BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021482
         (312 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9ZE28|Y120_RICPR Uncharacterized protein RP120 OS=Rickettsia prowazekii (strain
           Madrid E) GN=RP120 PE=4 SV=1
          Length = 354

 Score = 58.2 bits (139), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 19/184 (10%)

Query: 134 MARETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDLVITPRHD 193
           + ++  +K  P +++ +GR T  +A  +K+   +N+ +VQI  P +  N FD +I P HD
Sbjct: 57  LLQDIIDKLPPDMIITAGRRTAVLAFYLKK-KFENIKLVQIMQPNLPYNIFDAIILPYHD 115

Query: 194 YYPLTPEGQEKIPQFLRRWITPCEPPD-----------GHVVLTTGALHQIDSAALRSAA 242
           Y  L   G  KI    +   + C+  +             ++   GAL+ I   A  SAA
Sbjct: 116 YRDLLYCGPAKI--LSKNIKSHCKVLNYSSRQHDIEKMMKIIPINGALNNI--TAKFSAA 171

Query: 243 SAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSI--RISFSMRT 300
           S   ++  P  K    V +GG      +  D+A  L + LLN + S  +I   ISFS RT
Sbjct: 172 SLELQKHYPHLKQFTAVIIGGNNKRFSFNEDIA-ILFSSLLNKIYSNQAIPFFISFSRRT 230

Query: 301 PEKV 304
           P+ V
Sbjct: 231 PQIV 234


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.138    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,661,911
Number of Sequences: 539616
Number of extensions: 5425369
Number of successful extensions: 11173
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11172
Number of HSP's gapped (non-prelim): 2
length of query: 312
length of database: 191,569,459
effective HSP length: 117
effective length of query: 195
effective length of database: 128,434,387
effective search space: 25044705465
effective search space used: 25044705465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)