Query 021478
Match_columns 312
No_of_seqs 179 out of 655
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 04:43:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_T 40S ribosomal protein S 28.1 14 0.00049 31.1 0.4 36 60-96 16-56 (144)
2 2zt9_E Cytochrome B6-F complex 26.1 28 0.00096 21.9 1.4 14 160-173 14-27 (31)
3 2xzm_T RPS19E; ribosome, trans 25.1 19 0.00066 30.6 0.7 27 68-96 33-59 (155)
4 1vf5_E Protein PET L; photosyn 24.5 29 0.001 22.0 1.2 14 160-173 15-28 (32)
5 3iz6_S 40S ribosomal protein S 16.9 32 0.0011 29.0 0.3 27 68-96 32-58 (146)
6 2eth_A Transcriptional regulat 15.4 4E+02 0.014 20.5 6.9 49 181-233 106-154 (154)
7 3vea_B MATP, macrodomain TER p 15.2 83 0.0028 26.4 2.4 53 220-273 11-63 (151)
8 2yka_B ORF57 protein, 52 kDa i 18.5 37 0.0013 20.2 0.0 12 69-80 8-19 (26)
9 3qk9_A Mitochondrial import in 12.3 2.1E+02 0.0073 25.2 4.4 82 171-255 16-117 (222)
10 3arc_H Photosystem II reaction 12.1 1E+02 0.0035 22.4 1.8 15 157-171 26-40 (65)
No 1
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=28.11 E-value=14 Score=31.06 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=26.3
Q ss_pred HHHHHHHh-----hCCCchhhhhhhhccccCCCCChhHHHhh
Q 021478 60 LTLISVLR-----AIPDWADRVKERGVKQKRTLYSHEKWVEH 96 (312)
Q Consensus 60 ~~~~~~~~-----~~~~~~d~~~E~~~~~rr~~y~~~~W~~H 96 (312)
+++.+-|+ .+|+|+|-+|= +...-+..||.|+|..-
T Consensus 16 ~~~A~~LK~~gki~~P~W~d~vKT-g~~kEl~P~d~D~W~Y~ 56 (144)
T 3u5c_T 16 NAYASFLQRQGKLEVPGYVDIVKT-SSGNEMPPQDAEGWFYK 56 (144)
T ss_dssp HHHHHHHHHHCCCCCTTTTTSCCS-CTTCSSCCSSCSSSHHH
T ss_pred HHHHHHHHHcCCCCCCchHhHhhc-cccccCCCCCCcchHHH
Confidence 44455554 47999999996 56677779999879744
No 2
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=26.13 E-value=28 Score=21.93 Aligned_cols=14 Identities=36% Similarity=0.453 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHhcc
Q 021478 160 LTAPALALLLVFRT 173 (312)
Q Consensus 160 LlG~ALsLLLvFRt 173 (312)
.+|+|+|+++++|.
T Consensus 14 ~~~iA~GL~fGLrs 27 (31)
T 2zt9_E 14 FTGIAAGLLFGLRS 27 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 48899999999984
No 3
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=25.08 E-value=19 Score=30.62 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=20.6
Q ss_pred hCCCchhhhhhhhccccCCCCChhHHHhh
Q 021478 68 AIPDWADRVKERGVKQKRTLYSHEKWVEH 96 (312)
Q Consensus 68 ~~~~~~d~~~E~~~~~rr~~y~~~~W~~H 96 (312)
.+|+|+|-+|= +...-+..||. ||..-
T Consensus 33 ~~P~W~d~vKT-g~~KElaP~d~-DW~Yi 59 (155)
T 2xzm_T 33 SIPEFTQWTTT-SVARELAPQDS-DWVYI 59 (155)
T ss_dssp CCCHHHHSCCC-SSSCSSCCSST-THHHH
T ss_pred CCCchHhhhhc-cccccCCCCCC-chHHH
Confidence 47999999996 56666778985 58744
No 4
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=24.52 E-value=29 Score=21.99 Aligned_cols=14 Identities=7% Similarity=0.365 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHhcc
Q 021478 160 LTAPALALLLVFRT 173 (312)
Q Consensus 160 LlG~ALsLLLvFRt 173 (312)
.+|.|+||++++|.
T Consensus 15 ~f~iA~GL~fGlrs 28 (32)
T 1vf5_E 15 FFGIAVGIIFAIKS 28 (32)
T ss_dssp HHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 48899999999985
No 5
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=16.89 E-value=32 Score=29.00 Aligned_cols=27 Identities=26% Similarity=0.587 Sum_probs=20.3
Q ss_pred hCCCchhhhhhhhccccCCCCChhHHHhh
Q 021478 68 AIPDWADRVKERGVKQKRTLYSHEKWVEH 96 (312)
Q Consensus 68 ~~~~~~d~~~E~~~~~rr~~y~~~~W~~H 96 (312)
.+|+|+|-+|= +...-+..||. ||..-
T Consensus 32 ~~P~W~d~vKT-g~~KEl~P~d~-DW~Y~ 58 (146)
T 3iz6_S 32 ELPEWVDIVKT-ARFKELPPYDP-DWYYT 58 (146)
T ss_dssp CCTTTGGGCCS-SSSCSSSTHHH-HTHHH
T ss_pred CCCchHHHhhc-cccccCCCCCC-chHHH
Confidence 36999999996 56666678887 58643
No 6
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=15.35 E-value=4e+02 Score=20.46 Aligned_cols=49 Identities=14% Similarity=0.064 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHhccc
Q 021478 181 VDGKKAWTQIIAGTNDFATMVISGTDNSTDECIKDSLLRYIMAFPVALKGHVI 233 (312)
Q Consensus 181 WEARKlWG~IVn~SRnLaR~~~~~i~~~~d~~~~~~l~r~~iAF~~ALK~hLR 233 (312)
-+|+++...+......+...+..-++ +++.+.+.+.+-.+...++.++|
T Consensus 106 ~~G~~~~~~~~~~~~~~~~~~~~~l~----~ee~~~l~~~L~~l~~~l~~~~r 154 (154)
T 2eth_A 106 EKGKEIFGEILSNFESLLKSVLEKFS----EEDFKVVSEGFNRMVEALSREGR 154 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC----HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHccC
Confidence 46777777777777777777665553 56677788888777777777665
No 7
>3vea_B MATP, macrodomain TER protein; macrodomains, chromosome, DNA condensation; 2.55A {Yersinia pestis} PDB: 3veb_B 4d8j_B
Probab=15.21 E-value=83 Score=26.39 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcccCCCCCchhhhhcCCHHHHHHHhcCCChHHHHHHHHHHHHh
Q 021478 220 YIMAFPVALKGHVICDSDVSGDLQDLLDADDLAIVLDSKHRPRCIIEFISQSLQ 273 (312)
Q Consensus 220 ~~iAF~~ALK~hLR~~~d~~~eL~~lL~~eele~l~~~~n~P~~il~~ls~~L~ 273 (312)
.-+-|.|.+|.|=-| +.+..-+..-+.++-++.+....|-|..|+.+|.+.+.
T Consensus 11 ~gWKW~YLvkK~reG-E~ITry~e~S~a~~aV~~L~~le~~P~~v~~WI~~hm~ 63 (151)
T 3vea_B 11 SGWKWAYLVKKHREG-EAITRHIENSAAQDAVEQLMKLENEPVKVQEWIDAHMN 63 (151)
T ss_dssp HHHHHHHHHHHHHTT-CCCBSCSSHHHHHHHHHHTTTCTTCHHHHHHHHHHHBC
T ss_pred hcchHHHHHHHhhcc-CcchHHHHhhHHHHHHHHHHHhccChHHHHHHHHHhcC
Confidence 345677888988654 34443333334456677788999999999999988654
No 8
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=18.54 E-value=37 Score=20.19 Aligned_cols=12 Identities=50% Similarity=0.947 Sum_probs=10.0
Q ss_pred CCCchhhhhhhh
Q 021478 69 IPDWADRVKERG 80 (312)
Q Consensus 69 ~~~~~d~~~E~~ 80 (312)
-|.|+|.+.|..
T Consensus 8 r~nWs~RV~E~~ 19 (26)
T 2yka_B 8 KTSWADRVREAA 19 (26)
Confidence 578999999964
No 9
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=12.26 E-value=2.1e+02 Score=25.22 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=42.8
Q ss_pred hccc-hhhhhhHHHHHH-HHH----HHHHHHHHHHHHHhcCCCCCchH------------HHHHHHHH-HHH-HHHHHHh
Q 021478 171 FRTE-ASYSRFVDGKKA-WTQ----IIAGTNDFATMVISGTDNSTDEC------------IKDSLLRY-IMA-FPVALKG 230 (312)
Q Consensus 171 FRtN-tAYdRwWEARKl-WG~----IVn~SRnLaR~~~~~i~~~~d~~------------~~~~l~r~-~iA-F~~ALK~ 230 (312)
||.| .-|.|+-+-|.- |.. +|..+|+++..+-.++.+.+-.+ ....+++- -.+ ++..+.+
T Consensus 16 fk~~~~~~~~~~~~k~~~~~es~np~i~~~r~itd~v~~~f~~te~a~~l~~Ik~~DPsF~~~~Fl~~a~~ai~p~Il~A 95 (222)
T 3qk9_A 16 FKEKTVVGRSIQSLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMDPTFSNESFTRHLREYIVPEILEA 95 (222)
T ss_dssp -----------CHHHHHHHHHCCCHHHHHHHHHCC---------CCHHHHTTCC-----CCHHHHHHHHHHTHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHhhhcccccCHHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5655 445778888876 886 89999999988765554221100 12344443 234 4667888
Q ss_pred cccCCCCCchhhhhcCCHHHHHHHh
Q 021478 231 HVICDSDVSGDLQDLLDADDLAIVL 255 (312)
Q Consensus 231 hLR~~~d~~~eL~~lL~~eele~l~ 255 (312)
.++|+ .+.|+.+|+++-++.+.
T Consensus 96 f~~GD---~~~Lk~llse~~y~~f~ 117 (222)
T 3qk9_A 96 YVKGD---VKVLKKWFSEAPFNVYA 117 (222)
T ss_dssp HHHTC---HHHHHHHBCHHHHHHHH
T ss_pred HHcCC---HHHHHhhcCHHHHHHHH
Confidence 89864 56899999998776543
No 10
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=12.05 E-value=1e+02 Score=22.43 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=12.6
Q ss_pred hhhhHHHHHHHHHHh
Q 021478 157 PYQLTAPALALLLVF 171 (312)
Q Consensus 157 p~sLlG~ALsLLLvF 171 (312)
.-.++|+++++|.||
T Consensus 26 TtplMgv~m~Lf~vF 40 (65)
T 3arc_H 26 TTPLMAVFMGLFLVF 40 (65)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 345799999999998
Done!