Query 021481
Match_columns 312
No_of_seqs 212 out of 405
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 04:46:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 5.4E-30 1.8E-34 194.3 7.0 62 36-98 1-62 (64)
2 2yum_A ZZZ3 protein, zinc fing 90.3 0.48 1.6E-05 35.1 5.3 55 39-96 5-62 (75)
3 2yus_A SWI/SNF-related matrix- 87.9 1.3 4.5E-05 33.8 6.3 50 39-94 15-64 (79)
4 2cu7_A KIAA1915 protein; nucle 87.3 1.7 5.9E-05 32.0 6.5 51 39-95 6-56 (72)
5 1x41_A Transcriptional adaptor 87.1 2.2 7.5E-05 30.4 6.8 51 39-94 5-55 (60)
6 2xag_B REST corepressor 1; ami 86.2 1.3 4.6E-05 44.4 7.0 55 38-98 376-430 (482)
7 2iw5_B Protein corest, REST co 83.4 2 6.9E-05 39.6 6.3 56 36-97 127-182 (235)
8 2hzd_A Transcriptional enhance 83.1 1.5 5.2E-05 34.5 4.6 58 38-97 2-76 (82)
9 2cqq_A RSGI RUH-037, DNAJ homo 83.1 1.6 5.5E-05 32.9 4.7 48 42-95 8-58 (72)
10 2cqr_A RSGI RUH-043, DNAJ homo 79.3 4 0.00014 30.9 5.7 50 42-94 18-68 (73)
11 3sjm_A Telomeric repeat-bindin 74.8 8.7 0.0003 28.0 6.3 51 36-89 5-55 (64)
12 2ba2_A D12_ORF131, hypothetica 70.2 16 0.00054 29.0 7.1 39 145-186 34-72 (85)
13 1wgx_A KIAA1903 protein; MYB D 69.8 7 0.00024 29.9 4.9 49 44-95 10-59 (73)
14 2d9a_A B-MYB, MYB-related prot 68.5 19 0.00066 25.1 6.7 50 38-92 4-53 (60)
15 2elk_A SPCC24B10.08C protein; 68.4 6.5 0.00022 27.8 4.2 48 42-94 9-57 (58)
16 1guu_A C-MYB, MYB proto-oncoge 64.7 17 0.0006 24.6 5.7 46 42-92 3-48 (52)
17 2kes_A Synphilin-1; synphillin 60.9 8 0.00027 27.5 3.4 24 154-177 15-42 (48)
18 4eef_G F-HB80.4, designed hema 60.2 2.7 9.1E-05 32.6 0.9 45 43-90 21-66 (74)
19 1ity_A TRF1; helix-turn-helix, 60.1 31 0.0011 24.8 6.7 52 38-92 6-57 (69)
20 2cjj_A Radialis; plant develop 57.4 17 0.00058 28.6 5.2 48 43-95 9-59 (93)
21 3uun_A Dystrophin; triple heli 56.0 30 0.001 25.7 6.2 57 161-217 40-96 (119)
22 1gvd_A MYB proto-oncogene prot 55.9 29 0.001 23.5 5.6 46 42-92 3-48 (52)
23 2eqr_A N-COR1, N-COR, nuclear 55.8 38 0.0013 24.1 6.4 46 38-89 8-53 (61)
24 2li6_A SWI/SNF chromatin-remod 54.5 2.6 9E-05 33.9 0.0 46 47-95 49-98 (116)
25 2dim_A Cell division cycle 5-l 52.5 48 0.0017 23.8 6.6 50 38-92 5-54 (70)
26 2rq5_A Protein jumonji; develo 51.5 7.2 0.00025 32.1 2.2 47 48-95 43-96 (121)
27 3uul_A Utrophin; spectrin repe 50.9 36 0.0012 25.3 6.0 59 161-219 40-98 (118)
28 1c20_A DEAD ringer protein; DN 50.6 7.1 0.00024 31.8 2.0 47 48-95 53-106 (128)
29 3ok8_A Brain-specific angiogen 50.4 73 0.0025 28.9 8.8 68 144-214 72-148 (222)
30 2lm1_A Lysine-specific demethy 49.6 6.2 0.00021 30.9 1.5 46 48-94 45-96 (107)
31 2yqk_A Arginine-glutamic acid 48.2 17 0.0006 26.2 3.6 47 38-89 5-51 (63)
32 2eqy_A RBP2 like, jumonji, at 46.6 9.5 0.00033 31.0 2.2 46 48-94 43-94 (122)
33 1kkx_A Transcription regulator 46.3 5.8 0.0002 32.5 0.8 45 48-95 49-97 (123)
34 2jxj_A Histone demethylase jar 45.8 8.6 0.00029 29.6 1.7 46 48-94 37-88 (96)
35 2jrz_A Histone demethylase jar 44.6 11 0.00038 30.3 2.2 47 48-95 41-93 (117)
36 2cxy_A BAF250B subunit, HBAF25 43.9 8.1 0.00028 31.4 1.3 46 48-94 52-103 (125)
37 4fla_A Regulation of nuclear P 42.2 1.6E+02 0.0054 25.0 10.3 72 143-214 75-146 (152)
38 1w0t_A Telomeric repeat bindin 40.6 84 0.0029 21.3 6.3 48 42-92 2-49 (53)
39 2kk0_A AT-rich interactive dom 36.0 17 0.00058 30.4 2.1 47 48-95 65-118 (145)
40 1ig6_A MRF-2, modulator recogn 35.7 7.4 0.00025 30.6 -0.1 48 47-95 33-87 (107)
41 2crg_A Metastasis associated p 31.7 44 0.0015 24.6 3.6 47 38-89 4-50 (70)
42 3ghg_A Fibrinogen alpha chain; 27.8 3.5E+02 0.012 27.8 10.3 72 142-214 108-191 (562)
43 1gv2_A C-MYB, MYB proto-oncoge 26.6 1.4E+02 0.0047 22.7 5.8 46 42-92 4-49 (105)
44 2aje_A Telomere repeat-binding 26.0 1.5E+02 0.0053 23.7 6.1 50 37-89 8-59 (105)
45 2da3_A Alpha-fetoprotein enhan 25.7 1.2E+02 0.0042 21.7 5.1 60 36-98 15-74 (80)
46 1qgp_A Protein (double strande 25.3 93 0.0032 22.9 4.4 45 45-92 11-55 (77)
47 3tul_A Cell invasion protein S 25.1 1.1E+02 0.0039 26.6 5.4 63 146-221 29-98 (158)
48 2din_A Cell division cycle 5-l 24.5 1.9E+02 0.0064 20.3 6.0 48 40-94 7-54 (66)
49 2pih_A Protein YMCA; regulate 23.4 3.2E+02 0.011 22.6 8.5 73 146-219 33-109 (151)
50 2k9n_A MYB24; R2R3 domain, DNA 22.6 1.6E+02 0.0055 22.6 5.5 47 41-93 52-98 (107)
51 3osg_A MYB21; transcription-DN 20.4 2.2E+02 0.0074 22.5 6.0 50 38-93 7-56 (126)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.96 E-value=5.4e-30 Score=194.30 Aligned_cols=62 Identities=45% Similarity=0.763 Sum_probs=58.9
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhccccc
Q 021481 36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA 98 (312)
Q Consensus 36 s~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~ 98 (312)
++++|+|++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+..++
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 46799999999999999999999999 799999999999999999999999999999998764
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.34 E-value=0.48 Score=35.06 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=41.7
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCCh---hHHHhhhCCCCCCHHHHHHhhhhhhccc
Q 021481 39 PKPRLRWTAELHDRFVDAVTQLGGPDKATP---KTIMRTMGVKGLTLYHLKSHLQKYRLGK 96 (312)
Q Consensus 39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtP---K~IL~lM~v~gLT~~hVkSHLQKYRl~~ 96 (312)
...+-.||+|=++.|+++|..+| .+...| +.|-+.| +|=|..+|+.|.++|-...
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence 34455899999999999999999 333223 4555554 7899999999999997643
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=87.93 E-value=1.3 Score=33.85 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=40.9
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhc
Q 021481 39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94 (312)
Q Consensus 39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl 94 (312)
...+-.||+|=+.+|++||...|+ .=+.|-+.| ++=|..+++.|.++|-+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v--~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKD----DWNKVSEHV--GSRTQDECILHFLRLPI 64 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHH--SSCCHHHHHHHHTTSCC
T ss_pred cccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHhcc
Confidence 344678999999999999999994 346777776 47899999999998744
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=87.26 E-value=1.7 Score=31.98 Aligned_cols=51 Identities=20% Similarity=0.333 Sum_probs=41.3
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhcc
Q 021481 39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG 95 (312)
Q Consensus 39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~ 95 (312)
...+-.||+|=++.|+++|..+|- .=+.|-+. ++|=|..+|+.|.++|-..
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 345668999999999999999993 44666665 4789999999999988544
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=87.14 E-value=2.2 Score=30.41 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=40.4
Q ss_pred CCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhc
Q 021481 39 PKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94 (312)
Q Consensus 39 ~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl 94 (312)
.-.|-.||+|=.++|++||..+| . ..=+.|-+.| +|=|-.+++.|.++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G-~--~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCG-F--GNWQDVANQM--CTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTC-T--TCHHHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC-c--CcHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 44566899999999999999999 1 1346676666 68899999999988754
No 6
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=86.22 E-value=1.3 Score=44.37 Aligned_cols=55 Identities=25% Similarity=0.354 Sum_probs=45.8
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhccccc
Q 021481 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA 98 (312)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~ 98 (312)
..+..-+||+|=|..|++|+.+.| + .=+.|-+.++-. |..+|++|.++||.....
T Consensus 376 ~~~~~~~WT~eE~~~f~~al~~yG---k-dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 376 IQKCNARWTTEEQLLAVQAIRKYG---R-DFQAISDVIGNK--SVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHHT---T-CHHHHHHHHSSC--CHHHHHHHHHHTTTTTTH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHC---c-CHHHHHHHhCCC--CHHHHHHHHHHHHHHhCh
Confidence 346778999999999999999999 2 478888887654 899999999999886543
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=83.38 E-value=2 Score=39.62 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=46.4
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhcccc
Q 021481 36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQ 97 (312)
Q Consensus 36 s~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~ 97 (312)
.+..+..-+||+|=++.|++|+...|- .=..|-++ |++=|..+|++|..+||....
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~--VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDV--IGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHH--HSSCCHHHHHHHHHHTTTTTT
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHhh
Confidence 345577889999999999999999992 36778777 578899999999999986533
No 8
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=83.07 E-value=1.5 Score=34.54 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=36.7
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhh---h-C-----------C--CCCCHHHHHHhhhhhhcccc
Q 021481 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRT---M-G-----------V--KGLTLYHLKSHLQKYRLGKQ 97 (312)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~l---M-~-----------v--~gLT~~hVkSHLQKYRl~~~ 97 (312)
+++..=+|.++|-..|++|+...--.... |-+|.. | | . +-=|+.+|.||||.-+..+.
T Consensus 2 d~~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~ 76 (82)
T 2hzd_A 2 DNDAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS 76 (82)
T ss_dssp CGGGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred CCCcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence 34556689999999999999877511122 222311 1 1 1 23478899999997665443
No 9
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=83.07 E-value=1.6 Score=32.94 Aligned_cols=48 Identities=17% Similarity=0.377 Sum_probs=37.6
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCChh---HHHhhhCCCCCCHHHHHHhhhhhhcc
Q 021481 42 RLRWTAELHDRFVDAVTQLGGPDKATPK---TIMRTMGVKGLTLYHLKSHLQKYRLG 95 (312)
Q Consensus 42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK---~IL~lM~v~gLT~~hVkSHLQKYRl~ 95 (312)
+-.||.|=+..|+.|+..+++ -||. .|-+.| |=|..+|+.|.+++...
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~---~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG---GTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT---TCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCC---CCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence 346999999999999999983 2665 455555 67999999998876443
No 10
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=79.28 E-value=4 Score=30.88 Aligned_cols=50 Identities=10% Similarity=0.016 Sum_probs=39.8
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhC-CCCCCHHHHHHhhhhhhc
Q 021481 42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMG-VKGLTLYHLKSHLQKYRL 94 (312)
Q Consensus 42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~-v~gLT~~hVkSHLQKYRl 94 (312)
+-.||+|=...|++||..+|. -+|..--++=. |||=|..+|+.|.+.+.-
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~---~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPR---GSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCS---SSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCC---CCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 346999999999999999992 37876554433 689999999999887644
No 11
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=74.83 E-value=8.7 Score=27.98 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=37.1
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhh
Q 021481 36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHL 89 (312)
Q Consensus 36 s~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHL 89 (312)
++..+.|-.||+|=-+..+++|.+.|. . .=+.|.+.+++.|=|-.+++-+-
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~V~~~G~-~--~W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 5 TTNITKKQKWTVEESEWVKAGVQKYGE-G--NWAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHCT-T--CHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCC-C--chHHHHhhcCCCCCCHHHHHHHH
Confidence 445566778999999999999999992 1 35678888877788888887544
No 12
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=70.19 E-value=16 Score=29.02 Aligned_cols=39 Identities=44% Similarity=0.477 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 021481 145 VTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEK 186 (312)
Q Consensus 145 i~EALr~QmEVQrrLhEQLEVQR~LQlRIEAQGKYLQsiLek 186 (312)
|.+.+..|=|-=+.--||+ +.||+-+.|||+-|+.||+-
T Consensus 34 ie~~~~~QgEqI~~qGeqI---keLq~eqkaQg~tl~lil~t 72 (85)
T 2ba2_A 34 VMESFAVQNQNIDAQGEQI---KELQVEQKAQGKTLQLILEA 72 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 5667766655545555665 88999999999999999843
No 13
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=69.84 E-value=7 Score=29.87 Aligned_cols=49 Identities=14% Similarity=0.149 Sum_probs=38.6
Q ss_pred ccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhC-CCCCCHHHHHHhhhhhhcc
Q 021481 44 RWTAELHDRFVDAVTQLGGPDKATPKTIMRTMG-VKGLTLYHLKSHLQKYRLG 95 (312)
Q Consensus 44 rWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~-v~gLT~~hVkSHLQKYRl~ 95 (312)
.||.+=+.+|.+|+..++ +.+|-+--++=. |+|=|.++|+.|.+....+
T Consensus 10 ~WT~eE~k~fe~ALa~~~---~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP---KHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC---SSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCHHHHHHHHHHHHHCC---CCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 599999999999999987 448876554433 7899999999988765433
No 14
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=68.49 E-value=19 Score=25.13 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=38.2
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 021481 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (312)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 92 (312)
....|-.||+|=.++++++|.++|- ..=..|-+.| +|=|-.+++.|..+|
T Consensus 4 p~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 4 GSSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHH
Confidence 3556779999999999999999991 1235565654 688888888887765
No 15
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=68.38 E-value=6.5 Score=27.85 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=36.9
Q ss_pred CcccCHHHHHHHHHHHHhhC-CCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhc
Q 021481 42 RLRWTAELHDRFVDAVTQLG-GPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94 (312)
Q Consensus 42 RlrWT~ELH~rFV~AV~qLG-G~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl 94 (312)
+-.||+|=.+++++||.+.| + .=+.|-+.|+. |=|..+++.|.++|-+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~----~W~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLG----NWADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTT----CHHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC----CHHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 44699999999999999999 3 33566666532 6788999998887743
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=64.74 E-value=17 Score=24.56 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=36.1
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 021481 42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (312)
Q Consensus 42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 92 (312)
|-.||+|=.+.++++|.+.|. ..=+.|-+.| +|=|-.+++.|-.+|
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 2346666654 688888888887765
No 17
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=60.86 E-value=8 Score=27.52 Aligned_cols=24 Identities=38% Similarity=0.534 Sum_probs=17.9
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHhh
Q 021481 154 EVQRRLHEQ----LEVQRRLQLRIEAQG 177 (312)
Q Consensus 154 EVQrrLhEQ----LEVQR~LQlRIEAQG 177 (312)
.+-|+|+|| +-+|.+||.-+|+|.
T Consensus 15 kltkql~eqt~~rv~lq~qlq~lle~~k 42 (48)
T 2kes_A 15 KLTKQLKEQTVERVTLQNQLQQFLEAQK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455778887 568888888888773
No 18
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=60.19 E-value=2.7 Score=32.64 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=35.9
Q ss_pred cccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhC-CCCCCHHHHHHhhh
Q 021481 43 LRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMG-VKGLTLYHLKSHLQ 90 (312)
Q Consensus 43 lrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~-v~gLT~~hVkSHLQ 90 (312)
-.||.+=.+.|..|+.... +-||.+--++-. |||=|..+|+.|.|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp---~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTN---KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSC---SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 3599999999999998886 557866544333 78999999999986
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=60.07 E-value=31 Score=24.80 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=40.9
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 021481 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (312)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 92 (312)
..+.|-.||+|=-+..+++|.++|. -.=+.|.+.|+..|=|-.+++-+-..|
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 4678889999999999999999991 134678887765577888888776655
No 20
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=57.45 E-value=17 Score=28.61 Aligned_cols=48 Identities=25% Similarity=0.368 Sum_probs=37.7
Q ss_pred cccCHHHHHHHHHHHHhhCCCCCCChhH---HHhhhCCCCCCHHHHHHhhhhhhcc
Q 021481 43 LRWTAELHDRFVDAVTQLGGPDKATPKT---IMRTMGVKGLTLYHLKSHLQKYRLG 95 (312)
Q Consensus 43 lrWT~ELH~rFV~AV~qLGG~~kAtPK~---IL~lM~v~gLT~~hVkSHLQKYRl~ 95 (312)
-.||+|=...|++|+..+| . -+|.+ |-+. |||=|..+|+.|.+++.-.
T Consensus 9 ~~WT~eEd~~L~~al~~~~-~--~~~~rW~~IA~~--vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYD-K--DTPDRWANVARA--VEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSC-T--TCTTHHHHHHHH--STTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-C--CCCchHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 3699999999999999998 2 26654 4443 5799999999999877543
No 21
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=56.01 E-value=30 Score=25.72 Aligned_cols=57 Identities=12% Similarity=0.189 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHhhhcHHHHHHHHHHHHHhhcc
Q 021481 161 EQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSN 217 (312)
Q Consensus 161 EQLEVQR~LQlRIEAQGKYLQsiLekaqe~La~~~~~~~gle~a~~eLs~l~~~~~~ 217 (312)
.||+-.+.|+--|+++..-+.+|.+.+++-+......+.....-+..|.+|...-..
T Consensus 40 ~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~ 96 (119)
T 3uun_A 40 DQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWEC 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344445566667888888899999988886654332222223344555665554433
No 22
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=55.92 E-value=29 Score=23.48 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=35.1
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 021481 42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (312)
Q Consensus 42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 92 (312)
|-.||+|=.+.++++|.+.|. -.=..|-+.| +|=|-.+++.|-.+|
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 457999999999999999992 1234555554 688888888887766
No 23
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.80 E-value=38 Score=24.06 Aligned_cols=46 Identities=15% Similarity=0.053 Sum_probs=36.2
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhh
Q 021481 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHL 89 (312)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHL 89 (312)
.++..-.||+|=|+.|++|+.+.| . .=..|-.. +|+=|..+|..|.
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g--k--~w~~Ia~~--l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP--K--NFGLIASY--LERKSVPDCVLYY 53 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST--T--CHHHHHHH--CTTSCHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC--C--CHHHHHHH--cCCCCHHHHHHHH
Confidence 567778999999999999999998 2 34666554 5788888887664
No 24
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=54.51 E-value=2.6 Score=33.92 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCCh----hHHHhhhCCCCCCHHHHHHhhhhhhcc
Q 021481 47 AELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLTLYHLKSHLQKYRLG 95 (312)
Q Consensus 47 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT~~hVkSHLQKYRl~ 95 (312)
-+|+.-|.. |..+||.++.+- +.|.+.||++. -..+++|..||=+.
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLP 98 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHSH
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHHH
Confidence 378888875 789999987664 57889999988 57899999888653
No 25
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.49 E-value=48 Score=23.78 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=38.8
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 021481 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (312)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 92 (312)
....|=.||+|=.++++++|.++|- ..=+.|-+.|+ |=|-.+++-|-..|
T Consensus 5 ~~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 5 SSGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEW 54 (70)
T ss_dssp SCSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 3456678999999999999999991 13467777664 78888888887766
No 26
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=51.52 E-value=7.2 Score=32.08 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCh----hHHHhhhCCCCCC---HHHHHHhhhhhhcc
Q 021481 48 ELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLT---LYHLKSHLQKYRLG 95 (312)
Q Consensus 48 ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT---~~hVkSHLQKYRl~ 95 (312)
+|+.-|. +|..+||.++.|- +.|-..|++|... ...++.|..||=+.
T Consensus 43 DL~~Ly~-~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 43 DLACFFR-LINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp CHHHHHH-HHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred cHHHHHH-HHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 7887776 6779999988776 5788899987643 56899999888664
No 27
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=50.93 E-value=36 Score=25.34 Aligned_cols=59 Identities=12% Similarity=0.172 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHhhhcHHHHHHHHHHHHHhhcccC
Q 021481 161 EQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIKVSNDC 219 (312)
Q Consensus 161 EQLEVQR~LQlRIEAQGKYLQsiLekaqe~La~~~~~~~gle~a~~eLs~l~~~~~~~~ 219 (312)
+||+-.+.|+--|+++..-+.+|.+.+++-+.....++.....-+..|.+|...-...|
T Consensus 40 ~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~ 98 (118)
T 3uul_A 40 EQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALR 98 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 33444456666788888889999998888664332222233344556666665544433
No 28
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=50.55 E-value=7.1 Score=31.80 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhCCCCCCCh----hHHHhhhCCCCC-C--HHHHHHhhhhhhcc
Q 021481 48 ELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGL-T--LYHLKSHLQKYRLG 95 (312)
Q Consensus 48 ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gL-T--~~hVkSHLQKYRl~ 95 (312)
+||.-|.. |..+||.++.+- +.|.+.||++.- | -..+|.|..||=+.
T Consensus 53 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 53 DLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred cHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 89998886 779999887664 578889998652 2 57899998888553
No 29
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=50.42 E-value=73 Score=28.90 Aligned_cols=68 Identities=22% Similarity=0.231 Sum_probs=49.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHhhhcHHHHHHHHHHHHHh
Q 021481 144 QVTEALRVQMEVQRRLHEQLEV---------QRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIK 214 (312)
Q Consensus 144 qi~EALr~QmEVQrrLhEQLEV---------QR~LQlRIEAQGKYLQsiLekaqe~La~~~~~~~gle~a~~eLs~l~~~ 214 (312)
.|.+||.-=-|++|+|..+||. =.+|+.+||...||++....+=+. .+.....++|.+.+||-.+..+
T Consensus 72 eLG~vL~qis~~hR~i~~~le~~~k~f~~elI~pLE~k~e~D~k~i~~~~K~y~~---e~k~~~~~leK~~~elkK~~rk 148 (222)
T 3ok8_A 72 ILGEILVQMSDTQRHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEI---EYRHRAANLEKCMSELWRMERK 148 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHhhhh
Confidence 4677775555899999888774 348999999999999877644332 3455566788888888766533
No 30
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=49.62 E-value=6.2 Score=30.92 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhhhc
Q 021481 48 ELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLT--LYHLKSHLQKYRL 94 (312)
Q Consensus 48 ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT--~~hVkSHLQKYRl 94 (312)
+|++-|.. |..+||.++.+- +.|.+.||+|.-| -..++.|..||=+
T Consensus 45 dL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~ 96 (107)
T 2lm1_A 45 DLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILH 96 (107)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 89999986 679999987664 5788899987633 3578888887744
No 31
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.16 E-value=17 Score=26.21 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=34.0
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhh
Q 021481 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHL 89 (312)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHL 89 (312)
+...+-.||+|=|+.|.+|+...| + .=..|-+.| |+.=|..+|..+.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yG---K-df~~I~~~~-v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYG---K-NFFRIRKEL-LPNKETGELITFY 51 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTC---S-CHHHHHHHS-CTTSCHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhC---c-cHHHHHHHH-cCCCcHHHHHHHH
Confidence 344567899999999999999999 2 244554411 5677888887655
No 32
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=46.56 E-value=9.5 Score=30.96 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhhhc
Q 021481 48 ELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLT--LYHLKSHLQKYRL 94 (312)
Q Consensus 48 ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT--~~hVkSHLQKYRl 94 (312)
+|++-|.. |..+||.++.+- +.|.+.|+++.-+ ...++.|..||=+
T Consensus 43 DLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 43 DLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred cHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 78988885 789999887664 5788899987543 3578888888855
No 33
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=46.34 E-value=5.8 Score=32.52 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhhCCCCCCCh----hHHHhhhCCCCCCHHHHHHhhhhhhcc
Q 021481 48 ELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLTLYHLKSHLQKYRLG 95 (312)
Q Consensus 48 ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT~~hVkSHLQKYRl~ 95 (312)
+|++-|.. |..+||.++.+. +.|.+.|++|. -..++.|..||=+.
T Consensus 49 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 49 NLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILLP 97 (123)
T ss_dssp CTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHHH
Confidence 78888875 789999988775 57888999988 78899998888664
No 34
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=45.79 E-value=8.6 Score=29.55 Aligned_cols=46 Identities=22% Similarity=0.125 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhhhc
Q 021481 48 ELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLT--LYHLKSHLQKYRL 94 (312)
Q Consensus 48 ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT--~~hVkSHLQKYRl 94 (312)
+|+.-|.. |..+||.++.+- +.|.+.|+++.-+ -.++|.|..||=+
T Consensus 37 DL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 37 DLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp CCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred cHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 78888875 779999987664 5788899986532 4578888887743
No 35
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=44.57 E-value=11 Score=30.32 Aligned_cols=47 Identities=15% Similarity=0.093 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhhhcc
Q 021481 48 ELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLT--LYHLKSHLQKYRLG 95 (312)
Q Consensus 48 ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT--~~hVkSHLQKYRl~ 95 (312)
+|++-|.. |..+||.++.+- +.|.+.||++.-| -.+++.|..||=+.
T Consensus 41 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 41 DLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred cHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 88988885 779999987664 5788899987433 46789988888553
No 36
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=43.94 E-value=8.1 Score=31.40 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhCCCCCCCh----hHHHhhhCCCCCC--HHHHHHhhhhhhc
Q 021481 48 ELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKGLT--LYHLKSHLQKYRL 94 (312)
Q Consensus 48 ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~gLT--~~hVkSHLQKYRl 94 (312)
+|++-|.. |..+||.++.+- +.|.+.|+++.-| -..+|.|..||=+
T Consensus 52 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~ 103 (125)
T 2cxy_A 52 DLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLF 103 (125)
T ss_dssp CHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTH
T ss_pred cHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 78988875 779999987654 5788899998643 3578888887754
No 37
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=42.24 E-value=1.6e+02 Score=24.98 Aligned_cols=72 Identities=24% Similarity=0.218 Sum_probs=59.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHhhhcHHHHHHHHHHHHHh
Q 021481 143 YQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAIVAAGLEAAREELSELAIK 214 (312)
Q Consensus 143 ~qi~EALr~QmEVQrrLhEQLEVQR~LQlRIEAQGKYLQsiLekaqe~La~~~~~~~gle~a~~eLs~l~~~ 214 (312)
-.|.||..+=-|-.+||-.+++=.+.|.--+++=..|.+..|.++.+.+..+..-..-+.+.|.+|.+....
T Consensus 75 ~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 75 KTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356788888889999999999999999999999999999999999999887777666777777777665443
No 38
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=40.55 E-value=84 Score=21.31 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=36.0
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 021481 42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (312)
Q Consensus 42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 92 (312)
|-.||+|=.+..+++|...|. ..=+.|.+.|+..|=|-.+++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 457999999999999999991 134677777765577888887665443
No 39
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=36.00 E-value=17 Score=30.37 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhCCCCCCCh----hHHHhhhCCCC-CC--HHHHHHhhhhhhcc
Q 021481 48 ELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKG-LT--LYHLKSHLQKYRLG 95 (312)
Q Consensus 48 ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~g-LT--~~hVkSHLQKYRl~ 95 (312)
+|+.-|.. |..+||.++.+- +.|.+.|+++. .| -+.++.|..||=+.
T Consensus 65 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 65 DLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred cHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 78888875 779999987664 57888999876 22 46899998888553
No 40
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=35.69 E-value=7.4 Score=30.62 Aligned_cols=48 Identities=25% Similarity=0.324 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhCCCCCCCh----hHHHhhhCCCC-CC--HHHHHHhhhhhhcc
Q 021481 47 AELHDRFVDAVTQLGGPDKATP----KTIMRTMGVKG-LT--LYHLKSHLQKYRLG 95 (312)
Q Consensus 47 ~ELH~rFV~AV~qLGG~~kAtP----K~IL~lM~v~g-LT--~~hVkSHLQKYRl~ 95 (312)
-+|+.-|.. |..+||.++.+- +.|.+.||++. .| -.++++|..||=+.
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 488988875 779999987665 57888999864 22 35789988888553
No 41
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=31.74 E-value=44 Score=24.65 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=35.9
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhh
Q 021481 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHL 89 (312)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHL 89 (312)
.++..-.||+|=|..|.+|+...| + --..|-+.| |++-|..+|..+.
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yG---K-df~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYG---K-DFNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTC---S-CHHHHHHTT-CSSSCHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHhC---c-cHHHHHHHH-cCCCCHHHHHHHH
Confidence 456777999999999999999999 2 245554411 6788888888776
No 42
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.79 E-value=3.5e+02 Score=27.80 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=47.1
Q ss_pred CcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHHH-----------HhhhcHHHHHHHHH
Q 021481 142 GYQVTEALRVQM-EVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQA-----------IVAAGLEAAREELS 209 (312)
Q Consensus 142 ~~qi~EALr~Qm-EVQrrLhEQLEVQR~LQlRIEAQGKYLQsiLekaqe~La~~~-----------~~~~gle~a~~eLs 209 (312)
-.+|++-||-++ .++++|..||.--|.||=.|++|-.-+|. ||.+--+--+.+ .-.-.++.-..||.
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR-LEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLe 186 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR-LEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLE 186 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccccccchheeecchHHHHHHHHHHH
Confidence 457786666544 67788888887778999999999988875 454432211111 11235667778888
Q ss_pred HHHHh
Q 021481 210 ELAIK 214 (312)
Q Consensus 210 ~l~~~ 214 (312)
++.++
T Consensus 187 Qv~a~ 191 (562)
T 3ghg_A 187 QVIAK 191 (562)
T ss_dssp HHHTT
T ss_pred HHhhc
Confidence 87654
No 43
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=26.57 E-value=1.4e+02 Score=22.66 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=35.7
Q ss_pred CcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 021481 42 RLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (312)
Q Consensus 42 RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 92 (312)
+-.||+|=.++++++|...|. . .=+.|-+.| +|=|..+++.|-.+|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~-~--~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP-K--RWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT-T--CHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-C--cHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 447999999999999999993 1 234666655 688899998887765
No 44
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=26.01 E-value=1.5e+02 Score=23.67 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=38.6
Q ss_pred CCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhC--CCCCCHHHHHHhh
Q 021481 37 TDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMG--VKGLTLYHLKSHL 89 (312)
Q Consensus 37 ~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~--v~gLT~~hVkSHL 89 (312)
..++.|-.||+|=-+..+++|.++|. . .=+.|++.+. .+|=|--++|.+-
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~-g--~W~~I~~~~~~~f~~RT~v~lKdrW 59 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT-G--RWRDVKLCAFEDADHRTYVDLKDKW 59 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS-S--SHHHHHSSSSSSTTCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-C--ChHHHHHHhccccCCCCHHHHHHHH
Confidence 36788999999999999999999992 1 3457777553 3788888888543
No 45
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=25.72 E-value=1.2e+02 Score=21.74 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=40.0
Q ss_pred cCCCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhccccc
Q 021481 36 TTDPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQA 98 (312)
Q Consensus 36 s~~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl~~~~ 98 (312)
...+++|-++|++--. .++.+.... ...++..+.++...-|||..+|+-=.|.-|...++
T Consensus 15 ~~~rr~Rt~ft~~Ql~-~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 74 (80)
T 2da3_A 15 QRDKRLRTTITPEQLE-ILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK 74 (80)
T ss_dssp CCCTTCCSSCCTTTHH-HHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHH-HHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhh
Confidence 4567778888886332 334444443 35566666676667789999999999887765443
No 46
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.34 E-value=93 Score=22.89 Aligned_cols=45 Identities=13% Similarity=0.223 Sum_probs=35.4
Q ss_pred cCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhh
Q 021481 45 WTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKY 92 (312)
Q Consensus 45 WT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKY 92 (312)
=|++..++.++++...|--+..|.+.|-+.+|+ +.-.|..||-+-
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L 55 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSL 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHH
Confidence 367888899999999994367899999999985 567788887443
No 47
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=25.09 E-value=1.1e+02 Score=26.55 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-------hHHHHhhhcHHHHHHHHHHHHHhhccc
Q 021481 146 TEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKAL-------NDQAIVAAGLEAAREELSELAIKVSND 218 (312)
Q Consensus 146 ~EALr~QmEVQrrLhEQLEVQR~LQlRIEAQGKYLQsiLekaqe~L-------a~~~~~~~gle~a~~eLs~l~~~~~~~ 218 (312)
.++.+.+||.|..-||||- .=+|+.|+.|+++- ....++-.-+..+...|.++..+++..
T Consensus 29 la~~~am~~sqqq~~eqlS-------------~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L 95 (158)
T 3tul_A 29 LAVWQAMIESQKEMGIQVS-------------KEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSL 95 (158)
T ss_dssp HHHHHHHHHHHHHHTC--C-------------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 3678888999999988862 11335566665543 233334444555555566666666665
Q ss_pred CCC
Q 021481 219 CQG 221 (312)
Q Consensus 219 ~~~ 221 (312)
-|.
T Consensus 96 ~P~ 98 (158)
T 3tul_A 96 DPA 98 (158)
T ss_dssp ---
T ss_pred CCC
Confidence 554
No 48
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.46 E-value=1.9e+02 Score=20.34 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=37.4
Q ss_pred CCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhhc
Q 021481 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94 (312)
Q Consensus 40 K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYRl 94 (312)
..+-.||+|=.++++++|..+|- .=..|-+++ |=|-.+++.|.+.|-.
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~ 54 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLD 54 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhC
Confidence 44557999999999999999983 345666644 5889999999887644
No 49
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=23.37 E-value=3.2e+02 Score=22.59 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH--HHHHHHHHHHhh--HHHHhhhcHHHHHHHHHHHHHhhcccC
Q 021481 146 TEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYL--QSILEKACKALN--DQAIVAAGLEAAREELSELAIKVSNDC 219 (312)
Q Consensus 146 ~EALr~QmEVQrrLhEQLEVQR~LQlRIEAQGKYL--QsiLekaqe~La--~~~~~~~gle~a~~eLs~l~~~~~~~~ 219 (312)
.+++..--|+|+.+.+=...|..+|. ....|+|- +.+.++.++.-. ..+.--..+-.|..+|+.|...|+..-
T Consensus 33 ~~~i~~D~eaq~li~eF~~~Q~~~~~-~q~~Gk~~~~~e~~~el~~l~~~l~~np~V~~y~~Ae~~l~~LL~~I~~iI 109 (151)
T 2pih_A 33 EAQINENDKVSTIVNQIKALQKQAVN-LKHYEKHEALKQVEAKIDALQEELEEIPVIQEFRDSQMEVNDLLQLVAHTI 109 (151)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHH-HHHcCCccchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566888888887778888876 34589874 777766665311 233344466678888988888776543
No 50
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=22.59 E-value=1.6e+02 Score=22.56 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=37.2
Q ss_pred CCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 021481 41 PRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93 (312)
Q Consensus 41 ~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 93 (312)
.+-.||+|=...++++|.++|. .=..|-+.| ||=|-.+|+.|...+.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~ 98 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIA 98 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHH
Confidence 3568999999999999999993 235666655 7999999999876543
No 51
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=20.41 E-value=2.2e+02 Score=22.52 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=37.8
Q ss_pred CCCCCcccCHHHHHHHHHHHHhhCCCCCCChhHHHhhhCCCCCCHHHHHHhhhhhh
Q 021481 38 DPKPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYR 93 (312)
Q Consensus 38 ~~K~RlrWT~ELH~rFV~AV~qLGG~~kAtPK~IL~lM~v~gLT~~hVkSHLQKYR 93 (312)
.+..|-.||+|=-++++++|.+.|. .=+.|-+.| +|=|..+++.+-.+|-
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~--~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATF--PNRNARQCRDRWKNYL 56 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTC--TTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHhhhc
Confidence 4566778999999999999999993 356666654 5677777777666553
Done!