Query 021482
Match_columns 312
No_of_seqs 133 out of 211
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 04:47:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s2u_A UDP-N-acetylglucosamine 91.9 0.64 2.2E-05 43.4 9.1 25 29-53 3-27 (365)
2 1f0k_A MURG, UDP-N-acetylgluco 77.2 39 0.0013 29.9 18.2 27 29-55 7-33 (364)
3 3tov_A Glycosyl transferase fa 53.3 62 0.0021 29.7 9.2 63 233-299 164-227 (349)
4 3fro_A GLGA glycogen synthase; 47.9 1.5E+02 0.0052 26.4 11.6 36 141-177 120-155 (439)
5 3okp_A GDP-mannose-dependent a 40.2 96 0.0033 27.3 8.1 30 28-58 4-37 (394)
6 3bv4_A Fructose-bisphosphate a 35.2 54 0.0019 31.4 5.7 72 220-298 226-300 (341)
7 1qys_A TOP7; alpha-beta, novel 30.8 76 0.0026 24.5 4.9 52 256-307 5-63 (106)
8 2jjm_A Glycosyl transferase, g 29.2 64 0.0022 29.0 5.0 17 38-54 26-42 (394)
9 2h31_A Multifunctional protein 28.2 98 0.0033 30.4 6.4 87 206-309 228-314 (425)
10 2a1f_A Uridylate kinase; PYRH, 26.5 1.1E+02 0.0037 26.8 5.9 43 255-297 9-55 (247)
11 1psw_A ADP-heptose LPS heptosy 25.9 1.4E+02 0.0048 26.3 6.7 43 253-298 179-222 (348)
12 2pc4_A 41 kDa antigen, fructos 24.9 88 0.003 30.3 5.2 69 220-297 237-307 (369)
13 3nwy_A Uridylate kinase; allos 22.9 1.8E+02 0.0063 26.5 6.9 44 254-297 50-96 (281)
14 3mmt_A Fructose-bisphosphate a 22.6 77 0.0026 30.4 4.3 69 220-297 227-296 (347)
15 3tsa_A SPNG, NDP-rhamnosyltran 22.5 37 0.0013 30.6 2.1 27 29-55 2-28 (391)
16 4amg_A Snogd; transferase, pol 22.3 43 0.0015 30.1 2.4 30 26-55 20-49 (400)
17 1ivn_A Thioesterase I; hydrola 22.1 1.8E+02 0.0063 23.1 6.1 43 255-297 64-107 (190)
18 3ek6_A Uridylate kinase; UMPK 21.6 1.9E+02 0.0066 25.4 6.6 43 255-297 10-56 (243)
19 3oti_A CALG3; calicheamicin, T 21.1 46 0.0016 30.2 2.4 29 27-55 19-47 (398)
20 1ybd_A Uridylate kinase; alpha 21.0 1.4E+02 0.0048 25.7 5.5 43 255-297 8-54 (239)
21 2jjx_A Uridylate kinase, UMP k 20.9 1.6E+02 0.0053 26.0 5.8 45 254-298 12-60 (255)
22 1xmp_A PURE, phosphoribosylami 20.4 1.4E+02 0.0047 25.9 5.1 52 253-310 10-61 (170)
23 4fzr_A SSFS6; structural genom 20.1 49 0.0017 30.0 2.4 31 25-55 12-42 (398)
24 3i53_A O-methyltransferase; CO 20.1 1.9E+02 0.0065 25.7 6.4 31 220-250 235-265 (332)
No 1
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=91.86 E-value=0.64 Score=43.37 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=21.4
Q ss_pred eEEEEEcCCCccchhhHHHHHHHhC
Q 021482 29 RRAVVIGNGYPGSENQCVGLVRALG 53 (312)
Q Consensus 29 ~~~wVLsDG~aG~~nQ~~GLaeALg 53 (312)
.+|++.+-|-.||.+-|++||++|-
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~ 27 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQ 27 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHH
Confidence 4677777788899999999999994
No 2
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=77.18 E-value=39 Score=29.91 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.7
Q ss_pred eEEEEEcCCCccchhhHHHHHHHhCCC
Q 021482 29 RRAVVIGNGYPGSENQCVGLVRALGLS 55 (312)
Q Consensus 29 ~~~wVLsDG~aG~~nQ~~GLaeALg~~ 55 (312)
+++++++.|.-||+.++..||++|...
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~ 33 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQ 33 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTT
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHc
Confidence 689999998889999999999999543
No 3
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=53.30 E-value=62 Score=29.72 Aligned_cols=63 Identities=10% Similarity=-0.069 Sum_probs=42.4
Q ss_pred CCHHHHHHHHhhchhhhC-CCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHcCCeEEEEcCCC
Q 021482 233 IDSAALRSAASAWHEEFA-PLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMR 299 (312)
Q Consensus 233 vtp~~L~~a~~~~~~~la-~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSRR 299 (312)
++++..+.+...|.+ ++ +..++++++..|+....-.|..+...++++.|.+ .|..+.++.+.-
T Consensus 164 ~~~~~~~~~~~~l~~-~g~~~~~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~---~g~~vvl~g~~~ 227 (349)
T 3tov_A 164 ICEEWRCQAQEFYSS-HGLTDTDILIGFNIGSAVPEKRWPAERFAHVADYFGR---LGYKTVFFGGPM 227 (349)
T ss_dssp CCHHHHHHHHHHHHH-TTCCTTCCEEEEECCCSSGGGCCCHHHHHHHHHHHHH---HTCEEEECCCTT
T ss_pred CCHHHHHHHHHHHHH-cCCCCCCCEEEEeCCCCCccCCCCHHHHHHHHHHHHh---CCCeEEEEeCcc
Confidence 455555555444432 22 2247889999998777778999998888887764 377888876643
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=47.94 E-value=1.5e+02 Score=26.39 Aligned_cols=36 Identities=19% Similarity=0.081 Sum_probs=25.9
Q ss_pred CCCCcEEEEecCccHHHHHHHHHHhCCCceEEEEcCC
Q 021482 141 KDGPLLVVASGRDTISIASSIKRLASDNVFVVQIQHP 177 (312)
Q Consensus 141 ~p~PdLvIsaGr~T~~~~~~lrr~~gg~~~~V~i~~P 177 (312)
...||+|++.+..+..++..+++..+.+ .++.+.+.
T Consensus 120 ~~~~Dii~~~~~~~~~~~~~~~~~~~~~-~v~~~h~~ 155 (439)
T 3fro_A 120 EPLPDVVHFHDWHTVFAGALIKKYFKIP-AVFTIHRL 155 (439)
T ss_dssp SCCCSEEEEESGGGHHHHHHHHHHHCCC-EEEEESCC
T ss_pred CCCCeEEEecchhhhhhHHHHhhccCCC-EEEEeccc
Confidence 4579999999988888888888776643 34444443
No 5
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=40.19 E-value=96 Score=27.33 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=22.4
Q ss_pred eeEEEEEcCC----CccchhhHHHHHHHhCCCccc
Q 021482 28 IRRAVVIGNG----YPGSENQCVGLVRALGLSDKH 58 (312)
Q Consensus 28 ~~~~wVLsDG----~aG~~nQ~~GLaeALg~~~~~ 58 (312)
.++|.++++. .-|.+..+..|+++| ..+++
T Consensus 4 ~mkIl~v~~~~~p~~gG~~~~~~~l~~~L-~g~~v 37 (394)
T 3okp_A 4 SRKTLVVTNDFPPRIGGIQSYLRDFIATQ-DPESI 37 (394)
T ss_dssp CCCEEEEESCCTTSCSHHHHHHHHHHTTS-CGGGE
T ss_pred CceEEEEeCccCCccchHHHHHHHHHHHh-cCCeE
Confidence 4678888874 358899999999999 33444
No 6
>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis, phosphoprotein, schiff base; HET: 13P; 1.70A {Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A* 1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A 3lge_A 3tu9_A* 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A 3dfn_A 3dfo_A 3dfp_A ...
Probab=35.25 E-value=54 Score=31.41 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=42.6
Q ss_pred CCcEEEecCCC--ccCCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHH-cCCeEEEEc
Q 021482 220 DGHVVLTTGAL--HQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLV-SCGSIRISF 296 (312)
Q Consensus 220 ~~NVl~t~Gal--h~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~-~~~sl~ITt 296 (312)
.||.+ |.|.- +..+++.++++--.-..+--+-.=|.|+.|-||- ++++|..-...++.+-. ..+.+..|+
T Consensus 226 KPnMV-~pg~~~~~~~~~e~va~~Tv~~l~rtvP~aVpgI~fLSGGq------S~eeAt~~LnA~N~~~~~~pw~lsfSy 298 (341)
T 3bv4_A 226 KPNMV-TPGHACTQKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQ------SEEEASINLNAINKCPLLKPWALTFSY 298 (341)
T ss_dssp CCCCC-CCCTTCSSCCCHHHHHHHHHHHHHTTSCTTSCEEEECCTTC------CHHHHHHHHHHHHHCCSCCCSEEEEEE
T ss_pred cCccc-cCCCcccccCCHHHHHHHHHHHHhhcCCcccCeeeecCCCC------CHHHHHHHHHHhhccCCCCCeeEEEEe
Confidence 56754 66666 7889988887654432222233348999999994 57776655555554210 133444555
Q ss_pred CC
Q 021482 297 SM 298 (312)
Q Consensus 297 SR 298 (312)
||
T Consensus 299 gR 300 (341)
T 3bv4_A 299 GR 300 (341)
T ss_dssp SH
T ss_pred hH
Confidence 55
No 7
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=30.76 E-value=76 Score=24.54 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=37.8
Q ss_pred eEEEEEcCCCCCcccC-----HHHHHHHHHHHHHHHH-cC-CeEEEEcCCCCcHHHHHH
Q 021482 256 LVVVNVGGPTGCCRYG-----SDLAKQLTAHLLNVLV-SC-GSIRISFSMRTPEKVLQQ 307 (312)
Q Consensus 256 ~vaVLIGG~sk~~~~~-----~~~a~~L~~~l~~l~~-~~-~sl~ITtSRRTP~~~~~~ 307 (312)
.+-|.|--+.++|+|+ +.+.+.....|...++ +| .++.||-.-||-.++++.
T Consensus 5 qvqvniddngknfdytytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekf 63 (106)
T 1qys_A 5 QVQVNIDDNGKNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKF 63 (106)
T ss_dssp EEEEEEECSSCEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHH
T ss_pred EEEEEecCCCcccceEEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHH
Confidence 3567888888888874 3455556666666565 56 699999999999887653
No 8
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=29.20 E-value=64 Score=28.96 Aligned_cols=17 Identities=24% Similarity=0.075 Sum_probs=13.3
Q ss_pred CccchhhHHHHHHHhCC
Q 021482 38 YPGSENQCVGLVRALGL 54 (312)
Q Consensus 38 ~aG~~nQ~~GLaeALg~ 54 (312)
.-|.+.++..||++|..
T Consensus 26 ~GG~~~~~~~la~~L~~ 42 (394)
T 2jjm_A 26 VGGSGVVGTELGKQLAE 42 (394)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 45889999999999854
No 9
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=28.20 E-value=98 Score=30.39 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=41.7
Q ss_pred hhhhhcccCCCCCCCCcEEEecCCCccCCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHH
Q 021482 206 PQFLRRWITPCEPPDGHVVLTTGALHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNV 285 (312)
Q Consensus 206 p~~~~~~~~~~~~~~~NVl~t~Galh~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l 285 (312)
+.+||+|.+..++.-.+|. +..++-..+..-.-.....+.|+|+.||.|- -+.+++.+..+..
T Consensus 228 K~~~R~~~~~~~~~l~~v~-----------~~Y~eVa~rL~i~~~~~~~~~V~Ii~gs~SD-----~~~~~~a~~~l~~- 290 (425)
T 2h31_A 228 KQSYRDLKEVTPEGLQMVK-----------KNFEWVAERVELLLKSESQCRVVVLMGSTSD-----LGHCEKIKKACGN- 290 (425)
T ss_dssp -----------CCSSSCCC-----------CCHHHHHTTGGGGGSCSCCCEEEEEESCGGG-----HHHHHHHHHHHHH-
T ss_pred HHHHHhccccchhhHHHHH-----------HHHHHHHHHhhcccCccCCCeEEEEecCccc-----HHHHHHHHHHHHH-
Confidence 5688888766555545553 1222222221111113445789999999863 2233333333332
Q ss_pred HHcCCeEEEEcCCCCcHHHHHHHh
Q 021482 286 LVSCGSIRISFSMRTPEKVLQQLL 309 (312)
Q Consensus 286 ~~~~~sl~ITtSRRTP~~~~~~L~ 309 (312)
..-...+.|..--|||+.+.+..+
T Consensus 291 ~gi~~~v~V~saHR~p~~~~~~~~ 314 (425)
T 2h31_A 291 FGIPCELRVTSAHKGPDETLRIKA 314 (425)
T ss_dssp TTCCEEEEECCTTTCHHHHHHHHH
T ss_pred cCCceEEeeeeccCCHHHHHHHHH
Confidence 111258899999999999988876
No 10
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=26.46 E-value=1.1e+02 Score=26.80 Aligned_cols=43 Identities=2% Similarity=0.125 Sum_probs=33.1
Q ss_pred CeEEEEEcCCCC----CcccCHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 021482 255 PLVVVNVGGPTG----CCRYGSDLAKQLTAHLLNVLVSCGSIRISFS 297 (312)
Q Consensus 255 p~vaVLIGG~sk----~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtS 297 (312)
.+++|=+||++= .+.++.+....++++|..+.+.|.++.|..|
T Consensus 9 k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhG 55 (247)
T 2a1f_A 9 KRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLG 55 (247)
T ss_dssp SEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 578999999642 3667888888999999987766777766664
No 11
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=25.92 E-value=1.4e+02 Score=26.35 Aligned_cols=43 Identities=14% Similarity=0.142 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCC-CCCcccCHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q 021482 253 PKPLVVVNVGGP-TGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSM 298 (312)
Q Consensus 253 p~p~vaVLIGG~-sk~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSR 298 (312)
.++.+++..|+. ...-.|..+...++++.|.+ .|..+.++.+.
T Consensus 179 ~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~---~~~~vvl~g~~ 222 (348)
T 1psw_A 179 ERPMIGFCPGAEFGPAKRWPHYHYAELAKQLID---EGYQVVLFGSA 222 (348)
T ss_dssp SSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHH---TTCEEEECCCG
T ss_pred CCcEEEEECCCCccccCCCCHHHHHHHHHHHHH---CCCeEEEEeCh
Confidence 578899999883 35567888887777777654 36788877654
No 12
>2pc4_A 41 kDa antigen, fructose-bisphosphate aldolase; invasion machinery, structu genomics, PSI, protein structure initiative; 2.40A {Plasmodium falciparum} PDB: 2eph_A 1a5c_A
Probab=24.92 E-value=88 Score=30.28 Aligned_cols=69 Identities=17% Similarity=0.112 Sum_probs=44.1
Q ss_pred CCcEEEecCCCc--cCCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 021482 220 DGHVVLTTGALH--QIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFS 297 (312)
Q Consensus 220 ~~NVl~t~Galh--~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtS 297 (312)
.||.+ +.|.-| ..+++.++.+--.-..+--+-.=|.|+.|-||- ++++|..-...++.+- ...|-+|||
T Consensus 237 Kpnmv-~~G~~~~~k~s~e~vA~~Tv~~L~rtvPpaVpgI~fLSGGq------SeeeAt~~LnamN~~~--~~PW~lsFS 307 (369)
T 2pc4_A 237 KPNMV-TAGYECTAKTTTQDVGFLTVRTLRRTVPPALPGVVFLSGGQ------SEEEASVNLNSINALG--PHPWALTFS 307 (369)
T ss_dssp CCCCC-CCCTTCSSCCCHHHHHHHHHHHHHHHCCTTSCEEEECCTTC------CHHHHHHHHHHHHHTC--CCSSEEEEE
T ss_pred CCccc-cccccccccCCHHHHHHHHHHHHHhcCCccCCeeeeCCCCC------CHHHHHHHHHHhhcCC--CCCceeEEe
Confidence 67765 556554 788998888765443333344458999999994 5778766666666542 434444444
No 13
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=22.93 E-value=1.8e+02 Score=26.45 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=35.6
Q ss_pred CCeEEEEEcCCC---CCcccCHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 021482 254 KPLVVVNVGGPT---GCCRYGSDLAKQLTAHLLNVLVSCGSIRISFS 297 (312)
Q Consensus 254 ~p~vaVLIGG~s---k~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtS 297 (312)
..+++|=+||.. +.+.++.+...+++++|.++.+.|.++.|..|
T Consensus 50 ~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~G 96 (281)
T 3nwy_A 50 YSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIG 96 (281)
T ss_dssp CSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 468999999953 44778999999999999998877877777664
No 14
>3mmt_A Fructose-bisphosphate aldolase; ssgcid, structural genomics, seattle structural GE center for infectious disease, hydrolase; HET: 2FP; 2.35A {Bartonella henselae} SCOP: c.1.10.0
Probab=22.63 E-value=77 Score=30.43 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=43.7
Q ss_pred CCcEEEecCC-CccCCHHHHHHHHhhchhhhCCCCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 021482 220 DGHVVLTTGA-LHQIDSAALRSAASAWHEEFAPLPKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFS 297 (312)
Q Consensus 220 ~~NVl~t~Ga-lh~vtp~~L~~a~~~~~~~la~lp~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtS 297 (312)
.||.+ |.|. ....+++.++.+--.-..+--+-.=|-|++|-||-| +++|..-...+++. ....|.+|||
T Consensus 227 KPnMV-~pG~~~~k~s~eevA~~Tv~~L~rtVP~avpGI~FLSGGqS------eeeAt~nLnAmN~~--~~~PW~LsFS 296 (347)
T 3mmt_A 227 KPNMV-IDGKDARIASVEEVAEKTVHVLKQTVPAAVPGIAFLSGGQT------DEEATAHLSAMNAL--GALPWKLTFS 296 (347)
T ss_dssp CCCCS-CCCTTSCCCCHHHHHHHHHHHHHHHSCTTSCEEEECCTTCC------HHHHHHHHHHHTTS--CCCSSEEEEE
T ss_pred ccccc-cCCCCCCcCCHHHHHHHHHHHHHhhCCcccCcceecCCCCC------HHHHHHHHHHHhcC--CCCCeeeEec
Confidence 57754 5565 677899998887655333333444578999999964 66654444444432 2457777776
No 15
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=22.46 E-value=37 Score=30.62 Aligned_cols=27 Identities=33% Similarity=0.295 Sum_probs=24.1
Q ss_pred eEEEEEcCCCccchhhHHHHHHHhCCC
Q 021482 29 RRAVVIGNGYPGSENQCVGLVRALGLS 55 (312)
Q Consensus 29 ~~~wVLsDG~aG~~nQ~~GLaeALg~~ 55 (312)
+|+.+++.+..||.+.+..|+++|...
T Consensus 2 MrIl~~~~~~~gh~~~~~~la~~L~~~ 28 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMVPLCWALQAS 28 (391)
T ss_dssp CEEEEECCSCHHHHHTTHHHHHHHHHT
T ss_pred cEEEEEcCCCcchhhhHHHHHHHHHHC
Confidence 588999999999999999999999543
No 16
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=22.27 E-value=43 Score=30.14 Aligned_cols=30 Identities=23% Similarity=0.007 Sum_probs=25.9
Q ss_pred cceeEEEEEcCCCccchhhHHHHHHHhCCC
Q 021482 26 SVIRRAVVIGNGYPGSENQCVGLVRALGLS 55 (312)
Q Consensus 26 ~~~~~~wVLsDG~aG~~nQ~~GLaeALg~~ 55 (312)
...+||++++-+-.||.+-++.||++|-..
T Consensus 20 ~~~MRIL~~~~p~~GHv~P~l~LA~~L~~r 49 (400)
T 4amg_A 20 FQSMRALFITSPGLSHILPTVPLAQALRAL 49 (400)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHT
T ss_pred CCCCeEEEECCCchhHHHHHHHHHHHHHHC
Confidence 345899999999999999999999999543
No 17
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=22.06 E-value=1.8e+02 Score=23.05 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHH-cCCeEEEEcC
Q 021482 255 PLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLV-SCGSIRISFS 297 (312)
Q Consensus 255 p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~-~~~sl~ITtS 297 (312)
..++|.+|.+.-...++.++..+-.+.+.+.++ .+..+.+.+.
T Consensus 64 d~Vii~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~~ 107 (190)
T 1ivn_A 64 RWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQI 107 (190)
T ss_dssp SEEEEECCTTTTSSSCCHHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CEEEEEeeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 456666777665555666665444444444444 4677776653
No 18
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=21.58 E-value=1.9e+02 Score=25.37 Aligned_cols=43 Identities=5% Similarity=0.157 Sum_probs=33.5
Q ss_pred CeEEEEEcCCCC----CcccCHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 021482 255 PLVVVNVGGPTG----CCRYGSDLAKQLTAHLLNVLVSCGSIRISFS 297 (312)
Q Consensus 255 p~vaVLIGG~sk----~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtS 297 (312)
.+++|=+||..= .+.++.+...+++++|.++.+.|..+.|..|
T Consensus 10 ~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~g 56 (243)
T 3ek6_A 10 RRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIG 56 (243)
T ss_dssp SEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred cEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 578888999532 3678889999999999988777777777665
No 19
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=21.10 E-value=46 Score=30.25 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=25.6
Q ss_pred ceeEEEEEcCCCccchhhHHHHHHHhCCC
Q 021482 27 VIRRAVVIGNGYPGSENQCVGLVRALGLS 55 (312)
Q Consensus 27 ~~~~~wVLsDG~aG~~nQ~~GLaeALg~~ 55 (312)
..+||.+++.+-.||.+.++.||++|...
T Consensus 19 ~~MrIl~~~~~~~Ghv~~~~~La~~L~~~ 47 (398)
T 3oti_A 19 RHMRVLFVSSPGIGHLFPLIQLAWGFRTA 47 (398)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHT
T ss_pred hcCEEEEEcCCCcchHhHHHHHHHHHHHC
Confidence 35799999999999999999999999543
No 20
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=21.04 E-value=1.4e+02 Score=25.67 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=34.0
Q ss_pred CeEEEEEcCCCC----CcccCHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 021482 255 PLVVVNVGGPTG----CCRYGSDLAKQLTAHLLNVLVSCGSIRISFS 297 (312)
Q Consensus 255 p~vaVLIGG~sk----~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtS 297 (312)
.+++|=+||++= .+.++.+...+++++|..+.+.|.++.|..|
T Consensus 8 ~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~G 54 (239)
T 1ybd_A 8 KRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVG 54 (239)
T ss_dssp SEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 578999999642 3567888888999999988767778877776
No 21
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=20.85 E-value=1.6e+02 Score=25.96 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCCC----CcccCHHHHHHHHHHHHHHHHcCCeEEEEcCC
Q 021482 254 KPLVVVNVGGPTG----CCRYGSDLAKQLTAHLLNVLVSCGSIRISFSM 298 (312)
Q Consensus 254 ~p~vaVLIGG~sk----~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSR 298 (312)
.++++|=+||.+= .+.++.+....+++.|..+.+.|.++.|..|=
T Consensus 12 ~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~Gg 60 (255)
T 2jjx_A 12 YKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG 60 (255)
T ss_dssp CSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred CCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECc
Confidence 4568888888642 36677888888888888776566677776665
No 22
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=20.44 E-value=1.4e+02 Score=25.86 Aligned_cols=52 Identities=21% Similarity=0.124 Sum_probs=35.1
Q ss_pred CCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHHHHcCCeEEEEcCCCCcHHHHHHHhh
Q 021482 253 PKPLVVVNVGGPTGCCRYGSDLAKQLTAHLLNVLVSCGSIRISFSMRTPEKVLQQLLI 310 (312)
Q Consensus 253 p~p~vaVLIGG~sk~~~~~~~~a~~L~~~l~~l~~~~~sl~ITtSRRTP~~~~~~L~~ 310 (312)
-+|+++|+.||+|- -+.+++.+..+.+ ..-...+.|..--|||+++.+..++
T Consensus 10 ~~~~V~IimGS~SD-----~~v~~~a~~~L~~-~Gi~~dv~V~SaHR~p~~l~~~~~~ 61 (170)
T 1xmp_A 10 MKSLVGVIMGSTSD-----WETMKYACDILDE-LNIPYEKKVVSAHRTPDYMFEYAET 61 (170)
T ss_dssp -CCSEEEEESSGGG-----HHHHHHHHHHHHH-TTCCEEEEECCTTTSHHHHHHHHHH
T ss_pred CCCcEEEEECcHHH-----HHHHHHHHHHHHH-cCCCEEEEEEeccCCHHHHHHHHHH
Confidence 47999999999863 3333333333332 2122588999999999999988764
No 23
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=20.14 E-value=49 Score=29.99 Aligned_cols=31 Identities=26% Similarity=0.108 Sum_probs=25.3
Q ss_pred ccceeEEEEEcCCCccchhhHHHHHHHhCCC
Q 021482 25 YSVIRRAVVIGNGYPGSENQCVGLVRALGLS 55 (312)
Q Consensus 25 ~~~~~~~wVLsDG~aG~~nQ~~GLaeALg~~ 55 (312)
....+||.+++.+..||.+.+..||++|...
T Consensus 12 ~~~~MrIl~~~~~~~gh~~~~~~La~~L~~~ 42 (398)
T 4fzr_A 12 RGSHMRILVIAGCSEGFVMPLVPLSWALRAA 42 (398)
T ss_dssp ---CCEEEEECCSSHHHHGGGHHHHHHHHHT
T ss_pred CCCceEEEEEcCCCcchHHHHHHHHHHHHHC
Confidence 3446799999999999999999999999543
No 24
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=20.05 E-value=1.9e+02 Score=25.71 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=21.5
Q ss_pred CCcEEEecCCCccCCHHHHHHHHhhchhhhC
Q 021482 220 DGHVVLTTGALHQIDSAALRSAASAWHEEFA 250 (312)
Q Consensus 220 ~~NVl~t~Galh~vtp~~L~~a~~~~~~~la 250 (312)
+-.++.....+|.++++...+.-.+....+.
T Consensus 235 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~ 265 (332)
T 3i53_A 235 GAGGYVLSAVLHDWDDLSAVAILRRCAEAAG 265 (332)
T ss_dssp SCSEEEEESCGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEehhhccCCHHHHHHHHHHHHHhcC
Confidence 5667777888888888766666555555553
Done!