Query 021481
Match_columns 312
No_of_seqs 212 out of 405
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:18:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14379 Myb_CC_LHEQLE: MYB-CC 99.9 2.5E-26 5.3E-31 168.6 6.8 51 142-192 1-51 (51)
2 PLN03162 golden-2 like transcr 99.9 4.7E-24 1E-28 207.8 6.5 62 36-98 231-292 (526)
3 TIGR01557 myb_SHAQKYF myb-like 99.9 5E-22 1.1E-26 148.0 6.5 56 40-95 1-56 (57)
4 PF00249 Myb_DNA-binding: Myb- 97.4 0.00036 7.9E-09 49.1 5.3 48 42-93 1-48 (48)
5 smart00426 TEA TEA domain. 90.5 0.3 6.4E-06 38.6 3.2 46 44-91 5-67 (68)
6 PF14379 Myb_CC_LHEQLE: MYB-CC 87.3 1.5 3.3E-05 32.8 4.9 34 157-191 6-39 (51)
7 PF01519 DUF16: Protein of unk 76.0 12 0.00026 31.7 6.8 26 158-186 64-89 (102)
8 PF15235 GRIN_C: G protein-reg 75.7 2.2 4.7E-05 37.8 2.4 20 164-183 71-90 (137)
9 TIGR02894 DNA_bind_RsfA transc 65.1 32 0.00068 31.4 7.4 52 37-94 43-94 (161)
10 smart00717 SANT SANT SWI3, AD 64.8 30 0.00066 22.4 5.6 44 43-91 2-45 (49)
11 cd00167 SANT 'SWI3, ADA2, N-Co 63.5 31 0.00067 22.1 5.4 44 44-92 1-44 (45)
12 smart00501 BRIGHT BRIGHT, ARID 61.7 7.3 0.00016 30.8 2.5 46 48-94 33-85 (93)
13 PF12776 Myb_DNA-bind_3: Myb/S 61.2 11 0.00024 29.1 3.4 54 44-97 1-66 (96)
14 PF01285 TEA: TEA/ATTS domain 52.9 15 0.00033 37.6 3.7 55 38-92 45-112 (431)
15 cd07646 I-BAR_IMD_IRSp53 Inver 52.9 1.2E+02 0.0027 29.1 9.5 69 143-214 66-143 (232)
16 cd07645 I-BAR_IMD_BAIAP2L1 Inv 37.0 3E+02 0.0066 26.5 9.4 69 143-214 64-141 (226)
17 KOG2856 Adaptor protein PACSIN 36.9 1.6E+02 0.0035 30.6 7.9 13 289-301 398-410 (472)
18 PF07384 DUF1497: Protein of u 31.2 40 0.00086 25.8 2.1 21 44-64 37-57 (59)
19 cd08783 Death_MALT1 Death doma 28.9 92 0.002 26.4 4.1 49 40-92 35-84 (97)
20 PRK10803 tol-pal system protei 28.1 1.7E+02 0.0037 27.7 6.3 40 150-190 54-94 (263)
21 PF01388 ARID: ARID/BRIGHT DNA 27.4 30 0.00066 26.9 1.0 46 48-94 37-89 (92)
22 PF00435 Spectrin: Spectrin re 25.5 2.7E+02 0.0059 20.3 6.7 50 165-217 42-91 (105)
23 PF09535 Gmx_para_CXXCG: Prote 23.9 38 0.00082 32.6 1.1 15 50-65 214-228 (237)
24 PF08127 Propeptide_C1: Peptid 23.2 51 0.0011 23.4 1.4 35 49-90 1-35 (41)
25 PHA02602 56 dCTP pyrophosphata 21.7 79 0.0017 29.2 2.6 17 158-174 31-47 (172)
26 PF03816 LytR_cpsA_psr: Cell e 20.5 84 0.0018 26.9 2.4 17 172-188 132-148 (149)
No 1
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=99.93 E-value=2.5e-26 Score=168.64 Aligned_cols=51 Identities=88% Similarity=1.125 Sum_probs=48.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 021481 142 GYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALN 192 (312)
Q Consensus 142 ~~qi~EALr~QmEVQrrLhEQLEVQR~LQlRIEAQGKYLQsiLekaqe~La 192 (312)
+++|+||||+||||||||||||||||+||+|||||||||++|||||+++++
T Consensus 1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s 51 (51)
T PF14379_consen 1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS 51 (51)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999999999999999999999864
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.89 E-value=4.7e-24 Score=207.81 Aligned_cols=62 Identities=48% Similarity=0.748 Sum_probs=59.0
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhccccc
Q 021481 36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA 98 (312)
Q Consensus 36 s~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~ 98 (312)
...+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+.+++
T Consensus 231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~ 292 (526)
T PLN03162 231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRH 292 (526)
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccc
Confidence 34789999999999999999999999 799999999999999999999999999999999875
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.86 E-value=5e-22 Score=147.95 Aligned_cols=56 Identities=63% Similarity=0.997 Sum_probs=54.3
Q ss_pred CCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhcc
Q 021481 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG 95 (312)
Q Consensus 40 K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~ 95 (312)
|+|++||+|+|++|++||+.||+.+.||||.|+++|++++||+.||+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 78999999999999999999998899999999999999999999999999999985
No 4
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.42 E-value=0.00036 Score=49.10 Aligned_cols=48 Identities=31% Similarity=0.439 Sum_probs=41.6
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 021481 42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93 (312)
Q Consensus 42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 93 (312)
|-.||+|=++.|++||.++|. + .-+.|-+.|+ .+-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 568999999999999999993 2 6899999998 8999999999999985
No 5
>smart00426 TEA TEA domain.
Probab=90.48 E-value=0.3 Score=38.56 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=30.0
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCChh-HHHhh---hC-----------CCCC--CHHHHHHhhhh
Q 021481 44 RWTAELHDRFVDAVTQLGGPDKATPK-TIMRT---MG-----------VKGL--TLYHLKSHLQK 91 (312)
Q Consensus 44 rWT~ELH~rFV~AV~qLGG~~kAtPK-~IL~l---M~-----------v~gL--T~~hVkSHLQK 91 (312)
.|.++|-..|++|+...- + ..+-| .+... .| ..|. |+.+|.||+|.
T Consensus 5 vWp~~lE~Af~~aL~~~~-~-~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYP-P-CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcC-c-cCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence 699999999999998775 2 22222 22211 01 2454 77899999984
No 6
>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif
Probab=87.29 E-value=1.5 Score=32.85 Aligned_cols=34 Identities=44% Similarity=0.498 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Q 021481 157 RRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL 191 (312)
Q Consensus 157 rrLhEQLEVQR~LQlRIEAQGKYLQsiLekaqe~L 191 (312)
.-|..|+||||+|.=.+|.|.+ ||.-+|...+-|
T Consensus 6 EALr~QmEvQrrLhEQLEvQr~-Lqlrieaqgkyl 39 (51)
T PF14379_consen 6 EALRMQMEVQRRLHEQLEVQRH-LQLRIEAQGKYL 39 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHH
Confidence 4577899999999999998855 665565555544
No 7
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=75.99 E-value=12 Score=31.70 Aligned_cols=26 Identities=46% Similarity=0.603 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 021481 158 RLHEQLEVQRRLQLRIEAQGKYLQSILEK 186 (312)
Q Consensus 158 rLhEQLEVQR~LQlRIEAQGKYLQsiLek 186 (312)
++-||+ +.||.+|.+||+-|++|++.
T Consensus 64 ~QGEqI---kel~~e~k~qgktL~~I~~~ 89 (102)
T PF01519_consen 64 KQGEQI---KELQVEQKAQGKTLQLILKT 89 (102)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 344555 78999999999999999943
No 8
>PF15235 GRIN_C: G protein-regulated inducer of neurite outgrowth C-terminus
Probab=75.68 E-value=2.2 Score=37.78 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q 021481 164 EVQRRLQLRIEAQGKYLQSI 183 (312)
Q Consensus 164 EVQR~LQlRIEAQGKYLQsi 183 (312)
-||+||+++||+|++....-
T Consensus 71 AIQkHLE~qi~e~~~q~~~~ 90 (137)
T PF15235_consen 71 AIQKHLERQIEEHERQRAPQ 90 (137)
T ss_pred HHHHHHHHHHHHhhhccccc
Confidence 38999999999999887553
No 9
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=65.14 E-value=32 Score=31.35 Aligned_cols=52 Identities=23% Similarity=0.326 Sum_probs=37.9
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhc
Q 021481 37 TDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94 (312)
Q Consensus 37 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl 94 (312)
|..-.+|||+..+-..+.+||..-- -.+-.++.. ...||+.+|-+-||.|..
T Consensus 43 TsAACGFRWNs~VRkqY~~~i~~AK-kqRk~~~~~-----~~~ltl~~vI~fLq~l~~ 94 (161)
T TIGR02894 43 TAAACGFRWNAYVRKQYEEAIELAK-KQRKELKRE-----AGSLTLQDVISFLQNLKT 94 (161)
T ss_pred cHHHhcchHHHHHHHHHHHHHHHHH-HHHhccccC-----cccCCHHHHHHHHHHHHh
Confidence 5567899999999999999997543 111112211 266999999999998863
No 10
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=64.78 E-value=30 Score=22.36 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=33.9
Q ss_pred cccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhh
Q 021481 43 LRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQK 91 (312)
Q Consensus 43 lrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQK 91 (312)
-.||++=...|+.+|.++| . ..-+.|-+.|+ +=|..+|+.+...
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g-~--~~w~~Ia~~~~--~rt~~~~~~~~~~ 45 (49)
T smart00717 2 GEWTEEEDELLIELVKKYG-K--NNWEKIAKELP--GRTAEQCRERWNN 45 (49)
T ss_pred CCCCHHHHHHHHHHHHHHC-c--CCHHHHHHHcC--CCCHHHHHHHHHH
Confidence 4699999999999999999 1 23566766664 7788888877654
No 11
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=63.51 E-value=31 Score=22.07 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=33.9
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 021481 44 RWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (312)
Q Consensus 44 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 92 (312)
.||++=+..|+.++.++|- ..-+.|-+.|+ +=|..+|+.|..++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---~~w~~Ia~~~~--~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---NNWEKIAKELP--GRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---CCHHHHHhHcC--CCCHHHHHHHHHHh
Confidence 4999999999999999992 24567777764 46788888876543
No 12
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=61.72 E-value=7.3 Score=30.78 Aligned_cols=46 Identities=30% Similarity=0.483 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhCCCCCCC----hhHHHhhhCCCCC---CHHHHHHhhhhhhc
Q 021481 48 ELHDRFVDAVTQLGGPDKAT----PKTIMRTMGVKGL---TLYHLKSHLQKYRL 94 (312)
Q Consensus 48 ELH~rFV~AV~qLGG~~kAt----PK~IL~lM~v~gL---T~~hVkSHLQKYRl 94 (312)
+|++-|. +|..+||.+..+ =+.|.+.||++.- ...++|+|.+||-+
T Consensus 33 dL~~Ly~-~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~ 85 (93)
T smart00501 33 DLYRLYR-LVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLL 85 (93)
T ss_pred cHHHHHH-HHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhH
Confidence 7999998 588999987544 3678899998752 35689999998854
No 13
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=61.18 E-value=11 Score=29.09 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=35.6
Q ss_pred ccCHHHHHHHHHHHHhh---CCC-CCCCh-----hHHHhhhC-C--CCCCHHHHHHhhhhhhcccc
Q 021481 44 RWTAELHDRFVDAVTQL---GGP-DKATP-----KTIMRTMG-V--KGLTLYHLKSHLQKYRLGKQ 97 (312)
Q Consensus 44 rWT~ELH~rFV~AV~qL---GG~-~kAtP-----K~IL~lM~-v--~gLT~~hVkSHLQKYRl~~~ 97 (312)
+||++..+-||+.+-+. |.- ....+ ..|.+.++ . -.+|..||++|+...|..-+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~ 66 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYR 66 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHH
Confidence 69999999999988443 433 12333 34555555 2 34688999999876665433
No 14
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=52.94 E-value=15 Score=37.63 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=29.4
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCChh----------HHHhhhCC-CC--CCHHHHHHhhhhh
Q 021481 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPK----------TIMRTMGV-KG--LTLYHLKSHLQKY 92 (312)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK----------~IL~lM~v-~g--LT~~hVkSHLQKY 92 (312)
+.+..-+|.+++...|++|+...---...+-+ -|-+-+.. -| =|+.+|.||+|..
T Consensus 45 ~~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 45 DGDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp -GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 45778899999999999999766311122211 11111111 23 3778999999988
No 15
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=52.93 E-value=1.2e+02 Score=29.06 Aligned_cols=69 Identities=28% Similarity=0.410 Sum_probs=50.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhHHHHHHHHHHHHHhhHHHHhhhcHHHHHHHHHHHHH
Q 021481 143 YQVTEALRVQMEVQRRLHEQLEVQ---------RRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAI 213 (312)
Q Consensus 143 ~qi~EALr~QmEVQrrLhEQLEVQ---------R~LQlRIEAQGKYLQsiLekaqe~La~~~~~~~gle~a~~eLs~l~~ 213 (312)
..|..||.-=-||+|.++.+||++ ..|+-++|..-|||...+.+=+ ..+-.-..++|-+++||-.|--
T Consensus 66 keLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE~k~E~D~k~i~a~~Kky~---~e~k~k~~sleK~qseLKKlRr 142 (232)
T cd07646 66 KELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLTAALKKYQ---TEHRSKGESLEKCQAELKKLRK 142 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 345566644447777776666644 3789999999999998775543 3466677899999999988765
Q ss_pred h
Q 021481 214 K 214 (312)
Q Consensus 214 ~ 214 (312)
+
T Consensus 143 K 143 (232)
T cd07646 143 K 143 (232)
T ss_pred h
Confidence 5
No 16
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=37.00 E-value=3e+02 Score=26.45 Aligned_cols=69 Identities=19% Similarity=0.310 Sum_probs=52.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHhhhcHHHHHHHHHHHHH
Q 021481 143 YQVTEALRVQMEVQRRLHEQLEV---------QRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAI 213 (312)
Q Consensus 143 ~qi~EALr~QmEVQrrLhEQLEV---------QR~LQlRIEAQGKYLQsiLekaqe~La~~~~~~~gle~a~~eLs~l~~ 213 (312)
..|.++|--=-||+|+++.|||. =..|.-.+|..-||+...+.+=+ ..+-.-..+||-+.++|--+--
T Consensus 64 keLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell~~LE~k~elD~kyi~a~~Kkyq---~E~k~k~dsLeK~~seLKK~RR 140 (226)
T cd07645 64 KELGHVLMEISDVHKKLNDSLEENFKKFHREIIAELERKTDLDVKYMTATLKRYQ---TEHKNKLDSLEKSQADLKKIRR 140 (226)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 34566664444888888888763 34788899999999999997633 3466777899999999988876
Q ss_pred h
Q 021481 214 K 214 (312)
Q Consensus 214 ~ 214 (312)
+
T Consensus 141 K 141 (226)
T cd07645 141 K 141 (226)
T ss_pred c
Confidence 6
No 17
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=36.92 E-value=1.6e+02 Score=30.65 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=10.0
Q ss_pred CCCCCCCCCcccc
Q 021481 289 GNGESLPLEGNMR 301 (312)
Q Consensus 289 ~~~~~~~~~~~~r 301 (312)
+|||+.|++|+-.
T Consensus 398 ~nGdsnPfdd~a~ 410 (472)
T KOG2856|consen 398 SNGDSNPFDDDAK 410 (472)
T ss_pred CCCCCCCCccccc
Confidence 5789999987643
No 18
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=31.25 E-value=40 Score=25.77 Aligned_cols=21 Identities=24% Similarity=0.713 Sum_probs=18.6
Q ss_pred ccCHHHHHHHHHHHHhhCCCC
Q 021481 44 RWTAELHDRFVDAVTQLGGPD 64 (312)
Q Consensus 44 rWT~ELH~rFV~AV~qLGG~~ 64 (312)
++..|+|..|-+-|.+|||-+
T Consensus 37 kfnqem~aefheri~klggk~ 57 (59)
T PF07384_consen 37 KFNQEMQAEFHERIKKLGGKN 57 (59)
T ss_pred HhhHHHHHHHHHHHHHhcccc
Confidence 578999999999999999843
No 19
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=28.90 E-value=92 Score=26.35 Aligned_cols=49 Identities=20% Similarity=0.448 Sum_probs=39.3
Q ss_pred CCCcccCH-HHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 021481 40 KPRLRWTA-ELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (312)
Q Consensus 40 K~RlrWT~-ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 92 (312)
.+|||-++ ||+++-...+..-| .--|..|+.|++.|=|+.++-.-||+-
T Consensus 35 ~~~fr~S~~el~~cslkvl~p~g----SPsk~LL~~~~~rg~Tv~~Ll~~L~~M 84 (97)
T cd08783 35 RGRFRLSCLDLEQCSLKVLEPEG----SPSRSLLKLLGERGCTVTELSEFLQAM 84 (97)
T ss_pred CCccccCHHHHHHHHHHHhcCCC----CchHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 34899888 88888877776555 234889999999999999999998853
No 20
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.12 E-value=1.7e+02 Score=27.70 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 021481 150 RVQMEVQRRLHEQ-LEVQRRLQLRIEAQGKYLQSILEKACKA 190 (312)
Q Consensus 150 r~QmEVQrrLhEQ-LEVQR~LQlRIEAQGKYLQsiLekaqe~ 190 (312)
++++|+|.+|.+. -|| +.|.=.||.+.--|+.|.+++.+-
T Consensus 54 ~~~~~l~~ql~~lq~ev-~~LrG~~E~~~~~l~~~~~rq~~~ 94 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDI-DSLRGQIQENQYQLNQVVERQKQI 94 (263)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4677888888543 233 468889999999999999988774
No 21
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=27.37 E-value=30 Score=26.86 Aligned_cols=46 Identities=35% Similarity=0.531 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhCCCCCCCh----hHHHhhhCCCCC-C--HHHHHHhhhhhhc
Q 021481 48 ELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGL-T--LYHLKSHLQKYRL 94 (312)
Q Consensus 48 ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gL-T--~~hVkSHLQKYRl 94 (312)
+|+.-|. +|...||.++.+- ..|-+.||++.- + ...++.|..+|=+
T Consensus 37 DL~~Ly~-~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 37 DLYKLYK-AVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp SHHHHHH-HHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTH
T ss_pred cHHHHHH-HHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhH
Confidence 7888776 6779999876554 458888988653 3 2578888887743
No 22
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=25.53 E-value=2.7e+02 Score=20.29 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHhhhcHHHHHHHHHHHHHhhcc
Q 021481 165 VQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSN 217 (312)
Q Consensus 165 VQR~LQlRIEAQGKYLQsiLekaqe~La~~~~~~~gle~a~~eLs~l~~~~~~ 217 (312)
-.+.++-.|..+..-+..|.+.++.-.... +..-...+..+.+|......
T Consensus 42 ~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~---~~~~~~i~~~~~~l~~~w~~ 91 (105)
T PF00435_consen 42 KHKELQEEIESRQERLESLNEQAQQLIDSG---PEDSDEIQEKLEELNQRWEA 91 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HTTHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHHH
Confidence 334455556666667777777776653322 33334555566666554333
No 23
>PF09535 Gmx_para_CXXCG: Protein of unknown function (Gmx_para_CXXCG); InterPro: IPR011750 This entry consists of at least 10 paralogous proteins from Myxococcus xanthus that lack detectable sequence similarity to any other protein family. An imperfectly conserved CXXCG motif, a probable binding site, appears twice in the multiple sequence alignment.
Probab=23.88 E-value=38 Score=32.59 Aligned_cols=15 Identities=53% Similarity=0.875 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhCCCCC
Q 021481 50 HDRFVDAVTQLGGPDK 65 (312)
Q Consensus 50 H~rFV~AV~qLGG~~k 65 (312)
-+||||||++|| .+.
T Consensus 214 TERFVeAv~rL~-l~G 228 (237)
T PF09535_consen 214 TERFVEAVQRLG-LDG 228 (237)
T ss_pred eHHHHHHHHhcC-CCc
Confidence 479999999999 443
No 24
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=23.18 E-value=51 Score=23.41 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhh
Q 021481 49 LHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQ 90 (312)
Q Consensus 49 LH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQ 90 (312)
|-+.||+-||...-..+|-.- .++.|..+|++.|-
T Consensus 1 Lsde~I~~IN~~~~tWkAG~N-------F~~~~~~~ik~LlG 35 (41)
T PF08127_consen 1 LSDEFIDYINSKNTTWKAGRN-------FENTSIEYIKRLLG 35 (41)
T ss_dssp S-HHHHHHHHHCT-SEEE-----------SSB-HHHHHHCS-
T ss_pred CCHHHHHHHHcCCCcccCCCC-------CCCCCHHHHHHHcC
Confidence 457899999998766666543 36667777776653
No 25
>PHA02602 56 dCTP pyrophosphatase; Provisional
Probab=21.68 E-value=79 Score=29.16 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021481 158 RLHEQLEVQRRLQLRIE 174 (312)
Q Consensus 158 rLhEQLEVQR~LQlRIE 174 (312)
+|+.-+++||+||.||-
T Consensus 31 pLq~m~dmQ~~lq~~l~ 47 (172)
T PHA02602 31 PLQVMLDMQKSLQVRLA 47 (172)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 56677888899999885
No 26
>PF03816 LytR_cpsA_psr: Cell envelope-related transcriptional attenuator domain; InterPro: IPR004474 This entry describes a domain of unknown function that is found in the predicted extracellular domain of a number of putative membrane-bound proteins. One of these is protein psr, described as a penicillin binding protein 5 (PDP-5) synthesis repressor. Another is Bacillus subtilis LytR, described as a transcriptional attenuator of itself and the LytABC operon, where LytC is N-acetylmuramoyl-L-alanine amidase. A third is CpsA, a putative regulatory protein involved in exocellular polysaccharide biosynthesis. These proteins share the property of having a short putative N-terminal cytoplasmic domain and transmembrane domain forming a signal-anchor.; PDB: 3PE5_B 3QFI_A 3NRO_B 3OKZ_B 3OWQ_C 3MEJ_A 4DE9_A 3TEP_A 3TEL_A 3TFL_A ....
Probab=20.53 E-value=84 Score=26.92 Aligned_cols=17 Identities=41% Similarity=0.546 Sum_probs=15.2
Q ss_pred HHHHhhHHHHHHHHHHH
Q 021481 172 RIEAQGKYLQSILEKAC 188 (312)
Q Consensus 172 RIEAQGKYLQsiLekaq 188 (312)
||+.|..||+++++|++
T Consensus 132 R~~rQ~~~l~al~~k~~ 148 (149)
T PF03816_consen 132 RIQRQQEVLKALLEKLK 148 (149)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 89999999999999874
Done!