BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021479
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RON|A Chain A, The External Thioesterase Of The Surfactin-Synthetase
pdb|2K2Q|B Chain B, Complex Structure Of The External Thioesterase Of The
Surfactin-Synthetase With A Carrier Domain
Length = 242
Score = 34.3 bits (77), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 11/124 (8%)
Query: 93 EQVEHKMDFIRQELQ-NTEVPIVLVGHSIGAYVALEMLKRSSEKVIYYIGLYPFLALIRP 151
E +E D +QEL + P VL GHS+G + + ++ + G++P A+I
Sbjct: 59 EDLEELTDLYKQELNLRPDRPFVLFGHSMGGMITFRLAQKLERE-----GIFP-QAVIIS 112
Query: 152 SVTQSIIGRVAASNIASTALSYIIASLGILPSKALRFLVSNSLGRSWSATAVEAACTHLS 211
++ I R S++ I LG +P++ LV N S+ + + L
Sbjct: 113 AIQPPHIQRKKVSHLPDDQFLDHIIQLGGMPAE----LVENKEVMSFFLPSFRSDYRALE 168
Query: 212 QYHV 215
Q+ +
Sbjct: 169 QFEL 172
>pdb|4ETS|A Chain A, Crystal Structure Of Campylobacter Jejuni Ferric Uptake
Regulator
pdb|4ETS|B Chain B, Crystal Structure Of Campylobacter Jejuni Ferric Uptake
Regulator
Length = 162
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 215 VMRNVLFMTMTE-FKQLKNTPDWAFMRENQSKIAFLFGVDDHWGPQELYEEISEQVPDVP 273
++ NV + + E FK++ + ++ + + L+ D H+ P+ LY EI + PD+
Sbjct: 7 LIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLN 66
Query: 274 LAI 276
+ I
Sbjct: 67 VGI 69
>pdb|3BDV|A Chain A, Crystal Structure Of A Putative Yden-Like Hydrolase
(Eca3091) From Pectobacterium Atrosepticum Scri1043 At
1.66 A Resolution
pdb|3BDV|B Chain B, Crystal Structure Of A Putative Yden-Like Hydrolase
(Eca3091) From Pectobacterium Atrosepticum Scri1043 At
1.66 A Resolution
Length = 191
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 102 IRQELQNTEVPIVLVGHSIGAYVALEMLKRSSEKV 136
IR+EL P++L+GHS GA A ++++ E +
Sbjct: 65 IRRELSVCTQPVILIGHSFGALAACHVVQQGQEGI 99
>pdb|2I0K|A Chain A, Cholesterol Oxidase From Brevibacterium Sterolicum-
His121ala Mutant
Length = 561
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 11 NKSVNLRLSNVSIYTAEVLEIEADDPK------LHVLFVPGNPGVITFYKDFVQSLYEH 63
+++ ++++ +V T D P L+VL VPG PG+ FY++ Q + H
Sbjct: 430 DQAADVKVPSVGPPTISATRPRPDHPDWDVAIWLNVLGVPGTPGMFEFYREMEQWMRSH 488
>pdb|1I19|A Chain A, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
pdb|1I19|B Chain B, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
Length = 561
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 11 NKSVNLRLSNVSIYTAEVLEIEADDPK------LHVLFVPGNPGVITFYKDFVQSLYEH 63
+++ ++++ +V T D P L+VL VPG PG+ FY++ Q + H
Sbjct: 430 DQAADVKVPSVGPPTISATRPRPDHPDWDVAIWLNVLGVPGTPGMFEFYREMEQWMRSH 488
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 114 VLVGHSIGAYVALEMLK-----RSSEKVIYYIGLYPFLALIRPSVTQSIIGRVA------ 162
GHS+G Y AL L S +V++Y G+ +A+ R + +S G +A
Sbjct: 1803 TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1862
Query: 163 ASNIASTALSYIIASLG 179
A++ + AL Y++ +G
Sbjct: 1863 AASFSQEALQYVVERVG 1879
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 114 VLVGHSIGAYVALEMLK-----RSSEKVIYYIGLYPFLALIRPSVTQSIIGRVA------ 162
GHS+G Y AL L S +V++Y G+ +A+ R + +S G +A
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV 1817
Query: 163 ASNIASTALSYIIASLG 179
A++ + AL Y++ +G
Sbjct: 1818 AASFSQEALQYVVERVG 1834
>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
By Mixed Micelles Revealed By X-Ray Crystallography
pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
Lipase Colipase Complex Inhibited By A C11 Alkyl
Phosphonate
pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
Length = 449
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 21/141 (14%)
Query: 94 QVEHKMDFIRQELQNTEVPIVLVGHSIGAYVALEMLKRSSEKVIYYIGLYPF-------- 145
+V + ++F++ + + ++GHS+GA+ A E +R++ + GL P
Sbjct: 128 EVAYFVEFLQSAFGYSPSNVHVIGHSLGAHAAGEAGRRTNGTIGRITGLDPAEPCFQGTP 187
Query: 146 -LALIRPSVTQ--SIIGRVAASNIASTA--LSYIIASLGILPSKALRF--LVSNSLGRS- 197
L + PS + +I A + + +S ++ L P+ + N L +
Sbjct: 188 ELVRLDPSDAKFVDVIHTDGAPIVPNLGFGMSQVVGHLDFFPNGGVEMPGCKKNILSQIV 247
Query: 198 -----WSATAVEAACTHLSQY 213
W T AAC HL Y
Sbjct: 248 DIDGIWEGTRDFAACNHLRSY 268
>pdb|3L80|A Chain A, Crystal Structure Of Smu.1393c From Streptococcus Mutans
Ua159
pdb|3L80|B Chain B, Crystal Structure Of Smu.1393c From Streptococcus Mutans
Ua159
Length = 292
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 114 VLVGHSIGAYVALEMLKRSSEKVIYYIGLYP 144
+L HSIG + AL++ +SS+ + +IGL P
Sbjct: 113 LLCVHSIGGFAALQIXNQSSKACLGFIGLEP 143
>pdb|1RU7|A Chain A, 1934 Human H1 Hemagglutinin
pdb|1RU7|C Chain C, 1934 Human H1 Hemagglutinin
pdb|1RU7|E Chain E, 1934 Human H1 Hemagglutinin
pdb|1RU7|G Chain G, 1934 Human H1 Hemagglutinin
pdb|1RU7|I Chain I, 1934 Human H1 Hemagglutinin
pdb|1RU7|K Chain K, 1934 Human H1 Hemagglutinin
Length = 327
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 197 SW---SATAVEAACTHLSQYHVMRNVLFMTMTE--FKQLKNTPDWAFMRENQSKIAFLFG 251
SW + V AAC+H + RN+L++T E + +LKN +++ + ++ L+G
Sbjct: 126 SWPNHNTNGVTAACSHEGKSSFYRNLLWLTEKEGSYPKLKN----SYVNKKGKEVLVLWG 181
Query: 252 V 252
+
Sbjct: 182 I 182
>pdb|1RVX|A Chain A, 1934 H1 Hemagglutinin In Complex With Lsta
pdb|1RVX|C Chain C, 1934 H1 Hemagglutinin In Complex With Lsta
pdb|1RVX|E Chain E, 1934 H1 Hemagglutinin In Complex With Lsta
pdb|1RVX|G Chain G, 1934 H1 Hemagglutinin In Complex With Lsta
pdb|1RVX|I Chain I, 1934 H1 Hemagglutinin In Complex With Lsta
pdb|1RVX|K Chain K, 1934 H1 Hemagglutinin In Complex With Lsta
pdb|1RVZ|A Chain A, 1934 H1 Hemagglutinin In Complex With Lstc
pdb|1RVZ|C Chain C, 1934 H1 Hemagglutinin In Complex With Lstc
pdb|1RVZ|E Chain E, 1934 H1 Hemagglutinin In Complex With Lstc
pdb|1RVZ|G Chain G, 1934 H1 Hemagglutinin In Complex With Lstc
pdb|1RVZ|I Chain I, 1934 H1 Hemagglutinin In Complex With Lstc
pdb|1RVZ|K Chain K, 1934 H1 Hemagglutinin In Complex With Lstc
Length = 327
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 197 SW---SATAVEAACTHLSQYHVMRNVLFMTMTE--FKQLKNTPDWAFMRENQSKIAFLFG 251
SW + V AAC+H + RN+L++T E + +LKN +++ + ++ L+G
Sbjct: 126 SWPNHNTNGVTAACSHEGKSSFYRNLLWLTEKEGSYPKLKN----SYVNKKGKEVLVLWG 181
Query: 252 V 252
+
Sbjct: 182 I 182
>pdb|1QWZ|A Chain A, Crystal Structure Of Sortase B From S. Aureus Complexed
With Mtset
pdb|1QXA|A Chain A, Crystal Structure Of Sortase B Complexed With Gly3
Length = 235
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 78 QTKKNYDHGRLFSLDEQVEHK------MDFIRQELQNTEVPIVLVGHSIGAYVALEMLK 130
Q K N+D+ +LD + EH+ MDF R EL+N +L GH +G ++L+
Sbjct: 79 QGKTNHDY---LNLDFEREHRRKGSIFMDF-RNELKNLNHNTILYGHHVGDNTMFDVLE 133
>pdb|3OG9|A Chain A, Structure Of Yahd With Malic Acid
pdb|3OG9|B Chain B, Structure Of Yahd With Malic Acid
Length = 209
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 79 TKKNYDHGRLFSLDEQVEHKMDFIR--QELQNTEV-PIVLVGHSIGAYVALEMLKRSS-- 133
TK+N+D L SLDE+ + D + E + +V ++ +G+S GA VAL M R
Sbjct: 70 TKENFD---LESLDEETDWLTDEVSLLAEKHDLDVHKMIAIGYSNGANVALNMFLRGKIN 126
Query: 134 -EKVIYYIGL 142
+K+I + G+
Sbjct: 127 FDKIIAFHGM 136
>pdb|3GFF|A Chain A, Crystal Structure Of Iroe-Like Serine Hydrolase
(Np_718593.1) From Shewanella Oneidensis At 2.12 A
Resolution
pdb|3GFF|B Chain B, Crystal Structure Of Iroe-Like Serine Hydrolase
(Np_718593.1) From Shewanella Oneidensis At 2.12 A
Resolution
Length = 331
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 99 MDFIRQELQ-------NTEVPIVLVGHSIGAYVALEMLKRSSEKVIYYIGLYPFLALIRP 151
+DFI +EL T VLVGHS G VA E L+ Y+ L L P
Sbjct: 118 LDFIEKELAPSIESQLRTNGINVLVGHSFGGLVAXEALRTDRPLFSAYLALDTSLWFDSP 177
Query: 152 SVTQSIIGRVAASNIASTALSYIIASLGILPS 183
+ RV + L IA+ + P
Sbjct: 178 HYLTLLEERVVKGDFKQKQLFXAIANNPLSPG 209
>pdb|1NG5|A Chain A, 2.0 A Crystal Structure Of Staphylococcus Aureus Sortase B
pdb|1NG5|B Chain B, 2.0 A Crystal Structure Of Staphylococcus Aureus Sortase B
Length = 215
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 78 QTKKNYDHGRLFSLDEQVEHK------MDFIRQELQNTEVPIVLVGHSIGAYVALEMLK 130
Q K N+D+ +LD + EH+ MDF R EL+N +L GH +G ++L+
Sbjct: 59 QGKTNHDY---LNLDFEREHRRKGSIFMDF-RNELKNLNHNTILYGHHVGDNTMFDVLE 113
>pdb|4DNX|A Chain A, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
pdb|4DNX|B Chain B, The Structure Of The Atp Sulfurylase From Allochromatium
Vinosum In The Open State
Length = 397
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 200 ATAVEAACTHLSQYHVMRNVLFMTMTEFKQLKNTPD----WAFMRENQSKIAFLFGVD-- 253
A +AA +++ + N + +T F L P A+ R+N F+ G D
Sbjct: 240 APVRDAAIRTMAELYFPPNTVMVTGYGFDMLYAGPREAVLHAYFRQNMGATHFIIGRDHA 299
Query: 254 ---DHWGPQELYEEISEQVPDVPLAIE 277
D++GP + + VP LAIE
Sbjct: 300 GVGDYYGPFDAQTIFDDAVPTDVLAIE 326
>pdb|3GYQ|A Chain A, Structure Of The Thiostrepton-Resistance Methyltransferase
S-Adenosyl-L-Methionine Complex
pdb|3GYQ|B Chain B, Structure Of The Thiostrepton-Resistance Methyltransferase
S-Adenosyl-L-Methionine Complex
Length = 272
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 241 ENQSKIAFLFGVDDHWGPQELYEEISEQVPDVPL 274
+N ++A LFG + GP +L+EE S +P+
Sbjct: 211 DNPDRLALLFG-SEKGGPSDLFEEASSASVSIPM 243
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 98 KMDFIRQELQNTEVPIVLVGHSIGAYVALEMLKRSSEKV 136
++D + QEL + P++LVGHS+GA +A + +K+
Sbjct: 84 QIDRVIQELPDQ--PLLLVGHSMGAMLATAIASVRPKKI 120
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 15/90 (16%)
Query: 101 FIRQELQNTE--------VPIVLVGHSIGAYVALEMLKRSSEKVIYYIGLYPFLALIRPS 152
F+R LQ+ + +P+ L+GHS+G +A + ++E+ ++ G + LI P
Sbjct: 114 FVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIA---ILTAAERPGHFAG----MVLISPL 166
Query: 153 VTQSIIGRVAASNIASTALSYIIASLGILP 182
V + +A+ L+ ++ +L + P
Sbjct: 167 VLANPESATTFKVLAAKVLNLVLPNLSLGP 196
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 15/90 (16%)
Query: 101 FIRQELQNTE--------VPIVLVGHSIGAYVALEMLKRSSEKVIYYIGLYPFLALIRPS 152
F+R LQ+ + +P+ L+GHS+G +A + ++E+ ++ G + LI P
Sbjct: 113 FVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIA---ILTAAERPGHFAG----MVLISPL 165
Query: 153 VTQSIIGRVAASNIASTALSYIIASLGILP 182
V + +A+ L+ ++ +L + P
Sbjct: 166 VLANPESATTFKVLAAKVLNLVLPNLSLGP 195
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,445,745
Number of Sequences: 62578
Number of extensions: 310067
Number of successful extensions: 988
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 978
Number of HSP's gapped (non-prelim): 26
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)