKKLNDIVIYLNKVINNELPVNHTILGK 228
Query: 246 VSSLLRRLPAI-----------------ESEKFQDDFLMEYNDTLLIAYLAMFTNCASTM 288
+ + LP + S Q ++ ND L++ Y+
Sbjct: 229 LQDVFNLLPNLGYNEETDVSATSNDMVTASNNLQRALTVKTNDELMVIYITNLVRAIIAF 288
Query: 289 NELVD 293
++L++
Sbjct: 289 DDLIE 293
>sp|P68356|CSN6A_BRAOL COP9 signalosome complex subunit 6a (Fragments) OS=Brassica
oleracea GN=CSN6A PE=1 SV=1
Length = 66
Score = 67.4 bits (163), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/38 (78%), Positives = 35/38 (92%)
Query: 62 RGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVF 99
+GRTVEIFNSFELL DP+T +LDR+FLEKKQELYKK+
Sbjct: 1 KGRTVEIFNSFELLLDPTTQTLDRSFLEKKQELYKKML 38
Score = 32.7 bits (73), Expect = 3.4, Method: Composition-based stats.
Identities = 13/18 (72%), Positives = 16/18 (88%)
Query: 291 LVDKFNTAYDRHSRRGGR 308
L KFNTAY+R++RRGGR
Sbjct: 49 LAAKFNTAYERNTRRGGR 66
>sp|A8PZS4|EIF3F_MALGO Eukaryotic translation initiation factor 3 subunit F OS=Malassezia
globosa (strain ATCC MYA-4612 / CBS 7966) GN=MGL_1945
PE=3 SV=1
Length = 300
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/293 (21%), Positives = 126/293 (43%), Gaps = 34/293 (11%)
Query: 5 SSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGR 64
S S K+HP+ + +I DHY R + +QPRV G ++G +
Sbjct: 27 SRSITAVKVHPVALFSILDHYLR------------------RDVSQPRVIGTLLGTRSES 68
Query: 65 TVEIFNSFELLY----DPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMH 120
VE+ N+F + + DP LD + +L+ +V P +LGWYST ++ +
Sbjct: 69 EVEVRNAFAVPHGESQDPWQIHLDAEHHRRMLDLHLRVRPDEVVLGWYSTNTELNSNSAL 128
Query: 121 I--HKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQ-LIFVRSSYTIET 177
I H + +++ LN ++ L V + S L P+ F+ +
Sbjct: 129 IQDHYSRETAPHQAIHLTLNTNVADEANGLGVQCYVSALLGAMAKPEDCAFLSLPTHLLM 188
Query: 178 VEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIP 237
E+ ++ H+A KP Q L + ++++ + +++ + Y+ + GE+
Sbjct: 189 STPEQTALRHLAAPKP--------QNITDLDALKASLEDVQAKLDRVLTYVRRVLAGEVE 240
Query: 238 CENSLLRQVSSLLRRLPA-IESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMN 289
+ ++ R +S + +PA ++ + F D +++YL+ + + M+
Sbjct: 241 GDKAVGRYLSDTIGVVPAGLDESLLESLFQSHLQDVFMVSYLSKLVSAQAEMS 293
>sp|Q7S8C8|CSN6_NEUCR COP9 signalosome complex subunit 6 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-6 PE=1 SV=1
Length = 497
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 96/226 (42%), Gaps = 52/226 (23%)
Query: 5 SSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGR 64
S S L LHPL I+ ISD+ TR + G + + G +IG Q GR
Sbjct: 15 SDSSLQVALHPLPILEISDYITRSYLR----------------GYKGAIVGALIGQQNGR 58
Query: 65 TVEIFNSFELLYD--PSTHSLDRAFLEKKQELYKKVFPHFYI--LGWYSTGSDAQESDMH 120
+ I +SF + + + +D + + + K V + +GWY+ + +D H
Sbjct: 59 QITIEHSFSVKTEHTGQNYKVDSEWFTARLDQMKAVHKDRALDFVGWYTLVPKSGPTDAH 118
Query: 121 --IHKALMDINESPVYVL--LNPSINPAQKD-LPVTIFESELHVIEGIP----------- 164
IH NES V + ++ +NP D LP+TI+ES L +++G
Sbjct: 119 LPIHSYFYSQNESAVLLGFHIHEILNPVAGDPLPLTIYESNLEIVDGTEASTVEVEGEDR 178
Query: 165 -----------QLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSA 199
+ F YT ET EAE I+++ V +GGSA
Sbjct: 179 EMKDVTAEPSRSIKFRELPYTTETGEAEMIALEFV-----REGGSA 219
>sp|Q08723|RPN8_YEAST 26S proteasome regulatory subunit RPN8 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN8 PE=1 SV=3
Length = 338
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/319 (20%), Positives = 125/319 (39%), Gaps = 77/319 (24%)
Query: 15 PLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFEL 74
PLV+++ DHY R +++ N R G ++G T+ + NSF L
Sbjct: 12 PLVLLSALDHYERTQTKENK-----------------RCVGVILGDANSSTIRVTNSFAL 54
Query: 75 LYDPSTHS-----LDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDIN 129
++ + LD ++E E+ KK+ ++GWY +G + SD+ I++
Sbjct: 55 PFEEDEKNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKK-- 112
Query: 130 ESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVDH-- 187
Y NP + L V + + + G+P +V IE V+ + S +
Sbjct: 113 ----YTQNNPLL------LIVDVKQQGV----GLPTDAYV----AIEQVKDDGTSTEKTF 154
Query: 188 ----------------VAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAM 231
V HL AA L+ LT ++K L S+++ + YL +
Sbjct: 155 LHLPCTIEAEEAEEIGVEHLLRDVRDQAAGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKV 214
Query: 232 QKGEIPCENSLLRQVSSLLRRLPAIE-----------------SEKFQDDFLMEYNDTLL 274
E+P +++L ++ + LP + S Q ++ ND L+
Sbjct: 215 INKELPINHTILGKLQDVFNLLPNLGTPDDDEIDVENHDRINISNNLQKALTVKTNDELM 274
Query: 275 IAYLAMFTNCASTMNELVD 293
+ Y++ ++L++
Sbjct: 275 VIYISNLVRSIIAFDDLIE 293
>sp|Q75F44|RPN8_ASHGO 26S proteasome regulatory subunit RPN8 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPN8 PE=3 SV=1
Length = 326
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/303 (21%), Positives = 124/303 (40%), Gaps = 45/303 (14%)
Query: 15 PLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFEL 74
PLV++++ DHY R+ + N R G ++G G T+++ NSF L
Sbjct: 12 PLVLLSVLDHYKRMNTPDNK-----------------RCVGVLLGDNSGSTIKVTNSFAL 54
Query: 75 LYD-----PSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDIN 129
++ P LD ++E ++ KK+ ++GWY +G + SD+ I+
Sbjct: 55 PFEEDEKNPDVWFLDHNYIENMNDMCKKINAKEKMIGWYHSGPKLRSSDLKINGLFKKYT 114
Query: 130 ESPVYVLLNPSINPAQKDLPVTIFES--ELHVIEGIPQLIFVRSSYTIETVEAERISVDH 187
+ +L+ + LP + + E+ + FV IE EAE I V+H
Sbjct: 115 QGNSLLLI-VDVKQQGVGLPTDAYMAIEEVKDDGSSTERTFVHLPTAIEAEEAEEIGVEH 173
Query: 188 VAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVS 247
+ AA L+ LT +++ L ++R + YL + G++P + +L ++
Sbjct: 174 LLR---DVRDQAAGNLSLRLTNQLKSLQGLQRKLRDIVAYLDKVNSGQLPANHIILGKLQ 230
Query: 248 SLLRRLPAI-----------------ESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 290
+ LP + S Q ++ ND L++ Y++ +
Sbjct: 231 DVFNLLPNLGSPDEEAPATKKDDVLASSNTLQKALTVKTNDELMVIYISNLMRAIIAFDN 290
Query: 291 LVD 293
L++
Sbjct: 291 LIE 293
>sp|O43060|EIF3F_SCHPO Eukaryotic translation initiation factor 3 subunit F
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=eif3f PE=1 SV=1
Length = 302
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 130/309 (42%), Gaps = 39/309 (12%)
Query: 3 SSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGI-- 60
SS SS L + P V+ +I DH TR KS+ N RV G ++G
Sbjct: 15 SSRSSPLNIVIEPAVLFSILDHSTR-KSENNQ-----------------RVIGTLLGTRS 56
Query: 61 QRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYK---KVFPHFYILGWYSTGSDAQES 117
+ GR +EI + F + ++ S+ ++ +E + +Y K P ++GWY+T D
Sbjct: 57 EDGREIEIKSCFAVPHNESSEQVE-VEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAF 115
Query: 118 D---MHIHKALMDINESPVYVLLNPSIN-PAQKDL--PVTI---FESELHVIEGIP-QLI 167
+++ + + +P+ +P ++ D+ P+ I S + + E +
Sbjct: 116 SALIQNLYASPAEPGTAPLGTYPHPCVHLTVNTDVSSPLAIKTYVSSPVGITERLADSCA 175
Query: 168 FVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHY 227
FV + +TI EA R + VA P + S L L + + L S I + Y
Sbjct: 176 FVPTPFTIRDDEAVRSGLKAVA--APKNDPSRLASLFTDLQQLRRSTLELLSMIERVSDY 233
Query: 228 LVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCAST 287
+ + G P ++ R + +P +E + F+ F D L++ YLA N T
Sbjct: 234 VQNVIDGSSPANVAVGRYLMKCFSLIPCVEGQDFEKIFSSHLQDVLVVVYLA---NTLRT 290
Query: 288 MNELVDKFN 296
++ + N
Sbjct: 291 QVDIASRLN 299
>sp|B4HBD2|EI3F2_DROPE Eukaryotic translation initiation factor 3 subunit F-2
OS=Drosophila persimilis GN=eIF3-S5-2 PE=3 SV=1
Length = 288
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 122/278 (43%), Gaps = 43/278 (15%)
Query: 13 LHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRT--VEIFN 70
LHPLV+ I D Y R + P V G ++GI G+T +EI N
Sbjct: 14 LHPLVLFQIIDAYERRAKDV------------------PEVLGTLLGIVAGKTGRIEITN 55
Query: 71 SFELLY----DPSTH-SLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKAL 125
F +++ D + H LD + EL + +P ++GW+STG + + +H+
Sbjct: 56 CFSVVHRMHGDNNCHIDLDLKYDNDMLELAQIAYPQEKVVGWFSTGKAVSAAAVELHEYY 115
Query: 126 MDINES--PVYVLLNPSINPAQKDLPVTIFESELHVIEGIP----QLIFVRSSYTIETVE 179
S P+++L++ S+ + + IF + V G+P L+F I
Sbjct: 116 ERQCHSGQPLHLLMDTSLRGQRMN--TRIFCA---VATGVPGGTKGLMFSLLPMDIYFGS 170
Query: 180 AERISVDHVAH---LKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEI 236
+ +++ H+ L P + G +L L + A K + ++ ++ Y+ + +
Sbjct: 171 PDIVAMRHMGRQCALPPKEAG----RLLPELEQVVDATKDIQQKLDLVLRYINDILNRKR 226
Query: 237 PCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLL 274
+N++ R + +L +P +E+E+F+ F D L+
Sbjct: 227 RPDNTVGRALHDVLTSVPMVEAERFRHMFNTNMRDLLM 264
>sp|A1D3E1|EIF3F_NEOFI Eukaryotic translation initiation factor 3 subunit F OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=NFIA_016300 PE=3 SV=1
Length = 345
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 125/307 (40%), Gaps = 34/307 (11%)
Query: 2 ASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGI- 60
++ +++ L + P I +I DH R N Q RV G ++G
Sbjct: 21 SAPTTAPLNVVIQPQAIFSILDHSLR------------------RNADQERVIGTLLGTR 62
Query: 61 -QRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQ--ELYKKVFPHFYILGWYSTGSDAQES 117
+ G VEI ++F + + +T ++ +KQ L+ K P ++GWY+T S+
Sbjct: 63 SEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTF 122
Query: 118 DMHI---HKALMDINESPVYVLLNPSINPAQKDLPVTIFESE---LHVIEGIPQLIFVRS 171
I + D V L S P KD+ + S + F+
Sbjct: 123 SALIQNFYSGQGDGTWPHPAVHLTVSTEPG-KDIETRAYISAPVGVTAERAADSAAFIPV 181
Query: 172 SYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAM 231
Y I EAE+ ++ +A K D S AT + + + AI+ + I + Y+ ++
Sbjct: 182 PYEIRYGEAEKSGLETIASAK--DAESRATNIFTDIEALERAIEEVLGMIDRVSRYVESV 239
Query: 232 QKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNEL 291
E P +L + + + L P +E + DF D L+++YLA N T EL
Sbjct: 240 IDEEAPASTALGQFLLNALALAPKVEPADIERDFNNHIQDVLVVSYLA---NTIRTQMEL 296
Query: 292 VDKFNTA 298
++ TA
Sbjct: 297 SNRLATA 303
>sp|O04202|EIF3F_ARATH Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis
thaliana GN=TIF3F1 PE=2 SV=1
Length = 293
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 120/267 (44%), Gaps = 33/267 (12%)
Query: 2 ASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIG-I 60
AS+++S LT ++HPLVI N+ D + R + RV G ++G I
Sbjct: 19 ASATTSVLTARIHPLVIFNVCDCFVRRPD------------------SAERVIGTLLGSI 60
Query: 61 QRGRTVEIFNSFELLYDPSTH--SLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESD 118
TV+I NS+ + ++ S+ ++D + + KV I+GWYSTG+
Sbjct: 61 LPDGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGS 120
Query: 119 MHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLI--FVRSSYTIE 176
IH +P+++ ++ + + + S L + G QL+ F +
Sbjct: 121 SLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFV-SSNLSL--GDRQLVAHFQEIPVDLR 177
Query: 177 TVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEI 236
V+AER+ D + ++ +L L G+ ++ L + I ++ Y+ ++ G+I
Sbjct: 178 MVDAERVGFDVLK-------ATSVDKLPNDLEGMELTMERLLTLINDVYKYVDSVVGGQI 230
Query: 237 PCENSLLRQVSSLLRRLPAIESEKFQD 263
+N++ R ++ + LP + + F +
Sbjct: 231 APDNNIGRFIADAVASLPKLPPQVFDN 257
>sp|Q4WTH0|EIF3F_ASPFU Eukaryotic translation initiation factor 3 subunit F OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=AFUA_1G09330 PE=3 SV=1
Length = 345
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 125/307 (40%), Gaps = 34/307 (11%)
Query: 2 ASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGI- 60
++ +++ L + P I +I DH R N Q RV G ++G
Sbjct: 21 SAPTTAPLNVVIQPQAIFSILDHSLR------------------RNADQERVIGTLLGTR 62
Query: 61 -QRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQ--ELYKKVFPHFYILGWYSTGSDAQES 117
+ G VEI ++F + + +T ++ +KQ L+ K P ++GWY+T S+
Sbjct: 63 SEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTF 122
Query: 118 DMHI---HKALMDINESPVYVLLNPSINPAQKDLPVTIFESE---LHVIEGIPQLIFVRS 171
I + D V L S P KD+ + S + F+
Sbjct: 123 SALIQNFYSGQGDGTWPHPAVHLTVSTEPG-KDIETRAYISAPVGVTAERAADSAAFIPV 181
Query: 172 SYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAM 231
Y I EAE+ ++ +A K D S AT + + + AI+ + I + Y+ ++
Sbjct: 182 PYEIRYGEAEKSGLEAIASAK--DAESRATNIFTDIEALERAIEEVLGMIDRVSRYVESV 239
Query: 232 QKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNEL 291
E P +L + + + L P +E + DF D L+++YLA N T EL
Sbjct: 240 IDEEAPASTALGQFLLNALALAPKVEPADIERDFNNHIQDVLVVSYLA---NTIRTQMEL 296
Query: 292 VDKFNTA 298
++ TA
Sbjct: 297 SNRLATA 303
>sp|B0XQ55|EIF3F_ASPFC Eukaryotic translation initiation factor 3 subunit F OS=Neosartorya
fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
GN=AFUB_008750 PE=3 SV=1
Length = 345
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 125/307 (40%), Gaps = 34/307 (11%)
Query: 2 ASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGI- 60
++ +++ L + P I +I DH R N Q RV G ++G
Sbjct: 21 SAPTTAPLNVVIQPQAIFSILDHSLR------------------RNADQERVIGTLLGTR 62
Query: 61 -QRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQ--ELYKKVFPHFYILGWYSTGSDAQES 117
+ G VEI ++F + + +T ++ +KQ L+ K P ++GWY+T S+
Sbjct: 63 SEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTF 122
Query: 118 DMHI---HKALMDINESPVYVLLNPSINPAQKDLPVTIFESE---LHVIEGIPQLIFVRS 171
I + D V L S P KD+ + S + F+
Sbjct: 123 SALIQNFYSGQGDGTWPHPAVHLTVSTEPG-KDIETRAYISAPVGVTAERAADSAAFIPV 181
Query: 172 SYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAM 231
Y I EAE+ ++ +A K D S AT + + + AI+ + I + Y+ ++
Sbjct: 182 PYEIRYGEAEKSGLEAIASAK--DAESRATNIFTDIEALERAIEEVLGMIDRVSRYVESV 239
Query: 232 QKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNEL 291
E P +L + + + L P +E + DF D L+++YLA N T EL
Sbjct: 240 IDEEAPASTALGQFLLNALALAPKVEPADIERDFNNHIQDVLVVSYLA---NTIRTQMEL 296
Query: 292 VDKFNTA 298
++ TA
Sbjct: 297 SNRLATA 303
>sp|B5E1N0|EI3F2_DROPS Eukaryotic translation initiation factor 3 subunit F-2
OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-2
PE=3 SV=1
Length = 288
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 120/275 (43%), Gaps = 37/275 (13%)
Query: 13 LHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRT--VEIFN 70
LHPLV+ I D Y R + P V G ++G G+T +EI N
Sbjct: 14 LHPLVLFQIIDAYERRAKDV------------------PEVLGTLLGTVAGKTGRIEITN 55
Query: 71 SFELLY----DPSTH-SLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKAL 125
F +++ D + H LD + EL + +P +LGW+STG + + +H+
Sbjct: 56 CFSVVHRMHGDNNCHIDLDLKYDNDMLELAQIAYPQEKVLGWFSTGKSVSAAAVELHEYY 115
Query: 126 MDI--NESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIP----QLIFVRSSYTIETVE 179
N P+++L++ S+ + + IF + V G+P L+F I
Sbjct: 116 ERQCHNGQPLHLLMDTSLRGQRMN--TRIFCA---VATGVPGGTKGLMFSLLPMDIYFGS 170
Query: 180 AERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCE 239
+ +++ H+ + + A +L L + A K + ++ ++ Y+ + + +
Sbjct: 171 PDIVAMRHMGR-QCAQPTKDAGRLLPELEQVVDATKDIQQKLDLVLRYINDILNRKRRPD 229
Query: 240 NSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLL 274
N++ R + +L +P +E+E+F+ F D L+
Sbjct: 230 NTVGRALHDVLTSVPMVEAERFRHMFNTNMRDLLM 264
>sp|Q6C4H1|EIF3F_YARLI Eukaryotic translation initiation factor 3 subunit F OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=YALI0E26851g
PE=3 SV=1
Length = 294
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 116/257 (45%), Gaps = 14/257 (5%)
Query: 50 QPRVYGCVIGI--QRGRTVEIFNSFELLYDPSTH--SLDRAFLEKKQELYKKVFPHFYIL 105
Q +V G ++GI + G VE+ N++ + + S ++D + L++K FP I+
Sbjct: 41 QSKVIGTLVGIRSEDGSEVEVRNAYAVPHSESEQEMTIDLEYNPTMLALHRKAFPKEVIV 100
Query: 106 GWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHV--IEGI 163
GWY+T S+ IH ++ +P L + N A LP T S + + +
Sbjct: 101 GWYATSSELNTFSGLIHDYYTQLDGTPAIHLTVEAANLADTLLPRTYVASAVGIDPSKNS 160
Query: 164 PQLIFVRSSYTIE-TVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIR 222
+FV S ++ A+R +++ ++ + S S L + L + +++ + +
Sbjct: 161 GNCVFVPISNEVKFNDSADRAALEAISSARESPERS--INLTSDLANLENSLTQVLDMLE 218
Query: 223 VLHHYLVAMQKGEIPCENS--LLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAM 280
+ Y+ + GE E + + +Q+ S L P+++++ + F D L++ YLA
Sbjct: 219 RVQTYVARVISGEESSEKAQQVGKQLLSTLTLTPSLDAQNLEALFNSHLQDVLMVVYLA- 277
Query: 281 FTNCASTMNELVDKFNT 297
N T +L K T
Sbjct: 278 --NTVKTQLQLSAKLTT 292
>sp|Q1DRC9|EIF3F_COCIM Eukaryotic translation initiation factor 3 subunit F
OS=Coccidioides immitis (strain RS) GN=CIMG_07134 PE=3
SV=1
Length = 348
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 123/310 (39%), Gaps = 42/310 (13%)
Query: 3 SSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGI-- 60
+ S++ L + P I +I DH R N Q RV G ++G
Sbjct: 22 APSTAPLNVVIQPQAIFSILDHSLR------------------RNADQERVIGTLLGTRS 63
Query: 61 QRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQ--ELYKKVFPHFYILGWYSTGSDAQESD 118
+ G VEI F + + +T ++ +KQ L+ K P ++GWY+T S+
Sbjct: 64 EDGTEVEIRTCFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYAT-----SSE 118
Query: 119 MHIHKALM--------DINESPVYVLLNPSINPAQKDLPVTIFESELHVI--EGIPQLIF 168
++ AL+ D V L S P + T + + V F
Sbjct: 119 LNTFSALIQNFYGGQGDGTWPHPAVHLTVSTEPGKDIETRTYISAPVGVTAERAADSAAF 178
Query: 169 VRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYL 228
+ Y I EAER ++ +A + D A+ L + + +I+ + I + Y+
Sbjct: 179 IPVPYEIRYSEAERNGLEAIAQAR--DAEDRASSLFTDIETLEKSIEEVLGMIDRVSKYV 236
Query: 229 VAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTM 288
++ E P +L + + + L P ++ + DF D L+++YLA N T
Sbjct: 237 ESVIDEEAPASTALGQFLLNALALAPKVDPADIESDFNKHIQDVLVVSYLA---NTIRTQ 293
Query: 289 NELVDKFNTA 298
EL ++ TA
Sbjct: 294 MELSNRLATA 303
>sp|Q1HR47|EIF3F_AEDAE Eukaryotic translation initiation factor 3 subunit F OS=Aedes
aegypti GN=eIF3-S5 PE=2 SV=1
Length = 287
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 61/289 (21%), Positives = 122/289 (42%), Gaps = 28/289 (9%)
Query: 9 LTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEI 68
LT ++HP+V+ I D Y R N RV G ++G VE+
Sbjct: 10 LTVRVHPVVLFQIVDAYER------------------RNADSERVIGTLLGSVDKGVVEV 51
Query: 69 FNSFELLYDPSTHSLDRAFLEKKQELY---KKVFPHFYILGWYSTGSDAQESDMHIHKAL 125
N F + + ++ A L +LY ++V P I+GW++TG + IH+
Sbjct: 52 TNCFCVPHKEHADQVE-AELGYASDLYDLNRRVNPSENIVGWWATGQEVTNHSSVIHEYY 110
Query: 126 MDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISV 185
+P+++ L+ S++ A+ + + S L V G +F + I + E E + +
Sbjct: 111 ARECNNPIHLTLDTSLSAARMGIKAYVCVS-LGVPGGKTGCMFTPINVEISSYEPEVVGL 169
Query: 186 DHVAHLKPSDGGSAATQLAAHLTGI----HSAIKMLNSRIRVLHHYLVAMQKGEIPCENS 241
+ ++ + + + + ++ K+L VL++ + + + P +NS
Sbjct: 170 QLCSKTIGVQQNASRPRTVSPMLDLAQITEASDKLLTLLGEVLNYVEDVLAEKQQP-DNS 228
Query: 242 LLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 290
+ R + L+ +P + S++F F D L++ L+ +NE
Sbjct: 229 VGRALLDLIHSVPNMTSDQFAQMFNSNVKDLLMVVTLSQLIKTQLQLNE 277
>sp|B3MJ61|EI3F2_DROAN Eukaryotic translation initiation factor 3 subunit F-2
OS=Drosophila ananassae GN=eIF3-S5-2 PE=3 SV=1
Length = 285
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/284 (20%), Positives = 115/284 (40%), Gaps = 25/284 (8%)
Query: 13 LHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSF 72
L PLV+ I D Y R AT ++ G ++G G+ + I N F
Sbjct: 13 LQPLVLFQIIDSYER------RPKDAT------------QIIGTLLGRSNGKEITITNCF 54
Query: 73 ELLY----DPSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHK--ALM 126
+L+ D + LD + EL + +P +LGW+STG S + +H +
Sbjct: 55 TVLHKEHPDSARIDLDLGYANDMLELNQLTYPQEKVLGWFSTGKSVSRSALLLHDYYSRE 114
Query: 127 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 186
+ P+++L++ ++ Q+ E+ V G L+F + + AE +++
Sbjct: 115 CSDGQPLHLLVDATLK-GQRLSTRLYCGVEMGVPGGTKGLMFSLVPLEMASDSAEMVALR 173
Query: 187 HVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQV 246
+ G ++ L + A + L R+ ++ Y+ + + +N + R +
Sbjct: 174 LMQKQNLQPGAKQVGRILPELVQVVEATRELQLRLDLVLRYINDVLARKRRPDNVVGRAL 233
Query: 247 SSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 290
L +P ++++ F+ F D L+ L+ ++E
Sbjct: 234 HDTLTSVPLVDTDNFKLMFNANVRDMLMAITLSTMIKTQLQISE 277
>sp|A1CQH7|EIF3F_ASPCL Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=ACLA_026150 PE=3 SV=1
Length = 345
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/309 (21%), Positives = 125/309 (40%), Gaps = 38/309 (12%)
Query: 2 ASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGI- 60
++ +++ L + P I +I DH R N Q RV G ++G
Sbjct: 21 SAPTTAPLNVVIQPQAIFSILDHSLR------------------RNADQERVIGTLLGTR 62
Query: 61 -QRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQ--ELYKKVFPHFYILGWYSTGSDAQES 117
+ G VEI ++F + + +T ++ +KQ L+ K P ++GWY+T S+
Sbjct: 63 SEDGTEVEIRSTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTF 122
Query: 118 DMHIHKALMDINESPVYVLLNPSI-----NPAQKDLPVTIFESE---LHVIEGIPQLIFV 169
I + +P++ A KD+ + S + F+
Sbjct: 123 SALIQNFYSGQGDG---TWPHPAVHLTVSTEAGKDIETRAYISAPVGVTAERAADSAAFI 179
Query: 170 RSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLV 229
Y I EAE+ ++ ++ + D + AT + + + AI+ + I + Y+
Sbjct: 180 PVPYEIRYGEAEKSGLEAISSAR--DAENRATNIFTDIEALERAIEDVLGMIDRVSRYVE 237
Query: 230 AMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMN 289
++ E P +L + + + L P +E + DF D L+++YLA N T
Sbjct: 238 SVIDEEAPASTALGQFLLNTLALAPKVEPADIERDFNNHIQDVLVVSYLA---NTIRTQM 294
Query: 290 ELVDKFNTA 298
EL ++ TA
Sbjct: 295 ELSNRLATA 303
>sp|B3M123|EI3F1_DROAN Eukaryotic translation initiation factor 3 subunit F-1
OS=Drosophila ananassae GN=eIF3-S5-1 PE=3 SV=1
Length = 280
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/293 (20%), Positives = 121/293 (41%), Gaps = 29/293 (9%)
Query: 5 SSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGR 64
S+ LT ++HP+V+ + D Y R N RV G ++G
Sbjct: 2 SALNLTVRVHPVVLFQVVDAYER------------------RNADSHRVIGTLLGSVDKG 43
Query: 65 TVEIFNSFELLYDPSTHSLDR--AFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIH 122
VE+ N F + + ++ ++ +L +KV P+ ++GW++TG+D IH
Sbjct: 44 VVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNPNESVVGWWATGNDVTNHSSVIH 103
Query: 123 KALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAER 182
+ +PV++ ++ S+ + L + +L V G +F + + E E
Sbjct: 104 EYYARECNNPVHLTVDTSLQGGRMGLRAYVC-IQLGVPGGKSGCMFTPIPVELTSYEPET 162
Query: 183 ISVDHVAHLKPSDGGSAATQLAA-----HLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIP 237
+ L+ + G S A + L I A + L + ++ Y+ + ++
Sbjct: 163 FG---LKLLQKTVGVSPAHRPKTVPPMLDLAQISEASQKLQQLLDLILKYVDDVIAHKVT 219
Query: 238 CENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 290
+N++ RQ+ L+ +P + E+F F + LL+ L+ +NE
Sbjct: 220 PDNAVGRQLLDLIHSVPHMTHEQFTQMFNANVRNLLLVITLSQLIKTQLQLNE 272
>sp|Q2UPM0|EIF3F_ASPOR Eukaryotic translation initiation factor 3 subunit F OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=AO090005001590
PE=3 SV=1
Length = 345
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 122/307 (39%), Gaps = 34/307 (11%)
Query: 2 ASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGI- 60
++ +++ L +HP + +I DH R N Q RV G ++G
Sbjct: 21 SAPTTAPLNVVIHPQALFSILDHSLR------------------RNADQERVIGTLLGTR 62
Query: 61 -QRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQ--ELYKKVFPHFYILGWYSTGSDAQES 117
+ G VEI +F + + +T ++ +KQ L+ K P ++GWY+T S+
Sbjct: 63 SEDGTEVEIRTTFAVGHTETTDQVEVDMEYQKQMLALHLKANPKEVLVGWYATSSELNTF 122
Query: 118 DMHIHKALMDINESPV---YVLLNPSINPAQKDLPVTIFESE---LHVIEGIPQLIFVRS 171
I + V L S P KD+ + S + F+
Sbjct: 123 SALIQNFYSGQGDGTFPHPAVHLTVSTEPG-KDVETRAYISAPVGVTAERAADSAAFIPV 181
Query: 172 SYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAM 231
Y I E E+ ++ +A + D S A + + + A++ + I + Y+ ++
Sbjct: 182 PYEIRYGETEKSGLESIAAAR--DVESRAANIFTDIEALERAVEEVLGMIDRVSKYVESV 239
Query: 232 QKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNEL 291
E P +L + + + L P +E + DF D L+++YLA N T EL
Sbjct: 240 IDEEAPASTALGQFLLNALALAPKVEPADIERDFNNHIQDVLVVSYLA---NTIRTQMEL 296
Query: 292 VDKFNTA 298
++ TA
Sbjct: 297 SNRLATA 303
>sp|Q7QD36|EIF3F_ANOGA Eukaryotic translation initiation factor 3 subunit F OS=Anopheles
gambiae GN=eIF3-S5 PE=3 SV=3
Length = 287
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 118/290 (40%), Gaps = 30/290 (10%)
Query: 9 LTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEI 68
LT ++HP+V+ I D Y R N RV G ++G VE+
Sbjct: 10 LTVRVHPVVLFQIVDAYER------------------RNADSERVIGTLLGSVDKGVVEV 51
Query: 69 FNSFELLYDPSTHSLDR--AFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALM 126
N F L + T ++ + EL ++V I+GW++TG + IH+
Sbjct: 52 TNCFCLPHKEHTDQVEAELGYASDLYELNQRVNASENIVGWWATGQEVTNHSSVIHEYYA 111
Query: 127 DINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISVD 186
+PV++ L+ S+ A+ + + S L V G +F + + + E E + +
Sbjct: 112 RECTNPVHLTLDTSLTGARMGIKAYVCVS-LGVPGGKSGCMFTPINVEVTSYEPEIVGLQ 170
Query: 187 HV-----AHLKPSDGGSAATQL-AAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCEN 240
PS + + L A +T ++ K+L VL + + + + P EN
Sbjct: 171 LCMKTIGVQSNPSRPRTVSPMLDLAQVT--DASDKLLALLSDVLAYVEDVLSEKQQP-EN 227
Query: 241 SLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 290
++ R + L+ +P + ++F F D L++ L+ +NE
Sbjct: 228 TVGRALLDLIHSVPNMTGDQFAQMFNSNVKDLLMVVTLSQLIKTQLQLNE 277
>sp|B0X2G0|EIF3F_CULQU Eukaryotic translation initiation factor 3 subunit F OS=Culex
quinquefasciatus GN=eIF3-S5 PE=3 SV=1
Length = 287
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 118/289 (40%), Gaps = 28/289 (9%)
Query: 9 LTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEI 68
LT ++HP+V+ I D Y R N RV G ++G VE+
Sbjct: 10 LTVRVHPVVLFQIVDAYER------------------RNADSERVIGTLLGSVEKGIVEV 51
Query: 69 FNSFELLYDPSTHSLDRAFLEKKQELY---KKVFPHFYILGWYSTGSDAQESDMHIHKAL 125
N F + + ++ A L +LY ++V P I+GW++TG + IH+
Sbjct: 52 TNCFCVPHKEHADQVE-AELGYASDLYDLNRRVNPSENIVGWWATGQEVTNHSSVIHEYY 110
Query: 126 MDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGIPQLIFVRSSYTIETVEAERISV 185
+P+++ L+ S+ A+ + + S L V G +F + + + E E + +
Sbjct: 111 ARECNNPIHLTLDTSLTAARMGIKAYVCVS-LGVPGGKTGCMFTPINVEVTSYEPEVVGL 169
Query: 186 DHVAHLKPSDGGSAATQLAA---HLTGIHSAIKMLNSRI-RVLHHYLVAMQKGEIPCENS 241
A A + + L + A L + + VL++ + + + P +N
Sbjct: 170 SLCAKTIGVQSNPARPRTVSPMLDLAQVSEASGKLQTLLGEVLNYVEDVLAEKQQP-DNF 228
Query: 242 LLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNE 290
+ R + L+ +P ++ E+F F D L++ L+ +NE
Sbjct: 229 VGRALLDLIHSVPNMKHEEFAKMFNSNVKDLLMVVTLSQLIKTQLQLNE 277
>sp|B4II46|EI3F2_DROSE Eukaryotic translation initiation factor 3 subunit F-2
OS=Drosophila sechellia GN=eIF3-S5-2 PE=3 SV=1
Length = 285
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 122/296 (41%), Gaps = 30/296 (10%)
Query: 13 LHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSF 72
L PLV+ I D Y R DN +V G ++G + +EI N F
Sbjct: 13 LKPLVLFQIIDAYDR------------RPKGDN------QVMGTLLGRTKEDHIEITNCF 54
Query: 73 ELLYDPSTHS----LDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHK-ALMD 127
+ + + + LD A+ + EL +P+ +LGW+ TG S IH + +
Sbjct: 55 TVPHKEHSENKRIDLDMAYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRE 114
Query: 128 INE-SPVYVLLNPSINPAQKDLPVTIFES-ELHVIEGIPQLIFVRSSYTIETVEAERISV 185
E P+++L++ S+ + L ++ + E+ V G L+F I + ++ ++V
Sbjct: 115 CGERQPLHLLVDASLK--NQRLSTRLYCAVEMGVPGGTKGLMFSLVPLEISSENSDLVAV 172
Query: 186 DHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQ 245
+ + L + A + + R+ +L Y+ + + +N + R
Sbjct: 173 RCIEKQSQQQASKQMERFVPELVQVVDATRNIQQRLDLLLRYINDVLARKKKPDNLVGRS 232
Query: 246 VSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 301
+ + L +P +SEKF+ F D L+ L+ T E+ +K + D+
Sbjct: 233 LQAALTAVPLFDSEKFRLMFNTNVRDMLMAITLSTMIK---TQLEISEKLSCMQDQ 285
>sp|B4QD77|EI3F2_DROSI Eukaryotic translation initiation factor 3 subunit F-2
OS=Drosophila simulans GN=eIF3-S5-2 PE=3 SV=1
Length = 285
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 123/296 (41%), Gaps = 30/296 (10%)
Query: 13 LHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSF 72
L PLV+ I D Y R DN +V G ++G + +EI N F
Sbjct: 13 LKPLVLFQIIDAYDR------------RPKGDN------QVMGTLLGRNKEDHIEITNCF 54
Query: 73 ELLYDPSTHS----LDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKA-LMD 127
+ + + + LD + + EL +P+ +LGW+ TG S IH + +
Sbjct: 55 TVPHKEHSENKRIDLDMTYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRE 114
Query: 128 INE-SPVYVLLNPSINPAQKDLPVTIFES-ELHVIEGIPQLIFVRSSYTIETVEAERISV 185
E P+++L++ S+ + L ++ + E+ V G L+F I + ++ +++
Sbjct: 115 CGERQPLHLLVDASLK--NQRLSTRLYCAVEMGVPGGTKGLMFSLVPLEISSENSDLLAM 172
Query: 186 DHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQ 245
+ + A L + A + + R+ +L Y+ + + +N + R
Sbjct: 173 RCIEKQSQQQASKQMERFAPELVQVVDATRDIQQRLDLLLRYINDVLARKKKPDNVVGRS 232
Query: 246 VSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKFNTAYDR 301
+ + L +P ++SEKF+ F D L+ L+ T E+ +K + D+
Sbjct: 233 LQAALTAVPLLDSEKFRLMFNTNLRDMLMAITLSTMIK---TQLEISEKLSCMQDQ 285
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,439,558
Number of Sequences: 539616
Number of extensions: 4540199
Number of successful extensions: 12781
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 12597
Number of HSP's gapped (non-prelim): 93
length of query: 312
length of database: 191,569,459
effective HSP length: 117
effective length of query: 195
effective length of database: 128,434,387
effective search space: 25044705465
effective search space used: 25044705465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)