Query 021476
Match_columns 312
No_of_seqs 151 out of 681
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 04:42:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_U RPN8, 26S proteasome re 100.0 3.7E-65 1.3E-69 481.5 25.6 268 6-295 3-295 (338)
2 2o95_A 26S proteasome non-ATPa 100.0 7.6E-39 2.6E-43 278.5 22.0 171 5-193 4-181 (187)
3 4e0q_A COP9 signalosome comple 100.0 3.7E-40 1.3E-44 273.8 11.0 136 5-156 2-139 (141)
4 4b4t_V 26S proteasome regulato 100.0 1.3E-30 4.5E-35 242.3 17.5 236 5-271 21-294 (306)
5 2znr_A AMSH-like protease; met 99.3 3.9E-11 1.3E-15 102.8 11.5 121 7-156 7-134 (178)
6 3rzv_A STAM-binding protein; u 99.1 5.7E-10 2E-14 97.7 12.4 119 9-157 42-168 (211)
7 2kks_A Uncharacterized protein 98.7 6.7E-07 2.3E-11 73.8 15.9 129 11-177 2-137 (146)
8 2kcq_A MOV34/MPN/PAD-1 family; 98.4 7.9E-07 2.7E-11 74.0 8.9 129 12-177 2-141 (153)
9 1oi0_A AF2198, hypothetical pr 97.8 8.6E-05 3E-09 59.3 9.1 105 10-155 3-111 (124)
10 2p8r_A PRP8, PRE-mRNA-splicing 93.8 0.18 6E-06 45.2 7.7 91 51-156 59-168 (273)
11 2og4_A PRE-mRNA-splicing facto 92.1 0.1 3.4E-06 46.4 3.6 93 51-156 58-165 (254)
12 3sbg_A PRE-mRNA-splicing facto 88.6 0.85 2.9E-05 44.2 6.9 98 51-157 369-477 (565)
13 2akf_A Coronin-1A; coiled coil 73.0 8.3 0.00029 22.2 4.5 29 202-230 3-31 (32)
14 2rh2_A Dihydrofolate reductase 73.0 1.6 5.5E-05 28.6 1.7 13 102-114 24-36 (62)
15 1wrd_A TOM1, target of MYB pro 54.2 66 0.0022 24.0 8.7 84 207-298 8-92 (103)
16 1naf_A ADP-ribosylation factor 37.4 1.6E+02 0.0056 23.7 9.6 86 207-300 55-143 (158)
17 2xpp_A IWS1, ECU08_0440; trans 36.0 48 0.0017 26.5 4.8 44 218-263 60-103 (145)
18 1oxz_A ADP-ribosylation factor 34.8 2E+02 0.0067 23.9 11.4 85 207-299 71-158 (186)
19 1wr6_A ADP-ribosylation factor 31.5 61 0.0021 24.7 4.5 81 205-300 8-90 (111)
20 3nfq_A Transcription factor IW 29.6 69 0.0024 26.4 4.8 56 219-281 76-131 (170)
21 3bqp_A Proactivator polypeptid 26.0 1.5E+02 0.0053 20.0 5.7 31 224-255 11-41 (80)
22 1o3x_A ADP-ribosylation factor 21.7 2.9E+02 0.01 21.6 11.1 86 207-300 46-134 (140)
23 1nkl_A NK-lysin; saposin fold, 21.6 2E+02 0.0069 19.7 6.2 32 223-255 9-40 (78)
No 1
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-65 Score=481.52 Aligned_cols=268 Identities=24% Similarity=0.463 Sum_probs=177.4
Q ss_pred CCCceEEEehhhhhhHhHHHhhhcccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEEEEeecCCC-----c
Q 021476 6 SSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPS-----T 80 (312)
Q Consensus 6 ~~~~~V~lhPlvll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~~-----~ 80 (312)
....+|.|||||||+|+|||+|...+ .+.||+|+|||.++|+.|||+|||++|++++ .
T Consensus 3 ~~~~~V~vhPlVll~I~dH~~R~~~~-----------------~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~ 65 (338)
T 4b4t_U 3 LQHEKVTIAPLVLLSALDHYERTQTK-----------------ENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDV 65 (338)
T ss_dssp CCCSEEEECHHHHHHHHHHHHHHTTT-----------------CCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTC
T ss_pred CCCCEEEEecHHHHHHHHHHHHhhcC-----------------CCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCcc
Confidence 45678999999999999999997543 2469999999999999999999999998642 3
Q ss_pred ccccHHHHHHHHHHHhhhCCCCceEEEEecCCCCCcchHHHHHHHHhhCC-CCEEEEEcCCCCCCCCCcceEEEEeeecc
Q 021476 81 HSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINE-SPVYVLLNPSINPAQKDLPVTIFESELHV 159 (312)
Q Consensus 81 ~~iD~~~~~~m~~l~~~V~p~~~iVGWY~tg~~~~~~d~~i~~~~~~~~~-~pi~L~vD~~~~~~~~~lpi~ay~~~~~~ 159 (312)
|++|++|+++|+++|++|||++.+||||+||+.++..|+.||++|+++++ +|++|++|+... ++++|++||++....
T Consensus 66 ~~~D~~y~~~m~~~~kkV~~~e~iVGWY~tg~~~~~~d~~Ih~~~~~~~~~~pi~l~~d~~~~--~~~lpi~aY~s~~~~ 143 (338)
T 4b4t_U 66 WFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQ--GVGLPTDAYVAIEQV 143 (338)
T ss_dssp EEECHHHHHHHHHHHHHHCCSCEEEEEEECCSSCCSTHHHHHHHHGGGCCSCCCEEEECSCCC--SSSCSEEEEEEEEEC
T ss_pred ccccHHHHHHHHHHHhhcCccCCEEEEEecCCCCCccHHHHHHHHHhccCCCcEEEEecCCCC--CCCcceEEEEeehhc
Confidence 68999999999999999999999999999999999999999999999874 899999999765 578999999986544
Q ss_pred cc-C-CceeeeEeeceEEecchhhHHHHHHHhhcCCCCCCchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 021476 160 IE-G-IPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEIP 237 (312)
Q Consensus 160 ~~-g-~~~~~f~~i~~~i~~~eaErI~v~~l~~~~~~~~~~~~~~~~~~l~~~~~ai~~L~~~i~~i~~Yl~~V~~G~~~ 237 (312)
.+ | .....|.++|++|.++|+|||||+|+++.....+ ...+..++..+.+++++|+.||+.|++||++|.+|++|
T Consensus 144 ~~~~~~~~~~F~~lp~~i~~~eaE~Igv~~l~r~~~~~~---~~~l~~~l~~~~~al~~L~~~l~~i~~Yl~~V~~g~~~ 220 (338)
T 4b4t_U 144 KDDGTSTEKTFLHLPCTIEAEEAEEIGVEHLLRDVRDQA---AGGLSIRLTNQLKSLKGLQSKLKDVVEYLDKVINKELP 220 (338)
T ss_dssp SSCSTTCEEEEEEECEEECSCHHHHHHHHHHHHHHSSCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cCCCcccccEEEEeeeEeecCcHHHHHHHHHHhccccCc---ccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 33 2 3467899999999999999999999998543322 24567789999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCCCh-----------------HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 021476 238 CENSLLRQVSSLLRRLPAIES-----------------EKFQDDFLMEYNDTLLIAYLAMFTNCASTMNELVDKF 295 (312)
Q Consensus 238 ~d~~ilR~i~~l~~~lP~~~~-----------------~~f~~~~~~~~~D~lmi~yLs~ltk~~~~l~~l~~K~ 295 (312)
+|++|||+|+++|+++|.++. ++|+++|+.+.||+||++|||+|+|++.+|+++++..
T Consensus 221 ~n~~ilr~l~~~~~~lP~l~~~~~~~~~~~~~~~~~~~~~f~~~f~~~~nD~Lmv~YLs~L~rs~~al~eli~nk 295 (338)
T 4b4t_U 221 INHTILGKLQDVFNLLPNLGTPDDDEIDVENHDRINISNNLQKALTVKTNDELMVIYISNLVRSIIAFDDLIENK 295 (338)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHhhCCcCCcccccccccccccccchhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998854 4689999999999999999999999999999999765
No 2
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=100.00 E-value=7.6e-39 Score=278.49 Aligned_cols=171 Identities=27% Similarity=0.466 Sum_probs=147.9
Q ss_pred CCCCceEEEehhhhhhHhHHHhhhcccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEEEEeecCCC-----
Q 021476 5 SSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPS----- 79 (312)
Q Consensus 5 ~~~~~~V~lhPlvll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~~----- 79 (312)
+.+..+|.|||+|+|+|+|||+|...+ +.+.+|+|+|||.+.++.++|+|||++|+.+.
T Consensus 4 ~~~~~~V~i~plvllkI~~H~~r~~~~----------------~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~ 67 (187)
T 2o95_A 4 ELAVQKVVVHPLVLLSVVDHFNRIGKV----------------GNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDS 67 (187)
T ss_dssp CCSCSEEEECHHHHHHHHHHHHHHHHT----------------TCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTT
T ss_pred CCCCCEEEEchHHHHHHHHHHhhhccc----------------CCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcc
Confidence 456689999999999999999998531 12569999999999999999999999998643
Q ss_pred cccccHHHHHHHHHHHhhhCCCCceEEEEecCCCCCcchHHHHHHHHhhCCCCEEEEEcCCCCCCCCCcceEEEEeeecc
Q 021476 80 THSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHV 159 (312)
Q Consensus 80 ~~~iD~~~~~~m~~l~~~V~p~~~iVGWY~tg~~~~~~d~~i~~~~~~~~~~pi~L~vD~~~~~~~~~lpi~ay~~~~~~ 159 (312)
.+.+|.+|+++|++++++++|++.+||||++++..+..|..||++|++++++|++|++||... .+++|++||++....
T Consensus 68 ~~~~d~ey~~~m~~~~~~v~~~~~iVGWY~s~~~~s~~d~~i~~~~~~~~~~~v~Livd~~~~--~~~l~i~ay~~~~~~ 145 (187)
T 2o95_A 68 VWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPK--DLGLPTEAYISVEEV 145 (187)
T ss_dssp SEEECHHHHHHHHHHHHTTSSSCEEEEEEECCSSCCTTHHHHHHHHTTTCTTCEEEEECCCTT--C-CCSEEEEEEEEEC
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCCEEEEEcCCCcCCcccHHHHHHHHhcCCCCEEEEECCCCC--CCCcCeEEEEEechh
Confidence 258999999999999999999999999999999999999999999999999999999999754 245999999986544
Q ss_pred c-cC-CceeeeEeeceEEecchhhHHHHHHHhhcCC
Q 021476 160 I-EG-IPQLIFVRSSYTIETVEAERISVDHVAHLKP 193 (312)
Q Consensus 160 ~-~g-~~~~~f~~i~~~i~~~eaErI~v~~l~~~~~ 193 (312)
. +| .....|.++|++|.++|+|||||+|+++...
T Consensus 146 ~~~~~~~~~~F~~ip~~I~~~eaE~i~v~~l~~~~~ 181 (187)
T 2o95_A 146 HDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIK 181 (187)
T ss_dssp C----CCEEEEEEEEEEECCCHHHHHHHHHHHHHCC
T ss_pred cCCCCcccCEEEEeeEEEecCcHHHHHHHHHHhcCC
Confidence 3 23 2367899999999999999999999998653
No 3
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=100.00 E-value=3.7e-40 Score=273.81 Aligned_cols=136 Identities=42% Similarity=0.801 Sum_probs=111.7
Q ss_pred CCCCceEEEehhhhhhHhHHHhhhcccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEEEEeecCC--Cccc
Q 021476 5 SSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDP--STHS 82 (312)
Q Consensus 5 ~~~~~~V~lhPlvll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~--~~~~ 82 (312)
..++.+|+|||||||+|+|||+|.+.+ .+.+.+|+|+|||.++++.+||+|||++|+++ +.+.
T Consensus 2 ~~~~~~V~ihplvll~I~dH~~R~~~~---------------~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~~ 66 (141)
T 4e0q_A 2 SHMSVTISLHPLVIMNISEHWTRFRAQ---------------HGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETV 66 (141)
T ss_dssp ---CEEEEECHHHHHHHHHHHHCC---------------------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEEE
T ss_pred CCCcEEEEEecHHHHHHHHHHhhhccc---------------CCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCcee
Confidence 456789999999999999999997543 12357999999999999999999999999975 3468
Q ss_pred ccHHHHHHHHHHHhhhCCCCceEEEEecCCCCCcchHHHHHHHHhhCCCCEEEEEcCCCCCCCCCcceEEEEee
Q 021476 83 LDRAFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESE 156 (312)
Q Consensus 83 iD~~~~~~m~~l~~~V~p~~~iVGWY~tg~~~~~~d~~i~~~~~~~~~~pi~L~vD~~~~~~~~~lpi~ay~~~ 156 (312)
+|.+|+++|++++|+|||++.+||||++|+.++..|+.||++|++++++||+|++||..+. .++||++||++.
T Consensus 67 ~d~~y~~~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~~~~-~g~Lp~~ay~sv 139 (141)
T 4e0q_A 67 INKDYYNKKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPLSRS-VDHLPLKLFESL 139 (141)
T ss_dssp ECHHHHHHHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCSCCC-CTTHHHHHHCC-
T ss_pred ecHHHHHHHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCCccC-CCeEEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999998754 468999999975
No 4
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-30 Score=242.25 Aligned_cols=236 Identities=14% Similarity=0.193 Sum_probs=178.4
Q ss_pred CCCCceEEEehhhhhhHhHHHhhhcccccCCCCCcccCCCCCCCCCCceEEEEeeEEe-CCEEEEEEEEEeecCCCc---
Q 021476 5 SSSGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQR-GRTVEIFNSFELLYDPST--- 80 (312)
Q Consensus 5 ~~~~~~V~lhPlvll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~-~~~veI~nsF~vp~~~~~--- 80 (312)
.++..+|.|+|+|+|+|++|+.+. .+..|+|+|||... ++.++|+|||++|+.+++
T Consensus 21 ~~~~~~V~is~lallkm~~Ha~~~--------------------~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v 80 (306)
T 4b4t_V 21 DDTKETVYISSIALLKMLKHGRAG--------------------VPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSV 80 (306)
T ss_dssp CSSCCEEEECHHHHHHHHHHTCSC--------------------SSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCE
T ss_pred CCCCCEEEEeHHHHHHHHHHhcCC--------------------CCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCch
Confidence 456789999999999999999432 24699999999865 668999999999986532
Q ss_pred ccccHHHHHHHHHHHhhhCCCCceEEEEecCCC----CCcchHHHHHHHHhhCCCCEEEEEcCCCCCCCCCcceEEEEee
Q 021476 81 HSLDRAFLEKKQELYKKVFPHFYILGWYSTGSD----AQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESE 156 (312)
Q Consensus 81 ~~iD~~~~~~m~~l~~~V~p~~~iVGWY~tg~~----~~~~d~~i~~~~~~~~~~pi~L~vD~~~~~~~~~lpi~ay~~~ 156 (312)
+++|.+|+.+|.++++++++++.+||||++++. ++..|+..|..|+...+++|+|++||..+. +|+++++||++.
T Consensus 81 ~~~d~~y~~~m~~~~~~v~~~~~vVGWYhShP~~~~~~S~~Di~tq~~yQ~~~~~~V~lV~Dp~~t~-~G~~~i~Afr~~ 159 (306)
T 4b4t_V 81 EAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSV-KGKVVIDAFRLI 159 (306)
T ss_dssp ECCCHHHHHHHHHHHHHHSCCCCCSEEEEECCSSSCCCCHHHHHHHHHHHHHCSSCEEEEECSSSSS-SCSSCEEEEECC
T ss_pred hcCCHHHHHHHHHHHHHhCCCcceeeEEecCCCCCCcCCHHHHHHHHHHHhcCCCcEEEEECCCcCC-CCceeeeEEEec
Confidence 468999999999999999999999999999875 456788888888999999999999997654 689999999974
Q ss_pred eccc----c---------CC------------ceeeeEeeceEEecchhhHHHHHHHhhcCCCCCCchhhHHHhhHHHHH
Q 021476 157 LHVI----E---------GI------------PQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIH 211 (312)
Q Consensus 157 ~~~~----~---------g~------------~~~~f~~i~~~i~~~eaErI~v~~l~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
.... . |. ....|.++++++..++.|+..++.+.+.....+ -.+..-.....
T Consensus 160 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~yy~l~i~~~ks~le~~~L~~L~~~~w~~~----l~~~~~~~~~~ 235 (306)
T 4b4t_V 160 DTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLHKEQWQSG----LKMYDYEEKEE 235 (306)
T ss_dssp HHHHHHCCCCCSCC----------------------CEEECSCCCCCSSCTHHHHHHHHC--------------CHHHHH
T ss_pred CccccccccCcccccccccccCchhhhhhhccccceEEEeeeEEEeCcHHHHHHHHHHhcccccc----cccCcHHHHHH
Confidence 3210 0 00 023599999999999999999999987432211 11223345566
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHhcCCCCCh-----HHHHHHHHHhhch
Q 021476 212 SAIKMLNSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIES-----EKFQDDFLMEYND 271 (312)
Q Consensus 212 ~ai~~L~~~i~~i~~Yl~~V~~G~~~~d~~ilR~i~~l~~~lP~~~~-----~~f~~~~~~~~~D 271 (312)
.+.+.+.++++.+.+|.+.|.+++...+.++. ...+|++++ +.++..++++..+
T Consensus 236 ~~~~~i~~m~~~~~~y~k~v~~e~~~~~~~l~------~~~vgk~dp~~~l~~~~~~l~~~ni~~ 294 (306)
T 4b4t_V 236 SNLAATKSMVKIAEQYSKRIEEEKELTEEELK------TRYVGRQDPKKHLSETADETLENNIVS 294 (306)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHH------HTCSCSSCCSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCHHHHH------hhccCccChHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999988765555543 456787776 4556655555444
No 5
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=99.25 E-value=3.9e-11 Score=102.81 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=91.2
Q ss_pred CCceEEEehhhhhhHhHHHhhhcccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEEEEeecCCCccc---c
Q 021476 7 SGLTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTHS---L 83 (312)
Q Consensus 7 ~~~~V~lhPlvll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~~~~~---i 83 (312)
.-..|.|-..++.+|+.|+.++... +..+||.|+|...++..+|+++|++|...+... .
T Consensus 7 ~~~~v~i~~~~l~k~l~hA~~~~~~------------------~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~ 68 (178)
T 2znr_A 7 GLRCVVLPEDLCHKFLQLAESNTVR------------------GIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDME 68 (178)
T ss_dssp SCCCEEEETTHHHHHHHHHHHHHTT------------------TCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEEC
T ss_pred CcEEEEECHHHHHHHHHHHHhCCCC------------------CceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccC
Confidence 3467899999999999999876421 358999999999989999999999997532222 3
Q ss_pred cHHHHHHHHHHHhhhCCCCceEEEEecCC----CCCcchHHHHHHHHhhCCCCEEEEEcCCCCCCCCCcceEEEEee
Q 021476 84 DRAFLEKKQELYKKVFPHFYILGWYSTGS----DAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESE 156 (312)
Q Consensus 84 D~~~~~~m~~l~~~V~p~~~iVGWY~tg~----~~~~~d~~i~~~~~~~~~~pi~L~vD~~~~~~~~~lpi~ay~~~ 156 (312)
+.+- .++. ....++.+||||+|.+ .++..|+..|..|+...+..++++++|... .++||+..
T Consensus 69 ~~~e---~~~~--~~~~~l~~vGwyHSHP~~~~~pS~~Dv~tq~~yq~~~~~~v~iIvsp~~~------~~~afrl~ 134 (178)
T 2znr_A 69 NVEE---LFNV--QDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHK------DTGIFRLT 134 (178)
T ss_dssp CHHH---HHHH--HHHHTCEEEEEEEECSSSCSCCCHHHHHHHHHHHHHCTTCEEEEEEGGGT------EEEEEEEC
T ss_pred CHHH---HHHH--HHhCCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhhcCCEEEEEEcCCCC------cceEEEEE
Confidence 3221 1111 2345899999999985 367788888888887777889999998642 27999974
No 6
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=99.12 E-value=5.7e-10 Score=97.67 Aligned_cols=119 Identities=11% Similarity=0.114 Sum_probs=88.5
Q ss_pred ceEEEehhhhhhHhHHHhhhcccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEEEEeecCCCcc---cccH
Q 021476 9 LTFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTH---SLDR 85 (312)
Q Consensus 9 ~~V~lhPlvll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~~~~---~iD~ 85 (312)
..|.|-.-++-+|+.|...+... +..+||.|+|...++.++|+++|..|...+.. ..+.
T Consensus 42 r~v~Ipk~ll~kfL~~A~~~tp~------------------~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~ 103 (211)
T 3rzv_A 42 RHVVVPGRLCPQFLQLASANTAR------------------GVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENE 103 (211)
T ss_dssp CCEEEETTHHHHHHHHHHHHHHT------------------TCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCH
T ss_pred EEEEECHHHHHHHHHHHHhCCCC------------------CceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccCh
Confidence 57888899999999998776421 35899999999999999999999887643321 2222
Q ss_pred -HHHHHHHHHHhhhCCCCceEEEEecCC----CCCcchHHHHHHHHhhCCCCEEEEEcCCCCCCCCCcceEEEEeee
Q 021476 86 -AFLEKKQELYKKVFPHFYILGWYSTGS----DAQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESEL 157 (312)
Q Consensus 86 -~~~~~m~~l~~~V~p~~~iVGWY~tg~----~~~~~d~~i~~~~~~~~~~pi~L~vD~~~~~~~~~lpi~ay~~~~ 157 (312)
+.++-+.+ .++.+||||+|.+ .++..|+..|..|+...+..|+|++||.. .++.||+...
T Consensus 104 ~e~~~~~~~------~~l~~vGWyHSHP~~~~~pS~~Dl~tq~~~q~~~~~~I~IVvsP~~------~~lgaFrLtp 168 (211)
T 3rzv_A 104 EELFLIQDQ------QGLITLGWIHTHPTQTAFLSSVDLHTHCSYQMMLPESVAIVCSPKF------QETGFFKLTD 168 (211)
T ss_dssp HHHHHHHHH------HTCEEEEEEEECTTSCSCCCHHHHHHHHHHHHHCTTCEEEEEETTT------TEEEEEEECH
T ss_pred HHHHHHHhh------CCCEEEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEEcCCC------CeeeEEEecc
Confidence 22211111 4899999999985 36788888888888777788999999862 2699999753
No 7
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=98.70 E-value=6.7e-07 Score=73.81 Aligned_cols=129 Identities=12% Similarity=0.061 Sum_probs=89.5
Q ss_pred EEEehhhhhhHhHHHhhhcccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEEEEeecCC---CcccccHHH
Q 021476 11 FKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDP---STHSLDRAF 87 (312)
Q Consensus 11 V~lhPlvll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~---~~~~iD~~~ 87 (312)
+.|...++..|..|..+.. +..+||.|+|...++...|+..|++|... ..+.+|.+.
T Consensus 2 l~i~~~~l~~i~~ha~~~~--------------------p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~~f~~dp~~ 61 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQAL--------------------PNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEHFSMDPRE 61 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHT--------------------TSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSSCCCCHHH
T ss_pred EEECHHHHHHHHHHHHhcC--------------------CcceEEEEEEEEcCCCcEEEEEEECCCcCCCCceEEECHHH
Confidence 5678889999999987653 46899999999998889999999998432 235677666
Q ss_pred HHHHHHHHhhhCCCCceEEEEecCCC----CCcchHHHHHHHHhhCCCCEEEEEcCCCCCCCCCcceEEEEeeeccccCC
Q 021476 88 LEKKQELYKKVFPHFYILGWYSTGSD----AQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFESELHVIEGI 163 (312)
Q Consensus 88 ~~~m~~l~~~V~p~~~iVGWY~tg~~----~~~~d~~i~~~~~~~~~~pi~L~vD~~~~~~~~~lpi~ay~~~~~~~~g~ 163 (312)
+.+..+...+ .++.+||||+|.+. ++..| ++. +.. ...+++++.+.. .+...+++|+. .+|
T Consensus 62 ~~~~~~~~~~--~g~~ivG~~HSHP~~~~~PS~~D--~~~--~~~-~~~~~lIvs~~~---~~~~~~~af~~----~~~- 126 (146)
T 2kks_A 62 QLTAVKDMRK--NGWVMLGNFHSHPATPARPSAED--KRL--AFD-PSLSYLIISLAE---PQKPVCKSFLI----KKD- 126 (146)
T ss_dssp HHHHHHHHHH--HTCEEEEEEEEESSSCSSCCHHH--HTT--CCS-SSCEEEEEECSC---SSSCEEEEEEE----CSS-
T ss_pred HHHHHHHHHH--CCCEEEEEEeCCCcCCCCCCHHH--HHh--hhc-CCCeEEEEEccC---CCceEEEEEEE----eCC-
Confidence 6555544433 25799999999874 34444 332 112 344788887642 13456999986 233
Q ss_pred ceeeeEeeceEEec
Q 021476 164 PQLIFVRSSYTIET 177 (312)
Q Consensus 164 ~~~~f~~i~~~i~~ 177 (312)
.|.+.++.+..
T Consensus 127 ---~~~e~~i~~~~ 137 (146)
T 2kks_A 127 ---GVDEEEIILKE 137 (146)
T ss_dssp ---CEEEECEEEES
T ss_pred ---eEEEEEEEEeh
Confidence 38888888743
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=98.42 E-value=7.9e-07 Score=73.96 Aligned_cols=129 Identities=13% Similarity=0.137 Sum_probs=84.3
Q ss_pred EEehhhhhhHhHHHhhhcccccCCCCCcccCCCCCCCCCCceEEEEeeEEe-CCEEEEEEEEEeecC--CC---cccccH
Q 021476 12 KLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQR-GRTVEIFNSFELLYD--PS---THSLDR 85 (312)
Q Consensus 12 ~lhPlvll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~-~~~veI~nsF~vp~~--~~---~~~iD~ 85 (312)
.|.+.++..|..|..+.. +..+||.|+|... ++.+.|+..|+++.. .+ .+.+|.
T Consensus 2 ~i~~~~l~~i~~ha~~~~--------------------p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp 61 (153)
T 2kcq_A 2 KTTPDILDQIRVHGADAY--------------------PEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELTA 61 (153)
T ss_dssp BCCHHHHHHHHHHHHHHT--------------------TSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSCCC
T ss_pred EeCHHHHHHHHHHHHhcC--------------------CcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEECH
Confidence 356778899999997753 4689999999998 788999999999864 21 245664
Q ss_pred HHHHHHHHHHhhhCCCCceEEEEecCCC----CCcchHHHHHHHHhhCCCCEEEEEcCCCCCCCCC-cceEEEEeeeccc
Q 021476 86 AFLEKKQELYKKVFPHFYILGWYSTGSD----AQESDMHIHKALMDINESPVYVLLNPSINPAQKD-LPVTIFESELHVI 160 (312)
Q Consensus 86 ~~~~~m~~l~~~V~p~~~iVGWY~tg~~----~~~~d~~i~~~~~~~~~~pi~L~vD~~~~~~~~~-lpi~ay~~~~~~~ 160 (312)
+.+.+..+..++- ++.+||||+|.+. ++..| +..+ .....+++++.+. .++ ..+++|+..
T Consensus 62 ~~~~~~~~~~~~~--g~~ivG~yHSHP~~~~~PS~~D--~~~~---~~~~~~~lIvs~~----~~~~~~~~af~~~---- 126 (153)
T 2kcq_A 62 DDYRAADAAAQEQ--GLDVVGVYHSHPDHPARPSATD--LEEA---TFPGFTYVIVSVR----DGAPEALTAWALA---- 126 (153)
T ss_dssp CSHHHHHHHHHHH--TCEEEEEEEECSSSSSSCCHHH--HHTC---CCTTSEEEEEEEE----TTEEEEEEEEEEC----
T ss_pred HHHHHHHHHHHHC--CCeEEEEEeCCCCCCCCCCHHH--HHhh---hcCCCeEEEEECC----CCCccEEEEEEEe----
Confidence 3333333333332 6899999999874 34455 3221 2234578888653 123 348999862
Q ss_pred cCCceeeeEeeceEEec
Q 021476 161 EGIPQLIFVRSSYTIET 177 (312)
Q Consensus 161 ~g~~~~~f~~i~~~i~~ 177 (312)
++ ...|.+.++.|..
T Consensus 127 ~~--~g~~~e~~i~v~~ 141 (153)
T 2kcq_A 127 PD--RSEFHREDIVRPD 141 (153)
T ss_dssp TT--CSCEEEECCBCCC
T ss_pred CC--CCcEEEEEEEEec
Confidence 11 1248888887754
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=97.82 E-value=8.6e-05 Score=59.25 Aligned_cols=105 Identities=9% Similarity=0.031 Sum_probs=65.3
Q ss_pred eEEEehhhhhhHhHHHhhhcccccCCCCCcccCCCCCCCCCCceEEEEeeEEeCCEEEEEEEEEeecCCCcccccHHHHH
Q 021476 10 TFKLHPLVIVNISDHYTRVKSQMNHSSSATTTNDDNNNGAQPRVYGCVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLE 89 (312)
Q Consensus 10 ~V~lhPlvll~I~dh~~R~~~~~~~~~~~~~~~~~~~~~~~~~v~G~LLG~~~~~~veI~nsF~vp~~~~~~~iD~~~~~ 89 (312)
.+.|...++..|..|..+.. +..+||.|+|... .|+..|++| .... ..+..|..
T Consensus 3 ~v~i~~~~l~~i~~ha~~~~--------------------P~E~cGlL~g~~~----~v~~~~~~p-~~~~-~~~~~f~~ 56 (124)
T 1oi0_A 3 SMKISRGLLKTILEAAKSAH--------------------PDEFIALLSGSKD----VMDELIFLP-FVSG-SVSAVIHL 56 (124)
T ss_dssp SCEECHHHHHHHHHHHHHHT--------------------TSCCEEEEEESTT----EECEEEECC-CCC----------
T ss_pred EEEEcHHHHHHHHHHHHhcC--------------------CCeeEEEEecccC----EEEEEEECC-CCCC-CcCceeee
Confidence 36788889999999998754 4689999999863 788999999 4322 11112222
Q ss_pred HHHHHHhhhCCCCceEEEEecCCC----CCcchHHHHHHHHhhCCCCEEEEEcCCCCCCCCCcceEEEEe
Q 021476 90 KKQELYKKVFPHFYILGWYSTGSD----AQESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIFES 155 (312)
Q Consensus 90 ~m~~l~~~V~p~~~iVGWY~tg~~----~~~~d~~i~~~~~~~~~~pi~L~vD~~~~~~~~~lpi~ay~~ 155 (312)
.|.. .++.+||||++++. ++..|. .. +.. ...+++++.+.. +.-.+++|..
T Consensus 57 ~~~~------~~~~ivG~~HSHP~~~~~PS~~D~--~~--~~~-~~~~~lIvs~~~----~~~~~~~f~~ 111 (124)
T 1oi0_A 57 DMLP------IGMKVFGTVHSHPSPSCRPSEEDL--SL--FTR-FGKYHIIVCYPY----DENSWKCYNR 111 (124)
T ss_dssp ----------CCCEEEEEEEEESSSCCSCCHHHH--HH--HHH-SCSEEEEEETTC----CTTCEEEEET
T ss_pred eecc------CCCEEEEEEEECcCCCCccCHHHH--Hh--hhc-CCCEEEEEEccC----CCceEEEEec
Confidence 2221 56899999999874 344553 32 222 345788887532 2234888874
No 10
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=93.76 E-value=0.18 Score=45.22 Aligned_cols=91 Identities=19% Similarity=0.297 Sum_probs=61.4
Q ss_pred CceEEEEeeEEe---CCEEEEEEEEEeecCCCccccc-------HHHHHHHHHHHhhhCCCCceEEEEecCC----CCCc
Q 021476 51 PRVYGCVIGIQR---GRTVEIFNSFELLYDPSTHSLD-------RAFLEKKQELYKKVFPHFYILGWYSTGS----DAQE 116 (312)
Q Consensus 51 ~~v~G~LLG~~~---~~~veI~nsF~vp~~~~~~~iD-------~~~~~~m~~l~~~V~p~~~iVGWY~tg~----~~~~ 116 (312)
..++|.|.|.-. .+..||+.---+|...+...++ .+|+ -++.++||=+|.+ .+++
T Consensus 59 Tq~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv~~~~~~p~~~~l-----------~dLe~LGWIHTqp~e~~~LSs 127 (273)
T 2p8r_A 59 TQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQVNLPTQLPDHELL-----------RDFEPLGWMHTQPNELPQLSP 127 (273)
T ss_dssp SCCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCEECCSSCCCCTTT-----------TTSEEEEEEEEESSCCSSCCH
T ss_pred ceEEEEEeccCCCCCCCeEEEEEEEECCccCCCceEECCCcCcchhhh-----------ccccccceEeeCCCCCCCcCH
Confidence 479999999985 3567787665555432211111 1232 6999999999965 3678
Q ss_pred chHHHHHHHHhh-----CCCCEEEEEcCCCCCCCCCcceEEEEee
Q 021476 117 SDMHIHKALMDI-----NESPVYVLLNPSINPAQKDLPVTIFESE 156 (312)
Q Consensus 117 ~d~~i~~~~~~~-----~~~pi~L~vD~~~~~~~~~lpi~ay~~~ 156 (312)
.|+..|.-|+.. .+.+|.+++-+. .+...+.||+..
T Consensus 128 ~Dl~tH~~~~~~~~~~~~~e~I~Ivcsft----pgs~sl~af~LT 168 (273)
T 2p8r_A 128 QDVTTHAKLLTDNISWDGEKTVMITCSFT----PGSVSLTAYKLT 168 (273)
T ss_dssp HHHHHHHHHHHHCTTCCTTTCEEEEEEEE----TTEEEEEEEEEC
T ss_pred HHHHHHHHHHhcccccCCCceEEEEEecC----CCCceeEEEEcC
Confidence 999999888753 236788877543 245568999874
No 11
>2og4_A PRE-mRNA-splicing factor 8; isopeptidase, JAB1/MPN domain, protein-PR interaction, PRP8P, pseudoenzyme, spliceosome activation; 2.00A {Saccharomyces cerevisiae}
Probab=92.09 E-value=0.1 Score=46.35 Aligned_cols=93 Identities=13% Similarity=0.184 Sum_probs=61.5
Q ss_pred CceEEEEeeEEe---CCEEEEEEEEEeecCCCccccc-------HHHHHHHHHHHhhhCCCCceEEEEecCC----CCCc
Q 021476 51 PRVYGCVIGIQR---GRTVEIFNSFELLYDPSTHSLD-------RAFLEKKQELYKKVFPHFYILGWYSTGS----DAQE 116 (312)
Q Consensus 51 ~~v~G~LLG~~~---~~~veI~nsF~vp~~~~~~~iD-------~~~~~~m~~l~~~V~p~~~iVGWY~tg~----~~~~ 116 (312)
..++|.|.|.-. .+..||+.---+|...+...++ .+|.. --++..+||=+|.+ .+++
T Consensus 58 Tq~cG~LyG~~~~d~~~v~eI~~ivippQ~gt~~s~~~~~~~p~~~~~~---------l~dLe~LGWIHTqptq~~fLSs 128 (254)
T 2og4_A 58 IQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQISNIPDIGDLPD---------TEGLELLGWIHTQTEELKFMAA 128 (254)
T ss_dssp SCCEEEEEEEECSSCTTEEEEEEEECCCEEEETTEEEECCCCCCTTSTT---------CTTCEEEEEEEEESSCCSSCCH
T ss_pred ceEEEEEEccCCCCCCCeEEEEEEEECCccCCCceEECCCcCccccchh---------hcCCEecceEeeCCCCCcccCH
Confidence 479999999985 3567777655555422111111 11111 26899999999974 3678
Q ss_pred chHHHHHHHHh-hCCCCEEEEEcCCCCCCCCCcceEEEEee
Q 021476 117 SDMHIHKALMD-INESPVYVLLNPSINPAQKDLPVTIFESE 156 (312)
Q Consensus 117 ~d~~i~~~~~~-~~~~pi~L~vD~~~~~~~~~lpi~ay~~~ 156 (312)
.|+..|.-|+. ..+.+|++++-+. .+...+.||+..
T Consensus 129 ~Dl~tH~~~~~~~~~eaIaIvcsft----pgs~sl~af~LT 165 (254)
T 2og4_A 129 SEVATHSKLFADKKRDCIDISIFST----PGSVSLSAYNLT 165 (254)
T ss_dssp HHHHHHHHHHTTTCTTCEEEEEEEE----TTEEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCeEEEEEecC----CCCceeEEEEcC
Confidence 99999988876 4467888887654 234568999974
No 12
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=88.63 E-value=0.85 Score=44.23 Aligned_cols=98 Identities=12% Similarity=0.100 Sum_probs=61.2
Q ss_pred CceEEEEeeEEeC---CEEEEEEEEEeecCCCcccccHHHHHHHHHHHhh---hCCCCceEEEEecCC----CCCcchHH
Q 021476 51 PRVYGCVIGIQRG---RTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKK---VFPHFYILGWYSTGS----DAQESDMH 120 (312)
Q Consensus 51 ~~v~G~LLG~~~~---~~veI~nsF~vp~~~~~~~iD~~~~~~m~~l~~~---V~p~~~iVGWY~tg~----~~~~~d~~ 120 (312)
..++|.|.|.... +..||+..--+|.-++...++.. . .. ..+ .-.++.++||-+|.+ .+++.|+.
T Consensus 369 TQicGyLyG~sp~dn~nVkEI~cIVipPQ~Gt~~sv~lp-~---lp-~he~~~~l~dLe~LGWIHTqp~et~fLSs~Dl~ 443 (565)
T 3sbg_A 369 IQVAAFIYGMSAKDHPKVKEIKTVVLVPQLGHVGSVQIS-N---IP-DIGDLPDTEGLELLGWIHTQTEELKFMAASEVA 443 (565)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEEEECCCEEECSSCEEEC-C---CC-CCTTSTTCTTCEEEEEEEEESSCCSSCCHHHHH
T ss_pred ceeEEEEecCCCCCCCCeEEEEEEEECCccCCCceEECC-C---CC-ccccccccccCEecceeeecCCcccccCHHHHH
Confidence 4799999999873 45566655444543322222211 0 00 000 126899999999864 37889999
Q ss_pred HHHHHHhhC-CCCEEEEEcCCCCCCCCCcceEEEEeee
Q 021476 121 IHKALMDIN-ESPVYVLLNPSINPAQKDLPVTIFESEL 157 (312)
Q Consensus 121 i~~~~~~~~-~~pi~L~vD~~~~~~~~~lpi~ay~~~~ 157 (312)
.|.-+...+ ...|.+.+--. .|...+.||....
T Consensus 444 THakl~~~n~~~~I~itvsft----PGS~SLsAy~LT~ 477 (565)
T 3sbg_A 444 THSKLFADKKRDCIDISIFST----PGSVSLSAYNLTD 477 (565)
T ss_dssp HHHHHHSSSCTTCEEEEEEEE----TTEEEEEEEEECH
T ss_pred HHHHHHHhCCCCeEEEEEEec----CCceEEEEEecCH
Confidence 998776543 35676666432 4678899998754
No 13
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=72.98 E-value=8.3 Score=22.16 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=23.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 021476 202 QLAAHLTGIHSAIKMLNSRIRVLHHYLVA 230 (312)
Q Consensus 202 ~~~~~l~~~~~ai~~L~~~i~~i~~Yl~~ 230 (312)
.+..++..+..-+++|++|+|.+-+-+++
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667778888899999999998887664
No 14
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=72.98 E-value=1.6 Score=28.63 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=9.8
Q ss_pred CceEEEEecCCCC
Q 021476 102 FYILGWYSTGSDA 114 (312)
Q Consensus 102 ~~iVGWY~tg~~~ 114 (312)
-.|||||++.-.+
T Consensus 24 g~ivgwyct~ltp 36 (62)
T 2rh2_A 24 GQIVGWYCTNLTP 36 (62)
T ss_dssp EEEEEEECCSSCS
T ss_pred ceEeEEEEccccc
Confidence 3799999987443
No 15
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=54.20 E-value=66 Score=24.03 Aligned_cols=84 Identities=13% Similarity=0.259 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCChHHHHHHHHHHhcCCCCChHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 021476 207 LTGIHSAIKMLNSRIRVLHHYLVAMQKGEI-PCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMFTNCA 285 (312)
Q Consensus 207 l~~~~~ai~~L~~~i~~i~~Yl~~V~~G~~-~~d~~ilR~i~~l~~~lP~~~~~~f~~~~~~~~~D~lmi~yLs~ltk~~ 285 (312)
+......+...+..++.+-+-|.....|+. +.|.+++..+...|.+. .+.+.+......+| .+|+.+.+.-
T Consensus 8 ~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~----qp~i~~li~~~~de----e~l~~lL~~N 79 (103)
T 1wrd_A 8 IGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAM----QQRVLELIPQIANE----QLTEELLIVN 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHH----HHHHHHHHhccCCH----HHHHHHHHhh
Confidence 334445555555555555665666666654 35778999999888753 24555666655555 3556666667
Q ss_pred HHHHHHHHHHhHh
Q 021476 286 STMNELVDKFNTA 298 (312)
Q Consensus 286 ~~l~~l~~K~~~~ 298 (312)
..|+.++.||...
T Consensus 80 D~L~~vl~ry~~~ 92 (103)
T 1wrd_A 80 DNLNNVFLRHERF 92 (103)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777788887654
No 16
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=37.36 E-value=1.6e+02 Score=23.73 Aligned_cols=86 Identities=13% Similarity=0.229 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CC-ChHHHHHHHHHHhcCCCCChHHHHHHHHHh-hchHHHHHHHHHHHH
Q 021476 207 LTGIHSAIKMLNSRIRVLHHYLVAMQKGEI-PC-ENSLLRQVSSLLRRLPAIESEKFQDDFLME-YNDTLLIAYLAMFTN 283 (312)
Q Consensus 207 l~~~~~ai~~L~~~i~~i~~Yl~~V~~G~~-~~-d~~ilR~i~~l~~~lP~~~~~~f~~~~~~~-~~D~lmi~yLs~ltk 283 (312)
+......+..++..++.+-+-|.....|+. +. |.+++..|.+.|.+. .+.+.+..... .+| .+|..+.+
T Consensus 55 ~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~----qp~i~~Li~e~~dde----e~L~elL~ 126 (158)
T 1naf_A 55 ISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERM----RPTLFRLASDTEDND----EALAEILQ 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTH----HHHHHHHHHHCCSCH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHH----HHHHHHHHHHccCCH----HHHHHHHH
Confidence 344455777777777777777888777765 33 889999999999753 34566666543 345 34567777
Q ss_pred HHHHHHHHHHHHhHhhh
Q 021476 284 CASTMNELVDKFNTAYD 300 (312)
Q Consensus 284 ~~~~l~~l~~K~~~~~~ 300 (312)
.-..|+.++.||.....
T Consensus 127 ~ND~Ln~vl~kY~~~~~ 143 (158)
T 1naf_A 127 ANDNLTQVINLYKQLVR 143 (158)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 77888888888866543
No 17
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=35.97 E-value=48 Score=26.52 Aligned_cols=44 Identities=11% Similarity=0.329 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHhcCCCCChHHHHH
Q 021476 218 NSRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQD 263 (312)
Q Consensus 218 ~~~i~~i~~Yl~~V~~G~~~~d~~ilR~i~~l~~~lP~~~~~~f~~ 263 (312)
..-++.|-.+|+-..+|.+| +..|-+.|.+++..+| ++.+.+.+
T Consensus 60 ~giL~~l~~WL~PLpDgsLP-~~~Ir~~lL~~L~~lP-I~~e~Lk~ 103 (145)
T 2xpp_A 60 EGILDEIKGWLEPLPDKSMP-NIKIRKRLLDVLKTMK-IHKEHLVT 103 (145)
T ss_dssp TTHHHHHHHHHSCCTTSCCC-CHHHHHHHHHHHHTSC-CCHHHHHH
T ss_pred cCHHHHHHHHhCcCCCCCCC-CHHHHHHHHHHHHHCC-CCHHHhhc
Confidence 34567888899988899886 8999999999999999 77666554
No 18
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=34.81 E-value=2e+02 Score=23.91 Aligned_cols=85 Identities=13% Similarity=0.243 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC--ChHHHHHHHHHHhcCCCCChHHHHHHHHHh-hchHHHHHHHHHHHH
Q 021476 207 LTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC--ENSLLRQVSSLLRRLPAIESEKFQDDFLME-YNDTLLIAYLAMFTN 283 (312)
Q Consensus 207 l~~~~~ai~~L~~~i~~i~~Yl~~V~~G~~~~--d~~ilR~i~~l~~~lP~~~~~~f~~~~~~~-~~D~lmi~yLs~ltk 283 (312)
+......+..++..++.+-+-|.....|+... |.+++..|.+.|.+. ...+.+..... .+| .+|+.+.+
T Consensus 71 ~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~----qp~i~~Li~e~~dde----e~L~elL~ 142 (186)
T 1oxz_A 71 ISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERM----RPTLFRLASDTEDND----EALAEILQ 142 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHH----HHHHHHHHHHCCSCH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHH----HHHHHHHHHHccCCH----HHHHHHHH
Confidence 34455577777777787878888877777544 889999999999753 34566665443 345 34577777
Q ss_pred HHHHHHHHHHHHhHhh
Q 021476 284 CASTMNELVDKFNTAY 299 (312)
Q Consensus 284 ~~~~l~~l~~K~~~~~ 299 (312)
.-..|+.++.||....
T Consensus 143 ~ND~Ln~vl~kY~~~~ 158 (186)
T 1oxz_A 143 ANDNLTQVINLYKQLV 158 (186)
T ss_dssp HHHHHHHHHHHHTTHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7788888888886543
No 19
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=31.51 E-value=61 Score=24.66 Aligned_cols=81 Identities=10% Similarity=0.211 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-CCChHHHHHHHHHHhcCCCCChHHHHHHHHHhh-chHHHHHHHHHHH
Q 021476 205 AHLTGIHSAIKMLNSRIRVLHHYLVAMQKGEI-PCENSLLRQVSSLLRRLPAIESEKFQDDFLMEY-NDTLLIAYLAMFT 282 (312)
Q Consensus 205 ~~l~~~~~ai~~L~~~i~~i~~Yl~~V~~G~~-~~d~~ilR~i~~l~~~lP~~~~~~f~~~~~~~~-~D~lmi~yLs~lt 282 (312)
..|+.+.+.++.|..| |.....|.. +.|.+++..|...|.+. .+.+.+...... +| .+|+.+.
T Consensus 8 ~eLe~V~~n~~LL~EM-------L~~~~pg~~~~~d~ell~ELy~~ck~~----qp~i~kL~~e~~ddd----e~l~elL 72 (111)
T 1wr6_A 8 HTLEEVNNNVRLLSEM-------LLHYSQEDSSDGDRELMKELFDQCENK----RRTLFKLASETEDND----NSLGDIL 72 (111)
T ss_dssp CCHHHHHHHHHHHHHH-------TTTCCTTTSCHHHHHHHHHHHHHHHHH----HHHHHHHHHTCCTTC----SSHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHhcCCCCCCcchHHHHHHHHHHHHHH----HHHHHHHHHHhccCH----HHHHHHH
Confidence 3455555555554444 445555554 45668999999999753 235556554432 34 2357777
Q ss_pred HHHHHHHHHHHHHhHhhh
Q 021476 283 NCASTMNELVDKFNTAYD 300 (312)
Q Consensus 283 k~~~~l~~l~~K~~~~~~ 300 (312)
+.-..|+.++.||.....
T Consensus 73 ~~ND~ln~vi~rY~~~~~ 90 (111)
T 1wr6_A 73 QASDNLSRVINSYKTIIE 90 (111)
T ss_dssp HHHHHHHHHHTHHHHTTT
T ss_pred HHhHHHHHHHHHHHHHhc
Confidence 778888888888866533
No 20
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=29.62 E-value=69 Score=26.36 Aligned_cols=56 Identities=13% Similarity=0.375 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHhcCCCCChHHHHHHHHHhhchHHHHHHHHHH
Q 021476 219 SRIRVLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLIAYLAMF 281 (312)
Q Consensus 219 ~~i~~i~~Yl~~V~~G~~~~d~~ilR~i~~l~~~lP~~~~~~f~~~~~~~~~D~lmi~yLs~l 281 (312)
.-++.|-.+|+-..+|.+| +-.|=+.+.+++..+| ++.+.+.. +...-+ |.||..-
T Consensus 76 giL~~l~~WLePLpDgSLP-~~~Ir~~lL~~L~~lP-I~~e~Lk~---SglGkv--V~~l~k~ 131 (170)
T 3nfq_A 76 NLLQSVRIWLEPLPDGSLP-SFEIQKSLFAALNDLP-VKTEHLKE---SGLGRV--VIFYTKS 131 (170)
T ss_dssp THHHHHHHHHSCCTTSCCC-CHHHHHHHHHHHHTSC-CCHHHHHH---HSHHHH--HHHHHHC
T ss_pred chHHHHHHHhCcCCCCCCC-cHHHHHHHHHHHHHCC-CCHHHHhh---CCCCce--eeehhcC
Confidence 4567788889999999876 9999999999999999 77665543 333333 3455544
No 21
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=25.98 E-value=1.5e+02 Score=19.97 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=22.5
Q ss_pred HHHHHHhhhcCCCCCChHHHHHHHHHHhcCCC
Q 021476 224 LHHYLVAMQKGEIPCENSLLRQVSSLLRRLPA 255 (312)
Q Consensus 224 i~~Yl~~V~~G~~~~d~~ilR~i~~l~~~lP~ 255 (312)
+.+++++...++. ...+|...+..+|+.+|.
T Consensus 11 ~v~~i~~~l~~~~-t~~~I~~~l~~~C~~lp~ 41 (80)
T 3bqp_A 11 LVGYLDRNLEKNS-TKQEILAALEKGCSFLPD 41 (80)
T ss_dssp HHHHHHHHSCTTC-CHHHHHHHHHHHGGGSCG
T ss_pred HHHHHHHHHHccc-HHHHHHHHHHHHHHhCCC
Confidence 5556666555432 356899999999999996
No 22
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=21.68 E-value=2.9e+02 Score=21.63 Aligned_cols=86 Identities=13% Similarity=0.239 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC--ChHHHHHHHHHHhcCCCCChHHHHHHHHHh-hchHHHHHHHHHHHH
Q 021476 207 LTGIHSAIKMLNSRIRVLHHYLVAMQKGEIPC--ENSLLRQVSSLLRRLPAIESEKFQDDFLME-YNDTLLIAYLAMFTN 283 (312)
Q Consensus 207 l~~~~~ai~~L~~~i~~i~~Yl~~V~~G~~~~--d~~ilR~i~~l~~~lP~~~~~~f~~~~~~~-~~D~lmi~yLs~ltk 283 (312)
+......+..++..++.+-+-|.....|+..+ |.+++..|.+.|.+. .+.+.+..... .+| .+|..+.+
T Consensus 46 ~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~----qp~i~~li~e~~dde----e~l~elL~ 117 (140)
T 1o3x_A 46 ISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERM----RPTLFRLASDTEDND----EALAEILQ 117 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHH----HHHHHHHHTTCTTCH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHH----HHHHHHHHHHccCCH----HHHHHHHH
Confidence 33444566667777777777777777777654 689999999999753 34566655443 344 33566667
Q ss_pred HHHHHHHHHHHHhHhhh
Q 021476 284 CASTMNELVDKFNTAYD 300 (312)
Q Consensus 284 ~~~~l~~l~~K~~~~~~ 300 (312)
.-..|+.++.||.....
T Consensus 118 ~ND~ln~vl~kY~~~~~ 134 (140)
T 1o3x_A 118 ANDNLTQVINLYKQLVR 134 (140)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 77778888888865543
No 23
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=21.60 E-value=2e+02 Score=19.73 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=23.3
Q ss_pred HHHHHHHhhhcCCCCCChHHHHHHHHHHhcCCC
Q 021476 223 VLHHYLVAMQKGEIPCENSLLRQVSSLLRRLPA 255 (312)
Q Consensus 223 ~i~~Yl~~V~~G~~~~d~~ilR~i~~l~~~lP~ 255 (312)
.+.+++++....+ ....+|...+..+|+.+|.
T Consensus 9 ~iv~~ve~~l~~~-~t~~~I~~~l~~~C~~lp~ 40 (78)
T 1nkl_A 9 KIIQKLEDMVGPQ-PNEDTVTQAASQVCDKLKI 40 (78)
T ss_dssp HHHHHHHHHHCSS-CCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHcC-CcHHHHHHHHHHHHhhCch
Confidence 3556666655333 2467999999999999997
Done!