BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021478
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 141 SHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATM 200
SH G P+ R + +P++L +AL +F R+++G W+ I +D
Sbjct: 304 SHTDVGTSPLFRYNLVPFELKDWKIALAELF-------RYINGTDCWSTIYLENHDQPRS 356
Query: 201 VIS-GTDNSTDECIKDSLLRYIMA 223
+ G D+ + I LL +++
Sbjct: 357 ITRFGDDSPKNRVISGKLLSVLLS 380
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 141 SHLLPGFLPVLRASSLPYQLTAPALALLLVFRTEASYSRFVDGKKAWTQIIAGTNDFATM 200
SH G P+ R + +P++L +AL +F R+++G W+ I +D
Sbjct: 304 SHTDVGTSPLFRYNLVPFELKDWKIALAELF-------RYINGTDCWSTIYLENHDQPRS 356
Query: 201 VIS-GTDNSTDECIKDSLLRYIMA 223
+ G D+ + I LL +++
Sbjct: 357 ITRFGDDSPKNRVISGKLLSVLLS 380
>pdb|3IZ3|B Chain B, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3IZ3|C Chain C, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
pdb|3J17|B Chain B, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
pdb|3J17|C Chain C, Structure Of A Transcribing Cypovirus By Cryo-Electron
Microscopy
Length = 1333
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 16 FIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQSQSETKTLTLISVLRAI-PDWAD 74
F P+ L+ FP S NP T+ + +Q T T S R I A+
Sbjct: 607 FTPQGFLRTDDLAIAANFPRASRNPQTY-----IPYTNQRGTVTNEFASRFRTIVATLAN 661
Query: 75 RVKERGVK---QKRTLYSHEKWVEH 96
V ER V+ QK T ++W+ H
Sbjct: 662 VVNERAVQDDMQKATRSCTKQWLRH 686
>pdb|3CNF|A Chain A, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3CNF|B Chain B, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
By Cryo-Electron Microscopy
pdb|3IZX|B Chain B, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
pdb|3IZX|C Chain C, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
Virus
Length = 1333
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 16 FIPKTLLKLQPSITTLTFPSKSPNPLTFKTLSCLESQSQSETKTLTLISVLRAI-PDWAD 74
F P+ L+ FP S NP T+ + +Q T T S R I A+
Sbjct: 607 FTPQGFLRTDDLAIAANFPRASRNPQTY-----IPYTNQRGTVTNEFASRFRTIVATLAN 661
Query: 75 RVKERGVK---QKRTLYSHEKWVEH 96
V ER V+ QK T ++W+ H
Sbjct: 662 VVNERAVQDDMQKATRSCTKQWLRH 686
>pdb|3HP0|A Chain A, Crystal Structure Of A Putative Polyketide Biosynthesis
Enoyl-Coa Hydratase (Pksh) From Bacillus Subtilis
pdb|3HP0|B Chain B, Crystal Structure Of A Putative Polyketide Biosynthesis
Enoyl-Coa Hydratase (Pksh) From Bacillus Subtilis
pdb|3HP0|C Chain C, Crystal Structure Of A Putative Polyketide Biosynthesis
Enoyl-Coa Hydratase (Pksh) From Bacillus Subtilis
pdb|3HP0|D Chain D, Crystal Structure Of A Putative Polyketide Biosynthesis
Enoyl-Coa Hydratase (Pksh) From Bacillus Subtilis
pdb|3HP0|E Chain E, Crystal Structure Of A Putative Polyketide Biosynthesis
Enoyl-Coa Hydratase (Pksh) From Bacillus Subtilis
pdb|3HP0|F Chain F, Crystal Structure Of A Putative Polyketide Biosynthesis
Enoyl-Coa Hydratase (Pksh) From Bacillus Subtilis
Length = 267
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 22 LKLQPSITTLTFPSKSPNPLTFKTL--SCLESQSQSETKTLTLISVLRAIPD 71
++ Q S+ +TF N TL CL+ +Q ET T+T++ VL +P+
Sbjct: 11 VRFQASVCYITFHRPEANNTINDTLIEECLQVLNQCETSTVTVV-VLEGLPE 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,132,844
Number of Sequences: 62578
Number of extensions: 223906
Number of successful extensions: 466
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 5
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)