Query 021480
Match_columns 312
No_of_seqs 156 out of 2147
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 04:45:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.5 3.7E-14 1.3E-18 124.1 6.8 193 3-220 80-288 (328)
2 2z80_A TOLL-like receptor 2, v 99.2 9.7E-11 3.3E-15 103.2 14.1 182 18-222 43-235 (353)
3 2z80_A TOLL-like receptor 2, v 99.2 3.2E-11 1.1E-15 106.3 9.7 251 4-268 52-329 (353)
4 2z81_A CD282 antigen, TOLL-lik 99.2 3.4E-11 1.1E-15 112.4 8.9 212 4-220 26-262 (549)
5 2z81_A CD282 antigen, TOLL-lik 99.2 4.3E-10 1.5E-14 104.8 15.6 237 16-280 15-261 (549)
6 4fcg_A Uncharacterized protein 99.2 3.3E-12 1.1E-16 111.7 0.7 192 4-219 104-311 (328)
7 4fmz_A Internalin; leucine ric 99.2 1.6E-11 5.5E-16 107.9 5.1 76 5-86 45-120 (347)
8 2ast_B S-phase kinase-associat 99.2 8.3E-13 2.8E-17 115.6 -3.2 184 4-220 70-258 (336)
9 3ogk_B Coronatine-insensitive 99.1 9.5E-11 3.2E-15 110.3 7.9 62 26-87 161-231 (592)
10 1ogq_A PGIP-2, polygalacturona 99.1 2E-11 6.8E-16 106.0 3.0 238 4-280 50-301 (313)
11 1z7x_W Ribonuclease inhibitor; 99.1 1.7E-12 5.7E-17 118.6 -4.9 208 5-219 4-237 (461)
12 1ozn_A Reticulon 4 receptor; N 99.1 2.1E-11 7.3E-16 104.2 1.4 223 11-265 16-250 (285)
13 2ca6_A RAN GTPase-activating p 99.1 1.7E-11 5.7E-16 109.5 0.5 248 19-281 22-314 (386)
14 3zyi_A Leucine-rich repeat-con 99.1 4.1E-11 1.4E-15 109.3 2.9 191 4-220 75-277 (452)
15 3ogk_B Coronatine-insensitive 99.1 1.7E-10 5.8E-15 108.6 7.0 238 21-281 262-524 (592)
16 3rgz_A Protein brassinosteroid 99.1 1.4E-10 4.6E-15 112.8 6.5 68 20-87 284-354 (768)
17 1o6v_A Internalin A; bacterial 99.1 1.3E-10 4.6E-15 106.3 6.0 114 5-124 47-163 (466)
18 2p1m_B Transport inhibitor res 99.1 5.9E-11 2E-15 111.7 3.6 62 25-86 152-221 (594)
19 2ast_B S-phase kinase-associat 99.0 4.9E-11 1.7E-15 104.2 2.7 209 29-280 70-282 (336)
20 1ozn_A Reticulon 4 receptor; N 99.0 7.4E-11 2.5E-15 100.8 3.8 193 5-220 33-236 (285)
21 1z7x_W Ribonuclease inhibitor; 99.0 1E-11 3.6E-16 113.3 -1.7 217 4-220 28-295 (461)
22 3o6n_A APL1; leucine-rich repe 99.0 1.9E-10 6.6E-15 102.7 6.2 235 4-281 93-350 (390)
23 3rgz_A Protein brassinosteroid 99.0 3.1E-11 1.1E-15 117.3 0.9 192 5-219 101-304 (768)
24 1ogq_A PGIP-2, polygalacturona 99.0 4.9E-11 1.7E-15 103.5 2.0 215 29-281 50-279 (313)
25 3zyj_A Leucine-rich repeat-con 99.0 5.4E-11 1.8E-15 108.1 2.0 119 4-126 64-194 (440)
26 3v47_A TOLL-like receptor 5B a 99.0 8.3E-11 2.8E-15 107.1 3.0 35 241-281 370-406 (455)
27 3zyi_A Leucine-rich repeat-con 99.0 1.6E-10 5.4E-15 105.4 4.7 185 12-221 60-254 (452)
28 3oja_B Anopheles plasmodium-re 99.0 2.6E-10 8.9E-15 107.7 5.5 81 4-87 99-182 (597)
29 2id5_A Lingo-1, leucine rich r 99.0 7.1E-10 2.4E-14 101.7 8.2 146 5-164 33-188 (477)
30 3v47_A TOLL-like receptor 5B a 99.0 9.1E-11 3.1E-15 106.9 2.2 83 4-87 54-140 (455)
31 3t6q_A CD180 antigen; protein- 99.0 3.2E-11 1.1E-15 114.0 -1.0 67 20-87 268-336 (606)
32 4fmz_A Internalin; leucine ric 99.0 1.5E-10 5.1E-15 101.7 3.4 230 4-280 110-343 (347)
33 3oja_A Leucine-rich immune mol 99.0 6.9E-11 2.4E-15 108.8 1.1 61 148-220 165-225 (487)
34 1h6u_A Internalin H; cell adhe 99.0 2.2E-10 7.6E-15 99.1 4.1 184 5-220 42-228 (308)
35 3rfs_A Internalin B, repeat mo 99.0 1.3E-10 4.3E-15 98.7 2.5 56 28-86 40-95 (272)
36 3zyj_A Leucine-rich repeat-con 99.0 2.8E-10 9.5E-15 103.4 4.7 182 13-219 50-241 (440)
37 2id5_A Lingo-1, leucine rich r 99.0 5.1E-10 1.7E-14 102.6 6.1 79 5-86 81-162 (477)
38 2o6q_A Variable lymphocyte rec 99.0 1.9E-10 6.5E-15 97.5 2.8 71 14-87 24-96 (270)
39 3o53_A Protein LRIM1, AGAP0063 99.0 4.5E-11 1.5E-15 103.9 -1.2 59 149-219 166-224 (317)
40 1o6v_A Internalin A; bacterial 99.0 5.2E-10 1.8E-14 102.4 5.7 116 4-125 68-185 (466)
41 4ecn_A Leucine-rich repeat pro 98.9 3.9E-10 1.3E-14 110.2 4.8 123 4-127 448-605 (876)
42 3t6q_A CD180 antigen; protein- 98.9 2.3E-10 7.8E-15 108.1 2.6 199 5-221 279-488 (606)
43 4ecn_A Leucine-rich repeat pro 98.9 1.4E-10 5E-15 113.2 0.8 145 5-165 549-710 (876)
44 1xku_A Decorin; proteoglycan, 98.9 7.6E-10 2.6E-14 96.5 5.2 116 4-125 52-179 (330)
45 4eco_A Uncharacterized protein 98.9 9.1E-10 3.1E-14 104.7 5.8 122 4-127 206-363 (636)
46 2z63_A TOLL-like receptor 4, v 98.9 1E-09 3.4E-14 102.8 5.6 223 21-281 297-529 (570)
47 2z63_A TOLL-like receptor 4, v 98.9 1.7E-09 5.8E-14 101.2 6.5 232 5-268 305-547 (570)
48 3bz5_A Internalin-J, INLJ; leu 98.9 7.8E-10 2.7E-14 100.9 3.9 115 4-127 42-158 (457)
49 2z66_A Variable lymphocyte rec 98.9 6.9E-10 2.4E-14 95.7 3.0 189 11-220 12-210 (306)
50 2ca6_A RAN GTPase-activating p 98.9 5.1E-11 1.8E-15 106.3 -4.7 233 4-251 32-312 (386)
51 3m19_A Variable lymphocyte rec 98.9 1.3E-09 4.3E-14 91.4 4.1 71 14-87 22-94 (251)
52 4ezg_A Putative uncharacterize 98.8 1.2E-09 4.2E-14 88.0 3.5 142 27-190 42-190 (197)
53 2p1m_B Transport inhibitor res 98.8 1.6E-09 5.6E-14 101.9 4.8 236 20-278 280-539 (594)
54 4eco_A Uncharacterized protein 98.8 1.9E-10 6.6E-15 109.3 -1.5 146 4-165 305-470 (636)
55 3j0a_A TOLL-like receptor 5; m 98.8 3.1E-09 1.1E-13 104.3 6.9 65 22-86 90-158 (844)
56 3j0a_A TOLL-like receptor 5; m 98.8 5.5E-09 1.9E-13 102.5 8.7 119 4-126 266-390 (844)
57 1wwl_A Monocyte differentiatio 98.8 1.7E-10 5.9E-15 99.9 -2.3 183 19-221 78-286 (312)
58 2z7x_B TOLL-like receptor 1, v 98.8 6.5E-09 2.2E-13 96.3 8.0 66 149-221 321-386 (520)
59 2ft3_A Biglycan; proteoglycan, 98.8 4.6E-10 1.6E-14 98.1 0.0 199 4-220 54-275 (332)
60 1xku_A Decorin; proteoglycan, 98.8 1.2E-09 4E-14 95.3 2.6 178 18-220 43-227 (330)
61 2z66_A Variable lymphocyte rec 98.8 7.5E-10 2.6E-14 95.5 1.1 198 4-221 52-260 (306)
62 2z62_A TOLL-like receptor 4, v 98.8 4.6E-10 1.6E-14 95.4 -0.3 140 11-164 12-161 (276)
63 3goz_A Leucine-rich repeat-con 98.8 1.2E-10 4.2E-15 103.1 -4.0 248 21-281 14-295 (362)
64 3o6n_A APL1; leucine-rich repe 98.8 3.1E-09 1.1E-13 94.8 4.9 208 4-251 117-348 (390)
65 2z62_A TOLL-like receptor 4, v 98.8 6.6E-10 2.3E-14 94.4 0.4 197 4-221 28-236 (276)
66 2o6q_A Variable lymphocyte rec 98.8 2.8E-09 9.7E-14 90.2 4.2 177 4-220 37-216 (270)
67 2z7x_B TOLL-like receptor 1, v 98.8 1.6E-08 5.3E-13 93.7 9.5 136 11-164 5-150 (520)
68 1h6u_A Internalin H; cell adhe 98.8 4.5E-09 1.5E-13 90.8 5.2 162 4-191 63-227 (308)
69 2ell_A Acidic leucine-rich nuc 98.8 5.1E-09 1.7E-13 82.0 4.9 134 4-164 24-159 (168)
70 3vq2_A TLR4, TOLL-like recepto 98.8 3.4E-09 1.1E-13 100.1 4.6 11 271-281 546-556 (606)
71 3goz_A Leucine-rich repeat-con 98.8 1.7E-10 5.7E-15 102.2 -4.4 208 4-220 22-264 (362)
72 3oja_B Anopheles plasmodium-re 98.8 3.2E-09 1.1E-13 100.2 4.1 187 4-220 123-335 (597)
73 3oja_A Leucine-rich immune mol 98.8 5.8E-10 2E-14 102.7 -1.1 168 28-221 33-203 (487)
74 1wwl_A Monocyte differentiatio 98.7 5.4E-10 1.9E-14 96.8 -1.6 226 20-281 56-307 (312)
75 1h6t_A Internalin B; cell adhe 98.7 2.5E-09 8.5E-14 91.7 2.4 163 28-220 45-211 (291)
76 1p9a_G Platelet glycoprotein I 98.7 1.4E-09 4.8E-14 93.2 0.6 113 5-125 11-132 (290)
77 3bz5_A Internalin-J, INLJ; leu 98.7 1.1E-08 3.7E-13 93.4 5.9 74 4-86 64-137 (457)
78 2ft3_A Biglycan; proteoglycan, 98.7 2.9E-09 9.9E-14 92.9 1.8 106 19-128 46-158 (332)
79 3vq2_A TLR4, TOLL-like recepto 98.7 2.7E-09 9.1E-14 100.7 1.6 183 25-220 281-484 (606)
80 4ezg_A Putative uncharacterize 98.7 1.9E-08 6.3E-13 81.0 6.1 143 5-164 45-193 (197)
81 3g06_A SSPH2 (leucine-rich rep 98.7 1.3E-08 4.6E-13 96.0 5.6 108 4-125 61-169 (622)
82 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 3E-08 1E-12 92.8 8.0 65 149-220 350-414 (562)
83 2xwt_C Thyrotropin receptor; s 98.7 4.4E-09 1.5E-13 87.3 1.9 178 19-220 24-216 (239)
84 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 4.9E-08 1.7E-12 91.3 9.0 135 12-164 37-181 (562)
85 1xeu_A Internalin C; cellular 98.7 7.7E-09 2.6E-13 87.3 3.1 145 24-191 36-182 (263)
86 1m9s_A Internalin B; cell inva 98.6 4.1E-09 1.4E-13 99.3 0.6 162 28-219 42-207 (605)
87 3m19_A Variable lymphocyte rec 98.6 2.3E-08 8E-13 83.6 5.0 151 5-191 36-189 (251)
88 2je0_A Acidic leucine-rich nuc 98.6 5.1E-09 1.7E-13 80.3 0.7 132 4-160 17-148 (149)
89 1ziw_A TOLL-like receptor 3; i 98.6 2.5E-09 8.6E-14 102.4 -1.6 67 148-219 500-570 (680)
90 3rfs_A Internalin B, repeat mo 98.6 1.2E-08 4.2E-13 86.4 2.9 176 5-221 42-217 (272)
91 1p9a_G Platelet glycoprotein I 98.6 2.5E-08 8.7E-13 85.3 4.4 211 25-270 6-225 (290)
92 4glp_A Monocyte differentiatio 98.6 8.9E-10 3E-14 95.3 -4.8 175 27-221 89-284 (310)
93 2v9t_B SLIT homolog 2 protein 98.6 3.5E-08 1.2E-12 80.9 4.7 161 12-208 17-180 (220)
94 2o6s_A Variable lymphocyte rec 98.6 2.3E-08 7.8E-13 81.1 3.3 162 13-221 14-177 (208)
95 2ra8_A Uncharacterized protein 98.6 1.1E-08 3.8E-13 90.2 1.0 59 29-87 107-183 (362)
96 3o53_A Protein LRIM1, AGAP0063 98.6 2.4E-09 8.2E-14 92.9 -3.3 214 27-281 32-248 (317)
97 2xwt_C Thyrotropin receptor; s 98.5 3E-08 1E-12 82.2 3.2 187 4-218 31-235 (239)
98 1ziw_A TOLL-like receptor 3; i 98.5 2.2E-08 7.4E-13 95.9 2.5 79 5-86 74-155 (680)
99 1h6t_A Internalin B; cell adhe 98.5 4.3E-08 1.5E-12 83.9 4.1 160 5-191 47-210 (291)
100 4g8a_A TOLL-like receptor 4; l 98.5 3.6E-07 1.2E-11 86.3 10.0 134 17-164 42-185 (635)
101 3g06_A SSPH2 (leucine-rich rep 98.5 6E-08 2.1E-12 91.6 4.6 159 28-221 120-296 (622)
102 1m9s_A Internalin B; cell inva 98.5 5.2E-08 1.8E-12 91.8 3.9 146 20-189 57-205 (605)
103 3e6j_A Variable lymphocyte rec 98.5 1.5E-07 5.1E-12 77.6 6.2 140 13-189 26-167 (229)
104 3cvr_A Invasion plasmid antige 98.5 5E-08 1.7E-12 91.1 3.3 175 5-221 60-242 (571)
105 4glp_A Monocyte differentiatio 98.5 7.2E-08 2.5E-12 83.2 4.1 165 4-189 117-302 (310)
106 3e4g_A ATP synthase subunit S, 98.4 2E-07 6.9E-12 72.9 5.1 95 18-128 50-150 (176)
107 2v9t_B SLIT homolog 2 protein 98.4 1.3E-07 4.5E-12 77.4 3.0 82 4-88 32-116 (220)
108 2v70_A SLIT-2, SLIT homolog 2 98.3 1.9E-07 6.4E-12 76.5 3.3 141 13-189 18-161 (220)
109 2v70_A SLIT-2, SLIT homolog 2 98.3 2.1E-07 7.1E-12 76.2 3.4 128 5-163 33-164 (220)
110 1xeu_A Internalin C; cellular 98.3 1.1E-07 3.9E-12 80.0 1.3 140 5-164 42-184 (263)
111 1ds9_A Outer arm dynein; leuci 98.3 8.9E-08 3E-12 77.0 0.4 65 20-86 39-103 (198)
112 4g8a_A TOLL-like receptor 4; l 98.3 3.4E-07 1.1E-11 86.5 3.2 124 49-189 49-181 (635)
113 4ay9_X Follicle-stimulating ho 98.2 2.6E-07 8.9E-12 81.1 1.9 189 11-221 14-214 (350)
114 2o6s_A Variable lymphocyte rec 98.2 5.7E-07 1.9E-11 72.7 3.5 80 5-87 29-111 (208)
115 3e6j_A Variable lymphocyte rec 98.2 6.2E-07 2.1E-11 73.8 3.5 128 4-163 40-170 (229)
116 2je0_A Acidic leucine-rich nuc 98.2 1.4E-07 4.7E-12 72.1 -0.6 129 28-188 16-147 (149)
117 2xot_A Amphoterin-induced prot 98.2 3.2E-07 1.1E-11 80.9 1.6 111 13-127 25-146 (361)
118 3un9_A NLR family member X1; l 98.2 2.9E-08 1E-12 88.0 -5.2 170 29-221 72-251 (372)
119 2wfh_A SLIT homolog 2 protein 98.2 5.4E-07 1.8E-11 72.2 2.7 37 148-189 98-134 (193)
120 1jl5_A Outer protein YOPM; leu 98.2 9.9E-07 3.4E-11 80.3 4.5 100 21-127 146-247 (454)
121 1w8a_A SLIT protein; signaling 98.2 5.8E-07 2E-11 71.9 2.5 72 13-87 15-89 (192)
122 2xot_A Amphoterin-induced prot 98.2 7.6E-07 2.6E-11 78.5 3.4 145 5-164 40-201 (361)
123 1jl5_A Outer protein YOPM; leu 98.2 1.1E-06 3.8E-11 80.0 4.3 189 5-221 174-369 (454)
124 1a9n_A U2A', U2A'; complex (nu 98.1 4.2E-07 1.4E-11 71.6 0.7 60 25-87 15-75 (176)
125 2o6r_A Variable lymphocyte rec 98.1 1.9E-06 6.5E-11 67.7 3.7 65 19-86 20-86 (177)
126 1dce_A Protein (RAB geranylger 98.1 1.4E-06 4.7E-11 81.5 3.3 105 30-165 442-546 (567)
127 2wfh_A SLIT homolog 2 protein 98.1 1.7E-06 6E-11 69.1 3.0 112 11-126 15-135 (193)
128 1a9n_A U2A', U2A'; complex (nu 98.0 4.1E-07 1.4E-11 71.6 -1.0 133 4-165 19-153 (176)
129 3e4g_A ATP synthase subunit S, 98.0 3.7E-06 1.3E-10 65.7 4.1 86 3-90 60-153 (176)
130 4ay9_X Follicle-stimulating ho 97.9 5.6E-06 1.9E-10 72.6 3.9 199 4-218 30-255 (350)
131 1w8a_A SLIT protein; signaling 97.9 5.2E-06 1.8E-10 66.3 2.8 103 5-127 30-136 (192)
132 3g39_A Variable lymphocyte rec 97.8 1E-05 3.4E-10 63.2 3.6 95 13-127 16-112 (170)
133 2r9u_A Variable lymphocyte rec 97.8 1.2E-05 4.2E-10 63.0 3.6 95 13-127 19-115 (174)
134 3cvr_A Invasion plasmid antige 97.8 1.3E-05 4.4E-10 74.8 4.1 159 4-191 80-240 (571)
135 2ra8_A Uncharacterized protein 97.7 1.5E-05 5.1E-10 70.2 3.5 154 27-202 170-328 (362)
136 2ell_A Acidic leucine-rich nuc 97.7 1.8E-05 6.2E-10 61.4 3.5 82 4-88 49-132 (168)
137 2o6r_A Variable lymphocyte rec 97.7 1.8E-05 6.2E-10 62.0 3.5 104 4-127 28-134 (177)
138 1ds9_A Outer arm dynein; leuci 97.7 8E-06 2.7E-10 65.4 0.9 98 4-107 48-150 (198)
139 1dce_A Protein (RAB geranylger 97.7 1.6E-05 5.3E-10 74.4 3.0 97 5-107 442-543 (567)
140 4b8c_D Glucose-repressible alc 97.7 5.6E-06 1.9E-10 79.7 -0.4 102 22-126 217-325 (727)
141 3g39_A Variable lymphocyte rec 97.6 3.5E-05 1.2E-09 60.1 3.9 81 4-87 30-113 (170)
142 2r9u_A Variable lymphocyte rec 97.6 4.4E-05 1.5E-09 59.8 3.9 81 4-87 33-116 (174)
143 3un9_A NLR family member X1; l 97.6 1.3E-06 4.6E-11 77.3 -5.6 139 4-164 72-223 (372)
144 3sb4_A Hypothetical leucine ri 97.3 6.6E-05 2.3E-09 65.0 2.2 82 116-220 225-308 (329)
145 4b8c_D Glucose-repressible alc 97.3 3.6E-05 1.2E-09 74.2 -0.0 98 4-106 224-325 (727)
146 3sb4_A Hypothetical leucine ri 97.2 0.00029 1E-08 60.9 5.2 164 28-216 100-328 (329)
147 1io0_A Tropomodulin; LRR prote 97.2 5.3E-05 1.8E-09 60.0 0.1 61 27-87 34-104 (185)
148 2ifg_A High affinity nerve gro 97.2 0.00013 4.4E-09 63.6 2.6 74 12-87 14-91 (347)
149 1io0_A Tropomodulin; LRR prote 96.8 0.00017 5.7E-09 57.1 -0.4 39 181-219 121-161 (185)
150 3rw6_A Nuclear RNA export fact 96.7 0.00055 1.9E-08 57.3 1.9 60 27-88 168-232 (267)
151 4fdw_A Leucine rich hypothetic 96.6 0.0012 4.3E-08 58.7 3.6 34 29-62 157-191 (401)
152 2ifg_A High affinity nerve gro 96.6 0.00088 3E-08 58.2 2.5 80 4-87 31-114 (347)
153 4fdw_A Leucine rich hypothetic 95.9 0.0071 2.4E-07 53.8 4.7 92 29-125 135-234 (401)
154 3rw6_A Nuclear RNA export fact 95.3 0.0059 2E-07 51.0 1.7 60 48-107 167-230 (267)
155 3rfe_A Platelet glycoprotein I 90.1 0.3 1E-05 35.7 4.0 42 20-63 24-67 (130)
156 4gt6_A Cell surface protein; l 88.6 0.9 3.1E-05 39.8 6.7 40 112-163 329-368 (394)
157 4fs7_A Uncharacterized protein 85.8 1.1 3.8E-05 39.2 5.7 93 26-125 273-374 (394)
158 1pgv_A TMD-1, tropomodulin TMD 81.5 0.39 1.3E-05 37.9 0.7 61 27-87 39-109 (197)
159 1pgv_A TMD-1, tropomodulin TMD 79.3 0.59 2E-05 36.8 1.1 59 48-107 38-108 (197)
160 4gt6_A Cell surface protein; l 77.6 1.2 4.1E-05 39.0 2.7 96 26-125 285-386 (394)
161 4fs7_A Uncharacterized protein 76.0 6 0.0002 34.4 6.8 118 27-162 251-376 (394)
162 4h09_A Hypothetical leucine ri 63.5 5.2 0.00018 34.5 3.6 56 26-85 260-319 (379)
163 3rfe_A Platelet glycoprotein I 55.8 6.3 0.00021 28.4 2.3 52 33-87 12-66 (130)
164 4h09_A Hypothetical leucine ri 44.3 12 0.00042 32.1 2.7 95 25-124 236-340 (379)
165 2lz0_A Uncharacterized protein 38.3 29 0.00098 23.6 3.3 13 72-84 39-51 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.48 E-value=3.7e-14 Score=124.07 Aligned_cols=193 Identities=19% Similarity=0.184 Sum_probs=122.9
Q ss_pred CCCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480 3 RSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 81 (312)
Q Consensus 3 ~~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 81 (312)
..+|++|+++.... ..+|..++.+++|+.|+|++|.+.. |..+..+++|++|+|++|.++ .++..+..++.|++|
T Consensus 80 ~~~l~~L~L~~n~l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCC--SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCc--hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEE
Confidence 36788888865543 3899999999999999999998765 566889999999999999986 356668899999999
Q ss_pred eeeccCCceeEE------------EeCCCcceEEEeec-ccce--eeecCCcceEEEEeEEEeecCCccCCCCcchhHHH
Q 021480 82 TLMNFDGFTHLN------------IDAPNLQFFDIGGV-FDDV--TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLR 146 (312)
Q Consensus 82 ~l~~~~~~~~~~------------i~~p~L~~L~~~~~-~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~ 146 (312)
++.+|.....+. -..++|+.|.+.++ +..+ .+..+++|+.++++.+.... .+ .
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~---------l~---~ 223 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA---------LG---P 223 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC---------CC---G
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc---------Cc---h
Confidence 999986543221 12566777777663 2211 24556677777665432110 00 1
Q ss_pred HhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480 147 FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 147 ~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
-+..+++|+.|+++.+.+ .+..|..+. .+++|++|.+..+.... .++..+..+++|+.|++..+.
T Consensus 224 ~l~~l~~L~~L~Ls~n~~----~~~~p~~~~-~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTA----LRNYPPIFG-GRAPLKRLILKDCSNLL----TLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp GGGGCTTCCEEECTTCTT----CCBCCCCTT-CCCCCCEEECTTCTTCC----BCCTTGGGCTTCCEEECTTCT
T ss_pred hhccCCCCCEEECcCCcc----hhhhHHHhc-CCCCCCEEECCCCCchh----hcchhhhcCCCCCEEeCCCCC
Confidence 245566777777765433 222332222 35566666663321111 133345666777777776543
No 2
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.24 E-value=9.7e-11 Score=103.25 Aligned_cols=182 Identities=20% Similarity=0.211 Sum_probs=113.5
Q ss_pred ceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEE--
Q 021480 18 RYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN-- 93 (312)
Q Consensus 18 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~-- 93 (312)
...+|..+. ++|+.|++++|.+.. +..+..+++|++|+++++.+++. ....+..++.|++|++++|.... +.
T Consensus 43 l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~-~~~~ 118 (353)
T 2z80_A 43 LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEHLDLSYNYLSN-LSSS 118 (353)
T ss_dssp CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSS-CCHH
T ss_pred ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc-CHhhcCCCCCCCEEECCCCcCCc-CCHh
Confidence 346676554 478888888887654 23577888888888888876542 12346778888888888774321 11
Q ss_pred -E-eCCCcceEEEeec-ccc----eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhh
Q 021480 94 -I-DAPNLQFFDIGGV-FDD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKY 166 (312)
Q Consensus 94 -i-~~p~L~~L~~~~~-~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~ 166 (312)
+ ..++|++|.+.++ +.. ..+..+++|+.++++.+..... .. ...+.++++++.|++..+.+.
T Consensus 119 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~--------~~--~~~~~~l~~L~~L~l~~n~l~- 187 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK--------IQ--RKDFAGLTFLEELEIDASDLQ- 187 (353)
T ss_dssp HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE--------EC--TTTTTTCCEEEEEEEEETTCC-
T ss_pred HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc--------cC--HHHccCCCCCCEEECCCCCcC-
Confidence 1 2467888888763 222 2356789999999875421110 00 123567889999999877552
Q ss_pred hcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCC
Q 021480 167 LAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEE 222 (312)
Q Consensus 167 l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~ 222 (312)
+..+..+. .+++|++|.+..+.. ..+ -..++..+++|+.|++..+...
T Consensus 188 ---~~~~~~l~-~l~~L~~L~l~~n~l--~~~--~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 188 ---SYEPKSLK-SIQNVSHLILHMKQH--ILL--LEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp ---EECTTTTT-TCSEEEEEEEECSCS--TTH--HHHHHHHTTTEEEEEEESCBCT
T ss_pred ---ccCHHHHh-ccccCCeecCCCCcc--ccc--hhhhhhhcccccEEECCCCccc
Confidence 22233332 367788887754432 221 2335567899999999887543
No 3
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.22 E-value=3.2e-11 Score=106.32 Aligned_cols=251 Identities=18% Similarity=0.152 Sum_probs=140.6
Q ss_pred CCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
+++++|+++... ...+|. .+..+++|+.|++++|.+.. +..+.++++|++|+++++.+++- ....+..+++|++
T Consensus 52 ~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSE
T ss_pred ccCcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCE
Confidence 367777775443 335666 57788999999999997764 44578899999999999987642 2344678899999
Q ss_pred eeeeccCCce--e--EEEeCCCcceEEEeec--ccce---eeecCCcceEEEEeEEEeecC-CccCCC------------
Q 021480 81 LTLMNFDGFT--H--LNIDAPNLQFFDIGGV--FDDV---TFENTFHLALVSIGLYVNVKN-DQAMGP------------ 138 (312)
Q Consensus 81 L~l~~~~~~~--~--~~i~~p~L~~L~~~~~--~~~~---~~~~~~~L~~l~l~~~~~~~~-~~~~~~------------ 138 (312)
|++.++.... . .--..++|+.|.+.++ +..+ .+..+++|++++++.+..... ...+..
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 9998874221 1 1113467888888774 2222 245677777777764321100 000000
Q ss_pred CcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEe
Q 021480 139 GNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA 218 (312)
Q Consensus 139 ~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~ 218 (312)
.....-..++..+++++.|+++.+.+......... .......++.+.+....-....+..++..+..+++|+.|++..
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS--TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred ccccchhhhhhhcccccEEECCCCccccccccccc--cccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 00000012334466677777766654322111110 0112445666666433333344455777788899999999877
Q ss_pred ccCCCCCcccccccccccccccccCceEEEEEe--EecchhHHHHHHHHHcc
Q 021480 219 RPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVG--ISGIRSELEFIKFVLSN 268 (312)
Q Consensus 219 ~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~--~~~~~~~~~~~~~ll~~ 268 (312)
+.... .+.. .-...++|+.+.+.+ +.+....+..+...+++
T Consensus 287 N~l~~---i~~~------~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 287 NQLKS---VPDG------IFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp SCCCC---CCTT------TTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred CCCCc---cCHH------HHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence 64321 0000 001246788888874 44444445555444444
No 4
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.19 E-value=3.4e-11 Score=112.40 Aligned_cols=212 Identities=25% Similarity=0.212 Sum_probs=133.3
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 81 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 81 (312)
+++++|+++.+... .-.|..+..+++|++|++++|.+.. +..+.++++|++|+++++.+++. ....+..+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEE
Confidence 46788887655432 2235667889999999999997764 45688999999999999988653 33457889999999
Q ss_pred eeeccCCce----eEEEeCCCcceEEEeec--ccce---eeecCCcceEEEEeEEEeecCCccCCCC-------------
Q 021480 82 TLMNFDGFT----HLNIDAPNLQFFDIGGV--FDDV---TFENTFHLALVSIGLYVNVKNDQAMGPG------------- 139 (312)
Q Consensus 82 ~l~~~~~~~----~~~i~~p~L~~L~~~~~--~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~------------- 139 (312)
++++|.... ..--..++|+.|.+.++ ...+ .+..+++|++++++.+...... +...+
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TTTTTTCSEEEEEEEECS
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC-hhhhhccccCceEecccC
Confidence 999875321 11113467888888774 2222 3556778888877643221100 00000
Q ss_pred cchhH-HHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEe
Q 021480 140 NSCKL-LRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA 218 (312)
Q Consensus 140 ~~~~~-~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~ 218 (312)
....+ ..++..+++++.|++..+.+..... .+..+...+.+|++|.+..+.........+...+..+++|+.+.+..
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQF--SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCC--CCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cccccchhhHhhcccccEEEccCCccccccc--cccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 00011 1234567889999988776532211 11122334778999998544323334445777788899999999987
Q ss_pred cc
Q 021480 219 RP 220 (312)
Q Consensus 219 ~~ 220 (312)
+.
T Consensus 261 ~~ 262 (549)
T 2z81_A 261 CT 262 (549)
T ss_dssp CE
T ss_pred cc
Confidence 64
No 5
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.18 E-value=4.3e-10 Score=104.85 Aligned_cols=237 Identities=15% Similarity=0.099 Sum_probs=149.9
Q ss_pred CcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEE
Q 021480 16 GQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN 93 (312)
Q Consensus 16 ~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~ 93 (312)
.....+|..+. ++|++|++++|.+.. +..+.++++|++|+++++.+++. .+..+..++.|++|++++|.......
T Consensus 15 ~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 15 RSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp SCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred CccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCcc-ChhhccccccCCEEECCCCccCccCH
Confidence 34467888765 789999999998764 45789999999999999988642 22457899999999999885322110
Q ss_pred ---EeCCCcceEEEeec-ccc----eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehh
Q 021480 94 ---IDAPNLQFFDIGGV-FDD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLK 165 (312)
Q Consensus 94 ---i~~p~L~~L~~~~~-~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~ 165 (312)
-..++|++|.++++ +.. ..+.++++|+.++++.+..... .+ ...+.++++++.|++..+.+.
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~--------~~--~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE--------IR--RIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE--------EC--TTTTTTCCEEEEEEEEETTCC
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc--------cC--HhhhhcccccCeeeccCCccc
Confidence 13478999999874 221 2366899999999976431110 00 123567899999999987552
Q ss_pred hhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccccccccccCce
Q 021480 166 YLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLR 245 (312)
Q Consensus 166 ~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~ 245 (312)
+..+..+. .+.+|++|.+..+... .+ -..++..+++|+.|++..+........+ .+ ......+|+
T Consensus 162 ----~~~~~~l~-~l~~L~~L~l~~n~~~--~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~----~~~~~~~L~ 226 (549)
T 2z81_A 162 ----NYQSQSLK-SIRDIHHLTLHLSESA--FL--LEIFADILSSVRYLELRDTNLARFQFSP--LP----VDEVSSPMK 226 (549)
T ss_dssp ----EECTTTTT-TCSEEEEEEEECSBST--TH--HHHHHHSTTTBSEEEEESCBCTTCCCCC--CS----SCCCCCCCC
T ss_pred ----ccChhhhh-ccccCceEecccCccc--cc--chhhHhhcccccEEEccCCccccccccc--cc----hhhhhhccc
Confidence 22333333 3677888887544322 11 2234577999999999987543110000 00 011246788
Q ss_pred EEEEEeEecchhHHHHHHHHHccCcccceeEEecC
Q 021480 246 MVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPA 280 (312)
Q Consensus 246 ~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~~~ 280 (312)
.+.+.+-.-......-+...+.+.+.|+.+.+..+
T Consensus 227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESC
T ss_pred ceeccccccchhHHHHHHHHhhhhccccccccccc
Confidence 88877543333333333334556667777766544
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.17 E-value=3.3e-12 Score=111.67 Aligned_cols=192 Identities=15% Similarity=0.145 Sum_probs=133.9
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHH---------Hh
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENL---------IS 73 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l---------l~ 73 (312)
.+++.|+++.+.. ..+|..+..+++|+.|+|++|.+.. |..+..+++|+.|++++|.+.+. ++.. +.
T Consensus 104 ~~L~~L~L~~n~l--~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 104 SHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTE-LPEPLASTDASGEHQ 180 (328)
T ss_dssp TTCSEEEEESSCC--CCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCC-CCSCSEEEC-CCCEE
T ss_pred CCCCEEECCCCCc--cchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccc-cChhHhhccchhhhc
Confidence 4678888865543 3889999999999999999998765 55688999999999999865432 1111 34
Q ss_pred CCcccceeeeeccCCceeEE---EeCCCcceEEEeec-ccce--eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHH
Q 021480 74 SSPTLERLTLMNFDGFTHLN---IDAPNLQFFDIGGV-FDDV--TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRF 147 (312)
Q Consensus 74 ~cp~Le~L~l~~~~~~~~~~---i~~p~L~~L~~~~~-~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 147 (312)
+++.|+.|++.+|... .+. -..++|+.|.+.++ +..+ .+..+++|+.++++.+..... . ...
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~--------~---p~~ 248 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN--------Y---PPI 248 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB--------C---CCC
T ss_pred cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh--------h---HHH
Confidence 5999999999988532 111 13578999999984 2222 366889999999975432211 1 123
Q ss_pred hhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021480 148 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR 219 (312)
Q Consensus 148 l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~ 219 (312)
++.+++|+.|++..+.. .+..|..+. .+++|++|.++.+.... .++..+..+++|+.+.+...
T Consensus 249 ~~~l~~L~~L~L~~n~~----~~~~p~~~~-~l~~L~~L~L~~n~~~~----~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSN----LLTLPLDIH-RLTQLEKLDLRGCVNLS----RLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCCCCCCEEECTTCTT----CCBCCTTGG-GCTTCCEEECTTCTTCC----CCCGGGGGSCTTCEEECCGG
T ss_pred hcCCCCCCEEECCCCCc----hhhcchhhh-cCCCCCEEeCCCCCchh----hccHHHhhccCceEEeCCHH
Confidence 56789999999987643 334443333 47889988885432211 36777899999999988543
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.17 E-value=1.6e-11 Score=107.87 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=41.4
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM 84 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 84 (312)
++++|++..... ..+|. +..+++|++|++++|.+...+.+..+++|++|+++++.+++- + .+..++.|++|++.
T Consensus 45 ~L~~L~l~~~~i--~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 45 SITKLVVAGEKV--ASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYLN 118 (347)
T ss_dssp TCSEEECCSSCC--CCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEECT
T ss_pred cccEEEEeCCcc--ccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEECc
Confidence 345555533221 23332 555666666666666655433356666666666666665431 1 25566666666666
Q ss_pred cc
Q 021480 85 NF 86 (312)
Q Consensus 85 ~~ 86 (312)
+|
T Consensus 119 ~n 120 (347)
T 4fmz_A 119 ED 120 (347)
T ss_dssp TS
T ss_pred CC
Confidence 55
No 8
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.17 E-value=8.3e-13 Score=115.58 Aligned_cols=184 Identities=17% Similarity=0.228 Sum_probs=105.0
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC---CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
++++.|++.... ....+..++.+++|+.|++++|.+.. +..+..+++|++|++++|.+++.. ...++.||.|++
T Consensus 70 ~~l~~L~l~~n~--l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~-~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRSF--MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPI-VNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTCE--ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHH-HHHHTTCTTCSE
T ss_pred ccceEEEcCCcc--ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHH-HHHHhcCCCCCE
Confidence 567777764332 22444557789999999999998753 334678999999999999987654 445678999999
Q ss_pred eeeeccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCC-CccEEEE
Q 021480 81 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP-HIRRLEI 159 (312)
Q Consensus 81 L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~l 159 (312)
|++.+|..+... .+. ..+..+++|++++++.+... ....+...+..++ +|++|++
T Consensus 147 L~L~~~~~l~~~--------------~l~-~~~~~~~~L~~L~l~~~~~l---------~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 147 LNLSGCSGFSEF--------------ALQ-TLLSSCSRLDELNLSWCFDF---------TEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBSCCHH--------------HHH-HHHHHCTTCCEEECCCCTTC---------CHHHHHHHHHHSCTTCCEEEC
T ss_pred EECCCCCCCCHH--------------HHH-HHHhcCCCCCEEcCCCCCCc---------ChHHHHHHHHhcccCCCEEEe
Confidence 999998543210 011 11334566666666543111 1112234455666 6777776
Q ss_pred eeeehhhhcccCCCCCCCcccCCcceEEEEEEc-CChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480 160 QSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINF-NDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 160 ~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~-~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
.++... +.....+. ....+++|++|.+..+. .... ....+..+|+|+.|++..+.
T Consensus 203 ~~~~~~-~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~----~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 203 SGYRKN-LQKSDLST-LVRRCPNLVHLDLSDSVMLKND----CFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CSCGGG-SCHHHHHH-HHHHCTTCSEEECTTCTTCCGG----GGGGGGGCTTCCEEECTTCT
T ss_pred CCCccc-CCHHHHHH-HHhhCCCCCEEeCCCCCcCCHH----HHHHHhCCCCCCEeeCCCCC
Confidence 655210 00011111 11135566666664332 1111 22234566777777776553
No 9
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.11 E-value=9.5e-11 Score=110.31 Aligned_cols=62 Identities=11% Similarity=0.203 Sum_probs=45.8
Q ss_pred ccCCcceEEEeeceeeCCCC------CCCCCcccceeeecceeeC---hHHHHHHHhCCcccceeeeeccC
Q 021480 26 FLCQNLIHLELFNCLLKPPS------TFKGFRNLKSLDLQHITLS---QDVFENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 26 ~~~~~L~~L~L~~~~l~~~~------~~~~l~~L~~L~L~~~~~~---~~~l~~ll~~cp~Le~L~l~~~~ 87 (312)
..|++|++|+|++|.+.+.. ...++++|++|+++++.++ .+.+..++..||+|++|++.+|.
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 35788888888888765421 1246788888888888765 45678888889999999988764
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.11 E-value=2e-11 Score=105.97 Aligned_cols=238 Identities=16% Similarity=0.088 Sum_probs=147.5
Q ss_pred CCceEEEEEecCCc-ceecCCCcccCCcceEEEeec-eeeC--CCCCCCCCcccceeeecceeeChHHHHHHHhCCcccc
Q 021480 4 SCVKEFILEIWKGQ-RYKVPSSLFLCQNLIHLELFN-CLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE 79 (312)
Q Consensus 4 ~~v~eL~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~-~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 79 (312)
.+|++|+++..... .+.+|..+..+++|++|++++ +.+. .|..+..+++|++|+++++.+++. ++..+..++.|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCC
Confidence 67889998755432 237899999999999999995 6554 366788999999999999988633 344578899999
Q ss_pred eeeeeccCCceeEE---EeCCCcceEEEeecc-c---ceeeecCC-cceEEEEeEEEeecCCccCCCCcchhHHHHhhcC
Q 021480 80 RLTLMNFDGFTHLN---IDAPNLQFFDIGGVF-D---DVTFENTF-HLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL 151 (312)
Q Consensus 80 ~L~l~~~~~~~~~~---i~~p~L~~L~~~~~~-~---~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 151 (312)
+|++++|.....+. -..++|+.|.+.++. . +..+..++ +|+.++++.+...... ...+..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~-----------~~~~~~l 197 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI-----------PPTFANL 197 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC-----------CGGGGGC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC-----------ChHHhCC
Confidence 99999874321111 135789999988742 1 12345666 8999998755432110 1224455
Q ss_pred CCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccc
Q 021480 152 PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNF 231 (312)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~ 231 (312)
+ ++.|+++.+.+. +..+..+. .+++|+.|.+..+.-... ++ .+..+++|+.|++..+..... .+ .
T Consensus 198 ~-L~~L~Ls~N~l~----~~~~~~~~-~l~~L~~L~L~~N~l~~~----~~-~~~~l~~L~~L~Ls~N~l~~~--~p--~ 262 (313)
T 1ogq_A 198 N-LAFVDLSRNMLE----GDASVLFG-SDKNTQKIHLAKNSLAFD----LG-KVGLSKNLNGLDLRNNRIYGT--LP--Q 262 (313)
T ss_dssp C-CSEEECCSSEEE----ECCGGGCC-TTSCCSEEECCSSEECCB----GG-GCCCCTTCCEEECCSSCCEEC--CC--G
T ss_pred c-ccEEECcCCccc----CcCCHHHh-cCCCCCEEECCCCceeee----cC-cccccCCCCEEECcCCcccCc--CC--h
Confidence 5 899998877653 22222222 367888888743321110 22 256788999998877643210 00 0
Q ss_pred cccccccccccCceEEEEEe--EecchhHHHHHHHHHccCcccceeEEecC
Q 021480 232 WEVDHWTSLFSQLRMVKIVG--ISGIRSELEFIKFVLSNSPVLETMTIKPA 280 (312)
Q Consensus 232 w~~~~~~~~~~~L~~v~i~~--~~~~~~~~~~~~~ll~~~~~Le~~~i~~~ 280 (312)
+ -....+|+.+.+.+ +.|.-... .+.+.|+.+.+..+
T Consensus 263 ~-----l~~l~~L~~L~Ls~N~l~~~ip~~-------~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 263 G-----LTQLKFLHSLNVSFNNLCGEIPQG-------GNLQRFDVSAYANN 301 (313)
T ss_dssp G-----GGGCTTCCEEECCSSEEEEECCCS-------TTGGGSCGGGTCSS
T ss_pred H-----HhcCcCCCEEECcCCcccccCCCC-------ccccccChHHhcCC
Confidence 0 02246788887773 33321110 34556666655544
No 11
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.09 E-value=1.7e-12 Score=118.60 Aligned_cols=208 Identities=14% Similarity=0.111 Sum_probs=103.1
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC------CCCCCCCcccceeeecceeeChHHHHHHHhCCc--
Q 021480 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP------PSTFKGFRNLKSLDLQHITLSQDVFENLISSSP-- 76 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp-- 76 (312)
.+++|+++........+...+..+++|++|++++|.+.. +..+..+++|++|+++++.+++..+..+...++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 456666654432212222223456777777777776652 123455677777777777776655555555555
Q ss_pred --ccceeeeeccCCce----e---EEEeCCCcceEEEeecc-cc-----ee---eecCCcceEEEEeEEEeecCCccCCC
Q 021480 77 --TLERLTLMNFDGFT----H---LNIDAPNLQFFDIGGVF-DD-----VT---FENTFHLALVSIGLYVNVKNDQAMGP 138 (312)
Q Consensus 77 --~Le~L~l~~~~~~~----~---~~i~~p~L~~L~~~~~~-~~-----~~---~~~~~~L~~l~l~~~~~~~~~~~~~~ 138 (312)
.|++|++++|.... . .--..++|++|.++++. .. +. ....++|++++++.+....
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~------- 156 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA------- 156 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG-------
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH-------
Confidence 57777777764221 0 00134577777776632 11 00 1123467777765432110
Q ss_pred CcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEe
Q 021480 139 GNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA 218 (312)
Q Consensus 139 ~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~ 218 (312)
.....+...+..++++++|+++.+.+...........+....++|++|.+..+.-....+..++..+..+++|+.|++..
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 01122344455667777777766543211000000001111335666666333222233334555566666666666655
Q ss_pred c
Q 021480 219 R 219 (312)
Q Consensus 219 ~ 219 (312)
+
T Consensus 237 n 237 (461)
T 1z7x_W 237 N 237 (461)
T ss_dssp S
T ss_pred C
Confidence 4
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.07 E-value=2.1e-11 Score=104.18 Aligned_cols=223 Identities=13% Similarity=0.059 Sum_probs=136.2
Q ss_pred EEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCC
Q 021480 11 LEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG 88 (312)
Q Consensus 11 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~ 88 (312)
+++...+...+|..+ .++|+.|+++++.+.. +..+..+++|++|+++++.+++. ....+..++.|++|++.++..
T Consensus 16 ~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 16 TSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp EECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTT
T ss_pred EEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCC
Confidence 334444445666654 3688999999987764 34578899999999999877542 133567889999999988863
Q ss_pred ceeEEE----eCCCcceEEEeec-ccc---eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480 89 FTHLNI----DAPNLQFFDIGGV-FDD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 160 (312)
Q Consensus 89 ~~~~~i----~~p~L~~L~~~~~-~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 160 (312)
+..+.. ..++|+.|.+.++ +.. ..+..+++|+.++++.+..... + ...+..+++|+.|++.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~--~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL---------P--DDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------C--TTTTTTCTTCCEEECC
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc---------C--HhHhccCCCccEEECC
Confidence 332211 2468888888873 222 2356788999998875432110 0 1235678899999998
Q ss_pred eeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCccccccccccccccc
Q 021480 161 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSL 240 (312)
Q Consensus 161 ~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~ 240 (312)
.+.+..+. +..+. .+++|++|.+..+.-... .+..+..+++|+.|++..+..... +.. + -..
T Consensus 162 ~n~l~~~~----~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~---~~~-~-----~~~ 223 (285)
T 1ozn_A 162 GNRISSVP----ERAFR-GLHSLDRLLLHQNRVAHV----HPHAFRDLGRLMTLYLFANNLSAL---PTE-A-----LAP 223 (285)
T ss_dssp SSCCCEEC----TTTTT-TCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEEECCSSCCSCC---CHH-H-----HTT
T ss_pred CCcccccC----HHHhc-CccccCEEECCCCccccc----CHhHccCcccccEeeCCCCcCCcC---CHH-H-----ccc
Confidence 87653221 11122 367888888854321111 244567889999999877643210 000 0 022
Q ss_pred ccCceEEEEEe--EecchhHHHHHHHH
Q 021480 241 FSQLRMVKIVG--ISGIRSELEFIKFV 265 (312)
Q Consensus 241 ~~~L~~v~i~~--~~~~~~~~~~~~~l 265 (312)
..+|+.+.+.+ +........+.+++
T Consensus 224 l~~L~~L~l~~N~~~c~~~~~~~~~~l 250 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVCDCRARPLWAWL 250 (285)
T ss_dssp CTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred CcccCEEeccCCCccCCCCcHHHHHHH
Confidence 46888888874 44444444555554
No 13
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.07 E-value=1.7e-11 Score=109.52 Aligned_cols=248 Identities=12% Similarity=0.042 Sum_probs=147.0
Q ss_pred eecCCCcccCCcceEEEeeceeeCCC------CCCCCCcccceeeecceeeC---h------HHHHHHHhCCcccceeee
Q 021480 19 YKVPSSLFLCQNLIHLELFNCLLKPP------STFKGFRNLKSLDLQHITLS---Q------DVFENLISSSPTLERLTL 83 (312)
Q Consensus 19 ~~lp~~l~~~~~L~~L~L~~~~l~~~------~~~~~l~~L~~L~L~~~~~~---~------~~l~~ll~~cp~Le~L~l 83 (312)
..++..+..+++|+.|+|++|.+... ..+..+++|++|+|++|.+. + ..+...+..++.|++|++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 45666677788888888888877541 23567888888888886432 2 123344578888888888
Q ss_pred eccCCce----e---EEEeCCCcceEEEeec-ccc---ee----eecC---------CcceEEEEeEEEeecCCccCCCC
Q 021480 84 MNFDGFT----H---LNIDAPNLQFFDIGGV-FDD---VT----FENT---------FHLALVSIGLYVNVKNDQAMGPG 139 (312)
Q Consensus 84 ~~~~~~~----~---~~i~~p~L~~L~~~~~-~~~---~~----~~~~---------~~L~~l~l~~~~~~~~~~~~~~~ 139 (312)
++|.... . .--..++|++|.++++ +.. .. +..+ ++|+.++++.+... ..
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~-------~~ 174 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE-------NG 174 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT-------GG
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC-------cH
Confidence 8775321 0 1124578888888773 211 11 2223 88998888654311 01
Q ss_pred cchhHHHHhhcCCCccEEEEeeeehhhhccc-CCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEe
Q 021480 140 NSCKLLRFFVHLPHIRRLEIQSYFLKYLAIG-NVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA 218 (312)
Q Consensus 140 ~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~-~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~ 218 (312)
..+.+...+..+++|++|.+..+.+...... ..+..+ ..+++|++|.++.+.-...+...++..+..+|+|+.|.+..
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l-~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTG-GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHh-hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 2333345667788999999987755310000 011122 24778888888544322233345777788899999998876
Q ss_pred ccCCCCCccccccccccccc----ccccCceEEEEEeEecch-hHHHHHHHHHccCcccceeEEecCC
Q 021480 219 RPEETGIGVLTNFWEVDHWT----SLFSQLRMVKIVGISGIR-SELEFIKFVLSNSPVLETMTIKPAS 281 (312)
Q Consensus 219 ~~~~~~~~~~~~~w~~~~~~----~~~~~L~~v~i~~~~~~~-~~~~~~~~ll~~~~~Le~~~i~~~~ 281 (312)
+.....+. ...+. +..++|+.+.+.+-.-.. +...+...+..+.+.|+.+.+..+.
T Consensus 254 n~i~~~~~-------~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 254 CLLSARGA-------AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CCCCHHHH-------HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCchhhH-------HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 54221000 00011 114788888887533222 2234555555778999999988776
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.06 E-value=4.1e-11 Score=109.32 Aligned_cols=191 Identities=18% Similarity=0.165 Sum_probs=109.4
Q ss_pred CCceEEEEEecCCcceec-CCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
.+++.|+++.+.. ..+ |..+..+++|+.|+|++|.+.. +..+.++++|+.|+|+++.++.- ....+..++.|++
T Consensus 75 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNI--QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCE
T ss_pred CCccEEECcCCcC--ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCE
Confidence 3567777754432 234 4556778889999999887654 45677888999999988877532 1234667888888
Q ss_pred eeeeccCCceeEEE----eCCCcceEEEeec--ccce---eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcC
Q 021480 81 LTLMNFDGFTHLNI----DAPNLQFFDIGGV--FDDV---TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL 151 (312)
Q Consensus 81 L~l~~~~~~~~~~i----~~p~L~~L~~~~~--~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l 151 (312)
|++++|... .+.. ..++|+.|.+.+. ...+ .+..+++|+.++++.+.... .+ -+..+
T Consensus 152 L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---------~~----~~~~l 217 (452)
T 3zyi_A 152 LWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---------MP----NLTPL 217 (452)
T ss_dssp EECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---------CC----CCTTC
T ss_pred EECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---------cc----ccccc
Confidence 888877532 1211 2467777877752 1111 24567778888776432210 01 13456
Q ss_pred CCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480 152 PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 152 ~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
++|+.|+++.+.+..+ .+..+. .+++|++|.+..+.-... .+..+..+++|+.|++..+.
T Consensus 218 ~~L~~L~Ls~N~l~~~----~~~~~~-~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEI----RPGSFH-GLSSLKKLWVMNSQVSLI----ERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp TTCCEEECTTSCCSEE----CGGGGT-TCTTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECCSSC
T ss_pred ccccEEECcCCcCccc----Cccccc-CccCCCEEEeCCCcCceE----CHHHhcCCCCCCEEECCCCc
Confidence 6777777766654321 111111 245666666532211100 12234566677777666553
No 15
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.06 E-value=1.7e-10 Score=108.60 Aligned_cols=238 Identities=17% Similarity=0.139 Sum_probs=134.0
Q ss_pred cCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc---eeEEEeC
Q 021480 21 VPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF---THLNIDA 96 (312)
Q Consensus 21 lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~---~~~~i~~ 96 (312)
.+..+..+++|+.|.+..+.... +..+..+++|++|+|++|.+++..+..++..||+|+.|++.++... ..+.-..
T Consensus 262 ~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~ 341 (592)
T 3ogk_B 262 KYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYC 341 (592)
T ss_dssp SSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHC
T ss_pred HHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhC
Confidence 33445556677777666643222 3334578899999999988888777788889999999998844221 1111235
Q ss_pred CCcceEEEe-e---------c--ccc--e-e-eecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480 97 PNLQFFDIG-G---------V--FDD--V-T-FENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 160 (312)
Q Consensus 97 p~L~~L~~~-~---------~--~~~--~-~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 160 (312)
++|+.|.+. | . +.. + . ...+++|++++++.+ .. ....+..+...+++|+.|++.
T Consensus 342 ~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l---------~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DI---------TNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CC---------CHHHHHHHHHHCCSCCEEEEE
T ss_pred CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-Cc---------cHHHHHHHHhhCCCCcEEEEe
Confidence 788888888 2 1 111 1 1 235788888888321 11 222333444458888888886
Q ss_pred ee----ehhhhccc-CCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccc
Q 021480 161 SY----FLKYLAIG-NVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVD 235 (312)
Q Consensus 161 ~~----~~~~l~~~-~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~ 235 (312)
.. .+...+.. ..+ .+...+++|++|.+..+.....+ ..+..+...||+|+.|.+..+..... ....+
T Consensus 412 ~~~~~n~l~~~p~~~~~~-~~~~~~~~L~~L~L~~~~~~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~--- 483 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVR-SLLIGCKKLRRFAFYLRQGGLTD-LGLSYIGQYSPNVRWMLLGYVGESDE---GLMEF--- 483 (592)
T ss_dssp ECSCCSCCSSCCCHHHHH-HHHHHCTTCCEEEEECCGGGCCH-HHHHHHHHSCTTCCEEEECSCCSSHH---HHHHH---
T ss_pred ecCCCccccCchHHHHHH-HHHHhCCCCCEEEEecCCCCccH-HHHHHHHHhCccceEeeccCCCCCHH---HHHHH---
Confidence 32 11100000 000 01123678888888543211111 23555666788888888865532100 00000
Q ss_pred cccccccCceEEEEEeEecchhHHHHHHHHHccCcccceeEEecCC
Q 021480 236 HWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS 281 (312)
Q Consensus 236 ~~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~~~~ 281 (312)
. ...++|+.+.+.+..-.. .-+..+..+.+.|+.+.+..+.
T Consensus 484 -~-~~~~~L~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 484 -S-RGCPNLQKLEMRGCCFSE---RAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp -H-TCCTTCCEEEEESCCCBH---HHHHHHHHHCSSCCEEEEESCB
T ss_pred -H-hcCcccCeeeccCCCCcH---HHHHHHHHhcCccCeeECcCCc
Confidence 0 113688888888754221 2234455677888888888765
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.06 E-value=1.4e-10 Score=112.77 Aligned_cols=68 Identities=24% Similarity=0.254 Sum_probs=46.0
Q ss_pred ecCCCccc-CCcceEEEeeceeeC--CCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480 20 KVPSSLFL-CQNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 20 ~lp~~l~~-~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~ 87 (312)
.+|..++. |++|+.|++++|.+. .|..+..+++|++|++++|.+.+......+..++.|++|++.+|.
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 56666655 477888888877664 245567778888888888776543223346777888888887763
No 17
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.05 E-value=1.3e-10 Score=106.30 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=62.6
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM 84 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 84 (312)
++++|++.... ...+|. +..+++|++|++++|.+...+.+.++++|+.|+++++.+.+.. . +..++.|++|++.
T Consensus 47 ~l~~L~l~~~~--i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 47 QVTTLQADRLG--IKSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLF 120 (466)
T ss_dssp TCCEEECCSSC--CCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECC
T ss_pred cccEEecCCCC--CccCcc-hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccCh--h-hcCCCCCCEEECC
Confidence 45555553222 224553 5567777777777777665333667777777777777665421 1 6677777777777
Q ss_pred ccCCceeE-EEeCCCcceEEEeec-ccce-eeecCCcceEEEE
Q 021480 85 NFDGFTHL-NIDAPNLQFFDIGGV-FDDV-TFENTFHLALVSI 124 (312)
Q Consensus 85 ~~~~~~~~-~i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l 124 (312)
+|.....- --..++|+.|.+.++ +..+ .+..+++|+.+.+
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 163 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEE
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeec
Confidence 66321100 012356666666652 1111 1334555555554
No 18
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.05 E-value=5.9e-11 Score=111.74 Aligned_cols=62 Identities=24% Similarity=0.353 Sum_probs=46.4
Q ss_pred cccCCcceEEEeeceeeCCC--CC----CCCCcccceeeeccee--eChHHHHHHHhCCcccceeeeecc
Q 021480 25 LFLCQNLIHLELFNCLLKPP--ST----FKGFRNLKSLDLQHIT--LSQDVFENLISSSPTLERLTLMNF 86 (312)
Q Consensus 25 l~~~~~L~~L~L~~~~l~~~--~~----~~~l~~L~~L~L~~~~--~~~~~l~~ll~~cp~Le~L~l~~~ 86 (312)
...|++|++|+|++|.+... .. ...+++|++|+++++. ++.+.+..++..||+|+.|++.+|
T Consensus 152 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 34678888888888876441 11 2367789999998885 666778888888999999998876
No 19
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.05 E-value=4.9e-11 Score=104.24 Aligned_cols=209 Identities=13% Similarity=0.152 Sum_probs=136.6
Q ss_pred CcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEEeec
Q 021480 29 QNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGV 107 (312)
Q Consensus 29 ~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~~~ 107 (312)
++++.|+++++.+.. ++.+..+++|+.|+++++.+++..+...+..||.|++|++.+|.... .
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~----------------~ 133 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSD----------------P 133 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCH----------------H
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCH----------------H
Confidence 789999999998765 44567899999999999999888788999999999999999884321 1
Q ss_pred ccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeee-ehhhhcccCCCCCCCcccC-Ccce
Q 021480 108 FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSY-FLKYLAIGNVPSRLPRPCV-DLNY 185 (312)
Q Consensus 108 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~-~~~~l~~~~~~~~l~~~f~-~L~~ 185 (312)
. .-.+..+++|+.++++.+... ....+..++.++++|++|++..+ .+... ..+..+ ..++ +|++
T Consensus 134 ~-~~~l~~~~~L~~L~L~~~~~l---------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~-~~l~~~L~~ 199 (336)
T 2ast_B 134 I-VNTLAKNSNLVRLNLSGCSGF---------SEFALQTLLSSCSRLDELNLSWCFDFTEK---HVQVAV-AHVSETITQ 199 (336)
T ss_dssp H-HHHHTTCTTCSEEECTTCBSC---------CHHHHHHHHHHCTTCCEEECCCCTTCCHH---HHHHHH-HHSCTTCCE
T ss_pred H-HHHHhcCCCCCEEECCCCCCC---------CHHHHHHHHhcCCCCCEEcCCCCCCcChH---HHHHHH-HhcccCCCE
Confidence 1 112346889999988754211 12234566788999999999877 44210 011111 2477 9999
Q ss_pred EEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccccccccccCceEEEEEeEecc-hhHHHHHHH
Q 021480 186 LSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGI-RSELEFIKF 264 (312)
Q Consensus 186 L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~-~~~~~~~~~ 264 (312)
|.+..+.....+ ..++..+..+|+|+.|++..+....... . .. -...++|+.+.+.+..+. ...+ .
T Consensus 200 L~l~~~~~~~~~-~~l~~~~~~~~~L~~L~l~~~~~l~~~~-~-----~~--l~~l~~L~~L~l~~~~~~~~~~~----~ 266 (336)
T 2ast_B 200 LNLSGYRKNLQK-SDLSTLVRRCPNLVHLDLSDSVMLKNDC-F-----QE--FFQLNYLQHLSLSRCYDIIPETL----L 266 (336)
T ss_dssp EECCSCGGGSCH-HHHHHHHHHCTTCSEEECTTCTTCCGGG-G-----GG--GGGCTTCCEEECTTCTTCCGGGG----G
T ss_pred EEeCCCcccCCH-HHHHHHHhhCCCCCEEeCCCCCcCCHHH-H-----HH--HhCCCCCCEeeCCCCCCCCHHHH----H
Confidence 999654211111 2577788899999999997765210000 0 00 012367888877765322 1111 1
Q ss_pred HHccCcccceeEEecC
Q 021480 265 VLSNSPVLETMTIKPA 280 (312)
Q Consensus 265 ll~~~~~Le~~~i~~~ 280 (312)
.+.+.+.|+.+.+..+
T Consensus 267 ~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGCTTCCEEECTTS
T ss_pred HHhcCCCCCEEeccCc
Confidence 2356788888888755
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.05 E-value=7.4e-11 Score=100.80 Aligned_cols=193 Identities=20% Similarity=0.134 Sum_probs=93.2
Q ss_pred CceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeeccee-eChHHHHHHHhCCcccce
Q 021480 5 CVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLER 80 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~ 80 (312)
++++|+++... ...+|. .+..+++|+.|++++|.+.. +..+.++++|++|+++++. ++.- ....+..++.|++
T Consensus 33 ~l~~L~l~~n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 33 ASQRIFLHGNR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHT 109 (285)
T ss_dssp TCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCE
T ss_pred CceEEEeeCCc--CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCE
Confidence 44555543222 223443 34556667777776665543 3445666777777776664 4321 1223456667777
Q ss_pred eeeeccCCceeEE---EeCCCcceEEEeec-ccce---eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCC
Q 021480 81 LTLMNFDGFTHLN---IDAPNLQFFDIGGV-FDDV---TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPH 153 (312)
Q Consensus 81 L~l~~~~~~~~~~---i~~p~L~~L~~~~~-~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 153 (312)
|++.+|....... -..++|+.|.+.++ +..+ .+..+++|+.++++.+.... .+ ...+..+++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~--~~~~~~l~~ 178 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS---------VP--ERAFRGLHS 178 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE---------EC--TTTTTTCTT
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc---------cC--HHHhcCccc
Confidence 7776654221000 02356666666653 2211 23456666666665332110 00 012445666
Q ss_pred ccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480 154 IRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 154 l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
|+.|++..+.+. +..+..+. .+++|+.|.+..+.-... ....+..+++|+.|++..++
T Consensus 179 L~~L~l~~n~l~----~~~~~~~~-~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 179 LDRLLLHQNRVA----HVHPHAFR-DLGRLMTLYLFANNLSAL----PTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCEEECCSSCCC----EECTTTTT-TCTTCCEEECCSSCCSCC----CHHHHTTCTTCCEEECCSSC
T ss_pred cCEEECCCCccc----ccCHhHcc-CcccccEeeCCCCcCCcC----CHHHcccCcccCEEeccCCC
Confidence 677766665442 11122222 255666666633211110 12334566777776665554
No 21
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.05 E-value=1e-11 Score=113.28 Aligned_cols=217 Identities=17% Similarity=0.113 Sum_probs=114.0
Q ss_pred CCceEEEEEecCCc---ceecCCCcccCCcceEEEeeceeeCC--CCCC-CCCc----ccceeeecceeeCh---HHHHH
Q 021480 4 SCVKEFILEIWKGQ---RYKVPSSLFLCQNLIHLELFNCLLKP--PSTF-KGFR----NLKSLDLQHITLSQ---DVFEN 70 (312)
Q Consensus 4 ~~v~eL~l~~~~~~---~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~-~~l~----~L~~L~L~~~~~~~---~~l~~ 70 (312)
++++.|+++.+... ...+|..+..+++|++|+|++|.+.. +..+ ..++ +|++|++++|.+++ ..+..
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 45777777654321 12566666777888888888887643 1111 2333 68888888888765 24566
Q ss_pred HHhCCcccceeeeeccCCce----e----EEEeCCCcceEEEeec-ccc-------eeeecCCcceEEEEeEEEeec---
Q 021480 71 LISSSPTLERLTLMNFDGFT----H----LNIDAPNLQFFDIGGV-FDD-------VTFENTFHLALVSIGLYVNVK--- 131 (312)
Q Consensus 71 ll~~cp~Le~L~l~~~~~~~----~----~~i~~p~L~~L~~~~~-~~~-------~~~~~~~~L~~l~l~~~~~~~--- 131 (312)
.+..++.|++|++++|.... . +.-..++|++|.+.++ +.. -.+..+++|+.++++.+....
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 67788888888887764210 0 0001234555555442 110 012234555555554322100
Q ss_pred ------------CCc-------cCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEc
Q 021480 132 ------------NDQ-------AMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINF 192 (312)
Q Consensus 132 ------------~~~-------~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~ 192 (312)
... .+.......+...+..++++++|+++.+.+...........+...+++|++|.+..+.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 000 0000011123455667788888888776543111000000111125678888875443
Q ss_pred CChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480 193 NDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 193 ~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
-...++..++..+..+++|+.|++..+.
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 3334444567777888888888887654
No 22
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.04 E-value=1.9e-10 Score=102.71 Aligned_cols=235 Identities=15% Similarity=0.097 Sum_probs=126.8
Q ss_pred CCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC-CCC-CCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP-PST-FKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~-~~~-~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
+++++|+++.+.. ..+|+ .+..+++|+.|++++|.+.. +.. +..+++|++|+++++.+++. ....+..++.|++
T Consensus 93 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 169 (390)
T 3o6n_A 93 HTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQN 169 (390)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCE
T ss_pred CCcCEEECCCCCC--CcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCE
Confidence 4567777654432 24444 45678888888888887765 333 57788888888888877532 1234677888888
Q ss_pred eeeeccCCcee----------EE---------EeCCCcceEEEeec-ccceeeecCCcceEEEEeEEEeecCCccCCCCc
Q 021480 81 LTLMNFDGFTH----------LN---------IDAPNLQFFDIGGV-FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGN 140 (312)
Q Consensus 81 L~l~~~~~~~~----------~~---------i~~p~L~~L~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 140 (312)
|++.++..... +. -..++|+.|.+.++ +..+.....++|+.++++.+... .
T Consensus 170 L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~---------~ 240 (390)
T 3o6n_A 170 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT---------D 240 (390)
T ss_dssp EECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCC---------C
T ss_pred EECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCc---------c
Confidence 88887642210 00 01224444444432 11122222345555555432211 0
Q ss_pred chhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480 141 SCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 141 ~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
...+..+++++.|+++.+.+... .+..+. .+++|++|.+..+.- . .++.....+|+|+.|++..+.
T Consensus 241 ----~~~l~~l~~L~~L~Ls~n~l~~~----~~~~~~-~l~~L~~L~L~~n~l--~---~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 241 ----TAWLLNYPGLVEVDLSYNELEKI----MYHPFV-KMQRLERLYISNNRL--V---ALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp ----CGGGGGCTTCSEEECCSSCCCEE----ESGGGT-TCSSCCEEECCSSCC--C---EEECSSSCCTTCCEEECCSSC
T ss_pred ----cHHHcCCCCccEEECCCCcCCCc----ChhHcc-ccccCCEEECCCCcC--c---ccCcccCCCCCCCEEECCCCc
Confidence 03356677888888877654311 122222 356777777743311 1 123334567888888776654
Q ss_pred CCCCCcccccccccccccccccCceEEEEEeEecchhHHHHHHHHHccCcccceeEEecCC
Q 021480 221 EETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPAS 281 (312)
Q Consensus 221 ~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~~~~ 281 (312)
.... + . .-....+|+.+.+.+-.-..- . +...+.|+.+.+..++
T Consensus 307 l~~~---~-----~--~~~~l~~L~~L~L~~N~i~~~-----~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 307 LLHV---E-----R--NQPQFDRLENLYLDHNSIVTL-----K--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCC---G-----G--GHHHHTTCSEEECCSSCCCCC-----C--CCTTCCCSEEECCSSC
T ss_pred ceec---C-----c--cccccCcCCEEECCCCcccee-----C--chhhccCCEEEcCCCC
Confidence 2200 0 0 001246777777764221110 0 4567788888887765
No 23
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.03 E-value=3.1e-11 Score=117.29 Aligned_cols=192 Identities=19% Similarity=0.178 Sum_probs=105.4
Q ss_pred CceEEEEEecCCcceecCC--CcccCCcceEEEeeceeeCC--CCCC-CCCcccceeeecceeeChHHHH--HHHhCCcc
Q 021480 5 CVKEFILEIWKGQRYKVPS--SLFLCQNLIHLELFNCLLKP--PSTF-KGFRNLKSLDLQHITLSQDVFE--NLISSSPT 77 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~l~~--~~~~-~~l~~L~~L~L~~~~~~~~~l~--~ll~~cp~ 77 (312)
+++.|+++.+... -.+|. .+..+++|++|+|++|.+.. +..+ ..+++|++|+++++.+++.... ..+.+|+.
T Consensus 101 ~L~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 101 SLTSLDLSRNSLS-GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TCCEEECCSSEEE-EEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCEEECCCCcCC-CcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 4455555332211 23555 66677777777777776543 2222 5677777777777776543222 22677888
Q ss_pred cceeeeeccCCceeEE-EeCCCcceEEEeec-ccc-e-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCC
Q 021480 78 LERLTLMNFDGFTHLN-IDAPNLQFFDIGGV-FDD-V-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPH 153 (312)
Q Consensus 78 Le~L~l~~~~~~~~~~-i~~p~L~~L~~~~~-~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 153 (312)
|++|++.+|....... -..++|+.|.+.++ +.. + .+.++++|+.++++.+... ..+...+..+++
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~-----------~~~~~~l~~l~~ 248 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS-----------GDFSRAISTCTE 248 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCC-----------SCHHHHTTTCSS
T ss_pred CCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCC-----------CcccHHHhcCCC
Confidence 8888887764222111 23467888877763 211 1 2567788888887643211 112345677888
Q ss_pred ccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHh-hhcCCCcceEEEEec
Q 021480 154 IRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCL-LRSSPNLQELEMLAR 219 (312)
Q Consensus 154 l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~-L~~~p~Le~L~l~~~ 219 (312)
|+.|++..+.+ .+..+.. .+++|++|.+..+.-.. .++.. ...|++|+.|++..+
T Consensus 249 L~~L~Ls~n~l----~~~~~~~---~l~~L~~L~L~~n~l~~----~ip~~~~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 249 LKLLNISSNQF----VGPIPPL---PLKSLQYLSLAENKFTG----EIPDFLSGACDTLTGLDLSGN 304 (768)
T ss_dssp CCEEECCSSCC----EESCCCC---CCTTCCEEECCSSEEEE----SCCCCSCTTCTTCSEEECCSS
T ss_pred CCEEECCCCcc----cCccCcc---ccCCCCEEECcCCccCC----ccCHHHHhhcCcCCEEECcCC
Confidence 88888877654 2222221 36677777663221100 02222 233577777776554
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.03 E-value=4.9e-11 Score=103.49 Aligned_cols=215 Identities=15% Similarity=0.124 Sum_probs=127.5
Q ss_pred CcceEEEeeceeeCC----CCCCCCCcccceeeecc-eeeChHHHHHHHhCCcccceeeeeccCCceeEE---EeCCCcc
Q 021480 29 QNLIHLELFNCLLKP----PSTFKGFRNLKSLDLQH-ITLSQDVFENLISSSPTLERLTLMNFDGFTHLN---IDAPNLQ 100 (312)
Q Consensus 29 ~~L~~L~L~~~~l~~----~~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~---i~~p~L~ 100 (312)
.+++.|+|+++.+.. |..+..+++|++|++++ +.+.+. ++..+..++.|++|++.++.....+. -..++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 468888998887753 55678888899999885 655432 34446788889999988875432111 1346888
Q ss_pred eEEEeec-cc---ceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCC-CccEEEEeeeehhhhcccCCCCC
Q 021480 101 FFDIGGV-FD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP-HIRRLEIQSYFLKYLAIGNVPSR 175 (312)
Q Consensus 101 ~L~~~~~-~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~l~~L~l~~~~~~~l~~~~~~~~ 175 (312)
.|.+.++ +. +..+..+++|+.++++.+..... . ..-+..++ +++.|++..+.+. +..+..
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--------~---p~~l~~l~~~L~~L~L~~N~l~----~~~~~~ 193 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA--------I---PDSYGSFSKLFTSMTISRNRLT----GKIPPT 193 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE--------C---CGGGGCCCTTCCEEECCSSEEE----EECCGG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc--------C---CHHHhhhhhcCcEEECcCCeee----ccCChH
Confidence 8888763 22 12356788888888865432100 0 12244565 8888888877552 222222
Q ss_pred CCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccccccccccCceEEEEEe--Ee
Q 021480 176 LPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVG--IS 253 (312)
Q Consensus 176 l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~--~~ 253 (312)
+. .+. |+.|.++.+.-.. ..+..+..+++|+.|++..+..... .. .-....+|+++.+.+ +.
T Consensus 194 ~~-~l~-L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~---~~-------~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 194 FA-NLN-LAFVDLSRNMLEG----DASVLFGSDKNTQKIHLAKNSLAFD---LG-------KVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp GG-GCC-CSEEECCSSEEEE----CCGGGCCTTSCCSEEECCSSEECCB---GG-------GCCCCTTCCEEECCSSCCE
T ss_pred Hh-CCc-ccEEECcCCcccC----cCCHHHhcCCCCCEEECCCCceeee---cC-------cccccCCCCEEECcCCccc
Confidence 22 233 7777774321111 1345667888899888876643210 00 002246788888774 22
Q ss_pred cchhHHHHHHHHHccCcccceeEEecCC
Q 021480 254 GIRSELEFIKFVLSNSPVLETMTIKPAS 281 (312)
Q Consensus 254 ~~~~~~~~~~~ll~~~~~Le~~~i~~~~ 281 (312)
+.. ...+.+.+.|+.+.+..+.
T Consensus 258 ~~~------p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 258 GTL------PQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp ECC------CGGGGGCTTCCEEECCSSE
T ss_pred CcC------ChHHhcCcCCCEEECcCCc
Confidence 221 1124577888888887664
No 25
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.02 E-value=5.4e-11 Score=108.12 Aligned_cols=119 Identities=19% Similarity=0.219 Sum_probs=70.1
Q ss_pred CCceEEEEEecCCcceecC-CCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
.+++.|+|+.+.. ..++ ..+..+++|+.|+|++|.+.. +..+.++++|++|+|++|.++.- ....+..++.|++
T Consensus 64 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQI--QIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCC--CEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCE
T ss_pred CCCcEEEccCCcC--CeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCce
Confidence 3456666654432 2333 456677888888888876654 34567778888888888776531 1224567778888
Q ss_pred eeeeccCCceeEEE----eCCCcceEEEeec--cc---ceeeecCCcceEEEEeE
Q 021480 81 LTLMNFDGFTHLNI----DAPNLQFFDIGGV--FD---DVTFENTFHLALVSIGL 126 (312)
Q Consensus 81 L~l~~~~~~~~~~i----~~p~L~~L~~~~~--~~---~~~~~~~~~L~~l~l~~ 126 (312)
|++.++.... +.. ..++|+.|.+.+. .. ...+..+++|+.++++.
T Consensus 141 L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 141 LWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp EECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred eeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 8887764321 111 2356777776651 11 11244567777777654
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.02 E-value=8.3e-11 Score=107.13 Aligned_cols=35 Identities=6% Similarity=0.193 Sum_probs=23.1
Q ss_pred ccCceEEEEEe--EecchhHHHHHHHHHccCcccceeEEecCC
Q 021480 241 FSQLRMVKIVG--ISGIRSELEFIKFVLSNSPVLETMTIKPAS 281 (312)
Q Consensus 241 ~~~L~~v~i~~--~~~~~~~~~~~~~ll~~~~~Le~~~i~~~~ 281 (312)
.++|+.+.+.+ +.+.. ...+.+.+.|+.+.+..++
T Consensus 370 l~~L~~L~L~~N~l~~~~------~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVP------DGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CTTCCEEECCSSCCSCCC------TTTTTTCTTCCEEECCSSC
T ss_pred cccccEEECCCCccccCC------HhHhccCCcccEEEccCCC
Confidence 46788888775 22211 1234678899999998776
No 27
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.01 E-value=1.6e-10 Score=105.39 Aligned_cols=185 Identities=17% Similarity=0.160 Sum_probs=125.3
Q ss_pred EecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc
Q 021480 12 EIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF 89 (312)
Q Consensus 12 ~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~ 89 (312)
++.......+|..+. ++++.|+|++|.+.. +..+.++++|+.|+|+++.+++. ....+.++++|++|++.+|...
T Consensus 60 ~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 60 VCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp ECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCS
T ss_pred EECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCC
Confidence 344444457777654 689999999998764 56788999999999999987642 2245688999999999988532
Q ss_pred eeEE----EeCCCcceEEEeec-ccc---eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEee
Q 021480 90 THLN----IDAPNLQFFDIGGV-FDD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS 161 (312)
Q Consensus 90 ~~~~----i~~p~L~~L~~~~~-~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 161 (312)
. +. -..++|+.|.+.++ +.. ..+..+++|+.++++.+..... .+ ...+.++++|+.|+++.
T Consensus 137 ~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~--------i~--~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 137 V-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY--------IS--EGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp B-CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE--------EC--TTTTTTCTTCCEEECTT
T ss_pred c-cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccc--------cC--hhhccCCCCCCEEECCC
Confidence 1 11 13578999999874 222 2356789999999875322111 00 12366789999999998
Q ss_pred eehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480 162 YFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 162 ~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
+.+..+ + .+. .+++|+.|.++.+.-. + ..+..+..+++|+.|.+..+..
T Consensus 206 n~l~~~-----~-~~~-~l~~L~~L~Ls~N~l~--~--~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 206 CNIKDM-----P-NLT-PLVGLEELEMSGNHFP--E--IRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp SCCSSC-----C-CCT-TCTTCCEEECTTSCCS--E--ECGGGGTTCTTCCEEECTTSCC
T ss_pred Cccccc-----c-ccc-ccccccEEECcCCcCc--c--cCcccccCccCCCEEEeCCCcC
Confidence 865422 2 122 4778998888433211 1 1245678999999999977643
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.99 E-value=2.6e-10 Score=107.66 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=54.8
Q ss_pred CCceEEEEEecCCcceecCCC-cccCCcceEEEeeceeeCC-CCC-CCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP-PST-FKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~-~~~-~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
.+++.|+++.+.. ..+|+. +..+++|+.|+|++|.+.. |+. +..+++|++|+|++|.+++. .+..+..++.|+.
T Consensus 99 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 175 (597)
T 3oja_B 99 HTIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQN 175 (597)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcC--CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcE
Confidence 3566777654432 345544 4678888888888887765 333 57888888888888877542 2234677888888
Q ss_pred eeeeccC
Q 021480 81 LTLMNFD 87 (312)
Q Consensus 81 L~l~~~~ 87 (312)
|++.+|.
T Consensus 176 L~L~~N~ 182 (597)
T 3oja_B 176 LQLSSNR 182 (597)
T ss_dssp EECTTSC
T ss_pred EECcCCC
Confidence 8887764
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.99 E-value=7.1e-10 Score=101.67 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=85.8
Q ss_pred CceEEEEEecCCcceec-CCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480 5 CVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 81 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 81 (312)
+++.|+++.... ..+ |..+..+++|+.|+|++|.+.. +..+.++++|++|+|+++.++.- ....+..++.|++|
T Consensus 33 ~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 109 (477)
T 2id5_A 33 ETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKL 109 (477)
T ss_dssp TCSEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEE
T ss_pred CCcEEECCCCcc--ceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEE
Confidence 456666543332 244 3456677888888888886653 45677788888888888776531 12245677888888
Q ss_pred eeeccCCceeEE---EeCCCcceEEEeec-cc---ceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCc
Q 021480 82 TLMNFDGFTHLN---IDAPNLQFFDIGGV-FD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHI 154 (312)
Q Consensus 82 ~l~~~~~~~~~~---i~~p~L~~L~~~~~-~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l 154 (312)
++.+|....... -..++|+.|.+.++ +. ...+..+++|+.++++.+.... .+ ...+..+++|
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~--~~~l~~l~~L 178 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS---------IP--TEALSHLHGL 178 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS---------CC--HHHHTTCTTC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc---------cC--hhHhcccCCC
Confidence 887764321100 12367777777763 22 1235567778887776442110 00 2335566677
Q ss_pred cEEEEeeeeh
Q 021480 155 RRLEIQSYFL 164 (312)
Q Consensus 155 ~~L~l~~~~~ 164 (312)
+.|++..+.+
T Consensus 179 ~~L~l~~n~i 188 (477)
T 2id5_A 179 IVLRLRHLNI 188 (477)
T ss_dssp CEEEEESCCC
T ss_pred cEEeCCCCcC
Confidence 7777766544
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.99 E-value=9.1e-11 Score=106.87 Aligned_cols=83 Identities=22% Similarity=0.241 Sum_probs=47.2
Q ss_pred CCceEEEEEecCCcceecC-CCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHH-HHHhCCcccc
Q 021480 4 SCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFE-NLISSSPTLE 79 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le 79 (312)
++++.|+++.+... ..+| ..+..+++|++|+|++|.+.. +..+.++++|++|++++|.+++..+. ..+..++.|+
T Consensus 54 ~~L~~L~L~~n~~~-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~ 132 (455)
T 3v47_A 54 QDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132 (455)
T ss_dssp TTCCEEECCCCSTT-CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred ccccEEECcCCccc-ceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence 34566665433221 1343 345566777777777775543 44566777777777777766543222 2255666666
Q ss_pred eeeeeccC
Q 021480 80 RLTLMNFD 87 (312)
Q Consensus 80 ~L~l~~~~ 87 (312)
+|++.+|.
T Consensus 133 ~L~L~~n~ 140 (455)
T 3v47_A 133 MLVLRDNN 140 (455)
T ss_dssp EEECCSSB
T ss_pred EEECCCCc
Confidence 66666553
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.99 E-value=3.2e-11 Score=113.96 Aligned_cols=67 Identities=24% Similarity=0.293 Sum_probs=39.5
Q ss_pred ecCCC-cccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480 20 KVPSS-LFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 20 ~lp~~-l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~ 87 (312)
.+|.. +..+++|+.|++++|.+.. |..+..+++|++|+++++.+.+. .+..+..+|.|+.|++.+|.
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~ 336 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNT 336 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCS
T ss_pred ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCC
Confidence 44443 4456677777777776554 44566667777777777665432 12334566666666666553
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.99 E-value=1.5e-10 Score=101.67 Aligned_cols=230 Identities=14% Similarity=0.099 Sum_probs=142.4
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeece-eeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT 82 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~-~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 82 (312)
+++++|+++.+.. ..+|. +..+++|+.|++++| ....++.+..+++|+.|+++++.+.+... +..++.|++|+
T Consensus 110 ~~L~~L~l~~n~i--~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~ 183 (347)
T 4fmz_A 110 TNLRELYLNEDNI--SDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLS 183 (347)
T ss_dssp TTCSEEECTTSCC--CCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEE
T ss_pred CcCCEEECcCCcc--cCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEE
Confidence 4567777754332 34554 678899999999999 44555568889999999999998764321 67899999999
Q ss_pred eeccCCceeE-EEeCCCcceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEE
Q 021480 83 LMNFDGFTHL-NIDAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEI 159 (312)
Q Consensus 83 l~~~~~~~~~-~i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l 159 (312)
+.+|.....- --..++|+.+.+.++ +..+ .+..+++|+.++++.+... ..+ . +..+++++.|++
T Consensus 184 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~---------~~~---~-~~~l~~L~~L~l 250 (347)
T 4fmz_A 184 LNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT---------DLS---P-LANLSQLTWLEI 250 (347)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC---------CCG---G-GTTCTTCCEEEC
T ss_pred ccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccC---------CCc---c-hhcCCCCCEEEC
Confidence 9987532100 113467888887773 2222 2567888999988654321 111 1 567888999988
Q ss_pred eeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccccccc
Q 021480 160 QSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTS 239 (312)
Q Consensus 160 ~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~ 239 (312)
+.+.+..+ ..+ ..+++|++|.++.+. ..+ + ..+..+|+|+.|++..+..... ... .-.
T Consensus 251 ~~n~l~~~------~~~-~~l~~L~~L~l~~n~--l~~---~-~~~~~l~~L~~L~L~~n~l~~~---~~~------~l~ 308 (347)
T 4fmz_A 251 GTNQISDI------NAV-KDLTKLKMLNVGSNQ--ISD---I-SVLNNLSQLNSLFLNNNQLGNE---DME------VIG 308 (347)
T ss_dssp CSSCCCCC------GGG-TTCTTCCEEECCSSC--CCC---C-GGGGGCTTCSEEECCSSCCCGG---GHH------HHH
T ss_pred CCCccCCC------hhH-hcCCCcCEEEccCCc--cCC---C-hhhcCCCCCCEEECcCCcCCCc---Chh------Hhh
Confidence 87755321 112 236788888874432 121 2 2457888899888877642210 000 002
Q ss_pred cccCceEEEEEeEecchhHHHHHHHHHccCcccceeEEecC
Q 021480 240 LFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIKPA 280 (312)
Q Consensus 240 ~~~~L~~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~~~ 280 (312)
...+|+.+.+.+-.-... .. +...+.|+.+.+..+
T Consensus 309 ~l~~L~~L~L~~n~l~~~----~~--~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 309 GLTNLTTLFLSQNHITDI----RP--LASLSKMDSADFANQ 343 (347)
T ss_dssp TCTTCSEEECCSSSCCCC----GG--GGGCTTCSEESSSCC
T ss_pred ccccCCEEEccCCccccc----cC--hhhhhccceeehhhh
Confidence 246788888775321111 01 567788888777655
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.98 E-value=6.9e-11 Score=108.82 Aligned_cols=61 Identities=11% Similarity=0.038 Sum_probs=31.0
Q ss_pred hhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480 148 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 148 l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
...+++|+.|+++.+.+..+ +. .. .+++|+.|.++.+.-. .++.-+..+++|+.|++..+.
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~-----~~-~~-~l~~L~~L~Ls~N~l~-----~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 165 AASSDTLEHLNLQYNFIYDV-----KG-QV-VFAKLKTLDLSSNKLA-----FMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp GGGTTTCCEEECTTSCCCEE-----EC-CC-CCTTCCEEECCSSCCC-----EECGGGGGGTTCSEEECTTSC
T ss_pred hhhCCcccEEecCCCccccc-----cc-cc-cCCCCCEEECCCCCCC-----CCCHhHcCCCCccEEEecCCc
Confidence 33566777777766654321 11 11 2556776666433211 122224566777777775543
No 34
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.98 E-value=2.2e-10 Score=99.07 Aligned_cols=184 Identities=15% Similarity=0.134 Sum_probs=117.4
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM 84 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 84 (312)
++++|++.... ...+| .+..+++|+.|++++|.+...+.+..+++|+.|+++++.+++- . .+..++.|+.|++.
T Consensus 42 ~L~~L~l~~~~--i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTG--VTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSC--CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEECT
T ss_pred CcCEEEeeCCC--ccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEECC
Confidence 45566653332 23455 5677889999999999877644488889999999999887652 2 46788999999998
Q ss_pred ccCCceeE-EEeCCCcceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEee
Q 021480 85 NFDGFTHL-NIDAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS 161 (312)
Q Consensus 85 ~~~~~~~~-~i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 161 (312)
+|.....- --..++|+.|.+.++ +..+ .+..+++|+.++++.+... ..+ . +..+++|+.|+++.
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~---------~~~---~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS---------DLT---P-LANLSKLTTLKADD 182 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC---------CCG---G-GTTCTTCCEEECCS
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCC---------CCh---h-hcCCCCCCEEECCC
Confidence 87532100 013467888888773 2222 2567788888888644211 111 1 56788888888887
Q ss_pred eehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480 162 YFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 162 ~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
+.+..+. .+ ..+++|++|.++.+.- .+ +.. +..+|+|+.|.+..+.
T Consensus 183 n~l~~~~------~l-~~l~~L~~L~L~~N~l--~~---~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 183 NKISDIS------PL-ASLPNLIEVHLKNNQI--SD---VSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp SCCCCCG------GG-GGCTTCCEEECTTSCC--CB---CGG-GTTCTTCCEEEEEEEE
T ss_pred CccCcCh------hh-cCCCCCCEEEccCCcc--Cc---ccc-ccCCCCCCEEEccCCe
Confidence 7553211 12 2477888888743321 11 222 5788899998888764
No 35
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.98 E-value=1.3e-10 Score=98.75 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=29.3
Q ss_pred CCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021480 28 CQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 86 (312)
Q Consensus 28 ~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~ 86 (312)
+++|+.|.+.++.+...+.+..+++|+.|+++++.+++- ..+..++.|++|++.+|
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGN 95 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTS
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCC
Confidence 455555555555554444455555555555555554431 13445555555555554
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.97 E-value=2.8e-10 Score=103.42 Aligned_cols=182 Identities=19% Similarity=0.205 Sum_probs=113.9
Q ss_pred ecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce
Q 021480 13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT 90 (312)
Q Consensus 13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~ 90 (312)
+.......+|..+. ++++.|+|++|.+.. +..+.++++|+.|+|+++.++.- ....+.++++|++|++.+|....
T Consensus 50 c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~ 126 (440)
T 3zyj_A 50 CVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTT 126 (440)
T ss_dssp CCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSS
T ss_pred eCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCe
Confidence 44444457887764 689999999998764 46788999999999999987642 12357889999999999884321
Q ss_pred eEE----EeCCCcceEEEeec-ccc---eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeee
Q 021480 91 HLN----IDAPNLQFFDIGGV-FDD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSY 162 (312)
Q Consensus 91 ~~~----i~~p~L~~L~~~~~-~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~ 162 (312)
+. -..++|+.|.+.++ +.. ..+..+++|+.++++.+..... .+ ...+.++++|+.|++..+
T Consensus 127 -~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~--------i~--~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 127 -IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY--------IS--EGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp -CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCE--------EC--TTTTTTCSSCCEEECTTS
T ss_pred -eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcce--------eC--cchhhcccccCeecCCCC
Confidence 11 13478999999874 222 2356789999999875321110 00 123556778888888776
Q ss_pred ehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021480 163 FLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR 219 (312)
Q Consensus 163 ~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~ 219 (312)
.+..+ +. +. .+++|+.|.++.+.-. ++ .+..+..+++|+.|.+..+
T Consensus 196 ~l~~~-----~~-~~-~l~~L~~L~Ls~N~l~--~~--~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 196 NLREI-----PN-LT-PLIKLDELDLSGNHLS--AI--RPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CCSSC-----CC-CT-TCSSCCEEECTTSCCC--EE--CTTTTTTCTTCCEEECTTC
T ss_pred cCccc-----cc-cC-CCcccCEEECCCCccC--cc--ChhhhccCccCCEEECCCC
Confidence 55322 11 11 3556666666322111 00 1234456666666666544
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.96 E-value=5.1e-10 Score=102.63 Aligned_cols=79 Identities=23% Similarity=0.197 Sum_probs=38.0
Q ss_pred CceEEEEEecCCcceecCCC-cccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480 5 CVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 81 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 81 (312)
+++.|+++.+. ...+|.. +..+++|+.|+|++|.+.. +..+..+++|+.|+++++.+.+. ....+..+++|+.|
T Consensus 81 ~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 157 (477)
T 2id5_A 81 NLRTLGLRSNR--LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQL 157 (477)
T ss_dssp TCCEEECCSSC--CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE-CTTSSTTCTTCCEE
T ss_pred cCCEEECCCCc--CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee-ChhhccCCCCCCEE
Confidence 45566654332 2244543 3455666666666665432 23445555555555555544321 01123445555555
Q ss_pred eeecc
Q 021480 82 TLMNF 86 (312)
Q Consensus 82 ~l~~~ 86 (312)
++.+|
T Consensus 158 ~l~~n 162 (477)
T 2id5_A 158 TLEKC 162 (477)
T ss_dssp EEESC
T ss_pred ECCCC
Confidence 55544
No 38
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.96 E-value=1.9e-10 Score=97.53 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=51.1
Q ss_pred cCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480 14 WKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 14 ~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~ 87 (312)
+......+|..+. ++|+.|++++|.+.. +..+..+++|++|+|+++.++.- ....+..++.|++|++.++.
T Consensus 24 ~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 24 SSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSC
T ss_pred cCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCc
Confidence 3333346776553 678999999998765 23578899999999999887531 12345778999999998774
No 39
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.96 E-value=4.5e-11 Score=103.89 Aligned_cols=59 Identities=12% Similarity=0.073 Sum_probs=29.1
Q ss_pred hcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021480 149 VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR 219 (312)
Q Consensus 149 ~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~ 219 (312)
..+++++.|+++.+.+..+ +.. . .+++|++|.++.+.-. .++..+..+++|+.|++..+
T Consensus 166 ~~l~~L~~L~L~~N~l~~~-----~~~-~-~l~~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDV-----KGQ-V-VFAKLKTLDLSSNKLA-----FMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp GGTTTCCEEECTTSCCCEE-----ECC-C-CCTTCCEEECCSSCCC-----EECGGGGGGTTCSEEECTTS
T ss_pred hccCcCCEEECCCCcCccc-----ccc-c-ccccCCEEECCCCcCC-----cchhhhcccCcccEEECcCC
Confidence 3556666666666544322 111 1 2556666666432111 12222456677777776554
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.95 E-value=5.2e-10 Score=102.35 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=72.0
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 83 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 83 (312)
++++.|+++.+.. ..+|+ +..+++|+.|++++|.+...+.+..+++|++|+++++.+++-. . +..++.|++|++
T Consensus 68 ~~L~~L~Ls~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQL--TDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEEE
T ss_pred cCCCEEECCCCcc--CCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEEC
Confidence 4567777754432 34555 7778889999998888766444788888999988888776432 2 678888888888
Q ss_pred eccCCcee-EEEeCCCcceEEEeecccce-eeecCCcceEEEEe
Q 021480 84 MNFDGFTH-LNIDAPNLQFFDIGGVFDDV-TFENTFHLALVSIG 125 (312)
Q Consensus 84 ~~~~~~~~-~~i~~p~L~~L~~~~~~~~~-~~~~~~~L~~l~l~ 125 (312)
.+|..... .--..++|+.|.+.+..... .+.++++|+.++++
T Consensus 142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185 (466)
T ss_dssp EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECc
Confidence 87742110 00123456666655432211 23455556666554
No 41
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=3.9e-10 Score=110.18 Aligned_cols=123 Identities=13% Similarity=0.132 Sum_probs=86.6
Q ss_pred CCceEEEEEecCCcc-------e---------ecCCCcc--cCCcceEEEeeceeeCC--CCCCCCCcccceeeeccee-
Q 021480 4 SCVKEFILEIWKGQR-------Y---------KVPSSLF--LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT- 62 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~-------~---------~lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~- 62 (312)
++++.|+|+.+.... . .+|..+. .+++|+.|+|++|.+.. |..+.++++|+.|+|++|.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 467888886554221 1 2899987 99999999999997643 6678899999999999998
Q ss_pred eChHHHHHHHh-------CCcccceeeeeccCCceeEEE-----eCCCcceEEEeec-ccce-eeecCCcceEEEEeEE
Q 021480 63 LSQDVFENLIS-------SSPTLERLTLMNFDGFTHLNI-----DAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLY 127 (312)
Q Consensus 63 ~~~~~l~~ll~-------~cp~Le~L~l~~~~~~~~~~i-----~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~ 127 (312)
+++..++..+. .+|.|+.|++.+|... .+.- ..++|+.|.++++ +..+ .+..+++|+.++++.+
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN 605 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSS
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCC
Confidence 87633444333 4569999999988643 2221 3467888888763 2222 4567778888877644
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.93 E-value=2.3e-10 Score=108.07 Aligned_cols=199 Identities=17% Similarity=0.080 Sum_probs=127.7
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT 82 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 82 (312)
++++|+++.+. ...+|..+..+++|++|++++|.+.. +..+..+++|++|+++++.+.+......+..++.|++|+
T Consensus 279 ~L~~L~l~~n~--l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 279 GLQELDLTATH--LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TCSEEECTTSC--CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred CCCEEeccCCc--cCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 45555553332 34788888889999999999997764 446788999999999998765432233467899999999
Q ss_pred eeccCCceeEE-----EeCCCcceEEEeec-ccc---eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCC
Q 021480 83 LMNFDGFTHLN-----IDAPNLQFFDIGGV-FDD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPH 153 (312)
Q Consensus 83 l~~~~~~~~~~-----i~~p~L~~L~~~~~-~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 153 (312)
+.+|....... -..++|+.|.+.++ +.. ..+..+++|+.++++.+...... + ...+..+++
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~--~~~~~~l~~ 426 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD--------A--QSPFQNLHL 426 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT--------T--CCTTTTCTT
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc--------c--chhhhCccc
Confidence 98876433211 13478888888874 222 23557888999988754432110 0 122557889
Q ss_pred ccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480 154 IRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 154 l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
++.|+++.+.+. +..+..+. .+++|++|.+..+.-....+ .....+..+++|+.|++..+..
T Consensus 427 L~~L~l~~n~l~----~~~~~~~~-~l~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 427 LKVLNLSHSLLD----ISSEQLFD-GLPALQHLNLQGNHFPKGNI-QKTNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp CCEEECTTCCCB----TTCTTTTT-TCTTCCEEECTTCBCGGGEE-CSSCGGGGCTTCCEEECTTSCC
T ss_pred CCEEECCCCccC----CcCHHHHh-CCCCCCEEECCCCCCCcccc-ccchhhccCCCccEEECCCCcc
Confidence 999999877652 22222222 47789988884332111000 0123468899999999987653
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=1.4e-10 Score=113.21 Aligned_cols=145 Identities=11% Similarity=0.057 Sum_probs=83.9
Q ss_pred CceEEEEEecCCcceecCC--CcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcc-ccee
Q 021480 5 CVKEFILEIWKGQRYKVPS--SLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT-LERL 81 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le~L 81 (312)
+++.|+++.+.. ..+|. .+..+++|+.|+|++|.+...+.+..+++|+.|+|++|.++ .++..+..++. |+.|
T Consensus 549 ~L~~L~Ls~N~L--~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L 624 (876)
T 4ecn_A 549 KIQIFYMGYNNL--EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGL 624 (876)
T ss_dssp TCCEEECCSSCC--CBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEE
T ss_pred CccEEEeeCCcC--CccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCEE
Confidence 566666644433 27777 77777888888888886655346777888888888888775 34445677777 8888
Q ss_pred eeeccCCceeEEE-----eCCCcceEEEeecc-----ccee--ee--cCCcceEEEEeEEEeecCCccCCCCcchhHHHH
Q 021480 82 TLMNFDGFTHLNI-----DAPNLQFFDIGGVF-----DDVT--FE--NTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRF 147 (312)
Q Consensus 82 ~l~~~~~~~~~~i-----~~p~L~~L~~~~~~-----~~~~--~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 147 (312)
++.+|... .+.- ..++|+.|.++++. ..+. +. ..++|+.++++.+... ..+ ..+
T Consensus 625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~---------~lp--~~~ 692 (876)
T 4ecn_A 625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ---------KFP--TEL 692 (876)
T ss_dssp ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC---------SCC--HHH
T ss_pred ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC---------ccC--HHH
Confidence 88776422 1110 11236666666531 1110 11 2346666666543211 011 233
Q ss_pred hhcCCCccEEEEeeeehh
Q 021480 148 FVHLPHIRRLEIQSYFLK 165 (312)
Q Consensus 148 l~~l~~l~~L~l~~~~~~ 165 (312)
+..+++|+.|+++.+.+.
T Consensus 693 ~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 693 FATGSPISTIILSNNLMT 710 (876)
T ss_dssp HHTTCCCSEEECCSCCCS
T ss_pred HccCCCCCEEECCCCcCC
Confidence 446677777777766543
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.92 E-value=7.6e-10 Score=96.51 Aligned_cols=116 Identities=17% Similarity=0.163 Sum_probs=64.9
Q ss_pred CCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
.+++.|+++... ...+|. .+..+++|+.|+|++|.+.. |..+..+++|++|+++++.++. ++. ..++.|++
T Consensus 52 ~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~--~~~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPE--KMPKTLQE 125 (330)
T ss_dssp TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCS--SCCTTCCE
T ss_pred CCCeEEECCCCc--CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cCh--hhcccccE
Confidence 355666664433 235555 56678889999998887754 4567788888888888887652 111 11256666
Q ss_pred eeeeccCCceeE---EEeCCCcceEEEeecc------cceeeecCCcceEEEEe
Q 021480 81 LTLMNFDGFTHL---NIDAPNLQFFDIGGVF------DDVTFENTFHLALVSIG 125 (312)
Q Consensus 81 L~l~~~~~~~~~---~i~~p~L~~L~~~~~~------~~~~~~~~~~L~~l~l~ 125 (312)
|++.++...... --..++|+.|.+.++. ....+..+++|+.++++
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 666655321100 0023455555555421 11123445556665554
No 45
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.91 E-value=9.1e-10 Score=104.71 Aligned_cols=122 Identities=11% Similarity=0.182 Sum_probs=84.4
Q ss_pred CCceEEEEEecCCccee-----------------cCCCcc--cCCcceEEEeeceeeCC--CCCCCCCcccceeeeccee
Q 021480 4 SCVKEFILEIWKGQRYK-----------------VPSSLF--LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT 62 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~-----------------lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~ 62 (312)
+++++|+++..... .. +|..+. .+++|+.|+|++|.+.. |..+..+++|++|++++|.
T Consensus 206 ~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 206 TKLRQFYMGNSPFV-AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp TTCCEEEEESCCCC-GGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred cCCCEEECcCCccc-cccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 46788888654422 11 999999 99999999999997654 6778999999999999998
Q ss_pred -eChHHHHHHHhC------CcccceeeeeccCCceeEEE-----eCCCcceEEEeec-cc-ce-eeecCCcceEEEEeEE
Q 021480 63 -LSQDVFENLISS------SPTLERLTLMNFDGFTHLNI-----DAPNLQFFDIGGV-FD-DV-TFENTFHLALVSIGLY 127 (312)
Q Consensus 63 -~~~~~l~~ll~~------cp~Le~L~l~~~~~~~~~~i-----~~p~L~~L~~~~~-~~-~~-~~~~~~~L~~l~l~~~ 127 (312)
+++..++..+.. ++.|+.|++.+|... .+.- ..++|+.|.+.++ +. .+ .+..+++|+.++++.+
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence 887345544443 588999999887533 2221 3357777777653 11 11 3455667777776544
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.90 E-value=1e-09 Score=102.78 Aligned_cols=223 Identities=15% Similarity=0.115 Sum_probs=104.9
Q ss_pred cCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEE-----Ee
Q 021480 21 VPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN-----ID 95 (312)
Q Consensus 21 lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~-----i~ 95 (312)
+|..+..+ +|+.|++++|.+...+. ..+++|+.|++.++.+.+.. . ...+|.|++|++.+|....... ..
T Consensus 297 l~~~~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~-~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 371 (570)
T 2z63_A 297 VKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAF-S--EVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371 (570)
T ss_dssp CCBCCSCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBC-C--CCBCTTCCEEECCSSCCBEEEEEEHHHHT
T ss_pred hhhhhccC-CccEEeeccCcccccCc-ccccccCEEeCcCCcccccc-c--cccCCCCCEEeCcCCccCccccccccccc
Confidence 44444444 44555554444432111 24455555555554432210 0 0455666666665554321110 02
Q ss_pred CCCcceEEEeec-ccce--eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCC
Q 021480 96 APNLQFFDIGGV-FDDV--TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNV 172 (312)
Q Consensus 96 ~p~L~~L~~~~~-~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~ 172 (312)
.++|+.|.+.++ +..+ .+..+++|+.++++.+...... + ...+.++++|+.|++..+.+. +..
T Consensus 372 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~--~~~~~~l~~L~~L~l~~n~l~----~~~ 437 (570)
T 2z63_A 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS--------E--FSVFLSLRNLIYLDISHTHTR----VAF 437 (570)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCT--------T--SCTTTTCTTCCEEECTTSCCE----ECC
T ss_pred cCccCEEECCCCccccccccccccCCCCEEEccCCcccccc--------c--hhhhhcCCCCCEEeCcCCccc----ccc
Confidence 356666666552 1111 1456666777666543322110 0 012446677777777665442 122
Q ss_pred CCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccccccccccCceEEEEEe-
Q 021480 173 PSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVG- 251 (312)
Q Consensus 173 ~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~- 251 (312)
+..+. .+++|+.|.+..+.-... .++..+..+++|+.|++..+..... ... + -...++|+.+.+.+
T Consensus 438 ~~~~~-~l~~L~~L~l~~n~l~~~---~~p~~~~~l~~L~~L~l~~n~l~~~---~~~-~-----~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 438 NGIFN-GLSSLEVLKMAGNSFQEN---FLPDIFTELRNLTFLDLSQCQLEQL---SPT-A-----FNSLSSLQVLNMASN 504 (570)
T ss_dssp TTTTT-TCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSCCCEE---CTT-T-----TTTCTTCCEEECCSS
T ss_pred hhhhh-cCCcCcEEECcCCcCccc---cchhhhhcccCCCEEECCCCccccC---Chh-h-----hhcccCCCEEeCCCC
Confidence 22222 366777777632211100 1344567778888887765532200 000 0 01236777777764
Q ss_pred -EecchhHHHHHHHHHccCcccceeEEecCC
Q 021480 252 -ISGIRSELEFIKFVLSNSPVLETMTIKPAS 281 (312)
Q Consensus 252 -~~~~~~~~~~~~~ll~~~~~Le~~~i~~~~ 281 (312)
+.+.. ...+.+.+.|+.+.+..++
T Consensus 505 ~l~~~~------~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 505 QLKSVP------DGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCSCCC------TTTTTTCTTCCEEECCSSC
T ss_pred cCCCCC------HHHhhcccCCcEEEecCCc
Confidence 22221 1234567788888887765
No 47
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.88 E-value=1.7e-09 Score=101.22 Aligned_cols=232 Identities=14% Similarity=0.115 Sum_probs=147.9
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHH-HHHHHhCCcccceeee
Q 021480 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDV-FENLISSSPTLERLTL 83 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~-l~~ll~~cp~Le~L~l 83 (312)
++++|++..+.. ..+|. ..+++|+.|++.+|..........+++|+.|+++++.+++.. ....+..++.|++|++
T Consensus 305 ~L~~L~l~~n~~--~~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 380 (570)
T 2z63_A 305 GWQHLELVNCKF--GQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380 (570)
T ss_dssp CCSEEEEESCBC--SSCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEEC
T ss_pred CccEEeeccCcc--cccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEEC
Confidence 344455433322 25665 367899999999998765333478999999999999876421 2345678999999999
Q ss_pred eccCCcee--EEEeCCCcceEEEeec-cc---c-eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccE
Q 021480 84 MNFDGFTH--LNIDAPNLQFFDIGGV-FD---D-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRR 156 (312)
Q Consensus 84 ~~~~~~~~--~~i~~p~L~~L~~~~~-~~---~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~ 156 (312)
.+|..... .--..++|+.|.+.++ +. . ..+..+++|+.++++.+..... ....+.++++|+.
T Consensus 381 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~ 449 (570)
T 2z63_A 381 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-----------FNGIFNGLSSLEV 449 (570)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-----------CTTTTTTCTTCCE
T ss_pred CCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-----------chhhhhcCCcCcE
Confidence 98864321 1225689999998873 21 1 2356789999999875432211 0133667899999
Q ss_pred EEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCccccccccccc
Q 021480 157 LEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDH 236 (312)
Q Consensus 157 L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~ 236 (312)
|++..+.+. .+..|..+. .+++|+.|.++.+.-. + ..+..+..+|+|+.|++..+..... +...+
T Consensus 450 L~l~~n~l~---~~~~p~~~~-~l~~L~~L~l~~n~l~--~--~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~---- 514 (570)
T 2z63_A 450 LKMAGNSFQ---ENFLPDIFT-ELRNLTFLDLSQCQLE--Q--LSPTAFNSLSSLQVLNMASNQLKSV---PDGIF---- 514 (570)
T ss_dssp EECTTCEEG---GGEECSCCT-TCTTCCEEECTTSCCC--E--ECTTTTTTCTTCCEEECCSSCCSCC---CTTTT----
T ss_pred EECcCCcCc---cccchhhhh-cccCCCEEECCCCccc--c--CChhhhhcccCCCEEeCCCCcCCCC---CHHHh----
Confidence 999987653 223333333 4788998888433211 1 1244568899999999987653210 00000
Q ss_pred ccccccCceEEEEEe--EecchhHHHHH-HHHHcc
Q 021480 237 WTSLFSQLRMVKIVG--ISGIRSELEFI-KFVLSN 268 (312)
Q Consensus 237 ~~~~~~~L~~v~i~~--~~~~~~~~~~~-~~ll~~ 268 (312)
...++|+.+.+.+ +.+......++ .++-++
T Consensus 515 --~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~ 547 (570)
T 2z63_A 515 --DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN 547 (570)
T ss_dssp --TTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHT
T ss_pred --hcccCCcEEEecCCcccCCCcchHHHHHHHHhc
Confidence 1247899999885 55555555555 554443
No 48
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.88 E-value=7.8e-10 Score=100.94 Aligned_cols=115 Identities=11% Similarity=0.065 Sum_probs=77.1
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 83 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 83 (312)
+++++|+++.... ..+| .+..+++|++|++++|.+...+ ++.+++|+.|+++++.+++-. +..++.|++|++
T Consensus 42 ~~L~~L~Ls~n~l--~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSI--TDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCC--CCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCc--ccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee----cCCCCcCCEEEC
Confidence 3566666654332 2445 5778888999999888877653 778888888888888876532 678888888888
Q ss_pred eccCCceeEEE-eCCCcceEEEeec-ccceeeecCCcceEEEEeEE
Q 021480 84 MNFDGFTHLNI-DAPNLQFFDIGGV-FDDVTFENTFHLALVSIGLY 127 (312)
Q Consensus 84 ~~~~~~~~~~i-~~p~L~~L~~~~~-~~~~~~~~~~~L~~l~l~~~ 127 (312)
.+|.-.. +.+ ..++|+.|.+.++ +..+.+..+++|+.++++.+
T Consensus 114 ~~N~l~~-l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 114 DTNKLTK-LDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLN 158 (457)
T ss_dssp CSSCCSC-CCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTC
T ss_pred CCCcCCe-ecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCC
Confidence 8774322 222 3357777777663 33444566777777776543
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.87 E-value=6.9e-10 Score=95.69 Aligned_cols=189 Identities=17% Similarity=0.160 Sum_probs=118.0
Q ss_pred EEecCCcceecCCCcccCCcceEEEeeceeeCC-CC-CCCCCcccceeeecceeeChH-HHHHHHhCCcccceeeeeccC
Q 021480 11 LEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PS-TFKGFRNLKSLDLQHITLSQD-VFENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 11 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~-~~~~l~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~l~~~~ 87 (312)
+++.......+|..+. ++|+.|++++|.+.. +. .+..+++|+.|+++++.++.. .....+..++.|++|+++++.
T Consensus 12 l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 3344444457777654 689999999998865 33 368999999999999987632 112334578999999999885
Q ss_pred Cce--eEEEeCCCcceEEEeec-ccc----eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480 88 GFT--HLNIDAPNLQFFDIGGV-FDD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 160 (312)
Q Consensus 88 ~~~--~~~i~~p~L~~L~~~~~-~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 160 (312)
... ..-...++|+.|.+.++ +.. ..+..+++|+.++++.+..... ....+..+++++.|++.
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~l~~L~~L~l~ 158 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-----------FNGIFNGLSSLEVLKMA 158 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-----------STTTTTTCTTCCEEECT
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-----------chhhcccCcCCCEEECC
Confidence 332 11224678999988773 221 1356788999998865432110 01235567888888887
Q ss_pred eeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480 161 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 161 ~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
.+.+.. ...+..+. .+++|++|.++.+.-.. ..+..+..+|+|+.|++..+.
T Consensus 159 ~n~l~~---~~~~~~~~-~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 159 GNSFQE---NFLPDIFT-ELRNLTFLDLSQCQLEQ----LSPTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp TCEEGG---GEECSCCT-TCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSC
T ss_pred CCcccc---ccchhHHh-hCcCCCEEECCCCCcCC----cCHHHhcCCCCCCEEECCCCc
Confidence 765531 11222222 36677877774331111 013445677888888886654
No 50
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.86 E-value=5.1e-11 Score=106.34 Aligned_cols=233 Identities=17% Similarity=0.126 Sum_probs=147.0
Q ss_pred CCceEEEEEecCC---cceecCCCcccCCcceEEEeeceeeCC-----CCC-------CCCCcccceeeecceeeChH--
Q 021480 4 SCVKEFILEIWKG---QRYKVPSSLFLCQNLIHLELFNCLLKP-----PST-------FKGFRNLKSLDLQHITLSQD-- 66 (312)
Q Consensus 4 ~~v~eL~l~~~~~---~~~~lp~~l~~~~~L~~L~L~~~~l~~-----~~~-------~~~l~~L~~L~L~~~~~~~~-- 66 (312)
+++++|+++.+.. ....++..+..+++|++|+|++|.+.. |.. +..+++|++|+|++|.+++.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 4678888754321 223456667789999999999985432 222 25789999999999998764
Q ss_pred -HHHHHHhCCcccceeeeeccCCcee--EEE-----eC---------CCcceEEEeec-cc--ce-----eeecCCcceE
Q 021480 67 -VFENLISSSPTLERLTLMNFDGFTH--LNI-----DA---------PNLQFFDIGGV-FD--DV-----TFENTFHLAL 121 (312)
Q Consensus 67 -~l~~ll~~cp~Le~L~l~~~~~~~~--~~i-----~~---------p~L~~L~~~~~-~~--~~-----~~~~~~~L~~ 121 (312)
.+...+..|+.|+.|++.+|..... ..+ .. ++|++|.+.++ +. .+ .+..+++|+.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 4667789999999999999864210 001 11 89999999874 21 11 2446889999
Q ss_pred EEEeEEEeecCCccCCCCcchhHHH-HhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHH
Q 021480 122 VSIGLYVNVKNDQAMGPGNSCKLLR-FFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLA 200 (312)
Q Consensus 122 l~l~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~ 200 (312)
++++.+.... .....+.+ .+..+++|+.|+++.+.+........+..+. .+++|++|.++.+.-...+...
T Consensus 192 L~L~~n~l~~-------~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 192 VKMVQNGIRP-------EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp EECCSSCCCH-------HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEECTTCCCCHHHHHH
T ss_pred EECcCCCCCH-------hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEECCCCCCchhhHHH
Confidence 9987542110 01111223 5668899999999988662110011121222 4778999998544333344445
Q ss_pred HHHhhhc--CCCcceEEEEeccCCCCCccccccccccccccc---ccCceEEEEEe
Q 021480 201 ALCLLRS--SPNLQELEMLARPEETGIGVLTNFWEVDHWTSL---FSQLRMVKIVG 251 (312)
Q Consensus 201 l~~~L~~--~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~---~~~L~~v~i~~ 251 (312)
++..+.. +|+|+.|.+..+.....+. ...+... +++|+.+.+.+
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~-------~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAV-------RTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHH-------HHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHH-------HHHHHHHHhcCCCceEEEccC
Confidence 6677755 9999999998765321000 0012222 48899999885
No 51
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.85 E-value=1.3e-09 Score=91.39 Aligned_cols=71 Identities=24% Similarity=0.229 Sum_probs=52.2
Q ss_pred cCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480 14 WKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 14 ~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~ 87 (312)
.......+|..+. ++++.|+|++|.+.. +..+.++++|+.|+|+++.+++. ....+..++.|++|++.++.
T Consensus 22 ~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 22 QGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC
T ss_pred CCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc
Confidence 4333457777654 688999999998765 34578899999999999887642 23346788899999998774
No 52
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.84 E-value=1.2e-09 Score=87.99 Aligned_cols=142 Identities=20% Similarity=0.185 Sum_probs=83.2
Q ss_pred cCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce---eEEEeCCCcceEE
Q 021480 27 LCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT---HLNIDAPNLQFFD 103 (312)
Q Consensus 27 ~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~---~~~i~~p~L~~L~ 103 (312)
.+++|+.|++++|.+...+.+..+++|++|++++|.++.- ..++.+|.|++|++.+|.... ..--..++|+.|.
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC---GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc---hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4566666777666665533566666777777766654321 135566677777776653221 0001235666666
Q ss_pred Eeec-ccc---eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcc
Q 021480 104 IGGV-FDD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRP 179 (312)
Q Consensus 104 ~~~~-~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~ 179 (312)
++++ +.. -.+..+++|+.++++.+.... .. ..+..+++|+.|+++.+.+.. .+ .+. .
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~--------~~----~~l~~l~~L~~L~l~~n~i~~-----~~-~l~-~ 179 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT--------DI----MPLKTLPELKSLNIQFDGVHD-----YR-GIE-D 179 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC--------CC----GGGGGCSSCCEEECTTBCCCC-----CT-TGG-G
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc--------cc----HhhcCCCCCCEEECCCCCCcC-----hH-Hhc-c
Confidence 6653 221 135578899999887553111 11 236678999999998886642 22 222 4
Q ss_pred cCCcceEEEEE
Q 021480 180 CVDLNYLSIRI 190 (312)
Q Consensus 180 f~~L~~L~l~~ 190 (312)
+++|++|.+..
T Consensus 180 l~~L~~L~l~~ 190 (197)
T 4ezg_A 180 FPKLNQLYAFS 190 (197)
T ss_dssp CSSCCEEEECB
T ss_pred CCCCCEEEeeC
Confidence 78899888843
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.84 E-value=1.6e-09 Score=101.85 Aligned_cols=236 Identities=16% Similarity=0.150 Sum_probs=140.7
Q ss_pred ecCCCcccCCcceEEEeeceeeCC--CC-CCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc--------CC
Q 021480 20 KVPSSLFLCQNLIHLELFNCLLKP--PS-TFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF--------DG 88 (312)
Q Consensus 20 ~lp~~l~~~~~L~~L~L~~~~l~~--~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~--------~~ 88 (312)
.+|..+..+++|++|++++|.+.+ .. .+..+++|++|++.++ +++..+..+...||.|++|++.+| ..
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~ 358 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA 358 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence 344444467888888888887543 11 1357888999998888 666667777778899999988543 22
Q ss_pred cee-----EEEeCCCcceEEEeec-ccce---ee-ecCCcceEEEEeEEE--eecCCccCC-CCcchhHHHHhhcCCCcc
Q 021480 89 FTH-----LNIDAPNLQFFDIGGV-FDDV---TF-ENTFHLALVSIGLYV--NVKNDQAMG-PGNSCKLLRFFVHLPHIR 155 (312)
Q Consensus 89 ~~~-----~~i~~p~L~~L~~~~~-~~~~---~~-~~~~~L~~l~l~~~~--~~~~~~~~~-~~~~~~~~~~l~~l~~l~ 155 (312)
+.. +.-..|+|+.|.+.+. +... .+ ..+|+|+.+++.... .+.. +. ......+..++.++++|+
T Consensus 359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~---l~~~~~~~~~~~l~~~~~~L~ 435 (594)
T 2p1m_B 359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDY---LTLEPLDIGFGAIVEHCKDLR 435 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT---TTCCCTHHHHHHHHHHCTTCC
T ss_pred CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccc---ccCCchhhHHHHHHhhCCCcc
Confidence 211 1113689999966552 2211 12 258999999987321 1110 00 001234556678899999
Q ss_pred EEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccc
Q 021480 156 RLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVD 235 (312)
Q Consensus 156 ~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~ 235 (312)
.|++++. +. . .....+...+++|+.|.+..+... + .++..+...||+|+.|++..+..... ....+
T Consensus 436 ~L~L~~~-l~---~-~~~~~l~~~~~~L~~L~L~~~~i~--~-~~~~~l~~~~~~L~~L~L~~n~~~~~---~~~~~--- 501 (594)
T 2p1m_B 436 RLSLSGL-LT---D-KVFEYIGTYAKKMEMLSVAFAGDS--D-LGMHHVLSGCDSLRKLEIRDCPFGDK---ALLAN--- 501 (594)
T ss_dssp EEECCSS-CC---H-HHHHHHHHHCTTCCEEEEESCCSS--H-HHHHHHHHHCTTCCEEEEESCSCCHH---HHHHT---
T ss_pred EEeecCc-cc---H-HHHHHHHHhchhccEeeccCCCCc--H-HHHHHHHhcCCCcCEEECcCCCCcHH---HHHHH---
Confidence 9999652 21 1 111111123678999999654322 2 24666778899999999998764210 00000
Q ss_pred cccccccCceEEEEEeEecchhHHHHHHHHHccCcccceeEEe
Q 021480 236 HWTSLFSQLRMVKIVGISGIRSELEFIKFVLSNSPVLETMTIK 278 (312)
Q Consensus 236 ~~~~~~~~L~~v~i~~~~~~~~~~~~~~~ll~~~~~Le~~~i~ 278 (312)
. ...++|+.+.+.++...... ++.+.+..+.|+...+.
T Consensus 502 -~-~~l~~L~~L~l~~~~~~~~~---~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 502 -A-SKLETMRSLWMSSCSVSFGA---CKLLGQKMPKLNVEVID 539 (594)
T ss_dssp -G-GGGGGSSEEEEESSCCBHHH---HHHHHHHCTTEEEEEEC
T ss_pred -H-HhCCCCCEEeeeCCCCCHHH---HHHHHHhCCCCEEEEec
Confidence 1 12479999999987664433 44455566777554444
No 54
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.84 E-value=1.9e-10 Score=109.33 Aligned_cols=146 Identities=12% Similarity=0.092 Sum_probs=80.9
Q ss_pred CCceEEEEEecCCcceecCC--CcccCCcceEEEeeceeeC-CCCCCCCCcccceeeecceeeChHHHHHHHhCCcc-cc
Q 021480 4 SCVKEFILEIWKGQRYKVPS--SLFLCQNLIHLELFNCLLK-PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPT-LE 79 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~--~l~~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~-Le 79 (312)
.++++|+++.+.. ..+|. .+..+++|+.|++++|.+. ..+.+..+++|+.|+++++.++ .++..+..++. |+
T Consensus 305 ~~L~~L~L~~n~l--~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~ 380 (636)
T 4eco_A 305 EKIQIIYIGYNNL--KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVE 380 (636)
T ss_dssp GTCCEEECCSSCC--SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCC
T ss_pred CCCCEEECCCCcC--CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccCc
Confidence 4556666544332 26676 6667777777777777665 3236667777777777777665 34444666777 77
Q ss_pred eeeeeccCCceeEE--E---eCCCcceEEEeec-ccc---eeee-------cCCcceEEEEeEEEeecCCccCCCCcchh
Q 021480 80 RLTLMNFDGFTHLN--I---DAPNLQFFDIGGV-FDD---VTFE-------NTFHLALVSIGLYVNVKNDQAMGPGNSCK 143 (312)
Q Consensus 80 ~L~l~~~~~~~~~~--i---~~p~L~~L~~~~~-~~~---~~~~-------~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 143 (312)
.|++.+|... .+. + ..++|+.|.+.++ +.. -.+. .+++|+.++++.+... ..+
T Consensus 381 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~---------~lp- 449 (636)
T 4eco_A 381 NLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS---------KFP- 449 (636)
T ss_dssp EEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC---------SCC-
T ss_pred EEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC---------cCC-
Confidence 7777766422 111 0 1125666666652 111 1122 4556777766543211 001
Q ss_pred HHHHhhcCCCccEEEEeeeehh
Q 021480 144 LLRFFVHLPHIRRLEIQSYFLK 165 (312)
Q Consensus 144 ~~~~l~~l~~l~~L~l~~~~~~ 165 (312)
..++..+++|+.|+++.+.+.
T Consensus 450 -~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 450 -KELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp -THHHHTTCCCSEEECCSSCCS
T ss_pred -HHHHccCCCCCEEECCCCCCC
Confidence 133445677777777766543
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.84 E-value=3.1e-09 Score=104.32 Aligned_cols=65 Identities=18% Similarity=0.298 Sum_probs=34.0
Q ss_pred CCCcccCCcceEEEeeceeeCC--CCC--CCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021480 22 PSSLFLCQNLIHLELFNCLLKP--PST--FKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 86 (312)
Q Consensus 22 p~~l~~~~~L~~L~L~~~~l~~--~~~--~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~ 86 (312)
|..+..+++|+.|+|++|.+.. +.. +..+++|++|+|++|.+++......++.+++|++|++.++
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 4445555555555555555432 222 4555666666666655543222234556666666666554
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.84 E-value=5.5e-09 Score=102.53 Aligned_cols=119 Identities=16% Similarity=0.057 Sum_probs=68.2
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 81 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 81 (312)
.++++|+++.+... .-.|..+..+++|+.|+|++|.+.. +..+.++++|+.|+|++|.+++. ....+..+|.|+.|
T Consensus 266 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 343 (844)
T 3j0a_A 266 SSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYI 343 (844)
T ss_dssp SCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSCTTCCEE
T ss_pred CCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCCCCCCEE
Confidence 56777777433322 1234445567788888888876643 44567788888888888776432 12345677778888
Q ss_pred eeeccCCceeEE----EeCCCcceEEEeecccceeeecCCcceEEEEeE
Q 021480 82 TLMNFDGFTHLN----IDAPNLQFFDIGGVFDDVTFENTFHLALVSIGL 126 (312)
Q Consensus 82 ~l~~~~~~~~~~----i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~ 126 (312)
++.+|.... +. -..++|+.|.+.++... .+..+++|+.++++.
T Consensus 344 ~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 344 DLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDIFLSG 390 (844)
T ss_dssp ECCSCCCCC-CCSSCSCSCCCCCEEEEETCCSC-CCSSCCSCSEEEEES
T ss_pred ECCCCCCCc-cChhhhcCCCCCCEEECCCCCCC-cccCCCCcchhccCC
Confidence 777663211 11 12456777766663211 122255566555543
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.82 E-value=1.7e-10 Score=99.93 Aligned_cols=183 Identities=14% Similarity=0.081 Sum_probs=116.3
Q ss_pred eecCCCcc-------cCCcceEEEeeceeeCC--CCCC--CCCcccceeeecceeeChH--HHHHHHh-CCcccceeeee
Q 021480 19 YKVPSSLF-------LCQNLIHLELFNCLLKP--PSTF--KGFRNLKSLDLQHITLSQD--VFENLIS-SSPTLERLTLM 84 (312)
Q Consensus 19 ~~lp~~l~-------~~~~L~~L~L~~~~l~~--~~~~--~~l~~L~~L~L~~~~~~~~--~l~~ll~-~cp~Le~L~l~ 84 (312)
..+|..+. .+++|++|+|++|.+.. |..+ ..+++|+.|+|+++.+++. .+..+-. .++.|++|+++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~ 157 (312)
T 1wwl_A 78 ARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157 (312)
T ss_dssp EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEE
T ss_pred CCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEee
Confidence 35665554 67899999999998863 5554 7899999999999998653 2222211 23899999999
Q ss_pred ccCCceeE---EEeCCCcceEEEeecc-c-------ceeeecCCcceEEEEeEEEeecCCccCCCCcc-hhHHHHhhcCC
Q 021480 85 NFDGFTHL---NIDAPNLQFFDIGGVF-D-------DVTFENTFHLALVSIGLYVNVKNDQAMGPGNS-CKLLRFFVHLP 152 (312)
Q Consensus 85 ~~~~~~~~---~i~~p~L~~L~~~~~~-~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~~~~~~l~~l~ 152 (312)
+|...... --..++|+.|.++++- . .+.+..+++|++++++.+... .. .....++..++
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~---------~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 158 QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME---------TPSGVCSALAAARV 228 (312)
T ss_dssp SCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC---------CHHHHHHHHHHTTC
T ss_pred CCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc---------chHHHHHHHHhcCC
Confidence 88532110 0145789999998742 1 122367899999998754211 11 11234556789
Q ss_pred CccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480 153 HIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 153 ~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
+|+.|+++.+.+. +..+......+++|++|.++.+.-. .++..+. ++|+.|++..+..
T Consensus 229 ~L~~L~Ls~N~l~----~~~~~~~~~~l~~L~~L~Ls~N~l~-----~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 229 QLQGLDLSHNSLR----DAAGAPSCDWPSQLNSLNLSFTGLK-----QVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp CCSEEECTTSCCC----SSCCCSCCCCCTTCCEEECTTSCCS-----SCCSSCC--SEEEEEECCSSCC
T ss_pred CCCEEECCCCcCC----cccchhhhhhcCCCCEEECCCCccC-----hhhhhcc--CCceEEECCCCCC
Confidence 9999999988653 2121111123578998888433211 1333222 8999999987653
No 58
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.82 E-value=6.5e-09 Score=96.29 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=39.9
Q ss_pred hcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480 149 VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 149 ~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
..++++++|+++.+.+. +..+..+. .+++|+.|.++.+ ...++..++..+..+++|+.|++..+..
T Consensus 321 ~~l~~L~~L~Ls~n~l~----~~~~~~~~-~l~~L~~L~L~~N--~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLT----DTVFENCG-HLTELETLILQMN--QLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp SSCCCCCEEECCSSCCC----TTTTTTCC-CCSSCCEEECCSS--CCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred hhCCcccEEEeECCccC----hhhhhhhc-cCCCCCEEEccCC--ccCccccchHHHhhCCCCCEEECCCCcC
Confidence 45566677776665442 22233332 4778888887433 2233334666778899999999887643
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.81 E-value=4.6e-10 Score=98.06 Aligned_cols=199 Identities=15% Similarity=0.081 Sum_probs=101.6
Q ss_pred CCceEEEEEecCCcceecC-CCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
++++.|+++.+.. ..+| ..+..+++|+.|++++|.+.. +..+..+++|++|+++++.++. ++.. ..+.|++
T Consensus 54 ~~l~~L~l~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~--~~~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPPN--LPSSLVE 127 (332)
T ss_dssp TTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCSS--CCTTCCE
T ss_pred CCCeEEECCCCcC--CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCcc--ccccCCE
Confidence 3567777654432 3454 467788889999998887654 4567788888999888887652 1111 1267888
Q ss_pred eeeeccCCceeEE----EeCCCcceEEEeecc-c-----ceeeecCCcceEEEEeEEEeecCCc-------cCCCC--cc
Q 021480 81 LTLMNFDGFTHLN----IDAPNLQFFDIGGVF-D-----DVTFENTFHLALVSIGLYVNVKNDQ-------AMGPG--NS 141 (312)
Q Consensus 81 L~l~~~~~~~~~~----i~~p~L~~L~~~~~~-~-----~~~~~~~~~L~~l~l~~~~~~~~~~-------~~~~~--~~ 141 (312)
|++.++.... +. -..++|+.|.+.++. . ...+..+ +|+.++++.+....-.. ..... ..
T Consensus 128 L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 128 LRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKI 205 (332)
T ss_dssp EECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCC
T ss_pred EECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcC
Confidence 8877664221 11 123567777766531 1 1112222 44444443221110000 00000 00
Q ss_pred -hhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480 142 -CKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 142 -~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
......+..+++++.|++..+.+..+ .+..+ ..+++|++|.+..+.-. .++..+..+++|+.|++..+.
T Consensus 206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~----~~~~~-~~l~~L~~L~L~~N~l~-----~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 206 QAIELEDLLRYSKLYRLGLGHNQIRMI----ENGSL-SFLPTLRELHLDNNKLS-----RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CCCCTTSSTTCTTCSCCBCCSSCCCCC----CTTGG-GGCTTCCEEECCSSCCC-----BCCTTGGGCTTCCEEECCSSC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCcC----ChhHh-hCCCCCCEEECCCCcCe-----ecChhhhcCccCCEEECCCCC
Confidence 00001244566777777766544211 11112 23566777766433111 234445677777777776654
No 60
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.81 E-value=1.2e-09 Score=95.31 Aligned_cols=178 Identities=20% Similarity=0.151 Sum_probs=116.7
Q ss_pred ceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE-
Q 021480 18 RYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI- 94 (312)
Q Consensus 18 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i- 94 (312)
...+|..+. ++|+.|++++|.+.. +..+..+++|++|+++++.+++. .+..+..++.|++|++.++.... +..
T Consensus 43 l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~-l~~~ 118 (330)
T 1xku_A 43 LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQLKE-LPEK 118 (330)
T ss_dssp CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCSB-CCSS
T ss_pred ccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEEECCCCcCCc-cChh
Confidence 346676553 689999999998865 33588999999999999987642 23457889999999999875321 110
Q ss_pred eCCCcceEEEeec-ccce---eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhccc
Q 021480 95 DAPNLQFFDIGGV-FDDV---TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIG 170 (312)
Q Consensus 95 ~~p~L~~L~~~~~-~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~ 170 (312)
..++|+.|.+.++ +..+ .+..+++|+.++++.+..... ......+.++++|+.|++..+.+..
T Consensus 119 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------~~~~~~~~~l~~L~~L~l~~n~l~~---- 185 (330)
T 1xku_A 119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------GIENGAFQGMKKLSYIRIADTNITT---- 185 (330)
T ss_dssp CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------GBCTTGGGGCTTCCEEECCSSCCCS----
T ss_pred hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc---------CcChhhccCCCCcCEEECCCCcccc----
Confidence 1268999999874 2222 356789999999875432110 0011336678999999998775532
Q ss_pred CCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480 171 NVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 171 ~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
.+.. .+++|++|.+..+.-... .+..+..+++|+.|++..+.
T Consensus 186 -l~~~---~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 186 -IPQG---LPPSLTELHLDGNKITKV----DAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp -CCSS---CCTTCSEEECTTSCCCEE----CTGGGTTCTTCCEEECCSSC
T ss_pred -CCcc---ccccCCEEECCCCcCCcc----CHHHhcCCCCCCEEECCCCc
Confidence 2222 236788877743311110 13455778888888887654
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.81 E-value=7.5e-10 Score=95.47 Aligned_cols=198 Identities=19% Similarity=0.123 Sum_probs=113.1
Q ss_pred CCceEEEEEecCCc-ceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480 4 SCVKEFILEIWKGQ-RYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 81 (312)
Q Consensus 4 ~~v~eL~l~~~~~~-~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 81 (312)
+++++|+++..... ....|..+..+++|+.|++++|.+.. +..+..+++|++|+++++.+++......+..++.|++|
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 131 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE
T ss_pred ccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEE
Confidence 45677776543321 11234555667888888888886654 34467788888888888877542222346778888888
Q ss_pred eeeccCCceeEE---EeCCCcceEEEeec-cc----ceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCC
Q 021480 82 TLMNFDGFTHLN---IDAPNLQFFDIGGV-FD----DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPH 153 (312)
Q Consensus 82 ~l~~~~~~~~~~---i~~p~L~~L~~~~~-~~----~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 153 (312)
++.+|....... -..++|+.|.+.++ +. ...+..+++|+.++++.+..... . ...+..+++
T Consensus 132 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------~---~~~~~~l~~ 200 (306)
T 2z66_A 132 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL--------S---PTAFNSLSS 200 (306)
T ss_dssp ECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE--------C---TTTTTTCTT
T ss_pred ECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc--------C---HHHhcCCCC
Confidence 888774321100 02367888877763 21 12355678888888764321100 0 123456788
Q ss_pred ccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCC-CcceEEEEeccC
Q 021480 154 IRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSP-NLQELEMLARPE 221 (312)
Q Consensus 154 l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p-~Le~L~l~~~~~ 221 (312)
|+.|+++.+.+..+ .+..+ ..+++|++|.++.+.-.. ..+..+..+| +|+.|++..++.
T Consensus 201 L~~L~L~~N~l~~~----~~~~~-~~l~~L~~L~L~~N~l~~----~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 201 LQVLNMSHNNFFSL----DTFPY-KCLNSLQVLDYSLNHIMT----SKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCEEECTTSCCSBC----CSGGG-TTCTTCCEEECTTSCCCB----CSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCEEECCCCccCcc----Chhhc-cCcccCCEeECCCCCCcc----cCHHHHHhhhccCCEEEccCCCe
Confidence 88888877655311 11111 236677777774332111 1233445554 788888876654
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.80 E-value=4.6e-10 Score=95.38 Aligned_cols=140 Identities=19% Similarity=0.197 Sum_probs=84.6
Q ss_pred EEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCC
Q 021480 11 LEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG 88 (312)
Q Consensus 11 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~ 88 (312)
+++.......+|..+. ++|++|++++|.+.. +..+.++++|+.|+++++.++.- ....+..++.|++|++.++..
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCcc
Confidence 3344434456776553 568888888887654 33567788888888888876532 122456778888888877743
Q ss_pred ceeEE----EeCCCcceEEEeec-c---cceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480 89 FTHLN----IDAPNLQFFDIGGV-F---DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 160 (312)
Q Consensus 89 ~~~~~----i~~p~L~~L~~~~~-~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 160 (312)
.. +. -..++|+.|.+.++ + ....+..+++|+.++++.+..... . +...+..+++|+.|+++
T Consensus 89 ~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~---l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 89 QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-------K---LPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp CE-ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-------C---CCGGGGGCTTCCEEECC
T ss_pred Cc-cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-------c---CchhhccCCCCCEEECC
Confidence 21 11 12367777777652 2 223456778888888764332110 0 01235667888888887
Q ss_pred eeeh
Q 021480 161 SYFL 164 (312)
Q Consensus 161 ~~~~ 164 (312)
.+.+
T Consensus 158 ~N~l 161 (276)
T 2z62_A 158 SNKI 161 (276)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7654
No 63
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.80 E-value=1.2e-10 Score=103.05 Aligned_cols=248 Identities=12% Similarity=0.088 Sum_probs=130.9
Q ss_pred cCCCcccCCcceEEEeeceeeCCC------CCCCCCc-ccceeeecceeeChH---HHHHHHhCC-cccceeeeeccCCc
Q 021480 21 VPSSLFLCQNLIHLELFNCLLKPP------STFKGFR-NLKSLDLQHITLSQD---VFENLISSS-PTLERLTLMNFDGF 89 (312)
Q Consensus 21 lp~~l~~~~~L~~L~L~~~~l~~~------~~~~~l~-~L~~L~L~~~~~~~~---~l~~ll~~c-p~Le~L~l~~~~~~ 89 (312)
+|..+...++|+.|+|++|.+... ..+..++ +|++|+|++|.+++. .+..++..+ +.|++|++++|...
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 333334455688888888877652 2355677 888888888887643 445555554 88888888887532
Q ss_pred eeEE------E-eC-CCcceEEEeec-cccee-------eec-CCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCC
Q 021480 90 THLN------I-DA-PNLQFFDIGGV-FDDVT-------FEN-TFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP 152 (312)
Q Consensus 90 ~~~~------i-~~-p~L~~L~~~~~-~~~~~-------~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 152 (312)
.... + .. ++|+.|.++++ +.... +.. .++|++++++.+.... .....+...+...+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-------~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI-------KSSDELIQILAAIP 166 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG-------SCHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH-------HHHHHHHHHHhcCC
Confidence 1100 0 11 68888888773 22111 122 3588888886543211 11223344455565
Q ss_pred -CccEEEEeeeehhhhcccCCCCCCCccc-CCcceEEEEEEcCChhhHHHHHHhhhc-CCCcceEEEEeccCCCCCcccc
Q 021480 153 -HIRRLEIQSYFLKYLAIGNVPSRLPRPC-VDLNYLSIRINFNDLEENLAALCLLRS-SPNLQELEMLARPEETGIGVLT 229 (312)
Q Consensus 153 -~l~~L~l~~~~~~~l~~~~~~~~l~~~f-~~L~~L~l~~~~~~~~~~~~l~~~L~~-~p~Le~L~l~~~~~~~~~~~~~ 229 (312)
+++.|+++.+.+...........+. .+ .+|++|.++.+.-...+...++..+.. +++|+.|++..+.....+....
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 245 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLA-SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH
T ss_pred ccccEeeecCCCCchhhHHHHHHHHH-hCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH
Confidence 8888888877653111000000111 23 478888885442222333446665555 5689988887764321110000
Q ss_pred cccccccccccccCceEEEEEeEe---cchhHHHHHHHHHccCcccceeEEecCC
Q 021480 230 NFWEVDHWTSLFSQLRMVKIVGIS---GIRSELEFIKFVLSNSPVLETMTIKPAS 281 (312)
Q Consensus 230 ~~w~~~~~~~~~~~L~~v~i~~~~---~~~~~~~~~~~ll~~~~~Le~~~i~~~~ 281 (312)
..+ -....+|+.+.+.+-. -....+..+...+.+.+.|+.+.+..+.
T Consensus 246 ~~~-----~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 246 KLL-----KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHT-----TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHH-----HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 000 0123678888877543 1222233333233344455555554443
No 64
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.80 E-value=3.1e-09 Score=94.85 Aligned_cols=208 Identities=19% Similarity=0.102 Sum_probs=135.9
Q ss_pred CCceEEEEEecCCcceecCCCc-ccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKVPSSL-FLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
.++++|+++.+. ...+|..+ ..+++|++|++++|.+.. +..+..+++|++|+++++.+++.. +..+|.|+.
T Consensus 117 ~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~ 190 (390)
T 3o6n_A 117 PLLTVLVLERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH 190 (390)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSE
T ss_pred CCCCEEECCCCc--cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccce
Confidence 456777775443 34788875 578999999999998764 345789999999999999886532 355667766
Q ss_pred eeeeccCC--------ceeEE-----------EeCCCcceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCC
Q 021480 81 LTLMNFDG--------FTHLN-----------IDAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPG 139 (312)
Q Consensus 81 L~l~~~~~--------~~~~~-----------i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 139 (312)
|++.++.. +..+. ...++|+.|.+.++ +... .+..+++|++++++.+.....
T Consensus 191 L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~------- 263 (390)
T 3o6n_A 191 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI------- 263 (390)
T ss_dssp EECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE-------
T ss_pred eecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc-------
Confidence 66655421 11111 12358999998874 2222 356789999999975432110
Q ss_pred cchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021480 140 NSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR 219 (312)
Q Consensus 140 ~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~ 219 (312)
. ...+..+++|+.|++..+.+..+ +... ..+++|+.|.++.+.-. .++..+..+++|+.|++..+
T Consensus 264 -~---~~~~~~l~~L~~L~L~~n~l~~~-----~~~~-~~l~~L~~L~L~~n~l~-----~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 264 -M---YHPFVKMQRLERLYISNNRLVAL-----NLYG-QPIPTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp -E---SGGGTTCSSCCEEECCSSCCCEE-----ECSS-SCCTTCCEEECCSSCCC-----CCGGGHHHHTTCSEEECCSS
T ss_pred -C---hhHccccccCCEEECCCCcCccc-----Cccc-CCCCCCCEEECCCCcce-----ecCccccccCcCCEEECCCC
Confidence 0 13366789999999998866432 1111 24789999998544221 23444567899999999876
Q ss_pred cCCCCCcccccccccccccccccCceEEEEEe
Q 021480 220 PEETGIGVLTNFWEVDHWTSLFSQLRMVKIVG 251 (312)
Q Consensus 220 ~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~ 251 (312)
..... +-...++|+.+.+.+
T Consensus 329 ~i~~~------------~~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 329 SIVTL------------KLSTHHTLKNLTLSH 348 (390)
T ss_dssp CCCCC------------CCCTTCCCSEEECCS
T ss_pred cccee------------CchhhccCCEEEcCC
Confidence 53210 112247888888875
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.80 E-value=6.6e-10 Score=94.40 Aligned_cols=197 Identities=15% Similarity=0.182 Sum_probs=120.3
Q ss_pred CCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
+++++|+++... ...+|. .+..+++|+.|++++|.+.. +..+..+++|++|+++++.+++. ....+..++.|++
T Consensus 28 ~~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCE
T ss_pred CCccEEECCCCc--ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccccE
Confidence 356777764333 235555 56778999999999997754 34578899999999999987542 1235678999999
Q ss_pred eeeeccCCce--eEEE-eCCCcceEEEeec-ccc----eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCC
Q 021480 81 LTLMNFDGFT--HLNI-DAPNLQFFDIGGV-FDD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLP 152 (312)
Q Consensus 81 L~l~~~~~~~--~~~i-~~p~L~~L~~~~~-~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 152 (312)
|++.++.... ...+ ..++|+.|.+.++ +.. -.+..+++|+.++++.+..... ....+ .-+..++
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~-~~l~~L~ 176 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-------YCTDL-RVLHQMP 176 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-------CGGGG-HHHHTCT
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-------CHHHh-hhhhhcc
Confidence 9998875321 1111 3478999988874 222 2356789999998875432110 01111 2233344
Q ss_pred Ccc-EEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480 153 HIR-RLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 153 ~l~-~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
.+. .|+++.+.+..+.. . .. ...+|+.|.++.+.- ..+ ....+..+++|+.|++..++.
T Consensus 177 ~l~l~L~ls~n~l~~~~~----~-~~-~~~~L~~L~L~~n~l--~~~--~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFIQP----G-AF-KEIRLKELALDTNQL--KSV--PDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp TCCEEEECCSSCCCEECT----T-SS-CSCCEEEEECCSSCC--SCC--CTTTTTTCCSCCEEECCSSCB
T ss_pred ccceeeecCCCcccccCc----c-cc-CCCcccEEECCCCce--eec--CHhHhcccccccEEEccCCcc
Confidence 443 77777765532211 1 11 133688877743321 111 133567889999999877653
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.79 E-value=2.8e-09 Score=90.24 Aligned_cols=177 Identities=20% Similarity=0.173 Sum_probs=101.1
Q ss_pred CCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC-C-CCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
.++++|+++.... ..+|. .+..+++|+.|++++|.+.. + ..+..+++|++|+++++.++.- ....+..++.|++
T Consensus 37 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCE
T ss_pred CCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCE
Confidence 3567777754432 35665 57789999999999998865 3 3357899999999999987642 1235678999999
Q ss_pred eeeeccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480 81 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 160 (312)
Q Consensus 81 L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 160 (312)
|++.++.... .....+..+++|+.++++.+..... + ...+..+++|+.|++.
T Consensus 114 L~l~~n~l~~-----------------~~~~~~~~l~~L~~L~Ls~n~l~~~---------~--~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 114 LRLDRNQLKS-----------------LPPRVFDSLTKLTYLSLGYNELQSL---------P--KGVFDKLTSLKELRLY 165 (270)
T ss_dssp EECCSSCCCC-----------------CCTTTTTTCTTCCEEECCSSCCCCC---------C--TTTTTTCTTCCEEECC
T ss_pred EECCCCccCe-----------------eCHHHhCcCcCCCEEECCCCcCCcc---------C--HhHccCCcccceeEec
Confidence 9998774321 1111233456666666653321100 0 0124456666666666
Q ss_pred eeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480 161 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 161 ~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
.+.+..+ .+..+. .+++|++|.+..+.- ..+ ....+..+++|+.|.+..++
T Consensus 166 ~n~l~~~----~~~~~~-~l~~L~~L~L~~N~l--~~~--~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 166 NNQLKRV----PEGAFD-KLTELKTLKLDNNQL--KRV--PEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SSCCSCC----CTTTTT-TCTTCCEEECCSSCC--SCC--CTTTTTTCTTCCEEECCSSC
T ss_pred CCcCcEe----ChhHhc-cCCCcCEEECCCCcC--CcC--CHHHhccccCCCEEEecCCC
Confidence 5544211 111111 255666666632211 100 11234566677777666554
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.79 E-value=1.6e-08 Score=93.71 Aligned_cols=136 Identities=18% Similarity=0.160 Sum_probs=94.0
Q ss_pred EEecCCcceecCCCcccCCcceEEEeeceeeCCC--CCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCC
Q 021480 11 LEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG 88 (312)
Q Consensus 11 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~ 88 (312)
++++......+|..+. ++|++|++++|.+... ..+.++++|++|+|+++.+++. .+..+..++.|++|+++++.-
T Consensus 5 l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 5 VDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp EECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCC
T ss_pred EecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCce
Confidence 3344444457887765 8999999999988653 3578899999999999987642 234578899999999998854
Q ss_pred ceeEEE-eCCCcceEEEeec-ccc----eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCc--cEEEEe
Q 021480 89 FTHLNI-DAPNLQFFDIGGV-FDD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHI--RRLEIQ 160 (312)
Q Consensus 89 ~~~~~i-~~p~L~~L~~~~~-~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~L~l~ 160 (312)
. .+.. ..++|++|.++++ +.. -.+..+++|+.++++.+.... .-+..++++ +.|++.
T Consensus 82 ~-~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--------------~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 82 V-KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--------------SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp C-EEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--------------GGGGGGTTSCEEEEEEE
T ss_pred e-ecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--------------hhccccccceeeEEEee
Confidence 3 2221 5678999998874 222 246688999999987543210 113455666 888887
Q ss_pred eeeh
Q 021480 161 SYFL 164 (312)
Q Consensus 161 ~~~~ 164 (312)
.+.+
T Consensus 147 ~n~l 150 (520)
T 2z7x_B 147 LGET 150 (520)
T ss_dssp ECTT
T ss_pred cccc
Confidence 6644
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.78 E-value=4.5e-09 Score=90.82 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=116.3
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 83 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 83 (312)
+++++|+++.+.. ..+|. +..+++|+.|++++|.+...+.+..+++|+.|+++++.+++- .. +..+++|+.|++
T Consensus 63 ~~L~~L~L~~n~i--~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQI--TDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCC--CCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEEC
T ss_pred CCCCEEEccCCcC--CCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEEC
Confidence 4677777754432 35565 778999999999999988877788999999999999998652 22 789999999999
Q ss_pred eccCCceeE-EEeCCCcceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480 84 MNFDGFTHL-NIDAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 160 (312)
Q Consensus 84 ~~~~~~~~~-~i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 160 (312)
.+|...... --..++|+.|.+.++ +..+ .+..+++|+.++++.+... ..+ .+..+++|+.|+++
T Consensus 137 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~---------~~~----~l~~l~~L~~L~L~ 203 (308)
T 1h6u_A 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS---------DIS----PLASLPNLIEVHLK 203 (308)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC---------CCG----GGGGCTTCCEEECT
T ss_pred CCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccC---------cCh----hhcCCCCCCEEEcc
Confidence 988532110 113478999999874 2222 2668899999998754321 111 16688999999999
Q ss_pred eeehhhhcccCCCCCCCcccCCcceEEEEEE
Q 021480 161 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRIN 191 (312)
Q Consensus 161 ~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~ 191 (312)
.+.+..+. .+ ..+++|+.|.+..+
T Consensus 204 ~N~l~~~~------~l-~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 204 NNQISDVS------PL-ANTSNLFIVTLTNQ 227 (308)
T ss_dssp TSCCCBCG------GG-TTCTTCCEEEEEEE
T ss_pred CCccCccc------cc-cCCCCCCEEEccCC
Confidence 88664221 12 24789999999654
No 69
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.78 E-value=5.1e-09 Score=82.00 Aligned_cols=134 Identities=20% Similarity=0.143 Sum_probs=72.3
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 83 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 83 (312)
+++++|+++.+......+|..+..+++|+.|++++|.+.....+..+++|+.|++++|.+++. ++..+..+|.|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence 345555554332111255665566666677777666655544556666677777766666442 3444555666666666
Q ss_pred eccCCceeEEEeCCCcceEEEeecccc-eeeecCCcceEEEEeEEEeecCCccCCCCcchh-HHHHhhcCCCccEEEEee
Q 021480 84 MNFDGFTHLNIDAPNLQFFDIGGVFDD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCK-LLRFFVHLPHIRRLEIQS 161 (312)
Q Consensus 84 ~~~~~~~~~~i~~p~L~~L~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~l~~L~l~~ 161 (312)
.+|.... +.. -.+..+++|+.++++.+... ..+. ....+..+++|+.|++..
T Consensus 103 s~N~l~~-----------------~~~~~~l~~l~~L~~L~l~~N~l~---------~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 103 SGNKLKD-----------------ISTLEPLKKLECLKSLDLFNCEVT---------NLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp BSSSCCS-----------------SGGGGGGSSCSCCCEEECCSSGGG---------TSTTHHHHHHTTCSSCCEETTEE
T ss_pred cCCccCc-----------------chhHHHHhcCCCCCEEEeeCCcCc---------chHHHHHHHHHhCccCcEecCCC
Confidence 6553211 111 12345677777777643211 0111 113466777788777766
Q ss_pred eeh
Q 021480 162 YFL 164 (312)
Q Consensus 162 ~~~ 164 (312)
+..
T Consensus 157 n~~ 159 (168)
T 2ell_A 157 RED 159 (168)
T ss_dssp TTS
T ss_pred CCh
Confidence 543
No 70
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.77 E-value=3.4e-09 Score=100.05 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=7.2
Q ss_pred ccceeEEecCC
Q 021480 271 VLETMTIKPAS 281 (312)
Q Consensus 271 ~Le~~~i~~~~ 281 (312)
.|+.+.+..++
T Consensus 546 ~L~~l~l~~N~ 556 (606)
T 3vq2_A 546 SLAFFNLTNNS 556 (606)
T ss_dssp TCCEEECCSCC
T ss_pred cCcEEEccCCC
Confidence 47777776655
No 71
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.77 E-value=1.7e-10 Score=102.18 Aligned_cols=208 Identities=14% Similarity=0.086 Sum_probs=131.6
Q ss_pred CCceEEEEEecCCcceecC-----CCcccCC-cceEEEeeceeeCC--CCCCCC-----CcccceeeecceeeCh---HH
Q 021480 4 SCVKEFILEIWKGQRYKVP-----SSLFLCQ-NLIHLELFNCLLKP--PSTFKG-----FRNLKSLDLQHITLSQ---DV 67 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp-----~~l~~~~-~L~~L~L~~~~l~~--~~~~~~-----l~~L~~L~L~~~~~~~---~~ 67 (312)
+++++|+++.+.. ...+ ..+..++ +|+.|+|++|.+.. +..+.. +++|++|+|++|.+++ ..
T Consensus 22 ~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 22 HGVTSLDLSLNNL--YSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp TTCCEEECTTSCG--GGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCceEEEccCCCC--ChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 3578888754432 2233 3445567 89999999998865 222333 3899999999999864 34
Q ss_pred HHHHHhCC-cccceeeeeccCCceeEE------Ee--CCCcceEEEeec-ccc-----e--eeecCC-cceEEEEeEEEe
Q 021480 68 FENLISSS-PTLERLTLMNFDGFTHLN------ID--APNLQFFDIGGV-FDD-----V--TFENTF-HLALVSIGLYVN 129 (312)
Q Consensus 68 l~~ll~~c-p~Le~L~l~~~~~~~~~~------i~--~p~L~~L~~~~~-~~~-----~--~~~~~~-~L~~l~l~~~~~ 129 (312)
+...+..+ +.|++|++++|....... +. ..+|+.|.++++ +.. + .+...+ +|+.++++.+..
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 56667777 899999999886322100 11 258999999874 221 1 123444 899999875432
Q ss_pred ecCCccCCCCcchhHHHHhhcC-CCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcC
Q 021480 130 VKNDQAMGPGNSCKLLRFFVHL-PHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSS 208 (312)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~l-~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~ 208 (312)
.. .....+...+... ++|+.|+++.+.+........+..+....++|++|.++.+.-...+...+...++.+
T Consensus 180 ~~-------~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l 252 (362)
T 3goz_A 180 AS-------KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252 (362)
T ss_dssp GG-------SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred ch-------hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence 11 1223445566677 499999999887642111011111111124899999965533333444677788999
Q ss_pred CCcceEEEEecc
Q 021480 209 PNLQELEMLARP 220 (312)
Q Consensus 209 p~Le~L~l~~~~ 220 (312)
++|+.|.+..+.
T Consensus 253 ~~L~~L~L~~n~ 264 (362)
T 3goz_A 253 KHLQTVYLDYDI 264 (362)
T ss_dssp TTCSEEEEEHHH
T ss_pred CCccEEEeccCC
Confidence 999999998875
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.77 E-value=3.2e-09 Score=100.21 Aligned_cols=187 Identities=20% Similarity=0.115 Sum_probs=109.3
Q ss_pred CCceEEEEEecCCcceecCCCc-ccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKVPSSL-FLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l-~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
.+++.|+++.+. ...+|..+ ..+++|+.|+|++|.+.. +..+..+++|++|++++|.+++.. +..+|.|+.
T Consensus 123 ~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~ 196 (597)
T 3oja_B 123 PLLTVLVLERND--LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH 196 (597)
T ss_dssp TTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSE
T ss_pred CCCCEEEeeCCC--CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhh
Confidence 456777775443 34788875 578999999999998764 446889999999999999887532 466788888
Q ss_pred eeeeccCCceeEEEeCCC---------------------cceEEEeec-ccc-eeeecCCcceEEEEeEEEeecCCccCC
Q 021480 81 LTLMNFDGFTHLNIDAPN---------------------LQFFDIGGV-FDD-VTFENTFHLALVSIGLYVNVKNDQAMG 137 (312)
Q Consensus 81 L~l~~~~~~~~~~i~~p~---------------------L~~L~~~~~-~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~ 137 (312)
|++.++.... +. ..++ |+.|.+.++ +.. ..+..+++|+.++++.+....
T Consensus 197 L~l~~n~l~~-l~-~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~------ 268 (597)
T 3oja_B 197 ANVSYNLLST-LA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK------ 268 (597)
T ss_dssp EECCSSCCSE-EE-CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCE------
T ss_pred hhcccCcccc-cc-CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCC------
Confidence 8887764321 11 1234 444444442 111 123455666666665332110
Q ss_pred CCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEE
Q 021480 138 PGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEML 217 (312)
Q Consensus 138 ~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~ 217 (312)
.. ...++.+++|+.|+++++.+..+ +... ..+++|+.|.++.+.-. .++..+..+|+|+.|++.
T Consensus 269 --~~---~~~~~~l~~L~~L~Ls~N~l~~l-----~~~~-~~l~~L~~L~Ls~N~l~-----~i~~~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 269 --IM---YHPFVKMQRLERLYISNNRLVAL-----NLYG-QPIPTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLD 332 (597)
T ss_dssp --EE---SGGGTTCSSCCEEECTTSCCCEE-----ECSS-SCCTTCCEEECCSSCCC-----CCGGGHHHHTTCSEEECC
T ss_pred --CC---HHHhcCccCCCEEECCCCCCCCC-----Cccc-ccCCCCcEEECCCCCCC-----ccCcccccCCCCCEEECC
Confidence 00 12245567777777766654322 1111 23667777777433211 133334556777777776
Q ss_pred ecc
Q 021480 218 ARP 220 (312)
Q Consensus 218 ~~~ 220 (312)
.+.
T Consensus 333 ~N~ 335 (597)
T 3oja_B 333 HNS 335 (597)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.76 E-value=5.8e-10 Score=102.65 Aligned_cols=168 Identities=15% Similarity=0.094 Sum_probs=116.6
Q ss_pred CCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEEe
Q 021480 28 CQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIG 105 (312)
Q Consensus 28 ~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~ 105 (312)
+++|+.|+|++|.+.. +..+..+++|++|+|++|.+++.. + +..++.|++|++++|.. ..+. ..|+|+.|.+.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~l-~~l~-~~~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNYV-QELL-VGPSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSEE-EEEE-ECTTCCEEECC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCcC-CCCC-CCCCcCEEECc
Confidence 4589999999998875 346889999999999999886431 1 78999999999998853 2333 34899999999
Q ss_pred ec-ccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcc
Q 021480 106 GV-FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLN 184 (312)
Q Consensus 106 ~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~ 184 (312)
++ +..+....+++|+.++++.+.... .. ...++.+++|+.|+++.+.+.. ..+..+...+++|+
T Consensus 108 ~N~l~~~~~~~l~~L~~L~L~~N~l~~--------~~---~~~~~~l~~L~~L~Ls~N~l~~----~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 108 NNNISRVSCSRGQGKKNIYLANNKITM--------LR---DLDEGCRSRVQYLDLKLNEIDT----VNFAELAASSDTLE 172 (487)
T ss_dssp SSCCCCEEECCCSSCEEEECCSSCCCS--------GG---GBCGGGGSSEEEEECTTSCCCE----EEGGGGGGGTTTCC
T ss_pred CCcCCCCCccccCCCCEEECCCCCCCC--------CC---chhhcCCCCCCEEECCCCCCCC----cChHHHhhhCCccc
Confidence 84 444445567899999987543211 00 1225678999999999886532 22222332468899
Q ss_pred eEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480 185 YLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 185 ~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
.|.++.+.-. + ++. ...+|+|+.|++..+..
T Consensus 173 ~L~Ls~N~l~--~---~~~-~~~l~~L~~L~Ls~N~l 203 (487)
T 3oja_A 173 HLNLQYNFIY--D---VKG-QVVFAKLKTLDLSSNKL 203 (487)
T ss_dssp EEECTTSCCC--E---EEC-CCCCTTCCEEECCSSCC
T ss_pred EEecCCCccc--c---ccc-cccCCCCCEEECCCCCC
Confidence 9988433211 1 122 23589999999987754
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.75 E-value=5.4e-10 Score=96.78 Aligned_cols=226 Identities=16% Similarity=0.139 Sum_probs=129.3
Q ss_pred ecCCCcccCCcceEEEeeceeeCC---CCCCC-------CCcccceeeecceeeChHHHHHH-HhCCcccceeeeeccCC
Q 021480 20 KVPSSLFLCQNLIHLELFNCLLKP---PSTFK-------GFRNLKSLDLQHITLSQDVFENL-ISSSPTLERLTLMNFDG 88 (312)
Q Consensus 20 ~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~-------~l~~L~~L~L~~~~~~~~~l~~l-l~~cp~Le~L~l~~~~~ 88 (312)
.+|..+... |+.|+|+++.+.. +..+. ++++|++|+|+++.+++.....+ +..++.|++|+++++..
T Consensus 56 ~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 56 ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW 133 (312)
T ss_dssp CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC
T ss_pred ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC
Confidence 556655544 8888888887632 22222 58899999999998865322222 37889999999988753
Q ss_pred cee---E-EE---eCCCcceEEEeec-ccc---eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHH-hhcCCCccE
Q 021480 89 FTH---L-NI---DAPNLQFFDIGGV-FDD---VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRF-FVHLPHIRR 156 (312)
Q Consensus 89 ~~~---~-~i---~~p~L~~L~~~~~-~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~l~~ 156 (312)
... + .+ ..++|+.|.+.++ +.. -.+..+++|+.++++.+.... .......+ +..+++|+.
T Consensus 134 ~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~~~~~l~~L~~ 205 (312)
T 1wwl_A 134 ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG--------ERGLISALCPLKFPTLQV 205 (312)
T ss_dssp SSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH--------HHHHHHHSCTTSCTTCCE
T ss_pred cchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc--------chHHHHHHHhccCCCCCE
Confidence 221 0 00 1278999998874 222 235678899999887542110 00011111 267889999
Q ss_pred EEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHH-HHhhhcCCCcceEEEEeccCCCCCcccccccccc
Q 021480 157 LEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAA-LCLLRSSPNLQELEMLARPEETGIGVLTNFWEVD 235 (312)
Q Consensus 157 L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l-~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~ 235 (312)
|++..+.+..+.. .+..+...+++|++|.++.+.-... . ...+..+++|+.|++..+... .
T Consensus 206 L~L~~N~l~~~~~--~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~~l~~L~~L~Ls~N~l~------------~ 267 (312)
T 1wwl_A 206 LALRNAGMETPSG--VCSALAAARVQLQGLDLSHNSLRDA----AGAPSCDWPSQLNSLNLSFTGLK------------Q 267 (312)
T ss_dssp EECTTSCCCCHHH--HHHHHHHTTCCCSEEECTTSCCCSS----CCCSCCCCCTTCCEEECTTSCCS------------S
T ss_pred EECCCCcCcchHH--HHHHHHhcCCCCCEEECCCCcCCcc----cchhhhhhcCCCCEEECCCCccC------------h
Confidence 9998776532111 1101111346888888843321110 1 123345689999988766432 1
Q ss_pred cccccccCceEEEEEe--EecchhHHHHHHHHHccCcccceeEEecCC
Q 021480 236 HWTSLFSQLRMVKIVG--ISGIRSELEFIKFVLSNSPVLETMTIKPAS 281 (312)
Q Consensus 236 ~~~~~~~~L~~v~i~~--~~~~~~~~~~~~~ll~~~~~Le~~~i~~~~ 281 (312)
.|.....+|+.+.+.+ +.+.+. +.+.+.|+.+.+..+.
T Consensus 268 ip~~~~~~L~~L~Ls~N~l~~~p~--------~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 268 VPKGLPAKLSVLDLSYNRLDRNPS--------PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSSCCSEEEEEECCSSCCCSCCC--------TTTSCEEEEEECTTCT
T ss_pred hhhhccCCceEEECCCCCCCCChh--------HhhCCCCCEEeccCCC
Confidence 1122226777777764 222211 4567888888887664
No 75
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.74 E-value=2.5e-09 Score=91.70 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=87.9
Q ss_pred CCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce--eEEEeCCCcceEEEe
Q 021480 28 CQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT--HLNIDAPNLQFFDIG 105 (312)
Q Consensus 28 ~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~--~~~i~~p~L~~L~~~ 105 (312)
+++|+.|++++|.+...+.+..+++|+.|+++++.+++- .. +..++.|+.|++.+|.... . --..++|+.|.+.
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 455666666666555444455566666666666655432 11 5566666666666553211 0 0022455555555
Q ss_pred ec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCc
Q 021480 106 GV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL 183 (312)
Q Consensus 106 ~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L 183 (312)
++ +..+ .+..+++|+.++++.+... . + ..+..+++|+.|+++.+.+..+ .+ + ..+++|
T Consensus 121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~---------~---~-~~l~~l~~L~~L~L~~N~l~~~----~~--l-~~l~~L 180 (291)
T 1h6t_A 121 HNGISDINGLVHLPQLESLYLGNNKIT---------D---I-TVLSRLTKLDTLSLEDNQISDI----VP--L-AGLTKL 180 (291)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCC---------C---C-GGGGGCTTCSEEECCSSCCCCC----GG--G-TTCTTC
T ss_pred CCcCCCChhhcCCCCCCEEEccCCcCC---------c---c-hhhccCCCCCEEEccCCccccc----hh--h-cCCCcc
Confidence 42 2111 2456777888877643211 0 1 2356678888888877655321 11 2 236677
Q ss_pred ceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480 184 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 184 ~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
++|.++.+.- .+ +.. +..+++|+.|++..+.
T Consensus 181 ~~L~L~~N~i--~~---l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 181 QNLYLSKNHI--SD---LRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CEEECCSSCC--CB---CGG-GTTCTTCSEEEEEEEE
T ss_pred CEEECCCCcC--CC---Chh-hccCCCCCEEECcCCc
Confidence 8777743321 11 222 5778888888887764
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.74 E-value=1.4e-09 Score=93.22 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=70.5
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT 82 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 82 (312)
+++++++ .......+|..+. ++++.|+|++|.+.. +..+..+++|+.|+|+++.+++-. . ...++.|+.|+
T Consensus 11 ~l~~l~~--~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~ 83 (290)
T 1p9a_G 11 SHLEVNC--DKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--V-DGTLPVLGTLD 83 (290)
T ss_dssp TCCEEEC--TTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--C-CSCCTTCCEEE
T ss_pred CccEEEC--CCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc--C-CCCCCcCCEEE
Confidence 3455554 3333457777664 689999999998764 456788999999999999876421 1 16889999999
Q ss_pred eeccCCceeEE---EeCCCcceEEEeec-ccc---eeeecCCcceEEEEe
Q 021480 83 LMNFDGFTHLN---IDAPNLQFFDIGGV-FDD---VTFENTFHLALVSIG 125 (312)
Q Consensus 83 l~~~~~~~~~~---i~~p~L~~L~~~~~-~~~---~~~~~~~~L~~l~l~ 125 (312)
++++.... +. -..++|+.|.++++ +.. -.+..+++|+.++++
T Consensus 84 Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~ 132 (290)
T 1p9a_G 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132 (290)
T ss_dssp CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred CCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC
Confidence 98874321 11 12245555555542 111 123445555555554
No 77
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.72 E-value=1.1e-08 Score=93.38 Aligned_cols=74 Identities=18% Similarity=0.112 Sum_probs=40.9
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 83 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 83 (312)
++++.|+++.+... .+| +..+++|+.|++++|.+...+ ++.+++|++|+++++.+++- + +..++.|++|++
T Consensus 64 ~~L~~L~Ls~n~l~--~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNIT--TLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCS--CCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCC--eEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEEC
Confidence 34556665433321 233 455666666666666665532 55666666666666665442 1 455566666666
Q ss_pred ecc
Q 021480 84 MNF 86 (312)
Q Consensus 84 ~~~ 86 (312)
.+|
T Consensus 135 ~~N 137 (457)
T 3bz5_A 135 ARN 137 (457)
T ss_dssp TTS
T ss_pred CCC
Confidence 554
No 78
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.71 E-value=2.9e-09 Score=92.93 Aligned_cols=106 Identities=20% Similarity=0.211 Sum_probs=76.4
Q ss_pred eecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE-e
Q 021480 19 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-D 95 (312)
Q Consensus 19 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i-~ 95 (312)
..+|..+. ++|+.|++++|.+.. +..+..+++|++|+++++.+++. .+..+..++.|++|++.++.... +.. .
T Consensus 46 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~-l~~~~ 121 (332)
T 2ft3_A 46 KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNHLVE-IPPNL 121 (332)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSCCCS-CCSSC
T ss_pred cccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCcCCc-cCccc
Confidence 46776653 689999999997754 44688999999999999987642 23456889999999999875321 110 1
Q ss_pred CCCcceEEEeec-ccce---eeecCCcceEEEEeEEE
Q 021480 96 APNLQFFDIGGV-FDDV---TFENTFHLALVSIGLYV 128 (312)
Q Consensus 96 ~p~L~~L~~~~~-~~~~---~~~~~~~L~~l~l~~~~ 128 (312)
.++|+.|.+.++ +..+ .+..+++|+.++++.+.
T Consensus 122 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 122 PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence 178999999874 2222 35678999999987554
No 79
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.71 E-value=2.7e-09 Score=100.74 Aligned_cols=183 Identities=17% Similarity=0.142 Sum_probs=87.6
Q ss_pred cccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE-eCCCcceEE
Q 021480 25 LFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI-DAPNLQFFD 103 (312)
Q Consensus 25 l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i-~~p~L~~L~ 103 (312)
+..+++|+.|+++++.+...+.+..+++|++|++.+|.+. .++.+ .+|.|++|++.+|.....+.+ ..|+|+.|.
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 5556777777777776655446666777777777777662 23332 667777777766643322211 335566665
Q ss_pred Eeec-cc-----ceeeecCCcceEEEEeEEEeecCCccCC---------CC-----cchhHHHHhhcCCCccEEEEeeee
Q 021480 104 IGGV-FD-----DVTFENTFHLALVSIGLYVNVKNDQAMG---------PG-----NSCKLLRFFVHLPHIRRLEIQSYF 163 (312)
Q Consensus 104 ~~~~-~~-----~~~~~~~~~L~~l~l~~~~~~~~~~~~~---------~~-----~~~~~~~~l~~l~~l~~L~l~~~~ 163 (312)
+.++ +. ...+..+++|+.++++.+........+. .. .... ...+..+++++.|+++.+.
T Consensus 357 ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 357 LSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTE-FSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTT-TTTTTTCTTCCEEECTTSC
T ss_pred CcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccC-hhhhhccccCCEEECcCCC
Confidence 5542 11 1122345555555554322110000000 00 0000 0124455666666666554
Q ss_pred hhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480 164 LKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 164 ~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
+. +..+..+. .+++|++|.+..+.-... .++..+..+++|+.|++..+.
T Consensus 436 l~----~~~~~~~~-~l~~L~~L~l~~n~l~~~---~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 436 TK----IDFDGIFL-GLTSLNTLKMAGNSFKDN---TLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp CE----ECCTTTTT-TCTTCCEEECTTCEEGGG---EECSCCTTCTTCCEEECTTSC
T ss_pred CC----ccchhhhc-CCCCCCEEECCCCcCCCc---chHHhhccCCCCCEEECCCCc
Confidence 32 12222222 356677666632211100 134455677777777776553
No 80
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.70 E-value=1.9e-08 Score=80.99 Aligned_cols=143 Identities=15% Similarity=0.126 Sum_probs=100.6
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM 84 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 84 (312)
++++|+++.... ..+| .+..+++|+.|++++|.+..++.+..+++|++|+++++.+++... ..++.+|.|+.|++.
T Consensus 45 ~L~~L~l~~n~i--~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINV--TDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI-PNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCC--SCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGS-CCCTTCTTCCEEECC
T ss_pred CccEEeccCCCc--cChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccC-hhhcCCCCCCEEEec
Confidence 567777754432 3666 577889999999999977776678889999999999988875322 336788999999998
Q ss_pred ccCCcee---EEEeCCCcceEEEeec--ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEE
Q 021480 85 NFDGFTH---LNIDAPNLQFFDIGGV--FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLE 158 (312)
Q Consensus 85 ~~~~~~~---~~i~~p~L~~L~~~~~--~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~ 158 (312)
+|..... .--..++|+.|.++++ ...+ .+..+++|+.++++.+... .. ..+..+++|+.|+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~---------~~----~~l~~l~~L~~L~ 187 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH---------DY----RGIEDFPKLNQLY 187 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCC---------CC----TTGGGCSSCCEEE
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCc---------Ch----HHhccCCCCCEEE
Confidence 8753220 0013478899988874 3222 3567899999999754321 11 1366789999999
Q ss_pred Eeeeeh
Q 021480 159 IQSYFL 164 (312)
Q Consensus 159 l~~~~~ 164 (312)
+.++.+
T Consensus 188 l~~N~i 193 (197)
T 4ezg_A 188 AFSQTI 193 (197)
T ss_dssp ECBC--
T ss_pred eeCccc
Confidence 998865
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.68 E-value=1.3e-08 Score=96.00 Aligned_cols=108 Identities=15% Similarity=0.094 Sum_probs=67.8
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 83 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 83 (312)
.+++.|+++.+.. ..+|. .+++|++|+|++|.+...+. .+++|+.|++++|.+++ ++. ..+.|+.|++
T Consensus 61 ~~L~~L~L~~N~l--~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNL--TSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH--LPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCC--SCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC--CCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCC--CCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC--CCC---CCCCcCEEEC
Confidence 4677777754433 36676 46889999999998776433 77889999998887754 111 5677888888
Q ss_pred eccCCceeEEEeCCCcceEEEeec-ccceeeecCCcceEEEEe
Q 021480 84 MNFDGFTHLNIDAPNLQFFDIGGV-FDDVTFENTFHLALVSIG 125 (312)
Q Consensus 84 ~~~~~~~~~~i~~p~L~~L~~~~~-~~~~~~~~~~~L~~l~l~ 125 (312)
.+|... .+....++|+.|.++++ +..+. ...++|+.++++
T Consensus 129 ~~N~l~-~lp~~l~~L~~L~Ls~N~l~~l~-~~~~~L~~L~L~ 169 (622)
T 3g06_A 129 FGNQLT-SLPVLPPGLQELSVSDNQLASLP-ALPSELCKLWAY 169 (622)
T ss_dssp CSSCCS-CCCCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECC
T ss_pred CCCCCC-cCCCCCCCCCEEECcCCcCCCcC-CccCCCCEEECC
Confidence 776422 23233477777777763 22211 123455555554
No 82
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.68 E-value=3e-08 Score=92.79 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=36.0
Q ss_pred hcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEecc
Q 021480 149 VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 149 ~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~ 220 (312)
..++++++|++..+.+. +..+..+. .+++|+.|.+..+. ..++..++..+..+++|+.|++..+.
T Consensus 350 ~~l~~L~~L~l~~n~l~----~~~~~~~~-~l~~L~~L~L~~N~--l~~~~~~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFT----DSVFQGCS-TLKRLQTLILQRNG--LKNFFKVALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp SSCCCCCEEECCSSCCC----TTTTTTCC-SCSSCCEEECCSSC--CCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred cCCCCceEEECCCCccc----cchhhhhc-ccCCCCEEECCCCC--cCCcccchhhhcCCCCCCEEECCCCc
Confidence 34556666666655432 22222222 36677777774332 22222355667788888888887654
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.68 E-value=4.4e-09 Score=87.30 Aligned_cols=178 Identities=13% Similarity=0.126 Sum_probs=107.2
Q ss_pred eecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeeccee-eChHHHHHHHhCCcccceeeeeccCCceeEE--
Q 021480 19 YKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISSSPTLERLTLMNFDGFTHLN-- 93 (312)
Q Consensus 19 ~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~-- 93 (312)
..+|. + .++|+.|+++++.+.. +..+.++++|++|+++++. ++.- ....+..++.|++|++.+|..+..+.
T Consensus 24 ~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 24 QRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred cccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 35666 3 3489999999998765 3357889999999999986 6431 11246789999999999854443332
Q ss_pred --EeCCCcceEEEeec-cccee-eecCCcce---EEEEeEEEeecCCccCCCCcchhHHHHhhcCCCcc-EEEEeeeehh
Q 021480 94 --IDAPNLQFFDIGGV-FDDVT-FENTFHLA---LVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIR-RLEIQSYFLK 165 (312)
Q Consensus 94 --i~~p~L~~L~~~~~-~~~~~-~~~~~~L~---~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~l~~~~~~ 165 (312)
-..++|+.|.+.++ +..+. +..+++|+ .++++.+..... .+ ...+.++++++ .|+++.+.+.
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~--------i~--~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS--------IP--VNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCE--------EC--TTTTTTTBSSEEEEECCSCCCC
T ss_pred HhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhh--------cC--cccccchhcceeEEEcCCCCCc
Confidence 14578888888873 22221 44566666 777764411100 00 12255678888 8888777554
Q ss_pred hhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHH-HHhhhcC-CCcceEEEEecc
Q 021480 166 YLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAA-LCLLRSS-PNLQELEMLARP 220 (312)
Q Consensus 166 ~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l-~~~L~~~-p~Le~L~l~~~~ 220 (312)
.++. .... ..+|++|.+..+- ... .+ ...+..+ ++|+.|++..+.
T Consensus 170 ~i~~-----~~~~-~~~L~~L~L~~n~-~l~---~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 170 SVQG-----YAFN-GTKLDAVYLNKNK-YLT---VIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp EECT-----TTTT-TCEEEEEECTTCT-TCC---EECTTTTTTCSBCCSEEECTTCC
T ss_pred ccCH-----hhcC-CCCCCEEEcCCCC-Ccc---cCCHHHhhccccCCcEEECCCCc
Confidence 2211 1111 2467777664331 011 12 2345677 888888886543
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.67 E-value=4.9e-08 Score=91.33 Aligned_cols=135 Identities=15% Similarity=0.111 Sum_probs=92.4
Q ss_pred EecCCcceecCCCcccCCcceEEEeeceeeCCC--CCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc
Q 021480 12 EIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF 89 (312)
Q Consensus 12 ~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~ 89 (312)
+++......+|..+. ++|++|++++|.+... ..+.++++|++|+|++|.+++- .+..+.+++.|++|+++++.-.
T Consensus 37 ~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 37 DYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp ECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC
T ss_pred EcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC
Confidence 344444456887664 7899999999988762 4688999999999999987642 2345688999999999988532
Q ss_pred eeEEE-eCCCcceEEEeec-ccc----eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCc--cEEEEee
Q 021480 90 THLNI-DAPNLQFFDIGGV-FDD----VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHI--RRLEIQS 161 (312)
Q Consensus 90 ~~~~i-~~p~L~~L~~~~~-~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l--~~L~l~~ 161 (312)
.+.. ..++|++|.++++ +.. -.+.++++|+.++++.+.... . -+..++++ +.|++..
T Consensus 114 -~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----------~----~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 114 -NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----------L----DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp -EECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----------T----TTGGGTTSCEEEEEEEE
T ss_pred -ccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc----------C----chhhhhhceeeEEEeec
Confidence 1110 5678999999884 222 246688999999987543211 0 12334444 8888877
Q ss_pred eeh
Q 021480 162 YFL 164 (312)
Q Consensus 162 ~~~ 164 (312)
+.+
T Consensus 179 n~l 181 (562)
T 3a79_B 179 VSY 181 (562)
T ss_dssp SSC
T ss_pred ccc
Confidence 644
No 85
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.67 E-value=7.7e-09 Score=87.28 Aligned_cols=145 Identities=16% Similarity=0.123 Sum_probs=95.7
Q ss_pred CcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEE
Q 021480 24 SLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFD 103 (312)
Q Consensus 24 ~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~ 103 (312)
.+..+++|+.|++++|.+...+.+..+++|+.|+++++.+++- .. +..++.|+.|++++|....--.+..++|+.|.
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~ 112 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLF 112 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEE
T ss_pred chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCccCCcCccccCcccEEE
Confidence 4567789999999999887766788999999999999988653 22 78999999999998853210001116788887
Q ss_pred Eeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccC
Q 021480 104 IGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCV 181 (312)
Q Consensus 104 ~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~ 181 (312)
+.++ +..+ .+..+++|+.++++.+... .. ..+..+++|+.|+++.+.+..+ ..+. .++
T Consensus 113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~---------~~----~~l~~l~~L~~L~L~~N~i~~~------~~l~-~l~ 172 (263)
T 1xeu_A 113 LDNNELRDTDSLIHLKNLEILSIRNNKLK---------SI----VMLGFLSKLEVLDLHGNEITNT------GGLT-RLK 172 (263)
T ss_dssp CCSSCCSBSGGGTTCTTCCEEECTTSCCC---------BC----GGGGGCTTCCEEECTTSCCCBC------TTST-TCC
T ss_pred ccCCccCCChhhcCcccccEEECCCCcCC---------CC----hHHccCCCCCEEECCCCcCcch------HHhc-cCC
Confidence 7763 2222 2456777888777543211 11 1355677788888877655321 1122 366
Q ss_pred CcceEEEEEE
Q 021480 182 DLNYLSIRIN 191 (312)
Q Consensus 182 ~L~~L~l~~~ 191 (312)
+|+.|.+..+
T Consensus 173 ~L~~L~l~~N 182 (263)
T 1xeu_A 173 KVNWIDLTGQ 182 (263)
T ss_dssp CCCEEEEEEE
T ss_pred CCCEEeCCCC
Confidence 7777777543
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.64 E-value=4.1e-09 Score=99.28 Aligned_cols=162 Identities=17% Similarity=0.172 Sum_probs=76.0
Q ss_pred CCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEE--EeCCCcceEEEe
Q 021480 28 CQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--IDAPNLQFFDIG 105 (312)
Q Consensus 28 ~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~--i~~p~L~~L~~~ 105 (312)
+++|+.|++++|.+...+.+..+++|+.|+|++|.+.+-. . +..++.|+.|+|.+|.... +. -..++|+.|.+.
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSLE 117 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEECT
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEec
Confidence 3455555555555544444555555555555555543311 1 4555555555555543111 00 012445555554
Q ss_pred ec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCc
Q 021480 106 GV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL 183 (312)
Q Consensus 106 ~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L 183 (312)
++ +..+ .+..+++|+.++++.+... . + ..+..+++|+.|+++.+.+..+ .+ + ..+++|
T Consensus 118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~---------~---l-~~l~~l~~L~~L~Ls~N~l~~~----~~--l-~~l~~L 177 (605)
T 1m9s_A 118 HNGISDINGLVHLPQLESLYLGNNKIT---------D---I-TVLSRLTKLDTLSLEDNQISDI----VP--L-AGLTKL 177 (605)
T ss_dssp TSCCCCCGGGGGCTTCSEEECCSSCCC---------C---C-GGGGSCTTCSEEECCSSCCCCC----GG--G-TTCTTC
T ss_pred CCCCCCCccccCCCccCEEECCCCccC---------C---c-hhhcccCCCCEEECcCCcCCCc----hh--h-ccCCCC
Confidence 42 1111 1445666666666543211 0 0 2345666677777766544211 11 1 135566
Q ss_pred ceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021480 184 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLAR 219 (312)
Q Consensus 184 ~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~ 219 (312)
++|.++.+.- .+ ++ -+..+++|+.|.+..+
T Consensus 178 ~~L~Ls~N~i--~~---l~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 178 QNLYLSKNHI--SD---LR-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CEEECCSSCC--CB---CG-GGTTCTTCSEEECCSE
T ss_pred CEEECcCCCC--CC---Ch-HHccCCCCCEEEccCC
Confidence 6666643311 11 12 2456677777766644
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.63 E-value=2.3e-08 Score=83.58 Aligned_cols=151 Identities=14% Similarity=0.076 Sum_probs=98.4
Q ss_pred CceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480 5 CVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 81 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 81 (312)
+++.|+++.... ..++. .+..+++|+.|+|++|.+.. +..+..+++|++|+|+++.++.- ....+..++.|++|
T Consensus 36 ~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 112 (251)
T 3m19_A 36 DTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKL 112 (251)
T ss_dssp TCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCEE
Confidence 566676643332 24444 56788999999999998865 34478999999999999988642 22456788999999
Q ss_pred eeeccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEee
Q 021480 82 TLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS 161 (312)
Q Consensus 82 ~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 161 (312)
++.++.... +....+..+++|+.++++.+....- + ...+..+++|+.|++..
T Consensus 113 ~L~~N~l~~-----------------~~~~~~~~l~~L~~L~Ls~N~l~~~---------~--~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 113 YLGGNQLKS-----------------LPSGVFDRLTKLKELRLNTNQLQSI---------P--AGAFDKLTNLQTLSLST 164 (251)
T ss_dssp ECCSSCCCC-----------------CCTTTTTTCTTCCEEECCSSCCCCC---------C--TTTTTTCTTCCEEECCS
T ss_pred EcCCCcCCC-----------------cChhHhccCCcccEEECcCCcCCcc---------C--HHHcCcCcCCCEEECCC
Confidence 998874321 1111234678888888865432110 0 12355788999999988
Q ss_pred eehhhhcccCCCCCCCcccCCcceEEEEEE
Q 021480 162 YFLKYLAIGNVPSRLPRPCVDLNYLSIRIN 191 (312)
Q Consensus 162 ~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~ 191 (312)
+.+..+ .+..+ ..+++|++|.+..+
T Consensus 165 N~l~~~----~~~~~-~~l~~L~~L~l~~N 189 (251)
T 3m19_A 165 NQLQSV----PHGAF-DRLGKLQTITLFGN 189 (251)
T ss_dssp SCCSCC----CTTTT-TTCTTCCEEECCSC
T ss_pred CcCCcc----CHHHH-hCCCCCCEEEeeCC
Confidence 765322 11122 24678888888543
No 88
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.63 E-value=5.1e-09 Score=80.26 Aligned_cols=132 Identities=20% Similarity=0.137 Sum_probs=87.0
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 83 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 83 (312)
.++++|+++.+......+|..+..+++|+.|++++|.+.....+..+++|+.|++++|.+++. ++..+..++.|+.|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence 456777765433211267777788899999999999877666678889999999999988653 5666777899999999
Q ss_pred eccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480 84 MNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 160 (312)
Q Consensus 84 ~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 160 (312)
++|.... + .....+..+++|+.++++.+..... .......+..+++++.|++.
T Consensus 96 s~N~i~~-~---------------~~~~~~~~l~~L~~L~l~~N~l~~~--------~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKD-L---------------STIEPLKKLENLKSLDLFNCEVTNL--------NDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCS-H---------------HHHGGGGGCTTCCEEECTTCGGGGS--------TTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCC-h---------------HHHHHHhhCCCCCEEeCcCCcccch--------HHHHHHHHHHCCCcccccCC
Confidence 8775321 0 0001245678888888865432110 01012356778888888653
No 89
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.62 E-value=2.5e-09 Score=102.35 Aligned_cols=67 Identities=15% Similarity=0.099 Sum_probs=32.8
Q ss_pred hhcCCCccEEEEeeeehhhhcccCCCCCC---CcccCCcceEEEEEEcCChhhHHHHH-HhhhcCCCcceEEEEec
Q 021480 148 FVHLPHIRRLEIQSYFLKYLAIGNVPSRL---PRPCVDLNYLSIRINFNDLEENLAAL-CLLRSSPNLQELEMLAR 219 (312)
Q Consensus 148 l~~l~~l~~L~l~~~~~~~l~~~~~~~~l---~~~f~~L~~L~l~~~~~~~~~~~~l~-~~L~~~p~Le~L~l~~~ 219 (312)
+.++++|+.|+++.+.+..+.....|... -..+++|+.|.++.+.- . .++ ..+..+++|+.|++..+
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l--~---~i~~~~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF--D---EIPVEVFKDLFELKIIDLGLN 570 (680)
T ss_dssp TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC--C---CCCTTTTTTCTTCCEEECCSS
T ss_pred hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC--C---CCCHHHcccccCcceeECCCC
Confidence 44566777777766655433222222110 12345666666632211 1 122 23566777777777554
No 90
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.61 E-value=1.2e-08 Score=86.41 Aligned_cols=176 Identities=16% Similarity=0.104 Sum_probs=114.6
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM 84 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 84 (312)
++++|.+.... ...+ ..+..+++|+.|++++|.+...+.+..+++|++|+++++.+++- ....+..++.|++|++.
T Consensus 42 ~L~~L~l~~~~--i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 42 SIDQIIANNSD--IKSV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLV 117 (272)
T ss_dssp TCCEEECTTSC--CCCC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECT
T ss_pred ceeeeeeCCCC--cccc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECC
Confidence 45555553222 1233 35778899999999999888777788999999999999987642 23346788999999998
Q ss_pred ccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeeh
Q 021480 85 NFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFL 164 (312)
Q Consensus 85 ~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 164 (312)
+|.... .....+..+++|+.++++.+..... + ...+..+++|+.|+++.+.+
T Consensus 118 ~n~l~~-----------------~~~~~~~~l~~L~~L~L~~n~l~~~---------~--~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 118 ENQLQS-----------------LPDGVFDKLTNLTYLNLAHNQLQSL---------P--KGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp TSCCCC-----------------CCTTTTTTCTTCCEEECCSSCCCCC---------C--TTTTTTCTTCCEEECCSSCC
T ss_pred CCcCCc-----------------cCHHHhccCCCCCEEECCCCccCcc---------C--HHHhccCccCCEEECCCCCc
Confidence 874321 1112245688899998875432110 0 12356788999999988765
Q ss_pred hhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480 165 KYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 165 ~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
. +..+..+ ..+++|++|.+..+.-. + ..+..+..+++|+.|++..++.
T Consensus 170 ~----~~~~~~~-~~l~~L~~L~L~~N~l~--~--~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 170 Q----SLPEGVF-DKLTQLKDLRLYQNQLK--S--VPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp C----CCCTTTT-TTCTTCCEEECCSSCCS--C--CCTTTTTTCTTCCEEECCSSCB
T ss_pred C----ccCHHHh-cCCccCCEEECCCCcCC--c--cCHHHHhCCcCCCEEEccCCCc
Confidence 3 1111112 24678888888543211 1 1234568889999999977653
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.60 E-value=2.5e-08 Score=85.32 Aligned_cols=211 Identities=18% Similarity=0.085 Sum_probs=134.6
Q ss_pred cccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEE--EeCCCcce
Q 021480 25 LFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN--IDAPNLQF 101 (312)
Q Consensus 25 l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~--i~~p~L~~ 101 (312)
+.++++++.+++.++.+.. |..+ .++++.|+|+++.+++- ....+..++.|+.|++.++.... +. -..++|+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCE-EECCSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCc-ccCCCCCCcCCE
Confidence 4567889999999998876 3333 47899999999988642 22457889999999999885322 22 24578999
Q ss_pred EEEeec-ccce--eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCc
Q 021480 102 FDIGGV-FDDV--TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPR 178 (312)
Q Consensus 102 L~~~~~-~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~ 178 (312)
|.++++ +..+ .+..+++|+.++++.+....- + ...+.++++|+.|.+..+.+..+ +.....
T Consensus 82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l---------~--~~~~~~l~~L~~L~L~~N~l~~~-----~~~~~~ 145 (290)
T 1p9a_G 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL---------P--LGALRGLGELQELYLKGNELKTL-----PPGLLT 145 (290)
T ss_dssp EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC---------C--SSTTTTCTTCCEEECTTSCCCCC-----CTTTTT
T ss_pred EECCCCcCCcCchhhccCCCCCEEECCCCcCccc---------C--HHHHcCCCCCCEEECCCCCCCcc-----Chhhcc
Confidence 999874 3222 345788999999875432110 0 12356789999999998866422 222222
Q ss_pred ccCCcceEEEEEEcCChhhHHHH-HHhhhcCCCcceEEEEeccCCCCCcccccccccccccccccCceEEEEEe--Eecc
Q 021480 179 PCVDLNYLSIRINFNDLEENLAA-LCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVG--ISGI 255 (312)
Q Consensus 179 ~f~~L~~L~l~~~~~~~~~~~~l-~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~--~~~~ 255 (312)
.+++|+.|.++.+.- . .+ ...+..+++|+.|.+..+....- +.. -....+|+.+.+.+ +...
T Consensus 146 ~l~~L~~L~L~~N~l--~---~l~~~~~~~l~~L~~L~L~~N~l~~i---p~~-------~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 146 PTPKLEKLSLANNNL--T---ELPAGLLNGLENLDTLLLQENSLYTI---PKG-------FFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TCTTCCEEECTTSCC--S---CCCTTTTTTCTTCCEEECCSSCCCCC---CTT-------TTTTCCCSEEECCSCCBCCS
T ss_pred cccCCCEEECCCCcC--C---ccCHHHhcCcCCCCEEECCCCcCCcc---Chh-------hcccccCCeEEeCCCCccCc
Confidence 467888888843321 1 12 23567889999999977653210 000 01235788888774 3333
Q ss_pred hhHHHHHHHHHccCc
Q 021480 256 RSELEFIKFVLSNSP 270 (312)
Q Consensus 256 ~~~~~~~~~ll~~~~ 270 (312)
.....+..++-++..
T Consensus 211 c~~~~l~~wl~~~~~ 225 (290)
T 1p9a_G 211 CEILYFRRWLQDNAE 225 (290)
T ss_dssp GGGHHHHHHHHHTGG
T ss_pred CccHHHHHHHHhCcc
Confidence 445566666665543
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.60 E-value=8.9e-10 Score=95.31 Aligned_cols=175 Identities=15% Similarity=0.055 Sum_probs=113.3
Q ss_pred cCCcceEEEeeceeeCC--CCCC--CCCcccceeeecceeeChH--HH-HHHHhCCcccceeeeeccCCceeE---EEeC
Q 021480 27 LCQNLIHLELFNCLLKP--PSTF--KGFRNLKSLDLQHITLSQD--VF-ENLISSSPTLERLTLMNFDGFTHL---NIDA 96 (312)
Q Consensus 27 ~~~~L~~L~L~~~~l~~--~~~~--~~l~~L~~L~L~~~~~~~~--~l-~~ll~~cp~Le~L~l~~~~~~~~~---~i~~ 96 (312)
.+++|+.|++++|.+.. +..+ ..+++|++|+|++|.+++. .+ ..-+..++.|++|++.+|...... --..
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 34679999999998754 4455 7899999999999998752 11 123458999999999988642211 0145
Q ss_pred CCcceEEEeec-cc-------ceeeecCCcceEEEEeEEEeecCCccCCCCcchh-HHHHhhcCCCccEEEEeeeehhhh
Q 021480 97 PNLQFFDIGGV-FD-------DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCK-LLRFFVHLPHIRRLEIQSYFLKYL 167 (312)
Q Consensus 97 p~L~~L~~~~~-~~-------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~l~~L~l~~~~~~~l 167 (312)
++|++|.++++ +. ...+..+++|++++++.+... ..+. ...+++.+++|++|+++.+.+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------~l~~~~~~l~~~l~~L~~L~Ls~N~l~-- 237 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME---------TPTGVCAALAAAGVQPHSLDLSHNSLR-- 237 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---------CHHHHHHHHHHHTCCCSSEECTTSCCC--
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC---------chHHHHHHHHhcCCCCCEEECCCCCCC--
Confidence 78999999884 21 122357889999988754321 1111 1234678899999999988663
Q ss_pred cccCCCCCCCc--ccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480 168 AIGNVPSRLPR--PCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 168 ~~~~~~~~l~~--~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
+..|..+.. .+++|++|.++.+.-. .++..+ +++|+.|++..+..
T Consensus 238 --~~~p~~~~~~~~~~~L~~L~Ls~N~l~-----~lp~~~--~~~L~~L~Ls~N~l 284 (310)
T 4glp_A 238 --ATVNPSAPRCMWSSALNSLNLSFAGLE-----QVPKGL--PAKLRVLDLSSNRL 284 (310)
T ss_dssp --CCCCSCCSSCCCCTTCCCEECCSSCCC-----SCCSCC--CSCCSCEECCSCCC
T ss_pred --ccchhhHHhccCcCcCCEEECCCCCCC-----chhhhh--cCCCCEEECCCCcC
Confidence 222322222 1268999988543211 133322 48999999987753
No 93
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.59 E-value=3.5e-08 Score=80.87 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=99.2
Q ss_pred EecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc
Q 021480 12 EIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF 89 (312)
Q Consensus 12 ~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~ 89 (312)
++.......+|..+. ++|+.|++++|.+.. +..+..+++|+.|+|+++.++.- .+..+.+++.|++|+++++...
T Consensus 17 ~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 17 DCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp ECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCCC
T ss_pred EcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcCC
Confidence 344444457777654 789999999998764 34678899999999999987542 2345678899999999877432
Q ss_pred eeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcc
Q 021480 90 THLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAI 169 (312)
Q Consensus 90 ~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~ 169 (312)
. +....+..+++|+.++++.+....- . ...+..+++|+.|++..+.+..+.
T Consensus 94 ~-----------------l~~~~f~~l~~L~~L~L~~N~l~~~--------~---~~~~~~l~~L~~L~L~~N~l~~~~- 144 (220)
T 2v9t_B 94 E-----------------LPKSLFEGLFSLQLLLLNANKINCL--------R---VDAFQDLHNLNLLSLYDNKLQTIA- 144 (220)
T ss_dssp C-----------------CCTTTTTTCTTCCEEECCSSCCCCC--------C---TTTTTTCTTCCEEECCSSCCSCCC-
T ss_pred c-----------------cCHhHccCCCCCCEEECCCCCCCEe--------C---HHHcCCCCCCCEEECCCCcCCEEC-
Confidence 1 1122245678888888865432110 0 123557889999999887664221
Q ss_pred cCCCCCCCcccCCcceEEEEEE-cCChhhHHHHHHhhhcC
Q 021480 170 GNVPSRLPRPCVDLNYLSIRIN-FNDLEENLAALCLLRSS 208 (312)
Q Consensus 170 ~~~~~~l~~~f~~L~~L~l~~~-~~~~~~~~~l~~~L~~~ 208 (312)
+..+ ..+++|+.|.+..+ +.-.-++.++...+..-
T Consensus 145 ---~~~~-~~l~~L~~L~L~~N~~~c~c~l~~l~~~l~~~ 180 (220)
T 2v9t_B 145 ---KGTF-SPLRAIQTMHLAQNPFICDCHLKWLADYLHTN 180 (220)
T ss_dssp ---TTTT-TTCTTCCEEECCSSCEECSGGGHHHHHHHHHC
T ss_pred ---HHHH-hCCCCCCEEEeCCCCcCCCCccHHHHHHHHhC
Confidence 1112 23677888888432 11112334555555443
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.57 E-value=2.3e-08 Score=81.11 Aligned_cols=162 Identities=18% Similarity=0.176 Sum_probs=102.2
Q ss_pred ecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce
Q 021480 13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT 90 (312)
Q Consensus 13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~ 90 (312)
+...+...+|..+ .++|+.|+++++.+.. +..+..+++|++|+++++.+++- ....+..++.|++|++.++....
T Consensus 14 c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 14 CYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp CCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCC
T ss_pred ecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCc
Confidence 3433445677665 3589999999998865 23467899999999999987632 22346788999999998774321
Q ss_pred eEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhccc
Q 021480 91 HLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIG 170 (312)
Q Consensus 91 ~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~ 170 (312)
+....+..+++|+.++++.+....- + ...+..+++|+.|++..+.+..
T Consensus 91 -----------------~~~~~~~~l~~L~~L~L~~N~l~~~---------~--~~~~~~l~~L~~L~l~~N~l~~---- 138 (208)
T 2o6s_A 91 -----------------LPNGVFDKLTQLKELALNTNQLQSL---------P--DGVFDKLTQLKDLRLYQNQLKS---- 138 (208)
T ss_dssp -----------------CCTTTTTTCTTCCEEECCSSCCCCC---------C--TTTTTTCTTCCEEECCSSCCSC----
T ss_pred -----------------cCHhHhcCccCCCEEEcCCCcCccc---------C--HhHhccCCcCCEEECCCCccce----
Confidence 1111245678888888764322100 0 1235578899999998775531
Q ss_pred CCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480 171 NVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 171 ~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
.+......+++|++|.+..+ . +...||+|+.|.+..+..
T Consensus 139 -~~~~~~~~l~~L~~L~l~~N--~---------~~~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 139 -VPDGVFDRLTSLQYIWLHDN--P---------WDCTCPGIRYLSEWINKH 177 (208)
T ss_dssp -CCTTTTTTCTTCCEEECCSC--C---------BCCCTTTTHHHHHHHHHC
T ss_pred -eCHHHhccCCCccEEEecCC--C---------eecCCCCHHHHHHHHHhC
Confidence 22211124677888777433 1 224677888877765543
No 95
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.56 E-value=1.1e-08 Score=90.16 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=38.6
Q ss_pred CcceEEEeeceeeCC-C---------CCCCCCcccceeeecceeeC--------hHHHHHHHhCCcccceeeeeccC
Q 021480 29 QNLIHLELFNCLLKP-P---------STFKGFRNLKSLDLQHITLS--------QDVFENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 29 ~~L~~L~L~~~~l~~-~---------~~~~~l~~L~~L~L~~~~~~--------~~~l~~ll~~cp~Le~L~l~~~~ 87 (312)
++++.|.++.+.++. . .....|++|+.|.+.++... ..++..++..+|.|++|.+.++.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~ 183 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN 183 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC
Confidence 456677777666441 1 12335778888888665331 12366788899999999998763
No 96
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.55 E-value=2.4e-09 Score=92.90 Aligned_cols=214 Identities=14% Similarity=0.073 Sum_probs=134.2
Q ss_pred cCCcceEEEeeceeeCCC--CCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEE
Q 021480 27 LCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI 104 (312)
Q Consensus 27 ~~~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~ 104 (312)
.+++|+.|+|++|.+... ..+..+++|++|+|+++.+++.. . +..++.|++|++++|... .+. ..++|+.|.+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~l~-~l~-~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYVQ-ELL-VGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSEEE-EEE-ECTTCCEEEC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCccc-ccc-CCCCcCEEEC
Confidence 467899999999988763 35789999999999999876421 1 788999999999988532 233 3489999999
Q ss_pred eec-ccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCc
Q 021480 105 GGV-FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDL 183 (312)
Q Consensus 105 ~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L 183 (312)
.++ +..+....+++|+.++++.+.... .. ...+..+++|+.|+++.+.+..+ .+..+...+++|
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~---------~~--~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~~l~~L 171 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNKITM---------LR--DLDEGCRSRVQYLDLKLNEIDTV----NFAELAASSDTL 171 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSCCCS---------GG--GBCTGGGSSEEEEECTTSCCCEE----EGGGGGGGTTTC
T ss_pred CCCccCCcCccccCCCCEEECCCCCCCC---------cc--chhhhccCCCCEEECCCCCCCcc----cHHHHhhccCcC
Confidence 884 444445568899999987543211 00 11245689999999988765422 112222246789
Q ss_pred ceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccCCCCCcccccccccccccccccCceEEEEEeEecchhHHHHHH
Q 021480 184 NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPEETGIGVLTNFWEVDHWTSLFSQLRMVKIVGISGIRSELEFIK 263 (312)
Q Consensus 184 ~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~~~~~~~~~~~w~~~~~~~~~~~L~~v~i~~~~~~~~~~~~~~ 263 (312)
++|.++.+.- .+ ++. ...+++|+.|++..+..... +.. + ....+|+.+.+.+-.-.. +.
T Consensus 172 ~~L~L~~N~l--~~---~~~-~~~l~~L~~L~Ls~N~l~~l---~~~-~------~~l~~L~~L~L~~N~l~~-----l~ 230 (317)
T 3o53_A 172 EHLNLQYNFI--YD---VKG-QVVFAKLKTLDLSSNKLAFM---GPE-F------QSAAGVTWISLRNNKLVL-----IE 230 (317)
T ss_dssp CEEECTTSCC--CE---EEC-CCCCTTCCEEECCSSCCCEE---CGG-G------GGGTTCSEEECTTSCCCE-----EC
T ss_pred CEEECCCCcC--cc---ccc-ccccccCCEEECCCCcCCcc---hhh-h------cccCcccEEECcCCcccc-----hh
Confidence 9988843321 11 111 12489999999987653210 000 0 113566666665311110 01
Q ss_pred HHHccCcccceeEEecCC
Q 021480 264 FVLSNSPVLETMTIKPAS 281 (312)
Q Consensus 264 ~ll~~~~~Le~~~i~~~~ 281 (312)
.-+...+.|+.+.+..+.
T Consensus 231 ~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp TTCCCCTTCCEEECTTCC
T ss_pred hHhhcCCCCCEEEccCCC
Confidence 113556677777776654
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.54 E-value=3e-08 Score=82.22 Aligned_cols=187 Identities=11% Similarity=0.077 Sum_probs=116.7
Q ss_pred CCceEEEEEecCCcceecCC-CcccCCcceEEEeecee-eCC--CCCCCCCcccceeeecc-eeeChHHHHHHHhCCccc
Q 021480 4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCL-LKP--PSTFKGFRNLKSLDLQH-ITLSQDVFENLISSSPTL 78 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~-l~~--~~~~~~l~~L~~L~L~~-~~~~~~~l~~ll~~cp~L 78 (312)
.++++|+++.... ..+|. .+..+++|+.|++++|. +.. +..+.++++|++|++++ +.++.- ....+.+++.|
T Consensus 31 ~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTC
T ss_pred CcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCC
Confidence 3678888865543 36666 56689999999999996 654 34678999999999998 766531 12356789999
Q ss_pred ceeeeeccCCceeEE--EeCCCcc---eEEEeec--ccce---eeecCCcce-EEEEeEEEeecCCccCCCCcchhHHHH
Q 021480 79 ERLTLMNFDGFTHLN--IDAPNLQ---FFDIGGV--FDDV---TFENTFHLA-LVSIGLYVNVKNDQAMGPGNSCKLLRF 147 (312)
Q Consensus 79 e~L~l~~~~~~~~~~--i~~p~L~---~L~~~~~--~~~~---~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~~~~~~ 147 (312)
++|++.+|.... +. -..++|+ .|.+.++ +..+ .+..+++|+ .++++.+.... .+ ...
T Consensus 108 ~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~---------i~--~~~ 175 (239)
T 2xwt_C 108 KFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS---------VQ--GYA 175 (239)
T ss_dssp CEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE---------EC--TTT
T ss_pred CEEeCCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc---------cC--Hhh
Confidence 999999885321 11 1234565 8888875 2222 256788999 98886442210 00 011
Q ss_pred hhcCCCccEEEEeeee-hhhhcccCCCCCCCccc-CCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEe
Q 021480 148 FVHLPHIRRLEIQSYF-LKYLAIGNVPSRLPRPC-VDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLA 218 (312)
Q Consensus 148 l~~l~~l~~L~l~~~~-~~~l~~~~~~~~l~~~f-~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~ 218 (312)
+.. ++++.|++..+. +..+.. ..+. .+ ++|+.|.+..+. .. .++. ..+++|+.|.+..
T Consensus 176 ~~~-~~L~~L~L~~n~~l~~i~~----~~~~-~l~~~L~~L~l~~N~--l~---~l~~--~~~~~L~~L~l~~ 235 (239)
T 2xwt_C 176 FNG-TKLDAVYLNKNKYLTVIDK----DAFG-GVYSGPSLLDVSQTS--VT---ALPS--KGLEHLKELIARN 235 (239)
T ss_dssp TTT-CEEEEEECTTCTTCCEECT----TTTT-TCSBCCSEEECTTCC--CC---CCCC--TTCTTCSEEECTT
T ss_pred cCC-CCCCEEEcCCCCCcccCCH----HHhh-ccccCCcEEECCCCc--cc---cCCh--hHhccCceeeccC
Confidence 223 688999998773 432211 1122 35 788888874321 11 1221 2578888888754
No 98
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.54 E-value=2.2e-08 Score=95.86 Aligned_cols=79 Identities=25% Similarity=0.292 Sum_probs=35.2
Q ss_pred CceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480 5 CVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 81 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 81 (312)
+++.|+++.+. ...+|. .+..+++|++|++++|.+.. +..+..+++|++|+++++.+++. ....+..+++|++|
T Consensus 74 ~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 74 MLKVLNLQHNE--LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLENLQEL 150 (680)
T ss_dssp TCCEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCTTCCEE
T ss_pred CcCEEECCCCc--cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccccc-CchhhcccccCCEE
Confidence 34555553322 224444 24455555555555554433 12344555555555555544321 11122344444444
Q ss_pred eeecc
Q 021480 82 TLMNF 86 (312)
Q Consensus 82 ~l~~~ 86 (312)
++.+|
T Consensus 151 ~L~~n 155 (680)
T 1ziw_A 151 LLSNN 155 (680)
T ss_dssp ECCSS
T ss_pred EccCC
Confidence 44443
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.54 E-value=4.3e-08 Score=83.92 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=112.7
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM 84 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 84 (312)
++++|+++.+ ....+| .+..+++|+.|++++|.+...+.+..+++|+.|+++++.+++ ++. +..++.|+.|++.
T Consensus 47 ~L~~L~l~~~--~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNS--DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTS--CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECT
T ss_pred cccEEEccCC--CcccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECC
Confidence 3556655333 223454 477889999999999988774448899999999999999865 222 7899999999999
Q ss_pred ccCCceeEE--EeCCCcceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480 85 NFDGFTHLN--IDAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 160 (312)
Q Consensus 85 ~~~~~~~~~--i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 160 (312)
+|.... +. -..++|+.|.++++ +..+ .+..+++|+.++++.+... ... . +..+++|+.|+++
T Consensus 121 ~n~i~~-~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~---------~~~---~-l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 121 HNGISD-INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS---------DIV---P-LAGLTKLQNLYLS 186 (291)
T ss_dssp TSCCCC-CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC---------CCG---G-GTTCTTCCEEECC
T ss_pred CCcCCC-ChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccc---------cch---h-hcCCCccCEEECC
Confidence 885322 10 13478999999874 3332 3567899999998754321 111 2 6688999999999
Q ss_pred eeehhhhcccCCCCCCCcccCCcceEEEEEE
Q 021480 161 SYFLKYLAIGNVPSRLPRPCVDLNYLSIRIN 191 (312)
Q Consensus 161 ~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~ 191 (312)
.+.+..+ +. +. .+++|+.|.+..+
T Consensus 187 ~N~i~~l-----~~-l~-~l~~L~~L~l~~n 210 (291)
T 1h6t_A 187 KNHISDL-----RA-LA-GLKNLDVLELFSQ 210 (291)
T ss_dssp SSCCCBC-----GG-GT-TCTTCSEEEEEEE
T ss_pred CCcCCCC-----hh-hc-cCCCCCEEECcCC
Confidence 9876533 21 22 4789999999654
No 100
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.51 E-value=3.6e-07 Score=86.27 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=71.1
Q ss_pred cceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE
Q 021480 17 QRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI 94 (312)
Q Consensus 17 ~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i 94 (312)
+...+|..+- +++++|+|++|.+.. +..|.++++|+.|+|++|.++.- .+..+.++++|++|+|++|.- ..+..
T Consensus 42 ~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l-~~l~~ 117 (635)
T 4g8a_A 42 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI-QSLAL 117 (635)
T ss_dssp CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC-CEECG
T ss_pred CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcC-CCCCH
Confidence 3345555442 356777777776543 33466677777777777665421 112356667777777766632 11211
Q ss_pred ----eCCCcceEEEeec-c---cceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeeh
Q 021480 95 ----DAPNLQFFDIGGV-F---DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFL 164 (312)
Q Consensus 95 ----~~p~L~~L~~~~~-~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~ 164 (312)
..++|++|.+.++ + ....+.++++|+.++++.+..... .. ..+++.++++++|+++.+.+
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~-------~~---~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-------KL---PEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-------CC---CGGGGGCTTCCEEECCSSCC
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC-------CC---chhhccchhhhhhcccCccc
Confidence 2356666666652 1 223355677777777654321100 00 12345666777777665543
No 101
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.51 E-value=6e-08 Score=91.55 Aligned_cols=159 Identities=15% Similarity=0.017 Sum_probs=79.4
Q ss_pred CCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHH-----------------HhCCcccceeeeeccCCce
Q 021480 28 CQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENL-----------------ISSSPTLERLTLMNFDGFT 90 (312)
Q Consensus 28 ~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l-----------------l~~cp~Le~L~l~~~~~~~ 90 (312)
.++|+.|++++|.+...+. .+++|++|++++|.+++ ++.. -..++.|+.|++++|...
T Consensus 120 l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~--l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~- 194 (622)
T 3g06_A 120 PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS--LPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA- 194 (622)
T ss_dssp CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC--CCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-
T ss_pred CCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCcCCC--cCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC-
Confidence 3556666666665544222 23566666666665542 1100 022344555555544321
Q ss_pred eEEEeCCCcceEEEeecc-cceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcc
Q 021480 91 HLNIDAPNLQFFDIGGVF-DDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAI 169 (312)
Q Consensus 91 ~~~i~~p~L~~L~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~ 169 (312)
.+.-..++|+.|.+.++. ..+. ...++|+.++++.+... .+...+++|+.|+++.+.+.
T Consensus 195 ~l~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N~L~---------------~lp~~l~~L~~L~Ls~N~L~---- 254 (622)
T 3g06_A 195 SLPTLPSELYKLWAYNNRLTSLP-ALPSGLKELIVSGNRLT---------------SLPVLPSELKELMVSGNRLT---- 254 (622)
T ss_dssp CCCCCCTTCCEEECCSSCCSSCC-CCCTTCCEEECCSSCCS---------------CCCCCCTTCCEEECCSSCCS----
T ss_pred CCCCccchhhEEECcCCcccccC-CCCCCCCEEEccCCccC---------------cCCCCCCcCcEEECCCCCCC----
Confidence 111123455555555421 1111 12355666666432111 11134577788887776542
Q ss_pred cCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480 170 GNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 170 ~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
.+|..+++|++|.++.+.- . .++..+..+|+|+.|++..+..
T Consensus 255 -----~lp~~~~~L~~L~Ls~N~L--~---~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 255 -----SLPMLPSGLLSLSVYRNQL--T---RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -----CCCCCCTTCCEEECCSSCC--C---SCCGGGGGSCTTCEEECCSCCC
T ss_pred -----cCCcccccCcEEeCCCCCC--C---cCCHHHhhccccCEEEecCCCC
Confidence 1222466788888743321 1 2455577888898888887653
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.49 E-value=5.2e-08 Score=91.76 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=92.4
Q ss_pred ecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCcee-EEEeCCC
Q 021480 20 KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTH-LNIDAPN 98 (312)
Q Consensus 20 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~-~~i~~p~ 98 (312)
.+| .+..+++|+.|+|++|.+...+.+..+++|+.|+|++|.+.+ ++ .+..++.|+.|+|.+|..... --...++
T Consensus 57 ~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~ 132 (605)
T 1m9s_A 57 SVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNGISDINGLVHLPQ 132 (605)
T ss_dssp CCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCCCGGGGGCTT
T ss_pred CCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCCCccccCCCc
Confidence 344 466788888888888877664447788888888888887754 22 467788888888887743210 0013467
Q ss_pred cceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCC
Q 021480 99 LQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRL 176 (312)
Q Consensus 99 L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l 176 (312)
|+.|.++++ +..+ .+..+++|+.|+++.+... .. .. +..+++|+.|+++.+.+..+ + .+
T Consensus 133 L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~---------~~---~~-l~~l~~L~~L~Ls~N~i~~l-----~-~l 193 (605)
T 1m9s_A 133 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS---------DI---VP-LAGLTKLQNLYLSKNHISDL-----R-AL 193 (605)
T ss_dssp CSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCC---------CC---GG-GTTCTTCCEEECCSSCCCBC-----G-GG
T ss_pred cCEEECCCCccCCchhhcccCCCCEEECcCCcCC---------Cc---hh-hccCCCCCEEECcCCCCCCC-----h-HH
Confidence 888887763 2222 2456788888887644221 00 11 56778888888887765432 1 12
Q ss_pred CcccCCcceEEEE
Q 021480 177 PRPCVDLNYLSIR 189 (312)
Q Consensus 177 ~~~f~~L~~L~l~ 189 (312)
. .+++|+.|.+.
T Consensus 194 ~-~l~~L~~L~L~ 205 (605)
T 1m9s_A 194 A-GLKNLDVLELF 205 (605)
T ss_dssp T-TCTTCSEEECC
T ss_pred c-cCCCCCEEEcc
Confidence 2 36778888874
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.49 E-value=1.5e-07 Score=77.60 Aligned_cols=140 Identities=19% Similarity=0.151 Sum_probs=90.4
Q ss_pred ecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce
Q 021480 13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT 90 (312)
Q Consensus 13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~ 90 (312)
+.......+|..+. ++|+.|+|++|.+.. +..+..+++|+.|+|+++.++.- ....+..++.|+.|+++++....
T Consensus 26 c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~ 102 (229)
T 3e6j_A 26 CRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQLTV 102 (229)
T ss_dssp CTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCC
T ss_pred ccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcCCc
Confidence 33334457777654 889999999998765 45578899999999999987431 12346788999999998774321
Q ss_pred eEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhccc
Q 021480 91 HLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIG 170 (312)
Q Consensus 91 ~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~ 170 (312)
+....+..+++|+.++++.+.... .+ .-+..+++|+.|+++.+.+..+..
T Consensus 103 -----------------l~~~~~~~l~~L~~L~Ls~N~l~~---------lp---~~~~~l~~L~~L~L~~N~l~~~~~- 152 (229)
T 3e6j_A 103 -----------------LPSAVFDRLVHLKELFMCCNKLTE---------LP---RGIERLTHLTHLALDQNQLKSIPH- 152 (229)
T ss_dssp -----------------CCTTTTTTCTTCCEEECCSSCCCS---------CC---TTGGGCTTCSEEECCSSCCCCCCT-
T ss_pred -----------------cChhHhCcchhhCeEeccCCcccc---------cC---cccccCCCCCEEECCCCcCCccCH-
Confidence 111123467888888876443210 01 124578889999998876542211
Q ss_pred CCCCCCCcccCCcceEEEE
Q 021480 171 NVPSRLPRPCVDLNYLSIR 189 (312)
Q Consensus 171 ~~~~~l~~~f~~L~~L~l~ 189 (312)
..+ ..+++|+.|.+.
T Consensus 153 ---~~~-~~l~~L~~L~l~ 167 (229)
T 3e6j_A 153 ---GAF-DRLSSLTHAYLF 167 (229)
T ss_dssp ---TTT-TTCTTCCEEECT
T ss_pred ---HHH-hCCCCCCEEEee
Confidence 112 246788888874
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.48 E-value=5e-08 Score=91.08 Aligned_cols=175 Identities=15% Similarity=0.108 Sum_probs=108.5
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM 84 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 84 (312)
+++.|+++.... ..+|..++ ++|+.|+|++|.+...+ ..+++|+.|++++|.+++ ++. +.. +|+.|++.
T Consensus 60 ~L~~L~Ls~n~L--~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNL--SSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCC--SCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCC--CccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hhc--CCCEEECC
Confidence 567777754432 35787764 78999999999887644 568899999999998865 333 332 89999998
Q ss_pred ccCCceeEEEeCCCcceEEEeec-ccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeee
Q 021480 85 NFDGFTHLNIDAPNLQFFDIGGV-FDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYF 163 (312)
Q Consensus 85 ~~~~~~~~~i~~p~L~~L~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 163 (312)
+|.... +.-..++|+.|.++++ +..+.- .+++|+.++++.+... ..+ . +. ++|+.|+++.+.
T Consensus 129 ~N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L~---------~lp---~-l~--~~L~~L~Ls~N~ 191 (571)
T 3cvr_A 129 NNQLTM-LPELPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQLT---------FLP---E-LP--ESLEALDVSTNL 191 (571)
T ss_dssp SSCCSC-CCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCS---------CCC---C-CC--TTCCEEECCSSC
T ss_pred CCcCCC-CCCcCccccEEeCCCCccCcCCC-cCCCcCEEECCCCCCC---------Ccc---h-hh--CCCCEEECcCCC
Confidence 875322 1115678888888874 222222 5678888888654321 111 1 22 678888888776
Q ss_pred hhhhcccCCCCCCCcccCCc-------ceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480 164 LKYLAIGNVPSRLPRPCVDL-------NYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 164 ~~~l~~~~~~~~l~~~f~~L-------~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
+.. .|. ++. +| +.|.++.+. .. .++.-+..+++|+.|++..+..
T Consensus 192 L~~-----lp~-~~~---~L~~~~~~L~~L~Ls~N~--l~---~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 192 LES-----LPA-VPV---RNHHSEETEIFFRCRENR--IT---HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CSS-----CCC-CC-----------CCEEEECCSSC--CC---CCCGGGGGSCTTEEEECCSSSC
T ss_pred CCc-----hhh-HHH---hhhcccccceEEecCCCc--ce---ecCHHHhcCCCCCEEEeeCCcC
Confidence 532 222 221 45 766664331 11 2444445588888888877654
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.48 E-value=7.2e-08 Score=83.20 Aligned_cols=165 Identities=16% Similarity=0.121 Sum_probs=106.2
Q ss_pred CCceEEEEEecCCc--ceecC-CCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChH-HHH--HHHhCC
Q 021480 4 SCVKEFILEIWKGQ--RYKVP-SSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQD-VFE--NLISSS 75 (312)
Q Consensus 4 ~~v~eL~l~~~~~~--~~~lp-~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~-~l~--~ll~~c 75 (312)
+++++|+++..... ...++ ..+..+++|++|+|++|.+.. +..+..+++|++|+|++|.+.+. .+. ..+..+
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 46778888654321 01111 233468899999999998765 35678999999999999987653 232 223688
Q ss_pred cccceeeeeccCCc--eeE----EEeCCCcceEEEeec-ccce---eeec---CCcceEEEEeEEEeecCCccCCCCcch
Q 021480 76 PTLERLTLMNFDGF--THL----NIDAPNLQFFDIGGV-FDDV---TFEN---TFHLALVSIGLYVNVKNDQAMGPGNSC 142 (312)
Q Consensus 76 p~Le~L~l~~~~~~--~~~----~i~~p~L~~L~~~~~-~~~~---~~~~---~~~L~~l~l~~~~~~~~~~~~~~~~~~ 142 (312)
|+|++|++++|... ... --..++|+.|.++++ +... .+.. +++|+.++++.+.... .+
T Consensus 197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~---------lp 267 (310)
T 4glp_A 197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ---------VP 267 (310)
T ss_dssp CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS---------CC
T ss_pred CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc---------hh
Confidence 99999999988542 111 113479999999874 2221 1333 3799999987543221 01
Q ss_pred hHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEE
Q 021480 143 KLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIR 189 (312)
Q Consensus 143 ~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~ 189 (312)
. . + .++|+.|+++.+.+..+ +. +..+++|+.|.++
T Consensus 268 ~--~-~--~~~L~~L~Ls~N~l~~~-----~~--~~~l~~L~~L~L~ 302 (310)
T 4glp_A 268 K--G-L--PAKLRVLDLSSNRLNRA-----PQ--PDELPEVDNLTLD 302 (310)
T ss_dssp S--C-C--CSCCSCEECCSCCCCSC-----CC--TTSCCCCSCEECS
T ss_pred h--h-h--cCCCCEEECCCCcCCCC-----ch--hhhCCCccEEECc
Confidence 0 1 1 27899999999877422 21 2357889998874
No 106
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.43 E-value=2e-07 Score=72.92 Aligned_cols=95 Identities=7% Similarity=0.121 Sum_probs=69.7
Q ss_pred ceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeeccee-eChHHHHHHHhC---CcccceeeeeccCCcee
Q 021480 18 RYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHIT-LSQDVFENLISS---SPTLERLTLMNFDGFTH 91 (312)
Q Consensus 18 ~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll~~---cp~Le~L~l~~~~~~~~ 91 (312)
...+|..-...-.|+.|++++|.+.+ ...+.+|++|++|+|++|. +++..+..+-.. |+.|++|++++|..++.
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 35677654445679999999998654 3446789999999999996 899888887653 78999999999976542
Q ss_pred EEEeCCCcceEEEeecccceeeecCCcceEEEEeEEE
Q 021480 92 LNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYV 128 (312)
Q Consensus 92 ~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~ 128 (312)
- ++.. +..+++|+.++++.+.
T Consensus 130 ~--------------Gl~~--L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 130 K--------------GIIA--LHHFRNLKYLFLSDLP 150 (176)
T ss_dssp H--------------HHHH--GGGCTTCCEEEEESCT
T ss_pred H--------------HHHH--HhcCCCCCEEECCCCC
Confidence 1 1221 3457888888887554
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.38 E-value=1.3e-07 Score=77.41 Aligned_cols=82 Identities=23% Similarity=0.260 Sum_probs=62.1
Q ss_pred CCceEEEEEecCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
.++++|+++... ...+|. .+..+++|+.|+|++|.+.. +..+.++++|+.|+|+++.++.- ....+.+++.|+.
T Consensus 32 ~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 32 ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQL 108 (220)
T ss_dssp TTCCEEECCSSC--CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCE
Confidence 356777775443 235665 56678999999999998764 56789999999999999988631 2234678999999
Q ss_pred eeeeccCC
Q 021480 81 LTLMNFDG 88 (312)
Q Consensus 81 L~l~~~~~ 88 (312)
|++.++..
T Consensus 109 L~L~~N~l 116 (220)
T 2v9t_B 109 LLLNANKI 116 (220)
T ss_dssp EECCSSCC
T ss_pred EECCCCCC
Confidence 99998753
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.35 E-value=1.9e-07 Score=76.51 Aligned_cols=141 Identities=14% Similarity=0.133 Sum_probs=81.9
Q ss_pred ecCCcceecCCCcccCCcceEEEeeceeeCC---CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc
Q 021480 13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF 89 (312)
Q Consensus 13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~ 89 (312)
++......+|..+. +.++.|+|++|.+.. ...+..+++|+.|+|+++.+++- ....+..++.|++|+++++...
T Consensus 18 ~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~ 94 (220)
T 2v70_A 18 CSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILLTSNRLE 94 (220)
T ss_dssp CCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCC
T ss_pred eCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEECCCCccC
Confidence 33333346676553 456788888887654 22367888888888888876532 1224567788888888776432
Q ss_pred eeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcc
Q 021480 90 THLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAI 169 (312)
Q Consensus 90 ~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~ 169 (312)
. ...-.+..+++|+.++++.+..... . ...+..+++|+.|++..+.+..
T Consensus 95 ~-----------------~~~~~~~~l~~L~~L~Ls~N~l~~~--------~---~~~~~~l~~L~~L~L~~N~l~~--- 143 (220)
T 2v70_A 95 N-----------------VQHKMFKGLESLKTLMLRSNRITCV--------G---NDSFIGLSSVRLLSLYDNQITT--- 143 (220)
T ss_dssp C-----------------CCGGGGTTCSSCCEEECTTSCCCCB--------C---TTSSTTCTTCSEEECTTSCCCC---
T ss_pred c-----------------cCHhHhcCCcCCCEEECCCCcCCeE--------C---HhHcCCCccCCEEECCCCcCCE---
Confidence 1 1111245677788877764332100 0 1224567888888887775532
Q ss_pred cCCCCCCCcccCCcceEEEE
Q 021480 170 GNVPSRLPRPCVDLNYLSIR 189 (312)
Q Consensus 170 ~~~~~~l~~~f~~L~~L~l~ 189 (312)
..+..+. .+++|+.|.+.
T Consensus 144 -~~~~~~~-~l~~L~~L~L~ 161 (220)
T 2v70_A 144 -VAPGAFD-TLHSLSTLNLL 161 (220)
T ss_dssp -BCTTTTT-TCTTCCEEECC
T ss_pred -ECHHHhc-CCCCCCEEEec
Confidence 1222222 36677777774
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.34 E-value=2.1e-07 Score=76.21 Aligned_cols=128 Identities=13% Similarity=0.058 Sum_probs=81.9
Q ss_pred CceEEEEEecCCcceecC-C-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 5 CVKEFILEIWKGQRYKVP-S-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp-~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
.+++|+++.... ..++ . .+..+++|+.|+|++|.+.. +..+.++++|+.|+|+++.+++- ....+..++.|++
T Consensus 33 ~~~~L~L~~N~l--~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 109 (220)
T 2v70_A 33 YTAELRLNNNEF--TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKT 109 (220)
T ss_dssp TCSEEECCSSCC--CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCE
T ss_pred CCCEEEcCCCcC--CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCE
Confidence 456666654432 3443 2 35678999999999998765 34688999999999999988642 2345788999999
Q ss_pred eeeeccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480 81 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 160 (312)
Q Consensus 81 L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 160 (312)
|+++++.... .....+..+++|+.++++.+..... . ...+..+++++.|++.
T Consensus 110 L~Ls~N~l~~-----------------~~~~~~~~l~~L~~L~L~~N~l~~~--------~---~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 110 LMLRSNRITC-----------------VGNDSFIGLSSVRLLSLYDNQITTV--------A---PGAFDTLHSLSTLNLL 161 (220)
T ss_dssp EECTTSCCCC-----------------BCTTSSTTCTTCSEEECTTSCCCCB--------C---TTTTTTCTTCCEEECC
T ss_pred EECCCCcCCe-----------------ECHhHcCCCccCCEEECCCCcCCEE--------C---HHHhcCCCCCCEEEec
Confidence 9999875321 1111234566677776653321100 0 1224456777777776
Q ss_pred eee
Q 021480 161 SYF 163 (312)
Q Consensus 161 ~~~ 163 (312)
++.
T Consensus 162 ~N~ 164 (220)
T 2v70_A 162 ANP 164 (220)
T ss_dssp SCC
T ss_pred CcC
Confidence 554
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.31 E-value=1.1e-07 Score=80.01 Aligned_cols=140 Identities=16% Similarity=0.165 Sum_probs=97.3
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM 84 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 84 (312)
+++.|+++.+ ....+| .+..+++|+.|+|++|.+...+.+..+++|+.|+++++.+++ ++.+ .. +.|+.|++.
T Consensus 42 ~L~~L~l~~n--~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~--l~~~-~~-~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNS--NIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN--LNGI-PS-ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTS--CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC--CTTC-CC-SSCCEEECC
T ss_pred cCcEEECcCC--Ccccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC--cCcc-cc-CcccEEEcc
Confidence 4556665433 233566 677889999999999988774448899999999999998865 2222 23 899999999
Q ss_pred ccCCcee-EEEeCCCcceEEEeec-ccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEee
Q 021480 85 NFDGFTH-LNIDAPNLQFFDIGGV-FDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS 161 (312)
Q Consensus 85 ~~~~~~~-~~i~~p~L~~L~~~~~-~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 161 (312)
+|..... ---..++|+.|.+.++ +..+ .+..+++|+.++++.+.... . ..+..+++|+.|++.+
T Consensus 115 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~---------~----~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN---------T----GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp SSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB---------C----TTSTTCCCCCEEEEEE
T ss_pred CCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc---------h----HHhccCCCCCEEeCCC
Confidence 8853210 0013478999988874 3222 35678999999987543211 1 3366789999999998
Q ss_pred eeh
Q 021480 162 YFL 164 (312)
Q Consensus 162 ~~~ 164 (312)
+.+
T Consensus 182 N~~ 184 (263)
T 1xeu_A 182 QKC 184 (263)
T ss_dssp EEE
T ss_pred Ccc
Confidence 865
No 111
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.31 E-value=8.9e-08 Score=77.02 Aligned_cols=65 Identities=28% Similarity=0.304 Sum_probs=37.1
Q ss_pred ecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021480 20 KVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 86 (312)
Q Consensus 20 ~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~ 86 (312)
.+|..+..+++|+.|++++|.+...+.+..+++|+.|++++|.++. ++..+..+|.|+.|++++|
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN 103 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE
T ss_pred hhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC
Confidence 3344555566666666666666553355566666666666666542 3334444556666666554
No 112
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.26 E-value=3.4e-07 Score=86.45 Aligned_cols=124 Identities=16% Similarity=0.140 Sum_probs=78.7
Q ss_pred CCc-ccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE----eCCCcceEEEeec-ccce---eeecCCcc
Q 021480 49 GFR-NLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI----DAPNLQFFDIGGV-FDDV---TFENTFHL 119 (312)
Q Consensus 49 ~l~-~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i----~~p~L~~L~~~~~-~~~~---~~~~~~~L 119 (312)
++| +++.|+|+++.++.- .+..+.+++.|++|++++|.-. .+.- ..++|++|.++++ +..+ .+.++++|
T Consensus 49 ~lp~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp SSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred CCCcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 444 799999999988641 1235789999999999988532 2321 2478899988874 3222 35678899
Q ss_pred eEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEE
Q 021480 120 ALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIR 189 (312)
Q Consensus 120 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~ 189 (312)
++++++.+....- + ...++++++|+.|++..+.+..+ ..+..+ ..+++|++|.+.
T Consensus 127 ~~L~Ls~N~l~~l---------~--~~~~~~L~~L~~L~Ls~N~l~~~---~~~~~~-~~l~~L~~L~L~ 181 (635)
T 4g8a_A 127 QKLVAVETNLASL---------E--NFPIGHLKTLKELNVAHNLIQSF---KLPEYF-SNLTNLEHLDLS 181 (635)
T ss_dssp CEEECTTSCCCCS---------T--TCCCTTCTTCCEEECCSSCCCCC---CCCGGG-GGCTTCCEEECC
T ss_pred CEEECCCCcCCCC---------C--hhhhhcCcccCeeccccCccccC---CCchhh-ccchhhhhhccc
Confidence 9998865432110 0 01256788999999987765311 112111 235677777764
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.24 E-value=2.6e-07 Score=81.15 Aligned_cols=189 Identities=19% Similarity=0.243 Sum_probs=105.5
Q ss_pred EEecCCcceecCCCcccCCcceEEEeeceeeCC-C-CCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCC
Q 021480 11 LEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG 88 (312)
Q Consensus 11 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~ 88 (312)
+++.......+|..+. ++++.|+|++|.+.. + ..|.++++|++|+|++|.+.+..-...+.+++.|.++.+.++..
T Consensus 14 v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 14 FLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4455444467887763 689999999998865 3 35789999999999998753321123467788888766666555
Q ss_pred ceeEE----EeCCCcceEEEeec-cc---ceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcC-CCccEEEE
Q 021480 89 FTHLN----IDAPNLQFFDIGGV-FD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHL-PHIRRLEI 159 (312)
Q Consensus 89 ~~~~~----i~~p~L~~L~~~~~-~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~l~~L~l 159 (312)
+..+. -..++|+.|.+.++ +. ........++..+++..+..... .+ ...+..+ ..++.|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~--------l~--~~~f~~~~~~l~~L~L 161 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT--------IE--RNSFVGLSFESVILWL 161 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE--------EC--TTSSTTSBSSCEEEEC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc--------cc--ccchhhcchhhhhhcc
Confidence 44442 13478888888873 22 22222344555555532111100 00 0112223 45788888
Q ss_pred eeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHH-HhhhcCCCcceEEEEeccC
Q 021480 160 QSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAAL-CLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 160 ~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~-~~L~~~p~Le~L~l~~~~~ 221 (312)
+.+.++.+.. ... ...+|++|.+..+ .... .++ ..+..+++|+.|++..+..
T Consensus 162 ~~N~i~~i~~-----~~f-~~~~L~~l~l~~~-n~l~---~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 162 NKNGIQEIHN-----SAF-NGTQLDELNLSDN-NNLE---ELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp CSSCCCEECT-----TSS-TTEEEEEEECTTC-TTCC---CCCTTTTTTEECCSEEECTTSCC
T ss_pred ccccccCCCh-----hhc-cccchhHHhhccC-Cccc---CCCHHHhccCcccchhhcCCCCc
Confidence 8776542211 110 1223444443111 1111 232 3467889999999877653
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.23 E-value=5.7e-07 Score=72.74 Aligned_cols=80 Identities=20% Similarity=0.163 Sum_probs=60.1
Q ss_pred CceEEEEEecCCcceecCCC-cccCCcceEEEeeceeeCC-C-CCCCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480 5 CVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 81 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 81 (312)
++++|+++.... ..+|.. +..+++|+.|++++|.+.. + ..+..+++|++|+++++.+++- ....+..++.|++|
T Consensus 29 ~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 29 QTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKEL 105 (208)
T ss_dssp TCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEE
Confidence 567777754433 356665 4578999999999998865 2 3368899999999999987632 22346789999999
Q ss_pred eeeccC
Q 021480 82 TLMNFD 87 (312)
Q Consensus 82 ~l~~~~ 87 (312)
++.++.
T Consensus 106 ~L~~N~ 111 (208)
T 2o6s_A 106 ALNTNQ 111 (208)
T ss_dssp ECCSSC
T ss_pred EcCCCc
Confidence 998774
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.21 E-value=6.2e-07 Score=73.81 Aligned_cols=128 Identities=18% Similarity=0.068 Sum_probs=84.7
Q ss_pred CCceEEEEEecCCcceec-CCCcccCCcceEEEeeceeeCCC--CCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKPP--STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
.+++.|+++.... ..+ |..+..+++|+.|+|++|.+... ..+.++++|+.|+|++|.++.- ....+..++.|+.
T Consensus 40 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCe
Confidence 4577777755443 244 55677899999999999988652 3468999999999999988642 2234678999999
Q ss_pred eeeeccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEe
Q 021480 81 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQ 160 (312)
Q Consensus 81 L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~ 160 (312)
|++.++.... + | ..+..+++|+.++++.+.... .+ ...+..+++++.|++.
T Consensus 117 L~Ls~N~l~~-l----p-------------~~~~~l~~L~~L~L~~N~l~~---------~~--~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 117 LFMCCNKLTE-L----P-------------RGIERLTHLTHLALDQNQLKS---------IP--HGAFDRLSSLTHAYLF 167 (229)
T ss_dssp EECCSSCCCS-C----C-------------TTGGGCTTCSEEECCSSCCCC---------CC--TTTTTTCTTCCEEECT
T ss_pred EeccCCcccc-c----C-------------cccccCCCCCEEECCCCcCCc---------cC--HHHHhCCCCCCEEEee
Confidence 9998874321 1 0 113456777777776432110 00 1235567788888776
Q ss_pred eee
Q 021480 161 SYF 163 (312)
Q Consensus 161 ~~~ 163 (312)
++.
T Consensus 168 ~N~ 170 (229)
T 3e6j_A 168 GNP 170 (229)
T ss_dssp TSC
T ss_pred CCC
Confidence 654
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.20 E-value=1.4e-07 Score=72.13 Aligned_cols=129 Identities=15% Similarity=0.100 Sum_probs=86.8
Q ss_pred CCcceEEEeeceeeC--C-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEE
Q 021480 28 CQNLIHLELFNCLLK--P-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI 104 (312)
Q Consensus 28 ~~~L~~L~L~~~~l~--~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~ 104 (312)
.++|+.|++++|.+. . +..+..+++|+.|++++|.+++- ..+..++.|+.|++++|.....
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~------------- 79 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG------------- 79 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-------------
Confidence 378999999999887 3 55668999999999999988654 5678899999999988754220
Q ss_pred eecccceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcc
Q 021480 105 GGVFDDVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLN 184 (312)
Q Consensus 105 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~ 184 (312)
. +..+..+++|+.++++.+... ..+ ....+..+++++.|++.++.+..+.. .+......+++|+
T Consensus 80 ---~-~~~~~~l~~L~~L~ls~N~i~---------~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~--~~~~~~~~l~~L~ 143 (149)
T 2je0_A 80 ---L-EVLAEKCPNLTHLNLSGNKIK---------DLS-TIEPLKKLENLKSLDLFNCEVTNLND--YRENVFKLLPQLT 143 (149)
T ss_dssp ---T-HHHHHHCTTCCEEECTTSCCC---------SHH-HHGGGGGCTTCCEEECTTCGGGGSTT--HHHHHHHHCTTCC
T ss_pred ---H-HHHhhhCCCCCEEECCCCcCC---------ChH-HHHHHhhCCCCCEEeCcCCcccchHH--HHHHHHHHCCCcc
Confidence 1 112345788999988654311 111 11447789999999999887642211 0001112477888
Q ss_pred eEEE
Q 021480 185 YLSI 188 (312)
Q Consensus 185 ~L~l 188 (312)
.|.+
T Consensus 144 ~L~l 147 (149)
T 2je0_A 144 YLDG 147 (149)
T ss_dssp EETT
T ss_pred cccC
Confidence 7754
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.20 E-value=3.2e-07 Score=80.91 Aligned_cols=111 Identities=23% Similarity=0.142 Sum_probs=68.8
Q ss_pred ecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCC-CCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc
Q 021480 13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFK-GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF 89 (312)
Q Consensus 13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~-~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~ 89 (312)
+.......+|..+. +.++.|+|++|.+.. +..+. .+++|+.|+|+++.++.- ....+..++.|+.|+++++...
T Consensus 25 c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 25 CSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHLH 101 (361)
T ss_dssp CCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCC
T ss_pred eCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcCC
Confidence 33333346776653 457889999987764 33355 889999999999887542 1234678889999999887532
Q ss_pred eeEEE----eCCCcceEEEeec-cc---ceeeecCCcceEEEEeEE
Q 021480 90 THLNI----DAPNLQFFDIGGV-FD---DVTFENTFHLALVSIGLY 127 (312)
Q Consensus 90 ~~~~i----~~p~L~~L~~~~~-~~---~~~~~~~~~L~~l~l~~~ 127 (312)
.+.. ..++|+.|.+.++ +. ...+..+++|+.++++.+
T Consensus 102 -~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 102 -TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp -EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred -cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 1211 2356666666653 21 122455667777766543
No 118
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.20 E-value=2.9e-08 Score=87.98 Aligned_cols=170 Identities=15% Similarity=0.117 Sum_probs=94.9
Q ss_pred CcceEEEeeceeeCCC--CCC----C-CCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcce
Q 021480 29 QNLIHLELFNCLLKPP--STF----K-GFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQF 101 (312)
Q Consensus 29 ~~L~~L~L~~~~l~~~--~~~----~-~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~ 101 (312)
++|+.|+|++|.+.+. ..+ . ..++|+.|+|++|.+++..+..+...++.|+.|++++|.....
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~---------- 141 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE---------- 141 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH----------
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH----------
Confidence 4566677766665431 111 1 2356777777777666655555555556666666666532110
Q ss_pred EEEeecccce--ee-ecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCc
Q 021480 102 FDIGGVFDDV--TF-ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPR 178 (312)
Q Consensus 102 L~~~~~~~~~--~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~ 178 (312)
+...+ .+ ...++|+.++++.+.... .....+...+...++|++|+++.+.+...........+.
T Consensus 142 -----~~~~L~~~L~~~~~~L~~L~Ls~n~l~~-------~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~- 208 (372)
T 3un9_A 142 -----ACKDLRDLLLHDQCQITTLRLSNNPLTA-------AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD- 208 (372)
T ss_dssp -----HHHHHHHHHHSTTCCCCEEECCSSCCHH-------HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG-
T ss_pred -----HHHHHHHHHHhcCCccceeeCCCCCCCh-------HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh-
Confidence 00111 11 235778888886543210 012233445567888999999887653211101111122
Q ss_pred ccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480 179 PCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 179 ~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
..++|+.|.++.+.-...+...+...+..+|+|+.|++..+..
T Consensus 209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 2457888888655434444556777788899999999977653
No 119
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.19 E-value=5.4e-07 Score=72.16 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=18.1
Q ss_pred hhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEE
Q 021480 148 FVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIR 189 (312)
Q Consensus 148 l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~ 189 (312)
+.++++|+.|++..+.+..++. ..+ ..+++|++|.+.
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~~----~~~-~~l~~L~~L~L~ 134 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVPE----GAF-NDLSALSHLAIG 134 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCT----TTT-TTCTTCCEEECC
T ss_pred hCCCCCCCEEECCCCCCCeeCh----hhh-hcCccccEEEeC
Confidence 3455666666666655432211 111 135566666663
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.18 E-value=9.9e-07 Score=80.28 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=55.6
Q ss_pred cCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcc
Q 021480 21 VPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQ 100 (312)
Q Consensus 21 lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~ 100 (312)
+| .+..+++|+.|++++|.+...+. ..++|++|+++++.+++ ++ -+..++.|+.|++.+|.... +.-..++|+
T Consensus 146 lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~ 218 (454)
T 1jl5_A 146 LP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEE--LP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLE 218 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSS-CCCCCTTCC
T ss_pred Cc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCcCCc--Cc-cccCCCCCCEEECCCCcCCc-CCCCcCccc
Confidence 44 35556666666666665544222 12466666666665543 22 25677777777777664321 222235777
Q ss_pred eEEEeec-ccce-eeecCCcceEEEEeEE
Q 021480 101 FFDIGGV-FDDV-TFENTFHLALVSIGLY 127 (312)
Q Consensus 101 ~L~~~~~-~~~~-~~~~~~~L~~l~l~~~ 127 (312)
.|.+.++ +..+ .+..+++|+.++++.+
T Consensus 219 ~L~l~~n~l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 219 SIVAGNNILEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp EEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred EEECcCCcCCcccccCCCCCCCEEECCCC
Confidence 7777763 2221 2456777777777643
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.18 E-value=5.8e-07 Score=71.85 Aligned_cols=72 Identities=19% Similarity=0.164 Sum_probs=48.9
Q ss_pred ecCCcceecCCCcccCCcceEEEeeceeeCC-CC--CCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480 13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PS--TFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~--~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~ 87 (312)
++......+|..+.. +|+.|+++++.+.. ++ .+..+++|++|+|+++.+++- .+..+.+++.|++|+++++.
T Consensus 15 ~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 15 CTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp CTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred cCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc
Confidence 343334567776543 78888888887765 22 267888888888888887542 23346677888888887764
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.17 E-value=7.6e-07 Score=78.51 Aligned_cols=145 Identities=22% Similarity=0.114 Sum_probs=95.3
Q ss_pred CceEEEEEecCCcceecCCCcc--cCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 5 CVKEFILEIWKGQRYKVPSSLF--LCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~--~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
.++.|+|+... ...+|...+ .+++|+.|+|++|.+.. +..+..+++|+.|+|++|.++.- ....+..++.|+.
T Consensus 40 ~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 116 (361)
T 2xot_A 40 YTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEV 116 (361)
T ss_dssp TCSEEECCSSC--CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCE
T ss_pred CCCEEECCCCC--CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCE
Confidence 45666664433 346666654 78999999999998765 34688999999999999987642 2235678999999
Q ss_pred eeeeccCCceeEE----EeCCCcceEEEeec-ccce---ee---ecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhh
Q 021480 81 LTLMNFDGFTHLN----IDAPNLQFFDIGGV-FDDV---TF---ENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFV 149 (312)
Q Consensus 81 L~l~~~~~~~~~~----i~~p~L~~L~~~~~-~~~~---~~---~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (312)
|++.++.... +. -..++|+.|.+.++ +..+ .+ ..+++|+.++++.+.... .+ ...+.
T Consensus 117 L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------l~--~~~~~ 184 (361)
T 2xot_A 117 LLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK---------LP--LTDLQ 184 (361)
T ss_dssp EECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC---------CC--HHHHH
T ss_pred EECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc---------cC--HHHhh
Confidence 9999886432 11 13478999998874 2222 12 457889988887543210 01 12344
Q ss_pred cCCC--ccEEEEeeeeh
Q 021480 150 HLPH--IRRLEIQSYFL 164 (312)
Q Consensus 150 ~l~~--l~~L~l~~~~~ 164 (312)
.++. ++.|.+.++.+
T Consensus 185 ~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 185 KLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp HSCHHHHTTEECCSSCE
T ss_pred hccHhhcceEEecCCCc
Confidence 5555 37788877654
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.16 E-value=1.1e-06 Score=79.98 Aligned_cols=189 Identities=17% Similarity=0.115 Sum_probs=98.3
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeee
Q 021480 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLM 84 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~ 84 (312)
++++|+++.+.. ..+| .+..+++|+.|++++|.+...+.. .++|+.|++++|.++. ++. +..++.|++|++.
T Consensus 174 ~L~~L~L~~n~l--~~l~-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 174 SLEFIAAGNNQL--EELP-ELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVAGNNILEE--LPE-LQNLPFLTTIYAD 245 (454)
T ss_dssp TCCEEECCSSCC--SSCC-CCTTCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECC
T ss_pred cccEEECcCCcC--CcCc-cccCCCCCCEEECCCCcCCcCCCC--cCcccEEECcCCcCCc--ccc-cCCCCCCCEEECC
Confidence 566777654432 2456 577788888888888877653322 3578888888777652 332 5677788888887
Q ss_pred ccCCceeEEEeCCCcceEEEeec-ccceeeecCCcceEEEEeEEEeecC-Ccc--CCC--CcchhHHHHhhcC-CCccEE
Q 021480 85 NFDGFTHLNIDAPNLQFFDIGGV-FDDVTFENTFHLALVSIGLYVNVKN-DQA--MGP--GNSCKLLRFFVHL-PHIRRL 157 (312)
Q Consensus 85 ~~~~~~~~~i~~p~L~~L~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~-~~~--~~~--~~~~~~~~~l~~l-~~l~~L 157 (312)
+|.... +.-..++|+.|.+.++ +..+. ...++|+.++++.+....- ..+ ... .....+.. +..+ ++++.|
T Consensus 246 ~N~l~~-l~~~~~~L~~L~l~~N~l~~l~-~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~-i~~~~~~L~~L 322 (454)
T 1jl5_A 246 NNLLKT-LPDLPPSLEALNVRDNYLTDLP-ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LCDLPPSLEEL 322 (454)
T ss_dssp SSCCSS-CCSCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-ECCCCTTCCEE
T ss_pred CCcCCc-ccccccccCEEECCCCcccccC-cccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc-ccCCcCcCCEE
Confidence 764221 1112356666666653 22211 1235566665543221100 000 000 00000000 1122 367777
Q ss_pred EEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEEEeccC
Q 021480 158 EIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEMLARPE 221 (312)
Q Consensus 158 ~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~~~ 221 (312)
+++.+.+. .+|..+++|+.|.++.+.- . .++. .+++|+.|++..+..
T Consensus 323 ~Ls~N~l~---------~lp~~~~~L~~L~L~~N~l--~---~lp~---~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 323 NVSNNKLI---------ELPALPPRLERLIASFNHL--A---EVPE---LPQNLKQLHVEYNPL 369 (454)
T ss_dssp ECCSSCCS---------CCCCCCTTCCEEECCSSCC--S---CCCC---CCTTCCEEECCSSCC
T ss_pred ECCCCccc---------cccccCCcCCEEECCCCcc--c---cccc---hhhhccEEECCCCCC
Confidence 77665432 1333467888888743321 1 1333 468888888876643
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.13 E-value=4.2e-07 Score=71.55 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=42.6
Q ss_pred cccCCcceEEEeeceeeCCCCCCCCCc-ccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480 25 LFLCQNLIHLELFNCLLKPPSTFKGFR-NLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 25 l~~~~~L~~L~L~~~~l~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~ 87 (312)
...+.+|+.|++++|.+...+.+..+. +|+.|++++|.+++- ..+..++.|+.|++++|.
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR 75 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc
Confidence 456778888888888776655555544 888888888877642 345677888888887764
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.08 E-value=1.9e-06 Score=67.73 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=34.2
Q ss_pred eecCCCcccCCcceEEEeeceeeCC-C-CCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeecc
Q 021480 19 YKVPSSLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNF 86 (312)
Q Consensus 19 ~~lp~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~ 86 (312)
..+|..+. ++|+.|+++++.+.. + ..+..+++|++|+++++.++.- ....+..++.|+.|++.++
T Consensus 20 ~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp SSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred ccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCC
Confidence 34554433 466666666665543 2 2345666666666666655421 1122345555666555544
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.08 E-value=1.4e-06 Score=81.52 Aligned_cols=105 Identities=18% Similarity=0.101 Sum_probs=67.2
Q ss_pred cceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEEeCCCcceEEEeeccc
Q 021480 30 NLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFD 109 (312)
Q Consensus 30 ~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~~~~~ 109 (312)
.|+.|+|++|.+...+.+..+++|+.|+|++|.++ .++..++.++.|+.|++++|.... ++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~-----------------lp 502 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-----------------VD 502 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-----------------CG
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC-----------------Cc
Confidence 47788888887766445778888888888888776 345567778888888887764321 11
Q ss_pred ceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehh
Q 021480 110 DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLK 165 (312)
Q Consensus 110 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~ 165 (312)
.+..+++|+.++++.+..... ..+ ..++.+++|+.|+++++.+.
T Consensus 503 --~l~~l~~L~~L~Ls~N~l~~~-------~~p---~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 503 --GVANLPRLQELLLCNNRLQQS-------AAI---QPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp --GGTTCSSCCEEECCSSCCCSS-------STT---GGGGGCTTCCEEECTTSGGG
T ss_pred --ccCCCCCCcEEECCCCCCCCC-------CCc---HHHhcCCCCCEEEecCCcCC
Confidence 244567777777764322100 001 23556778888888777654
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.06 E-value=1.7e-06 Score=69.14 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=69.5
Q ss_pred EEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCc
Q 021480 11 LEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGF 89 (312)
Q Consensus 11 l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~ 89 (312)
+++.......+|..+. ++|+.|+++++.+.. |..+..+++|+.|+|+++.++.- ....+.+++.|++|+++++...
T Consensus 15 l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 15 VRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC
T ss_pred EEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCccC
Confidence 3444444456776653 578888988887765 45677888899999988887542 1234677888888888877432
Q ss_pred eeEEE----eCCCcceEEEeec-ccc---eeeecCCcceEEEEeE
Q 021480 90 THLNI----DAPNLQFFDIGGV-FDD---VTFENTFHLALVSIGL 126 (312)
Q Consensus 90 ~~~~i----~~p~L~~L~~~~~-~~~---~~~~~~~~L~~l~l~~ 126 (312)
. +.. ..++|+.|.+.++ +.. -.+..+++|+.++++.
T Consensus 92 ~-i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 92 C-IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp B-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred E-eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 1 110 2256666666653 111 1234566666666653
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.04 E-value=4.1e-07 Score=71.63 Aligned_cols=133 Identities=20% Similarity=0.163 Sum_probs=88.8
Q ss_pred CCceEEEEEecCCcceecCCCcccCC-cceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQ-NLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT 82 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~-~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 82 (312)
.++++|+++.... ..+|. +..+. +|+.|++++|.+.....+..+++|+.|++++|.+++- ...++..+|.|+.|+
T Consensus 19 ~~L~~L~l~~n~l--~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKI--PVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCC--CSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCC--chhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEE
Confidence 4567777654432 24554 45554 9999999999887666788999999999999988642 123457899999999
Q ss_pred eeccCCceeEEEeCCCcceEEEeecccce-eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEee
Q 021480 83 LMNFDGFTHLNIDAPNLQFFDIGGVFDDV-TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS 161 (312)
Q Consensus 83 l~~~~~~~~~~i~~p~L~~L~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 161 (312)
+++|.... +..+ .+..+++|+.++++.+..... .......+..+++++.|++..
T Consensus 95 L~~N~i~~-----------------~~~~~~l~~l~~L~~L~l~~N~i~~~--------~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 95 LTNNSLVE-----------------LGDLDPLASLKSLTYLCILRNPVTNK--------KHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CCSCCCCC-----------------GGGGGGGGGCTTCCEEECCSSGGGGS--------TTHHHHHHHHCTTCSEETTEE
T ss_pred CCCCcCCc-----------------chhhHhhhcCCCCCEEEecCCCCCCc--------HhHHHHHHHHCCccceeCCCc
Confidence 99875311 1111 245678888888865432110 001123467889999999887
Q ss_pred eehh
Q 021480 162 YFLK 165 (312)
Q Consensus 162 ~~~~ 165 (312)
+..+
T Consensus 150 n~~~ 153 (176)
T 1a9n_A 150 VKLK 153 (176)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 7653
No 129
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=3.7e-06 Score=65.71 Aligned_cols=86 Identities=9% Similarity=0.073 Sum_probs=63.2
Q ss_pred CCCceEEEEEecCCcceecCCCcccCCcceEEEeecee-eCC--CCCCCC----Ccccceeeeccee-eChHHHHHHHhC
Q 021480 3 RSCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCL-LKP--PSTFKG----FRNLKSLDLQHIT-LSQDVFENLISS 74 (312)
Q Consensus 3 ~~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~-l~~--~~~~~~----l~~L~~L~L~~~~-~~~~~l~~ll~~ 74 (312)
...+++|+++.+......+ ..+..|++|++|+|++|. +.+ ...++. +++|+.|+|++|. +++..+..+ +.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~ 137 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HH 137 (176)
T ss_dssp CCCEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GG
T ss_pred CceEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hc
Confidence 3457889987554321222 224579999999999995 654 222334 3589999999996 999988875 68
Q ss_pred CcccceeeeeccCCce
Q 021480 75 SPTLERLTLMNFDGFT 90 (312)
Q Consensus 75 cp~Le~L~l~~~~~~~ 90 (312)
||+|+.|++++|..+.
T Consensus 138 ~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVK 153 (176)
T ss_dssp CTTCCEEEEESCTTCC
T ss_pred CCCCCEEECCCCCCCC
Confidence 9999999999998764
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.92 E-value=5.6e-06 Score=72.56 Aligned_cols=199 Identities=16% Similarity=0.097 Sum_probs=104.7
Q ss_pred CCceEEEEEecCCcceecCCC-cccCCcceEEEeeceeeCC---CCCCCCCccccee-eecceeeChHHHHHHHhCCccc
Q 021480 4 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP---PSTFKGFRNLKSL-DLQHITLSQDVFENLISSSPTL 78 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~---~~~~~~l~~L~~L-~L~~~~~~~~~l~~ll~~cp~L 78 (312)
+++++|+|+.... ..+|.. +..+++|+.|+|++|.+.. +..|.++++|+.+ .+.++.++.- .+..+..++.|
T Consensus 30 ~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTC
T ss_pred CCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhcccc
Confidence 4688888866543 488875 5678999999999997532 3456788887764 4445555321 12356789999
Q ss_pred ceeeeeccCCcee---EEEeCCCcceEEEeec--ccce---eeecC-CcceEEEEeEEEeecCCc-cCC--------CCc
Q 021480 79 ERLTLMNFDGFTH---LNIDAPNLQFFDIGGV--FDDV---TFENT-FHLALVSIGLYVNVKNDQ-AMG--------PGN 140 (312)
Q Consensus 79 e~L~l~~~~~~~~---~~i~~p~L~~L~~~~~--~~~~---~~~~~-~~L~~l~l~~~~~~~~~~-~~~--------~~~ 140 (312)
+.|++.++..... ......++..+.+.+. ...+ .+..+ ..++.++++.+....-.. .+. ...
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence 9999998742210 0112234444544431 1111 11111 234444443221100000 000 000
Q ss_pred ---chhH-HHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHHHHhhhcCCCcceEEE
Q 021480 141 ---SCKL-LRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAALCLLRSSPNLQELEM 216 (312)
Q Consensus 141 ---~~~~-~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l~~~L~~~p~Le~L~l 216 (312)
...+ ...+.++++|+.|+++.+.+..+ |. ..|.+|++|.+.... ... .++. +...++|+.+.+
T Consensus 187 ~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l-----p~---~~~~~L~~L~~l~~~-~l~---~lP~-l~~l~~L~~l~l 253 (350)
T 4ay9_X 187 NNNLEELPNDVFHGASGPVILDISRTRIHSL-----PS---YGLENLKKLRARSTY-NLK---KLPT-LEKLVALMEASL 253 (350)
T ss_dssp CTTCCCCCTTTTTTEECCSEEECTTSCCCCC-----CS---SSCTTCCEEECTTCT-TCC---CCCC-TTTCCSCCEEEC
T ss_pred CCcccCCCHHHhccCcccchhhcCCCCcCcc-----Ch---hhhccchHhhhccCC-CcC---cCCC-chhCcChhhCcC
Confidence 0000 12355778888998887765322 21 237778877762221 111 2333 467788888877
Q ss_pred Ee
Q 021480 217 LA 218 (312)
Q Consensus 217 ~~ 218 (312)
..
T Consensus 254 ~~ 255 (350)
T 4ay9_X 254 TY 255 (350)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.88 E-value=5.2e-06 Score=66.26 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=72.7
Q ss_pred CceEEEEEecCCcceecCCC--cccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 5 CVKEFILEIWKGQRYKVPSS--LFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~--l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
++++|+++... ...+|.. +..+++|+.|+|++|.+.. +..+.++++|+.|+|+++.+++- ....+...+.|+.
T Consensus 30 ~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLKT 106 (192)
T ss_dssp TCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSSSTTCTTCCE
T ss_pred CCCEEECCCCc--CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc-CHHHhcCCCCCCE
Confidence 56777765443 2356653 6788999999999998865 45688999999999999988642 1234567899999
Q ss_pred eeeeccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEE
Q 021480 81 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLY 127 (312)
Q Consensus 81 L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~ 127 (312)
|+++++.... .....+..+++|+.++++.+
T Consensus 107 L~L~~N~l~~-----------------~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 107 LNLYDNQISC-----------------VMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp EECCSSCCCE-----------------ECTTSSTTCTTCCEEECTTC
T ss_pred EECCCCcCCe-----------------eCHHHhhcCCCCCEEEeCCC
Confidence 9998875422 11112446778888877644
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.83 E-value=1e-05 Score=63.24 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=65.9
Q ss_pred ecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce
Q 021480 13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT 90 (312)
Q Consensus 13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~ 90 (312)
++......+|..+. ++|+.|+|++|.+.. +..+.++++|+.|+|++|.+++- ....+..++.|+.|+++++....
T Consensus 16 ~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~ 92 (170)
T 3g39_A 16 CSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQLKS 92 (170)
T ss_dssp CTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCC
T ss_pred eCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCccCE
Confidence 34444457787664 789999999998865 44578999999999999987632 22345788999999998774321
Q ss_pred eEEEeCCCcceEEEeecccceeeecCCcceEEEEeEE
Q 021480 91 HLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLY 127 (312)
Q Consensus 91 ~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~ 127 (312)
+..-.+..+++|+.++++.+
T Consensus 93 -----------------~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 93 -----------------IPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp -----------------CCTTTTTTCTTCCEEECCSS
T ss_pred -----------------eCHHHhcCCCCCCEEEeCCC
Confidence 11112446777888877644
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.80 E-value=1.2e-05 Score=63.03 Aligned_cols=95 Identities=18% Similarity=0.129 Sum_probs=63.6
Q ss_pred ecCCcceecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCce
Q 021480 13 IWKGQRYKVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFT 90 (312)
Q Consensus 13 ~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~ 90 (312)
+.......+|..+. ++|+.|+|++|.+.. +..+.++++|+.|+|+++.+++- ....+..++.|+.|+++++....
T Consensus 19 ~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~ 95 (174)
T 2r9u_A 19 CQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKS 95 (174)
T ss_dssp CCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCC
T ss_pred eCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccce
Confidence 34333457777664 789999999998765 34578899999999999987641 12245678889998888764321
Q ss_pred eEEEeCCCcceEEEeecccceeeecCCcceEEEEeEE
Q 021480 91 HLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLY 127 (312)
Q Consensus 91 ~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~ 127 (312)
+....+..+++|+.++++.+
T Consensus 96 -----------------l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 96 -----------------IPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp -----------------CCTTTTTTCTTCSEEECCSS
T ss_pred -----------------eCHHHhccccCCCEEEeCCC
Confidence 11112445677777777643
No 134
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.78 E-value=1.3e-05 Score=74.83 Aligned_cols=159 Identities=12% Similarity=0.044 Sum_probs=100.4
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 83 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 83 (312)
.+++.|+++.+.. ..+| ..+++|+.|+|++|.+...+.+.. +|+.|+|++|.+++ ++. .++.|+.|++
T Consensus 80 ~~L~~L~Ls~N~l--~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNAL--ISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTM--LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCC--SCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSC--CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCC--cccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCC--CCC---cCccccEEeC
Confidence 3577777754433 3677 346899999999998876444443 99999999999865 333 6899999999
Q ss_pred eccCCceeEEEeCCCcceEEEeec-cccee-eecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEee
Q 021480 84 MNFDGFTHLNIDAPNLQFFDIGGV-FDDVT-FENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQS 161 (312)
Q Consensus 84 ~~~~~~~~~~i~~p~L~~L~~~~~-~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~ 161 (312)
++|.... +.-..++|+.|.++++ +..+. +. ++|+.++++.+... ..+ ... ..+....+.++.|++++
T Consensus 148 s~N~l~~-lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~--~lp----~~~--~~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 148 DNNQLTM-LPELPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLE--SLP----AVP--VRNHHSEETEIFFRCRE 216 (571)
T ss_dssp CSSCCSC-CCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCS--SCC----CCC----------CCEEEECCS
T ss_pred CCCccCc-CCCcCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCC--chh----hHH--HhhhcccccceEEecCC
Confidence 9885322 2225579999999884 22221 32 88999998754322 111 000 01122234459999998
Q ss_pred eehhhhcccCCCCCCCcccCCcceEEEEEE
Q 021480 162 YFLKYLAIGNVPSRLPRPCVDLNYLSIRIN 191 (312)
Q Consensus 162 ~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~ 191 (312)
+.+.. .|..+. .+++|+.|.++.+
T Consensus 217 N~l~~-----lp~~l~-~l~~L~~L~L~~N 240 (571)
T 3cvr_A 217 NRITH-----IPENIL-SLDPTCTIILEDN 240 (571)
T ss_dssp SCCCC-----CCGGGG-GSCTTEEEECCSS
T ss_pred Cccee-----cCHHHh-cCCCCCEEEeeCC
Confidence 86642 333333 3778888888544
No 135
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.73 E-value=1.5e-05 Score=70.15 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=70.7
Q ss_pred cCCcceEEEeecee-eCCCCCCCCCcccceeeecceeeChHHHHHHH-hCCcccceeeeeccCCceeEEEeCCCcceEEE
Q 021480 27 LCQNLIHLELFNCL-LKPPSTFKGFRNLKSLDLQHITLSQDVFENLI-SSSPTLERLTLMNFDGFTHLNIDAPNLQFFDI 104 (312)
Q Consensus 27 ~~~~L~~L~L~~~~-l~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll-~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~ 104 (312)
.+++|+.|.|++|. +..++ + .+++|++|.|..+.++.+.+..+. ..+|+|+.|+|..+..... ..+.++
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~---~~~~~~---- 240 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG---FDGDMN---- 240 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGT---CCSCGG----
T ss_pred cCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccc---cchhHH----
Confidence 34555555555542 22111 2 255566666655555554444433 2455666655532110000 000000
Q ss_pred eecccc-eeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHh--hcCCCccEEEEeeeehhhhcccCCCCCCCcccC
Q 021480 105 GGVFDD-VTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFF--VHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCV 181 (312)
Q Consensus 105 ~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l--~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~ 181 (312)
.+.. +....+|+|+.+.+..+... + .....+. +.+++|++|+++.+.+.-......+..++ .++
T Consensus 241 --~l~~~l~~~~~p~Lr~L~L~~~~i~---------~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~-~l~ 307 (362)
T 2ra8_A 241 --VFRPLFSKDRFPNLKWLGIVDAEEQ---------N-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD-KIK 307 (362)
T ss_dssp --GTGGGSCTTTCTTCCEEEEESCTTH---------H-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH-HHT
T ss_pred --HHHHHHhcCCCCCcCEEeCCCCCCc---------h-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc-cCC
Confidence 0011 11124789999988643211 1 0011122 35789999999877553210111122222 478
Q ss_pred CcceEEEEEEcCChhhHHHHH
Q 021480 182 DLNYLSIRINFNDLEENLAAL 202 (312)
Q Consensus 182 ~L~~L~l~~~~~~~~~~~~l~ 202 (312)
+|+.|.++.+.-+...+..+.
T Consensus 308 ~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 308 HLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp TCSEEECCSBBCCHHHHHHHH
T ss_pred cceEEECCCCcCCHHHHHHHH
Confidence 999999965544433333333
No 136
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.72 E-value=1.8e-05 Score=61.42 Aligned_cols=82 Identities=21% Similarity=0.068 Sum_probs=61.5
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCC-CCCCcccceeeecceeeChHHHHHHHhCCccccee
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PST-FKGFRNLKSLDLQHITLSQDVFENLISSSPTLERL 81 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~-~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L 81 (312)
.++++|+++.+... .+ ..+..+++|+.|++++|.+.. ++. +..+++|+.|++++|.+++-.....+..+|.|+.|
T Consensus 49 ~~L~~L~l~~n~l~--~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 49 VNLEFLSLINVGLI--SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGCCEEEEESSCCC--CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred CCCCEEeCcCCCCC--Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 45778887655432 33 667789999999999998876 444 34599999999999998653222457889999999
Q ss_pred eeeccCC
Q 021480 82 TLMNFDG 88 (312)
Q Consensus 82 ~l~~~~~ 88 (312)
++.+|..
T Consensus 126 ~l~~N~l 132 (168)
T 2ell_A 126 DLFNCEV 132 (168)
T ss_dssp ECCSSGG
T ss_pred EeeCCcC
Confidence 9988753
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.72 E-value=1.8e-05 Score=62.03 Aligned_cols=104 Identities=19% Similarity=0.162 Sum_probs=71.8
Q ss_pred CCceEEEEEecCCcceecCCC-cccCCcceEEEeeceeeCC-C-CCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKVPSS-LFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
.++++|+++.... ..+|.. +..+++|+.|++++|.+.. + ..+..+++|+.|+++++.+++- ....+..++.|+.
T Consensus 28 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCE
Confidence 3567777654432 356665 4578999999999998875 2 3368999999999999988642 2234678899999
Q ss_pred eeeeccCCceeEEEeCCCcceEEEeecccceeeecCCcceEEEEeEE
Q 021480 81 LTLMNFDGFTHLNIDAPNLQFFDIGGVFDDVTFENTFHLALVSIGLY 127 (312)
Q Consensus 81 L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~~~~~~~~L~~l~l~~~ 127 (312)
|++.++.... +....+..+++|+.++++.+
T Consensus 105 L~l~~N~l~~-----------------~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 105 LALDTNQLKS-----------------VPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp EECCSSCCSC-----------------CCTTTTTTCTTCCEEECCSS
T ss_pred EECcCCcceE-----------------eCHHHhcCCcccCEEEecCC
Confidence 9998774321 11112345677888877644
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.68 E-value=8e-06 Score=65.41 Aligned_cols=98 Identities=19% Similarity=0.042 Sum_probs=72.8
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCCCC-CCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKPPS-TFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT 82 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 82 (312)
.++++|+++.+.. ..+| .+..+++|+.|++++|.+...+ .+..+++|+.|++++|.+++ ++ -+..++.|+.|+
T Consensus 48 ~~L~~L~ls~n~l--~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 48 KACKHLALSTNNI--EKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTCSEEECSEEEE--SCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEEE
T ss_pred CCCCEEECCCCCC--cccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEEE
Confidence 3677888765443 3467 7788999999999999887633 34567999999999999875 44 467899999999
Q ss_pred eeccCCce--e--EEEeCCCcceEEEeec
Q 021480 83 LMNFDGFT--H--LNIDAPNLQFFDIGGV 107 (312)
Q Consensus 83 l~~~~~~~--~--~~i~~p~L~~L~~~~~ 107 (312)
+.+|.... . .--..++|+.|.+.++
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 99875321 1 0114578999998874
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.68 E-value=1.6e-05 Score=74.37 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=73.2
Q ss_pred CceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeee
Q 021480 5 CVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTL 83 (312)
Q Consensus 5 ~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l 83 (312)
.++.|+++.+ ....+|. +..+++|+.|+|++|.+.. |..++++++|+.|+|++|.+++ ++ .++.++.|+.|++
T Consensus 442 ~L~~L~Ls~n--~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHK--DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTS--CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCC--CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence 3556666433 3346776 8889999999999998875 5678899999999999999875 44 6789999999999
Q ss_pred eccCCcee----EEEeCCCcceEEEeec
Q 021480 84 MNFDGFTH----LNIDAPNLQFFDIGGV 107 (312)
Q Consensus 84 ~~~~~~~~----~~i~~p~L~~L~~~~~ 107 (312)
++|..... .--..++|+.|.++++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 98853221 0113578898988874
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.66 E-value=5.6e-06 Score=79.73 Aligned_cols=102 Identities=19% Similarity=0.120 Sum_probs=61.3
Q ss_pred CCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEE---EeCC
Q 021480 22 PSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLN---IDAP 97 (312)
Q Consensus 22 p~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~---i~~p 97 (312)
|..+..++.|+.|+|++|.+.. +..+..+++|+.|+|++|.++ .++..+..++.|+.|+|++|... .+. -..+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 4455667888888888887654 445567888888888888776 34455677888888888877532 111 0224
Q ss_pred CcceEEEeec-ccce--eeecCCcceEEEEeE
Q 021480 98 NLQFFDIGGV-FDDV--TFENTFHLALVSIGL 126 (312)
Q Consensus 98 ~L~~L~~~~~-~~~~--~~~~~~~L~~l~l~~ 126 (312)
+|+.|.+.++ +..+ .+..+++|+.++++.
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 5666666553 2111 244566666666653
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.63 E-value=3.5e-05 Score=60.06 Aligned_cols=81 Identities=21% Similarity=0.201 Sum_probs=60.6
Q ss_pred CCceEEEEEecCCcceec-CCCcccCCcceEEEeeceeeCC-C-CCCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKP-P-STFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
++++.|+++... ...+ |..+..+++|+.|+|++|.+.. + ..+..+++|+.|+|++|.++.- ....+..++.|+.
T Consensus 30 ~~l~~L~L~~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~ 106 (170)
T 3g39_A 30 TTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTH 106 (170)
T ss_dssp TTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred CCCcEEEcCCCc--CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCE
Confidence 456777765443 2355 4456789999999999998876 3 3468999999999999988642 1234678899999
Q ss_pred eeeeccC
Q 021480 81 LTLMNFD 87 (312)
Q Consensus 81 L~l~~~~ 87 (312)
|++.++.
T Consensus 107 L~L~~N~ 113 (170)
T 3g39_A 107 IWLLNNP 113 (170)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9998774
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.59 E-value=4.4e-05 Score=59.81 Aligned_cols=81 Identities=21% Similarity=0.188 Sum_probs=60.8
Q ss_pred CCceEEEEEecCCcceec-CCCcccCCcceEEEeeceeeCC-CC-CCCCCcccceeeecceeeChHHHHHHHhCCcccce
Q 021480 4 SCVKEFILEIWKGQRYKV-PSSLFLCQNLIHLELFNCLLKP-PS-TFKGFRNLKSLDLQHITLSQDVFENLISSSPTLER 80 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~l-p~~l~~~~~L~~L~L~~~~l~~-~~-~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~ 80 (312)
.++++|+++.... ..+ |..+..+++|+.|+|++|.+.. ++ .+..+++|+.|+|++|.++.- ....+..++.|+.
T Consensus 33 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~ 109 (174)
T 2r9u_A 33 TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTH 109 (174)
T ss_dssp TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSE
T ss_pred CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCCE
Confidence 4567777754432 355 4456789999999999998876 33 368899999999999988631 1234678999999
Q ss_pred eeeeccC
Q 021480 81 LTLMNFD 87 (312)
Q Consensus 81 L~l~~~~ 87 (312)
|++.++.
T Consensus 110 L~L~~N~ 116 (174)
T 2r9u_A 110 IYLYNNP 116 (174)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9998774
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.58 E-value=1.3e-06 Score=77.28 Aligned_cols=139 Identities=16% Similarity=0.069 Sum_probs=79.9
Q ss_pred CCceEEEEEecCCc---ceecCCCcc-cCCcceEEEeeceeeCC--CCCC-CCCcccceeeecceeeChHHHH---HHH-
Q 021480 4 SCVKEFILEIWKGQ---RYKVPSSLF-LCQNLIHLELFNCLLKP--PSTF-KGFRNLKSLDLQHITLSQDVFE---NLI- 72 (312)
Q Consensus 4 ~~v~eL~l~~~~~~---~~~lp~~l~-~~~~L~~L~L~~~~l~~--~~~~-~~l~~L~~L~L~~~~~~~~~l~---~ll- 72 (312)
+++++|+++.+... ...+...+. .+++|+.|+|++|.+.+ ...+ ..+++|+.|+|++|.+++.... ..+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 35677776533211 112333232 34799999999998864 2222 3578999999999999875443 334
Q ss_pred hCCcccceeeeeccCCceeEEEeCCCcceEEEeecccce--eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhc
Q 021480 73 SSSPTLERLTLMNFDGFTHLNIDAPNLQFFDIGGVFDDV--TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVH 150 (312)
Q Consensus 73 ~~cp~Le~L~l~~~~~~~~~~i~~p~L~~L~~~~~~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (312)
..++.|++|++.+|..... +...+ .+...++|+.++++.+...+ .....+...+..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~---------------~~~~l~~~L~~~~~L~~L~Ls~N~l~~-------~g~~~L~~~L~~ 209 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAA---------------GVAVLMEGLAGNTSVTHLSLLHTGLGD-------EGLELLAAQLDR 209 (372)
T ss_dssp STTCCCCEEECCSSCCHHH---------------HHHHHHHHHHTCSSCCEEECTTSSCHH-------HHHHHHHHHGGG
T ss_pred hcCCccceeeCCCCCCChH---------------HHHHHHHHHhcCCCcCEEeCCCCCCCc-------HHHHHHHHHHhc
Confidence 4688999999998853210 01111 12345666776665332110 011123344555
Q ss_pred CCCccEEEEeeeeh
Q 021480 151 LPHIRRLEIQSYFL 164 (312)
Q Consensus 151 l~~l~~L~l~~~~~ 164 (312)
.++|+.|+++.+.+
T Consensus 210 ~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 210 NRQLQELNVAYNGA 223 (372)
T ss_dssp CSCCCEEECCSSCC
T ss_pred CCCcCeEECCCCCC
Confidence 66777777776654
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.34 E-value=6.6e-05 Score=65.05 Aligned_cols=82 Identities=15% Similarity=0.099 Sum_probs=46.1
Q ss_pred CCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeeehhhhcccCCCCCCCcccCCcc-eEEEEEEcCC
Q 021480 116 TFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYFLKYLAIGNVPSRLPRPCVDLN-YLSIRINFND 194 (312)
Q Consensus 116 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~~~~l~~~~~~~~l~~~f~~L~-~L~l~~~~~~ 194 (312)
+++|+.+++..+.-.. .. ...+.++++|+.+++..+ ++.+.. .....+.+|+ .+.+....
T Consensus 225 ~~~L~~l~L~~n~i~~-------I~----~~aF~~~~~L~~l~l~~n-i~~I~~-----~aF~~~~~L~~~l~l~~~l-- 285 (329)
T 3sb4_A 225 MPNLVSLDISKTNATT-------IP----DFTFAQKKYLLKIKLPHN-LKTIGQ-----RVFSNCGRLAGTLELPASV-- 285 (329)
T ss_dssp CTTCCEEECTTBCCCE-------EC----TTTTTTCTTCCEEECCTT-CCEECT-----TTTTTCTTCCEEEEECTTC--
T ss_pred cCCCeEEECCCCCcce-------ec----HhhhhCCCCCCEEECCcc-cceehH-----HHhhCChhccEEEEEcccc--
Confidence 7788888875321100 00 123567899999999765 332211 1112355666 66663211
Q ss_pred hhhHHHH-HHhhhcCCCcceEEEEecc
Q 021480 195 LEENLAA-LCLLRSSPNLQELEMLARP 220 (312)
Q Consensus 195 ~~~~~~l-~~~L~~~p~Le~L~l~~~~ 220 (312)
. .+ ...+.+|++|+.+.+....
T Consensus 286 -~---~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 286 -T---AIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp -C---EECTTTTTTCTTEEEEEECSSC
T ss_pred -e---EEchhhhhCCccCCEEEeCCCc
Confidence 1 12 2356899999999986543
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.29 E-value=3.6e-05 Score=74.16 Aligned_cols=98 Identities=24% Similarity=0.294 Sum_probs=64.8
Q ss_pred CCceEEEEEecCCcceecCCCcccCCcceEEEeeceeeCC-CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceee
Q 021480 4 SCVKEFILEIWKGQRYKVPSSLFLCQNLIHLELFNCLLKP-PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLT 82 (312)
Q Consensus 4 ~~v~eL~l~~~~~~~~~lp~~l~~~~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~ 82 (312)
..++.|+|+.. ....+|..++.+++|+.|+|++|.+.. |..+..+++|+.|+|++|.++ .++..+..++.|++|+
T Consensus 224 ~~L~~L~Ls~n--~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 224 QLWHALDLSNL--QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCEEECTTS--CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEE
T ss_pred CCCcEEECCCC--CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEE
Confidence 34556665333 334777777888888888888887764 455777888888888888776 3455567788888888
Q ss_pred eeccCCceeEE---EeCCCcceEEEee
Q 021480 83 LMNFDGFTHLN---IDAPNLQFFDIGG 106 (312)
Q Consensus 83 l~~~~~~~~~~---i~~p~L~~L~~~~ 106 (312)
|.+|... .+. -..++|+.|.+.+
T Consensus 300 L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 300 FFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 8877421 111 1235677777665
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=0.00029 Score=60.90 Aligned_cols=164 Identities=21% Similarity=0.209 Sum_probs=93.2
Q ss_pred CCcceEEEeeceeeC--CCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeec-----------------cCC
Q 021480 28 CQNLIHLELFNCLLK--PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMN-----------------FDG 88 (312)
Q Consensus 28 ~~~L~~L~L~~~~l~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~-----------------~~~ 88 (312)
|++|+.|.|.. .+. +...|.+|++|+.+.+..+.+..- -...+..|..+..+.... |..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i-~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNL-LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEE-CTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcccc-chhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 79999999988 443 245688999999999988753210 012334565555554432 111
Q ss_pred ce--------------------------eEEE--------------eCCCcceEEEeec-cc---ceeeecCCcceEEEE
Q 021480 89 FT--------------------------HLNI--------------DAPNLQFFDIGGV-FD---DVTFENTFHLALVSI 124 (312)
Q Consensus 89 ~~--------------------------~~~i--------------~~p~L~~L~~~~~-~~---~~~~~~~~~L~~l~l 124 (312)
+. .+.+ .+++|+++.+.++ +. ...+.++++|+++++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 11 0111 2678999998873 33 334678999999988
Q ss_pred eEEEeecCCccCCCCcchhHHHHhhcCCCcc-EEEEeeeehhhhcccCCCCCCCcccCCcceEEEEEEcCChhhHHHH-H
Q 021480 125 GLYVNVKNDQAMGPGNSCKLLRFFVHLPHIR-RLEIQSYFLKYLAIGNVPSRLPRPCVDLNYLSIRINFNDLEENLAA-L 202 (312)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~-~L~l~~~~~~~l~~~~~~~~l~~~f~~L~~L~l~~~~~~~~~~~~l-~ 202 (312)
... ... .. ...+.++++|+ .+.+.. .+..+.. .. ...+.+|+.|.+..+ ... .+ .
T Consensus 258 ~~n--i~~------I~----~~aF~~~~~L~~~l~l~~-~l~~I~~----~a-F~~c~~L~~l~l~~n--~i~---~I~~ 314 (329)
T 3sb4_A 258 PHN--LKT------IG----QRVFSNCGRLAGTLELPA-SVTAIEF----GA-FMGCDNLRYVLATGD--KIT---TLGD 314 (329)
T ss_dssp CTT--CCE------EC----TTTTTTCTTCCEEEEECT-TCCEECT----TT-TTTCTTEEEEEECSS--CCC---EECT
T ss_pred Ccc--cce------eh----HHHhhCChhccEEEEEcc-cceEEch----hh-hhCCccCCEEEeCCC--ccC---ccch
Confidence 532 100 01 12356788999 999975 3322211 11 123566777766211 111 12 2
Q ss_pred HhhhcCCCcceEEE
Q 021480 203 CLLRSSPNLQELEM 216 (312)
Q Consensus 203 ~~L~~~p~Le~L~l 216 (312)
..+.+|++|+.+..
T Consensus 315 ~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 315 ELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTCTTCCCCEEEC
T ss_pred hhhcCCcchhhhcc
Confidence 35688999998863
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.21 E-value=5.3e-05 Score=59.98 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=38.0
Q ss_pred cCCcceEEEeece-eeCC------CCCCCCCcccceeeecceeeChHH---HHHHHhCCcccceeeeeccC
Q 021480 27 LCQNLIHLELFNC-LLKP------PSTFKGFRNLKSLDLQHITLSQDV---FENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 27 ~~~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~l~~~~ 87 (312)
.+++|++|+|++| .+.+ ...+...++|++|+|++|.+.++. +...+..++.|++|+|.+|.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 4577777777777 6543 112344567777777777776542 44455566777777776664
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.21 E-value=0.00013 Score=63.62 Aligned_cols=74 Identities=20% Similarity=0.173 Sum_probs=57.9
Q ss_pred EecCC-cceecCCCcccCCcceEEEeec-eeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480 12 EIWKG-QRYKVPSSLFLCQNLIHLELFN-CLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 12 ~~~~~-~~~~lp~~l~~~~~L~~L~L~~-~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~ 87 (312)
++... ....+|. +..+++|+.|+|++ |.+.. +..+.++++|+.|+|++|.+++- .+..+..++.|+.|+|+++.
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCc
Confidence 44444 4467898 88899999999996 87765 34588999999999999988652 23457889999999999875
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.80 E-value=0.00017 Score=57.06 Aligned_cols=39 Identities=13% Similarity=0.049 Sum_probs=23.0
Q ss_pred CCcceEEE--EEEcCChhhHHHHHHhhhcCCCcceEEEEec
Q 021480 181 VDLNYLSI--RINFNDLEENLAALCLLRSSPNLQELEMLAR 219 (312)
Q Consensus 181 ~~L~~L~l--~~~~~~~~~~~~l~~~L~~~p~Le~L~l~~~ 219 (312)
.+|++|.+ ..+.-...+...+...++.++.|+.|++..+
T Consensus 121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 35666666 3232233444556677777788888877554
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.68 E-value=0.00055 Score=57.29 Aligned_cols=60 Identities=25% Similarity=0.200 Sum_probs=36.1
Q ss_pred cCCcceEEEeeceeeCCCCC----CCCCcccceeeecceeeChH-HHHHHHhCCcccceeeeeccCC
Q 021480 27 LCQNLIHLELFNCLLKPPST----FKGFRNLKSLDLQHITLSQD-VFENLISSSPTLERLTLMNFDG 88 (312)
Q Consensus 27 ~~~~L~~L~L~~~~l~~~~~----~~~l~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~l~~~~~ 88 (312)
.+++|+.|+|++|.+..... +..+++|+.|+|++|.+.+- .+..+ ... .|++|++.++.-
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTT
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcC
Confidence 35677777777776655222 23677777777777776542 22222 223 677777776653
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.58 E-value=0.0012 Score=58.71 Aligned_cols=34 Identities=18% Similarity=0.100 Sum_probs=18.6
Q ss_pred CcceEEEeece-eeCCCCCCCCCcccceeeeccee
Q 021480 29 QNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHIT 62 (312)
Q Consensus 29 ~~L~~L~L~~~-~l~~~~~~~~l~~L~~L~L~~~~ 62 (312)
.+|+.+.+... .--....|.+|++|+.+.+..+.
T Consensus 157 ~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~ 191 (401)
T 4fdw_A 157 STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTK 191 (401)
T ss_dssp CCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSC
T ss_pred CCceEEEeCCCccEehHHHhhCcccCCeeecCCCc
Confidence 35666666542 11123456667777777776543
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.57 E-value=0.00088 Score=58.22 Aligned_cols=80 Identities=19% Similarity=0.132 Sum_probs=57.9
Q ss_pred CCceEEEEEe-cCCcceecCC-CcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceeeChHHHHHHHhCCcccc
Q 021480 4 SCVKEFILEI-WKGQRYKVPS-SLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLE 79 (312)
Q Consensus 4 ~~v~eL~l~~-~~~~~~~lp~-~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le 79 (312)
.++++|+|+. .. ...+|+ .+..+++|+.|+|++|.+.. +..|.++++|+.|+|++|.++.- ....+...+ |+
T Consensus 31 ~~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~-L~ 106 (347)
T 2ifg_A 31 ENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS-LQ 106 (347)
T ss_dssp SCCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-CC
T ss_pred CCeeEEEccCCCC--CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-ce
Confidence 3577888753 33 246664 57789999999999998865 44578999999999999998641 112333444 99
Q ss_pred eeeeeccC
Q 021480 80 RLTLMNFD 87 (312)
Q Consensus 80 ~L~l~~~~ 87 (312)
.|++.++.
T Consensus 107 ~l~l~~N~ 114 (347)
T 2ifg_A 107 ELVLSGNP 114 (347)
T ss_dssp EEECCSSC
T ss_pred EEEeeCCC
Confidence 99998764
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.87 E-value=0.0071 Score=53.79 Aligned_cols=92 Identities=11% Similarity=0.055 Sum_probs=49.7
Q ss_pred CcceEEEeece-eeCCCCCCCCCcccceeeecce--eeChHHHHHHHhCCcccceeeeeccCCc--eeEEEeCCCcceEE
Q 021480 29 QNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHI--TLSQDVFENLISSSPTLERLTLMNFDGF--THLNIDAPNLQFFD 103 (312)
Q Consensus 29 ~~L~~L~L~~~-~l~~~~~~~~l~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~l~~~~~~--~~~~i~~p~L~~L~ 103 (312)
.+|+.+.+... .--....|.++ +|+.+.+... .+... .+.+|++|+.+++..+... ..-.+...+|+.+.
T Consensus 135 ~~L~~i~l~~~i~~I~~~aF~~~-~L~~i~lp~~l~~I~~~----aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~ 209 (401)
T 4fdw_A 135 SQIAKVVLNEGLKSIGDMAFFNS-TVQEIVFPSTLEQLKED----IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVL 209 (401)
T ss_dssp CCCSEEECCTTCCEECTTTTTTC-CCCEEECCTTCCEECSS----TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEE
T ss_pred CCccEEEeCCCccEECHHhcCCC-CceEEEeCCCccEehHH----HhhCcccCCeeecCCCcceEechhhEeecccCEEE
Confidence 36888887765 11123445553 6888887652 13222 4678899999888754211 00001134566665
Q ss_pred Eeeccc---ceeeecCCcceEEEEe
Q 021480 104 IGGVFD---DVTFENTFHLALVSIG 125 (312)
Q Consensus 104 ~~~~~~---~~~~~~~~~L~~l~l~ 125 (312)
+...+. ...+.++++|+.+.+.
T Consensus 210 lp~~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 210 LPVTLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCTTCCEECTTTTTTCTTCCCEECC
T ss_pred eCCchheehhhHhhCCCCCCEEecC
Confidence 554322 2234566677776663
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.26 E-value=0.0059 Score=51.00 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=41.5
Q ss_pred CCCcccceeeecceeeCh-HHHHHHHhCCcccceeeeeccCCce--eEE-EeCCCcceEEEeec
Q 021480 48 KGFRNLKSLDLQHITLSQ-DVFENLISSSPTLERLTLMNFDGFT--HLN-IDAPNLQFFDIGGV 107 (312)
Q Consensus 48 ~~l~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~l~~~~~~~--~~~-i~~p~L~~L~~~~~ 107 (312)
..+++|++|+|++|.+++ ..++.++..+|+|+.|+|+++.... .+. +...+|+.|.+.|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCC
Confidence 468999999999999865 2355677889999999998874221 110 01126777777764
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.14 E-value=0.3 Score=35.70 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=30.2
Q ss_pred ecCCCcccCCcceEEEeeceeeCC--CCCCCCCcccceeeecceee
Q 021480 20 KVPSSLFLCQNLIHLELFNCLLKP--PSTFKGFRNLKSLDLQHITL 63 (312)
Q Consensus 20 ~lp~~l~~~~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~L~~~~~ 63 (312)
.+|..+. ++|+.|+|++|.+.. +..|..+++|++|+|.+|.+
T Consensus 24 ~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 6665542 468888888887765 23467788888888888765
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.61 E-value=0.9 Score=39.80 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=23.0
Q ss_pred eeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeeee
Q 021480 112 TFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSYF 163 (312)
Q Consensus 112 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~~ 163 (312)
.+.++.+|+.+.+-.. . ..... .-+.++++|+.+++....
T Consensus 329 aF~~C~~L~~i~ip~s--v------~~I~~----~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS--V------TKIPE----SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TTTTCTTCCEEEECTT--C------CBCCG----GGGTTCTTCCEEEESSCH
T ss_pred HhhCCCCCCEEEECcc--c------CEEhH----hHhhCCCCCCEEEECCce
Confidence 4567788888877311 0 00011 225577888888887654
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=85.83 E-value=1.1 Score=39.20 Aligned_cols=93 Identities=15% Similarity=0.256 Sum_probs=54.7
Q ss_pred ccCCcceEEEeeceeeCCCCCCCCCcccceeeecce--eeChHHHHHHHhCCcccceeeeeccCCceeEEE----eCCCc
Q 021480 26 FLCQNLIHLELFNCLLKPPSTFKGFRNLKSLDLQHI--TLSQDVFENLISSSPTLERLTLMNFDGFTHLNI----DAPNL 99 (312)
Q Consensus 26 ~~~~~L~~L~L~~~~l~~~~~~~~l~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i----~~p~L 99 (312)
..|..++.+......+.. ..+.++.+|+.+.+... .+... .+.+|+.|+.+++... +..+.- .+.+|
T Consensus 273 ~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 273 YNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKLLDSVKFIGEE----AFESCTSLVSIDLPYL--VEEIGKRSFRGCTSL 345 (394)
T ss_dssp TTCTTCCEEEECSSEECT-TTTTTCTTCCEEEECTTCCEECTT----TTTTCTTCCEECCCTT--CCEECTTTTTTCTTC
T ss_pred ccccccceeccCceeecc-ccccccccccccccccccceechh----hhcCCCCCCEEEeCCc--ccEEhHHhccCCCCC
Confidence 356777777666554443 34667788888877442 13222 4677888888887532 211111 23566
Q ss_pred ceEEEeeccc---ceeeecCCcceEEEEe
Q 021480 100 QFFDIGGVFD---DVTFENTFHLALVSIG 125 (312)
Q Consensus 100 ~~L~~~~~~~---~~~~~~~~~L~~l~l~ 125 (312)
+++.+...+. ...+.++++|+++++.
T Consensus 346 ~~i~lp~~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 346 SNINFPLSLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CEECCCTTCCEECTTTBTTCTTCCEEEEE
T ss_pred CEEEECccccEehHHHhhCCCCCCEEEEC
Confidence 6666554332 2346788999998874
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.53 E-value=0.39 Score=37.89 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=43.4
Q ss_pred cCCcceEEEeece-eeCCC------CCCCCCcccceeeecceeeChH---HHHHHHhCCcccceeeeeccC
Q 021480 27 LCQNLIHLELFNC-LLKPP------STFKGFRNLKSLDLQHITLSQD---VFENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 27 ~~~~L~~L~L~~~-~l~~~------~~~~~l~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~l~~~~ 87 (312)
.-++|+.|+|+++ .+.+. ..+..-..|+.|+|++|.+.+. .+...+..-+.|++|+|.++.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 3478889998875 55431 1234456789999999888754 466667777889999998764
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=79.27 E-value=0.59 Score=36.83 Aligned_cols=59 Identities=15% Similarity=0.321 Sum_probs=40.2
Q ss_pred CCCcccceeeecce-eeChH---HHHHHHhCCcccceeeeeccCCce--------eEEEeCCCcceEEEeec
Q 021480 48 KGFRNLKSLDLQHI-TLSQD---VFENLISSSPTLERLTLMNFDGFT--------HLNIDAPNLQFFDIGGV 107 (312)
Q Consensus 48 ~~l~~L~~L~L~~~-~~~~~---~l~~ll~~cp~Le~L~l~~~~~~~--------~~~i~~p~L~~L~~~~~ 107 (312)
..-+.|+.|+|+++ .+.++ .+...+..-..|+.|+|.+|...+ .+. ...+|++|.+.++
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N 108 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESN 108 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSS
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCC
Confidence 34578999999886 77764 355666777889999998875321 011 3367888888763
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=77.59 E-value=1.2 Score=39.00 Aligned_cols=96 Identities=19% Similarity=0.258 Sum_probs=57.0
Q ss_pred ccCCcceEEEeece-eeCCCCCCCCCcccceeeecce--eeChHHHHHHHhCCcccceeeeeccC-CceeEE-EeCCCcc
Q 021480 26 FLCQNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHI--TLSQDVFENLISSSPTLERLTLMNFD-GFTHLN-IDAPNLQ 100 (312)
Q Consensus 26 ~~~~~L~~L~L~~~-~l~~~~~~~~l~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~l~~~~-~~~~~~-i~~p~L~ 100 (312)
..|+.|+.+.+... .--+...|.+|.+|+++.|... .+.+. .+.+|.+|+.+.+-..- .++.-. -.+.+|+
T Consensus 285 ~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~----aF~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 285 MNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDD----AFAGCEQLERIAIPSSVTKIPESAFSNCTALN 360 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEEECTTCCBCCGGGGTTCTTCC
T ss_pred ccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHh----HhhCCCCCCEEEECcccCEEhHhHhhCCCCCC
Confidence 46899999988654 1122356888999999998542 24333 57899999999996431 111101 1457888
Q ss_pred eEEEeecccce-eeecCCcceEEEEe
Q 021480 101 FFDIGGVFDDV-TFENTFHLALVSIG 125 (312)
Q Consensus 101 ~L~~~~~~~~~-~~~~~~~L~~l~l~ 125 (312)
++.+.+....+ .+..+.+|+.+.+.
T Consensus 361 ~i~~~~~~~~~~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 361 NIEYSGSRSQWNAISTDSGLQNLPVA 386 (394)
T ss_dssp EEEESSCHHHHHTCBCCCCC------
T ss_pred EEEECCceeehhhhhccCCCCEEEeC
Confidence 88888743221 23456778877764
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=76.04 E-value=6 Score=34.42 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=64.3
Q ss_pred cCCcceEEEeeceeeC-CCCCCCCCcccceeeecceeeChHHHHHHHhCCcccceeeeeccCCceeEEE----eCCCcce
Q 021480 27 LCQNLIHLELFNCLLK-PPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDGFTHLNI----DAPNLQF 101 (312)
Q Consensus 27 ~~~~L~~L~L~~~~l~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~i----~~p~L~~ 101 (312)
.|..|+.+.+...... ....+..+..++........+... .+..|+.|+.+.+... +..+.- .+.+|++
T Consensus 251 ~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~----~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 251 GCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEK----TFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTT----TTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCE
T ss_pred ccccceeEEcCCCcceeeccccccccccceeccCceeeccc----cccccccccccccccc--cceechhhhcCCCCCCE
Confidence 4455555555443111 123455566666666655554332 4567888888887542 111110 2356777
Q ss_pred EEEeeccc---ceeeecCCcceEEEEeEEEeecCCccCCCCcchhHHHHhhcCCCccEEEEeee
Q 021480 102 FDIGGVFD---DVTFENTFHLALVSIGLYVNVKNDQAMGPGNSCKLLRFFVHLPHIRRLEIQSY 162 (312)
Q Consensus 102 L~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~L~l~~~ 162 (312)
+.+...+. ...+.++.+|+.+.+...... .. ..-+.++++|+.+++...
T Consensus 325 i~lp~~v~~I~~~aF~~c~~L~~i~lp~~l~~--------I~----~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 325 IDLPYLVEEIGKRSFRGCTSLSNINFPLSLRK--------IG----ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECCCTTCCEECTTTTTTCTTCCEECCCTTCCE--------EC----TTTBTTCTTCCEEEEEGG
T ss_pred EEeCCcccEEhHHhccCCCCCCEEEECccccE--------eh----HHHhhCCCCCCEEEECCC
Confidence 76654332 334667889998877311000 01 122567899999999653
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=63.50 E-value=5.2 Score=34.47 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=39.2
Q ss_pred ccCCcceEEEeece-eeCCCCCCCCCcccceeeeccee---eChHHHHHHHhCCcccceeeeec
Q 021480 26 FLCQNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHIT---LSQDVFENLISSSPTLERLTLMN 85 (312)
Q Consensus 26 ~~~~~L~~L~L~~~-~l~~~~~~~~l~~L~~L~L~~~~---~~~~~l~~ll~~cp~Le~L~l~~ 85 (312)
..|.+|+.+.+... .-.+...|.+|++|+.+.+.... +... .+.+|+.|+.+.+..
T Consensus 260 ~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 260 QNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCT
T ss_pred ceeehhccccccccceeccccccccccccccccccccccceehhh----hhcCCCCCCEEEcCc
Confidence 35788998888654 11223467889999999986543 3332 568899999998853
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=55.84 E-value=6.3 Score=28.41 Aligned_cols=52 Identities=17% Similarity=0.082 Sum_probs=34.7
Q ss_pred EEEeeceeeC--CCCCCCCCc-ccceeeecceeeChHHHHHHHhCCcccceeeeeccC
Q 021480 33 HLELFNCLLK--PPSTFKGFR-NLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFD 87 (312)
Q Consensus 33 ~L~L~~~~l~--~~~~~~~l~-~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~l~~~~ 87 (312)
.++.++..+. ..+ .++| +|+.|+|++|.++.- -...+...+.|+.|.|.++.
T Consensus 12 ~v~Cs~~~L~~~~vP--~~lp~~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLP--TAFPVDTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSC--SCCCTTCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCC--CCCCcCCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCC
Confidence 5666666665 322 2344 799999999987531 12346678889999888764
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=44.25 E-value=12 Score=32.06 Aligned_cols=95 Identities=17% Similarity=0.187 Sum_probs=57.4
Q ss_pred cccCCcceEEEeece-eeCCCCCCCCCcccceeeecce--eeChHHHHHHHhCCcccceeeeeccCCceeEE----EeCC
Q 021480 25 LFLCQNLIHLELFNC-LLKPPSTFKGFRNLKSLDLQHI--TLSQDVFENLISSSPTLERLTLMNFDGFTHLN----IDAP 97 (312)
Q Consensus 25 l~~~~~L~~L~L~~~-~l~~~~~~~~l~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~l~~~~~~~~~~----i~~p 97 (312)
++.|..|+.+.+... .--....+.++.+|+.+.+... .+.. ..+.+|+.|+.+.+.++. +..+. ..+.
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~----~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~ 310 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPY----LLCSGCSNLTKVVMDNSA-IETLEPRVFMDCV 310 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECT----TTTTTCTTCCEEEECCTT-CCEECTTTTTTCT
T ss_pred ccCCccceEEEcCCCccEeCccccceeehhccccccccceeccc----cccccccccccccccccc-cceehhhhhcCCC
Confidence 356899999988765 1122356778999999988553 2322 257899999999996542 11111 1335
Q ss_pred CcceEEEeeccc---ceeeecCCcceEEEE
Q 021480 98 NLQFFDIGGVFD---DVTFENTFHLALVSI 124 (312)
Q Consensus 98 ~L~~L~~~~~~~---~~~~~~~~~L~~l~l 124 (312)
+|+++.+...+. ...+.++.+|+.+.+
T Consensus 311 ~L~~i~lp~~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 311 KLSSVTLPTALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCCEEECCTTCCEECTTTTTTCTTCCCCCC
T ss_pred CCCEEEcCccccEEHHHHhhCCCCCCEEEE
Confidence 666666544322 223455666666554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.26 E-value=29 Score=23.60 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=7.1
Q ss_pred HhCCcccceeeee
Q 021480 72 ISSSPTLERLTLM 84 (312)
Q Consensus 72 l~~cp~Le~L~l~ 84 (312)
+.+|.+|+.+.+.
T Consensus 39 F~~C~~L~~i~~~ 51 (100)
T 2lz0_A 39 FSGCTALEKLILT 51 (100)
T ss_dssp STTCTTCCCEEEC
T ss_pred HhccCCccEEEEc
Confidence 4555555555554
Done!