Query 021482
Match_columns 312
No_of_seqs 133 out of 211
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 03:19:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06258 Mito_fiss_Elm1: Mitoc 100.0 3.5E-50 7.5E-55 384.2 22.0 201 39-311 1-204 (311)
2 COG3660 Predicted nucleoside-d 100.0 1.4E-44 3E-49 337.3 19.4 216 29-310 1-218 (329)
3 PRK13609 diacylglycerol glucos 84.1 32 0.00069 33.0 13.8 28 28-55 4-32 (380)
4 PRK12446 undecaprenyldiphospho 82.6 26 0.00057 34.1 12.6 26 29-54 2-27 (352)
5 PRK00726 murG undecaprenyldiph 81.0 51 0.0011 31.2 17.5 30 29-58 2-32 (357)
6 cd03785 GT1_MurG MurG is an N- 78.8 48 0.001 30.9 12.6 29 30-58 1-30 (350)
7 PLN02605 monogalactosyldiacylg 72.1 47 0.001 32.2 11.0 17 38-54 9-25 (382)
8 PRK13608 diacylglycerol glucos 60.9 93 0.002 30.4 10.7 27 29-55 6-33 (391)
9 PRK14818 NADH dehydrogenase su 59.9 16 0.00034 33.2 4.6 98 173-308 49-148 (173)
10 TIGR00215 lpxB lipid-A-disacch 56.5 88 0.0019 30.8 9.7 26 28-54 5-30 (385)
11 COG0707 MurG UDP-N-acetylgluco 56.0 1.2E+02 0.0026 30.2 10.5 109 136-272 84-200 (357)
12 PF07109 Mg-por_mtran_C: Magne 53.5 20 0.00044 29.6 3.9 33 269-303 7-39 (97)
13 PF08660 Alg14: Oligosaccharid 53.4 15 0.00032 32.7 3.4 34 141-174 90-127 (170)
14 PF13660 DUF4147: Domain of un 47.3 76 0.0017 30.0 7.2 104 140-280 38-148 (238)
15 cd01822 Lysophospholipase_L1_l 47.0 97 0.0021 25.8 7.3 50 249-298 60-110 (177)
16 COG0859 RfaF ADP-heptose:LPS h 45.0 70 0.0015 30.8 6.8 53 254-310 175-228 (334)
17 cd03786 GT1_UDP-GlcNAc_2-Epime 44.8 2.5E+02 0.0054 26.2 10.4 33 140-174 85-118 (363)
18 COG3260 Ni,Fe-hydrogenase III 44.0 51 0.0011 29.2 5.0 63 166-263 21-85 (148)
19 cd04962 GT1_like_5 This family 43.6 1.8E+02 0.0039 26.9 9.1 19 37-55 10-28 (371)
20 PF04412 DUF521: Protein of un 42.6 43 0.00093 34.1 5.1 96 204-306 241-337 (400)
21 PF01075 Glyco_transf_9: Glyco 39.8 40 0.00087 30.2 4.1 45 251-298 102-146 (247)
22 TIGR01133 murG undecaprenyldip 36.6 3.5E+02 0.0076 25.0 12.7 29 30-58 2-31 (348)
23 KOG0257 Kynurenine aminotransf 35.0 3.9E+02 0.0084 27.6 10.4 111 142-296 92-211 (420)
24 KOG0086 GTPase Rab4, small G p 34.8 94 0.002 28.3 5.4 74 233-311 91-166 (214)
25 COG0416 PlsX Fatty acid/phosph 34.6 3.7E+02 0.008 27.0 10.0 108 138-281 91-203 (338)
26 cd00951 KDGDH 5-dehydro-4-deox 34.0 3.3E+02 0.0071 25.8 9.4 50 256-306 35-85 (289)
27 TIGR02400 trehalose_OtsA alpha 32.7 2.3E+02 0.0049 29.0 8.5 48 220-267 258-306 (456)
28 cd05566 PTS_IIB_galactitol PTS 32.2 1.5E+02 0.0031 22.7 5.6 72 148-241 7-84 (89)
29 PRK14813 NADH dehydrogenase su 32.2 60 0.0013 29.9 3.8 98 174-308 47-146 (189)
30 cd00133 PTS_IIB PTS_IIB: subun 30.3 2E+02 0.0042 20.6 5.8 39 154-192 13-55 (84)
31 cd00952 CHBPH_aldolase Trans-o 30.1 3.7E+02 0.008 25.8 9.1 72 232-309 25-97 (309)
32 cd01835 SGNH_hydrolase_like_3 30.0 3.5E+02 0.0076 23.0 8.6 40 255-294 71-116 (193)
33 TIGR03438 probable methyltrans 29.9 3.4E+02 0.0073 25.9 8.8 47 255-303 138-184 (301)
34 TIGR03568 NeuC_NnaA UDP-N-acet 29.0 2.4E+02 0.0052 27.6 7.8 37 138-176 88-125 (365)
35 CHL00023 ndhK NADH dehydrogena 28.7 1E+02 0.0023 29.1 4.9 57 174-263 51-107 (225)
36 TIGR03249 KdgD 5-dehydro-4-deo 28.5 5.2E+02 0.011 24.5 10.0 44 255-298 39-83 (296)
37 cd03811 GT1_WabH_like This fam 27.7 4.2E+02 0.0091 23.2 15.4 29 30-58 1-32 (353)
38 cd04501 SGNH_hydrolase_like_4 26.7 2.5E+02 0.0055 23.6 6.7 51 245-295 51-102 (183)
39 COG2379 GckA Putative glycerat 26.4 3.9E+02 0.0084 27.6 8.7 94 141-272 36-131 (422)
40 PF11319 DUF3121: Protein of u 25.9 82 0.0018 28.3 3.6 42 144-186 132-173 (183)
41 PRK10528 multifunctional acyl- 25.6 2.6E+02 0.0056 24.4 6.7 52 243-294 61-114 (191)
42 PF09547 Spore_IV_A: Stage IV 25.0 1.7E+02 0.0037 30.6 6.0 80 222-308 149-229 (492)
43 cd04502 SGNH_hydrolase_like_7 24.9 3.8E+02 0.0083 22.4 7.4 43 245-287 42-84 (171)
44 PRK10964 ADP-heptose:LPS hepto 24.8 3.1E+02 0.0067 25.8 7.5 42 253-297 177-218 (322)
45 PF10258 RNA_GG_bind: PHAX RNA 24.6 77 0.0017 25.5 2.8 37 270-306 25-62 (87)
46 cd01841 NnaC_like NnaC (CMP-Ne 24.0 3.3E+02 0.0072 22.7 6.9 70 228-300 29-102 (174)
47 KOG1687 NADH-ubiquinone oxidor 23.9 1.4E+02 0.0031 26.5 4.5 95 173-309 50-150 (168)
48 PF01904 DUF72: Protein of unk 23.2 1.3E+02 0.0028 27.7 4.5 45 256-300 168-215 (230)
49 PF02698 DUF218: DUF218 domain 22.9 3.1E+02 0.0068 22.8 6.5 71 228-305 16-87 (155)
50 PRK10422 lipopolysaccharide co 22.7 4.7E+02 0.01 25.0 8.4 44 252-298 181-224 (352)
51 cd01833 XynB_like SGNH_hydrola 22.1 3.7E+02 0.008 22.0 6.7 47 250-296 37-86 (157)
52 cd01355 AcnX Putative Aconitas 22.0 1.9E+02 0.0042 29.4 5.7 84 204-300 234-320 (389)
53 PRK12353 putative amino acid k 21.2 2.5E+02 0.0054 27.4 6.2 44 255-298 3-51 (314)
54 COG1118 CysA ABC-type sulfate/ 21.2 1.1E+02 0.0024 30.7 3.7 45 40-93 140-184 (345)
55 COG1576 Uncharacterized conser 21.0 1.6E+02 0.0034 26.4 4.3 44 219-267 66-109 (155)
56 PF03771 SPDY: Domain of unkno 20.8 1E+02 0.0022 23.0 2.7 22 289-310 32-53 (63)
57 PRK14557 pyrH uridylate kinase 20.7 3E+02 0.0064 25.9 6.4 44 255-298 5-52 (247)
58 COG2236 Predicted phosphoribos 20.3 1.5E+02 0.0032 27.3 4.1 25 143-167 29-53 (192)
59 TIGR02201 heptsyl_trn_III lipo 20.2 4.1E+02 0.0089 25.2 7.4 44 252-298 179-222 (344)
60 PRK08410 2-hydroxyacid dehydro 20.2 2.4E+02 0.0051 27.2 5.8 101 144-283 147-247 (311)
61 PF08848 DUF1818: Domain of un 20.1 1E+02 0.0022 26.4 2.8 33 255-287 16-48 (117)
No 1
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=100.00 E-value=3.5e-50 Score=384.20 Aligned_cols=201 Identities=33% Similarity=0.495 Sum_probs=174.0
Q ss_pred ccchhhHHHHHHHhCC--CcccceeEeeccCCCccccccccchhhhhhhHHHHHHhhcchhhhhhccCCCCcccCCCCCC
Q 021482 39 PGSENQCVGLVRALGL--SDKHVLYRVTRPRGGINEWLHWLPVSVHKKLEYVIRQICGYSRLLSAARGEKPVCHPLENGG 116 (312)
Q Consensus 39 aG~~nQ~~GLaeALg~--~~~~~~~~~~~p~~~~~~~~~~Lp~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~p~~~~~~~ 116 (312)
|||+|||+|||+|||+ ++++ +.+.++.+| +|+|..+. ..+ .
T Consensus 1 ~Gh~~Q~~GLa~aL~~~~~~~~---~~v~~~~~~----~~lp~~~~---~~~-~-------------------------- 43 (311)
T PF06258_consen 1 PGHENQSLGLAEALGRLTPYEI---KRVDVRRPW----RWLPRLLP---APL-R-------------------------- 43 (311)
T ss_pred CchHHHHHHHHHHhcCccCcce---eEeccccch----hhcccccc---chH-H--------------------------
Confidence 7999999999999999 6665 457777776 55543221 000 0
Q ss_pred CCCCcchhhhhHHHHHHhhhhccCCCCCcEEEEecCccHHHHHHHHHHhCCCceEEEEcCCCCCCCCccEEeeccCCCCC
Q 021482 117 NVGLSSVLEADVRQIVTMARETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDLVITPRHDYYP 196 (312)
Q Consensus 117 ~~G~~~~l~~d~~~~~~~~~~~~~~p~PdLvIsaGr~T~~~~~~lrr~~gg~~~~V~i~~P~~~~~~FDlVi~P~HD~~~ 196 (312)
.+.. ...+.++++||||||||||+|+++++++||++||++++||||+|+++.+.||+||+|+||++
T Consensus 44 -----~~~~--------~~~~~~~~~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~~~~FDlvi~p~HD~~- 109 (311)
T PF06258_consen 44 -----ALLK--------PFSPALEPPWPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLPPRPFDLVIVPEHDRL- 109 (311)
T ss_pred -----Hhhh--------cccccccCCCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCCccccCEEEECcccCc-
Confidence 0000 00124567999999999999999999999999999999999999999999999999999998
Q ss_pred CCccccccchhhhhcccCCCCCCCCcEEEecCCCccCCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCCCcccCHHHHH
Q 021482 197 LTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAK 276 (312)
Q Consensus 197 l~~~~~~~~p~~~~~~~~~~~~~~~NVl~t~Galh~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~~~~~~~~a~ 276 (312)
++++||+.|.|+||++|++.|++++++|+++|+++++|+++|||||+|++|.|++++++
T Consensus 110 ---------------------~~~~Nvl~t~ga~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~ 168 (311)
T PF06258_consen 110 ---------------------PRGPNVLPTLGAPNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAE 168 (311)
T ss_pred ---------------------CCCCceEecccCCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-cCCeEEEEcCCCCcHHHHHHHhhc
Q 021482 277 QLTAHLLNVLV-SCGSIRISFSMRTPEKVLQQLLIC 311 (312)
Q Consensus 277 ~L~~~l~~l~~-~~~sl~ITtSRRTP~~~~~~L~~~ 311 (312)
+|+++|.++++ .+++|+||||||||++++++|++.
T Consensus 169 ~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~ 204 (311)
T PF06258_consen 169 RLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALREL 204 (311)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHh
Confidence 99999999998 567999999999999999999763
No 2
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.4e-44 Score=337.29 Aligned_cols=216 Identities=29% Similarity=0.400 Sum_probs=173.1
Q ss_pred eEEEEEcCCCccchhhHHHHHHHhCC-CcccceeEeeccCCCccccccccchhhhhhhHHHHHHhhcchhhhhhccCCCC
Q 021482 29 RRAVVIGNGYPGSENQCVGLVRALGL-SDKHVLYRVTRPRGGINEWLHWLPVSVHKKLEYVIRQICGYSRLLSAARGEKP 107 (312)
Q Consensus 29 ~~~wVLsDG~aG~~nQ~~GLaeALg~-~~~~~~~~~~~p~~~~~~~~~~Lp~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 107 (312)
+++|+++||++|++.||+|||+.|-. .+.. .++.+ +.+ ..||..++ ++
T Consensus 1 ~ki~aisD~RtGnt~QaiaLa~~l~r~eytt---k~l~~----~~l-~~lP~~wl-----------------------~~ 49 (329)
T COG3660 1 MKIWAISDGRTGNTHQAIALAEQLTRSEYTT---KLLEY----NNL-AKLPNFWL-----------------------AY 49 (329)
T ss_pred CceEEeecCCCccHHHHHHHHHHhhccceEE---EEeec----ccc-ccCchhhh-----------------------hc
Confidence 47999999999999999999999975 3433 23322 211 33333211 11
Q ss_pred cccCCCCCCCCCCcchhhhhHHHHHHhhhhccCCCCCcEEEEecCccHHHHHHHHHHhCCCceEEEEcCCCCCCCCccEE
Q 021482 108 VCHPLENGGNVGLSSVLEADVRQIVTMARETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDLV 187 (312)
Q Consensus 108 ~p~~~~~~~~~G~~~~l~~d~~~~~~~~~~~~~~p~PdLvIsaGr~T~~~~~~lrr~~gg~~~~V~i~~P~~~~~~FDlV 187 (312)
+|.+. ++..|+.-. +-....+|||||+|||+|+++++.+||.++| .++||||+|++|.+.||+|
T Consensus 50 yp~~~-------~~~l~~~~~--------~r~p~~~Pdl~I~aGrrta~l~~~lkk~~~~-~~vVqI~~Prlp~~~fDlv 113 (329)
T COG3660 50 YPIHI-------LRELFGPRL--------SRKPEQRPDLIITAGRRTAPLAFYLKKKFGG-IKVVQIQDPRLPYNHFDLV 113 (329)
T ss_pred CccHh-------HHHhhcCcc--------ccCccCCCceEEecccchhHHHHHHHHhcCC-ceEEEeeCCCCCcccceEE
Confidence 22211 133332211 1122358999999999999999999999998 8999999999999999999
Q ss_pred eeccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCccCCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCCC
Q 021482 188 ITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGC 267 (312)
Q Consensus 188 i~P~HD~~~l~~~~~~~~p~~~~~~~~~~~~~~~NVl~t~Galh~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~ 267 (312)
|+|+||...+ ....++|++...|++|+||+++|+..+++++..+ ++++++|||||||+|+.
T Consensus 114 ivp~HD~~~~------------------~s~~~~Nilpi~Gs~h~Vt~~~lAa~~e~~~~~~-p~~rq~vAVlVGg~nk~ 174 (329)
T COG3660 114 IVPYHDWREE------------------LSDQGPNILPINGSPHNVTSQRLAALREAFKHLL-PLPRQRVAVLVGGNNKA 174 (329)
T ss_pred eccchhhhhh------------------hhccCCceeeccCCCCcccHHHhhhhHHHHHhhC-CCCCceEEEEecCCCCC
Confidence 9999998721 1125999999999999999999999999987666 99999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHH-cCCeEEEEcCCCCcHHHHHHHhh
Q 021482 268 CRYGSDLAKQLTAHLLNVLV-SCGSIRISFSMRTPEKVLQQLLI 310 (312)
Q Consensus 268 ~~~~~~~a~~L~~~l~~l~~-~~~sl~ITtSRRTP~~~~~~L~~ 310 (312)
|.|.+|.+.+++..+...++ .|++++||+|||||+.+.++|+.
T Consensus 175 f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~ 218 (329)
T COG3660 175 FVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKN 218 (329)
T ss_pred CccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHh
Confidence 99999999999999999887 78999999999999999999875
No 3
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=84.10 E-value=32 Score=32.96 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=24.4
Q ss_pred eeEEEEEcCCCc-cchhhHHHHHHHhCCC
Q 021482 28 IRRAVVIGNGYP-GSENQCVGLVRALGLS 55 (312)
Q Consensus 28 ~~~~wVLsDG~a-G~~nQ~~GLaeALg~~ 55 (312)
..|+.|+|++.= ||..=+.+|+++|...
T Consensus 4 ~~rili~t~~~G~GH~~~a~al~~~l~~~ 32 (380)
T PRK13609 4 NPKVLILTAHYGNGHVQVAKTLEQTFRQK 32 (380)
T ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHHhc
Confidence 458999999987 8999999999999754
No 4
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=82.61 E-value=26 Score=34.13 Aligned_cols=26 Identities=19% Similarity=0.357 Sum_probs=23.4
Q ss_pred eEEEEEcCCCccchhhHHHHHHHhCC
Q 021482 29 RRAVVIGNGYPGSENQCVGLVRALGL 54 (312)
Q Consensus 29 ~~~wVLsDG~aG~~nQ~~GLaeALg~ 54 (312)
+++++.+-|--||..=+++||+.|.-
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHh
Confidence 47888999999999999999999974
No 5
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=80.96 E-value=51 Score=31.16 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=25.1
Q ss_pred eEEEEEcCCCccchhhHHHHHHHhCCC-ccc
Q 021482 29 RRAVVIGNGYPGSENQCVGLVRALGLS-DKH 58 (312)
Q Consensus 29 ~~~wVLsDG~aG~~nQ~~GLaeALg~~-~~~ 58 (312)
+++.+++.|.-||+.|+.-||++|.-. +++
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev 32 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEV 32 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEE
Confidence 578899999999999999999999754 444
No 6
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=78.76 E-value=48 Score=30.87 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=22.5
Q ss_pred EEEEEcCCCccchhhHHHHHHHhCCC-ccc
Q 021482 30 RAVVIGNGYPGSENQCVGLVRALGLS-DKH 58 (312)
Q Consensus 30 ~~wVLsDG~aG~~nQ~~GLaeALg~~-~~~ 58 (312)
|+.+-+-|.=||+.|++-||++|.-. +++
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev 30 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEV 30 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEE
Confidence 35666677779999999999999754 444
No 7
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=72.11 E-value=47 Score=32.22 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=14.3
Q ss_pred CccchhhHHHHHHHhCC
Q 021482 38 YPGSENQCVGLVRALGL 54 (312)
Q Consensus 38 ~aG~~nQ~~GLaeALg~ 54 (312)
=.||..=+.+|+++|..
T Consensus 9 G~GH~~aa~al~~~~~~ 25 (382)
T PLN02605 9 GGGHRASAEAIKDAFQL 25 (382)
T ss_pred CcChHHHHHHHHHHHHh
Confidence 35899999999999964
No 8
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=60.93 E-value=93 Score=30.42 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=21.3
Q ss_pred eEEEEEcCCCc-cchhhHHHHHHHhCCC
Q 021482 29 RRAVVIGNGYP-GSENQCVGLVRALGLS 55 (312)
Q Consensus 29 ~~~wVLsDG~a-G~~nQ~~GLaeALg~~ 55 (312)
++|.|||-+.- ||..=+.+|+++|...
T Consensus 6 ~~vlil~~~~G~GH~~aA~al~~~~~~~ 33 (391)
T PRK13608 6 KKILIITGSFGNGHMQVTQSIVNQLNDM 33 (391)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhh
Confidence 57888886553 7888899999999643
No 9
>PRK14818 NADH dehydrogenase subunit B; Provisional
Probab=59.90 E-value=16 Score=33.18 Aligned_cols=98 Identities=18% Similarity=0.271 Sum_probs=62.1
Q ss_pred EEcCCCCCCCCccEEeeccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCccCCHHHHHHHHhhchhhhCCC
Q 021482 173 QIQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPL 252 (312)
Q Consensus 173 ~i~~P~~~~~~FDlVi~P~HD~~~l~~~~~~~~p~~~~~~~~~~~~~~~NVl~t~Galh~vtp~~L~~a~~~~~~~la~l 252 (312)
.++.|+++.++|-.+++. +|+..+|++..|++..-..+.|... +...
T Consensus 49 a~~~p~yD~eRfGi~~~a--------------------------SPRhADvLlVtG~vT~km~~~l~~~-------yeqm 95 (173)
T PRK14818 49 QTGGPRADVMRFGAIPRA--------------------------SPRQADFMIVAGTLTYKMAERARLL-------YDQM 95 (173)
T ss_pred HhcCCccCHHHcCCeecC--------------------------CcccccEEEEeCcCccccHHHHHHH-------HHhC
Confidence 356788888888776653 2467789999999987777777544 3568
Q ss_pred CCCeEEEEEcC--CCCCcccCHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHH
Q 021482 253 PKPLVVVNVGG--PTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVLQQL 308 (312)
Q Consensus 253 p~p~vaVLIGG--~sk~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSRRTP~~~~~~L 308 (312)
|.|+++|-+|. .|+..-++.- .....+.+++ -..++|-.-+=+|+++.+.|
T Consensus 96 PePK~VIA~G~CA~sGGif~~sY---~~~~gvd~vI--pVDvyIPGCPP~PeaIl~gi 148 (173)
T PRK14818 96 PEPKYVISMGSCSNCGGLFQLGY---SVCKGVDKVI--PVDVYVPGCPPRPEALTEGL 148 (173)
T ss_pred CCCCEEEEeccccccCCcccCCc---ccccCCCCcc--CCcEEccCCCCCHHHHHHHH
Confidence 99999999996 3333322211 1122233322 24566666666666665555
No 10
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=56.53 E-value=88 Score=30.79 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCccchhhHHHHHHHhCC
Q 021482 28 IRRAVVIGNGYPGSENQCVGLVRALGL 54 (312)
Q Consensus 28 ~~~~wVLsDG~aG~~nQ~~GLaeALg~ 54 (312)
..++++.+-|.-||..=+ .|+++|-.
T Consensus 5 ~~ki~i~aGgtsGhi~pa-al~~~l~~ 30 (385)
T TIGR00215 5 IPTIALVAGEASGDILGA-GLRQQLKE 30 (385)
T ss_pred CCeEEEEeCCccHHHHHH-HHHHHHHh
Confidence 568899999999999999 99999974
No 11
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=55.99 E-value=1.2e+02 Score=30.15 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=59.3
Q ss_pred hhccCCCCCcEEEEecCccHHHHHHHHHHhCCCceEEEEcCCC------CCCCCccEEeeccC--CCCCCCccccccchh
Q 021482 136 RETYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPR------VHLNRFDLVITPRH--DYYPLTPEGQEKIPQ 207 (312)
Q Consensus 136 ~~~~~~p~PdLvIsaGr~T~~~~~~lrr~~gg~~~~V~i~~P~------~~~~~FDlVi~P~H--D~~~l~~~~~~~~p~ 207 (312)
+..+..-.||+||++|.-.........+..+ -.-.+|-|+=. +....-|.|.+... +.+
T Consensus 84 ~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~-iPv~ihEqn~~~G~ank~~~~~a~~V~~~f~~~~~~------------ 150 (357)
T COG0707 84 RKILKKLKPDVVIGTGGYVSGPVGIAAKLLG-IPVIIHEQNAVPGLANKILSKFAKKVASAFPKLEAG------------ 150 (357)
T ss_pred HHHHHHcCCCEEEecCCccccHHHHHHHhCC-CCEEEEecCCCcchhHHHhHHhhceeeecccccccc------------
Confidence 3455567899999999876655555555554 33335666543 22334466665544 221
Q ss_pred hhhcccCCCCCCCCcEEEecCCCccCCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCCCcccCH
Q 021482 208 FLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGS 272 (312)
Q Consensus 208 ~~~~~~~~~~~~~~NVl~t~Galh~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~~~~~~ 272 (312)
....|+..|- +++.++-...+...+ ++.....+.+++++||+-+...+++
T Consensus 151 ----------~~~~~~~~tG---~Pvr~~~~~~~~~~~--~~~~~~~~~~ilV~GGS~Ga~~ln~ 200 (357)
T COG0707 151 ----------VKPENVVVTG---IPVRPEFEELPAAEV--RKDGRLDKKTILVTGGSQGAKALND 200 (357)
T ss_pred ----------CCCCceEEec---CcccHHhhccchhhh--hhhccCCCcEEEEECCcchhHHHHH
Confidence 2445677663 344544333222222 2222225677888999877665544
No 12
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=53.52 E-value=20 Score=29.58 Aligned_cols=33 Identities=36% Similarity=0.501 Sum_probs=25.9
Q ss_pred ccCHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 021482 269 RYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEK 303 (312)
Q Consensus 269 ~~~~~~a~~L~~~l~~l~~~~~sl~ITtSRRTP~~ 303 (312)
+|..+++.++++.|.++ ..+++.+|+-+|||--
T Consensus 7 HYp~~d~~~~l~~La~~--t~~~~ifTfAP~T~~L 39 (97)
T PF07109_consen 7 HYPAEDAAQMLAHLASR--TRGSLIFTFAPRTPLL 39 (97)
T ss_pred ccCHHHHHHHHHHHHHh--ccCcEEEEECCCCHHH
Confidence 57788877776666654 4789999999999963
No 13
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=53.44 E-value=15 Score=32.66 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=24.9
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHh----CCCceEEEE
Q 021482 141 KDGPLLVVASGRDTISIASSIKRLA----SDNVFVVQI 174 (312)
Q Consensus 141 ~p~PdLvIsaGr~T~~~~~~lrr~~----gg~~~~V~i 174 (312)
...||+||++|-.|......+.+.. ..++++|+|
T Consensus 90 r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 90 RERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred HhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 4579999999999987666666665 112566888
No 14
>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A.
Probab=47.29 E-value=76 Score=30.02 Aligned_cols=104 Identities=22% Similarity=0.276 Sum_probs=57.4
Q ss_pred CCCCCcEEEEecCccHHHHHHHHHHhCCCceEEEEcCCCCCCCCccEEeeccCCCCCCCccccccchhhhhcccCCCCCC
Q 021482 140 EKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPP 219 (312)
Q Consensus 140 ~~p~PdLvIsaGr~T~~~~~~lrr~~gg~~~~V~i~~P~~~~~~FDlVi~P~HD~~~l~~~~~~~~p~~~~~~~~~~~~~ 219 (312)
.....-+|||.|-.+...+..+.+..+.+.. ==+||+|..... +
T Consensus 38 ~~~~~i~vvg~GKAa~~MA~a~~~~lg~~i~-------------~G~vv~~~g~~~-----------------------~ 81 (238)
T PF13660_consen 38 SKYGRIYVVGFGKAAAPMAEAAEEILGDRIV-------------GGLVVVPYGHES-----------------------P 81 (238)
T ss_dssp E--SSEEEEEESTTHHHHHHHHHHHCGGCEE-------------EEEEEEETT---------------------------
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHHhccccc-------------CceEEeCCcccC-----------------------C
Confidence 3456789999999999999999988876420 024555543322 3
Q ss_pred CCcEEEecCCCccCCHHHHHHHHhhchhhhCCCC-CCe-EEEEEcCCCCCcc-----cCHHHHHHHHH
Q 021482 220 DGHVVLTTGALHQIDSAALRSAASAWHEEFAPLP-KPL-VVVNVGGPTGCCR-----YGSDLAKQLTA 280 (312)
Q Consensus 220 ~~NVl~t~Galh~vtp~~L~~a~~~~~~~la~lp-~p~-vaVLIGG~sk~~~-----~~~~~a~~L~~ 280 (312)
-+|+-+..|. |++-.+.=-+|..+..+.+..++ .-. ++++-||-|.-+. .+-++-.++.+
T Consensus 82 ~~~i~v~~~~-HP~Pd~~s~~aa~~il~~~~~~~~~dlvl~LiSGGgSALl~~P~~gisLed~~~~~~ 148 (238)
T PF13660_consen 82 LPRIEVLEGG-HPLPDENSVRAARRILELARELTEDDLVLVLISGGGSALLELPADGISLEDKQELTK 148 (238)
T ss_dssp -TTSEEEEE--SSS--HHHHHHHHHHHHHHCC--TTSEEEEEE-TTHHHHS--B-TT--HHHHHHHHH
T ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCChHHhhcCCCCCCCHHHHHHHHH
Confidence 4566666677 99988777677777666666553 333 5555566665333 44455444433
No 15
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=47.00 E-value=97 Score=25.80 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=28.7
Q ss_pred hCCCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHH-cCCeEEEEcCC
Q 021482 249 FAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLV-SCGSIRISFSM 298 (312)
Q Consensus 249 la~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~-~~~sl~ITtSR 298 (312)
++..+-..+++.+|+++-....+.++..+-...+.+.++ .+..+.+.+..
T Consensus 60 ~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~~ 110 (177)
T cd01822 60 LAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVGMQ 110 (177)
T ss_pred HHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 333333577777887765555666665544444444443 46677766543
No 16
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=44.96 E-value=70 Score=30.82 Aligned_cols=53 Identities=15% Similarity=0.199 Sum_probs=40.0
Q ss_pred CCeEEEEEc-CCCCCcccCHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHhh
Q 021482 254 KPLVVVNVG-GPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVLQQLLI 310 (312)
Q Consensus 254 ~p~vaVLIG-G~sk~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSRRTP~~~~~~L~~ 310 (312)
+|++++..| +....-+|..+..++|++.+.+ .+..+.++.|. .-.+..+.|.+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~---~~~~Vvl~g~~-~e~e~~~~i~~ 228 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIA---KGYQVVLFGGP-DEEERAEEIAK 228 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHH---CCCEEEEecCh-HHHHHHHHHHH
Confidence 799999999 5558889999998877777654 55788888888 55555555543
No 17
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=44.79 E-value=2.5e+02 Score=26.25 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=19.5
Q ss_pred CCCCCcEEEEecCccHH-HHHHHHHHhCCCceEEEE
Q 021482 140 EKDGPLLVVASGRDTIS-IASSIKRLASDNVFVVQI 174 (312)
Q Consensus 140 ~~p~PdLvIsaGr~T~~-~~~~lrr~~gg~~~~V~i 174 (312)
....||+|++.|..... ++....+..+ ..+|++
T Consensus 85 ~~~~pDvV~~~g~~~~~~~~~~aa~~~~--iPvv~~ 118 (363)
T cd03786 85 LEEKPDLVLVLGDTNETLAAALAAFKLG--IPVAHV 118 (363)
T ss_pred HHhCCCEEEEeCCchHHHHHHHHHHHcC--CCEEEE
Confidence 33479999999965443 3334444444 345665
No 18
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=43.97 E-value=51 Score=29.17 Aligned_cols=63 Identities=27% Similarity=0.602 Sum_probs=40.9
Q ss_pred CCCceEEEEcCCCCCCCCccEEe--eccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCccCCHHHHHHHHh
Q 021482 166 SDNVFVVQIQHPRVHLNRFDLVI--TPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAAS 243 (312)
Q Consensus 166 gg~~~~V~i~~P~~~~~~FDlVi--~P~HD~~~l~~~~~~~~p~~~~~~~~~~~~~~~NVl~t~Galh~vtp~~L~~a~~ 243 (312)
++..-.+.+..|+++.++|-.-+ .|+|- .+++-.|+.-.-..+.| .
T Consensus 21 gCdIEi~a~~sP~YDaErfgI~~v~sPRhA----------------------------DiLlVTG~vT~~~~e~l---k- 68 (148)
T COG3260 21 GCDIEILAALSPRYDAERFGIKVVNSPRHA----------------------------DILLVTGAVTRQMREPL---K- 68 (148)
T ss_pred ceeEEEeeccCcccchHHheeEEeCCCccc----------------------------cEEEEeccccHHHHHHH---H-
Confidence 34444566778999999986544 45554 45666677644333333 3
Q ss_pred hchhhhCCCCCCeEEEEEcC
Q 021482 244 AWHEEFAPLPKPLVVVNVGG 263 (312)
Q Consensus 244 ~~~~~la~lp~p~vaVLIGG 263 (312)
..+...|.|.++|.+|-
T Consensus 69 ---k~Yea~PePKiViA~Ga 85 (148)
T COG3260 69 ---KAYEAMPEPKIVIAVGA 85 (148)
T ss_pred ---HHHHhCCCCcEEEEEcc
Confidence 33456899999999985
No 19
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=43.60 E-value=1.8e+02 Score=26.94 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=15.6
Q ss_pred CCccchhhHHHHHHHhCCC
Q 021482 37 GYPGSENQCVGLVRALGLS 55 (312)
Q Consensus 37 G~aG~~nQ~~GLaeALg~~ 55 (312)
..-|++.+..-||++|...
T Consensus 10 ~~gG~~~~~~~la~~L~~~ 28 (371)
T cd04962 10 TYGGSGVVATELGKALARR 28 (371)
T ss_pred CCCCccchHHHHHHHHHhc
Confidence 5678999999999999654
No 20
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=42.63 E-value=43 Score=34.05 Aligned_cols=96 Identities=16% Similarity=0.093 Sum_probs=59.7
Q ss_pred cchhhhhcccCCCCCCCCcEEEecCCCccCCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHH
Q 021482 204 KIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLL 283 (312)
Q Consensus 204 ~~p~~~~~~~~~~~~~~~NVl~t~Galh~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~ 283 (312)
.+|-|-...|||+-+.-.-.+-..-.--.|+.+.|++..+... ..-..+.-+|.+|-| | ++.++..++++.|.
T Consensus 241 s~~m~Hi~GvTPEa~~~~~a~~~~~e~i~i~~~dl~~~~~~l~---~~~~~~~D~V~lGcP--H--~S~~El~~ia~ll~ 313 (400)
T PF04412_consen 241 SVAMFHIVGVTPEAPTLEAAFGGKAERITITDADLEEVYEELN---TAGDEKVDLVALGCP--H--LSLEELREIAELLE 313 (400)
T ss_pred ceeeEEEeCCCCCCCcchhhhcCCceEEEeCHHHHHHHHHHhc---cCCCCCCCEEEECCC--C--CCHHHHHHHHHHHh
Confidence 3455555677777655443321001123678889987765542 344556778899988 4 45666777776666
Q ss_pred HHHH-cCCeEEEEcCCCCcHHHHH
Q 021482 284 NVLV-SCGSIRISFSMRTPEKVLQ 306 (312)
Q Consensus 284 ~l~~-~~~sl~ITtSRRTP~~~~~ 306 (312)
.--. .+..++|+|||-+=+.+.+
T Consensus 314 gr~~~~~~~~~i~t~~~v~~~a~~ 337 (400)
T PF04412_consen 314 GRKVHPNVPLWITTSRAVYELAER 337 (400)
T ss_pred CCCCCCCceEEEECCHHHHHHHHh
Confidence 5322 3579999999987776554
No 21
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=39.83 E-value=40 Score=30.17 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=27.4
Q ss_pred CCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q 021482 251 PLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSM 298 (312)
Q Consensus 251 ~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSR 298 (312)
...++.+++..|+....-.|..+...+|++.|.+ .+..+.+..+.
T Consensus 102 ~~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~---~~~~vvl~g~~ 146 (247)
T PF01075_consen 102 SKDKPYIGINPGASWPSKRWPAEKWAELIERLKE---RGYRVVLLGGP 146 (247)
T ss_dssp -TTSSEEEEE---SSGGGS--HHHHHHHHHHHCC---CT-EEEE--SS
T ss_pred hccCCeEEEeecCCCccccCCHHHHHHHHHHHHh---hCceEEEEccc
Confidence 5678999999999999999999998777776542 44567666653
No 22
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=36.58 E-value=3.5e+02 Score=25.04 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=23.6
Q ss_pred EEEEEcCCCccchhhHHHHHHHhCCC-ccc
Q 021482 30 RAVVIGNGYPGSENQCVGLVRALGLS-DKH 58 (312)
Q Consensus 30 ~~wVLsDG~aG~~nQ~~GLaeALg~~-~~~ 58 (312)
++++++-|.-||+.-+.-||++|.-. +++
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV 31 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEV 31 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEE
Confidence 68899999999999888899998654 444
No 23
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=34.97 E-value=3.9e+02 Score=27.63 Aligned_cols=111 Identities=13% Similarity=0.085 Sum_probs=65.3
Q ss_pred CCCcEEEEecCccHHHHHHHHHHhCCCceEEEEcCCCCCCCCccEEeeccCCCCCCCccccccchhhhhcccCCCCCCCC
Q 021482 142 DGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDG 221 (312)
Q Consensus 142 p~PdLvIsaGr~T~~~~~~lrr~~gg~~~~V~i~~P~~~~~~FDlVi~P~HD~~~l~~~~~~~~p~~~~~~~~~~~~~~~ 221 (312)
+.-|+.|++|-.-..+.+.+--...|.. |.|+.|-++..---.+++ -+-
T Consensus 92 ~~~eVlVT~GA~~ai~~~~~~l~~~GDe--Vii~eP~fd~Y~~~~~ma-----------------------------G~t 140 (420)
T KOG0257|consen 92 PDDEVLVTAGANEAISSALLGLLNPGDE--VIVFEPFFDCYIPQVVMA-----------------------------GGT 140 (420)
T ss_pred CcccEEEecCchHHHHHHHHHHcCCCCE--EEEecCcchhhhhHHhhc-----------------------------CCc
Confidence 4457999999998888777776666654 889999764433222221 122
Q ss_pred cEEEecC--------CCccCCHHHHHHHHhhchhhhCCCCCCeEEEEEcC-CCCCcccCHHHHHHHHHHHHHHHHcCCeE
Q 021482 222 HVVLTTG--------ALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGG-PTGCCRYGSDLAKQLTAHLLNVLVSCGSI 292 (312)
Q Consensus 222 NVl~t~G--------alh~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG-~sk~~~~~~~~a~~L~~~l~~l~~~~~sl 292 (312)
+|+++.. +-=.++++.|+.+ --+|..++++.== +--..-|+.++ +++|.++++..+.|
T Consensus 141 pv~v~~~~~~g~~~s~~~~~D~~~le~~---------~t~kTk~Ii~ntPhNPtGkvfsRee----Le~ia~l~~k~~~l 207 (420)
T KOG0257|consen 141 PVFVPLKPKEGNVSSSDWTLDPEELESK---------ITEKTKAIILNTPHNPTGKVFSREE----LERIAELCKKHGLL 207 (420)
T ss_pred ceeeccccccccccCccccCChHHHHhh---------ccCCccEEEEeCCCCCcCcccCHHH----HHHHHHHHHHCCEE
Confidence 2333222 2334566666543 2344555555433 33356677777 55666666666677
Q ss_pred EEEc
Q 021482 293 RISF 296 (312)
Q Consensus 293 ~ITt 296 (312)
.|+-
T Consensus 208 visD 211 (420)
T KOG0257|consen 208 VISD 211 (420)
T ss_pred EEEh
Confidence 7764
No 24
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.79 E-value=94 Score=28.35 Aligned_cols=74 Identities=22% Similarity=0.213 Sum_probs=46.2
Q ss_pred CCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCCCcccCHHHHHHHHHHH--HHHHHcCCeEEEEcCCCCcHHHHHHHhh
Q 021482 233 IDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHL--LNVLVSCGSIRISFSMRTPEKVLQQLLI 310 (312)
Q Consensus 233 vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l--~~l~~~~~sl~ITtSRRTP~~~~~~L~~ 310 (312)
+|...-=+|-..|......|..|-|+|++-|+-+... .+. -+..+ ...++.+.-..+-||--|.+.+++.+.+
T Consensus 91 ~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~--~~R---~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~ 165 (214)
T KOG0086|consen 91 ITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLD--PER---EVTFLEASRFAQENELMFLETSALTGENVEEAFLK 165 (214)
T ss_pred ccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcC--hhh---hhhHHHHHhhhcccceeeeeecccccccHHHHHHH
Confidence 3433333444556655556777888888888765443 322 22323 2333344457789999999999999988
Q ss_pred c
Q 021482 311 C 311 (312)
Q Consensus 311 ~ 311 (312)
|
T Consensus 166 c 166 (214)
T KOG0086|consen 166 C 166 (214)
T ss_pred H
Confidence 7
No 25
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=34.60 E-value=3.7e+02 Score=27.01 Aligned_cols=108 Identities=20% Similarity=0.227 Sum_probs=66.4
Q ss_pred ccCCCCCcEEEEecCccHHHHHHHHHHhCCCceEEEEcCCCCCCCCccEEeeccCCCCCCCccccccchhhhhcccCCCC
Q 021482 138 TYEKDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCE 217 (312)
Q Consensus 138 ~~~~p~PdLvIsaGr~T~~~~~~lrr~~gg~~~~V~i~~P~~~~~~FDlVi~P~HD~~~l~~~~~~~~p~~~~~~~~~~~ 217 (312)
.......|-+||+|...+..+.+.-+.- +.. -|.+|.+ +.+.|.-+
T Consensus 91 lVkeg~ADa~VSAGnTGAlma~a~~~lg--~i~--gI~RPAi------~~~~Pt~~------------------------ 136 (338)
T COG0416 91 LVKEGKADACVSAGNTGALMALALLKLG--RIK--GIDRPAL------ATLLPTID------------------------ 136 (338)
T ss_pred HHhcCcCCEEEecCchHHHHHHHHHHhc--cCC--CCCccce------eeeccccC------------------------
Confidence 3445679999999997776665543321 111 2556654 33444333
Q ss_pred CCCCcEEEecCCCccCCHHHHHHHH---hhchhhhCCCCCCeEEEE-EcC-CCCCcccCHHHHHHHHHH
Q 021482 218 PPDGHVVLTTGALHQIDSAALRSAA---SAWHEEFAPLPKPLVVVN-VGG-PTGCCRYGSDLAKQLTAH 281 (312)
Q Consensus 218 ~~~~NVl~t~Galh~vtp~~L~~a~---~~~~~~la~lp~p~vaVL-IGG-~sk~~~~~~~~a~~L~~~ 281 (312)
.+.-+++-+||=-..+|+.|.+=+ ..+.+.+-...+|+|++| ||= .+|...+..+. .+|...
T Consensus 137 -~~~~~~LDvGANvd~~~~~L~qfA~MG~~ya~~v~~~~~PrVgLLNIG~Ee~KG~e~~kea-~~lLk~ 203 (338)
T COG0416 137 -GGKTVVLDVGANVDCKPEHLVQFALMGSAYAEKVLGIKNPRVGLLNIGTEEIKGNELVKEA-YELLKE 203 (338)
T ss_pred -CCceEEEeCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecccccccCCHHHHHH-HHHHHh
Confidence 355789999999999998887633 345555555668887766 454 66776655443 334443
No 26
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=33.99 E-value=3.3e+02 Score=25.80 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=26.1
Q ss_pred eEEEEEcCCCC-CcccCHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHH
Q 021482 256 LVVVNVGGPTG-CCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVLQ 306 (312)
Q Consensus 256 ~vaVLIGG~sk-~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSRRTP~~~~~ 306 (312)
.-++.++|.++ .+.++.++-.++++.+.+.+.....+.+..+- +-.++.+
T Consensus 35 v~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~ 85 (289)
T cd00951 35 AAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIA 85 (289)
T ss_pred CCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHH
Confidence 44555555444 55666666666666555544323455665554 3344333
No 27
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=32.67 E-value=2.3e+02 Score=28.97 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=27.3
Q ss_pred CCcEEEecCCCccCCH-HHHHHHHhhchhhhCCCCCCeEEEEEcCCCCC
Q 021482 220 DGHVVLTTGALHQIDS-AALRSAASAWHEEFAPLPKPLVVVNVGGPTGC 267 (312)
Q Consensus 220 ~~NVl~t~Galh~vtp-~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~ 267 (312)
+..++...|-++...- ..+-+|-+.+.++..+..+..+.++|||+++.
T Consensus 258 ~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg 306 (456)
T TIGR02400 258 GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRG 306 (456)
T ss_pred CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCcc
Confidence 4567777777765543 22333433333333334445778889988864
No 28
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=32.21 E-value=1.5e+02 Score=22.68 Aligned_cols=72 Identities=21% Similarity=0.189 Sum_probs=41.2
Q ss_pred EEecCccH-HHHHHHHHHhCCCceEEEEc--CC-CC--CCCCccEEeeccCCCCCCCccccccchhhhhcccCCCCCCCC
Q 021482 148 VASGRDTI-SIASSIKRLASDNVFVVQIQ--HP-RV--HLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDG 221 (312)
Q Consensus 148 IsaGr~T~-~~~~~lrr~~gg~~~~V~i~--~P-~~--~~~~FDlVi~P~HD~~~l~~~~~~~~p~~~~~~~~~~~~~~~ 221 (312)
-++|-.|. .+..-+++.++..-..+.+- .- .+ ....+|+|++..+-.. ..+-
T Consensus 7 C~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~~~~~~~~~~~Dliist~~~~~----------------------~~~~ 64 (89)
T cd05566 7 CGTGVATSTVVASKVKELLKENGIDVKVEQCKIAEVPSLLDDADLIVSTTKVPE----------------------DYGI 64 (89)
T ss_pred CCCCccHHHHHHHHHHHHHHHCCCceEEEEecHHHhhcccCCCcEEEEcCCcCC----------------------CCCC
Confidence 34555555 56677888876444333331 11 12 2468999998766532 1233
Q ss_pred cEEEecCCCccCCHHHHHHH
Q 021482 222 HVVLTTGALHQIDSAALRSA 241 (312)
Q Consensus 222 NVl~t~Galh~vtp~~L~~a 241 (312)
.++....-++..+-+.+.++
T Consensus 65 p~i~v~~~l~~~d~~~i~~~ 84 (89)
T cd05566 65 PVINGLPFLTGIGEDKVYEE 84 (89)
T ss_pred CEEEEeeccccCChHHHHHH
Confidence 46666666777777666543
No 29
>PRK14813 NADH dehydrogenase subunit B; Provisional
Probab=32.16 E-value=60 Score=29.91 Aligned_cols=98 Identities=13% Similarity=0.275 Sum_probs=58.7
Q ss_pred EcCCCCCCCCccEEeeccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCccCCHHHHHHHHhhchhhhCCCC
Q 021482 174 IQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLP 253 (312)
Q Consensus 174 i~~P~~~~~~FDlVi~P~HD~~~l~~~~~~~~p~~~~~~~~~~~~~~~NVl~t~Galh~vtp~~L~~a~~~~~~~la~lp 253 (312)
++.|+++.++|-.+++. .|+..+|++..|+...-..+.+.+ .+...|
T Consensus 47 ~~~p~yD~eRfGi~~~a--------------------------sPR~ADvllVtG~Vt~km~~~l~~-------~y~qmP 93 (189)
T PRK14813 47 TNASNYDLERFGIFPRS--------------------------SPRQSDLMIVAGTVTMKMAERVVR-------LYEQMP 93 (189)
T ss_pred hcccCCCHHHcCCeecC--------------------------CcccceEEEEeccCchhhHHHHHH-------HHHhCC
Confidence 55688888888776542 235677899999887655555543 345689
Q ss_pred CCeEEEEEcC--CCCCcccCHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHH
Q 021482 254 KPLVVVNVGG--PTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVLQQL 308 (312)
Q Consensus 254 ~p~vaVLIGG--~sk~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSRRTP~~~~~~L 308 (312)
+|.++|-+|- .++..-|+.-. .....+.+++ -..++|-..+=+|+++.+.|
T Consensus 94 ePK~VIA~GaCA~sGG~~~~~sY--~~~~gvd~vI--pVDv~IPGCPP~PeaIl~gl 146 (189)
T PRK14813 94 EPRYVLSMGSCSNCGGPYWEHGY--HVLKGVDRII--PVDVYVPGCPPRPEALIGGL 146 (189)
T ss_pred CCCEEEEecccccCCCCcccCCc--ccccCCCCcc--CCcEEccCCCCCHHHHHHHH
Confidence 9999999986 23332222100 1122232222 24667777777777766544
No 30
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=30.35 E-value=2e+02 Score=20.63 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHhCCCceE--EEEcCCC--CCCCCccEEeeccC
Q 021482 154 TISIASSIKRLASDNVFV--VQIQHPR--VHLNRFDLVITPRH 192 (312)
Q Consensus 154 T~~~~~~lrr~~gg~~~~--V~i~~P~--~~~~~FDlVi~P~H 192 (312)
+..+...|++.++..-.. |...+-. .....+|+|++..+
T Consensus 13 s~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dliitt~~ 55 (84)
T cd00133 13 SSMLAEKLEKAAKELGIEVKVEAQGLSEVIDLADADLIISTVP 55 (84)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEcccchhhhcCCccEEEECCc
Confidence 334667778877544332 2223332 45689999998765
No 31
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=30.05 E-value=3.7e+02 Score=25.84 Aligned_cols=72 Identities=7% Similarity=0.078 Sum_probs=46.1
Q ss_pred cCCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCC-CcccCHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHh
Q 021482 232 QIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTG-CCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVLQQLL 309 (312)
Q Consensus 232 ~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk-~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSRRTP~~~~~~L~ 309 (312)
.|+.+.++.--+... ....-+++|+|.++ .+.++.++-+++++...+.+.....+++-++--+..++.+..+
T Consensus 25 ~iD~~~l~~lv~~li------~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~ 97 (309)
T cd00952 25 TVDLDETARLVERLI------AAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTR 97 (309)
T ss_pred CcCHHHHHHHHHHHH------HcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHH
Confidence 467777755433221 23455777777765 7788888888888877765533467788887655555555443
No 32
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=29.95 E-value=3.5e+02 Score=23.04 Aligned_cols=40 Identities=13% Similarity=-0.019 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCcc------cCHHHHHHHHHHHHHHHHcCCeEEE
Q 021482 255 PLVVVNVGGPTGCCR------YGSDLAKQLTAHLLNVLVSCGSIRI 294 (312)
Q Consensus 255 p~vaVLIGG~sk~~~------~~~~~a~~L~~~l~~l~~~~~sl~I 294 (312)
-.|+|.+|.+.-... .+.++.++....+.+.++.+..+++
T Consensus 71 d~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~vi~ 116 (193)
T cd01835 71 NRLVLSVGLNDTARGGRKRPQLSARAFLFGLNQLLEEAKRLVPVLV 116 (193)
T ss_pred CEEEEEecCcccccccCcccccCHHHHHHHHHHHHHHHhcCCcEEE
Confidence 467777888765443 4555555445555444444444444
No 33
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=29.85 E-value=3.4e+02 Score=25.86 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcHH
Q 021482 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEK 303 (312)
Q Consensus 255 p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSRRTP~~ 303 (312)
+.+++..|....++ +.+++.++++.+.+.++.|+.++|..--.-+.+
T Consensus 138 ~~~~~~~gs~~~~~--~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~ 184 (301)
T TIGR03438 138 RRLGFFPGSTIGNF--TPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPA 184 (301)
T ss_pred CeEEEEecccccCC--CHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHH
Confidence 56777777775555 588888999999998888888888766555544
No 34
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=28.96 E-value=2.4e+02 Score=27.58 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=21.9
Q ss_pred ccCCCCCcEEEEecCcc-HHHHHHHHHHhCCCceEEEEcC
Q 021482 138 TYEKDGPLLVVASGRDT-ISIASSIKRLASDNVFVVQIQH 176 (312)
Q Consensus 138 ~~~~p~PdLvIsaGr~T-~~~~~~lrr~~gg~~~~V~i~~ 176 (312)
.+....||+|+..|..+ ..++.......+ ..++|+-.
T Consensus 88 ~~~~~~Pd~vlv~GD~~~~la~alaA~~~~--IPv~Hvea 125 (365)
T TIGR03568 88 AFERLKPDLVVVLGDRFEMLAAAIAAALLN--IPIAHIHG 125 (365)
T ss_pred HHHHhCCCEEEEeCCchHHHHHHHHHHHhC--CcEEEEEC
Confidence 44556799999999544 333333333333 55676643
No 35
>CHL00023 ndhK NADH dehydrogenase subunit K
Probab=28.73 E-value=1e+02 Score=29.10 Aligned_cols=57 Identities=23% Similarity=0.464 Sum_probs=41.8
Q ss_pred EcCCCCCCCCccEEeeccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCCccCCHHHHHHHHhhchhhhCCCC
Q 021482 174 IQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLP 253 (312)
Q Consensus 174 i~~P~~~~~~FDlVi~P~HD~~~l~~~~~~~~p~~~~~~~~~~~~~~~NVl~t~Galh~vtp~~L~~a~~~~~~~la~lp 253 (312)
+..|+.+.++|-++++. .|+..+|++..|++..-..+.|...- ...|
T Consensus 51 ~~~p~yDleRfGi~~~a--------------------------SPRhADvliVtG~VT~km~~~L~rly-------eqmP 97 (225)
T CHL00023 51 LIGSRFDFDRYGLVPRS--------------------------SPRQADLILTAGTVTMKMAPSLVRLY-------EQMP 97 (225)
T ss_pred hCCCccCHHHcCCeecC--------------------------CcccceEEEEecCCccccHHHHHHHH-------HhcC
Confidence 45688888888776642 24667789999999887777776543 3468
Q ss_pred CCeEEEEEcC
Q 021482 254 KPLVVVNVGG 263 (312)
Q Consensus 254 ~p~vaVLIGG 263 (312)
.|.++|-+|.
T Consensus 98 ePK~VIA~Ga 107 (225)
T CHL00023 98 EPKYVIAMGA 107 (225)
T ss_pred CCCeEEEEcc
Confidence 8998888864
No 36
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=28.49 E-value=5.2e+02 Score=24.52 Aligned_cols=44 Identities=11% Similarity=0.011 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCC-CcccCHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q 021482 255 PLVVVNVGGPTG-CCRYGSDLAKQLTAHLLNVLVSCGSIRISFSM 298 (312)
Q Consensus 255 p~vaVLIGG~sk-~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSR 298 (312)
..-.+.++|.++ .+.++.++-.++++.+.+.++....+++.++.
T Consensus 39 Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~ 83 (296)
T TIGR03249 39 GLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG 83 (296)
T ss_pred CCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc
Confidence 344555655554 66677777666666665544333456666654
No 37
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=27.68 E-value=4.2e+02 Score=23.21 Aligned_cols=29 Identities=14% Similarity=0.103 Sum_probs=20.9
Q ss_pred EEEEEcCC--CccchhhHHHHHHHh-CCCccc
Q 021482 30 RAVVIGNG--YPGSENQCVGLVRAL-GLSDKH 58 (312)
Q Consensus 30 ~~wVLsDG--~aG~~nQ~~GLaeAL-g~~~~~ 58 (312)
++.+++++ .-|.+..+..|+++| ...+++
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v 32 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDV 32 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceE
Confidence 35566666 578899999999999 444444
No 38
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=26.71 E-value=2.5e+02 Score=23.63 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=27.0
Q ss_pred chhhhCCCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHH-cCCeEEEE
Q 021482 245 WHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLV-SCGSIRIS 295 (312)
Q Consensus 245 ~~~~la~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~-~~~sl~IT 295 (312)
+...+....-..+++.+|.+......+.++..+-.+++.+.++ .+..+.+.
T Consensus 51 l~~~~~~~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~ 102 (183)
T cd04501 51 FYEDVIALKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILA 102 (183)
T ss_pred HHHHHHhcCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 3333333333567777777776555555555544554444444 45554443
No 39
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=26.39 E-value=3.9e+02 Score=27.60 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=61.1
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHhCCCceEEEEcCCCCCCCCccEEeeccCCCCCCCccccccchhhhhcccCCCCCCC
Q 021482 141 KDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPD 220 (312)
Q Consensus 141 ~p~PdLvIsaGr~T~~~~~~lrr~~gg~~~~V~i~~P~~~~~~FDlVi~P~HD~~~l~~~~~~~~p~~~~~~~~~~~~~~ 220 (312)
+...-+||++|-.+...++++.+..++..- -+||++.-+.- +-
T Consensus 36 p~gr~~Vig~GKAs~~MA~a~~~~~~~~~~--------------GvVVt~~g~~~-----------------------~~ 78 (422)
T COG2379 36 PKGRTIVIGAGKASAEMARAFEEHWKGPLA--------------GVVVTPYGYGG-----------------------PC 78 (422)
T ss_pred CCCceEEEecchhHHHHHHHHHHHhccccC--------------ceEeccCccCC-----------------------CC
Confidence 345789999999999999999988743211 13444433332 22
Q ss_pred CcEEEecCCCccCCHHHHHHHHhhchhhhCCC-CCCe-EEEEEcCCCCCcccCH
Q 021482 221 GHVVLTTGALHQIDSAALRSAASAWHEEFAPL-PKPL-VVVNVGGPTGCCRYGS 272 (312)
Q Consensus 221 ~NVl~t~Galh~vtp~~L~~a~~~~~~~la~l-p~p~-vaVLIGG~sk~~~~~~ 272 (312)
+++-+. =+=|++..+.--.|..+..+.+..+ +.-+ ++++-||-|.-|.+..
T Consensus 79 ~~ieVi-ea~HPvPDe~s~~asrrlL~~v~~l~e~D~Vi~LISGGGSaL~e~P~ 131 (422)
T COG2379 79 PRIEVI-EAGHPVPDEASLKASRRLLELVSGLTEDDLVIVLISGGGSALLELPA 131 (422)
T ss_pred CceeEE-eCCCCCCCchhHHHHHHHHHHhcCCCCCcEEEEEEeCCchhhccCCc
Confidence 333333 3568998877777777777777777 4445 5555677888777663
No 40
>PF11319 DUF3121: Protein of unknown function (DUF3121); InterPro: IPR017738 Proteins in this entry, including VC_A0118 from Vibrio cholerae O1 biovar eltor str. N16961, are restricted to a subset of bacteria with the type VI secretion system, and are encoded among the type VI-associated pathogenicity islands. However, many species with type VI secretion lack a member of this family, suggesting that members of this family may be targets rather than components of the type VI secretion system.
Probab=25.88 E-value=82 Score=28.29 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=35.2
Q ss_pred CcEEEEecCccHHHHHHHHHHhCCCceEEEEcCCCCCCCCccE
Q 021482 144 PLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDL 186 (312)
Q Consensus 144 PdLvIsaGr~T~~~~~~lrr~~gg~~~~V~i~~P~~~~~~FDl 186 (312)
=-.++.+|| ..++...||++.+.+.+++..-++.++--.||+
T Consensus 132 ~G~vl~sgR-GlpaI~~iK~l~~~~~l~l~s~~~~~~~l~Fd~ 173 (183)
T PF11319_consen 132 NGYVLESGR-GLPAIEEIKRLLGAPRLTLRSNNGSVDGLTFDL 173 (183)
T ss_pred CCeEEEcCC-CccHHHHHHHHhCCCEEEEEccCCCcceeEEEc
Confidence 347889997 788999999999999988888777777778886
No 41
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=25.55 E-value=2.6e+02 Score=24.42 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=28.2
Q ss_pred hhchhhhCCCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHH-cCCe-EEE
Q 021482 243 SAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLV-SCGS-IRI 294 (312)
Q Consensus 243 ~~~~~~la~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~-~~~s-l~I 294 (312)
.+|...+...+-..+++++|.+.-....+.++..+-.+.+.+.++ .+.. +++
T Consensus 61 ~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 61 ARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred HHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 344444433323567777777776556677665555555555444 3543 444
No 42
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=25.03 E-value=1.7e+02 Score=30.61 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=57.2
Q ss_pred cEEEecCCCccCCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHcCCeE-EEEcCCCC
Q 021482 222 HVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSI-RISFSMRT 300 (312)
Q Consensus 222 NVl~t~Galh~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~~~~sl-~ITtSRRT 300 (312)
=|+.|-|+...+..+...+|.++--.+|..+.+|.+++| |....++ +++.+|+..|.+- ++..+ -+..-.=|
T Consensus 149 iVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvill----Ns~~P~s-~et~~L~~eL~ek--Y~vpVlpvnc~~l~ 221 (492)
T PF09547_consen 149 IVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILL----NSTKPYS-EETQELAEELEEK--YDVPVLPVNCEQLR 221 (492)
T ss_pred EEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEE----eCCCCCC-HHHHHHHHHHHHH--hCCcEEEeehHHcC
Confidence 488999999999999999999999999999999999988 3333344 4567788888763 45433 33444444
Q ss_pred cHHHHHHH
Q 021482 301 PEKVLQQL 308 (312)
Q Consensus 301 P~~~~~~L 308 (312)
-+++..+|
T Consensus 222 ~~DI~~Il 229 (492)
T PF09547_consen 222 EEDITRIL 229 (492)
T ss_pred HHHHHHHH
Confidence 44444444
No 43
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=24.89 E-value=3.8e+02 Score=22.35 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=21.0
Q ss_pred chhhhCCCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHH
Q 021482 245 WHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLV 287 (312)
Q Consensus 245 ~~~~la~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~ 287 (312)
|...+..+.-..+++++|.+.-....+.+...+-.+.+.+.++
T Consensus 42 ~~~~~~~~~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~ 84 (171)
T cd04502 42 FDRLVLPYQPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIR 84 (171)
T ss_pred HHhhhccCCCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHH
Confidence 3333333332355666666554444566665544444444443
No 44
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=24.81 E-value=3.1e+02 Score=25.83 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 021482 253 PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFS 297 (312)
Q Consensus 253 p~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtS 297 (312)
.++++++..||....=+|..+...+|++.+. +.|..+.++..
T Consensus 177 ~~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~---~~~~~ivl~~G 218 (322)
T PRK10964 177 AGPYLVFLHATTRDDKHWPEAHWRELIGLLA---PSGLRIKLPWG 218 (322)
T ss_pred CCCeEEEEeCCCcccccCCHHHHHHHHHHHH---HCCCeEEEeCC
Confidence 4677888888866566799999888888774 35667877743
No 45
>PF10258 RNA_GG_bind: PHAX RNA-binding domain; InterPro: IPR019385 The phosphorylated adaptor for RNA export (PHAX) protein transports U3 snoRNA from the nucleus after transcription []. This entry represents the highly conserved U3 snoRNA-binding domain of PHAX, which is characterised by having two pairs of adjacent glycines with the sequence motif GGx12GG.; PDB: 2XC7_A 2W4S_B.
Probab=24.63 E-value=77 Score=25.52 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=25.3
Q ss_pred cCHHHHHHHHHHHHHHHHcCCeEEEEcCC-CCcHHHHH
Q 021482 270 YGSDLAKQLTAHLLNVLVSCGSIRISFSM-RTPEKVLQ 306 (312)
Q Consensus 270 ~~~~~a~~L~~~l~~l~~~~~sl~ITtSR-RTP~~~~~ 306 (312)
++.+.+.+|+.....+-+.||....-.|| |||--+-=
T Consensus 25 lG~~~~~~l~~et~~Ie~~GG~~~~dG~RrRTpGGVF~ 62 (87)
T PF10258_consen 25 LGVEKALELLNETMKIEKNGGMMTADGSRRRTPGGVFF 62 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-EE-TTSSCE-SHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCeEeecCccCcCCCcchh
Confidence 55677888888888766577877777888 89986543
No 46
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=24.01 E-value=3.3e+02 Score=22.68 Aligned_cols=70 Identities=9% Similarity=-0.039 Sum_probs=35.7
Q ss_pred CCCccCCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHH-c--CCeEEEE-cCCCC
Q 021482 228 GALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLV-S--CGSIRIS-FSMRT 300 (312)
Q Consensus 228 Galh~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~-~--~~sl~IT-tSRRT 300 (312)
-+.+.-|.+.+ ...+...+....-..+.|++|.+.-....+.++..+-.+.+.+.++ . +..+++. ..+.+
T Consensus 29 ~g~~G~t~~~~---~~~~~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~ 102 (174)
T cd01841 29 LGIAGISSRQY---LEHIEPQLIQKNPSKVFLFLGTNDIGKEVSSNQFIKWYRDIIEQIREEFPNTKIYLLSVLPVL 102 (174)
T ss_pred cccccccHHHH---HHHHHHHHHhcCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEeeCCcC
Confidence 34444444333 2334344444444567777777776665666665554444444433 2 4555544 34443
No 47
>KOG1687 consensus NADH-ubiquinone oxidoreductase, NUFS7/PSST/20 kDa subunit [Energy production and conversion]
Probab=23.90 E-value=1.4e+02 Score=26.50 Aligned_cols=95 Identities=19% Similarity=0.386 Sum_probs=58.2
Q ss_pred EEcCCCCCCCCccEEeeccCCCCCCCccccccchhhhhcccCCCCCCCCcEEEecCCC-ccCCHHHHHHHHhhchhhhCC
Q 021482 173 QIQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHVVLTTGAL-HQIDSAALRSAASAWHEEFAP 251 (312)
Q Consensus 173 ~i~~P~~~~~~FDlVi~P~HD~~~l~~~~~~~~p~~~~~~~~~~~~~~~NVl~t~Gal-h~vtp~~L~~a~~~~~~~la~ 251 (312)
++.-|+.+.++|-+|+-+ +|+...++++.|.+ |.+-| ++..-++.
T Consensus 50 h~~a~RyD~DRyGvvfRa--------------------------SPRQaD~iivAGTlTnKMAP--------alrkvYdQ 95 (168)
T KOG1687|consen 50 HLAAPRYDMDRYGVVFRA--------------------------SPRQADLIIVAGTLTNKMAP--------ALRKVYDQ 95 (168)
T ss_pred HhccccccccccceeecC--------------------------CCccccEEEEeccchhhhcH--------HHHHHHhh
Confidence 455688888888888753 24677788888876 33333 23456778
Q ss_pred CCCCeEEEEEcC-----CCCCcccCHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHh
Q 021482 252 LPKPLVVVNVGG-----PTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVLQQLL 309 (312)
Q Consensus 252 lp~p~vaVLIGG-----~sk~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSRRTP~~~~~~L~ 309 (312)
+|.|++++-.|- ---||.|+. ++...+++ -..++|-.-+=|++++...|.
T Consensus 96 MPEpr~VisMGsCangGGyyhysYSv------vRGcDrii--PVDiYvPGCPPtaEAllygil 150 (168)
T KOG1687|consen 96 MPEPRWVISMGSCANGGGYYHYSYSV------VRGCDRII--PVDIYVPGCPPTAEALLYGIL 150 (168)
T ss_pred CCCCeeEEEecccccCCceEEEEehh------hcccccee--eeeeecCCCCCCHHHHHHHHH
Confidence 999999988765 222444432 22222221 246677777777777665543
No 48
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=23.23 E-value=1.3e+02 Score=27.67 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=28.8
Q ss_pred eEEEEEcCCCC---CcccCHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Q 021482 256 LVVVNVGGPTG---CCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRT 300 (312)
Q Consensus 256 ~vaVLIGG~sk---~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSRRT 300 (312)
..+=|.|.+.. .+.|++++.+++++.+.+..+.+..++|.+.=..
T Consensus 168 ~y~RlhG~~~~~~~~~~Ys~~eL~~~a~~i~~~~~~~~~v~v~fnN~~ 215 (230)
T PF01904_consen 168 AYVRLHGRNGEGWYDYRYSDEELEEWAERIRAWAAQGKEVYVFFNNDY 215 (230)
T ss_dssp EEEEE--S-TTTTTB----HHHHHHHHHHHHHHHTCSSEEEEEE-SBC
T ss_pred eEEeeccCcccccccccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 44556777664 7899999999999999998877788888876543
No 49
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=22.91 E-value=3.1e+02 Score=22.79 Aligned_cols=71 Identities=23% Similarity=0.192 Sum_probs=30.8
Q ss_pred CCCccCCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHcCCeE-EEEcCCCCcHHHH
Q 021482 228 GALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSI-RISFSMRTPEKVL 305 (312)
Q Consensus 228 Galh~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~~~~sl-~ITtSRRTP~~~~ 305 (312)
|.++....+++..|..-|++..++ .+++.||.......++ +..+.+.+.+.=-....+ +-..|+=|=+++.
T Consensus 16 ~~~~~~~~~R~~~a~~L~~~g~~~-----~il~SGg~~~~~~~~e--a~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~ 87 (155)
T PF02698_consen 16 GQLSPESRERLDEAARLYKAGYAP-----RILFSGGYGHGDGRSE--AEAMRDYLIELGVPEERIILEPKSTNTYENAR 87 (155)
T ss_dssp -----S-HHHHHHHHHHHH-HHT-------EEEE--SSTTHTS-H--HHHHHHHHHHT---GGGEEEE----SHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHhcCCCC-----eEEECCCCCCCCCCCH--HHHHHHHHHhcccchheeEccCCCCCHHHHHH
Confidence 456778889998888887764433 2778898887763333 444444444320022233 3444554544443
No 50
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=22.68 E-value=4.7e+02 Score=25.04 Aligned_cols=44 Identities=9% Similarity=0.018 Sum_probs=34.4
Q ss_pred CCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q 021482 252 LPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSM 298 (312)
Q Consensus 252 lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSR 298 (312)
.+++.+++..|+....-.|..+...++++.|. +.+..+.++.+.
T Consensus 181 ~~~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~---~~~~~vvl~ggp 224 (352)
T PRK10422 181 VTQNYVVIQPTARQIFKCWDNDKFSAVIDALQ---ARGYEVVLTSGP 224 (352)
T ss_pred CCCCeEEEecCCCccccCCCHHHHHHHHHHHH---HCCCeEEEEcCC
Confidence 35789999999988888899999888877764 356788888654
No 51
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.07 E-value=3.7e+02 Score=21.99 Aligned_cols=47 Identities=13% Similarity=0.096 Sum_probs=24.8
Q ss_pred CCCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHH-c--CCeEEEEc
Q 021482 250 APLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLV-S--CGSIRISF 296 (312)
Q Consensus 250 a~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~-~--~~sl~ITt 296 (312)
...+--.+++++|++.-....+.+...+-.+.+.+.++ . +..+++++
T Consensus 37 ~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 86 (157)
T cd01833 37 LAAKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAANPDVKIIVAT 86 (157)
T ss_pred ccCCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 34433467777777766555666555444444444333 2 45566543
No 52
>cd01355 AcnX Putative Aconitase X catalytic domain. Putative Aconitase X catalytic domain. It is predicted by comparative genomic analysis. The proteins are mainly found in archaea and proteobacteria. They are distantly related to Aconitase family of proteins by sequence similarity and seconary structure prediction. The functions have not yet been experimentally characterized. Thus, the prediction should be treated with caution.
Probab=22.02 E-value=1.9e+02 Score=29.41 Aligned_cols=84 Identities=17% Similarity=0.130 Sum_probs=49.1
Q ss_pred cchhhhhcccCCCCCCC--CcEEEecCCCccCCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCCCcccCHHHHHHHHHH
Q 021482 204 KIPQFLRRWITPCEPPD--GHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAH 281 (312)
Q Consensus 204 ~~p~~~~~~~~~~~~~~--~NVl~t~Galh~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~ 281 (312)
-++-|--..+||+.+.. +++ .--.|+.+.|++...++ .......-+|.+|-| +++.++.+++++.
T Consensus 234 s~am~Hi~gvTPE~~~~~~~~~-----e~i~i~~~dl~~~~~~~----~~~~~~~dlv~lGcP----H~Sl~E~~~la~l 300 (389)
T cd01355 234 SVAMFHIVGVTPEAPTLGLDAA-----ETVELTRADLDEARENL----NADGSEPDLVVLGCP----HASLEELRKLADL 300 (389)
T ss_pred cceeEEEeCCCCCCcccCCCcc-----eEEEecHHHHHHHHHhh----cCcccCCCEEEecCC----CCCHHHHHHHHHH
Confidence 34555556778866542 111 01156777786654332 233223446777876 4556778888887
Q ss_pred HHHHHHc-CCeEEEEcCCCC
Q 021482 282 LLNVLVS-CGSIRISFSMRT 300 (312)
Q Consensus 282 l~~l~~~-~~sl~ITtSRRT 300 (312)
+..-... +..++|++||=+
T Consensus 301 l~g~~~~~~~~~~v~t~r~v 320 (389)
T cd01355 301 LAGRRVAPSVPLYVTTSRAV 320 (389)
T ss_pred hcCCccCCCCCEEEEccHHH
Confidence 7653222 358999999966
No 53
>PRK12353 putative amino acid kinase; Reviewed
Probab=21.24 E-value=2.5e+02 Score=27.39 Aligned_cols=44 Identities=16% Similarity=0.235 Sum_probs=34.3
Q ss_pred CeEEEEEcCC---CC--CcccCHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q 021482 255 PLVVVNVGGP---TG--CCRYGSDLAKQLTAHLLNVLVSCGSIRISFSM 298 (312)
Q Consensus 255 p~vaVLIGG~---sk--~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSR 298 (312)
++++|-+||+ ++ ...++.+....++++|..+...|.++.|+.|=
T Consensus 3 ~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg 51 (314)
T PRK12353 3 KKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGN 51 (314)
T ss_pred cEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5788899883 22 24488899999999999988777788888665
No 54
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=21.19 E-value=1.1e+02 Score=30.66 Aligned_cols=45 Identities=29% Similarity=0.309 Sum_probs=34.2
Q ss_pred cchhhHHHHHHHhCCCcccceeEeeccCCCccccccccchhhhhhhHHHHHHhh
Q 021482 40 GSENQCVGLVRALGLSDKHVLYRVTRPRGGINEWLHWLPVSVHKKLEYVIRQIC 93 (312)
Q Consensus 40 G~~nQ~~GLaeALg~~~~~~~~~~~~p~~~~~~~~~~Lp~~~~~~~~~~~r~~~ 93 (312)
|-..|-++||+||.....+ .-+..|+ .-|.....+.++.|++.+-
T Consensus 140 GGQrQRVALARALA~eP~v-----LLLDEPf----~ALDa~vr~~lr~wLr~~~ 184 (345)
T COG1118 140 GGQRQRVALARALAVEPKV-----LLLDEPF----GALDAKVRKELRRWLRKLH 184 (345)
T ss_pred hHHHHHHHHHHHhhcCCCe-----EeecCCc----hhhhHHHHHHHHHHHHHHH
Confidence 6688999999999998875 4455665 5677777788888887443
No 55
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=20.99 E-value=1.6e+02 Score=26.41 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=29.6
Q ss_pred CCCcEEEecCCCccCCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCCC
Q 021482 219 PDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGC 267 (312)
Q Consensus 219 ~~~NVl~t~Galh~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~ 267 (312)
++.-|+..----...+.+.+++.-..|.. .. .-+.++|||+.+.
T Consensus 66 ~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~----~G-~~i~f~IGG~~Gl 109 (155)
T COG1576 66 KGSYVVLLDIRGKALSSEEFADFLERLRD----DG-RDISFLIGGADGL 109 (155)
T ss_pred CCCeEEEEecCCCcCChHHHHHHHHHHHh----cC-CeEEEEEeCcccC
Confidence 44455555445567788888887777643 22 5689999998663
No 56
>PF03771 SPDY: Domain of unknown function (DUF317); InterPro: IPR005523 This domain is currently found in streptomyces bacteria, in a set of bacterial proteins with no known function. Most proteins contain two copies of this domain.
Probab=20.82 E-value=1e+02 Score=22.97 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCcHHHHHHHhh
Q 021482 289 CGSIRISFSMRTPEKVLQQLLI 310 (312)
Q Consensus 289 ~~sl~ITtSRRTP~~~~~~L~~ 310 (312)
...|..+||..||.++.+.+..
T Consensus 32 ~~~W~A~F~~~TP~elvaaf~~ 53 (63)
T PF03771_consen 32 PPGWTATFTPDTPAELVAAFTA 53 (63)
T ss_pred CCeEEEEECCCCcHHHHHHHHH
Confidence 4689999999999999887753
No 57
>PRK14557 pyrH uridylate kinase; Provisional
Probab=20.73 E-value=3e+02 Score=25.89 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=30.7
Q ss_pred CeEEEEEcCCC----CCcccCHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q 021482 255 PLVVVNVGGPT----GCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSM 298 (312)
Q Consensus 255 p~vaVLIGG~s----k~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSR 298 (312)
+++++=+||.. ..+.++.+..+++++.|.++.+.|.++.|+.|=
T Consensus 5 ~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGg 52 (247)
T PRK14557 5 KRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG 52 (247)
T ss_pred cEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 46677777742 235677777888888888777666677777766
No 58
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=20.30 E-value=1.5e+02 Score=27.26 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=23.2
Q ss_pred CCcEEEEecCccHHHHHHHHHHhCC
Q 021482 143 GPLLVVASGRDTISIASSIKRLASD 167 (312)
Q Consensus 143 ~PdLvIsaGr~T~~~~~~lrr~~gg 167 (312)
.||+|||-+|....+++.|+...+-
T Consensus 29 ~PDvIiaiaRGG~~pariLsd~L~~ 53 (192)
T COG2236 29 KPDVIVAIARGGLIPARILSDFLGV 53 (192)
T ss_pred CCCEEEEEcCCceehHHHHHHHhCC
Confidence 4999999999999999999999874
No 59
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=20.24 E-value=4.1e+02 Score=25.22 Aligned_cols=44 Identities=9% Similarity=-0.019 Sum_probs=34.3
Q ss_pred CCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q 021482 252 LPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSM 298 (312)
Q Consensus 252 lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSR 298 (312)
..++++++..|+....-.|..+...+|++.|.+ .+.++.++.+.
T Consensus 179 ~~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~---~~~~ivl~g~p 222 (344)
T TIGR02201 179 VGQNYIVIQPTSRWFFKCWDNDRFSALIDALHA---RGYEVVLTSGP 222 (344)
T ss_pred CCCCEEEEeCCCCccccCCCHHHHHHHHHHHHh---CCCeEEEecCC
Confidence 367889999888778888999998888887753 46788887653
No 60
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=20.21 E-value=2.4e+02 Score=27.25 Aligned_cols=101 Identities=11% Similarity=0.059 Sum_probs=58.5
Q ss_pred CcEEEEecCccHHHHHHHHHHhCCCceEEEEcCCCCCCCCccEEeeccCCCCCCCccccccchhhhhcccCCCCCCCCcE
Q 021482 144 PLLVVASGRDTISIASSIKRLASDNVFVVQIQHPRVHLNRFDLVITPRHDYYPLTPEGQEKIPQFLRRWITPCEPPDGHV 223 (312)
Q Consensus 144 PdLvIsaGr~T~~~~~~lrr~~gg~~~~V~i~~P~~~~~~FDlVi~P~HD~~~l~~~~~~~~p~~~~~~~~~~~~~~~NV 223 (312)
.-.|||.|+=.-.++..++ .+|.+ |..-+|.......++-.+.-+|-+ +...|
T Consensus 147 tvGIiG~G~IG~~vA~~~~-~fgm~---V~~~d~~~~~~~~~~~~~~l~ell-----------------------~~sDv 199 (311)
T PRK08410 147 KWGIIGLGTIGKRVAKIAQ-AFGAK---VVYYSTSGKNKNEEYERVSLEELL-----------------------KTSDI 199 (311)
T ss_pred EEEEECCCHHHHHHHHHHh-hcCCE---EEEECCCccccccCceeecHHHHh-----------------------hcCCE
Confidence 3459999987777777775 56643 444466422211111112222222 35667
Q ss_pred EEecCCCccCCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHH
Q 021482 224 VLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLL 283 (312)
Q Consensus 224 l~t~Galh~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~ 283 (312)
++.-.+++.-|...+.+ ++|+.++..-+.|++| |.--.|+++ |.+.|.
T Consensus 200 v~lh~Plt~~T~~li~~------~~~~~Mk~~a~lIN~a---RG~vVDe~A---L~~AL~ 247 (311)
T PRK08410 200 ISIHAPLNEKTKNLIAY------KELKLLKDGAILINVG---RGGIVNEKD---LAKALD 247 (311)
T ss_pred EEEeCCCCchhhcccCH------HHHHhCCCCeEEEECC---CccccCHHH---HHHHHH
Confidence 77777776666555543 4567787778888876 555667777 555554
No 61
>PF08848 DUF1818: Domain of unknown function (DUF1818); InterPro: IPR014947 This entry represents a small family of uncharacterised cyanobacterial proteins. ; PDB: 2IT9_A 2NVN_A.
Probab=20.11 E-value=1e+02 Score=26.37 Aligned_cols=33 Identities=9% Similarity=-0.026 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHH
Q 021482 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLV 287 (312)
Q Consensus 255 p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~ 287 (312)
.-.-.||||++=.+.+++.+...+++-+.++.+
T Consensus 16 ~~f~~LIGge~WAiELT~~E~~~f~~Ll~~L~~ 48 (117)
T PF08848_consen 16 GEFCGLIGGEDWAIELTEAEFNDFCRLLQQLAE 48 (117)
T ss_dssp SSS-EEEE-SSEEEEE-HHHHHHHHHHHHHHHH
T ss_pred CCCCEEEccCchheeecHHHHHHHHHHHHHHHH
Confidence 344679999999999999999988888777764
Done!