Query 021484
Match_columns 312
No_of_seqs 366 out of 2002
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 03:20:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.7E-42 3.7E-47 271.0 20.1 249 1-307 139-473 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.6E-39 5.7E-44 255.9 17.9 225 27-297 214-442 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-37 2.9E-42 246.2 13.4 197 28-260 259-458 (459)
4 KOG0263 Transcription initiati 100.0 8.4E-37 1.8E-41 258.9 18.1 204 27-266 448-653 (707)
5 KOG0271 Notchless-like WD40 re 100.0 1.7E-35 3.7E-40 231.9 20.8 238 26-297 111-400 (480)
6 KOG0315 G-protein beta subunit 100.0 1.2E-33 2.5E-38 209.8 20.5 220 1-265 63-291 (311)
7 KOG0279 G protein beta subunit 100.0 1.5E-32 3.4E-37 206.9 23.8 240 27-298 12-266 (315)
8 KOG0279 G protein beta subunit 100.0 5.4E-33 1.2E-37 209.4 19.5 203 26-264 59-264 (315)
9 KOG0645 WD40 repeat protein [G 100.0 4.7E-31 1E-35 198.2 23.9 206 27-262 11-225 (312)
10 KOG0281 Beta-TrCP (transducin 100.0 1.2E-32 2.6E-37 213.8 15.4 248 1-302 219-485 (499)
11 KOG0286 G-protein beta subunit 100.0 4.6E-31 1E-35 200.3 23.6 253 27-310 52-321 (343)
12 KOG0263 Transcription initiati 100.0 5.8E-32 1.3E-36 229.7 16.9 246 30-297 378-652 (707)
13 KOG0273 Beta-transducin family 100.0 3.7E-31 7.9E-36 212.6 20.4 214 30-264 235-484 (524)
14 KOG0266 WD40 repeat-containing 100.0 1E-30 2.2E-35 225.6 24.5 236 29-297 158-412 (456)
15 KOG0286 G-protein beta subunit 100.0 1.3E-30 2.8E-35 197.8 21.7 223 1-264 79-305 (343)
16 KOG0284 Polyadenylation factor 100.0 7.4E-32 1.6E-36 213.0 14.8 229 30-294 96-337 (464)
17 KOG0265 U5 snRNP-specific prot 100.0 7.3E-31 1.6E-35 199.8 19.2 235 26-295 43-297 (338)
18 KOG0285 Pleiotropic regulator 100.0 2.3E-31 4.9E-36 207.2 16.4 237 27-300 148-395 (460)
19 KOG0284 Polyadenylation factor 100.0 1.5E-31 3.3E-36 211.3 14.8 200 28-262 136-337 (464)
20 KOG0291 WD40-repeat-containing 100.0 2.6E-30 5.6E-35 218.6 22.7 201 27-263 347-551 (893)
21 KOG0266 WD40 repeat-containing 100.0 5.6E-30 1.2E-34 221.0 24.5 206 27-267 200-414 (456)
22 KOG0315 G-protein beta subunit 100.0 1.4E-29 3.1E-34 188.2 21.7 251 1-298 22-292 (311)
23 KOG0276 Vesicle coat complex C 100.0 3.1E-30 6.8E-35 214.0 17.7 218 1-263 37-258 (794)
24 KOG0319 WD40-repeat-containing 100.0 2.7E-30 5.9E-35 217.9 17.6 243 27-292 362-617 (775)
25 KOG0295 WD40 repeat-containing 100.0 5.1E-30 1.1E-34 199.9 17.7 198 27-260 190-404 (406)
26 KOG0273 Beta-transducin family 100.0 1E-29 2.2E-34 204.4 19.7 213 29-262 275-523 (524)
27 KOG0319 WD40-repeat-containing 100.0 8.3E-30 1.8E-34 215.0 17.4 207 28-260 409-617 (775)
28 KOG0645 WD40 repeat protein [G 100.0 3.7E-28 8E-33 182.7 23.3 198 28-262 59-261 (312)
29 PTZ00421 coronin; Provisional 100.0 3.1E-28 6.8E-33 209.7 25.8 212 27-265 72-293 (493)
30 KOG0282 mRNA splicing factor [ 100.0 5.3E-30 1.1E-34 206.6 13.4 241 24-298 208-466 (503)
31 KOG0292 Vesicle coat complex C 100.0 5.6E-29 1.2E-33 214.0 18.5 220 1-267 33-285 (1202)
32 PTZ00420 coronin; Provisional 100.0 1.2E-27 2.5E-32 207.3 25.8 211 27-264 71-295 (568)
33 KOG0295 WD40 repeat-containing 100.0 6.7E-29 1.5E-33 193.7 16.1 236 27-297 105-367 (406)
34 KOG0313 Microtubule binding pr 100.0 9.4E-28 2E-32 188.3 22.4 251 28-305 142-409 (423)
35 KOG0316 Conserved WD40 repeat- 100.0 4.5E-28 9.7E-33 178.9 19.0 232 28-298 15-261 (307)
36 KOG0285 Pleiotropic regulator 100.0 3E-28 6.5E-33 189.9 18.6 218 1-267 175-394 (460)
37 KOG0640 mRNA cleavage stimulat 100.0 2.3E-28 4.9E-33 187.4 16.0 221 28-267 110-340 (430)
38 KOG0275 Conserved WD40 repeat- 100.0 1.4E-28 2.9E-33 189.9 14.1 243 28-297 211-470 (508)
39 PLN00181 protein SPA1-RELATED; 100.0 8.8E-27 1.9E-31 215.2 27.5 198 30-263 532-739 (793)
40 KOG0282 mRNA splicing factor [ 100.0 6.9E-29 1.5E-33 200.2 11.5 214 1-260 239-503 (503)
41 KOG0316 Conserved WD40 repeat- 100.0 2.7E-27 5.8E-32 174.8 18.2 202 27-265 56-260 (307)
42 cd00200 WD40 WD40 domain, foun 100.0 2.1E-26 4.4E-31 188.0 25.4 217 1-264 33-251 (289)
43 KOG0277 Peroxisomal targeting 100.0 1.5E-27 3.1E-32 178.0 16.7 202 30-264 60-267 (311)
44 KOG0276 Vesicle coat complex C 100.0 1.2E-27 2.6E-32 198.7 17.5 180 1-224 79-261 (794)
45 PLN00181 protein SPA1-RELATED; 100.0 1.9E-26 4.2E-31 212.9 27.5 236 28-294 481-738 (793)
46 KOG0296 Angio-associated migra 100.0 2.7E-27 5.9E-32 184.9 18.1 219 27-266 61-360 (399)
47 cd00200 WD40 WD40 domain, foun 100.0 5.6E-26 1.2E-30 185.4 26.7 233 28-296 7-251 (289)
48 KOG0318 WD40 repeat stress pro 100.0 2.9E-26 6.2E-31 187.0 24.2 234 17-267 177-565 (603)
49 KOG0281 Beta-TrCP (transducin 100.0 5.5E-28 1.2E-32 187.9 13.5 225 29-299 196-433 (499)
50 KOG0283 WD40 repeat-containing 100.0 5.1E-27 1.1E-31 201.2 20.6 248 28-296 265-578 (712)
51 KOG0318 WD40 repeat stress pro 100.0 2E-26 4.3E-31 187.9 22.5 222 25-264 54-352 (603)
52 KOG0292 Vesicle coat complex C 100.0 8.1E-27 1.8E-31 200.8 20.5 230 30-295 9-281 (1202)
53 KOG0277 Peroxisomal targeting 100.0 2.3E-27 5E-32 177.0 14.8 200 28-260 102-307 (311)
54 PTZ00421 coronin; Provisional 100.0 3.3E-26 7.1E-31 197.2 24.2 251 32-297 22-293 (493)
55 KOG0291 WD40-repeat-containing 99.9 1.3E-25 2.7E-30 190.4 23.4 230 31-296 308-552 (893)
56 KOG0265 U5 snRNP-specific prot 99.9 6.1E-26 1.3E-30 173.1 19.3 201 27-264 87-298 (338)
57 KOG0264 Nucleosome remodeling 99.9 2.5E-26 5.3E-31 184.2 17.9 237 1-262 149-404 (422)
58 KOG0274 Cdc4 and related F-box 99.9 1.2E-25 2.6E-30 194.1 22.5 228 27-297 246-485 (537)
59 KOG0305 Anaphase promoting com 99.9 2.2E-25 4.7E-30 186.3 21.5 249 1-296 199-463 (484)
60 KOG0269 WD40 repeat-containing 99.9 1.1E-26 2.4E-31 197.2 13.7 223 1-264 112-342 (839)
61 KOG0264 Nucleosome remodeling 99.9 4.2E-26 9.1E-31 182.9 15.9 219 29-263 123-348 (422)
62 PTZ00420 coronin; Provisional 99.9 7.7E-25 1.7E-29 189.8 24.4 221 49-296 50-295 (568)
63 KOG0313 Microtubule binding pr 99.9 1.6E-25 3.5E-30 175.8 17.9 210 28-260 191-416 (423)
64 KOG0310 Conserved WD40 repeat- 99.9 1.1E-25 2.5E-30 181.9 17.4 229 30-297 68-302 (487)
65 KOG0268 Sof1-like rRNA process 99.9 4E-26 8.6E-31 178.3 13.4 221 26-266 62-349 (433)
66 KOG0275 Conserved WD40 repeat- 99.9 8.9E-27 1.9E-31 179.9 9.3 222 1-260 237-507 (508)
67 KOG0306 WD40-repeat-containing 99.9 1.4E-25 3E-30 190.1 17.2 211 28-262 452-664 (888)
68 KOG0306 WD40-repeat-containing 99.9 1.4E-24 3.1E-29 184.1 21.8 255 1-292 396-662 (888)
69 KOG0293 WD40 repeat-containing 99.9 7.1E-26 1.5E-30 179.7 13.1 179 28-221 267-514 (519)
70 KOG0278 Serine/threonine kinas 99.9 4.5E-25 9.8E-30 164.5 15.1 161 27-224 140-301 (334)
71 KOG0289 mRNA splicing factor [ 99.9 2E-24 4.2E-29 172.6 19.3 202 26-260 257-460 (506)
72 KOG0293 WD40 repeat-containing 99.9 7.1E-24 1.5E-28 168.5 19.9 250 28-310 222-486 (519)
73 KOG0973 Histone transcription 99.9 2.5E-24 5.5E-29 189.4 19.1 258 29-297 12-358 (942)
74 KOG0296 Angio-associated migra 99.9 2E-24 4.4E-29 168.9 16.3 231 27-262 103-398 (399)
75 KOG1407 WD40 repeat protein [F 99.9 1.1E-23 2.3E-28 158.0 19.3 219 27-282 61-281 (313)
76 KOG0973 Histone transcription 99.9 5.7E-24 1.2E-28 187.2 20.4 217 28-264 67-357 (942)
77 KOG0308 Conserved WD40 repeat- 99.9 1.1E-24 2.3E-29 182.0 15.1 218 29-270 72-293 (735)
78 KOG0305 Anaphase promoting com 99.9 5.5E-24 1.2E-28 177.9 18.4 216 1-264 241-463 (484)
79 KOG0772 Uncharacterized conser 99.9 7.1E-24 1.5E-28 172.9 18.2 264 1-291 191-484 (641)
80 KOG0274 Cdc4 and related F-box 99.9 4.9E-24 1.1E-28 184.2 18.3 211 1-267 273-487 (537)
81 KOG0641 WD40 repeat protein [G 99.9 2.1E-22 4.4E-27 148.5 23.7 205 28-264 87-305 (350)
82 KOG0294 WD40 repeat-containing 99.9 3E-23 6.6E-28 159.5 19.3 201 26-264 39-283 (362)
83 KOG0772 Uncharacterized conser 99.9 5.4E-24 1.2E-28 173.5 15.9 226 27-269 164-401 (641)
84 KOG0269 WD40 repeat-containing 99.9 1.4E-24 3E-29 184.6 12.9 206 32-267 89-301 (839)
85 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-22 2.7E-27 156.3 22.2 217 11-262 81-303 (311)
86 KOG0643 Translation initiation 99.9 1.3E-22 2.9E-27 152.7 21.6 201 28-265 8-223 (327)
87 KOG0302 Ribosome Assembly prot 99.9 2E-23 4.3E-28 164.1 17.5 166 27-221 208-379 (440)
88 KOG1446 Histone H3 (Lys4) meth 99.9 3.3E-22 7.1E-27 154.0 23.8 233 30-299 14-267 (311)
89 KOG0289 mRNA splicing factor [ 99.9 4.3E-23 9.3E-28 165.0 19.2 200 28-261 301-505 (506)
90 KOG0283 WD40 repeat-containing 99.9 1.9E-23 4.2E-28 179.4 18.2 202 24-263 363-577 (712)
91 KOG1332 Vesicle coat complex C 99.9 2.1E-23 4.5E-28 155.1 15.6 235 28-292 9-284 (299)
92 KOG0300 WD40 repeat-containing 99.9 8.8E-24 1.9E-28 163.0 14.1 220 27-267 145-391 (481)
93 KOG4283 Transcription-coupled 99.9 2.8E-23 6E-28 158.6 15.9 215 27-264 40-278 (397)
94 KOG0270 WD40 repeat-containing 99.9 7.6E-23 1.6E-27 163.9 18.9 205 27-264 240-451 (463)
95 KOG0267 Microtubule severing p 99.9 1.8E-24 3.9E-29 182.7 10.0 201 29-265 27-229 (825)
96 KOG0267 Microtubule severing p 99.9 1.1E-24 2.4E-29 184.0 8.1 191 27-253 67-259 (825)
97 KOG0310 Conserved WD40 repeat- 99.9 4E-23 8.7E-28 167.3 16.4 198 28-261 108-308 (487)
98 KOG0640 mRNA cleavage stimulat 99.9 7.1E-23 1.5E-27 157.4 15.8 231 28-291 170-423 (430)
99 KOG2096 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 151.4 21.9 214 27-262 83-308 (420)
100 KOG0288 WD40 repeat protein Ti 99.9 1.5E-23 3.3E-28 166.5 12.0 211 29-259 218-458 (459)
101 KOG1332 Vesicle coat complex C 99.9 1.4E-22 3.1E-27 150.7 16.4 205 27-261 53-285 (299)
102 KOG0647 mRNA export protein (c 99.9 1.1E-21 2.3E-26 150.3 21.5 198 29-263 26-229 (347)
103 KOG0278 Serine/threonine kinas 99.9 4.3E-23 9.4E-28 154.0 13.0 233 27-298 56-301 (334)
104 KOG0299 U3 snoRNP-associated p 99.9 1.6E-22 3.5E-27 162.8 17.0 215 28-264 140-358 (479)
105 KOG0646 WD40 repeat protein [G 99.9 3.8E-22 8.3E-27 160.8 18.7 209 30-265 81-310 (476)
106 KOG0308 Conserved WD40 repeat- 99.9 3.2E-22 6.9E-27 167.4 18.1 206 29-261 116-326 (735)
107 KOG0643 Translation initiation 99.9 4.1E-21 8.8E-26 144.8 22.0 196 27-253 49-252 (327)
108 KOG0300 WD40 repeat-containing 99.9 1.6E-22 3.5E-27 156.0 14.8 215 26-264 186-430 (481)
109 KOG0301 Phospholipase A2-activ 99.9 3.6E-22 7.7E-27 168.2 17.7 227 29-297 56-291 (745)
110 KOG0288 WD40 repeat protein Ti 99.9 2E-23 4.3E-28 165.8 9.3 235 28-300 173-423 (459)
111 KOG0639 Transducin-like enhanc 99.9 8E-23 1.7E-27 166.4 12.3 222 1-264 442-665 (705)
112 KOG0294 WD40 repeat-containing 99.9 4.4E-22 9.6E-27 153.2 15.4 195 1-223 65-284 (362)
113 KOG1407 WD40 repeat protein [F 99.9 3.6E-21 7.8E-26 144.6 19.5 235 27-297 17-264 (313)
114 KOG0299 U3 snoRNP-associated p 99.9 5.4E-21 1.2E-25 154.0 18.5 199 28-264 200-412 (479)
115 KOG0303 Actin-binding protein 99.9 8.5E-21 1.8E-25 150.3 17.1 210 27-265 78-297 (472)
116 KOG1274 WD40 repeat protein [G 99.9 7.5E-20 1.6E-24 158.9 24.3 232 28-295 11-263 (933)
117 KOG0302 Ribosome Assembly prot 99.9 7E-21 1.5E-25 149.9 15.5 222 27-264 148-380 (440)
118 KOG4328 WD40 protein [Function 99.9 7.8E-21 1.7E-25 153.1 16.0 204 29-261 185-398 (498)
119 KOG0647 mRNA export protein (c 99.9 1.4E-20 3.1E-25 144.2 16.4 204 1-234 52-296 (347)
120 KOG4283 Transcription-coupled 99.9 3.5E-20 7.6E-25 141.7 18.3 257 1-293 68-364 (397)
121 KOG0301 Phospholipase A2-activ 99.9 8.6E-21 1.9E-25 160.0 16.5 191 27-262 98-288 (745)
122 KOG2048 WD40 repeat protein [G 99.9 4.2E-20 9.1E-25 155.5 20.0 202 30-265 25-236 (691)
123 KOG1334 WD40 repeat protein [G 99.9 1.2E-21 2.5E-26 159.0 10.1 244 1-255 257-502 (559)
124 KOG1273 WD40 repeat protein [G 99.9 1.7E-19 3.6E-24 139.2 20.9 214 33-263 26-281 (405)
125 KOG0268 Sof1-like rRNA process 99.9 3.5E-21 7.6E-26 150.9 10.6 176 1-221 169-346 (433)
126 KOG0646 WD40 repeat protein [G 99.9 2.4E-20 5.2E-25 150.6 15.3 186 1-224 105-311 (476)
127 KOG0641 WD40 repeat protein [G 99.9 2.8E-19 6.2E-24 132.0 19.4 202 27-262 133-349 (350)
128 KOG1274 WD40 repeat protein [G 99.9 1.1E-19 2.4E-24 157.9 19.7 197 29-262 55-262 (933)
129 KOG1007 WD repeat protein TSSC 99.8 1.3E-19 2.7E-24 138.3 17.2 212 28-263 61-290 (370)
130 KOG2445 Nuclear pore complex c 99.8 9E-20 1.9E-24 140.2 16.4 212 27-262 10-318 (361)
131 KOG0639 Transducin-like enhanc 99.8 1.6E-20 3.5E-25 153.1 12.2 213 1-261 489-703 (705)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 4.8E-18 1E-22 140.3 26.0 248 1-297 13-282 (300)
133 KOG1036 Mitotic spindle checkp 99.8 3.7E-19 8.1E-24 136.8 17.5 202 29-250 53-292 (323)
134 KOG0270 WD40 repeat-containing 99.8 1.3E-19 2.7E-24 145.6 15.5 216 32-266 175-408 (463)
135 KOG0321 WD40 repeat-containing 99.8 4.5E-19 9.6E-24 148.5 18.8 257 27-299 97-396 (720)
136 KOG0307 Vesicle coat complex C 99.8 1.6E-20 3.5E-25 166.6 10.7 207 28-265 114-330 (1049)
137 KOG1007 WD repeat protein TSSC 99.8 2.7E-19 5.9E-24 136.5 15.4 206 29-264 122-363 (370)
138 KOG1539 WD repeat protein [Gen 99.8 2.8E-19 6E-24 153.9 16.7 197 31-261 449-647 (910)
139 KOG1036 Mitotic spindle checkp 99.8 3.9E-18 8.4E-23 131.3 20.9 153 30-222 13-165 (323)
140 KOG2106 Uncharacterized conser 99.8 4.2E-18 9.1E-23 139.2 21.9 258 1-291 224-518 (626)
141 KOG4378 Nuclear protein COP1 [ 99.8 4.4E-19 9.6E-24 144.6 15.8 253 1-295 14-281 (673)
142 KOG1408 WD40 repeat protein [F 99.8 6E-19 1.3E-23 149.8 16.9 217 29-263 458-714 (1080)
143 KOG1034 Transcriptional repres 99.8 1.7E-19 3.7E-24 139.8 11.8 218 27-261 132-382 (385)
144 KOG0290 Conserved WD40 repeat- 99.8 9.5E-19 2.1E-23 133.7 15.6 169 27-222 147-320 (364)
145 KOG0321 WD40 repeat-containing 99.8 5.9E-19 1.3E-23 147.8 15.8 244 1-264 124-393 (720)
146 KOG0303 Actin-binding protein 99.8 8.2E-19 1.8E-23 139.2 15.6 207 82-300 75-290 (472)
147 KOG0650 WD40 repeat nucleolar 99.8 2E-19 4.3E-24 149.6 12.4 228 27-259 397-732 (733)
148 KOG0307 Vesicle coat complex C 99.8 1.4E-19 3.1E-24 160.6 12.0 210 31-265 65-287 (1049)
149 KOG1539 WD repeat protein [Gen 99.8 1.2E-17 2.5E-22 144.1 22.9 141 149-291 450-645 (910)
150 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 9E-18 2E-22 138.6 21.8 198 33-267 75-284 (300)
151 KOG1063 RNA polymerase II elon 99.8 1.5E-18 3.3E-23 146.6 16.4 222 27-264 358-650 (764)
152 KOG1273 WD40 repeat protein [G 99.8 5.9E-19 1.3E-23 136.2 12.4 233 1-264 47-324 (405)
153 KOG4328 WD40 protein [Function 99.8 1E-17 2.2E-22 135.3 19.2 205 28-264 232-452 (498)
154 KOG1034 Transcriptional repres 99.8 2.3E-17 4.9E-22 128.2 20.3 239 28-298 36-341 (385)
155 KOG2919 Guanine nucleotide-bin 99.8 4E-18 8.7E-23 132.1 16.0 205 30-264 104-329 (406)
156 KOG2055 WD40 repeat protein [G 99.8 1.6E-18 3.5E-23 140.0 14.4 218 2-262 283-512 (514)
157 KOG1587 Cytoplasmic dynein int 99.8 3.8E-17 8.2E-22 140.9 22.6 269 1-297 224-519 (555)
158 KOG2055 WD40 repeat protein [G 99.8 1E-17 2.2E-22 135.4 17.5 202 30-262 213-417 (514)
159 KOG1445 Tumor-specific antigen 99.8 2.3E-18 5E-23 144.5 13.9 206 30-264 627-846 (1012)
160 KOG0642 Cell-cycle nuclear pro 99.8 3.6E-18 7.8E-23 141.2 14.7 218 29-264 293-563 (577)
161 KOG2096 WD40 repeat protein [G 99.8 4.8E-17 1E-21 126.0 19.7 233 32-292 134-400 (420)
162 KOG4378 Nuclear protein COP1 [ 99.8 7.2E-18 1.6E-22 137.6 14.8 199 34-267 83-285 (673)
163 KOG1445 Tumor-specific antigen 99.8 7.6E-18 1.7E-22 141.4 15.0 197 44-263 592-799 (1012)
164 KOG2106 Uncharacterized conser 99.8 1E-16 2.2E-21 131.3 20.9 233 30-298 200-481 (626)
165 KOG2445 Nuclear pore complex c 99.8 4.8E-17 1E-21 125.3 17.9 203 1-220 37-318 (361)
166 KOG0642 Cell-cycle nuclear pro 99.8 2E-17 4.3E-22 136.9 16.1 186 27-222 341-563 (577)
167 KOG1408 WD40 repeat protein [F 99.8 7.7E-18 1.7E-22 143.1 13.8 176 28-220 499-713 (1080)
168 KOG2048 WD40 repeat protein [G 99.8 1.3E-16 2.9E-21 134.7 20.8 216 2-263 93-320 (691)
169 KOG1188 WD40 repeat protein [G 99.8 5.4E-17 1.2E-21 126.7 14.9 192 44-266 41-246 (376)
170 KOG0649 WD40 repeat protein [G 99.7 5.3E-16 1.1E-20 116.0 18.9 224 32-270 12-243 (325)
171 KOG1188 WD40 repeat protein [G 99.7 2.9E-16 6.2E-21 122.7 17.5 166 27-222 67-244 (376)
172 KOG1009 Chromatin assembly com 99.7 4.8E-17 1E-21 129.6 12.1 180 30-220 13-195 (434)
173 KOG0644 Uncharacterized conser 99.7 9.9E-18 2.1E-22 144.6 8.8 231 27-296 187-470 (1113)
174 KOG2919 Guanine nucleotide-bin 99.7 1.3E-15 2.9E-20 118.3 19.6 244 32-297 51-331 (406)
175 KOG0771 Prolactin regulatory e 99.7 8.6E-17 1.9E-21 128.9 13.0 196 34-263 148-355 (398)
176 KOG2110 Uncharacterized conser 99.7 2.4E-15 5.3E-20 118.8 20.7 159 30-223 87-251 (391)
177 KOG2394 WD40 protein DMR-N9 [G 99.7 2.9E-16 6.3E-21 129.5 15.6 152 30-200 219-384 (636)
178 KOG1063 RNA polymerase II elon 99.7 6.3E-16 1.4E-20 131.0 17.8 205 27-262 522-763 (764)
179 PF08662 eIF2A: Eukaryotic tra 99.7 2.4E-15 5.3E-20 114.9 17.7 154 34-224 9-183 (194)
180 KOG0322 G-protein beta subunit 99.7 3.7E-16 8E-21 118.1 11.4 171 29-219 149-322 (323)
181 KOG1587 Cytoplasmic dynein int 99.7 4E-15 8.7E-20 128.5 19.1 237 1-263 267-517 (555)
182 KOG1538 Uncharacterized conser 99.7 1.5E-15 3.3E-20 128.6 15.3 224 27-291 50-290 (1081)
183 COG2319 FOG: WD40 repeat [Gene 99.7 2E-14 4.3E-19 123.9 22.8 201 28-265 153-362 (466)
184 KOG1524 WD40 repeat-containing 99.7 1.3E-15 2.9E-20 125.8 14.2 182 27-258 101-282 (737)
185 PRK01742 tolB translocation pr 99.7 7.3E-15 1.6E-19 126.8 18.7 191 29-262 202-401 (429)
186 KOG3881 Uncharacterized conser 99.7 5.2E-15 1.1E-19 117.7 16.1 170 31-224 149-324 (412)
187 KOG1517 Guanine nucleotide bin 99.7 6E-15 1.3E-19 130.8 17.2 236 1-266 1088-1337(1387)
188 KOG0290 Conserved WD40 repeat- 99.7 1E-14 2.2E-19 111.9 16.2 212 28-264 94-320 (364)
189 KOG1310 WD40 repeat protein [G 99.6 3.3E-15 7.1E-20 123.8 12.7 169 27-220 47-231 (758)
190 KOG1523 Actin-related protein 99.6 2.2E-14 4.8E-19 111.4 16.4 206 30-264 10-238 (361)
191 KOG0322 G-protein beta subunit 99.6 7.8E-15 1.7E-19 111.0 13.6 239 1-261 37-322 (323)
192 PRK11028 6-phosphogluconolacto 99.6 2.4E-13 5.3E-18 113.8 24.2 202 31-264 35-260 (330)
193 KOG1524 WD40 repeat-containing 99.6 1.1E-14 2.3E-19 120.5 15.2 208 44-292 76-284 (737)
194 KOG2110 Uncharacterized conser 99.6 1.1E-13 2.4E-18 109.5 19.6 194 32-263 48-249 (391)
195 KOG2139 WD40 repeat protein [G 99.6 5.1E-13 1.1E-17 105.7 22.2 162 31-218 141-307 (445)
196 COG2319 FOG: WD40 repeat [Gene 99.6 2.1E-13 4.6E-18 117.4 22.3 203 28-266 63-275 (466)
197 KOG4227 WD40 repeat protein [G 99.6 1.6E-13 3.4E-18 109.6 18.8 246 27-299 53-327 (609)
198 KOG2321 WD40 repeat protein [G 99.6 8.3E-14 1.8E-18 116.2 17.6 244 28-290 49-330 (703)
199 KOG1240 Protein kinase contain 99.6 5E-14 1.1E-18 126.8 16.9 231 28-267 1046-1339(1431)
200 KOG1009 Chromatin assembly com 99.6 1.5E-14 3.3E-19 115.6 12.2 167 87-264 12-197 (434)
201 KOG0649 WD40 repeat protein [G 99.6 1.6E-13 3.5E-18 102.9 16.7 188 32-259 116-313 (325)
202 KOG0650 WD40 repeat nucleolar 99.6 1.6E-14 3.4E-19 120.9 12.3 154 30-218 566-733 (733)
203 PRK03629 tolB translocation pr 99.6 6E-13 1.3E-17 114.8 22.3 193 30-262 198-406 (429)
204 KOG2139 WD40 repeat protein [G 99.6 3.4E-13 7.3E-18 106.7 18.3 207 31-260 99-309 (445)
205 KOG1272 WD40-repeat-containing 99.6 5.2E-15 1.1E-19 120.2 7.5 196 32-266 131-327 (545)
206 PRK04922 tolB translocation pr 99.6 8.7E-13 1.9E-17 114.2 21.4 194 29-262 202-411 (433)
207 KOG2394 WD40 protein DMR-N9 [G 99.6 5.7E-14 1.2E-18 116.2 12.3 170 40-224 183-366 (636)
208 PRK05137 tolB translocation pr 99.6 2E-12 4.2E-17 112.2 22.7 182 29-250 200-394 (435)
209 KOG1963 WD40 repeat protein [G 99.6 2.7E-13 5.9E-18 118.2 16.8 218 27-261 54-321 (792)
210 PRK11028 6-phosphogluconolacto 99.5 4.4E-12 9.5E-17 106.2 22.9 202 32-263 81-305 (330)
211 KOG0974 WD-repeat protein WDR6 99.5 2.2E-13 4.9E-18 120.7 15.2 196 36-264 93-290 (967)
212 KOG1517 Guanine nucleotide bin 99.5 7.5E-13 1.6E-17 117.8 17.5 200 34-263 1169-1382(1387)
213 KOG0771 Prolactin regulatory e 99.5 1.6E-13 3.5E-18 110.3 12.2 165 28-221 184-355 (398)
214 KOG2111 Uncharacterized conser 99.5 4.9E-12 1.1E-16 98.5 19.7 158 30-223 94-259 (346)
215 KOG1272 WD40-repeat-containing 99.5 1.7E-14 3.7E-19 117.2 6.1 188 31-260 171-360 (545)
216 KOG4227 WD40 repeat protein [G 99.5 2.5E-13 5.4E-18 108.5 11.5 179 76-267 45-230 (609)
217 PF08662 eIF2A: Eukaryotic tra 99.5 2E-12 4.4E-17 98.8 15.8 151 92-264 9-181 (194)
218 KOG4497 Uncharacterized conser 99.5 1.8E-12 3.8E-17 101.5 15.4 212 30-262 91-391 (447)
219 KOG1523 Actin-related protein 99.5 7.5E-13 1.6E-17 103.0 13.1 158 88-261 10-175 (361)
220 PRK02889 tolB translocation pr 99.5 5.2E-12 1.1E-16 109.1 20.0 185 29-253 194-391 (427)
221 PRK01742 tolB translocation pr 99.5 1.4E-12 3E-17 112.7 16.4 161 33-234 250-418 (429)
222 KOG0644 Uncharacterized conser 99.5 2.9E-13 6.3E-18 117.6 10.7 212 27-261 229-467 (1113)
223 PRK03629 tolB translocation pr 99.5 5.3E-12 1.2E-16 109.0 18.3 165 32-234 244-420 (429)
224 TIGR02800 propeller_TolB tol-p 99.5 2.2E-11 4.7E-16 105.5 21.5 185 29-253 188-385 (417)
225 KOG3881 Uncharacterized conser 99.5 1.6E-12 3.4E-17 103.8 12.8 166 1-203 175-344 (412)
226 KOG2111 Uncharacterized conser 99.5 1.8E-11 3.8E-16 95.5 18.2 159 88-264 94-258 (346)
227 KOG1538 Uncharacterized conser 99.4 1.1E-12 2.4E-17 111.6 9.9 147 90-260 14-160 (1081)
228 PRK04922 tolB translocation pr 99.4 2.7E-11 5.8E-16 105.0 18.2 158 32-227 249-418 (433)
229 PRK00178 tolB translocation pr 99.4 1.7E-10 3.8E-15 100.2 22.9 183 29-251 197-392 (430)
230 PRK05137 tolB translocation pr 99.4 9.8E-11 2.1E-15 101.6 21.2 206 53-296 182-414 (435)
231 KOG1963 WD40 repeat protein [G 99.4 5.7E-11 1.2E-15 104.1 19.2 204 34-266 164-379 (792)
232 KOG1064 RAVE (regulator of V-A 99.4 2.4E-12 5.1E-17 120.2 10.6 190 29-267 2207-2403(2439)
233 KOG0309 Conserved WD40 repeat- 99.4 4.4E-12 9.6E-17 109.1 11.4 205 27-263 111-340 (1081)
234 KOG4497 Uncharacterized conser 99.4 2.1E-10 4.5E-15 90.1 19.5 151 32-218 50-238 (447)
235 KOG1310 WD40 repeat protein [G 99.4 1.3E-12 2.8E-17 108.7 7.6 161 83-261 45-230 (758)
236 KOG4547 WD40 repeat-containing 99.4 4.4E-11 9.6E-16 100.4 16.4 190 43-263 5-221 (541)
237 PRK02889 tolB translocation pr 99.3 9.6E-11 2.1E-15 101.3 18.0 153 32-222 241-405 (427)
238 KOG0974 WD-repeat protein WDR6 99.3 2.9E-11 6.3E-16 107.6 14.8 147 38-222 141-290 (967)
239 KOG2321 WD40 repeat protein [G 99.3 3E-11 6.4E-16 101.2 13.4 167 30-219 175-342 (703)
240 KOG1409 Uncharacterized conser 99.3 1.4E-10 3E-15 91.5 16.0 207 26-263 20-271 (404)
241 PRK04792 tolB translocation pr 99.3 5.5E-10 1.2E-14 97.0 21.5 180 30-249 217-409 (448)
242 KOG1334 WD40 repeat protein [G 99.3 2E-11 4.3E-16 100.3 11.3 248 27-305 139-435 (559)
243 PRK01029 tolB translocation pr 99.3 5.8E-10 1.3E-14 96.1 20.0 201 31-264 185-405 (428)
244 KOG0280 Uncharacterized conser 99.3 2.4E-10 5.2E-15 88.3 15.6 167 30-221 69-242 (339)
245 KOG1354 Serine/threonine prote 99.3 5.6E-11 1.2E-15 93.7 12.2 227 30-267 84-364 (433)
246 KOG4547 WD40 repeat-containing 99.3 6.9E-10 1.5E-14 93.4 17.2 144 44-221 71-221 (541)
247 KOG2041 WD40 repeat protein [G 99.2 4.6E-10 1E-14 96.8 15.7 220 30-269 14-254 (1189)
248 TIGR02800 propeller_TolB tol-p 99.2 1.5E-09 3.2E-14 94.1 18.6 156 30-223 233-400 (417)
249 PF02239 Cytochrom_D1: Cytochr 99.2 6E-09 1.3E-13 87.8 19.9 156 34-223 40-205 (369)
250 PRK01029 tolB translocation pr 99.2 2.4E-09 5.2E-14 92.3 18.0 165 32-227 232-410 (428)
251 PRK04792 tolB translocation pr 99.2 4.6E-09 1E-13 91.3 18.4 158 33-228 264-433 (448)
252 KOG2315 Predicted translation 99.1 5.3E-09 1.1E-13 87.8 17.2 151 34-224 221-394 (566)
253 PRK00178 tolB translocation pr 99.1 6.9E-09 1.5E-13 90.2 18.3 155 32-224 244-410 (430)
254 KOG4190 Uncharacterized conser 99.1 2.8E-10 6E-15 95.5 9.0 205 26-260 731-946 (1034)
255 KOG1240 Protein kinase contain 99.1 2.1E-08 4.6E-13 91.5 21.1 197 1-221 1073-1335(1431)
256 COG2706 3-carboxymuconate cycl 99.1 1.9E-07 4.2E-12 74.7 24.2 216 29-272 38-285 (346)
257 KOG0280 Uncharacterized conser 99.1 7.8E-10 1.7E-14 85.6 10.2 164 26-222 161-335 (339)
258 KOG1409 Uncharacterized conser 99.1 1.8E-08 4E-13 79.8 17.9 177 29-220 67-270 (404)
259 KOG3914 WD repeat protein WDR4 99.1 1.8E-09 4E-14 86.9 12.3 159 32-224 64-227 (390)
260 COG4946 Uncharacterized protei 99.1 4.5E-08 9.7E-13 81.0 19.0 173 38-249 327-505 (668)
261 KOG1354 Serine/threonine prote 99.1 9.5E-09 2.1E-13 81.4 14.4 227 30-266 25-305 (433)
262 PF02239 Cytochrom_D1: Cytochr 99.0 3.5E-08 7.7E-13 83.1 18.5 186 44-264 6-204 (369)
263 KOG4714 Nucleoporin [Nuclear s 99.0 2.4E-09 5.3E-14 81.6 9.9 205 44-292 102-316 (319)
264 KOG2315 Predicted translation 99.0 1.9E-07 4.2E-12 78.7 21.5 198 29-263 164-391 (566)
265 PF00400 WD40: WD domain, G-be 99.0 1.1E-09 2.4E-14 60.4 5.8 39 180-218 1-39 (39)
266 KOG3914 WD repeat protein WDR4 99.0 8.1E-09 1.8E-13 83.3 12.5 161 91-267 65-228 (390)
267 PLN02919 haloacid dehalogenase 99.0 1.1E-07 2.4E-12 90.4 22.3 229 32-265 625-891 (1057)
268 PRK04043 tolB translocation pr 99.0 3.2E-07 6.9E-12 78.8 22.5 176 32-248 189-383 (419)
269 KOG4532 WD40-like repeat conta 99.0 4E-07 8.6E-12 70.1 19.4 190 44-266 85-286 (344)
270 PF10282 Lactonase: Lactonase, 98.9 6.9E-07 1.5E-11 75.2 22.4 201 32-262 38-275 (345)
271 KOG2695 WD40 repeat protein [G 98.9 3.9E-09 8.4E-14 83.6 7.2 144 102-267 227-381 (425)
272 PLN02919 haloacid dehalogenase 98.9 2.8E-07 6E-12 87.8 20.8 187 33-224 685-892 (1057)
273 PRK04043 tolB translocation pr 98.9 1.7E-07 3.7E-12 80.5 17.4 157 31-227 233-407 (419)
274 COG5170 CDC55 Serine/threonine 98.9 1E-07 2.3E-12 74.8 13.6 184 31-228 86-319 (460)
275 KOG2041 WD40 repeat protein [G 98.9 7.4E-08 1.6E-12 83.6 13.9 226 27-270 68-345 (1189)
276 KOG1064 RAVE (regulator of V-A 98.9 5.3E-09 1.1E-13 98.7 7.5 151 31-228 2252-2407(2439)
277 PF15492 Nbas_N: Neuroblastoma 98.8 1.4E-06 3.1E-11 67.8 18.6 168 33-224 46-263 (282)
278 PF10282 Lactonase: Lactonase, 98.8 1.9E-06 4.2E-11 72.5 20.8 167 31-220 144-322 (345)
279 PF04762 IKI3: IKI3 family; I 98.8 7.7E-07 1.7E-11 83.4 19.8 207 30-261 120-378 (928)
280 COG2706 3-carboxymuconate cycl 98.8 8.8E-06 1.9E-10 65.5 22.8 212 33-264 91-323 (346)
281 KOG2695 WD40 repeat protein [G 98.8 1.3E-08 2.8E-13 80.8 6.7 134 30-189 252-387 (425)
282 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.9E-06 4E-11 71.5 19.6 206 1-224 79-334 (352)
283 KOG2314 Translation initiation 98.7 2.9E-06 6.4E-11 71.8 18.9 112 150-264 448-575 (698)
284 KOG4532 WD40-like repeat conta 98.7 1.5E-06 3.1E-11 67.1 15.8 147 44-223 129-285 (344)
285 COG4946 Uncharacterized protei 98.7 1.6E-06 3.4E-11 72.1 16.9 145 27-208 356-506 (668)
286 KOG1645 RING-finger-containing 98.7 7.7E-07 1.7E-11 72.3 12.6 92 13-120 176-269 (463)
287 KOG0309 Conserved WD40 repeat- 98.6 2.3E-07 4.9E-12 80.9 10.0 204 30-263 24-233 (1081)
288 TIGR02658 TTQ_MADH_Hv methylam 98.6 7.4E-05 1.6E-09 62.1 24.2 74 38-119 53-138 (352)
289 PF08450 SGL: SMP-30/Gluconola 98.6 1.3E-05 2.9E-10 64.2 19.3 189 35-262 4-213 (246)
290 PF00400 WD40: WD domain, G-be 98.6 1.3E-07 2.7E-12 52.0 4.7 38 136-176 2-39 (39)
291 COG5170 CDC55 Serine/threonine 98.6 3.6E-06 7.9E-11 66.3 13.9 229 29-267 25-314 (460)
292 KOG4190 Uncharacterized conser 98.5 7.2E-07 1.6E-11 75.5 10.1 198 28-260 782-986 (1034)
293 KOG4714 Nucleoporin [Nuclear s 98.5 6.5E-07 1.4E-11 68.6 8.8 209 32-263 38-255 (319)
294 PF07433 DUF1513: Protein of u 98.5 3.8E-05 8.3E-10 61.7 19.1 204 30-265 4-250 (305)
295 PF04762 IKI3: IKI3 family; I 98.5 1.6E-05 3.4E-10 74.8 19.4 211 30-263 75-334 (928)
296 KOG1920 IkappaB kinase complex 98.5 3.8E-05 8.2E-10 71.1 20.1 213 31-263 69-323 (1265)
297 PF07433 DUF1513: Protein of u 98.5 8.3E-05 1.8E-09 59.8 19.8 179 2-226 31-253 (305)
298 PF13360 PQQ_2: PQQ-like domai 98.5 2.7E-05 5.9E-10 62.0 16.8 180 44-264 37-232 (238)
299 PF04053 Coatomer_WDAD: Coatom 98.5 3.5E-06 7.7E-11 72.4 12.2 142 32-222 34-175 (443)
300 PF15492 Nbas_N: Neuroblastoma 98.4 0.00016 3.4E-09 56.8 19.5 204 36-264 3-261 (282)
301 TIGR03300 assembly_YfgL outer 98.4 3E-05 6.6E-10 66.3 17.4 175 100-298 146-342 (377)
302 PF08450 SGL: SMP-30/Gluconola 98.4 0.00021 4.6E-09 57.2 21.0 167 3-207 64-242 (246)
303 TIGR03300 assembly_YfgL outer 98.4 9.1E-05 2E-09 63.4 19.9 213 44-297 66-300 (377)
304 PF11768 DUF3312: Protein of u 98.4 1.1E-05 2.5E-10 69.1 13.9 73 29-119 258-331 (545)
305 KOG0882 Cyclophilin-related pe 98.4 6.7E-06 1.4E-10 68.0 11.5 206 28-265 7-234 (558)
306 KOG2066 Vacuolar assembly/sort 98.4 2.2E-05 4.9E-10 69.5 15.3 181 30-263 39-234 (846)
307 KOG1008 Uncharacterized conser 98.4 8.7E-08 1.9E-12 82.1 0.7 202 31-263 57-276 (783)
308 KOG1832 HIV-1 Vpr-binding prot 98.3 3.9E-07 8.4E-12 81.2 3.7 189 27-265 1098-1294(1516)
309 KOG1912 WD40 repeat protein [G 98.3 4.4E-05 9.6E-10 67.5 15.8 155 29-219 14-185 (1062)
310 COG5354 Uncharacterized protei 98.3 0.00038 8.2E-09 58.8 20.3 208 32-263 73-349 (561)
311 KOG2314 Translation initiation 98.3 1.8E-05 4E-10 67.2 12.6 140 33-209 213-365 (698)
312 KOG2066 Vacuolar assembly/sort 98.3 4.1E-05 8.8E-10 67.9 15.1 140 42-221 83-234 (846)
313 KOG1275 PAB-dependent poly(A) 98.3 2.1E-05 4.6E-10 70.6 13.4 149 33-220 180-342 (1118)
314 PF11768 DUF3312: Protein of u 98.3 8.2E-06 1.8E-10 69.9 10.4 72 149-223 261-332 (545)
315 KOG1912 WD40 repeat protein [G 98.3 6.2E-05 1.4E-09 66.6 15.7 202 28-263 53-305 (1062)
316 KOG1920 IkappaB kinase complex 98.3 0.00011 2.4E-09 68.1 17.8 172 30-223 109-325 (1265)
317 KOG1275 PAB-dependent poly(A) 98.2 2.5E-05 5.4E-10 70.2 11.5 177 44-260 148-340 (1118)
318 PF13360 PQQ_2: PQQ-like domai 98.1 0.00021 4.4E-09 56.9 15.0 139 52-224 2-144 (238)
319 smart00320 WD40 WD40 repeats. 98.1 1.9E-05 4.1E-10 42.3 5.9 39 180-218 2-40 (40)
320 KOG2114 Vacuolar assembly/sort 98.0 0.0008 1.7E-08 60.5 17.2 159 37-223 30-204 (933)
321 KOG0882 Cyclophilin-related pe 98.0 9.1E-05 2E-09 61.5 10.6 164 29-224 52-235 (558)
322 COG5354 Uncharacterized protei 98.0 0.00041 8.9E-09 58.6 14.4 113 85-219 29-159 (561)
323 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0032 6.9E-08 49.1 17.7 147 40-222 20-167 (354)
324 KOG1008 Uncharacterized conser 97.9 2.8E-06 6E-11 73.2 0.9 163 27-220 99-275 (783)
325 COG0823 TolB Periplasmic compo 97.9 0.00066 1.4E-08 58.5 15.3 157 30-223 192-361 (425)
326 PF03178 CPSF_A: CPSF A subuni 97.9 0.003 6.5E-08 52.8 19.0 184 1-221 4-203 (321)
327 PF06977 SdiA-regulated: SdiA- 97.9 0.0047 1E-07 49.0 17.9 167 30-222 21-203 (248)
328 COG0823 TolB Periplasmic compo 97.8 0.00043 9.2E-09 59.6 12.2 159 2-209 221-388 (425)
329 PRK11138 outer membrane biogen 97.8 0.0018 3.8E-08 55.9 16.2 214 44-297 121-356 (394)
330 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.002 4.4E-08 43.5 12.7 102 33-173 2-109 (111)
331 PRK11138 outer membrane biogen 97.8 0.0053 1.1E-07 53.0 18.6 225 44-297 70-315 (394)
332 PF08596 Lgl_C: Lethal giant l 97.8 0.0015 3.3E-08 55.7 14.9 213 32-264 3-292 (395)
333 KOG3621 WD40 repeat-containing 97.8 0.00048 1E-08 60.5 11.8 120 29-179 32-155 (726)
334 KOG3621 WD40 repeat-containing 97.7 0.00025 5.5E-09 62.2 9.6 117 87-221 32-155 (726)
335 PRK02888 nitrous-oxide reducta 97.7 0.0043 9.4E-08 55.1 16.1 109 96-221 284-405 (635)
336 KOG2114 Vacuolar assembly/sort 97.7 0.0043 9.4E-08 56.1 16.1 132 29-192 124-258 (933)
337 KOG4640 Anaphase-promoting com 97.7 0.00024 5.3E-09 61.6 8.2 72 150-223 23-95 (665)
338 KOG2444 WD40 repeat protein [G 97.6 0.00016 3.4E-09 55.0 6.1 64 159-222 113-179 (238)
339 KOG1645 RING-finger-containing 97.6 0.0003 6.5E-09 57.7 7.7 84 136-223 184-269 (463)
340 KOG3617 WD40 and TPR repeat-co 97.6 0.00017 3.6E-09 64.7 6.3 108 92-220 19-131 (1416)
341 KOG3617 WD40 and TPR repeat-co 97.5 0.00087 1.9E-08 60.4 10.1 72 30-117 59-131 (1416)
342 KOG4640 Anaphase-promoting com 97.5 0.00078 1.7E-08 58.6 8.7 93 88-200 20-115 (665)
343 PF08553 VID27: VID27 cytoplas 97.4 0.0091 2E-07 55.0 15.5 71 30-117 577-647 (794)
344 PF08553 VID27: VID27 cytoplas 97.4 0.0041 9E-08 57.1 13.3 143 44-219 494-646 (794)
345 smart00320 WD40 WD40 repeats. 97.4 0.00051 1.1E-08 36.4 4.7 37 137-176 4-40 (40)
346 KOG1832 HIV-1 Vpr-binding prot 97.4 0.00027 5.9E-09 63.8 4.8 126 134-267 1090-1219(1516)
347 PF04841 Vps16_N: Vps16, N-ter 97.3 0.036 7.7E-07 48.0 17.4 62 157-222 187-248 (410)
348 PRK02888 nitrous-oxide reducta 97.3 0.022 4.8E-07 50.8 15.9 92 169-263 295-405 (635)
349 COG3386 Gluconolactonase [Carb 97.3 0.044 9.5E-07 45.2 16.8 111 86-209 160-274 (307)
350 PF12894 Apc4_WD40: Anaphase-p 97.3 0.001 2.3E-08 37.5 5.2 33 30-64 11-43 (47)
351 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.025 5.3E-07 38.4 12.5 100 91-216 2-110 (111)
352 COG3391 Uncharacterized conser 97.2 0.1 2.3E-06 44.7 19.9 157 32-224 117-287 (381)
353 KOG2395 Protein involved in va 97.2 0.0056 1.2E-07 52.5 10.8 142 45-219 348-499 (644)
354 PRK13616 lipoprotein LpqB; Pro 97.2 0.051 1.1E-06 49.2 17.5 66 150-218 450-523 (591)
355 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0017 3.6E-08 36.7 5.2 34 190-223 11-44 (47)
356 PF04053 Coatomer_WDAD: Coatom 97.2 0.0077 1.7E-07 52.2 11.5 182 31-262 69-262 (443)
357 COG3391 Uncharacterized conser 97.1 0.14 3E-06 44.0 19.5 194 33-264 76-285 (381)
358 PF00780 CNH: CNH domain; Int 97.1 0.063 1.4E-06 43.7 16.3 159 44-227 8-172 (275)
359 KOG2079 Vacuolar assembly/sort 97.1 0.0021 4.5E-08 59.5 8.0 99 100-218 99-201 (1206)
360 PF08596 Lgl_C: Lethal giant l 97.1 0.15 3.2E-06 43.8 19.0 173 30-223 86-293 (395)
361 PHA02713 hypothetical protein; 97.1 0.049 1.1E-06 49.2 16.2 92 171-262 433-533 (557)
362 KOG4499 Ca2+-binding protein R 97.0 0.083 1.8E-06 40.9 14.3 107 91-207 160-271 (310)
363 KOG2079 Vacuolar assembly/sort 97.0 0.0061 1.3E-07 56.6 9.5 100 44-176 100-201 (1206)
364 PF03178 CPSF_A: CPSF A subuni 96.9 0.14 3E-06 42.9 16.5 153 29-218 87-263 (321)
365 PF06433 Me-amine-dh_H: Methyl 96.8 0.22 4.8E-06 41.2 18.0 159 34-223 39-216 (342)
366 KOG4441 Proteins containing BT 96.6 0.4 8.6E-06 43.5 18.3 185 33-255 325-534 (571)
367 PF02897 Peptidase_S9_N: Proly 96.6 0.41 8.8E-06 41.7 19.4 159 32-223 125-312 (414)
368 KOG4441 Proteins containing BT 96.5 0.19 4.1E-06 45.5 15.3 218 44-298 286-535 (571)
369 PRK13616 lipoprotein LpqB; Pro 96.5 0.11 2.4E-06 47.1 13.6 102 89-216 350-472 (591)
370 COG3490 Uncharacterized protei 96.4 0.36 7.7E-06 38.7 14.8 156 36-225 119-315 (366)
371 cd00216 PQQ_DH Dehydrogenases 96.4 0.63 1.4E-05 41.5 18.8 68 157-224 225-323 (488)
372 PF00930 DPPIV_N: Dipeptidyl p 96.4 0.029 6.3E-07 47.6 9.5 102 157-260 1-129 (353)
373 KOG2444 WD40 repeat protein [G 96.4 0.0044 9.6E-08 47.4 3.8 106 158-263 68-178 (238)
374 KOG4649 PQQ (pyrrolo-quinoline 96.4 0.23 4.9E-06 39.2 12.8 65 159-223 62-126 (354)
375 PF12234 Rav1p_C: RAVE protein 96.3 0.22 4.7E-06 45.0 14.5 110 91-219 32-155 (631)
376 PF00930 DPPIV_N: Dipeptidyl p 96.3 0.02 4.3E-07 48.6 7.8 93 97-210 1-120 (353)
377 PF14870 PSII_BNR: Photosynthe 96.3 0.22 4.7E-06 41.0 13.3 155 30-217 144-301 (302)
378 PF05096 Glu_cyclase_2: Glutam 96.2 0.48 1E-05 37.8 16.2 156 31-224 45-207 (264)
379 cd00216 PQQ_DH Dehydrogenases 96.2 0.85 1.8E-05 40.7 19.8 193 44-265 62-322 (488)
380 TIGR02604 Piru_Ver_Nterm putat 96.1 0.35 7.6E-06 41.3 14.3 157 32-211 15-204 (367)
381 PF14727 PHTB1_N: PTHB1 N-term 96.0 0.88 1.9E-05 39.3 16.8 162 39-219 33-203 (418)
382 PF04841 Vps16_N: Vps16, N-ter 96.0 0.84 1.8E-05 39.6 16.3 31 89-119 81-111 (410)
383 PHA02713 hypothetical protein; 96.0 0.57 1.2E-05 42.5 15.6 137 158-296 350-523 (557)
384 PF15390 DUF4613: Domain of un 95.9 0.49 1.1E-05 41.9 14.1 155 31-221 20-187 (671)
385 COG3204 Uncharacterized protei 95.9 0.75 1.6E-05 37.1 14.2 170 30-223 85-266 (316)
386 KOG4499 Ca2+-binding protein R 95.8 0.18 4E-06 39.1 10.0 107 34-165 161-271 (310)
387 PF10313 DUF2415: Uncharacteri 95.8 0.045 9.8E-07 30.0 5.0 31 32-62 2-34 (43)
388 COG3490 Uncharacterized protei 95.8 0.76 1.6E-05 36.9 13.7 102 91-209 70-180 (366)
389 PF05694 SBP56: 56kDa selenium 95.8 1 2.3E-05 38.6 15.3 156 38-222 137-344 (461)
390 PF07569 Hira: TUP1-like enhan 95.8 0.1 2.2E-06 40.8 9.1 72 38-118 18-96 (219)
391 KOG2395 Protein involved in va 95.6 0.61 1.3E-05 40.7 13.4 70 32-118 432-501 (644)
392 PF06433 Me-amine-dh_H: Methyl 95.6 1.1 2.4E-05 37.3 15.6 165 40-224 144-324 (342)
393 PHA03098 kelch-like protein; P 95.6 0.88 1.9E-05 41.1 15.5 67 159-227 389-471 (534)
394 COG3386 Gluconolactonase [Carb 95.5 1.2 2.6E-05 36.9 19.1 150 35-221 29-194 (307)
395 PF10168 Nup88: Nuclear pore c 95.2 0.86 1.9E-05 42.4 14.0 72 149-221 86-180 (717)
396 PF14655 RAB3GAP2_N: Rab3 GTPa 95.2 0.6 1.3E-05 40.2 12.2 87 85-188 304-408 (415)
397 KOG2377 Uncharacterized conser 95.0 1.8 3.8E-05 37.3 13.9 121 85-222 63-187 (657)
398 KOG1916 Nuclear protein, conta 94.9 0.03 6.4E-07 51.4 3.7 158 32-221 182-375 (1283)
399 KOG1916 Nuclear protein, conta 94.9 0.024 5.2E-07 52.0 3.1 163 28-221 130-324 (1283)
400 PF02897 Peptidase_S9_N: Proly 94.8 1.1 2.5E-05 38.9 13.5 112 90-222 125-262 (414)
401 PF05694 SBP56: 56kDa selenium 94.8 2.3 5.1E-05 36.6 17.9 205 44-270 88-350 (461)
402 PF06977 SdiA-regulated: SdiA- 94.8 1.7 3.6E-05 34.8 18.4 171 32-216 66-246 (248)
403 PF14583 Pectate_lyase22: Olig 94.7 1.3 2.8E-05 37.5 12.6 154 33-220 38-222 (386)
404 PF07569 Hira: TUP1-like enhan 94.7 0.24 5.1E-06 38.8 8.0 70 157-227 19-102 (219)
405 PF10647 Gmad1: Lipoprotein Lp 94.7 1.8 3.9E-05 34.8 19.5 160 32-223 25-200 (253)
406 KOG3630 Nuclear pore complex, 94.5 0.59 1.3E-05 44.6 11.0 122 89-223 101-231 (1405)
407 PHA02790 Kelch-like protein; P 94.5 3.1 6.6E-05 37.1 15.3 64 159-227 362-430 (480)
408 COG5167 VID27 Protein involved 94.4 1.2 2.5E-05 38.9 11.7 141 45-220 482-632 (776)
409 PHA03098 kelch-like protein; P 94.2 2.2 4.7E-05 38.7 14.0 67 159-227 437-518 (534)
410 PF10168 Nup88: Nuclear pore c 94.0 4.3 9.3E-05 38.0 15.5 87 89-179 85-180 (717)
411 KOG3630 Nuclear pore complex, 93.9 0.74 1.6E-05 44.0 10.4 152 31-207 101-260 (1405)
412 PF10313 DUF2415: Uncharacteri 93.9 0.24 5.3E-06 27.2 4.5 31 191-221 1-34 (43)
413 PRK13684 Ycf48-like protein; P 93.8 3.6 7.9E-05 34.6 16.5 155 30-219 172-330 (334)
414 PF14583 Pectate_lyase22: Olig 93.6 4.2 9.1E-05 34.6 18.3 171 4-219 173-380 (386)
415 PF14870 PSII_BNR: Photosynthe 93.5 3.7 8E-05 33.9 17.4 109 87-216 143-257 (302)
416 KOG4460 Nuclear pore complex, 93.5 1.1 2.4E-05 39.1 10.0 72 150-222 106-200 (741)
417 PF07995 GSDH: Glucose / Sorbo 93.0 3.3 7.1E-05 34.9 12.3 111 90-213 3-136 (331)
418 KOG1898 Splicing factor 3b, su 93.0 9 0.00019 36.8 17.1 106 94-220 939-1048(1205)
419 PF12234 Rav1p_C: RAVE protein 92.8 2.3 5E-05 38.8 11.4 108 150-260 32-154 (631)
420 TIGR02604 Piru_Ver_Nterm putat 92.7 3.6 7.8E-05 35.2 12.4 104 89-209 14-142 (367)
421 PF13449 Phytase-like: Esteras 92.4 5.9 0.00013 33.3 17.1 180 30-220 19-249 (326)
422 PF12657 TFIIIC_delta: Transcr 92.4 1.3 2.7E-05 33.3 8.2 31 191-221 86-122 (173)
423 PF05096 Glu_cyclase_2: Glutam 92.3 5 0.00011 32.3 18.3 130 44-209 101-249 (264)
424 COG3204 Uncharacterized protei 92.1 5.7 0.00012 32.3 17.9 117 87-221 84-211 (316)
425 PF00780 CNH: CNH domain; Int 91.4 6.7 0.00014 31.8 21.7 205 31-266 36-259 (275)
426 TIGR02276 beta_rpt_yvtn 40-res 91.4 1.3 2.9E-05 23.8 6.0 40 158-198 1-41 (42)
427 KOG2377 Uncharacterized conser 91.4 3.8 8.3E-05 35.4 10.5 120 29-179 65-186 (657)
428 KOG2247 WD40 repeat-containing 91.4 0.031 6.8E-07 47.8 -1.5 147 33-218 37-186 (615)
429 PF15390 DUF4613: Domain of un 91.3 2.9 6.4E-05 37.3 10.0 71 34-119 116-188 (671)
430 PF14761 HPS3_N: Hermansky-Pud 91.1 5.9 0.00013 30.7 11.8 103 101-222 30-165 (215)
431 PF14761 HPS3_N: Hermansky-Pud 91.1 5.9 0.00013 30.7 15.8 48 45-106 30-77 (215)
432 PRK13684 Ycf48-like protein; P 91.1 8.6 0.00019 32.4 15.1 107 89-216 173-284 (334)
433 KOG1897 Damage-specific DNA bi 91.0 12 0.00027 35.7 14.0 120 137-262 819-942 (1096)
434 KOG1900 Nuclear pore complex, 90.7 5.8 0.00012 38.9 12.0 160 34-221 82-273 (1311)
435 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.3 14 0.00029 33.5 15.6 72 152-224 238-337 (527)
436 PF14781 BBS2_N: Ciliary BBSom 89.9 5.4 0.00012 28.3 14.4 122 34-183 2-130 (136)
437 PF10214 Rrn6: RNA polymerase 89.8 19 0.00041 34.4 18.4 129 31-179 146-277 (765)
438 PF08728 CRT10: CRT10; InterP 89.6 18 0.00038 33.8 15.9 123 90-219 102-245 (717)
439 PF11635 Med16: Mediator compl 89.6 19 0.00042 34.2 16.1 67 148-215 260-345 (753)
440 PF10647 Gmad1: Lipoprotein Lp 89.5 9.8 0.00021 30.6 16.4 108 90-219 25-143 (253)
441 PF11715 Nup160: Nucleoporin N 89.3 4.3 9.4E-05 36.9 10.2 36 150-186 217-256 (547)
442 KOG1897 Damage-specific DNA bi 89.3 21 0.00046 34.3 16.4 153 32-219 776-941 (1096)
443 PRK10115 protease 2; Provision 89.2 20 0.00043 33.8 20.5 113 31-177 127-254 (686)
444 PRK10115 protease 2; Provision 89.0 20 0.00044 33.7 16.1 109 89-219 127-254 (686)
445 TIGR03074 PQQ_membr_DH membran 89.0 8.6 0.00019 36.4 11.8 63 160-223 260-347 (764)
446 PF11715 Nup160: Nucleoporin N 88.7 1.9 4.1E-05 39.2 7.4 67 158-224 156-252 (547)
447 COG5290 IkappaB kinase complex 88.6 6.7 0.00015 36.5 10.3 101 151-254 250-358 (1243)
448 COG3823 Glutamine cyclotransfe 88.5 9.8 0.00021 29.4 11.7 129 44-208 102-247 (262)
449 PF14655 RAB3GAP2_N: Rab3 GTPa 88.2 5 0.00011 34.8 9.1 74 149-223 309-401 (415)
450 PHA02790 Kelch-like protein; P 88.1 19 0.00041 32.2 13.2 61 159-224 407-474 (480)
451 TIGR03118 PEPCTERM_chp_1 conse 87.7 14 0.00031 30.3 16.5 182 31-223 77-282 (336)
452 PLN00033 photosystem II stabil 87.4 18 0.0004 31.3 15.0 110 92-223 242-359 (398)
453 COG4257 Vgb Streptogramin lyas 87.0 15 0.00032 29.8 17.1 197 31-263 62-263 (353)
454 PF08728 CRT10: CRT10; InterP 86.9 27 0.00059 32.7 13.5 133 29-177 99-245 (717)
455 PF03022 MRJP: Major royal jel 86.6 17 0.00036 30.0 18.5 195 2-208 37-253 (287)
456 KOG2280 Vacuolar assembly/sort 86.4 28 0.00061 32.4 17.0 53 51-119 62-114 (829)
457 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.3 25 0.00055 31.8 19.0 119 44-186 70-197 (527)
458 TIGR03074 PQQ_membr_DH membran 85.4 35 0.00075 32.5 16.4 55 169-223 413-480 (764)
459 PF07676 PD40: WD40-like Beta 83.8 4.7 0.0001 21.3 4.8 28 31-58 9-38 (39)
460 PLN00033 photosystem II stabil 83.8 28 0.00061 30.2 17.9 111 88-217 280-396 (398)
461 KOG2280 Vacuolar assembly/sort 83.6 38 0.00083 31.6 14.3 70 150-223 219-290 (829)
462 KOG1520 Predicted alkaloid syn 83.2 28 0.0006 29.6 10.9 53 165-218 194-248 (376)
463 KOG4460 Nuclear pore complex, 83.2 21 0.00046 31.7 10.3 89 30-119 103-200 (741)
464 COG4590 ABC-type uncharacteriz 82.9 13 0.00028 32.3 8.8 163 30-223 220-389 (733)
465 PF07676 PD40: WD40-like Beta 82.9 5.2 0.00011 21.1 5.4 29 189-217 7-38 (39)
466 PF12657 TFIIIC_delta: Transcr 82.7 12 0.00027 28.0 8.1 30 89-118 86-122 (173)
467 PF12341 DUF3639: Protein of u 82.0 4.5 9.7E-05 19.7 3.5 25 32-59 3-27 (27)
468 KOG2247 WD40 repeat-containing 81.7 0.41 8.9E-06 41.3 -0.2 101 30-164 74-175 (615)
469 smart00564 PQQ beta-propeller 81.4 4.9 0.00011 20.1 4.0 25 161-185 7-31 (33)
470 PF12768 Rax2: Cortical protei 78.3 9.3 0.0002 31.3 6.4 61 169-229 15-81 (281)
471 PF14727 PHTB1_N: PTHB1 N-term 77.2 50 0.0011 28.9 13.7 60 162-223 302-363 (418)
472 PF01011 PQQ: PQQ enzyme repea 76.1 9.5 0.00021 20.1 4.5 27 162-188 2-28 (38)
473 TIGR03118 PEPCTERM_chp_1 conse 76.1 33 0.00071 28.4 8.7 71 150-221 25-119 (336)
474 COG4590 ABC-type uncharacteriz 75.5 19 0.00041 31.4 7.6 163 89-266 221-390 (733)
475 KOG1900 Nuclear pore complex, 75.2 57 0.0012 32.6 11.4 136 106-263 96-273 (1311)
476 KOG1896 mRNA cleavage and poly 74.9 95 0.0021 31.0 13.7 156 44-225 1047-1218(1366)
477 COG5276 Uncharacterized conser 74.5 47 0.001 27.3 13.0 165 113-296 68-234 (370)
478 PF03088 Str_synth: Strictosid 73.4 23 0.0005 23.2 8.8 43 166-209 33-75 (89)
479 TIGR03606 non_repeat_PQQ dehyd 73.2 67 0.0015 28.5 13.3 31 89-119 30-61 (454)
480 PF11635 Med16: Mediator compl 72.5 24 0.00051 33.7 8.4 82 30-112 259-345 (753)
481 COG5167 VID27 Protein involved 72.2 73 0.0016 28.5 11.1 131 99-252 478-623 (776)
482 PF14781 BBS2_N: Ciliary BBSom 72.0 33 0.00072 24.5 10.3 68 153-223 4-84 (136)
483 PLN02153 epithiospecifier prot 70.4 65 0.0014 27.2 16.8 23 44-66 87-114 (341)
484 PF14779 BBS1: Ciliary BBSome 69.8 33 0.00072 27.6 7.4 74 28-113 174-254 (257)
485 PLN02193 nitrile-specifier pro 69.7 83 0.0018 28.1 15.7 64 159-224 328-414 (470)
486 KOG1983 Tomosyn and related SN 69.2 42 0.00092 33.1 9.4 35 29-64 34-68 (993)
487 PF01731 Arylesterase: Arylest 68.0 31 0.00066 22.5 6.4 50 169-221 35-85 (86)
488 PF12768 Rax2: Cortical protei 67.1 70 0.0015 26.3 12.6 53 52-119 15-74 (281)
489 COG1520 FOG: WD40-like repeat 67.0 73 0.0016 27.3 9.8 104 99-223 68-174 (370)
490 PF13570 PQQ_3: PQQ-like domai 66.2 13 0.00028 19.7 3.3 21 159-179 20-40 (40)
491 PF01436 NHL: NHL repeat; Int 66.1 14 0.0003 17.9 4.5 25 33-58 4-28 (28)
492 KOG3522 Predicted guanine nucl 65.4 64 0.0014 30.7 9.1 68 148-220 627-697 (925)
493 PF08801 Nucleoporin_N: Nup133 62.6 1.1E+02 0.0023 26.9 15.3 30 192-221 191-220 (422)
494 PF07995 GSDH: Glucose / Sorbo 62.4 95 0.0021 26.2 18.8 66 150-215 255-330 (331)
495 PF14269 Arylsulfotran_2: Aryl 61.7 93 0.002 25.9 14.0 71 90-177 145-219 (299)
496 KOG3616 Selective LIM binding 61.0 14 0.00031 34.3 4.3 33 191-223 15-47 (1636)
497 TIGR03606 non_repeat_PQQ dehyd 59.8 1.3E+02 0.0028 26.8 12.9 60 32-100 31-90 (454)
498 COG4257 Vgb Streptogramin lyas 58.5 1E+02 0.0022 25.3 16.1 117 88-224 147-266 (353)
499 TIGR03547 muta_rot_YjhT mutatr 55.3 1.3E+02 0.0028 25.4 15.9 23 44-66 65-98 (346)
500 PF14269 Arylsulfotran_2: Aryl 55.1 1.2E+02 0.0027 25.2 11.0 70 150-220 146-220 (299)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-42 Score=271.00 Aligned_cols=249 Identities=21% Similarity=0.387 Sum_probs=209.9
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
+|+||+.+.. +.+.++ ||..-|.|++|+|++ ..||+|+.||+|++||..+++ +.
T Consensus 139 vR~WD~~TeT--p~~t~K---------gH~~WVlcvawsPDg-k~iASG~~dg~I~lwdpktg~--------------~~ 192 (480)
T KOG0271|consen 139 VRLWDLDTET--PLFTCK---------GHKNWVLCVAWSPDG-KKIASGSKDGSIRLWDPKTGQ--------------QI 192 (480)
T ss_pred EEeeccCCCC--cceeec---------CCccEEEEEEECCCc-chhhccccCCeEEEecCCCCC--------------cc
Confidence 5899998754 566664 588999999999999 899999999999999999998 33
Q ss_pred cccccCCCccEEEEEEcc-----CCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEE
Q 021484 81 RHLIGKNNIHITGLAYSN-----TSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN 154 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~-----~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 154 (312)
-..+.+|...|++++|.| .+++||+++ ||.++|||+..+ .++..+.+|..+ |+|+.
T Consensus 193 g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~----------------~~~~~lsgHT~~--VTCvr 254 (480)
T KOG0271|consen 193 GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG----------------TCVRTLSGHTAS--VTCVR 254 (480)
T ss_pred cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc----------------eEEEEeccCccc--eEEEE
Confidence 333489999999999977 446888875 999999999887 788999999977 99999
Q ss_pred EecCCCCEEEEeccCceEEEEeccCCeeEE--------------------------------------------------
Q 021484 155 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-------------------------------------------------- 184 (312)
Q Consensus 155 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-------------------------------------------------- 184 (312)
| -...+|++|+.|++|++|+...|+++.
T Consensus 255 w--GG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~ 332 (480)
T KOG0271|consen 255 W--GGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVL 332 (480)
T ss_pred E--cCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhh
Confidence 8 345688999999999999866543221
Q ss_pred -----------------------------EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhh
Q 021484 185 -----------------------------LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI 234 (312)
Q Consensus 185 -----------------------------~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~ 234 (312)
.+.+|..-|+.+.|||+++++|+++.|+.|++|+-++++ +.++.+|...+
T Consensus 333 ~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~V 412 (480)
T KOG0271|consen 333 KDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAV 412 (480)
T ss_pred ccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcccee
Confidence 344677889999999999999999999999999999988 58899999999
Q ss_pred hhhhccCCCCceeEEecCCceEEEEEecccCccceeEeecCCCccCCCCCCCeEEEeecCCCCCCCCCCCcee
Q 021484 235 MKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGNQR 307 (312)
Q Consensus 235 ~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 307 (312)
++.+ |+.|.+++++++.|.++++|++++. ++ ..++++|+|+ ||.+|.+.+......+|-++
T Consensus 413 Yqva-wsaDsRLlVS~SkDsTLKvw~V~tk-Kl--------~~DLpGh~DE--Vf~vDwspDG~rV~sggkdk 473 (480)
T KOG0271|consen 413 YQVA-WSADSRLLVSGSKDSTLKVWDVRTK-KL--------KQDLPGHADE--VFAVDWSPDGQRVASGGKDK 473 (480)
T ss_pred EEEE-eccCccEEEEcCCCceEEEEEeeee-ee--------cccCCCCCce--EEEEEecCCCceeecCCCce
Confidence 8776 7899999999999999999999877 44 5799999999 99999876665555555444
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.6e-39 Score=255.88 Aligned_cols=225 Identities=16% Similarity=0.248 Sum_probs=198.1
Q ss_pred CCCccceEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 27 PMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
.||...|.++.|+|. ....+|+++.||++++|++.+.. ++..+ .+|...|..++|+|+|++|++
T Consensus 214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~---------~l~~l------~gH~~RVs~VafHPsG~~L~T 278 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET---------PLQDL------EGHLARVSRVAFHPSGKFLGT 278 (459)
T ss_pred eccccceeeEEEccCCCccceeeeccCCceeeeccCCCc---------chhhh------hcchhhheeeeecCCCceeee
Confidence 369999999999997 34799999999999999998764 22222 899999999999999999999
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
++ |.+-++||++++ ..+....||... |.+++| .++|.++++|+.|..-+|||+++++++.
T Consensus 279 asfD~tWRlWD~~tk----------------~ElL~QEGHs~~--v~~iaf-~~DGSL~~tGGlD~~~RvWDlRtgr~im 339 (459)
T KOG0272|consen 279 ASFDSTWRLWDLETK----------------SELLLQEGHSKG--VFSIAF-QPDGSLAATGGLDSLGRVWDLRTGRCIM 339 (459)
T ss_pred cccccchhhcccccc----------------hhhHhhcccccc--cceeEe-cCCCceeeccCccchhheeecccCcEEE
Confidence 75 999999999998 677788899976 999999 9999999999999999999999999999
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCC-CCceeEEecCCceEEEEEec
Q 021484 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~ 262 (312)
.+.+|...|.+|+|+|+|..|||||.|++++|||++... +..+++|.+-+- ...+.+ .+.+|+|++.|++++||.-.
T Consensus 340 ~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS-~Vk~~p~~g~fL~TasyD~t~kiWs~~ 418 (459)
T KOG0272|consen 340 FLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVS-QVKYSPQEGYFLVTASYDNTVKIWSTR 418 (459)
T ss_pred EecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhh-heEecccCCeEEEEcccCcceeeecCC
Confidence 999999999999999999999999999999999999876 578888888774 445665 78999999999999999866
Q ss_pred ccCccceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484 263 RRQTLAYRERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
..+. ...+++|+++ |+.+|.+.+.
T Consensus 419 ~~~~---------~ksLaGHe~k--V~s~Dis~d~ 442 (459)
T KOG0272|consen 419 TWSP---------LKSLAGHEGK--VISLDISPDS 442 (459)
T ss_pred Cccc---------chhhcCCccc--eEEEEeccCC
Confidence 5533 4688888888 9999986644
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-37 Score=246.24 Aligned_cols=197 Identities=17% Similarity=0.281 Sum_probs=181.9
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 107 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 107 (312)
||..+|..++|+|+| ++|+|++.|.+-++||+.++. ......+|...|.+++|+++|.++++|+
T Consensus 259 gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~---------------ElL~QEGHs~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 259 GHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKS---------------ELLLQEGHSKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred cchhhheeeeecCCC-ceeeecccccchhhcccccch---------------hhHhhcccccccceeEecCCCceeeccC
Confidence 589999999999999 899999999999999999986 2233389999999999999999999975
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
|..-+|||++++ .++..+.+|... |.+|+| +|+|..|++|+.|++++|||++..+.+.++
T Consensus 323 lD~~~RvWDlRtg----------------r~im~L~gH~k~--I~~V~f-sPNGy~lATgs~Dnt~kVWDLR~r~~ly~i 383 (459)
T KOG0272|consen 323 LDSLGRVWDLRTG----------------RCIMFLAGHIKE--ILSVAF-SPNGYHLATGSSDNTCKVWDLRMRSELYTI 383 (459)
T ss_pred ccchhheeecccC----------------cEEEEecccccc--eeeEeE-CCCceEEeecCCCCcEEEeeecccccceec
Confidence 999999999999 899999999966 999999 999999999999999999999998999999
Q ss_pred ecCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484 187 VGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 187 ~~~~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.+|..-|+.|.|+| .|.+|+|++.|++++||...+.. +.++.+|...++.+. .++++.++++++.|.++++|.
T Consensus 384 pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~D-is~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 384 PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLD-ISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEE-eccCCceEEEeccCceeeecc
Confidence 99999999999999 67779999999999999988876 588999999997765 788999999999999999995
No 4
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.4e-37 Score=258.87 Aligned_cols=204 Identities=16% Similarity=0.280 Sum_probs=186.7
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
-||.++|+.+.|+|+. ++|++++.|+++|+|.+.+.. +.... .+|..+|+.+.|+|.|.++|++
T Consensus 448 ~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s--------------~~V~y-~GH~~PVwdV~F~P~GyYFata 511 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWS--------------CLVIY-KGHLAPVWDVQFAPRGYYFATA 511 (707)
T ss_pred ecCCCceeeeeecccc-cceeeccCCcceeeeecccce--------------eEEEe-cCCCcceeeEEecCCceEEEec
Confidence 4899999999999998 899999999999999999887 44444 7999999999999999999997
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
+ |++.++|..... ++.+.+.+|.+. |.|+.| +|+..|+++|+.|.+|++||..+|..++.
T Consensus 512 s~D~tArLWs~d~~----------------~PlRifaghlsD--V~cv~F-HPNs~Y~aTGSsD~tVRlWDv~~G~~VRi 572 (707)
T KOG0263|consen 512 SHDQTARLWSTDHN----------------KPLRIFAGHLSD--VDCVSF-HPNSNYVATGSSDRTVRLWDVSTGNSVRI 572 (707)
T ss_pred CCCceeeeeecccC----------------Cchhhhcccccc--cceEEE-CCcccccccCCCCceEEEEEcCCCcEEEE
Confidence 5 999999999877 799999999987 999999 99999999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
|.+|.++|.+++|||+|++|++|+.|+.|++||+.++++ ..+.+|... +....++.++..|++++.|..|++||+...
T Consensus 573 F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t-i~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 573 FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT-IYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc-eeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999999999999999999999999999999999999874 778888444 466668999999999999999999998765
Q ss_pred Cc
Q 021484 265 QT 266 (312)
Q Consensus 265 ~~ 266 (312)
..
T Consensus 652 ~~ 653 (707)
T KOG0263|consen 652 IE 653 (707)
T ss_pred cc
Confidence 33
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-35 Score=231.86 Aligned_cols=238 Identities=15% Similarity=0.200 Sum_probs=194.9
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
.+||.++|.|+.|+|++ ..|++|+.|.++|+||+.+.. +....++|...|.+++|+|||+.||+
T Consensus 111 ~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~TeT---------------p~~t~KgH~~WVlcvawsPDgk~iAS 174 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDTET---------------PLFTCKGHKNWVLCVAWSPDGKKIAS 174 (480)
T ss_pred cCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCCCC---------------cceeecCCccEEEEEEECCCcchhhc
Confidence 37999999999999998 899999999999999999875 33333899999999999999999999
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe----cCCCCEEEEeccCceEEEEeccCC
Q 021484 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF----GPNDEYVMSGSDCGHLFIWKKKGG 180 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~----s~~~~~l~~~~~dg~v~iwd~~~~ 180 (312)
+. ||.|++||..++. ...+.+.+|... |++++|. .|..++|++++.||.++|||+..+
T Consensus 175 G~~dg~I~lwdpktg~---------------~~g~~l~gH~K~--It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~ 237 (480)
T KOG0271|consen 175 GSKDGSIRLWDPKTGQ---------------QIGRALRGHKKW--ITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG 237 (480)
T ss_pred cccCCeEEEecCCCCC---------------cccccccCcccc--eeEEeecccccCCCccceecccCCCCEEEEEccCc
Confidence 85 9999999998873 566889999966 9999992 346789999999999999999999
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhh----------ccCC-------
Q 021484 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKAN----------KQGR------- 242 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~----------~~~~------- 242 (312)
+++..+.+|+.+|+|+.|--+ .++++++.|++|++|+...+. +..+.+|...+-.++ .+.+
T Consensus 238 ~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~ 316 (480)
T KOG0271|consen 238 TCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKS 316 (480)
T ss_pred eEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCC
Confidence 999999999999999999543 479999999999999987765 355666654442211 1111
Q ss_pred ------------------CCceeEEecCCceEEEEEeccc----------Cccc-eeEeecCCCccCCCCCCCeEEEeec
Q 021484 243 ------------------EDHSRITLTPDVIMHVLRLQRR----------QTLA-YRERRYNAADFESDEEEGETYLLGF 293 (312)
Q Consensus 243 ------------------~~~~l~s~~~d~~i~i~~~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~ 293 (312)
++..+++++.|.++.+|+-... +.++ ...++|++..+++..-+-.|-.|+.
T Consensus 317 ~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g 396 (480)
T KOG0271|consen 317 FSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDG 396 (480)
T ss_pred hHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeC
Confidence 2356999999999999985332 2222 2388999999999888888888887
Q ss_pred CCCC
Q 021484 294 SDSD 297 (312)
Q Consensus 294 ~~~~ 297 (312)
.+|.
T Consensus 397 ~tGk 400 (480)
T KOG0271|consen 397 RTGK 400 (480)
T ss_pred CCcc
Confidence 7765
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=209.84 Aligned_cols=220 Identities=14% Similarity=0.269 Sum_probs=184.7
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
||+||++++++.++.+.. +|...|+++.|..+| +..++|++||+++|||++... +.
T Consensus 63 vRlyD~~S~np~Pv~t~e---------~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~--------------~q 118 (311)
T KOG0315|consen 63 VRLYDLNSNNPNPVATFE---------GHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLS--------------CQ 118 (311)
T ss_pred eEEEEccCCCCCceeEEe---------ccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcc--------------cc
Confidence 689999999988887653 478899999999999 899999999999999999855 22
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
+. ..|..+|+++..+|+..-|+++ .+|.|++||+... .+...+..... ..|.++.. .|+
T Consensus 119 R~--~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~----------------~c~~~liPe~~-~~i~sl~v-~~d 178 (311)
T KOG0315|consen 119 RN--YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN----------------SCTHELIPEDD-TSIQSLTV-MPD 178 (311)
T ss_pred hh--ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC----------------ccccccCCCCC-cceeeEEE-cCC
Confidence 22 3467899999999998877777 6999999999875 33333332222 44999998 899
Q ss_pred CCEEEEeccCceEEEEeccCC------eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC-CC-CCCCCCh
Q 021484 160 DEYVMSGSDCGHLFIWKKKGG------KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DF-PPLPDNA 231 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~-~~~~~~~ 231 (312)
|.+|+.+...|+.++|++-+. +++..++.|.+.+..+.+||++++||++|.|.+++||+..+. +. ..+.+|.
T Consensus 179 gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~ 258 (311)
T KOG0315|consen 179 GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQ 258 (311)
T ss_pred CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCC
Confidence 999999999999999997643 467788899999999999999999999999999999999887 32 4566788
Q ss_pred hhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484 232 EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 232 ~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
..+..++ ++.++++++++++|+..++|++..+.
T Consensus 259 rWvWdc~-FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 259 RWVWDCA-FSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred ceEEeee-eccCccEEEecCCCCceeecccccCc
Confidence 8887766 78899999999999999999988764
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-32 Score=206.94 Aligned_cols=240 Identities=15% Similarity=0.219 Sum_probs=197.5
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.+|++.|+.++..+.++.++++++.|.++.+|++..... ..+.++ ..+.+|...|..++.+++|++.+++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~----~~G~~~------r~~~GHsH~v~dv~~s~dg~~alS~ 81 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDI----KYGVPV------RRLTGHSHFVSDVVLSSDGNFALSA 81 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCcc----ccCcee------eeeeccceEecceEEccCCceEEec
Confidence 469999999999999889999999999999999986631 112222 2338899999999999999999997
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
+ |+++++||+.++ +..+.|.+|... |.+++| +++.+++++|+.|.+|++|+.. +.+..+
T Consensus 82 swD~~lrlWDl~~g----------------~~t~~f~GH~~d--Vlsva~-s~dn~qivSGSrDkTiklwnt~-g~ck~t 141 (315)
T KOG0279|consen 82 SWDGTLRLWDLATG----------------ESTRRFVGHTKD--VLSVAF-STDNRQIVSGSRDKTIKLWNTL-GVCKYT 141 (315)
T ss_pred cccceEEEEEecCC----------------cEEEEEEecCCc--eEEEEe-cCCCceeecCCCcceeeeeeec-ccEEEE
Confidence 5 999999999998 789999999977 999999 9999999999999999999997 455555
Q ss_pred eecC--ccceEEEEEcCC--CCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484 186 MVGD--RHVVNQLEPHPH--IPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 186 ~~~~--~~~v~~~~~~p~--~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
+..+ .+.|+++.|+|+ ..++++++.|++|++||+++.++ .++.+|...+ ....+++|+.+.++|+.|+.+.+||
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v-~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV-NTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE-EEEEECCCCCEEecCCCCceEEEEE
Confidence 5433 789999999998 67899999999999999999986 5566776666 4455899999999999999999999
Q ss_pred ecccCcccee---------EeecCCCccCCCCCCCeEEEeecCCCCC
Q 021484 261 LQRRQTLAYR---------ERRYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 261 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
++....+-+. .++|+..-+....++ .|.+||.+.+..
T Consensus 221 L~~~k~lysl~a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~ 266 (315)
T KOG0279|consen 221 LNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAV 266 (315)
T ss_pred ccCCceeEeccCCCeEeeEEecCCceeEeeccCC-ceEEEeccchhh
Confidence 9876543221 566666665544333 388888877653
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.4e-33 Score=209.42 Aligned_cols=203 Identities=14% Similarity=0.177 Sum_probs=167.1
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
+.||+..|..+..++++ ++.++++.|+++++||+.+++ ....+.+|...|.+++|+++.+.+++
T Consensus 59 ~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~g~---------------~t~~f~GH~~dVlsva~s~dn~qivS 122 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLATGE---------------STRRFVGHTKDVLSVAFSTDNRQIVS 122 (315)
T ss_pred eeccceEecceEEccCC-ceEEeccccceEEEEEecCCc---------------EEEEEEecCCceEEEEecCCCceeec
Confidence 35799999999999999 899999999999999999986 23333899999999999999999999
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC--CCEEEEeccCceEEEEeccCCee
Q 021484 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~--~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
++ |.+|.+|++... +..++..+.....|.++.| +|+ ..+|++++.|++|++||+++.+.
T Consensus 123 GSrDkTiklwnt~g~-----------------ck~t~~~~~~~~WVscvrf-sP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 123 GSRDKTIKLWNTLGV-----------------CKYTIHEDSHREWVSCVRF-SPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred CCCcceeeeeeeccc-----------------EEEEEecCCCcCcEEEEEE-cCCCCCcEEEEccCCceEEEEccCCcch
Confidence 85 999999999775 4444444432356999999 887 78999999999999999999999
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
...+.+|++.++.+++||||..+++|+.||.+.+||++.++.....++...+ ....++|+.-.|+. ..+..|+||++.
T Consensus 185 ~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v-~sl~fspnrywL~~-at~~sIkIwdl~ 262 (315)
T KOG0279|consen 185 RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIV-NSLCFSPNRYWLCA-ATATSIKIWDLE 262 (315)
T ss_pred hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeE-eeEEecCCceeEee-ccCCceEEEecc
Confidence 9999999999999999999999999999999999999988753333344444 44446665444444 445559999987
Q ss_pred cc
Q 021484 263 RR 264 (312)
Q Consensus 263 ~~ 264 (312)
..
T Consensus 263 ~~ 264 (315)
T KOG0279|consen 263 SK 264 (315)
T ss_pred ch
Confidence 65
No 9
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.7e-31 Score=198.23 Aligned_cols=206 Identities=18% Similarity=0.295 Sum_probs=176.0
Q ss_pred CCCccceEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 27 PMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
+||++++..++|+|- | .+||+++.|+.|++|+...+.- ..|...+-.+|+..|.+++|+|.|++|++
T Consensus 11 ~gh~~r~W~~awhp~~g-~ilAscg~Dk~vriw~~~~~~s-----------~~ck~vld~~hkrsVRsvAwsp~g~~La~ 78 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKG-VILASCGTDKAVRIWSTSSGDS-----------WTCKTVLDDGHKRSVRSVAWSPHGRYLAS 78 (312)
T ss_pred cCCCCcEEEEEeccCCc-eEEEeecCCceEEEEecCCCCc-----------EEEEEeccccchheeeeeeecCCCcEEEE
Confidence 469999999999997 5 7999999999999999985320 11444454689999999999999999999
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC---e
Q 021484 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---K 181 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~---~ 181 (312)
++ |.++.||.-..+ .++++.++.||.+. |.+++| +++|++||+++.|+.|.||..... +
T Consensus 79 aSFD~t~~Iw~k~~~--------------efecv~~lEGHEnE--VK~Vaw-s~sG~~LATCSRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDG--------------EFECVATLEGHENE--VKCVAW-SASGNYLATCSRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred eeccceEEEeecCCC--------------ceeEEeeeeccccc--eeEEEE-cCCCCEEEEeeCCCeEEEEEecCCCcEE
Confidence 86 999999987654 33678899999987 999999 999999999999999999998743 5
Q ss_pred eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC-CCC---CCCCCCChhhhhhhhccCCCCceeEEecCCceEE
Q 021484 182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH 257 (312)
Q Consensus 182 ~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 257 (312)
+...++.|+..|..+.|||...+|++++.|.+|++|+-. ... ..++.+|...+.... +.+.+..|++++.|++++
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~-F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLA-FDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEE-ecCCCceEEEecCCcceE
Confidence 778899999999999999999999999999999999876 332 467778887775554 667788999999999999
Q ss_pred EEEec
Q 021484 258 VLRLQ 262 (312)
Q Consensus 258 i~~~~ 262 (312)
||...
T Consensus 221 Iw~~~ 225 (312)
T KOG0645|consen 221 IWRLY 225 (312)
T ss_pred eeeec
Confidence 99844
No 10
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-32 Score=213.76 Aligned_cols=248 Identities=17% Similarity=0.247 Sum_probs=193.8
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++||..+-.+..++. ||.+.|.|+.|.. +.+++|++|.+|++||..+++ +.
T Consensus 219 ikiWD~n~~~c~~~L~-----------GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge--------------~l 270 (499)
T KOG0281|consen 219 IKIWDKNSLECLKILT-----------GHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGE--------------PL 270 (499)
T ss_pred eEEeccccHHHHHhhh-----------cCCCcEEeeeccc---eEEEecCCCceEEEEeccCCc--------------hh
Confidence 5778877766555554 4899999999975 699999999999999999998 33
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+ .+|.+.|..+.|+. .+++++ .|..+.+||+.... ...+.+.+.||... |..+.| +
T Consensus 271 ~tl-ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps-------------~it~rrVLvGHrAa--VNvVdf---d 329 (499)
T KOG0281|consen 271 NTL-IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT-------------DITLRRVLVGHRAA--VNVVDF---D 329 (499)
T ss_pred hHH-hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCch-------------HHHHHHHHhhhhhh--eeeecc---c
Confidence 333 78999999999974 377776 59999999997651 11355778899977 999988 4
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN 238 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~ 238 (312)
.+++++++.|.+|++|++.+++.++++.+|...|.|+.+ .++++++|+.|.+|++||+..+.. ..+.+|..-+ .+.
T Consensus 330 ~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLv-Rci 406 (499)
T KOG0281|consen 330 DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV-RCI 406 (499)
T ss_pred cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhh-hhe
Confidence 679999999999999999999999999999999999887 889999999999999999999874 6667666655 333
Q ss_pred ccCCCCceeEEecCCceEEEEEecccCcc-----------------ceeEeecCCCccCCCCCCCeEEEeecCCCCCCCC
Q 021484 239 KQGREDHSRITLTPDVIMHVLRLQRRQTL-----------------AYRERRYNAADFESDEEEGETYLLGFSDSDASSE 301 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 301 (312)
--+...+++|+.||.+++||+.....+ ..+..+.+...+.+...+..+++|||.++-....
T Consensus 407 --RFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~~~~~ 484 (499)
T KOG0281|consen 407 --RFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGPPSAA 484 (499)
T ss_pred --eecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCCcccc
Confidence 235678999999999999998764322 1112233444444444445599999988866544
Q ss_pred C
Q 021484 302 G 302 (312)
Q Consensus 302 ~ 302 (312)
+
T Consensus 485 ~ 485 (499)
T KOG0281|consen 485 E 485 (499)
T ss_pred c
Confidence 3
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.6e-31 Score=200.28 Aligned_cols=253 Identities=15% Similarity=0.160 Sum_probs=199.5
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||...|+++.|+++. +.+++++.||.+.|||.-+.. .. +.+.-....|...+|+|.|+++|.+
T Consensus 52 kGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~Ttn--------------K~-haipl~s~WVMtCA~sPSg~~VAcG 115 (343)
T KOG0286|consen 52 KGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFTTN--------------KV-HAIPLPSSWVMTCAYSPSGNFVACG 115 (343)
T ss_pred cccccceeeeEecCCc-CeEEeeccCCeEEEEEccccc--------------ce-eEEecCceeEEEEEECCCCCeEEec
Confidence 4799999999999998 899999999999999998775 11 2224456789999999999999997
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
. |+...||++.+...... .+..+.+.+|.. ++.++.| - +...|++++.|.+..+||+.+++.+..
T Consensus 116 GLdN~Csiy~ls~~d~~g~----------~~v~r~l~gHtg--ylScC~f-~-dD~~ilT~SGD~TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEGN----------VRVSRELAGHTG--YLSCCRF-L-DDNHILTGSGDMTCALWDIETGQQTQV 181 (343)
T ss_pred CcCceeEEEeccccccccc----------ceeeeeecCccc--eeEEEEE-c-CCCceEecCCCceEEEEEcccceEEEE
Confidence 5 99999999985411100 134567889985 4999999 4 467789999999999999999999999
Q ss_pred eecCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 186 MVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
|.+|.+.|.+++++| +++.+++|+-|++.+|||++.+. .+++.+|...+ ....+.|++.-+++|+.|++.+++|++.
T Consensus 182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDI-Nsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDI-NSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccccc-ceEEEccCCCeeeecCCCceeEEEeecC
Confidence 999999999999999 89999999999999999999876 58899998888 4455788999999999999999999998
Q ss_pred cCcccee------------EeecCCCccCCCCCCCeEEEeecCCCCCCCCCC--Cceeeee
Q 021484 264 RQTLAYR------------ERRYNAADFESDEEEGETYLLGFSDSDASSEGG--GNQRECI 310 (312)
Q Consensus 264 ~~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~ 310 (312)
.+.+... .++..+..+..+-++..+++||.-.++...... ++.-.|+
T Consensus 261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL 321 (343)
T ss_pred CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE
Confidence 6555443 233334444444555556777765555433222 5555553
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.8e-32 Score=229.66 Aligned_cols=246 Identities=16% Similarity=0.198 Sum_probs=206.5
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCC-----------------CCcccccccccccCCCccEE
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSD-----------------TPVDTFCPRHLIGKNNIHIT 92 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~i~ 92 (312)
...++|..|++++ .++|.|..|..|++|.+...++....... ...... ....+.+|.++|.
T Consensus 378 ~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~-~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 378 YQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG-TSRTLYGHSGPVY 455 (707)
T ss_pred CCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc-eeEEeecCCCcee
Confidence 3579999999998 79999999999999999854432211100 000111 1222479999999
Q ss_pred EEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCce
Q 021484 93 GLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH 171 (312)
Q Consensus 93 ~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~ 171 (312)
...|+|+.++|++++ |+++|+|.+.+. .++..++||..+ |..+.| +|-|.|+|+++.|++
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~----------------s~~V~y~GH~~P--VwdV~F-~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTW----------------SCLVIYKGHLAP--VWDVQF-APRGYYFATASHDQT 516 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccc----------------eeEEEecCCCcc--eeeEEe-cCCceEEEecCCCce
Confidence 999999999999975 999999999988 788899999977 999999 899999999999999
Q ss_pred EEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEe
Q 021484 172 LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITL 250 (312)
Q Consensus 172 v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~ 250 (312)
-++|.....++++.+.+|-+.|.|+.|||+..|++|||.|.++|+||..++. +..+.+|..++.. ..+++.+++|+++
T Consensus 517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~a-l~~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTA-LAFSPCGRYLASG 595 (707)
T ss_pred eeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEE-EEEcCCCceEeec
Confidence 9999999999999999999999999999999999999999999999999886 4667888888754 4589999999999
Q ss_pred cCCceEEEEEecccC---------cccee-EeecCCCccCCCCCCCeEEEeecCCCC
Q 021484 251 TPDVIMHVLRLQRRQ---------TLAYR-ERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 251 ~~d~~i~i~~~~~~~---------~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
+.|+.|++||+.... ..++. .++.++.-++++..++.|.+||+..-.
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 999999999987632 22333 889999999999999999999985543
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-31 Score=212.61 Aligned_cols=214 Identities=17% Similarity=0.260 Sum_probs=183.8
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-C
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d 108 (312)
...|++++|+.+| .+||+|+.||.+++|+..... ... +..|.++|.++.|+..|.+|++++ |
T Consensus 235 nkdVT~L~Wn~~G-~~LatG~~~G~~riw~~~G~l---------------~~t-l~~HkgPI~slKWnk~G~yilS~~vD 297 (524)
T KOG0273|consen 235 NKDVTSLDWNNDG-TLLATGSEDGEARIWNKDGNL---------------IST-LGQHKGPIFSLKWNKKGTYILSGGVD 297 (524)
T ss_pred cCCcceEEecCCC-CeEEEeecCcEEEEEecCchh---------------hhh-hhccCCceEEEEEcCCCCEEEeccCC
Confidence 4679999999999 899999999999999987543 112 278999999999999999999975 9
Q ss_pred CcEEEEEcCCCc-------------------------CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE
Q 021484 109 ELVYLFEKNMGL-------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 163 (312)
Q Consensus 109 ~~i~iwd~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l 163 (312)
+++.+||..++. ...+..+.+..+..-.+..++.+|.+. |.++.| +|.+.+|
T Consensus 298 ~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~--V~alk~-n~tg~LL 374 (524)
T KOG0273|consen 298 GTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE--VNALKW-NPTGSLL 374 (524)
T ss_pred ccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCc--eEEEEE-CCCCceE
Confidence 999999997664 112233444445566788999999977 999999 9999999
Q ss_pred EEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC---------CeEEEEeCCCcEEEccCCCCC-CCCCCCChhh
Q 021484 164 MSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI---------PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEK 233 (312)
Q Consensus 164 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~---------~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~ 233 (312)
++++.|++++||++........+.+|...|+.+.|+|+| ..+++++.|++|++||+..+. +..+..|..+
T Consensus 375 aS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p 454 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP 454 (524)
T ss_pred EEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc
Confidence 999999999999999899999999999999999999976 358999999999999998876 5778789999
Q ss_pred hhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 234 IMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 234 ~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
++... ++++++++++|+.|+.+.+|+.+..
T Consensus 455 Vysva-fS~~g~ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 455 VYSVA-FSPNGRYLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred eEEEE-ecCCCcEEEecCCCCeeEeccccch
Confidence 86655 8999999999999999999998765
No 14
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1e-30 Score=225.58 Aligned_cols=236 Identities=18% Similarity=0.316 Sum_probs=198.8
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
|...|.++.|+|++ +.+++++.++.+++|+....+. .....+ .+|...|..++|+|++++++++ .
T Consensus 158 ~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~~------------~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~ 223 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIKS------------NLLREL-SGHTRGVSDVAFSPDGSYLLSGSD 223 (456)
T ss_pred ccCceEEEEEcCCC-CeEEEccCCCcEEEeecccccc------------hhhccc-cccccceeeeEECCCCcEEEEecC
Confidence 47789999999999 7899999999999999965541 011222 7899999999999999999997 5
Q ss_pred CCcEEEEEcC-CCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 108 DELVYLFEKN-MGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 108 d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
|++|++||+. .+ ..++++.+|... |++++| +|.++++++|+.|++|++||+++++++..+
T Consensus 224 D~tiriwd~~~~~----------------~~~~~l~gH~~~--v~~~~f-~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l 284 (456)
T KOG0266|consen 224 DKTLRIWDLKDDG----------------RNLKTLKGHSTY--VTSVAF-SPDGNLLVSGSDDGTVRIWDVRTGECVRKL 284 (456)
T ss_pred CceEEEeeccCCC----------------eEEEEecCCCCc--eEEEEe-cCCCCEEEEecCCCcEEEEeccCCeEEEee
Confidence 9999999993 33 688999999976 999999 999999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC---CCCCCCChhh-hhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEK-IMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
.+|.+.|++++|++++++|++++.|+.|++||+.++. ...+.++... .+....+++++.+++++..|+.+++|+++
T Consensus 285 ~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 285 KGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR 364 (456)
T ss_pred eccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence 9999999999999999999999999999999999988 3456655555 67788899999999999999999999987
Q ss_pred ccCcccee-------------EeecCCCccCCCCCCCeEEEeecCCCC
Q 021484 263 RRQTLAYR-------------ERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 263 ~~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
........ ...+.+..+.++..++.|++++.+.+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 365 SGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred CCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 54211111 224456667777888889999987654
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-30 Score=197.83 Aligned_cols=223 Identities=16% Similarity=0.229 Sum_probs=183.4
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
+.|||..+.+....+... ..-|..++|+|.+ +++|.|+-|....||++.+.+-.. .+ ..
T Consensus 79 lIvWDs~TtnK~haipl~-----------s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g------~~---~v 137 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLP-----------SSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEG------NV---RV 137 (343)
T ss_pred EEEEEcccccceeEEecC-----------ceeEEEEEECCCC-CeEEecCcCceeEEEecccccccc------cc---ee
Confidence 357887665433333332 4459999999999 899999999999999998653110 00 22
Q ss_pred cccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-C
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-N 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~ 159 (312)
...+.+|.+.+.++.|-+++++|.++.|.+..+||++++ +.++.|.+|... |.++++ +| +
T Consensus 138 ~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g----------------~~~~~f~GH~gD--V~slsl-~p~~ 198 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG----------------QQTQVFHGHTGD--VMSLSL-SPSD 198 (343)
T ss_pred eeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc----------------eEEEEecCCccc--EEEEec-CCCC
Confidence 333489999999999999887777778999999999999 899999999987 999999 88 9
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChh--hhhh
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAE--KIMK 236 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~--~~~~ 236 (312)
++.+++|+-|+..++||++.+.+++.|.+|...|+++.|.|+|.-|++|+.|++.|+||++... +..+. +.. ..+.
T Consensus 199 ~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-~~~~~~git 277 (343)
T KOG0286|consen 199 GNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-HDSIICGIT 277 (343)
T ss_pred CCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-cCcccCCce
Confidence 9999999999999999999999999999999999999999999999999999999999999865 33332 222 2245
Q ss_pred hhccCCCCceeEEecCCceEEEEEeccc
Q 021484 237 ANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 237 ~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
...++..+++|+++..|..+.+||.-..
T Consensus 278 Sv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 278 SVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred eEEEcccccEEEeeecCCceeEeecccc
Confidence 5567889999999999999999995433
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=7.4e-32 Score=213.00 Aligned_cols=229 Identities=17% Similarity=0.297 Sum_probs=190.1
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-C
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d 108 (312)
+.+|..+.|.|+| +.|++|+..|.+.+|+..+. ....++..|..+|.++.|+++|.+++++. +
T Consensus 96 kc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~f---------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g 159 (464)
T KOG0284|consen 96 KCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTSF---------------NFETILQAHDSPVRTMKWSHNGTWMISGDKG 159 (464)
T ss_pred ccceeeEEEcCCC-ceeEeecccccEEEecCcee---------------eHHHHhhhhcccceeEEEccCCCEEEEcCCC
Confidence 5689999999999 89999999999999998543 45566689999999999999999999985 9
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
|.|++|+.... .++.+..|.. ..|++++| +|+...++++++||+|+|||..-.+....+.+
T Consensus 160 G~iKyWqpnmn-----------------nVk~~~ahh~-eaIRdlaf-SpnDskF~t~SdDg~ikiWdf~~~kee~vL~G 220 (464)
T KOG0284|consen 160 GMIKYWQPNMN-----------------NVKIIQAHHA-EAIRDLAF-SPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG 220 (464)
T ss_pred ceEEecccchh-----------------hhHHhhHhhh-hhhheecc-CCCCceeEEecCCCeEEEEeccCCchhheecc
Confidence 99999998764 5666666652 23999999 89999999999999999999998888889999
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021484 189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 189 ~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
|.-.|.+++|||....++++|.|..|++||.+++. +.++..|...++... +.+++++|++++.|..++++|++....+
T Consensus 221 HgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~-f~~n~N~Llt~skD~~~kv~DiR~mkEl 299 (464)
T KOG0284|consen 221 HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVK-FNPNGNWLLTGSKDQSCKVFDIRTMKEL 299 (464)
T ss_pred CCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEE-EcCCCCeeEEccCCceEEEEehhHhHHH
Confidence 99999999999999999999999999999999886 688888888886655 7777899999999999999999832111
Q ss_pred ---------cee-Eeec-CCCccCCCCCCCeEEEeecC
Q 021484 268 ---------AYR-ERRY-NAADFESDEEEGETYLLGFS 294 (312)
Q Consensus 268 ---------~~~-~~~~-~~~~~~~~~~~~~v~~~~~~ 294 (312)
+.. .+.| ...-+.++..++.|+.+.+.
T Consensus 300 ~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 300 FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred HHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 111 2233 23344556677778777664
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.98 E-value=7.3e-31 Score=199.83 Aligned_cols=235 Identities=17% Similarity=0.225 Sum_probs=195.9
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
.+||++.|+.+.|+|+| .+||+|+.|..|.+|+..... .....+++|+++|..+.|.+++..+++
T Consensus 43 l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~gdc--------------eN~~~lkgHsgAVM~l~~~~d~s~i~S 107 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYGDC--------------ENFWVLKGHSGAVMELHGMRDGSHILS 107 (338)
T ss_pred cCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccccc--------------cceeeeccccceeEeeeeccCCCEEEE
Confidence 37999999999999988 899999999999999976443 233344799999999999999998888
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
+ .|.+++.||.+++ +..+.+++|..- |..+.-.....+++.+++.|+++++||+++..+++
T Consensus 108 ~gtDk~v~~wD~~tG----------------~~~rk~k~h~~~--vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~ 169 (338)
T KOG0265|consen 108 CGTDKTVRGWDAETG----------------KRIRKHKGHTSF--VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK 169 (338)
T ss_pred ecCCceEEEEecccc----------------eeeehhccccce--eeecCccccCCeEEEecCCCceEEEEeecccchhh
Confidence 6 5999999999999 889999999865 77775422234567789999999999999998888
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
++. ..-.++++.|..++..+.+|+-|+.|++||++.+. ...+.+|...+... ..++++.++.+-+.|..+++||++.
T Consensus 170 t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~l-sls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 170 TFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGL-SLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred ccc-cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeE-EeccCCCccccccccceEEEEEecc
Confidence 775 34578999999999999999999999999998887 47788888888554 4788999999999999999999875
Q ss_pred cC------------------ccceeEeecCCCccCCCCCCCeEEEeecCC
Q 021484 264 RQ------------------TLAYRERRYNAADFESDEEEGETYLLGFSD 295 (312)
Q Consensus 264 ~~------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 295 (312)
.. .+....++|+...+..+..+..+|+||...
T Consensus 248 ~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 248 FAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred cCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 32 122236688888888888888899998754
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.98 E-value=2.3e-31 Score=207.21 Aligned_cols=237 Identities=17% Similarity=0.287 Sum_probs=194.5
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||.+-|.|+++.|-+ ..|++|+.|++|+|||+.++++ +..+.+|...|..+++++-..|++++
T Consensus 148 ~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlatg~L---------------kltltGhi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLATGQL---------------KLTLTGHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred hhccceEEEEeeCCCc-eeEEecCCCceeEEEEcccCeE---------------EEeecchhheeeeeeecccCceEEEe
Confidence 4899999999999987 8999999999999999999974 22237899999999999998899986
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
.|++|+.||++.+ +.++.+.||... |.+++. .|.-..|++|+.|.++++||+++...+..
T Consensus 212 gedk~VKCwDLe~n----------------kvIR~YhGHlS~--V~~L~l-hPTldvl~t~grDst~RvWDiRtr~~V~~ 272 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYN----------------KVIRHYHGHLSG--VYCLDL-HPTLDVLVTGGRDSTIRVWDIRTRASVHV 272 (460)
T ss_pred cCCCeeEEEechhh----------------hhHHHhccccce--eEEEec-cccceeEEecCCcceEEEeeecccceEEE
Confidence 6999999999988 899999999977 999998 89999999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
+.+|..+|..+.+.|....+++|+.|++|++||++.++- .++..|...+ .....++....++++++|. ++-|++..+
T Consensus 273 l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksv-ral~lhP~e~~fASas~dn-ik~w~~p~g 350 (460)
T KOG0285|consen 273 LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSV-RALCLHPKENLFASASPDN-IKQWKLPEG 350 (460)
T ss_pred ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeeccccee-eEEecCCchhhhhccCCcc-ceeccCCcc
Confidence 999999999999999999999999999999999998874 5555454444 4444666666677777664 678877654
Q ss_pred Cccce---------eEeecCCCccCCCCCCCeEEEeecCCCCCCC
Q 021484 265 QTLAY---------RERRYNAADFESDEEEGETYLLGFSDSDASS 300 (312)
Q Consensus 265 ~~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 300 (312)
.-+.. .-.......+.++.|.|.+.++|..++-.-.
T Consensus 351 ~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 351 EFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred chhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccc
Confidence 32211 1122223445567788888888887775443
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=1.5e-31 Score=211.25 Aligned_cols=200 Identities=13% Similarity=0.219 Sum_probs=178.0
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.|..+|+++.|++++ ..+++|..+|.|++|+..-.. ++.+...|...|++++|+|+...++++
T Consensus 136 aHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnn---------------Vk~~~ahh~eaIRdlafSpnDskF~t~S 199 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNN---------------VKIIQAHHAEAIRDLAFSPNDSKFLTCS 199 (464)
T ss_pred hhcccceeEEEccCC-CEEEEcCCCceEEecccchhh---------------hHHhhHhhhhhhheeccCCCCceeEEec
Confidence 488999999999999 899999999999999987542 223324556999999999988888886
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.||.|+|||.... +..+.+.+|.-. |.+++| +|...++++|+.|..|++||.++++++.++
T Consensus 200 dDg~ikiWdf~~~----------------kee~vL~GHgwd--VksvdW-HP~kgLiasgskDnlVKlWDprSg~cl~tl 260 (464)
T KOG0284|consen 200 DDGTIKIWDFRMP----------------KEERVLRGHGWD--VKSVDW-HPTKGLIASGSKDNLVKLWDPRSGSCLATL 260 (464)
T ss_pred CCCeEEEEeccCC----------------chhheeccCCCC--cceecc-CCccceeEEccCCceeEeecCCCcchhhhh
Confidence 5999999999887 677888999877 999999 899999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC-CCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
.+|+..|..+.|+|++++|+|+|.|..++++|+++. ++..+.+|.+.+....|......++.+++.|+.+..|.+.
T Consensus 261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 999999999999999999999999999999999954 5788889999997777555588899999999999999876
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=2.6e-30 Score=218.60 Aligned_cols=201 Identities=17% Similarity=0.332 Sum_probs=171.8
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
-||..++++++++|+| +++|||+.||+|+|||..++- |..++ ..|+..|+.+.|+..|+.++++
T Consensus 347 QgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~Sgf--------------C~vTF-teHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQSGF--------------CFVTF-TEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred cccccceeeEEECCCC-cEEEeccCCCcEEEEeccCce--------------EEEEe-ccCCCceEEEEEEecCCEEEEe
Confidence 3689999999999999 899999999999999999886 55555 8899999999999999988886
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc-eEEEEeccCCeeEE
Q 021484 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG-HLFIWKKKGGKLVR 184 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg-~v~iwd~~~~~~~~ 184 (312)
+ ||+|+.||+... +.-++|..... ....+++. +|.|..+.+|+.|. .|++|++++|+.+-
T Consensus 411 SLDGtVRAwDlkRY----------------rNfRTft~P~p-~Qfscvav-D~sGelV~AG~~d~F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRY----------------RNFRTFTSPEP-IQFSCVAV-DPSGELVCAGAQDSFEIFVWSVQTGQLLD 472 (893)
T ss_pred ecCCeEEeeeeccc----------------ceeeeecCCCc-eeeeEEEE-cCCCCEEEeeccceEEEEEEEeecCeeee
Confidence 5 999999999877 56667765432 33678887 89999999998877 59999999999999
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC--CCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
.+.+|.++|.+++|+|.+..|+++|.|++||+||+-.. ...++. ....++. ..+.|++..++..+-||.|.+||++
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~-vsfrPdG~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLA-VSFRPDGKELAVATLDGQITFFDIK 550 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeE-EEEcCCCCeEEEEEecceEEEEEhh
Confidence 99999999999999999999999999999999998765 445554 3334433 3478899999999999999999975
Q ss_pred c
Q 021484 263 R 263 (312)
Q Consensus 263 ~ 263 (312)
.
T Consensus 551 ~ 551 (893)
T KOG0291|consen 551 E 551 (893)
T ss_pred h
Confidence 4
No 21
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.6e-30 Score=221.02 Aligned_cols=206 Identities=18% Similarity=0.358 Sum_probs=176.0
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-eecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
.+|...|++++|+|++ .++++++.|++|++||+... . +.+.+ .+|...|++++|+|+|+++++
T Consensus 200 ~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~--------------~~~~l-~gH~~~v~~~~f~p~g~~i~S 263 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGR--------------NLKTL-KGHSTYVTSVAFSPDGNLLVS 263 (456)
T ss_pred cccccceeeeEECCCC-cEEEEecCCceEEEeeccCCCe--------------EEEEe-cCCCCceEEEEecCCCCEEEE
Confidence 4699999999999999 79999999999999999433 3 33334 799999999999999999999
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe--e
Q 021484 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--L 182 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~ 182 (312)
+ .|++|++||++++ ++.+.+.+|... |++++| ++++++|++++.|+.|++||+.+++ +
T Consensus 264 gs~D~tvriWd~~~~----------------~~~~~l~~hs~~--is~~~f-~~d~~~l~s~s~d~~i~vwd~~~~~~~~ 324 (456)
T KOG0266|consen 264 GSDDGTVRIWDVRTG----------------ECVRKLKGHSDG--ISGLAF-SPDGNLLVSASYDGTIRVWDLETGSKLC 324 (456)
T ss_pred ecCCCcEEEEeccCC----------------eEEEeeeccCCc--eEEEEE-CCCCCEEEEcCCCccEEEEECCCCceee
Confidence 7 5999999999998 899999999977 999999 9999999999999999999999998 5
Q ss_pred EEEeecCccc--eEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhh--hhhhccCCCCceeEEecCCceEE
Q 021484 183 VRLMVGDRHV--VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI--MKANKQGREDHSRITLTPDVIMH 257 (312)
Q Consensus 183 ~~~~~~~~~~--v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~d~~i~ 257 (312)
+..+..+... ++.++|+|++.++++++.|+++++||+.... ...+.+|.... +........+.++++++.|+.++
T Consensus 325 ~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~ 404 (456)
T KOG0266|consen 325 LKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVY 404 (456)
T ss_pred eecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEE
Confidence 6777766544 9999999999999999999999999999775 45555565542 22222345789999999999999
Q ss_pred EEEecccCcc
Q 021484 258 VLRLQRRQTL 267 (312)
Q Consensus 258 i~~~~~~~~~ 267 (312)
+|++.+....
T Consensus 405 ~~~~~s~~~~ 414 (456)
T KOG0266|consen 405 VWDSSSGGIL 414 (456)
T ss_pred EEeCCccchh
Confidence 9998875444
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=188.20 Aligned_cols=251 Identities=15% Similarity=0.273 Sum_probs=205.1
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
||+|...++.+...++-. ...|+.+...|++ ..||+++. ..||+||+++.. +.|+.+|
T Consensus 22 IRfWqa~tG~C~rTiqh~-----------dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~n-------p~Pv~t~-- 79 (311)
T KOG0315|consen 22 IRFWQALTGICSRTIQHP-----------DSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSNN-------PNPVATF-- 79 (311)
T ss_pred eeeeehhcCeEEEEEecC-----------ccceeeEEEcCCc-chhhhccC-CeeEEEEccCCC-------CCceeEE--
Confidence 689999999887777654 3459999999998 67777764 789999999887 3456655
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
.+|...|+++.|.-+|+.++++ .||+++|||++.. .+.+.++ +..+ |+++.. +|+
T Consensus 80 ----e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~----------------~~qR~~~-~~sp--Vn~vvl-hpn 135 (311)
T KOG0315|consen 80 ----EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSL----------------SCQRNYQ-HNSP--VNTVVL-HPN 135 (311)
T ss_pred ----eccCCceEEEEEeecCeEEEecCCCceEEEEeccCc----------------ccchhcc-CCCC--cceEEe-cCC
Confidence 8899999999999999999997 5999999999985 4545554 5544 999998 899
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-------CCCCCCCh
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-------FPPLPDNA 231 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-------~~~~~~~~ 231 (312)
...|++|..+|.|++||+....+...+. .....|.++...|+|.+++.+..-|+.++|++-... +..++.|.
T Consensus 136 QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~ 215 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN 215 (311)
T ss_pred cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc
Confidence 9999999999999999999876666553 344689999999999999999999999999976532 23455677
Q ss_pred hhhhhhhccCCCCceeEEecCCceEEEEEeccc----------Ccccee-EeecCCCccCCCCCCCeEEEeecCCCCC
Q 021484 232 EKIMKANKQGREDHSRITLTPDVIMHVLRLQRR----------QTLAYR-ERRYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 232 ~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
..++.+. .+++..+|++.++|.+++||+.... +...|- .++.++.++...+.+..+-.|+.+.+.+
T Consensus 216 ~~il~C~-lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 216 GHILRCL-LSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE 292 (311)
T ss_pred ceEEEEE-ECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCce
Confidence 7776665 7899999999999999999987654 223343 7888999999998888899999887764
No 23
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.1e-30 Score=213.98 Aligned_cols=218 Identities=16% Similarity=0.179 Sum_probs=189.8
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|.+||..+..-.+.+.+. ..||.+..|-+.. +.+++|+.|..|++|+..+++ .+
T Consensus 37 V~IWnyetqtmVksfeV~-----------~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt~e--------------kV 90 (794)
T KOG0276|consen 37 VQIWNYETQTMVKSFEVS-----------EVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNTGE--------------KV 90 (794)
T ss_pred eEEEecccceeeeeeeec-----------ccchhhheeeecc-ceEEEecCCceEEEEecccce--------------ee
Confidence 578998877666666654 3469999999987 899999999999999999987 33
Q ss_pred cccccCCCccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+ ..|.+-|.+++.+|...++.+++ |-+|++||-+++. .+.++|.||..- |.+++|.+.+
T Consensus 91 ~~F-eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w---------------a~~qtfeGH~Hy--VMqv~fnPkD 152 (794)
T KOG0276|consen 91 KTF-EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW---------------ACEQTFEGHEHY--VMQVAFNPKD 152 (794)
T ss_pred EEe-eccccceeeeeecCCCCeEEecCCccEEEEeeccCce---------------eeeeEEcCcceE--EEEEEecCCC
Confidence 333 89999999999999999888874 8899999998863 788999999966 9999995557
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC--CeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhh
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI--PMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMK 236 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~--~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~ 236 (312)
.+.+++++.|++|+||.+.+..+..++++|...|+++.+-+.| ++|++|+.|.+|+|||.++.. +.++.+|...+ .
T Consensus 153 ~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nv-s 231 (794)
T KOG0276|consen 153 PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNV-S 231 (794)
T ss_pred ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccc-e
Confidence 8899999999999999999999999999999999999998755 689999999999999999876 58888898887 5
Q ss_pred hhccCCCCceeEEecCCceEEEEEecc
Q 021484 237 ANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 237 ~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
.+.++++-.++++|+.||++|+|+..+
T Consensus 232 ~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 232 FVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred EEEecCCCcEEEEecCCccEEEecCcc
Confidence 666888889999999999999998654
No 24
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.7e-30 Score=217.87 Aligned_cols=243 Identities=15% Similarity=0.225 Sum_probs=192.7
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
+||...|.++....+| .+|++|+.|.++++|.+..+.. ...+.... .+|...|.+++++..+. +|++
T Consensus 362 ~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~----------~~~~~a~~-~gH~~svgava~~~~~asffvs 429 (775)
T KOG0319|consen 362 PGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCS----------KSLCVAQA-NGHTNSVGAVAGSKLGASFFVS 429 (775)
T ss_pred eCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcc----------hhhhhhhh-cccccccceeeecccCccEEEE
Confidence 6899999999965666 7999999999999999954431 11122333 79999999999988774 8888
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
+ .|.++++|++...+.... ........+...|... |+++++ +|+.+++++|+.|.+.+||++.......
T Consensus 430 vS~D~tlK~W~l~~s~~~~~-------~~~~~~~~t~~aHdKd--IN~Vai-a~ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 430 VSQDCTLKLWDLPKSKETAF-------PIVLTCRYTERAHDKD--INCVAI-APNDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred ecCCceEEEecCCCcccccc-------cceehhhHHHHhhccc--ccceEe-cCCCceEEecccccceeeecccCceEEE
Confidence 6 599999999976211100 0000122233456644 999999 9999999999999999999999999999
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
++.+|+..|.+|.|+|..+.++|+|.|++|+||.+.+.. +.++.+|...++... +-.++..|+++++||.+++|++++
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~-F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRAS-FIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeee-eeeCCcEEEeccCCCcEEEEeccc
Confidence 999999999999999999999999999999999999987 588999999997665 667889999999999999999876
Q ss_pred c---------Ccccee-EeecCCCccCCCCCCCeEEEee
Q 021484 264 R---------QTLAYR-ERRYNAADFESDEEEGETYLLG 292 (312)
Q Consensus 264 ~---------~~~~~~-~~~~~~~~~~~~~~~~~v~~~~ 292 (312)
. +..+|. ...+....+.++..++++.+|.
T Consensus 579 ~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 579 NECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred hhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 4 233444 4455556667777777787774
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=5.1e-30 Score=199.93 Aligned_cols=198 Identities=13% Similarity=0.208 Sum_probs=174.2
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||...|.+++|-|.| ..+++++.|.+|+.|++.++. |.+.+ .+|.+.|..++.+.||.+++++
T Consensus 190 ~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~--------------cv~t~-~~h~ewvr~v~v~~DGti~As~ 253 (406)
T KOG0295|consen 190 IGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGY--------------CVKTF-PGHSEWVRMVRVNQDGTIIASC 253 (406)
T ss_pred cCcccceeeEEEEecC-CeeeecccccceeEEecccce--------------eEEec-cCchHhEEEEEecCCeeEEEec
Confidence 3688999999999999 899999999999999999997 55555 8899999999999999999997
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC---------------CCEEEEeccCc
Q 021484 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---------------DEYVMSGSDCG 170 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~---------------~~~l~~~~~dg 170 (312)
+ |.+|++|-+.++ .+...++.|..+ |.+++| .|. ++++.+++.|+
T Consensus 254 s~dqtl~vW~~~t~----------------~~k~~lR~hEh~--vEci~w-ap~~~~~~i~~at~~~~~~~~l~s~SrDk 314 (406)
T KOG0295|consen 254 SNDQTLRVWVVATK----------------QCKAELREHEHP--VECIAW-APESSYPSISEATGSTNGGQVLGSGSRDK 314 (406)
T ss_pred CCCceEEEEEeccc----------------hhhhhhhccccc--eEEEEe-cccccCcchhhccCCCCCccEEEeecccc
Confidence 4 999999999887 677888899877 999998 342 36999999999
Q ss_pred eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEE
Q 021484 171 HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRIT 249 (312)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s 249 (312)
+|++||+.++.++.++.+|...|..++|+|.|+||+++..|+++++||++.+.. .++..|..-+ ....++.+..++++
T Consensus 315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfv-t~lDfh~~~p~VvT 393 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFV-TSLDFHKTAPYVVT 393 (406)
T ss_pred eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCccee-EEEecCCCCceEEe
Confidence 999999999999999999999999999999999999999999999999998864 5555444444 44456667779999
Q ss_pred ecCCceEEEEE
Q 021484 250 LTPDVIMHVLR 260 (312)
Q Consensus 250 ~~~d~~i~i~~ 260 (312)
|+-|..+++|.
T Consensus 394 GsVdqt~KvwE 404 (406)
T KOG0295|consen 394 GSVDQTVKVWE 404 (406)
T ss_pred ccccceeeeee
Confidence 99999999996
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1e-29 Score=204.35 Aligned_cols=213 Identities=13% Similarity=0.180 Sum_probs=174.9
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCC---------------------Ccc-----cccccc
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDT---------------------PVD-----TFCPRH 82 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------------~~~-----~~~~~~ 82 (312)
|++||.++.|+..| .+|++++.|+++.+||..++.+........ .+. .-.+..
T Consensus 275 HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~ 353 (524)
T KOG0273|consen 275 HKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVK 353 (524)
T ss_pred cCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcce
Confidence 89999999999999 899999999999999998776543221100 000 001222
Q ss_pred cccCCCccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-
Q 021484 83 LIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND- 160 (312)
Q Consensus 83 ~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~- 160 (312)
.+.+|.+.|.++.|+|.|.+|++++ |++++||..... .....+.+|... |..+.| +|.+
T Consensus 354 t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~----------------~~~~~l~~Hske--i~t~~w-sp~g~ 414 (524)
T KOG0273|consen 354 TFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS----------------NSVHDLQAHSKE--IYTIKW-SPTGP 414 (524)
T ss_pred eeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC----------------cchhhhhhhccc--eeeEee-cCCCC
Confidence 2367999999999999999999975 999999998776 677788888865 888988 7764
Q ss_pred --------CEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChh
Q 021484 161 --------EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAE 232 (312)
Q Consensus 161 --------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~ 232 (312)
-.+++++.|++|++||+..+.++..|..|..+|++++|+|+|+++|+|+.||.|.+|+.+++++..-.....
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG 494 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence 478999999999999999999999999999999999999999999999999999999999998743333344
Q ss_pred hhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 233 KIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 233 ~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
.+ -...|..++..+...-.|+.+.+.|++
T Consensus 495 ~I-fel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 495 GI-FELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eE-EEEEEcCCCCEEEEEecCCCceEEEec
Confidence 44 445577788999999999999999875
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=8.3e-30 Score=215.00 Aligned_cols=207 Identities=15% Similarity=0.173 Sum_probs=181.9
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 107 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 107 (312)
||...|.+++++..+..+|++++.|+++++|++...+. ...++ .+........|...|.+++.+|+.+++|+++
T Consensus 409 gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~-----~~~~~-~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S 482 (775)
T KOG0319|consen 409 GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE-----TAFPI-VLTCRYTERAHDKDINCVAIAPNDKLIATGS 482 (775)
T ss_pred ccccccceeeecccCccEEEEecCCceEEEecCCCccc-----ccccc-eehhhHHHHhhcccccceEecCCCceEEecc
Confidence 69999999999998889999999999999999987331 11111 1222233367999999999999999999985
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
|++.+||+++.. ....++.||+.. |.+|.| ++..+.+++++.|++|+||.+.+..+++++
T Consensus 483 qDktaKiW~le~~----------------~l~~vLsGH~RG--vw~V~F-s~~dq~laT~SgD~TvKIW~is~fSClkT~ 543 (775)
T KOG0319|consen 483 QDKTAKIWDLEQL----------------RLLGVLSGHTRG--VWCVSF-SKNDQLLATCSGDKTVKIWSISTFSCLKTF 543 (775)
T ss_pred cccceeeecccCc----------------eEEEEeeCCccc--eEEEEe-ccccceeEeccCCceEEEEEeccceeeeee
Confidence 999999999977 788999999977 999999 999999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.+|+..|..+.|-.++..|++++.||.|++|++.+.+ ..++.+|.+.+..+. .++....+++++.|+.+.+|.
T Consensus 544 eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~-~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 544 EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALS-VSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEe-ecCccceeEecCCCeEEEEee
Confidence 9999999999999999999999999999999999886 588889999997776 455566899999999999995
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.7e-28 Score=182.70 Aligned_cols=198 Identities=15% Similarity=0.227 Sum_probs=165.8
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
+|+..|.+++|+|.| ++|++++.|.++.||.-..++. .....+.+|...|.+++|+++|.+||++
T Consensus 59 ~hkrsVRsvAwsp~g-~~La~aSFD~t~~Iw~k~~~ef-------------ecv~~lEGHEnEVK~Vaws~sG~~LATCS 124 (312)
T KOG0645|consen 59 GHKRSVRSVAWSPHG-RYLASASFDATVVIWKKEDGEF-------------ECVATLEGHENEVKCVAWSASGNYLATCS 124 (312)
T ss_pred cchheeeeeeecCCC-cEEEEeeccceEEEeecCCCce-------------eEEeeeeccccceeEEEEcCCCCEEEEee
Confidence 589999999999999 8999999999999999776542 2334448999999999999999999997
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc---CCeeE
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---GGKLV 183 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~---~~~~~ 183 (312)
.|+.|.||.+... ....+...++.|... |..+.| +|...+|++++.|.+|++|.-. .-+++
T Consensus 125 RDKSVWiWe~ded-------------dEfec~aVL~~HtqD--VK~V~W-HPt~dlL~S~SYDnTIk~~~~~~dddW~c~ 188 (312)
T KOG0645|consen 125 RDKSVWIWEIDED-------------DEFECIAVLQEHTQD--VKHVIW-HPTEDLLFSCSYDNTIKVYRDEDDDDWECV 188 (312)
T ss_pred CCCeEEEEEecCC-------------CcEEEEeeecccccc--ccEEEE-cCCcceeEEeccCCeEEEEeecCCCCeeEE
Confidence 5999999998743 122677888999987 999999 8999999999999999999865 34788
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCC-ChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 184 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD-NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 184 ~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
.++.+|...|.+++|+|.|..|++++.|++++||..... ++. |...++... |. ...+++++.|+.++++.-.
T Consensus 189 ~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~-W~--~~~IaS~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 189 QTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVP-WD--NGVIASGGGDDAIRLFKES 261 (312)
T ss_pred EEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeee-ec--ccceEeccCCCEEEEEEec
Confidence 999999999999999999999999999999999986632 222 334444344 44 5689999999999999744
No 29
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.1e-28 Score=209.67 Aligned_cols=212 Identities=10% Similarity=0.121 Sum_probs=164.2
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s 105 (312)
.||.++|++++|+|.++++|++|+.|++|++||+.+...... .. .+...+.+|...|.+++|+|++ .+|++
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--~~------~~l~~L~gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN--IS------DPIVHLQGHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--cC------cceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence 479999999999994337999999999999999986532110 00 1122237899999999999986 58888
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
+ .|+.|++||+.++ +....+.+|... |.+++| +|++.+|++++.|+.|++||+++++.+.
T Consensus 144 gs~DgtVrIWDl~tg----------------~~~~~l~~h~~~--V~sla~-spdG~lLatgs~Dg~IrIwD~rsg~~v~ 204 (493)
T PTZ00421 144 AGADMVVNVWDVERG----------------KAVEVIKCHSDQ--ITSLEW-NLDGSLLCTTSKDKKLNIIDPRDGTIVS 204 (493)
T ss_pred EeCCCEEEEEECCCC----------------eEEEEEcCCCCc--eEEEEE-ECCCCEEEEecCCCEEEEEECCCCcEEE
Confidence 6 5999999999887 677778888866 999999 8999999999999999999999999999
Q ss_pred EeecCccc-eEEEEEcCCCCeEEEEe----CCCcEEEccCCCCC-CC-CCCCChhhhhhhhccCCCCceeEEec-CCceE
Q 021484 185 LMVGDRHV-VNQLEPHPHIPMFATCG----IEKTVKLWAPMPTD-FP-PLPDNAEKIMKANKQGREDHSRITLT-PDVIM 256 (312)
Q Consensus 185 ~~~~~~~~-v~~~~~~p~~~~l~t~~----~d~~i~iwd~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~s~~-~d~~i 256 (312)
.+.+|.+. +..+.|.+++..+++++ .|+.|++||++... .. ....+.........+.+++.++++++ .|+.|
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~I 284 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNI 284 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeE
Confidence 99888764 45678999988877665 47999999998653 21 11112222223334567777888777 59999
Q ss_pred EEEEecccC
Q 021484 257 HVLRLQRRQ 265 (312)
Q Consensus 257 ~i~~~~~~~ 265 (312)
++|++....
T Consensus 285 riwdl~~~~ 293 (493)
T PTZ00421 285 RCFELMNER 293 (493)
T ss_pred EEEEeeCCc
Confidence 999998764
No 30
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=5.3e-30 Score=206.59 Aligned_cols=241 Identities=12% Similarity=0.198 Sum_probs=195.8
Q ss_pred CcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021484 24 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 103 (312)
Q Consensus 24 ~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 103 (312)
..|+||+..|+++.|.|....+|++++.|+.|+||++.... . |+..+ .+|..+|..++|+.+|..+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--------~-----~lrtf-~gH~k~Vrd~~~s~~g~~f 273 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--------R-----CLRTF-KGHRKPVRDASFNNCGTSF 273 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc--------c-----eehhh-hcchhhhhhhhccccCCee
Confidence 34579999999999999433899999999999999998732 1 33333 8999999999999999977
Q ss_pred EEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCe
Q 021484 104 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGK 181 (312)
Q Consensus 104 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~ 181 (312)
.+++ |+.|++||++++ ++...|.... .+.++.| .|++ +.+++|+.|+.|+-||+++++
T Consensus 274 LS~sfD~~lKlwDtETG----------------~~~~~f~~~~---~~~cvkf-~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 274 LSASFDRFLKLWDTETG----------------QVLSRFHLDK---VPTCVKF-HPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred eeeecceeeeeeccccc----------------eEEEEEecCC---Cceeeec-CCCCCcEEEEecCCCcEEEEeccchH
Confidence 7765 999999999998 6777776433 3899999 7877 889999999999999999999
Q ss_pred eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCC-CChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484 182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 182 ~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.++.+..|-+.|..+.|-|+|+.+++.+.|++++||+.+......+. ......+.+...++.+.++++-+.|+.+.++.
T Consensus 334 vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 334 VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence 99999999999999999999999999999999999998877543222 22222334445677888999999999999887
Q ss_pred eccc------------Ccc---ceeEeecCCCccCCCCCCCeEEEeecCCCCC
Q 021484 261 LQRR------------QTL---AYRERRYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 261 ~~~~------------~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
+... ... ....++|++..+.+++.+|.+++||+..--.
T Consensus 414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl 466 (503)
T KOG0282|consen 414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL 466 (503)
T ss_pred cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh
Confidence 5332 111 2237899999999999999999999865433
No 31
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.6e-29 Score=213.99 Aligned_cols=220 Identities=17% Similarity=0.296 Sum_probs=185.7
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++||.|=+... .++.+|.++|..++|||+. -+|++|+.|.+|++|+..+.+ |.
T Consensus 33 IQlWDYRM~tli-----------~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~rr--------------cl 86 (1202)
T KOG0292|consen 33 IQLWDYRMGTLI-----------DRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKTRR--------------CL 86 (1202)
T ss_pred eeeehhhhhhHH-----------hhhhccCCccceeeecCCC-CeEEecCCccEEEEEecccce--------------eh
Confidence 567777644321 1234599999999999998 599999999999999999988 55
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+ .+|-+-|..+.|++.-..++++ .|.+|+||+-.+. +++..++||..- |.|..| +|.
T Consensus 87 ftL-~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr----------------~~iavltGHnHY--VMcAqF-hpt 146 (1202)
T KOG0292|consen 87 FTL-LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR----------------KCIAVLTGHNHY--VMCAQF-HPT 146 (1202)
T ss_pred hhh-ccccceeEEeeccCCCceEEEccCCCeEEEEeccCC----------------ceEEEEecCceE--EEeecc-CCc
Confidence 555 8999999999999998888887 5999999999988 899999999966 999999 899
Q ss_pred CCEEEEeccCceEEEEeccC--------C---------------------eeEEEeecCccceEEEEEcCCCCeEEEEeC
Q 021484 160 DEYVMSGSDCGHLFIWKKKG--------G---------------------KLVRLMVGDRHVVNQLEPHPHIPMFATCGI 210 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~--------~---------------------~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~ 210 (312)
...+++++.|.+|+|||+.. + -....+.+|...|+-++|+|.-+.+++|+.
T Consensus 147 EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D 226 (1202)
T KOG0292|consen 147 EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD 226 (1202)
T ss_pred cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence 99999999999999999641 1 012356789999999999999999999999
Q ss_pred CCcEEEccCCCCC---CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021484 211 EKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 211 d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
|+.|++|.....+ ..+..+|.+.+ ....+++...++++.+.|+.+++||+..+...
T Consensus 227 DRqVKlWrmnetKaWEvDtcrgH~nnV-ssvlfhp~q~lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 227 DRQVKLWRMNETKAWEVDTCRGHYNNV-SSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred cceeeEEEeccccceeehhhhcccCCc-ceEEecCccceeEecCCCccEEEEecccccce
Confidence 9999999987654 46677888888 44557888899999999999999998776443
No 32
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.2e-27 Score=207.29 Aligned_cols=211 Identities=11% Similarity=0.080 Sum_probs=156.8
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
.+|..+|.+++|+|+.+++|++|+.|++|++||+.++..... .+. .+...+.+|...|.+++|+|++. +|++
T Consensus 71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-----~i~--~p~~~L~gH~~~V~sVaf~P~g~~iLaS 143 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-----EIK--DPQCILKGHKKKISIIDWNPMNYYIMCS 143 (568)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----ccc--cceEEeecCCCcEEEEEECCCCCeEEEE
Confidence 479999999999997548999999999999999986431000 000 11122378999999999999987 4566
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
+ .|+.|++||++++ +....+. +... |.+++| +++|.+|++++.|+.|++||+++++.+.
T Consensus 144 gS~DgtIrIWDl~tg----------------~~~~~i~-~~~~--V~Slsw-spdG~lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 144 SGFDSFVNIWDIENE----------------KRAFQIN-MPKK--LSSLKW-NIKGNLLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred EeCCCeEEEEECCCC----------------cEEEEEe-cCCc--EEEEEE-CCCCCEEEEEecCCEEEEEECCCCcEEE
Confidence 5 5999999999886 4444444 3433 999999 9999999999999999999999999999
Q ss_pred EeecCccceEE-----EEEcCCCCeEEEEeCCC----cEEEccCCCC-CCCCCCCC--hhhhhhhhccCCCCceeEEecC
Q 021484 185 LMVGDRHVVNQ-----LEPHPHIPMFATCGIEK----TVKLWAPMPT-DFPPLPDN--AEKIMKANKQGREDHSRITLTP 252 (312)
Q Consensus 185 ~~~~~~~~v~~-----~~~~p~~~~l~t~~~d~----~i~iwd~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~l~s~~~ 252 (312)
.+.+|.+.+.. ..|++++.++++++.|+ +|+|||++.. .......+ ....+...+...++.++++|..
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 99999876533 23468989999988774 7999999853 32211111 1122222223446778999999
Q ss_pred CceEEEEEeccc
Q 021484 253 DVIMHVLRLQRR 264 (312)
Q Consensus 253 d~~i~i~~~~~~ 264 (312)
|+.+++|++...
T Consensus 284 D~tIr~~e~~~~ 295 (568)
T PTZ00420 284 DGNCRYYQHSLG 295 (568)
T ss_pred CCeEEEEEccCC
Confidence 999999998654
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.7e-29 Score=193.71 Aligned_cols=236 Identities=13% Similarity=0.200 Sum_probs=197.9
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||+.+|+.+-|+|.. .+.++++.|++|++||..+++ +...+ .+|...+..|+|+..|++|+++
T Consensus 105 ~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~--------------~e~~L-rGHt~sv~di~~~a~Gk~l~tc 168 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGE--------------LERSL-RGHTDSVFDISFDASGKYLATC 168 (406)
T ss_pred hccccceeeeeeccCc-eEEEEecCCceEEEEEccchh--------------hhhhh-hccccceeEEEEecCccEEEec
Confidence 4799999999999988 688999999999999999998 33333 8999999999999999999997
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
+ |-.+++||..+.. ++++.+.+|... |.+++| -|.|.++++++.|.+|+.|++.++.++.+
T Consensus 169 SsDl~~~LWd~~~~~---------------~c~ks~~gh~h~--vS~V~f-~P~gd~ilS~srD~tik~We~~tg~cv~t 230 (406)
T KOG0295|consen 169 SSDLSAKLWDFDTFF---------------RCIKSLIGHEHG--VSSVFF-LPLGDHILSCSRDNTIKAWECDTGYCVKT 230 (406)
T ss_pred CCccchhheeHHHHH---------------HHHHHhcCcccc--eeeEEE-EecCCeeeecccccceeEEecccceeEEe
Confidence 5 7779999997631 678888899877 999999 68899999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCC---------------CCceeEE
Q 021484 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR---------------EDHSRIT 249 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~l~s 249 (312)
+.+|...|..+..+.+|.++|+++.|.+|++|-+.+... ..+.+|...+ .+..|.+ .+.++.+
T Consensus 231 ~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~v-Eci~wap~~~~~~i~~at~~~~~~~~l~s 309 (406)
T KOG0295|consen 231 FPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPV-ECIAWAPESSYPSISEATGSTNGGQVLGS 309 (406)
T ss_pred ccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccce-EEEEecccccCcchhhccCCCCCccEEEe
Confidence 999999999999999999999999999999999988742 3444444333 2222211 1358999
Q ss_pred ecCCceEEEEEecccCcc---------cee-EeecCCCccCCCCCCCeEEEeecCCCC
Q 021484 250 LTPDVIMHVLRLQRRQTL---------AYR-ERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 250 ~~~d~~i~i~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
++.|++|++||+..+..+ +.. .+.|.+.++.+..|+..+-+||+....
T Consensus 310 ~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred ecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 999999999999876322 111 678889999999999999999987754
No 34
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=9.4e-28 Score=188.31 Aligned_cols=251 Identities=11% Similarity=0.172 Sum_probs=192.4
Q ss_pred CCccceEEEEEcCCCC--cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 28 MNSIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
||.++|.+++|.-.++ ..|++++.|.++++|.++.++.... +... ..+|...|.++...++|..+++
T Consensus 142 Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~----------~~~~-~~GHk~~V~sVsv~~sgtr~~S 210 (423)
T KOG0313|consen 142 GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVK----------ALKV-CRGHKRSVDSVSVDSSGTRFCS 210 (423)
T ss_pred cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhh----------HHhH-hcccccceeEEEecCCCCeEEe
Confidence 5899999888865332 3699999999999999987763211 1111 1499999999999999999999
Q ss_pred ec-CCcEEEEEcCCCcCCCCC---------cCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEE
Q 021484 106 YN-DELVYLFEKNMGLGPSPL---------SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW 175 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iw 175 (312)
++ |..|.+|+..+......- ...........++..+.||..+ |.++.| ++ ...+++++.|.+|+.|
T Consensus 211 gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~--Vs~V~w-~d-~~v~yS~SwDHTIk~W 286 (423)
T KOG0313|consen 211 GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP--VSSVVW-SD-ATVIYSVSWDHTIKVW 286 (423)
T ss_pred ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc--eeeEEE-cC-CCceEeecccceEEEE
Confidence 86 999999994332211000 0011112334567788999977 999999 55 7789999999999999
Q ss_pred eccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC----CCCCCCChhhhhhhhccCC-CCceeEEe
Q 021484 176 KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGR-EDHSRITL 250 (312)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~l~s~ 250 (312)
|+.++..+..+.+ ...++++..+|..++|++|+.|..|++||++++. ..++.+|.+.+-.+. |++ +...++++
T Consensus 287 Dletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvk-wsp~~~~~~~S~ 364 (423)
T KOG0313|consen 287 DLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVK-WSPTNEFQLVSG 364 (423)
T ss_pred Eeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhee-cCCCCceEEEEE
Confidence 9999999888874 4578999999999999999999999999999874 356778999775554 555 67889999
Q ss_pred cCCceEEEEEecccCccceeEeecCCCccCCCCCCCeEEEeecCCCCCCCCCCCc
Q 021484 251 TPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYLLGFSDSDASSEGGGN 305 (312)
Q Consensus 251 ~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 305 (312)
+.|+++++||++....+ ..++..|+|. |+.+|..++.--..+|+|
T Consensus 365 S~D~t~klWDvRS~k~p--------lydI~~h~DK--vl~vdW~~~~~IvSGGaD 409 (423)
T KOG0313|consen 365 SYDNTVKLWDVRSTKAP--------LYDIAGHNDK--VLSVDWNEGGLIVSGGAD 409 (423)
T ss_pred ecCCeEEEEEeccCCCc--------ceeeccCCce--EEEEeccCCceEEeccCc
Confidence 99999999999988655 3467777777 999998887544444433
No 35
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.5e-28 Score=178.91 Aligned_cols=232 Identities=16% Similarity=0.250 Sum_probs=183.8
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.|.++|.++.|+-+| ++.++++.|.+|++|+...+.+ .+.. .+|...|..++.+.+...++++
T Consensus 15 ~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~rg~l--------------iktY-sghG~EVlD~~~s~Dnskf~s~G 78 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLRGAL--------------IKTY-SGHGHEVLDAALSSDNSKFASCG 78 (307)
T ss_pred ccccceEEEEEccCC-CEEEEcCCCceEEeecccccce--------------eeee-cCCCceeeeccccccccccccCC
Confidence 378899999999999 8999999999999999998873 3333 8899999999999999888886
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC--CeeEE
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG--GKLVR 184 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~--~~~~~ 184 (312)
.|..+.+||+.++ +..+.+.+|... |..+.| +.+...+++|+.|..+++||.++ .++++
T Consensus 79 gDk~v~vwDV~TG----------------kv~Rr~rgH~aq--VNtV~f-NeesSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 79 GDKAVQVWDVNTG----------------KVDRRFRGHLAQ--VNTVRF-NEESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred CCceEEEEEcccC----------------eeeeecccccce--eeEEEe-cCcceEEEeccccceeEEEEcccCCCCccc
Confidence 6999999999999 899999999977 999999 89999999999999999999764 56778
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.+......|.++.. .+..+++|+.||++|.||++.+.+.. ......+.+..++++++..++++-|+++++.|-.++
T Consensus 140 ildea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSS--DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred hhhhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeeh--hhcCCcceeEEecCCCCEEEEeeccceeeecccchh
Confidence 77766777877776 55678888888888888888776522 122333456667788888888888888888885443
Q ss_pred Ccc---------cee---EeecCCCccCCCCCCCeEEEeecCCCCC
Q 021484 265 QTL---------AYR---ERRYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 265 ~~~---------~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
..+ .|. ........+.++.++|.||+||+.++..
T Consensus 216 klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 216 KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred HHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee
Confidence 221 221 2233345566778888888888877643
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=3e-28 Score=189.91 Aligned_cols=218 Identities=18% Similarity=0.289 Sum_probs=183.9
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|+|||+.+++....+ +||...|..+++++.. -++.+++.|+.|+.||+...+. .
T Consensus 175 ikIwDlatg~Lkltl-----------tGhi~~vr~vavS~rH-pYlFs~gedk~VKCwDLe~nkv--------------I 228 (460)
T KOG0285|consen 175 IKIWDLATGQLKLTL-----------TGHIETVRGVAVSKRH-PYLFSAGEDKQVKCWDLEYNKV--------------I 228 (460)
T ss_pred eEEEEcccCeEEEee-----------cchhheeeeeeecccC-ceEEEecCCCeeEEEechhhhh--------------H
Confidence 589999987643333 2478889999999998 5999999999999999998773 2
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
+.+ .+|-..|.+++.+|.-..|+++ .|..+++||+++. ..+..+.||... |.++.+ .|.
T Consensus 229 R~Y-hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr----------------~~V~~l~GH~~~--V~~V~~-~~~ 288 (460)
T KOG0285|consen 229 RHY-HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR----------------ASVHVLSGHTNP--VASVMC-QPT 288 (460)
T ss_pred HHh-ccccceeEEEeccccceeEEecCCcceEEEeeeccc----------------ceEEEecCCCCc--ceeEEe-ecC
Confidence 333 7899999999999999999996 6999999999998 788999999977 999998 888
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN 238 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~ 238 (312)
...+++|+.|++|++||++.|+....+..|...|.+++.+|....||+++.| .|+-|++..+.. ..+.+|...+..+.
T Consensus 289 dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~ 367 (460)
T KOG0285|consen 289 DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLS 367 (460)
T ss_pred CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeee
Confidence 8889999999999999999999999999999999999999999999999876 799999887764 55665555443322
Q ss_pred ccCCCCceeEEecCCceEEEEEecccCcc
Q 021484 239 KQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
..++..+++|+.++.+..||.+.+.+-
T Consensus 368 --~nsD~v~~~G~dng~~~fwdwksg~ny 394 (460)
T KOG0285|consen 368 --VNSDGVLVSGGDNGSIMFWDWKSGHNY 394 (460)
T ss_pred --eccCceEEEcCCceEEEEEecCcCccc
Confidence 235678999999999999998766443
No 37
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=2.3e-28 Score=187.38 Aligned_cols=221 Identities=14% Similarity=0.237 Sum_probs=172.6
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCC----eecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC----HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 103 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 103 (312)
.|+.++.+.+|+|+| .++|+|+.|.+|+|.|++.- +....+..+..-+- .+-..+..|.+.|..+.|+|...+|
T Consensus 110 ~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~h-PvIRTlYDH~devn~l~FHPre~IL 187 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARH-PVIRTLYDHVDEVNDLDFHPRETIL 187 (430)
T ss_pred ecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCC-ceEeehhhccCcccceeecchhheE
Confidence 589999999999999 89999999999999998721 11111111111110 1111227899999999999999999
Q ss_pred EEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021484 104 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 104 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
+++ .|++|++||.... ...+.++......+|.+++| +|.|.+|+.|.+...+++||+.+-++
T Consensus 188 iS~srD~tvKlFDfsK~----------------saKrA~K~~qd~~~vrsiSf-HPsGefllvgTdHp~~rlYdv~T~Qc 250 (430)
T KOG0640|consen 188 ISGSRDNTVKLFDFSKT----------------SAKRAFKVFQDTEPVRSISF-HPSGEFLLVGTDHPTLRLYDVNTYQC 250 (430)
T ss_pred EeccCCCeEEEEecccH----------------HHHHHHHHhhccceeeeEee-cCCCceEEEecCCCceeEEeccceeE
Confidence 997 4999999999764 23333333333345999999 89999999999999999999999888
Q ss_pred EEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCC-CChhhhhhhhccCCCCceeEEecCCceEE
Q 021484 183 VRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP-DNAEKIMKANKQGREDHSRITLTPDVIMH 257 (312)
Q Consensus 183 ~~~~---~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 257 (312)
...- ..|++.|+++.+++.+++.+|++.||.|++||--+.+ +.++. .|.+..+..+.+..++.++++.+.|+.++
T Consensus 251 fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vk 330 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVK 330 (430)
T ss_pred eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceee
Confidence 6544 3688999999999999999999999999999965544 44443 46666677777888999999999999999
Q ss_pred EEEecccCcc
Q 021484 258 VLRLQRRQTL 267 (312)
Q Consensus 258 i~~~~~~~~~ 267 (312)
+|.+.++..+
T Consensus 331 LWEi~t~R~l 340 (430)
T KOG0640|consen 331 LWEISTGRML 340 (430)
T ss_pred eeeecCCceE
Confidence 9999876544
No 38
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=189.86 Aligned_cols=243 Identities=14% Similarity=0.184 Sum_probs=190.3
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 107 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 107 (312)
|.+..+.|..|+|++ ++|++|+.||.|.+||..++++..... +.....+..+..+|.++.|+.+.++||+++
T Consensus 211 g~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrKDLk-------YQAqd~fMMmd~aVlci~FSRDsEMlAsGs 282 (508)
T KOG0275|consen 211 GQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRKDLK-------YQAQDNFMMMDDAVLCISFSRDSEMLASGS 282 (508)
T ss_pred ccccchhheeeCCCC-ceEeeccccceeeeehhccchhhhhhh-------hhhhcceeecccceEEEeecccHHHhhccC
Confidence 456778999999999 899999999999999999998543211 111112245788999999999999999985
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
||.|++|.++++ .+++.|. .|... |+++.| +.++..+++++.|.++++.-+++|++++.
T Consensus 283 qDGkIKvWri~tG----------------~ClRrFdrAHtkG--vt~l~F-SrD~SqiLS~sfD~tvRiHGlKSGK~LKE 343 (508)
T KOG0275|consen 283 QDGKIKVWRIETG----------------QCLRRFDRAHTKG--VTCLSF-SRDNSQILSASFDQTVRIHGLKSGKCLKE 343 (508)
T ss_pred cCCcEEEEEEecc----------------hHHHHhhhhhccC--eeEEEE-ccCcchhhcccccceEEEeccccchhHHH
Confidence 999999999999 7888887 78766 999999 99999999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCC--ChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
+++|..-|+.+.|.++|..+++++.||+|++|+..+.+ +.++.. ..-++......+.+...++.+...+++.+.+++
T Consensus 344 frGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 344 FRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred hcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 99999999999999999999999999999999998776 344432 222333333344466677788888888888765
Q ss_pred ccC----------cccee--EeecCCCccCCCCCCCeEEEeecCCCC
Q 021484 263 RRQ----------TLAYR--ERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 263 ~~~----------~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
..- ...++ ..+|.+.-+..-.+++.+|.+....|.
T Consensus 424 GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 424 GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc
Confidence 321 11122 445555555555667777877766654
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=8.8e-27 Score=215.17 Aligned_cols=198 Identities=15% Similarity=0.173 Sum_probs=161.0
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEe-c
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-N 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~ 107 (312)
...|.+++|+|....+|++++.||+|++||+.+++. ...+ .+|...|++++|+| ++.+|+++ .
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~--------------~~~~-~~H~~~V~~l~~~p~~~~~L~Sgs~ 596 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL--------------VTEM-KEHEKRVWSIDYSSADPTLLASGSD 596 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE--------------EEEe-cCCCCCEEEEEEcCCCCCEEEEEcC
Confidence 457999999986558999999999999999988762 2222 78999999999997 67888887 5
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-eEEEe
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLM 186 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~ 186 (312)
|+.|++||+.++ .....+..+ .. +.++.|.++++.+|++|+.||.|++||+++.+ ++..+
T Consensus 597 Dg~v~iWd~~~~----------------~~~~~~~~~-~~--v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~ 657 (793)
T PLN00181 597 DGSVKLWSINQG----------------VSIGTIKTK-AN--ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM 657 (793)
T ss_pred CCEEEEEECCCC----------------cEEEEEecC-CC--eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe
Confidence 999999999876 566666544 33 88999856679999999999999999998765 56778
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC-------CCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEE
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-------DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL 259 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~ 259 (312)
.+|...|.++.|. ++.++++++.|++|++||+... .+..+.+|...+ ....+++++.++++++.|+.+++|
T Consensus 658 ~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i-~~v~~s~~~~~lasgs~D~~v~iw 735 (793)
T PLN00181 658 IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVK-NFVGLSVSDGYIATGSETNEVFVY 735 (793)
T ss_pred cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCe-eEEEEcCCCCEEEEEeCCCEEEEE
Confidence 8999999999997 6788999999999999998743 234555565544 344567788899999999999999
Q ss_pred Eecc
Q 021484 260 RLQR 263 (312)
Q Consensus 260 ~~~~ 263 (312)
+...
T Consensus 736 ~~~~ 739 (793)
T PLN00181 736 HKAF 739 (793)
T ss_pred ECCC
Confidence 9653
No 40
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=6.9e-29 Score=200.18 Aligned_cols=214 Identities=13% Similarity=0.184 Sum_probs=170.4
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|+||++.... .+++. |.||+.+|.+++|++++ ..|++++.|+.|++||+++|++...
T Consensus 239 vklW~vy~~~--~~lrt--------f~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtETG~~~~~------------ 295 (503)
T KOG0282|consen 239 VKLWNVYDDR--RCLRT--------FKGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTETGQVLSR------------ 295 (503)
T ss_pred EEEEEEecCc--ceehh--------hhcchhhhhhhhccccC-CeeeeeecceeeeeeccccceEEEE------------
Confidence 5788887632 22221 24699999999999999 8999999999999999999985322
Q ss_pred cccccCCCccEEEEEEccCC-CeEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484 81 RHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 158 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~ 158 (312)
+ .....++++.|+|++ +.+++ ++|+.|+.||++++ +.++.+..|... |..+.| -+
T Consensus 296 --f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~----------------kvvqeYd~hLg~--i~~i~F-~~ 352 (503)
T KOG0282|consen 296 --F--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG----------------KVVQEYDRHLGA--ILDITF-VD 352 (503)
T ss_pred --E--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccch----------------HHHHHHHhhhhh--eeeeEE-cc
Confidence 1 124567899999999 55555 47999999999998 788888888866 999999 79
Q ss_pred CCCEEEEeccCceEEEEeccCCeeEE----------------------------------------------EeecCc--
Q 021484 159 NDEYVMSGSDCGHLFIWKKKGGKLVR----------------------------------------------LMVGDR-- 190 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~~~~~----------------------------------------------~~~~~~-- 190 (312)
++.++++.++|+.++||+.+.+.++. .+++|.
T Consensus 353 ~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~va 432 (503)
T KOG0282|consen 353 EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVA 432 (503)
T ss_pred CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceecc
Confidence 99999999999999999976543221 333454
Q ss_pred cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484 191 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 191 ~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
+.-..+.|||+|.+|++|+.||.+.+||.++.++ ..+..|...++...|-..+...+++++-+|.|++|+
T Consensus 433 Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 433 GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 2345689999999999999999999999998875 667777666666664444888999999999999995
No 41
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=174.83 Aligned_cols=202 Identities=14% Similarity=0.169 Sum_probs=173.0
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
+||...|..++.+.++ ..|++++.|..+.+||+.++++. ..+ .+|...|..++|+.+...++++
T Consensus 56 sghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~TGkv~--------------Rr~-rgH~aqVNtV~fNeesSVv~Sg 119 (307)
T KOG0316|consen 56 SGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNTGKVD--------------RRF-RGHLAQVNTVRFNEESSVVASG 119 (307)
T ss_pred cCCCceeeeccccccc-cccccCCCCceEEEEEcccCeee--------------eec-ccccceeeEEEecCcceEEEec
Confidence 5689999999999998 79999999999999999999832 222 8999999999999999999998
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
+ |..+++||.++. ..++++.+...... |.++.. .+..+++|+.||+++.||++.|+....
T Consensus 120 sfD~s~r~wDCRS~--------------s~ePiQildea~D~--V~Si~v---~~heIvaGS~DGtvRtydiR~G~l~sD 180 (307)
T KOG0316|consen 120 SFDSSVRLWDCRSR--------------SFEPIQILDEAKDG--VSSIDV---AEHEIVAGSVDGTVRTYDIRKGTLSSD 180 (307)
T ss_pred cccceeEEEEcccC--------------CCCccchhhhhcCc--eeEEEe---cccEEEeeccCCcEEEEEeecceeehh
Confidence 6 999999999875 22677888777766 999876 578899999999999999999988776
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCC-CCceeEEecCCceEEEEEecc
Q 021484 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~ 263 (312)
..+| +|++++|+++++..+.++.|++|++.|-.++++ ..+.+|.+..++..+.-. ....+++++.||.+.+||+-.
T Consensus 181 y~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd 258 (307)
T KOG0316|consen 181 YFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD 258 (307)
T ss_pred hcCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecc
Confidence 6644 799999999999999999999999999999985 778888887766654333 467889999999999999876
Q ss_pred cC
Q 021484 264 RQ 265 (312)
Q Consensus 264 ~~ 265 (312)
..
T Consensus 259 ~~ 260 (307)
T KOG0316|consen 259 ET 260 (307)
T ss_pred ce
Confidence 53
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=2.1e-26 Score=187.99 Aligned_cols=217 Identities=21% Similarity=0.343 Sum_probs=175.3
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++||+.+.+....+. +|...+..+.|+|++ +.+++++.||.|++|++.+++ ..
T Consensus 33 i~i~~~~~~~~~~~~~-----------~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~~~--------------~~ 86 (289)
T cd00200 33 IKVWDLETGELLRTLK-----------GHTGPVRDVAASADG-TYLASGSSDKTIRLWDLETGE--------------CV 86 (289)
T ss_pred EEEEEeeCCCcEEEEe-----------cCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCccc--------------ce
Confidence 4677777654222222 267789999999998 799999999999999998764 12
Q ss_pred cccccCCCccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+ ..|...+.++.|++++++++++. ++.+++||+.++ +....+..|... +.+++| +|+
T Consensus 87 ~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~ 146 (289)
T cd00200 87 RTL-TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG----------------KCLTTLRGHTDW--VNSVAF-SPD 146 (289)
T ss_pred EEE-eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc----------------EEEEEeccCCCc--EEEEEE-cCc
Confidence 222 56777899999999988888886 999999999866 566677777755 999999 898
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN 238 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~ 238 (312)
+.++++++.++.|++||+++++.+..+..|...+.++.|+|+++.+++++.|+.|++||++.... ..+..+...+.. .
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~-~ 225 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS-V 225 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEE-E
Confidence 99999988899999999999999989988988999999999999999999999999999987654 444345554433 4
Q ss_pred ccCCCCceeEEecCCceEEEEEeccc
Q 021484 239 KQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.+.+++.++++++.++.+++|++...
T Consensus 226 ~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 226 AFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred EEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 46667778888888999999998754
No 43
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-27 Score=178.03 Aligned_cols=202 Identities=14% Similarity=0.216 Sum_probs=165.4
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec-
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN- 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~- 107 (312)
.+.+..++|++...+.+++++.||++++||+.... .|+..+ +.|...|.++.|++-.+ .+++++
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--------~Pi~~~------kEH~~EV~Svdwn~~~r~~~ltsSW 125 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--------KPIHKF------KEHKREVYSVDWNTVRRRIFLTSSW 125 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCC--------cchhHH------HhhhhheEEeccccccceeEEeecc
Confidence 56899999999888999999999999999965433 344443 88999999999999664 555555
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 187 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 187 (312)
|++|++|+...+ +.++++.+|... |....|++..++.+++++.|+.+++||++..-....+.
T Consensus 126 D~TiKLW~~~r~----------------~Sv~Tf~gh~~~--Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ 187 (311)
T KOG0277|consen 126 DGTIKLWDPNRP----------------NSVQTFNGHNSC--IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE 187 (311)
T ss_pred CCceEeecCCCC----------------cceEeecCCccE--EEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE
Confidence 999999999877 788899999976 99999944468899999999999999988643344488
Q ss_pred cCccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCC-CCceeEEecCCceEEEEEecc
Q 021484 188 GDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 188 ~~~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~ 263 (312)
.|...+.++.|+.-. ..++||+.|+.||.||++..+ +..+.+|.-++.+.. +++ ....|++++.|.++++||...
T Consensus 188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk-~Sph~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVK-FSPHHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEe-cCcchhhHhhhccccceEEeccccc
Confidence 999999999998754 569999999999999999876 456667777764444 555 677899999999999999764
Q ss_pred c
Q 021484 264 R 264 (312)
Q Consensus 264 ~ 264 (312)
.
T Consensus 267 ~ 267 (311)
T KOG0277|consen 267 Q 267 (311)
T ss_pred c
Confidence 4
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.2e-27 Score=198.75 Aligned_cols=180 Identities=17% Similarity=0.330 Sum_probs=155.4
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|+||++.+.+..+.|.. |++.|.+++.||+. -++++++.|-+|++||.+..= ..
T Consensus 79 IrVfnynt~ekV~~FeA-----------H~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~w--------------a~ 132 (794)
T KOG0276|consen 79 IRVFNYNTGEKVKTFEA-----------HSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEW--------------AC 132 (794)
T ss_pred EEEEecccceeeEEeec-----------cccceeeeeecCCC-CeEEecCCccEEEEeeccCce--------------ee
Confidence 56777776655444443 89999999999998 499999999999999998542 22
Q ss_pred cccccCCCccEEEEEEccCC-CeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec-
Q 021484 81 RHLIGKNNIHITGLAYSNTS-ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG- 157 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~-~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s- 157 (312)
...+.+|..-|.+++|+|.. ..+|+++ |++|++|.+.+. .+..++.+|... |.+++|++
T Consensus 133 ~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~----------------~~nfTl~gHekG--VN~Vdyy~~ 194 (794)
T KOG0276|consen 133 EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP----------------HPNFTLEGHEKG--VNCVDYYTG 194 (794)
T ss_pred eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC----------------CCceeeeccccC--cceEEeccC
Confidence 23338999999999999976 4888875 999999999987 788999999977 99999953
Q ss_pred CCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484 158 PNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 158 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
++..+|++|++|..++|||..+.+|++++.+|...|+.+.|+|.-+++++|++||++|||+..+.++
T Consensus 195 gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 195 GDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred CCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh
Confidence 2346999999999999999999999999999999999999999999999999999999999888765
No 45
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.9e-26 Score=212.88 Aligned_cols=236 Identities=12% Similarity=0.164 Sum_probs=181.6
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeEEEe
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~ 106 (312)
+|...|.+++|+|++ +++++|+.|++|++|++........ ....++. . ..+...+.+++|++. +.+|+++
T Consensus 481 ~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~-~~~~~~~------~-~~~~~~v~~l~~~~~~~~~las~ 551 (793)
T PLN00181 481 NSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGR-DIHYPVV------E-LASRSKLSGICWNSYIKSQVASS 551 (793)
T ss_pred CCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCccccccc-ccccceE------E-ecccCceeeEEeccCCCCEEEEE
Confidence 388999999999998 8999999999999999864210000 0000111 1 123457899999885 5688886
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEeccCCeeEE
Q 021484 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
.|+.|++||+.++ +.+..+.+|... |.+++| +| ++.+|++|+.||.|++||+++++.+.
T Consensus 552 ~~Dg~v~lWd~~~~----------------~~~~~~~~H~~~--V~~l~~-~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 552 NFEGVVQVWDVARS----------------QLVTEMKEHEKR--VWSIDY-SSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred eCCCeEEEEECCCC----------------eEEEEecCCCCC--EEEEEE-cCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 5999999999877 677888889866 999999 65 78999999999999999999999888
Q ss_pred EeecCccceEEEEEc-CCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484 185 LMVGDRHVVNQLEPH-PHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~-p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.+..+ ..|.++.|+ +++.+|++|+.|+.|++||++... ...+.+|...+.... +. ++..+++++.|+.+++||+
T Consensus 613 ~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~-f~-~~~~lvs~s~D~~ikiWd~ 689 (793)
T PLN00181 613 TIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR-FV-DSSTLVSSSTDNTLKLWDL 689 (793)
T ss_pred EEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEE-Ee-CCCEEEEEECCCEEEEEeC
Confidence 88755 678999995 578899999999999999998764 345566776664443 33 5678999999999999998
Q ss_pred cccC-----c-----------cceeEeecCCCccCCCCCCCeEEEeecC
Q 021484 262 QRRQ-----T-----------LAYRERRYNAADFESDEEEGETYLLGFS 294 (312)
Q Consensus 262 ~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 294 (312)
.... . .....+.+.+..++++..++.+++|+..
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 6321 0 0112466677888888888999999854
No 46
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=184.86 Aligned_cols=219 Identities=18% Similarity=0.302 Sum_probs=176.6
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
..|...|.+++.+|+. ++++||+.|....+|++.++.. ...+ .+|+..|+++.|+.+|.+||++
T Consensus 61 ~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~ge~--------------~~el-tgHKDSVt~~~FshdgtlLATG 124 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDISTGEF--------------AGEL-TGHKDSVTCCSFSHDGTLLATG 124 (399)
T ss_pred hhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccCCcc--------------eeEe-cCCCCceEEEEEccCceEEEec
Confidence 3599999999999977 8999999999999999999862 2222 8999999999999999999998
Q ss_pred c-CCcEEEEEcCCCc--------------------------CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 107 N-DELVYLFEKNMGL--------------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
. +|.|+||...++. +..+.++=.|.+......+.+.||..+ +++=.| .|+
T Consensus 125 dmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~--ct~G~f-~pd 201 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP--CTCGEF-IPD 201 (399)
T ss_pred CCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC--cccccc-cCC
Confidence 5 9999999998775 223334444445555678889999876 899998 899
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeec---------------------------------------------------
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVG--------------------------------------------------- 188 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--------------------------------------------------- 188 (312)
|+.++++..||+|++|++.+++++..+..
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~ 281 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPS 281 (399)
T ss_pred CceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCcccccc
Confidence 99999999999999999999988764430
Q ss_pred CccceEEE---EEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484 189 DRHVVNQL---EPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 189 ~~~~v~~~---~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
+...+.++ .|+..-+++|.|+.||+|.|||+....++....|...++.+.|.. ..+|++++.++.++.||.++++
T Consensus 282 ~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 282 QEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred chhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccc
Confidence 11111222 233334568889999999999999999888888998888877655 6799999999999999988774
Q ss_pred c
Q 021484 266 T 266 (312)
Q Consensus 266 ~ 266 (312)
.
T Consensus 360 l 360 (399)
T KOG0296|consen 360 L 360 (399)
T ss_pred e
Confidence 3
No 47
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=5.6e-26 Score=185.39 Aligned_cols=233 Identities=18% Similarity=0.286 Sum_probs=184.6
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
+|+.+|++++|+|++ ++|++++.||.+++|++.+++. .. ....|...+..+.|+|++++++++
T Consensus 7 ~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~~~~--------------~~-~~~~~~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 7 GHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGEL--------------LR-TLKGHTGPVRDVAASADGTYLASGS 70 (289)
T ss_pred ccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeCCCc--------------EE-EEecCCcceeEEEECCCCCEEEEEc
Confidence 589999999999998 7999999999999999987641 11 225678888999999999888776
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.++.|++|++.++ +....+..|... +.++.| +++++++++++.++.|.+||+.+++....+
T Consensus 71 ~~~~i~i~~~~~~----------------~~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 71 SDKTIRLWDLETG----------------ECVRTLTGHTSY--VSSVAF-SPDGRILSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred CCCeEEEEEcCcc----------------cceEEEeccCCc--EEEEEE-cCCCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence 5999999999876 567777777755 999999 888889999888999999999999999888
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
..|...+.+++|+|++.++++++.|+.|++||++..+. ..+..+...+ ....+.+++..+++++.++.+++|+++...
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~ 210 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV-NSVAFSPDGEKLLSSSSDGTIKLWDLSTGK 210 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcccc-ceEEECCCcCEEEEecCCCcEEEEECCCCc
Confidence 88999999999999988898888899999999986653 4444444444 444567777788888889999999986432
Q ss_pred ccc----------eeEeecCCCccCCCCCCCeEEEeecCCC
Q 021484 266 TLA----------YRERRYNAADFESDEEEGETYLLGFSDS 296 (312)
Q Consensus 266 ~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 296 (312)
... ...+.++...+.....++.+++++...+
T Consensus 211 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 211 CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence 211 1144444445555555777888887643
No 48
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=2.9e-26 Score=187.00 Aligned_cols=234 Identities=17% Similarity=0.218 Sum_probs=181.1
Q ss_pred ecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE
Q 021484 17 CSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY 96 (312)
Q Consensus 17 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 96 (312)
...++.......|..-|+|+.|+|+| .+|++++.||++.+||-.+++.+..+. . ..+|.+.|.+++|
T Consensus 177 GPPFKFk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge~vg~l~---------~---~~aHkGsIfalsW 243 (603)
T KOG0318|consen 177 GPPFKFKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGEKVGELE---------D---SDAHKGSIFALSW 243 (603)
T ss_pred CCCeeeeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCccEEEEec---------C---CCCccccEEEEEE
Confidence 33333333335799999999999998 899999999999999999987432211 0 2589999999999
Q ss_pred ccCCCeEEEe-cCCcEEEEEcCCCcCC---------CC------------------CcCCcccccCCCCCceEecccCCc
Q 021484 97 SNTSELLISY-NDELVYLFEKNMGLGP---------SP------------------LSLSPEDLQKREEPQVYSGHRNSQ 148 (312)
Q Consensus 97 ~~~~~~l~s~-~d~~i~iwd~~~~~~~---------~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 148 (312)
+||++.+++. .|.+++|||+.+.... .+ ..+..-.......++.+.||...
T Consensus 244 sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~- 322 (603)
T KOG0318|consen 244 SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS- 322 (603)
T ss_pred CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc-
Confidence 9999988886 6999999999876410 00 11122223444677888999966
Q ss_pred eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE--------------------------------------------
Q 021484 149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-------------------------------------------- 184 (312)
Q Consensus 149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-------------------------------------------- 184 (312)
|+++.. ++++.+|++|+.||.|.-|+..++..-+
T Consensus 323 -ITaLtv-~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~ 400 (603)
T KOG0318|consen 323 -ITALTV-SPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSE 400 (603)
T ss_pred -eeEEEE-cCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccc
Confidence 999998 9999999999999999999976542110
Q ss_pred --------------------------------------------------------------------------------
Q 021484 185 -------------------------------------------------------------------------------- 184 (312)
Q Consensus 185 -------------------------------------------------------------------------------- 184 (312)
T Consensus 401 ~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee 480 (603)
T KOG0318|consen 401 VVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEE 480 (603)
T ss_pred eeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccce
Confidence
Q ss_pred -EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC--CCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484 185 -LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP--PLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 185 -~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.+..|.++|++++++|++.+||++...+.+-+||..+.+.. ...-|+..+. +..|++++.++++++-|..+.||++
T Consensus 481 ~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~-~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 481 AKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKIN-CVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred eeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEE-EEEeCCCceEEEeccccceEEEEEc
Confidence 23357889999999999999999999999999999888752 2333666664 4558999999999999999999999
Q ss_pred cccCcc
Q 021484 262 QRRQTL 267 (312)
Q Consensus 262 ~~~~~~ 267 (312)
.++...
T Consensus 560 ~kP~~~ 565 (603)
T KOG0318|consen 560 KKPAKH 565 (603)
T ss_pred cChhhh
Confidence 876444
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=5.5e-28 Score=187.94 Aligned_cols=225 Identities=18% Similarity=0.286 Sum_probs=185.0
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
....|+|+.+.. ..+++|..|++|+|||..+.. |.+.+ .+|.+.|.|+.|. .+.+++| +
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~--------------c~~~L-~GHtGSVLCLqyd--~rviisGSS 255 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLE--------------CLKIL-TGHTGSVLCLQYD--ERVIVSGSS 255 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEeccccHH--------------HHHhh-hcCCCcEEeeecc--ceEEEecCC
Confidence 467899999864 579999999999999998876 55555 8999999999885 4588887 5
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee---EE
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL---VR 184 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~---~~ 184 (312)
|.+|++||.+++ +++.++-+|... |..+.| +..++++++.|.++.+||+....- .+
T Consensus 256 DsTvrvWDv~tg----------------e~l~tlihHcea--VLhlrf---~ng~mvtcSkDrsiaVWdm~sps~it~rr 314 (499)
T KOG0281|consen 256 DSTVRVWDVNTG----------------EPLNTLIHHCEA--VLHLRF---SNGYMVTCSKDRSIAVWDMASPTDITLRR 314 (499)
T ss_pred CceEEEEeccCC----------------chhhHHhhhcce--eEEEEE---eCCEEEEecCCceeEEEeccCchHHHHHH
Confidence 999999999999 899999999866 999998 467999999999999999886543 34
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
.+.+|...|+.+.| +.+++++++.|.+|++|++.+.+ +.++.+|...+. +..-.++++++|+.|.+|++|++..
T Consensus 315 VLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIA---ClQYr~rlvVSGSSDntIRlwdi~~ 389 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIA---CLQYRDRLVVSGSSDNTIRLWDIEC 389 (499)
T ss_pred HHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccce---ehhccCeEEEecCCCceEEEEeccc
Confidence 56799999999999 55699999999999999999987 477888888772 2344678999999999999999876
Q ss_pred cCccce--------eEeecCCCccCCCCCCCeEEEeecCCCCCC
Q 021484 264 RQTLAY--------RERRYNAADFESDEEEGETYLLGFSDSDAS 299 (312)
Q Consensus 264 ~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 299 (312)
+..+.. ..-..+...+.++.-+|.+-+||+..+.+.
T Consensus 390 G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 390 GACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred cHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCC
Confidence 643322 133445667788888899999999776654
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.1e-27 Score=201.23 Aligned_cols=248 Identities=17% Similarity=0.180 Sum_probs=184.6
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecC-----------------------CC---------------
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS-----------------------PI--------------- 69 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~-----------------------~~--------------- 69 (312)
.|.+.|.++.|+++| ++||+|+.|+.|+||.+...+... ..
T Consensus 265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 599999999999999 899999999999999987611100 00
Q ss_pred CCCC-----Ccccc--cccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe
Q 021484 70 SSDT-----PVDTF--CPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS 142 (312)
Q Consensus 70 ~~~~-----~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (312)
..+. .+-.| .+...+.+|.+.|..|.|+.++-+|.++.|.+|++|++... .+++.|.
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~----------------~CL~~F~ 407 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK----------------ECLKVFS 407 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc----------------ceeeEEe
Confidence 0000 00000 12223478999999999998876666678999999999887 7888886
Q ss_pred cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484 143 GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 143 ~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
|.+ +|+||+|++.|.+|+++|+-||.|+||++...+.+.-.. -..-|++++|.|+|++.+.|+.+|..++|+....
T Consensus 408 -Hnd--fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 408 -HND--FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred -cCC--eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence 764 499999976689999999999999999998776654433 4478999999999999999999999999998876
Q ss_pred CCCC---CCC------ChhhhhhhhccCCCCceeEEecCCceEEEEEeccc------------CccceeEeecCCCccCC
Q 021484 223 DFPP---LPD------NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR------------QTLAYRERRYNAADFES 281 (312)
Q Consensus 223 ~~~~---~~~------~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~------------~~~~~~~~~~~~~~~~~ 281 (312)
++.. +.. ....|...-+...+...++..+.|..|||+|.+.. .......+..++..+.+
T Consensus 484 k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs 563 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS 563 (712)
T ss_pred eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE
Confidence 5311 110 11234444333345557888899999999998332 22233367778999999
Q ss_pred CCCCCeEEEeecCCC
Q 021484 282 DEEEGETYLLGFSDS 296 (312)
Q Consensus 282 ~~~~~~v~~~~~~~~ 296 (312)
..++-.||+|..+..
T Consensus 564 ~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 564 ASEDSWVYIWKNDSF 578 (712)
T ss_pred eecCceEEEEeCCCC
Confidence 989999999997443
No 51
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=2e-26 Score=187.92 Aligned_cols=222 Identities=14% Similarity=0.192 Sum_probs=163.6
Q ss_pred cCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021484 25 KQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 104 (312)
Q Consensus 25 ~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 104 (312)
.|-+|..+++-..|+|.| .++|+|...|+|||||....+. .+++-+..-.++|..|+|+.+++.|+
T Consensus 54 iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~h-------------iLKnef~v~aG~I~Di~Wd~ds~RI~ 119 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKEH-------------ILKNEFQVLAGPIKDISWDFDSKRIA 119 (603)
T ss_pred eeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcce-------------eeeeeeeecccccccceeCCCCcEEE
Confidence 345799999999999998 8999999999999999876432 12222244478899999999998666
Q ss_pred E-ec----CCcEEEEEcCCCcCCC-------------------------CCcCCcccccCCCCCceEecccCCceeeEEE
Q 021484 105 S-YN----DELVYLFEKNMGLGPS-------------------------PLSLSPEDLQKREEPQVYSGHRNSQTVKGVN 154 (312)
Q Consensus 105 s-~~----d~~i~iwd~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 154 (312)
+ +. -|.+.+||..+..+.. +..+.+..-.+++....+..|.. .|.++.
T Consensus 120 avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk--FV~~VR 197 (603)
T KOG0318|consen 120 AVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSK--FVNCVR 197 (603)
T ss_pred EEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccc--ceeeEE
Confidence 6 42 2457788876543211 11111111223344444556664 499999
Q ss_pred EecCCCCEEEEeccCceEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-------
Q 021484 155 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF------- 224 (312)
Q Consensus 155 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~------- 224 (312)
| +|+|.++++++.||++.+||=.+++.+..+. +|.+.|..++|+||+..++|++.|.+++|||+.+.++
T Consensus 198 y-sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 198 Y-SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred E-CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecC
Confidence 9 9999999999999999999999999999997 8999999999999999999999999999999875432
Q ss_pred -------------------------------------CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 225 -------------------------------------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 225 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
..+.+|.+.+ +....++++.++++++.||.|.-|++...
T Consensus 277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~I-TaLtv~~d~~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSI-TALTVSPDGKTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccce-eEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence 1222344444 33335666777888888888888876554
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.1e-27 Score=200.83 Aligned_cols=230 Identities=15% Similarity=0.218 Sum_probs=185.4
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
+.+|..++|||.. -.++++-..|.|++||.+-+.+ ...+ ..|.++|..++|+|.+.+++++ .|
T Consensus 9 SsRvKglsFHP~r-PwILtslHsG~IQlWDYRM~tl--------------i~rF-deHdGpVRgv~FH~~qplFVSGGDD 72 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKR-PWILTSLHSGVIQLWDYRMGTL--------------IDRF-DEHDGPVRGVDFHPTQPLFVSGGDD 72 (1202)
T ss_pred cccccceecCCCC-CEEEEeecCceeeeehhhhhhH--------------Hhhh-hccCCccceeeecCCCCeEEecCCc
Confidence 6689999999998 4899999999999999998762 2222 8899999999999999999997 58
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
-.|++|+..+. +++.++.||.+- |..+.| ++.-.+++++++|.+|+||++.+.+++..+.+
T Consensus 73 ykIkVWnYk~r----------------rclftL~GHlDY--VRt~~F-HheyPWIlSASDDQTIrIWNwqsr~~iavltG 133 (1202)
T KOG0292|consen 73 YKIKVWNYKTR----------------RCLFTLLGHLDY--VRTVFF-HHEYPWILSASDDQTIRIWNWQSRKCIAVLTG 133 (1202)
T ss_pred cEEEEEecccc----------------eehhhhccccce--eEEeec-cCCCceEEEccCCCeEEEEeccCCceEEEEec
Confidence 89999999987 899999999955 999998 89999999999999999999999999999999
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC------------------------------CCCCChhhhhhhh
Q 021484 189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP------------------------------PLPDNAEKIMKAN 238 (312)
Q Consensus 189 ~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~------------------------------~~~~~~~~~~~~~ 238 (312)
|..-|.|..|+|....++++|.|.+||+||+.+-+.. .+.+|...+ .-+
T Consensus 134 HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGV-Nwa 212 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGV-NWA 212 (1202)
T ss_pred CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccccccc-ceE
Confidence 9999999999999999999999999999998643211 122334433 333
Q ss_pred ccCCCCceeEEecCCceEEEEEecccCccce------------eEeecCCCccCCCCCCCeEEEeecCC
Q 021484 239 KQGREDHSRITLTPDVIMHVLRLQRRQTLAY------------RERRYNAADFESDEEEGETYLLGFSD 295 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~~ 295 (312)
.+++.-.++++|+.|..+++|+++....... .-+-|...-+.+..++..+-+||.+.
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 3556668999999999999999865422211 12333344455556666777777644
No 53
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.3e-27 Score=176.98 Aligned_cols=200 Identities=16% Similarity=0.197 Sum_probs=165.3
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEEe
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~ 106 (312)
.|...|.++.|++...+.+++++-|++|++|+....+ .+++| .+|...|...+|+|.- .+++++
T Consensus 102 EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~---------Sv~Tf------~gh~~~Iy~a~~sp~~~nlfas~ 166 (311)
T KOG0277|consen 102 EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN---------SVQTF------NGHNSCIYQAAFSPHIPNLFASA 166 (311)
T ss_pred hhhhheEEeccccccceeEEeeccCCceEeecCCCCc---------ceEee------cCCccEEEEEecCCCCCCeEEEc
Confidence 4899999999999776889999999999999988665 23333 8899999999999966 477775
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEE
Q 021484 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVR 184 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~ 184 (312)
+|+++++||++.. .....+..|... +.++.|...+.+.|++|+.|+.|++||++.- .++.
T Consensus 167 Sgd~~l~lwdvr~~----------------gk~~~i~ah~~E--il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~ 228 (311)
T KOG0277|consen 167 SGDGTLRLWDVRSP----------------GKFMSIEAHNSE--ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLF 228 (311)
T ss_pred cCCceEEEEEecCC----------------CceeEEEeccce--eEeecccccCCcEEEecCCCceEEEEehhhccccce
Confidence 5999999999875 344458888865 9999996667889999999999999998864 5688
Q ss_pred EeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484 185 LMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.+.+|.-.|..++|||... .||+++.|-++||||...+. +.+..-|+.-+....+..-.+.++++.+-|..++||+
T Consensus 229 eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 229 ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred eecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 8899999999999999865 59999999999999998664 3445556666655554444788999999999999997
No 54
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.3e-26 Score=197.20 Aligned_cols=251 Identities=11% Similarity=0.047 Sum_probs=175.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEe-cCC
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDE 109 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~ 109 (312)
.|.....++++ ..+++++.+.....|+...+..+.......... .....+.+|.+.|.+++|+| ++.+|+++ .|+
T Consensus 22 ~i~~~~~~~d~-~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~--~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 22 NVTPSTALWDC-SNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA--SNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ccccccccCCC-CCcEeECCceEEEEEecCCceEEeeccccccCC--CCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 45555566665 456777778888888876544321111111111 11123478999999999999 77888886 599
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCeeEEEeec
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
+|++||+....... .....+..+.+|... |.+++| +|++ ++|++++.|+.|++||+.+++.+..+.+
T Consensus 99 tIkIWdi~~~~~~~---------~~~~~l~~L~gH~~~--V~~l~f-~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 99 TIMGWGIPEEGLTQ---------NISDPIVHLQGHTKK--VGIVSF-HPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred EEEEEecCCCcccc---------ccCcceEEecCCCCc--EEEEEe-CcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 99999997641000 001345678888866 999999 7875 7999999999999999999999999999
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEec----CCceEEEEEecc
Q 021484 189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLT----PDVIMHVLRLQR 263 (312)
Q Consensus 189 ~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~----~d~~i~i~~~~~ 263 (312)
|...|.+++|+|++.+|++++.|++|++||++++.. ..+..|.........+.++...+++.+ .|+.+++||++.
T Consensus 167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 999999999999999999999999999999998764 445556544433344556555666543 478999999876
Q ss_pred cCcccee------------EeecCCCccCCC-CCCCeEEEeecCCCC
Q 021484 264 RQTLAYR------------ERRYNAADFESD-EEEGETYLLGFSDSD 297 (312)
Q Consensus 264 ~~~~~~~------------~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 297 (312)
....... .+.++...+... ..++.|.++++.++.
T Consensus 247 ~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 247 MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 4332211 233444444433 346778888887654
No 55
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.3e-25 Score=190.45 Aligned_cols=230 Identities=13% Similarity=0.180 Sum_probs=192.4
Q ss_pred cceEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484 31 IRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
.+|..++|+..| ..||.|+. -|.+-+|+.++... .... .+|...+++++++|||+++|+| .|
T Consensus 308 ~~I~t~~~N~tG-DWiA~g~~klgQLlVweWqsEsY--------------VlKQ-QgH~~~i~~l~YSpDgq~iaTG~eD 371 (893)
T KOG0291|consen 308 QKILTVSFNSTG-DWIAFGCSKLGQLLVWEWQSESY--------------VLKQ-QGHSDRITSLAYSPDGQLIATGAED 371 (893)
T ss_pred ceeeEEEecccC-CEEEEcCCccceEEEEEeeccce--------------eeec-cccccceeeEEECCCCcEEEeccCC
Confidence 469999999999 78888865 48999999987652 2222 7899999999999999999997 69
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
|+|+|||..++ -+..+|..|... |+.+.| +..++.+++.+.||+|+.||+...+..+++..
T Consensus 372 gKVKvWn~~Sg----------------fC~vTFteHts~--Vt~v~f-~~~g~~llssSLDGtVRAwDlkRYrNfRTft~ 432 (893)
T KOG0291|consen 372 GKVKVWNTQSG----------------FCFVTFTEHTSG--VTAVQF-TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS 432 (893)
T ss_pred CcEEEEeccCc----------------eEEEEeccCCCc--eEEEEE-EecCCEEEEeecCCeEEeeeecccceeeeecC
Confidence 99999999988 689999999977 999999 89999999999999999999999998888875
Q ss_pred Cc-cceEEEEEcCCCCeEEEEeCCC-cEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484 189 DR-HVVNQLEPHPHIPMFATCGIEK-TVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 189 ~~-~~v~~~~~~p~~~~l~t~~~d~-~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
.. -...+++..|.|..+++|+.|. .|.+|+++++++ ..+.+|..++.. ..+++.+..|++++-|.+||+|++-...
T Consensus 433 P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~-l~f~~~~~~LaS~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 433 PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSG-LSFSPDGSLLASGSWDKTVRIWDIFSSS 511 (893)
T ss_pred CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCccee-eEEccccCeEEeccccceEEEEEeeccC
Confidence 43 3567889999999999999776 699999999985 667788888744 4478888999999999999999985441
Q ss_pred c----------cceeEeecCCCccCCCCCCCeEEEeecCCC
Q 021484 266 T----------LAYRERRYNAADFESDEEEGETYLLGFSDS 296 (312)
Q Consensus 266 ~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 296 (312)
. ..-..++|++..++...-+|.+-++|..++
T Consensus 512 ~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 512 GTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred ceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhc
Confidence 1 111277888888888888888888887654
No 56
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=6.1e-26 Score=173.13 Aligned_cols=201 Identities=14% Similarity=0.187 Sum_probs=166.4
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
.||++.|..+.|.+++ +.+++++.|.+++.||+++++ +.... ..|..-+.++.-+.-|. ++.+
T Consensus 87 kgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~tG~--------------~~rk~-k~h~~~vNs~~p~rrg~~lv~S 150 (338)
T KOG0265|consen 87 KGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAETGK--------------RIRKH-KGHTSFVNSLDPSRRGPQLVCS 150 (338)
T ss_pred ccccceeEeeeeccCC-CEEEEecCCceEEEEecccce--------------eeehh-ccccceeeecCccccCCeEEEe
Confidence 3799999999999999 899999999999999999998 33333 78888898888555565 4455
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
++ |+++++||+++. ..++++.... . ++++.| ...+..+.+|+-|+.|++||++.+....
T Consensus 151 gsdD~t~kl~D~R~k----------------~~~~t~~~ky-q--ltAv~f-~d~s~qv~sggIdn~ikvWd~r~~d~~~ 210 (338)
T KOG0265|consen 151 GSDDGTLKLWDIRKK----------------EAIKTFENKY-Q--LTAVGF-KDTSDQVISGGIDNDIKVWDLRKNDGLY 210 (338)
T ss_pred cCCCceEEEEeeccc----------------chhhccccce-e--EEEEEe-cccccceeeccccCceeeeccccCcceE
Confidence 54 999999999987 5666665332 2 899999 8899999999999999999999999999
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-----CCCCCCCh----hhhhhhhccCCCCceeEEecCCce
Q 021484 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----FPPLPDNA----EKIMKANKQGREDHSRITLTPDVI 255 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~~l~s~~~d~~ 255 (312)
.+.+|..+|+.+..+|.|.++.+-+.|.++++||++... +..+.++. ...+.+. |+++.+.+-+++.|..
T Consensus 211 ~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs-wsp~~~~i~ags~dr~ 289 (338)
T KOG0265|consen 211 TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS-WSPNGTKITAGSADRF 289 (338)
T ss_pred EeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee-ccCCCCccccccccce
Confidence 999999999999999999999999999999999987542 23333332 2233433 7888999999999999
Q ss_pred EEEEEeccc
Q 021484 256 MHVLRLQRR 264 (312)
Q Consensus 256 i~i~~~~~~ 264 (312)
+++||....
T Consensus 290 vyvwd~~~r 298 (338)
T KOG0265|consen 290 VYVWDTTSR 298 (338)
T ss_pred EEEeecccc
Confidence 999996654
No 57
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=2.5e-26 Score=184.24 Aligned_cols=237 Identities=14% Similarity=0.211 Sum_probs=178.3
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|.|||.......+.... ...+..+..||...-++++|++...-.+++++.|++|.+||+...... -....+
T Consensus 149 v~Vfd~tk~~s~~~~~~-~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~--------~~~~~p 219 (422)
T KOG0264|consen 149 VYVFDYTKHPSKPKASG-ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE--------DKVVDP 219 (422)
T ss_pred EEEEEeccCCCcccccc-cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC--------Cccccc
Confidence 46788765443332221 222333345788888899999987779999999999999999865421 111245
Q ss_pred cccccCCCccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484 81 RHLIGKNNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 158 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~ 158 (312)
...+.+|...|..++|++... ++++. .|+.+.|||++++ +.++.+...+|... |.+++|.+-
T Consensus 220 ~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--------------~~~~~~~~~ah~~~--vn~~~fnp~ 283 (422)
T KOG0264|consen 220 KTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--------------TSKPSHSVKAHSAE--VNCVAFNPF 283 (422)
T ss_pred eEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--------------CCCCcccccccCCc--eeEEEeCCC
Confidence 566689999999999999775 55554 6999999999952 11566777888876 999999444
Q ss_pred CCCEEEEeccCceEEEEeccC-CeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC-------------
Q 021484 159 NDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD------------- 223 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~------------- 223 (312)
++..||+|+.|++|.+||+++ .+++..+.+|...|..|.|+|.... ||+++.|+.+.|||+..-.
T Consensus 284 ~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgpp 363 (422)
T KOG0264|consen 284 NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPP 363 (422)
T ss_pred CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCc
Confidence 567789999999999999987 4578899999999999999998765 8999999999999986421
Q ss_pred --CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 224 --FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 224 --~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
+..-.+|...+....|-..+...+++.+.|+.++||.+.
T Consensus 364 EllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 364 ELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 122236677776666544467788899999999999865
No 58
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.2e-25 Score=194.14 Aligned_cols=228 Identities=17% Similarity=0.270 Sum_probs=181.9
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||.+.|.++++.. +..++++|+.|.++++||..+++ |...+ .+|...+.++...+ .+++++
T Consensus 246 ~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~--------------C~~~l-~gh~stv~~~~~~~--~~~~sg 307 (537)
T KOG0274|consen 246 VGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGE--------------CTHSL-QGHTSSVRCLTIDP--FLLVSG 307 (537)
T ss_pred cCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCc--------------EEEEe-cCCCceEEEEEccC--ceEeec
Confidence 47999999999987 44899999999999999999998 44444 78999998886643 366665
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
.|.+|++|+++++ ..+..+.+|... |.++.+ + +.++++|+.|++|++||+.+++++..
T Consensus 308 s~D~tVkVW~v~n~----------------~~l~l~~~h~~~--V~~v~~-~--~~~lvsgs~d~~v~VW~~~~~~cl~s 366 (537)
T KOG0274|consen 308 SRDNTVKVWDVTNG----------------ACLNLLRGHTGP--VNCVQL-D--EPLLVSGSYDGTVKVWDPRTGKCLKS 366 (537)
T ss_pred cCCceEEEEeccCc----------------ceEEEecccccc--EEEEEe-c--CCEEEEEecCceEEEEEhhhceeeee
Confidence 5999999999988 788888888866 999987 4 89999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC--CCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
+.+|...|+++.+.+. ..+++|+.|++|++||+.+. ++.++.+|..-+... ...+..|++++.|+.|++||...
T Consensus 367 l~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l---~~~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 367 LSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL---LLRDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred ecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc---ccccceeEeccccccEEEeeccc
Confidence 9999999999988666 88999999999999999998 467777776666322 33467999999999999999877
Q ss_pred cCccceeEee---------cCCCccCCCCCCCeEEEeecCCCC
Q 021484 264 RQTLAYRERR---------YNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 264 ~~~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
.+.....+-. .....+.....++.+.++|...+.
T Consensus 443 ~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 443 GECLRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred CceeeeeccCCcccEEEeecCcceEEEEecCCeeEEEecccCc
Confidence 6443222111 011223333456667777776654
No 59
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.2e-25 Score=186.28 Aligned_cols=249 Identities=17% Similarity=0.260 Sum_probs=192.3
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|.+|+-.+.+...+... +...|+++.|+++| ..|++|..+|.|.|||..+.+ ..
T Consensus 199 vylW~~~s~~v~~l~~~-----------~~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~~k--------------~~ 252 (484)
T KOG0305|consen 199 VYLWSASSGSVTELCSF-----------GEELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKEQK--------------KT 252 (484)
T ss_pred EEEEecCCCceEEeEec-----------CCCceEEEEECCCC-CEEEEeecCCeEEEEehhhcc--------------cc
Confidence 46788776654444433 24579999999999 899999999999999998776 33
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+...|...|.+++|+ +..+.++ .++.|..+|++... .....+.+|... |+.+.| +++
T Consensus 253 ~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~---------------~~~~~~~~H~qe--VCgLkw-s~d 312 (484)
T KOG0305|consen 253 RTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ---------------HVVSTLQGHRQE--VCGLKW-SPD 312 (484)
T ss_pred ccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch---------------hhhhhhhcccce--eeeeEE-CCC
Confidence 33323399999999998 5567776 59999999998762 233347888876 999999 999
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC-CeEEEEe--CCCcEEEccCCCCCCCCCCCChhhhhh
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI-PMFATCG--IEKTVKLWAPMPTDFPPLPDNAEKIMK 236 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~-~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~ 236 (312)
++++++|+.|+.+.|||....+++..+..|.+.|..++|+|-. ..||+|+ .|+.|++||..++...........|..
T Consensus 313 ~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcs 392 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCS 392 (484)
T ss_pred CCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceee
Confidence 9999999999999999998889999999999999999999965 4588776 899999999998876444444555555
Q ss_pred hhccCCC-CceeEE-ecCCceEEEEEecccCc----------cceeEeecCCCccCCCCCCCeEEEeecCCC
Q 021484 237 ANKQGRE-DHSRIT-LTPDVIMHVLRLQRRQT----------LAYRERRYNAADFESDEEEGETYLLGFSDS 296 (312)
Q Consensus 237 ~~~~~~~-~~~l~s-~~~d~~i~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 296 (312)
+. |++. .+++.+ |-.+..+.+|+..+... ..+...+|++..+.+...++.+-+|.+-+.
T Consensus 393 L~-Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 393 LI-WSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EE-EcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 55 5554 455555 44668999998754322 123377888888888888888888887664
No 60
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-26 Score=197.25 Aligned_cols=223 Identities=14% Similarity=0.227 Sum_probs=173.8
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|-+||+...-..+++...+ .|...++++.|++..+++|++|+.||+|++||++..+- .
T Consensus 112 i~vWdlnk~~rnk~l~~f~--------EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--------------~ 169 (839)
T KOG0269|consen 112 ISVWDLNKSIRNKLLTVFN--------EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--------------K 169 (839)
T ss_pred EEEEecCccccchhhhHhh--------hhccceeeeeeccCCccEEEecCCCceEEEEeeecccc--------------c
Confidence 4588887643344433321 38899999999999999999999999999999997761 1
Q ss_pred cccccCCCccEEEEEEccCC-CeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484 81 RHLIGKNNIHITGLAYSNTS-ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 158 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~ 158 (312)
.. ..+..+.|..++|+|.. ..++++ ..|.+++||++... +....+..|.++ |.++.| +|
T Consensus 170 ~t-~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---------------r~~~k~~AH~Gp--V~c~nw-hP 230 (839)
T KOG0269|consen 170 ST-FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---------------RCEKKLTAHNGP--VLCLNW-HP 230 (839)
T ss_pred cc-ccccchhhhceeeccCCCceEEEecCCceEEEeeccCch---------------hHHHHhhcccCc--eEEEee-cC
Confidence 11 25567889999999965 477776 68999999998753 566778899976 999999 89
Q ss_pred CCCEEEEeccCceEEEEeccCCeeEEEeec-CccceEEEEEcCCCCe-EEEEe--CCCcEEEccCCCCCC--CCCCCChh
Q 021484 159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIPM-FATCG--IEKTVKLWAPMPTDF--PPLPDNAE 232 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~-l~t~~--~d~~i~iwd~~~~~~--~~~~~~~~ 232 (312)
++.+||+|+.|++|+|||+.+++......- ...+|..|+|-|..++ ||+++ .|-.|+|||++..-+ .++..|..
T Consensus 231 nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~ 310 (839)
T KOG0269|consen 231 NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTD 310 (839)
T ss_pred CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCc
Confidence 999999999999999999986554332222 2368999999999887 77776 678999999987754 56667777
Q ss_pred hhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 233 KIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 233 ~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.+....|.+.+...+.+++.|+.+..-.++..
T Consensus 311 ~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 311 SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred cccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 77666666667889999999998765544433
No 61
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=4.2e-26 Score=182.91 Aligned_cols=219 Identities=21% Similarity=0.282 Sum_probs=175.6
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY- 106 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~- 106 (312)
|.+.|+.+.+-|+++.++|+++..+.+.|||..+..-.. .....+.+...+.+|...-++++|++... .|+++
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~-----~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~ 197 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKP-----KASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS 197 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcc-----cccccCCCceEEEeecccccccccccccceeEeecc
Confidence 889999999999999999999999999999987543111 11113445555688888788999999876 56665
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc--CCeeEE
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK--GGKLVR 184 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~--~~~~~~ 184 (312)
.|++|++||+...... -....+...+.+|... |..++|+..+...+++++.|+.+.|||++ +.++..
T Consensus 198 ~d~~i~lwdi~~~~~~---------~~~~~p~~~~~~h~~~--VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 198 DDHTICLWDINAESKE---------DKVVDPKTIFSGHEDV--VEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred CCCcEEEEeccccccC---------CccccceEEeecCCcc--eehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc
Confidence 6999999999865211 0111456678889866 99999965567788999999999999999 566677
Q ss_pred EeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484 185 LMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
..++|.+.|.+++|+|-+.. |||||.|++|++||++... +.++.+|...++..-|-......|++.+.|+.+.+||+
T Consensus 267 ~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDl 346 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDL 346 (422)
T ss_pred cccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEec
Confidence 78899999999999997655 9999999999999999764 68888899999777654447889999999999999998
Q ss_pred cc
Q 021484 262 QR 263 (312)
Q Consensus 262 ~~ 263 (312)
.+
T Consensus 347 s~ 348 (422)
T KOG0264|consen 347 SR 348 (422)
T ss_pred cc
Confidence 65
No 62
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=7.7e-25 Score=189.84 Aligned_cols=221 Identities=13% Similarity=0.129 Sum_probs=158.1
Q ss_pred EeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeEEEe-cCCcEEEEEcCCCcCCCCCc
Q 021484 49 GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLISY-NDELVYLFEKNMGLGPSPLS 126 (312)
Q Consensus 49 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~ 126 (312)
|+.++.|++|+..... . ...+.+|...|.+++|+|+ +.+|+++ .|+.|++||+.++.....
T Consensus 50 GG~~gvI~L~~~~r~~--------------~-v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-- 112 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP--------------P-VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-- 112 (568)
T ss_pred CCceeEEEeeecCCCc--------------e-EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc--
Confidence 5567888888876442 1 2223789999999999997 6788886 599999999976410000
Q ss_pred CCcccccCCCCCceEecccCCceeeEEEEecCCCCE-EEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE
Q 021484 127 LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF 205 (312)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 205 (312)
....+...+.+|... |.+++| +|++.. |++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|
T Consensus 113 ------~i~~p~~~L~gH~~~--V~sVaf-~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lL 182 (568)
T PTZ00420 113 ------EIKDPQCILKGHKKK--ISIIDW-NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLL 182 (568)
T ss_pred ------ccccceEEeecCCCc--EEEEEE-CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEE
Confidence 000234467788865 999999 898875 5789999999999999998877776 56789999999999999
Q ss_pred EEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhcc----CCCCceeEEecCCc----eEEEEEecccCcccee-Ee---
Q 021484 206 ATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQ----GREDHSRITLTPDV----IMHVLRLQRRQTLAYR-ER--- 272 (312)
Q Consensus 206 ~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~l~s~~~d~----~i~i~~~~~~~~~~~~-~~--- 272 (312)
++++.|+.|+|||++++.. ..+.+|...+.....+ ++++.++++++.++ .+++||++.....+.. ..
T Consensus 183 at~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~ 262 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA 262 (568)
T ss_pred EEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC
Confidence 9999999999999998864 5566666544322222 36777888877664 7999999864333222 11
Q ss_pred ---------ecCCCccCCCCCCCeEEEeecCCC
Q 021484 273 ---------RYNAADFESDEEEGETYLLGFSDS 296 (312)
Q Consensus 273 ---------~~~~~~~~~~~~~~~v~~~~~~~~ 296 (312)
.+.+..+.++..++.++++++..+
T Consensus 263 ~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 263 SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred ccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 112334445566777888877554
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=1.6e-25 Score=175.82 Aligned_cols=210 Identities=14% Similarity=0.305 Sum_probs=166.4
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee--cCCCC--------CCCCcccccccccccCCCccEEEEEEc
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHW--YSPIS--------SDTPVDTFCPRHLIGKNNIHITGLAYS 97 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~~ 97 (312)
||...|.+++..+++ ..+++|+.|..|++|+..+... ..... .......-.+...+.+|.++|.++.|+
T Consensus 191 GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred ccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 899999999999999 8999999999999999332110 00000 011112223445558999999999999
Q ss_pred cCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEec
Q 021484 98 NTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 177 (312)
Q Consensus 98 ~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~ 177 (312)
+.+..+.++-|.+|+.||+.++ .....+.+.. .+.++.+ +|..++|++|+.|..+++||.
T Consensus 270 d~~v~yS~SwDHTIk~WDletg----------------~~~~~~~~~k---sl~~i~~-~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 270 DATVIYSVSWDHTIKVWDLETG----------------GLKSTLTTNK---SLNCISY-SPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred CCCceEeecccceEEEEEeecc----------------cceeeeecCc---ceeEeec-ccccceeeecCCCCceeecCC
Confidence 9444444456999999999988 5655555443 3899999 899999999999999999999
Q ss_pred cCCe---eEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEec
Q 021484 178 KGGK---LVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLT 251 (312)
Q Consensus 178 ~~~~---~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 251 (312)
+++. ...++.+|...|.++.|+|...+ |++++.|+++++||+++.. +..+.+|...++...|. ++.++++|+
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGG 407 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGG 407 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEecc
Confidence 8753 45678899999999999998877 9999999999999999876 57788888888777664 346899999
Q ss_pred CCceEEEEE
Q 021484 252 PDVIMHVLR 260 (312)
Q Consensus 252 ~d~~i~i~~ 260 (312)
.|.+++++.
T Consensus 408 aD~~l~i~~ 416 (423)
T KOG0313|consen 408 ADNKLRIFK 416 (423)
T ss_pred CcceEEEec
Confidence 999999986
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.1e-25 Score=181.92 Aligned_cols=229 Identities=14% Similarity=0.221 Sum_probs=172.9
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec-
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN- 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~- 107 (312)
...|+++.|-.+| ++||+|...|.|++||+.+.. ....+.+|+.++..+.|+|++. .+++++
T Consensus 68 k~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~r~---------------iLR~~~ah~apv~~~~f~~~d~t~l~s~sD 131 (487)
T KOG0310|consen 68 KDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKSRV---------------ILRQLYAHQAPVHVTKFSPQDNTMLVSGSD 131 (487)
T ss_pred ccceeEEEeecCC-eEEEccCCcCcEEEeccccHH---------------HHHHHhhccCceeEEEecccCCeEEEecCC
Confidence 5679999999999 899999999999999966532 2222389999999999999886 666675
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEEEe
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLM 186 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~ 186 (312)
|+.+++||+.+. .....+.+|.+- |.+.+|.+.++..+++|+.||.|++||++.. ..+.++
T Consensus 132 d~v~k~~d~s~a----------------~v~~~l~~htDY--VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 132 DKVVKYWDLSTA----------------YVQAELSGHTDY--VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred CceEEEEEcCCc----------------EEEEEecCCcce--eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence 778899999886 444477888854 9999995556779999999999999999976 666666
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
. |..+|..+.+-|.|..+++++ ...|++||+.++. +..+..|.+.+ ++.....++..|++++-|+.+++|++.+.
T Consensus 194 n-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtV-TcL~l~s~~~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 194 N-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTV-TCLRLASDSTRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred c-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceE-EEEEeecCCceEeecccccceEEEEccce
Confidence 5 889999999999999999997 4689999998554 33444466666 55556678899999999999999996544
Q ss_pred Ccccee-EeecCCCccCCCCCCCeEEEeecCCCC
Q 021484 265 QTLAYR-ERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 265 ~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
+.++. .++...-++... ++++..+++.++|-
T Consensus 271 -Kvv~s~~~~~pvLsiavs-~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 271 -KVVHSWKYPGPVLSIAVS-PDDQTVVIGMSNGL 302 (487)
T ss_pred -EEEEeeecccceeeEEec-CCCceEEEecccce
Confidence 22222 222222222211 23336677777764
No 65
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4e-26 Score=178.33 Aligned_cols=221 Identities=11% Similarity=0.172 Sum_probs=172.9
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
..||.++|.|++=+|.....+++|+.||.|++||+.... |...+ .+|.+.|..|++.. +.++..
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--------------~~~~f-~AH~G~V~Gi~v~~-~~~~tv 125 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--------------CIRTF-KAHEGLVRGICVTQ-TSFFTV 125 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhh--------------hhhee-ecccCceeeEEecc-cceEEe
Confidence 368999999999999766789999999999999999876 33333 88999999999987 456666
Q ss_pred ecCCcEEEEEcCCCc----------------------CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CE
Q 021484 106 YNDELVYLFEKNMGL----------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EY 162 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~ 162 (312)
|.|.+|+.|-+.... .+....+.+|+.....+++.+.-.... +.++.| +|.. ..
T Consensus 126 gdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dt--i~svkf-NpvETsI 202 (433)
T KOG0268|consen 126 GDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADS--ISSVKF-NPVETSI 202 (433)
T ss_pred cCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCc--eeEEec-CCCcchh
Confidence 789999999854321 223345678888877788888766654 999999 6654 56
Q ss_pred EEEeccCceEEEEeccCCeeEE------------------------------------------EeecCccceEEEEEcC
Q 021484 163 VMSGSDCGHLFIWKKKGGKLVR------------------------------------------LMVGDRHVVNQLEPHP 200 (312)
Q Consensus 163 l~~~~~dg~v~iwd~~~~~~~~------------------------------------------~~~~~~~~v~~~~~~p 200 (312)
|++|..|+.|.+||++++++++ ..++|...|.++.|+|
T Consensus 203 Las~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred eeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 6777799999999998776543 3346777899999999
Q ss_pred CCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhh--hhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484 201 HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKI--MKANKQGREDHSRITLTPDVIMHVLRLQRRQT 266 (312)
Q Consensus 201 ~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~ 266 (312)
.|+.+++||.|++||||..+.+....+- |.+.+ +-+..++.|..++++|+.|+.+++|..+...+
T Consensus 283 tG~EfvsgsyDksIRIf~~~~~~SRdiY-htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 283 TGQEFVSGSYDKSIRIFPVNHGHSRDIY-HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred CcchhccccccceEEEeecCCCcchhhh-hHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 9999999999999999999877643322 33322 34456788999999999999999998654433
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=8.9e-27 Score=179.87 Aligned_cols=222 Identities=14% Similarity=0.209 Sum_probs=178.3
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|.+||.-+++..+-+.-+.. ..+-.|..+|.|+.|+.+. ..+|+|+.||.|++|.+++++ |.
T Consensus 237 iEVWny~~GKlrKDLkYQAq---d~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKvWri~tG~--------------Cl 298 (508)
T KOG0275|consen 237 IEVWNYTTGKLRKDLKYQAQ---DNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKVWRIETGQ--------------CL 298 (508)
T ss_pred eeeehhccchhhhhhhhhhh---cceeecccceEEEeecccH-HHhhccCcCCcEEEEEEecch--------------HH
Confidence 46899887765444332211 1122378899999999998 899999999999999999999 66
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+-..|...|+++.|+.++..+.++ .|.++++.-+.++ ++++.|+||... |+...| .++
T Consensus 299 RrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----------------K~LKEfrGHsSy--vn~a~f-t~d 359 (508)
T KOG0275|consen 299 RRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG----------------KCLKEFRGHSSY--VNEATF-TDD 359 (508)
T ss_pred HHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc----------------hhHHHhcCcccc--ccceEE-cCC
Confidence 66667999999999999999877776 5999999999998 899999999955 999999 999
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeec-----------------------------------------------Cccc
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVG-----------------------------------------------DRHV 192 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----------------------------------------------~~~~ 192 (312)
|..+++++.||+|++|+.++.+++.+++. ..+.
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGd 439 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGD 439 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCc
Confidence 99999999999999999887665442221 1123
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484 193 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 193 v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
..+.+.+|.|.++...++|+.++.|...++.+ .+++-|.+.++... -+|..+.+++-+.|+.+++|.
T Consensus 440 Fi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~-HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 440 FINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLT-HHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccc-cCcccchhhhhcccchhhhcC
Confidence 34466788888888888999999999888876 55666777776665 567788999999999999994
No 67
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.4e-25 Score=190.12 Aligned_cols=211 Identities=16% Similarity=0.213 Sum_probs=176.1
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.|.+.|.+++.+|++ ..+++|+.|.+|++||..--.-. ......+-....... -.-...|.++++||||++|+.+
T Consensus 452 AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~--~gt~~k~lsl~~~rt-Lel~ddvL~v~~Spdgk~LaVsL 527 (888)
T KOG0306|consen 452 AHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSV--PGTQKKVLSLKHTRT-LELEDDVLCVSVSPDGKLLAVSL 527 (888)
T ss_pred ccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEecc--CcccceeeeeccceE-EeccccEEEEEEcCCCcEEEEEe
Confidence 689999999999999 89999999999999998632210 000000101111111 1235779999999999999998
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
-|.++++|-+.+- +.-..+.||.-+ |.|+.. +|+++.++||+.|.+|+||-++-|.|-+.+
T Consensus 528 LdnTVkVyflDtl----------------KFflsLYGHkLP--V~smDI-S~DSklivTgSADKnVKiWGLdFGDCHKS~ 588 (888)
T KOG0306|consen 528 LDNTVKVYFLDTL----------------KFFLSLYGHKLP--VLSMDI-SPDSKLIVTGSADKNVKIWGLDFGDCHKSF 588 (888)
T ss_pred ccCeEEEEEecce----------------eeeeeecccccc--eeEEec-cCCcCeEEeccCCCceEEeccccchhhhhh
Confidence 5999999999886 677788999966 999999 999999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
-+|...|.++.|.|....+.++|.|+.|+-||-...+ +..+.+|...+...+ ..+++.++++++.|..+++|...
T Consensus 589 fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLa-v~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 589 FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLA-VSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeE-EcCCCCeEEeccCCceeEeeecc
Confidence 9999999999999999999999999999999987765 688888998886554 78899999999999999999843
No 68
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.4e-24 Score=184.06 Aligned_cols=255 Identities=13% Similarity=0.161 Sum_probs=195.7
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++|+..+.++...+.+. .+.+..|.|.+ +++++|...|.+.+||+.+..++
T Consensus 396 ikiWn~~t~kciRTi~~~-------------y~l~~~Fvpgd-~~Iv~G~k~Gel~vfdlaS~~l~-------------- 447 (888)
T KOG0306|consen 396 IKIWNRDTLKCIRTITCG-------------YILASKFVPGD-RYIVLGTKNGELQVFDLASASLV-------------- 447 (888)
T ss_pred EEEEEccCcceeEEeccc-------------cEEEEEecCCC-ceEEEeccCCceEEEEeehhhhh--------------
Confidence 578999888877776653 58899999977 89999999999999999987632
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+ .+|.+.|++++.+|+++.++++ .|.+|++||..-... .+.... ..-..+..+++. -.. .|.++++ ||+
T Consensus 448 Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-~~gt~~--k~lsl~~~rtLe-l~d--dvL~v~~-Spd 519 (888)
T KOG0306|consen 448 ETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPGTQK--KVLSLKHTRTLE-LED--DVLCVSV-SPD 519 (888)
T ss_pred hhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-cCcccc--eeeeeccceEEe-ccc--cEEEEEE-cCC
Confidence 222 6899999999999999988886 599999999864311 000000 000011222232 222 3999999 999
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN 238 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~ 238 (312)
+++|+++--|.+|+||-+++-+....+.+|.-||.++..+|+++.++|||.|++|++|-+.-+.. ..+.+|...++...
T Consensus 520 gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999987764 77888989886554
Q ss_pred ccCCCCceeEEecCCceEEEEEecc---------cCcccee-EeecCCCccCCCCCCCeEEEee
Q 021484 239 KQGREDHSRITLTPDVIMHVLRLQR---------RQTLAYR-ERRYNAADFESDEEEGETYLLG 292 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~~~~~---------~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~ 292 (312)
+.|...++++++.|+.++-||-.. +...+|- .-.|++..+.+...+-.+-.|.
T Consensus 600 -F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 600 -FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred -EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 667888999999999999997433 2233333 5566666666654443444443
No 69
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.1e-26 Score=179.75 Aligned_cols=179 Identities=21% Similarity=0.394 Sum_probs=143.6
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 107 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 107 (312)
||..+|.-+.|||+. ++|++++.|..+.+||+.++.+... ...++...+.+.+|.|||..+++|+
T Consensus 267 gh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~tgd~~~~--------------y~~~~~~S~~sc~W~pDg~~~V~Gs 331 (519)
T KOG0293|consen 267 GHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDTGDLRHL--------------YPSGLGFSVSSCAWCPDGFRFVTGS 331 (519)
T ss_pred cccCceEEEEECCCC-CeEEecCchHheeeccCCcchhhhh--------------cccCcCCCcceeEEccCCceeEecC
Confidence 689999999999998 8999999999999999999984332 2233456667777777777666653
Q ss_pred -CCcEEEEEcCCCc------------------------------------------------------------------
Q 021484 108 -DELVYLFEKNMGL------------------------------------------------------------------ 120 (312)
Q Consensus 108 -d~~i~iwd~~~~~------------------------------------------------------------------ 120 (312)
|+.+..||+....
T Consensus 332 ~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~L 411 (519)
T KOG0293|consen 332 PDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLAL 411 (519)
T ss_pred CCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEE
Confidence 7777777765432
Q ss_pred -CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEc
Q 021484 121 -GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH 199 (312)
Q Consensus 121 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~ 199 (312)
.-.++.+..|++...+.++.+.||+....+..-+|--.+..++++|++|+.|+||+..+++++..+.+|...|++|+|+
T Consensus 412 vnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswN 491 (519)
T KOG0293|consen 412 VNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWN 491 (519)
T ss_pred EEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecC
Confidence 0112345666688888889999998877787778844456899999999999999999999999999999999999999
Q ss_pred CCCCe-EEEEeCCCcEEEccCCC
Q 021484 200 PHIPM-FATCGIEKTVKLWAPMP 221 (312)
Q Consensus 200 p~~~~-l~t~~~d~~i~iwd~~~ 221 (312)
|..+. ||++|.||+||||.+..
T Consensus 492 P~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 492 PADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCHHHhhccCCCCeEEEecCCc
Confidence 98876 99999999999998764
No 70
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=4.5e-25 Score=164.53 Aligned_cols=161 Identities=16% Similarity=0.232 Sum_probs=138.6
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||++.|..+-|.... +.|++++.|++||+||.+++..++. + ....+|+++..+++|++|..+
T Consensus 140 ~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~s--------------L--~~~s~VtSlEvs~dG~ilTia 202 (334)
T KOG0278|consen 140 SGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQS--------------L--EFNSPVTSLEVSQDGRILTIA 202 (334)
T ss_pred cCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEE--------------E--ecCCCCcceeeccCCCEEEEe
Confidence 4699999999999977 7888889999999999999973322 2 125678999999999999999
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
..+.|..||..+- .+++.+.-.. .|.+.+. +|+...+++|++|..++.||..+++.+..+
T Consensus 203 ~gssV~Fwdaksf----------------~~lKs~k~P~---nV~SASL-~P~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 203 YGSSVKFWDAKSF----------------GLLKSYKMPC---NVESASL-HPKKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred cCceeEEeccccc----------------cceeeccCcc---ccccccc-cCCCceEEecCcceEEEEEeccCCceeeec
Confidence 9999999999876 5666555332 3888887 899999999999999999999999998886
Q ss_pred -ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484 187 -VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 187 -~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
++|.++|.++.|+|+|...++||+||+|+||....++.
T Consensus 263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 89999999999999999999999999999999776543
No 71
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=2e-24 Score=172.55 Aligned_cols=202 Identities=17% Similarity=0.177 Sum_probs=167.0
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
++||...|+.+.|+|+. ..+++++.|..|++|...... + ......|..+|+.+..+|.|.||++
T Consensus 257 ~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~s--------------~-~~~~~~h~~~V~~ls~h~tgeYlls 320 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLSS--------------E-PTSSRPHEEPVTGLSLHPTGEYLLS 320 (506)
T ss_pred ccCcceEEEEEEeccch-hheeecCCcceEEeecccccc--------------C-ccccccccccceeeeeccCCcEEEE
Confidence 37899999999999998 799999999999999988664 2 2333789999999999999999998
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
+ .|++..+.|++++ ..+...........+++.+| +|||-+|.+|..||.|+|||+.++..+.
T Consensus 321 As~d~~w~Fsd~~~g----------------~~lt~vs~~~s~v~~ts~~f-HpDgLifgtgt~d~~vkiwdlks~~~~a 383 (506)
T KOG0289|consen 321 ASNDGTWAFSDISSG----------------SQLTVVSDETSDVEYTSAAF-HPDGLIFGTGTPDGVVKIWDLKSQTNVA 383 (506)
T ss_pred ecCCceEEEEEccCC----------------cEEEEEeeccccceeEEeeE-cCCceEEeccCCCceEEEEEcCCccccc
Confidence 7 5999999999887 44444433223234899999 9999999999999999999999999999
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.|.+|+++|..++|+.+|-+|++++.|+.|++||++..+. .++.-.....+....+...+.+|+.++.+-.|++.+
T Consensus 384 ~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 384 KFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred cCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 9999999999999999999999999999999999998763 444433332334445667788999997777777765
No 72
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.1e-24 Score=168.46 Aligned_cols=250 Identities=14% Similarity=0.180 Sum_probs=188.9
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.|...|.-+.||++| ++||+++.|.+..+|.+....- +.....+.+|..+|..+.||||.++|+++
T Consensus 222 ~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~------------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVH------------FKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred hCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcc------------eeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 489999999999999 8999999999999999875431 24445558999999999999999998887
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.+..+.+||+.++ .....+... ....+.+++| .|+|..+++|+.|+.+..||++ |..+..+
T Consensus 289 ~~e~~~lwDv~tg----------------d~~~~y~~~-~~~S~~sc~W-~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 289 FDEVLSLWDVDTG----------------DLRHLYPSG-LGFSVSSCAW-CPDGFRFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred chHheeeccCCcc----------------hhhhhcccC-cCCCcceeEE-ccCCceeEecCCCCcEEEecCC-cchhhcc
Confidence 4888999999998 565555432 1233899999 8999999999999999999997 5556666
Q ss_pred ecCc-cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484 187 VGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 187 ~~~~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
++-. ..|.+++..++|+++++.+.|..|++++..+.....+.....++ .....+.++.+.+.--.+..+++||+....
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~i-ts~~iS~d~k~~LvnL~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPI-TSFSISKDGKLALVNLQDQEIHLWDLEENK 428 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCce-eEEEEcCCCcEEEEEcccCeeEEeecchhh
Confidence 6443 57999999999999999999999999998876544333233333 444467788888888888889999986421
Q ss_pred --------cc-cee---Eeec-CCCccCCCCCCCeEEEeecCCCCCCCCCCCceeeee
Q 021484 266 --------TL-AYR---ERRY-NAADFESDEEEGETYLLGFSDSDASSEGGGNQRECI 310 (312)
Q Consensus 266 --------~~-~~~---~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 310 (312)
+. .|+ ++.. +...++++.+++.||+|+-..+.--.+..|-.+.|+
T Consensus 429 lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vN 486 (519)
T KOG0293|consen 429 LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVN 486 (519)
T ss_pred HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceee
Confidence 11 111 3333 336677888888899998877764444444444443
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=2.5e-24 Score=189.42 Aligned_cols=258 Identities=18% Similarity=0.229 Sum_probs=191.8
Q ss_pred CccceEEEEEcCCCCcEEEEEe--CCCeEEEEEccCCe-ecCCCC--CCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCH-WYSPIS--SDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 103 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 103 (312)
+...|.++..+|++ ..++||+ .|+.++||+...-- ...... .+. ....+..|.+.|.|+.|+|||++|
T Consensus 12 ~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k------~l~~m~~h~~sv~CVR~S~dG~~l 84 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPK------HLCTMDDHDGSVNCVRFSPDGSYL 84 (942)
T ss_pred CCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcccch------hheeeccccCceeEEEECCCCCeE
Confidence 45679999999999 8999999 89999999976321 000000 011 112236799999999999999999
Q ss_pred EEec-CCcEEEEEcCC-CcCCCCCc-CCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC
Q 021484 104 ISYN-DELVYLFEKNM-GLGPSPLS-LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 180 (312)
Q Consensus 104 ~s~~-d~~i~iwd~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~ 180 (312)
|+|+ |+.|.||.... +.+..... -.......++....+.+|... |..++| +|++.+|++++.|++|.+|+.++.
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~D--V~Dv~W-sp~~~~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSD--VLDVNW-SPDDSLLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCc--cceecc-CCCccEEEEecccceEEEEccccc
Confidence 9985 88899999874 11111111 112234556778889999977 999999 999999999999999999999999
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-------------------------------------
Q 021484 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD------------------------------------- 223 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~------------------------------------- 223 (312)
+.+..+.+|.+.|-.+.|.|-|+|||+-+.|++|++|++..-.
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n 241 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN 241 (942)
T ss_pred eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence 9999999999999999999999999999999999999954200
Q ss_pred ----------------CCCCCCChhhhhhhhccCC-----C--------C----ceeEEecCCceEEEEEecccCcc---
Q 021484 224 ----------------FPPLPDNAEKIMKANKQGR-----E--------D----HSRITLTPDVIMHVLRLQRRQTL--- 267 (312)
Q Consensus 224 ----------------~~~~~~~~~~~~~~~~~~~-----~--------~----~~l~s~~~d~~i~i~~~~~~~~~--- 267 (312)
-..+.+|..++ .++.+.+ . . ..+++|+.|+.+-||.......+
T Consensus 242 ~~~~~~~IieR~tWk~~~~LvGH~~p~-evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi 320 (942)
T KOG0973|consen 242 GGKSTIAIIERGTWKVDKDLVGHSAPV-EVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI 320 (942)
T ss_pred CCcceeEEEecCCceeeeeeecCCCce-EEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh
Confidence 00112333322 2222221 0 1 15678999999999986543322
Q ss_pred --------ceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484 268 --------AYRERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 268 --------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
.-+.+++++..+....-+|.|+++.|++++
T Consensus 321 ~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 321 HNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred hhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 123789999999999999999999998764
No 74
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=2e-24 Score=168.93 Aligned_cols=231 Identities=10% Similarity=0.102 Sum_probs=167.5
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCC-CCCCcccc--------------------------c
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS-SDTPVDTF--------------------------C 79 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~--------------------------~ 79 (312)
.||+..|+++.|+.++ .+||||..+|.|+||...++.....+. .-..+..+ .
T Consensus 103 tgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 103 TGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred cCCCCceEEEEEccCc-eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence 3699999999999999 899999999999999999887554332 10001000 1
Q ss_pred ccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCc------CCccc---------------------
Q 021484 80 PRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLS------LSPED--------------------- 131 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~------~~~~~--------------------- 131 (312)
...++.+|+.++++=.|.|+|+.++++ .||+|++||+.++....... .+.-.
T Consensus 182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence 224457899999999999999988887 69999999998874110000 00000
Q ss_pred ccCCCCCceEe--------cccCC-ceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC
Q 021484 132 LQKREEPQVYS--------GHRNS-QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI 202 (312)
Q Consensus 132 ~~~~~~~~~~~--------~~~~~-~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 202 (312)
...++.+.... .+... ..|.++.+ +..-.+.|+|+.||+|.|||+...++..... |..+|..+.|-+ .
T Consensus 262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~-ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t 338 (399)
T KOG0296|consen 262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPS-SSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-T 338 (399)
T ss_pred cccceEEEecCCCCccccccchhhhhhhhhccc-ccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC-c
Confidence 01111111111 11111 11333343 4455678999999999999998776655554 888999999998 7
Q ss_pred CeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 203 PMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 203 ~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
.+|++++.+|.|+.||.+++.+ .++.+|...++..+ .+++.+++++++.|+..++|++.
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~-ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA-LSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeeccCceEEeeeccccceEEEEecCchheeEEE-EcCCCcEEEEecCCCeEEEEecC
Confidence 8999999999999999999875 77889999997765 67899999999999999999864
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.1e-23 Score=158.04 Aligned_cols=219 Identities=12% Similarity=0.143 Sum_probs=168.0
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||.+.|-.++|+|..+.+|++++.|.+|++||++.+++. ..+ .. ...-.-+.|+|+|++++.+
T Consensus 61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~--------------~~i-~~-~~eni~i~wsp~g~~~~~~ 124 (313)
T KOG1407|consen 61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCT--------------ARI-ET-KGENINITWSPDGEYIAVG 124 (313)
T ss_pred cCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEE--------------EEe-ec-cCcceEEEEcCCCCEEEEe
Confidence 5799999999999998899999999999999999998742 222 22 2223467899999988887
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
.|..|...|.++. +.....+ .. ..+.-++| +.++.+++..+.-|.|.|.....-+++..
T Consensus 125 ~kdD~it~id~r~~----------------~~~~~~~-~~--~e~ne~~w-~~~nd~Fflt~GlG~v~ILsypsLkpv~s 184 (313)
T KOG1407|consen 125 NKDDRITFIDARTY----------------KIVNEEQ-FK--FEVNEISW-NNSNDLFFLTNGLGCVEILSYPSLKPVQS 184 (313)
T ss_pred cCcccEEEEEeccc----------------ceeehhc-cc--ceeeeeee-cCCCCEEEEecCCceEEEEeccccccccc
Confidence 5999999999875 3333332 22 23788888 67777777777789999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
+++|.....++.|+|+|++||+|+.|..+.+||+...-. ..+. .....+....++.++++|++++.|..|-|-++.++
T Consensus 185 i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is-RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 185 IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS-RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec-cccCceEEEEeccCcceeeccCccceEEeEecccC
Confidence 999999999999999999999999999999999986543 4444 33444455668889999999999999877776666
Q ss_pred CccceeEeecCCCccCCC
Q 021484 265 QTLAYRERRYNAADFESD 282 (312)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~ 282 (312)
...-.+........++-|
T Consensus 264 d~~~eI~~~~~t~tVAWH 281 (313)
T KOG1407|consen 264 DRVWEIPCEGPTFTVAWH 281 (313)
T ss_pred CeEEEeeccCCceeEEec
Confidence 444333333333333333
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=5.7e-24 Score=187.18 Aligned_cols=217 Identities=17% Similarity=0.298 Sum_probs=172.9
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCC---eecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC---HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 104 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 104 (312)
.|.+.|+|+.|+|+| .+||+|+.|+.|.||..... ...........+..+.....+.+|...|..++|+|++.+|+
T Consensus 67 ~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV 145 (942)
T ss_pred cccCceeEEEECCCC-CeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence 489999999999999 89999999999999998741 11111112234444455556689999999999999999999
Q ss_pred Eec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484 105 SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 183 (312)
Q Consensus 105 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 183 (312)
+++ |++|.+||..+. +.++.+.+|... |..+.| +|-|+||++-+.|++|+||.+.+....
T Consensus 146 S~s~DnsViiwn~~tF----------------~~~~vl~~H~s~--VKGvs~-DP~Gky~ASqsdDrtikvwrt~dw~i~ 206 (942)
T KOG0973|consen 146 SVSLDNSVIIWNAKTF----------------ELLKVLRGHQSL--VKGVSW-DPIGKYFASQSDDRTLKVWRTSDWGIE 206 (942)
T ss_pred EecccceEEEEccccc----------------eeeeeeeccccc--ccceEE-CCccCeeeeecCCceEEEEEcccceee
Confidence 975 999999999987 899999999977 999999 999999999999999999996532111
Q ss_pred ----------------------------------------------------EEeecCccceEEEEEcCC-----CC---
Q 021484 184 ----------------------------------------------------RLMVGDRHVVNQLEPHPH-----IP--- 203 (312)
Q Consensus 184 ----------------------------------------------------~~~~~~~~~v~~~~~~p~-----~~--- 203 (312)
..+-+|.+++.++.|+|. .+
T Consensus 207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence 145689999999999982 11
Q ss_pred ---------eEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 204 ---------MFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 204 ---------~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.+|+|+.|++|.||.....++ .....-....+....|++++..|++++.||+|.++.+...
T Consensus 287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred ccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 578899999999999866653 2332233333455568999999999999999999988654
No 77
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.1e-24 Score=182.01 Aligned_cols=218 Identities=17% Similarity=0.226 Sum_probs=175.6
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE-ccCCCeEEEec
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-SNTSELLISYN 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~~ 107 (312)
|.+-|++++..-++ +.|++++.|-+|++|+...+. .+|...+ ..|.+.|.++++ .++..++|+++
T Consensus 72 HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~------------~~c~sti-r~H~DYVkcla~~ak~~~lvaSgG 137 (735)
T KOG0308|consen 72 HSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDN------------TFCMSTI-RTHKDYVKCLAYIAKNNELVASGG 137 (735)
T ss_pred hHhHHhhHHhhcCC-CceEEecCCceEEEeecccCc------------chhHhhh-hcccchheeeeecccCceeEEecC
Confidence 88889999999888 799999999999999998663 2355555 889999999999 67777888875
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
|+.|.+||++++.... ....+. .....+. |+... |.+++. ++.|..+++|+..+.|++||.++++.+..
T Consensus 138 LD~~IflWDin~~~~~l--~~s~n~----~t~~sl~sG~k~s--iYSLA~-N~t~t~ivsGgtek~lr~wDprt~~kimk 208 (735)
T KOG0308|consen 138 LDRKIFLWDINTGTATL--VASFNN----VTVNSLGSGPKDS--IYSLAM-NQTGTIIVSGGTEKDLRLWDPRTCKKIMK 208 (735)
T ss_pred CCccEEEEEccCcchhh--hhhccc----cccccCCCCCccc--eeeeec-CCcceEEEecCcccceEEeccccccceee
Confidence 9999999999762100 000000 1111222 66655 999998 89999999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
+++|+..|..+..+++|..++++|.||+|++||+..++ +.++..|...+.+.. .+++=..+.+|+.|+.|..-+++..
T Consensus 209 LrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~-~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 209 LRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ-SSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe-eCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999999999999999886 577777887775544 3345567899999999999999886
Q ss_pred Ccccee
Q 021484 265 QTLAYR 270 (312)
Q Consensus 265 ~~~~~~ 270 (312)
.+...+
T Consensus 288 ~~~tli 293 (735)
T KOG0308|consen 288 AKSTLI 293 (735)
T ss_pred hhheEe
Confidence 554444
No 78
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.5e-24 Score=177.91 Aligned_cols=216 Identities=16% Similarity=0.248 Sum_probs=178.9
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|+|||..+.+..+.+... |..+|-+++|+. ..+.+|+.|+.|..+|++..+. .
T Consensus 241 v~iwD~~~~k~~~~~~~~----------h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~--------------~ 293 (484)
T KOG0305|consen 241 VQIWDVKEQKKTRTLRGS----------HASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQH--------------V 293 (484)
T ss_pred EEEEehhhccccccccCC----------cCceeEEEeccC---ceEEEecCCCcEEEEEEecchh--------------h
Confidence 467777765544433331 788999999993 6899999999999999998762 2
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP- 158 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~- 158 (312)
...+.+|...|..++|++++.++|++ .|+.+.|||.... .+...+..|... |..++| +|
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~----------------~p~~~~~~H~aA--VKA~aw-cP~ 354 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP----------------EPKFTFTEHTAA--VKALAW-CPW 354 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc----------------cccEEEecccee--eeEeee-CCC
Confidence 22348899999999999999999997 5999999999766 688889999977 999999 55
Q ss_pred CCCEEEEec--cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEccCCCCC-CCCCCCChhh
Q 021484 159 NDEYVMSGS--DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTD-FPPLPDNAEK 233 (312)
Q Consensus 159 ~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~--~d~~i~iwd~~~~~-~~~~~~~~~~ 233 (312)
....||+|+ .|+.|++||..+++.+..+.. ...|.++.|++..+.|+++. .+..|.||+..+.. ...+.+|...
T Consensus 355 q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~R 433 (484)
T KOG0305|consen 355 QSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSR 433 (484)
T ss_pred ccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcce
Confidence 567788865 599999999999999888764 46899999999998776654 67799999998876 4778889999
Q ss_pred hhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 234 IMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 234 ~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
++.++ +++++..+++++.|.++++|++-..
T Consensus 434 Vl~la-~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 434 VLYLA-LSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eEEEE-ECCCCCEEEEecccCcEEeccccCC
Confidence 87766 7899999999999999999998654
No 79
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=7.1e-24 Score=172.87 Aligned_cols=264 Identities=12% Similarity=0.106 Sum_probs=180.1
Q ss_pred CeeecccCccc-eeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021484 1 MWQFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 1 v~~wd~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 79 (312)
|++||++-... .+.|... +|.-...|.++.|++.+ ..|++.+.....+++|-...++......++-+..+.
T Consensus 191 v~~wDf~gMdas~~~fr~l-------~P~E~h~i~sl~ys~Tg-~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~ 262 (641)
T KOG0772|consen 191 VKFWDFQGMDASMRSFRQL-------QPCETHQINSLQYSVTG-DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMY 262 (641)
T ss_pred EEEEecccccccchhhhcc-------CcccccccceeeecCCC-CeEEEEecCcceeEEccCCceeeeeeccchhhhhhh
Confidence 57899874331 1112221 12235679999999999 677777777899999988777666665555554432
Q ss_pred ccccccCCCccEEEEEEccCCC-eEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc---CCceeeEEE
Q 021484 80 PRHLIGKNNIHITGLAYSNTSE-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR---NSQTVKGVN 154 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~ 154 (312)
..++|...+++.+|+|..+ .+++ +.||++++||+...+ +..+.++... ...+++.++
T Consensus 263 ---nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k---------------~q~qVik~k~~~g~Rv~~tsC~ 324 (641)
T KOG0772|consen 263 ---NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK---------------SQLQVIKTKPAGGKRVPVTSCA 324 (641)
T ss_pred ---ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch---------------hheeEEeeccCCCcccCceeee
Confidence 2278999999999999885 4555 569999999998752 3334443221 113488999
Q ss_pred EecCCCCEEEEeccCceEEEEeccCC--ee-EEEeecCcc--ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCC
Q 021484 155 FFGPNDEYVMSGSDCGHLFIWKKKGG--KL-VRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPL 227 (312)
Q Consensus 155 ~~s~~~~~l~~~~~dg~v~iwd~~~~--~~-~~~~~~~~~--~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~ 227 (312)
| ++++++||+|+.||.|.+|+.... .+ ...-++|.. .|++++||++|++|++-+.|+++++||++..+ +...
T Consensus 325 ~-nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 325 W-NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred c-CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhh
Confidence 9 999999999999999999997532 22 223357876 89999999999999999999999999998754 2332
Q ss_pred CCChh-hhhhhhccCCCCceeEEecCC------ceEEEEEecccCc----------cceeEeecCCCccCCCCCCCeEEE
Q 021484 228 PDNAE-KIMKANKQGREDHSRITLTPD------VIMHVLRLQRRQT----------LAYRERRYNAADFESDEEEGETYL 290 (312)
Q Consensus 228 ~~~~~-~~~~~~~~~~~~~~l~s~~~d------~~i~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~ 290 (312)
.+-.. -.....+++++..++++|+.- +.+.+++-.+... .+...+-|....+..+..+|.+++
T Consensus 404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence 22221 123445588899999997753 6788887433211 111244555555555555566665
Q ss_pred e
Q 021484 291 L 291 (312)
Q Consensus 291 ~ 291 (312)
+
T Consensus 484 y 484 (641)
T KOG0772|consen 484 Y 484 (641)
T ss_pred E
Confidence 5
No 80
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=4.9e-24 Score=184.23 Aligned_cols=211 Identities=17% Similarity=0.274 Sum_probs=173.3
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
+++||+.+..+..++.. |...|.++...+ ..+++|+.|.+|++|++.++. +.
T Consensus 273 ~rvWd~~sg~C~~~l~g-----------h~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~--------------~l 324 (537)
T KOG0274|consen 273 ERVWDCSTGECTHSLQG-----------HTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGA--------------CL 324 (537)
T ss_pred EEeEecCCCcEEEEecC-----------CCceEEEEEccC---ceEeeccCCceEEEEeccCcc--------------eE
Confidence 58999999988777764 788899998876 578889999999999999887 33
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+ .+|..+|.++..+ +.+++++ .|+.|++||+.++ ++++.+.+|... |.++.+ ...
T Consensus 325 ~l~-~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~----------------~cl~sl~gH~~~--V~sl~~-~~~ 382 (537)
T KOG0274|consen 325 NLL-RGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG----------------KCLKSLSGHTGR--VYSLIV-DSE 382 (537)
T ss_pred EEe-ccccccEEEEEec--CCEEEEEecCceEEEEEhhhc----------------eeeeeecCCcce--EEEEEe-cCc
Confidence 333 6699999999988 6677776 5999999999988 899999999977 999977 444
Q ss_pred CCEEEEeccCceEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCC-Chhhhhh
Q 021484 160 DEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-NAEKIMK 236 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~ 236 (312)
+.+++|+.|+.|++||+++. +++..+.+|.+-|..+.+ .++.|++++.|++|++||...++. ..+.+ +...+..
T Consensus 383 -~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~ 459 (537)
T KOG0274|consen 383 -NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSA 459 (537)
T ss_pred -ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEE
Confidence 89999999999999999999 999999999988866655 778999999999999999988764 55554 3333322
Q ss_pred hhccCCCCceeEEecCCceEEEEEecccCcc
Q 021484 237 ANKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 237 ~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
.. . ....+++.+.++.+++||++.....
T Consensus 460 l~-~--~~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 460 LA-L--GKEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred ee-c--CcceEEEEecCCeeEEEecccCchh
Confidence 22 1 2468899999999999999877443
No 81
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2.1e-22 Score=148.48 Aligned_cols=205 Identities=16% Similarity=0.206 Sum_probs=167.4
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC----CCeE
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT----SELL 103 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l 103 (312)
.|++.|+|.+|+|.| +++++|+.|.+|++..+....+... -...-+..|.+.|..++|-.+ +.+|
T Consensus 87 hhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~~----------g~dle~nmhdgtirdl~fld~~~s~~~il 155 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNAT----------GHDLEFNMHDGTIRDLAFLDDPESGGAIL 155 (350)
T ss_pred ccCccEEEEEecCcc-CeEEecCCCceEEEEeccccccccc----------CcceeeeecCCceeeeEEecCCCcCceEE
Confidence 489999999999999 8999999999999987765442111 111122678999999999654 3488
Q ss_pred EEec--CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe
Q 021484 104 ISYN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 181 (312)
Q Consensus 104 ~s~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~ 181 (312)
+++. |..|++=|...+ +..+.+.+|..- |..+ | +-++-.+++|+.|.+|++||++-..
T Consensus 156 ~s~gagdc~iy~tdc~~g----------------~~~~a~sghtgh--ilal-y-swn~~m~~sgsqdktirfwdlrv~~ 215 (350)
T KOG0641|consen 156 ASAGAGDCKIYITDCGRG----------------QGFHALSGHTGH--ILAL-Y-SWNGAMFASGSQDKTIRFWDLRVNS 215 (350)
T ss_pred EecCCCcceEEEeecCCC----------------CcceeecCCccc--EEEE-E-EecCcEEEccCCCceEEEEeeeccc
Confidence 8853 777888888877 788889999965 7776 3 5678999999999999999999888
Q ss_pred eEEEeec--C-----ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484 182 LVRLMVG--D-----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 182 ~~~~~~~--~-----~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
++.++.. | ...|..++..|.|++|++|..|..-.+||++.++ +..+..|...+ .+..+++...++++++.|
T Consensus 216 ~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadi-r~vrfsp~a~yllt~syd 294 (350)
T KOG0641|consen 216 CVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADI-RCVRFSPGAHYLLTCSYD 294 (350)
T ss_pred eeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccce-eEEEeCCCceEEEEeccc
Confidence 8877742 2 2578999999999999999999999999999988 46777777766 666789999999999999
Q ss_pred ceEEEEEeccc
Q 021484 254 VIMHVLRLQRR 264 (312)
Q Consensus 254 ~~i~i~~~~~~ 264 (312)
..|++-|++..
T Consensus 295 ~~ikltdlqgd 305 (350)
T KOG0641|consen 295 MKIKLTDLQGD 305 (350)
T ss_pred ceEEEeecccc
Confidence 99999998753
No 82
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3e-23 Score=159.54 Aligned_cols=201 Identities=15% Similarity=0.183 Sum_probs=156.3
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eE
Q 021484 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LL 103 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l 103 (312)
++.|.++|++++.+- .++++|+.|.+|+|||+++.. .. ..+..|.+.|+++.|.+.-. .|
T Consensus 39 ~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k~~--------------ql-g~ll~HagsitaL~F~~~~S~shL 100 (362)
T KOG0294|consen 39 FSAHAGSITALAVSG---PYVASGSSDETIHIYDMRKRK--------------QL-GILLSHAGSITALKFYPPLSKSHL 100 (362)
T ss_pred ccccccceeEEEecc---eeEeccCCCCcEEEEeccchh--------------hh-cceeccccceEEEEecCCcchhhe
Confidence 356999999999964 699999999999999999775 22 22267899999999999874 56
Q ss_pred EEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021484 104 ISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 104 ~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
+++ .||.|.+|+.... .++..+++|... |+.++. +|.+++.++.+.|+.++.|++-.|+.
T Consensus 101 lS~sdDG~i~iw~~~~W----------------~~~~slK~H~~~--Vt~lsi-HPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 101 LSGSDDGHIIIWRVGSW----------------ELLKSLKAHKGQ--VTDLSI-HPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred eeecCCCcEEEEEcCCe----------------EEeeeecccccc--cceeEe-cCCCceEEEEcCCceeeeehhhcCcc
Confidence 665 6999999999887 799999999987 999999 89999999999999999999877654
Q ss_pred EEEeecC---------------------------------------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 183 VRLMVGD---------------------------------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 183 ~~~~~~~---------------------------------------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
-..+... ...+.++.|. ++..|++|+.|+.|++||.....
T Consensus 162 a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~ 240 (362)
T KOG0294|consen 162 AFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDT 240 (362)
T ss_pred ceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCc
Confidence 2222110 0112233332 34567888889999999988765
Q ss_pred -CCCCCCChhhhhhhhcc-CCCCceeEEecCCceEEEEEeccc
Q 021484 224 -FPPLPDNAEKIMKANKQ-GREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 224 -~~~~~~~~~~~~~~~~~-~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
+..+.+|.+.+-..... .+++.+|++.+.||.|+|||+...
T Consensus 241 ~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 241 PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 35667788887555433 346789999999999999998765
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=5.4e-24 Score=173.54 Aligned_cols=226 Identities=16% Similarity=0.181 Sum_probs=161.6
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
++|...|.++++.|.| ..|++|+.|.+|++||+..-.. ..+. .+.+.......|.+++|++.|. +|+.
T Consensus 164 ~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMda--------s~~~--fr~l~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDA--------SMRS--FRQLQPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred cCCceEEEEeeecCCC-ceeeeccccceEEEEecccccc--------cchh--hhccCcccccccceeeecCCCCeEEEE
Confidence 5789999999999999 8999999999999999985431 1111 2233334456799999999997 4555
Q ss_pred ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-eEE
Q 021484 106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVR 184 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~ 184 (312)
+...+.+|+|.......... . +-+...-+..-+||... +++.+|++.+.+.+++++.||++++||+...+ .+.
T Consensus 233 sg~aqakl~DRdG~~~~e~~--K--GDQYI~Dm~nTKGHia~--lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFS--K--GDQYIRDMYNTKGHIAE--LTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred ecCcceeEEccCCceeeeee--c--cchhhhhhhccCCceee--eeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 67889999997654100000 0 00000112233577765 99999944456789999999999999987543 333
Q ss_pred Eee-----cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC---C-CCChh-hhhhhhccCCCCceeEEecCCc
Q 021484 185 LMV-----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP---L-PDNAE-KIMKANKQGREDHSRITLTPDV 254 (312)
Q Consensus 185 ~~~-----~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~---~-~~~~~-~~~~~~~~~~~~~~l~s~~~d~ 254 (312)
.++ +..-+++.++|+|+++.+|+|+.||.|.+|+..+..... + ..|.. .-+++..++.++++|++=+.|.
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD 386 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC
Confidence 333 223478999999999999999999999999986654322 1 23433 2356777899999999999999
Q ss_pred eEEEEEecccCccce
Q 021484 255 IMHVLRLQRRQTLAY 269 (312)
Q Consensus 255 ~i~i~~~~~~~~~~~ 269 (312)
.+++||+++.++...
T Consensus 387 tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLN 401 (641)
T ss_pred ceeeeeccccccchh
Confidence 999999998765543
No 84
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.4e-24 Score=184.63 Aligned_cols=206 Identities=19% Similarity=0.221 Sum_probs=161.9
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEEe-cCC
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-NDE 109 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~d~ 109 (312)
.+..++|+....++|||++..|.|.+||+...- +. .....+..|...+.++.|++.. .+|++| .||
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~-----------rn-k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg 156 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI-----------RN-KLLTVFNEHERSANKLDFHSTEPNILISGSQDG 156 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc-----------cc-hhhhHhhhhccceeeeeeccCCccEEEecCCCc
Confidence 456788987666899999999999999998521 00 2223348899999999999977 478887 499
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEEEeec
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVG 188 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~ 188 (312)
.|++||++.. +...++.+.... |++|.|....+.+++++.+.|.|.+||++.. ++...+.+
T Consensus 157 ~vK~~DlR~~----------------~S~~t~~~nSES--iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A 218 (839)
T KOG0269|consen 157 TVKCWDLRSK----------------KSKSTFRSNSES--IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA 218 (839)
T ss_pred eEEEEeeecc----------------cccccccccchh--hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc
Confidence 9999999987 667777776644 9999994446888999999999999999854 56677889
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC-CCChhhhhhhhccCCCCceeE-Ee--cCCceEEEEEeccc
Q 021484 189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL-PDNAEKIMKANKQGREDHSRI-TL--TPDVIMHVLRLQRR 264 (312)
Q Consensus 189 ~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~-s~--~~d~~i~i~~~~~~ 264 (312)
|.++|.++.|+|++.+|||||.|++|+||+..+.+.... ..+....+....|-|+..+.+ +. ..|..|+|||+++.
T Consensus 219 H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 219 HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence 999999999999999999999999999999987664332 234555566777777655444 33 34789999999987
Q ss_pred Ccc
Q 021484 265 QTL 267 (312)
Q Consensus 265 ~~~ 267 (312)
-.+
T Consensus 299 YIP 301 (839)
T KOG0269|consen 299 YIP 301 (839)
T ss_pred ccc
Confidence 544
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.3e-22 Score=156.32 Aligned_cols=217 Identities=12% Similarity=0.168 Sum_probs=160.6
Q ss_pred ceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCcc
Q 021484 11 ATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIH 90 (312)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (312)
..+.+.+.+.+-.+.++||...|.+++.+|-+ ..+++++.|++|++||++..+ |...+ +...
T Consensus 81 tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~--------------cqg~l---~~~~ 142 (311)
T KOG1446|consen 81 TIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKK--------------CQGLL---NLSG 142 (311)
T ss_pred ceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCC--------------CceEE---ecCC
Confidence 34556666666666679999999999999988 899999999999999999776 22222 1222
Q ss_pred EEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc-cCCceeeEEEEecCCCCEEEEecc
Q 021484 91 ITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSGSD 168 (312)
Q Consensus 91 i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~s~~~~~l~~~~~ 168 (312)
-..+||.|+|.++|.+. .+.|++||+++..+ .+-.++.-. ......+.+.| +|+|++|+.++.
T Consensus 143 ~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dk--------------gPF~tf~i~~~~~~ew~~l~F-S~dGK~iLlsT~ 207 (311)
T KOG1446|consen 143 RPIAAFDPEGLIFALANGSELIKLYDLRSFDK--------------GPFTTFSITDNDEAEWTDLEF-SPDGKSILLSTN 207 (311)
T ss_pred CcceeECCCCcEEEEecCCCeEEEEEecccCC--------------CCceeEccCCCCccceeeeEE-cCCCCEEEEEeC
Confidence 34679999999999985 44999999987521 122233222 11133899999 999999999999
Q ss_pred CceEEEEeccCCeeEEEeecCccc---eEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCC
Q 021484 169 CGHLFIWKKKGGKLVRLMVGDRHV---VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGRED 244 (312)
Q Consensus 169 dg~v~iwd~~~~~~~~~~~~~~~~---v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 244 (312)
.+.+++.|.-+|..+..+.++... ..+.+|.|+++++++|+.||+|.+|+++++.. ..+.+.......+..+. .
T Consensus 208 ~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fn--P 285 (311)
T KOG1446|consen 208 ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFN--P 285 (311)
T ss_pred CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccC--C
Confidence 999999999999998888776532 25788999999999999999999999998874 44443222222333333 3
Q ss_pred ceeEEecCCceEEEEEec
Q 021484 245 HSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 245 ~~l~s~~~d~~i~i~~~~ 262 (312)
.+.+-.+.+..+-+|-..
T Consensus 286 ~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 286 RYAMFVSASSNLVFWLPD 303 (311)
T ss_pred ceeeeeecCceEEEEecc
Confidence 566667778888888543
No 86
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-22 Score=152.72 Aligned_cols=201 Identities=11% Similarity=0.100 Sum_probs=169.6
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
||..+++.+.++.+| .+|.+++.|.+..+|-...++ ..-.+ .+|.+.|+++..+-+.+.++++
T Consensus 8 GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~nGe--------------rlGty-~GHtGavW~~Did~~s~~liTGS 71 (327)
T KOG0643|consen 8 GHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLNGE--------------RLGTY-DGHTGAVWCCDIDWDSKHLITGS 71 (327)
T ss_pred cCccccceEEecCCC-cEEEEecCCCCceEEEecCCc--------------eeeee-cCCCceEEEEEecCCcceeeecc
Confidence 699999999999999 899999999999999987776 22222 8999999999999999999997
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-----CceEEEEecc---
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-----CGHLFIWKKK--- 178 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-----dg~v~iwd~~--- 178 (312)
.|.++++||++++ +.+..++.. .+|..+.| +++|++++...+ .+.|.++|++
T Consensus 72 AD~t~kLWDv~tG----------------k~la~~k~~---~~Vk~~~F-~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 72 ADQTAKLWDVETG----------------KQLATWKTN---SPVKRVDF-SFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred ccceeEEEEcCCC----------------cEEEEeecC---CeeEEEee-ccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 5999999999998 676666533 34999999 999999887764 4679999987
Q ss_pred ----CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecC
Q 021484 179 ----GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTP 252 (312)
Q Consensus 179 ----~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 252 (312)
..+++..+..+...++.+-|.|-+.++++|..||.|..||++++. +.....|...+ .....+++..++++++.
T Consensus 132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~I-nd~q~s~d~T~FiT~s~ 210 (327)
T KOG0643|consen 132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKI-NDLQFSRDRTYFITGSK 210 (327)
T ss_pred hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccc-ccccccCCcceEEeccc
Confidence 456678888888999999999999999999999999999999875 24444455544 55668889999999999
Q ss_pred CceEEEEEecccC
Q 021484 253 DVIMHVLRLQRRQ 265 (312)
Q Consensus 253 d~~i~i~~~~~~~ 265 (312)
|.+-++||+.+-.
T Consensus 211 Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 211 DTTAKLVDVRTLE 223 (327)
T ss_pred Cccceeeecccee
Confidence 9999999987654
No 87
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=2e-23 Score=164.13 Aligned_cols=166 Identities=16% Similarity=0.289 Sum_probs=136.6
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
.+|...=++++|||..--.|++|.--+.|++|...++.+. .-...+.+|...|-.++|||... +|++
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~------------vd~~Pf~gH~~SVEDLqWSptE~~vfaS 275 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK------------VDQRPFTGHTKSVEDLQWSPTEDGVFAS 275 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCcee------------ecCccccccccchhhhccCCccCceEEe
Confidence 5788999999999954347889988899999999988753 12222367999999999999876 8888
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC---Ce
Q 021484 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---GK 181 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~---~~ 181 (312)
++ |+.|+|||++.+.. +.....+.|... |.-++| +....+|++|+.||+++|||+++ ++
T Consensus 276 cS~DgsIrIWDiRs~~~--------------~~~~~~kAh~sD--VNVISW-nr~~~lLasG~DdGt~~iwDLR~~~~~~ 338 (440)
T KOG0302|consen 276 CSCDGSIRIWDIRSGPK--------------KAAVSTKAHNSD--VNVISW-NRREPLLASGGDDGTLSIWDLRQFKSGQ 338 (440)
T ss_pred eecCceEEEEEecCCCc--------------cceeEeeccCCc--eeeEEc-cCCcceeeecCCCceEEEEEhhhccCCC
Confidence 75 99999999998621 233344677766 999999 77777999999999999999874 67
Q ss_pred eEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCC
Q 021484 182 LVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMP 221 (312)
Q Consensus 182 ~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~ 221 (312)
++..++-|..+|+++.|+|.... |++++.|.+|.+||+..
T Consensus 339 pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 339 PVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred cceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 89999999999999999997654 88888999999999864
No 88
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.3e-22 Score=154.05 Aligned_cols=233 Identities=14% Similarity=0.160 Sum_probs=183.7
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec-
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN- 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~- 107 (312)
...|+++.|+++| ..+++++.|-++++||..+++. ...+ ..+...+..++|..... .+.++.
T Consensus 14 ~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~g~~--------------~~ti-~skkyG~~~~~Fth~~~~~i~sStk 77 (311)
T KOG1446|consen 14 NGKINSLDFSDDG-LLLITSSEDDSLRLYDSLSGKQ--------------VKTI-NSKKYGVDLACFTHHSNTVIHSSTK 77 (311)
T ss_pred CCceeEEEecCCC-CEEEEecCCCeEEEEEcCCCce--------------eeEe-ecccccccEEEEecCCceEEEccCC
Confidence 5679999999999 7888999999999999998873 3333 45566778888877665 455543
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
|.+|+..++.++ +.++.|.||... |.+++. +|.+..+++++.|++|++||++..++...+
T Consensus 78 ~d~tIryLsl~dN----------------kylRYF~GH~~~--V~sL~~-sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l 138 (311)
T KOG1446|consen 78 EDDTIRYLSLHDN----------------KYLRYFPGHKKR--VNSLSV-SPKDDTFLSSSLDKTVRLWDLRVKKCQGLL 138 (311)
T ss_pred CCCceEEEEeecC----------------ceEEEcCCCCce--EEEEEe-cCCCCeEEecccCCeEEeeEecCCCCceEE
Confidence 999999999988 899999999976 999998 999999999999999999999988877666
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC---CC--CCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF---PP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.....+ .++|.|+|-++|++.....|++||++.... .+ +......-+....+++++.+++-.+..+.+++.|.
T Consensus 139 ~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA 216 (311)
T KOG1446|consen 139 NLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA 216 (311)
T ss_pred ecCCCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc
Confidence 543333 488999999999999878999999987532 22 22233444566678889999998888888888875
Q ss_pred cccC-------------ccceeEeecCCCccCCCCCCCeEEEeecCCCCCC
Q 021484 262 QRRQ-------------TLAYRERRYNAADFESDEEEGETYLLGFSDSDAS 299 (312)
Q Consensus 262 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 299 (312)
-.+. ...-..+.|++..+.++.++|++.+|+.+.+..-
T Consensus 217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 3321 1122367788999999999999999999777543
No 89
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=4.3e-23 Score=164.95 Aligned_cols=200 Identities=16% Similarity=0.238 Sum_probs=162.2
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.|..+|+.+..+|.| .+|++++.|++..+.|++++.+.. ...- ....-.+++.+|+|||.+|.++
T Consensus 301 ~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt------------~vs~-~~s~v~~ts~~fHpDgLifgtgt 366 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLT------------VVSD-ETSDVEYTSAAFHPDGLIFGTGT 366 (506)
T ss_pred cccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEE------------EEee-ccccceeEEeeEcCCceEEeccC
Confidence 388899999999999 899999999999999999987421 1111 1223458999999999999998
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.|+.|++||+.++ .....|.+|..+ |..++| +.+|.||+++++|+.|++||++.-+...++
T Consensus 367 ~d~~vkiwdlks~----------------~~~a~Fpght~~--vk~i~F-sENGY~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQ----------------TNVAKFPGHTGP--VKAISF-SENGYWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred CCceEEEEEcCCc----------------cccccCCCCCCc--eeEEEe-ccCceEEEEEecCCeEEEEEehhhccccee
Confidence 5999999999987 678889999977 999999 999999999999999999999988877777
Q ss_pred ecCc-cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC---CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484 187 VGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 187 ~~~~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.... ..|.++.|.+.|.+|+.++.|=+|++++-.+.. ...+..|. ......++.....++++++.|..++++.+
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s-g~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS-GLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc-cccceeeecccceEEeeccchhheEEeec
Confidence 5432 479999999999999999888888888755544 34444444 23455666667889999999998888753
No 90
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.9e-23 Score=179.43 Aligned_cols=202 Identities=12% Similarity=0.150 Sum_probs=157.7
Q ss_pred CcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-Ce
Q 021484 24 SKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-EL 102 (312)
Q Consensus 24 ~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 102 (312)
+.+.||.+.|.++.|+.++ +|++++.|.+||+|++...++ +.. -.|.+-|+|++|+|-. ++
T Consensus 363 ~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~C--------------L~~--F~HndfVTcVaFnPvDDry 424 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKEC--------------LKV--FSHNDFVTCVAFNPVDDRY 424 (712)
T ss_pred hhhhccchhheecccccCC--eeEeccccccEEeecCCCcce--------------eeE--EecCCeeEEEEecccCCCc
Confidence 4446999999999999975 999999999999999998873 322 4689999999999955 69
Q ss_pred EEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe
Q 021484 103 LISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 181 (312)
Q Consensus 103 l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~ 181 (312)
+++|+ |+.|+||++... .+.....-. ..|++++| .|+|++.+.|+.+|.+++|+....+
T Consensus 425 FiSGSLD~KvRiWsI~d~-----------------~Vv~W~Dl~--~lITAvcy-~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 425 FISGSLDGKVRLWSISDK-----------------KVVDWNDLR--DLITAVCY-SPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred EeecccccceEEeecCcC-----------------eeEeehhhh--hhheeEEe-ccCCceEEEEEeccEEEEEEccCCe
Confidence 99986 999999999764 333333233 34999999 9999999999999999999998877
Q ss_pred eEEEeec--C------ccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC-CCCCCChhhh-hhhhccCCCCceeEEe
Q 021484 182 LVRLMVG--D------RHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF-PPLPDNAEKI-MKANKQGREDHSRITL 250 (312)
Q Consensus 182 ~~~~~~~--~------~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~l~s~ 250 (312)
....+.- | ...|+.+.|.|...- ++..+.|..|||+|.+...+ ..+.+..+.- ...+.+..++.+++++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 7654431 1 127999999987664 77778899999999976553 4444333221 1233456699999999
Q ss_pred cCCceEEEEEecc
Q 021484 251 TPDVIMHVLRLQR 263 (312)
Q Consensus 251 ~~d~~i~i~~~~~ 263 (312)
+.|..|++|++..
T Consensus 565 seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 565 SEDSWVYIWKNDS 577 (712)
T ss_pred ecCceEEEEeCCC
Confidence 9999999999743
No 91
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.1e-23 Score=155.14 Aligned_cols=235 Identities=12% Similarity=0.161 Sum_probs=176.4
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc--CCCeEEE
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLIS 105 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s 105 (312)
.|.+.|.++...-.+ .+|||+++|++|+|+..+.... . ....-+.+|.++|..++|.. .|.+||+
T Consensus 9 ~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~~-----------s-~ll~~L~Gh~GPVwqv~wahPk~G~iLAS 75 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNGQ-----------S-KLLAELTGHSGPVWKVAWAHPKFGTILAS 75 (299)
T ss_pred hhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCCC-----------c-eeeeEecCCCCCeeEEeecccccCcEeeE
Confidence 388889988888888 8999999999999999986541 0 11222389999999999987 7889999
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC--CCEEEEeccCceEEEEeccCC-e
Q 021484 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGG-K 181 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~--~~~l~~~~~dg~v~iwd~~~~-~ 181 (312)
++ ||+|.||.-+++ .......+..|... |++++| .|. |-.|++++.||.|.|.+.+.. .
T Consensus 76 csYDgkVIiWke~~g--------------~w~k~~e~~~h~~S--VNsV~w-apheygl~LacasSDG~vsvl~~~~~g~ 138 (299)
T KOG1332|consen 76 CSYDGKVIIWKEENG--------------RWTKAYEHAAHSAS--VNSVAW-APHEYGLLLACASSDGKVSVLTYDSSGG 138 (299)
T ss_pred eecCceEEEEecCCC--------------chhhhhhhhhhccc--ceeecc-cccccceEEEEeeCCCcEEEEEEcCCCC
Confidence 86 999999998776 22445566778866 999999 665 557899999999999987754 2
Q ss_pred --eEEEeecCccceEEEEEcCC---C-----------CeEEEEeCCCcEEEccCCCCC---CCCCCCChhhhhhhhccCC
Q 021484 182 --LVRLMVGDRHVVNQLEPHPH---I-----------PMFATCGIEKTVKLWAPMPTD---FPPLPDNAEKIMKANKQGR 242 (312)
Q Consensus 182 --~~~~~~~~~~~v~~~~~~p~---~-----------~~l~t~~~d~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~ 242 (312)
..+....|.-.|++++|.|. | +.|++|+.|..|+||+..... ...+.+|...+...+|.+.
T Consensus 139 w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 139 WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccc
Confidence 23445689999999999996 4 459999999999999998864 2457888888866654333
Q ss_pred ---CCceeEEecCCceEEEEEecccC------------cccee-EeecCCCccCCCCCCCeEEEee
Q 021484 243 ---EDHSRITLTPDVIMHVLRLQRRQ------------TLAYR-ERRYNAADFESDEEEGETYLLG 292 (312)
Q Consensus 243 ---~~~~l~s~~~d~~i~i~~~~~~~------------~~~~~-~~~~~~~~~~~~~~~~~v~~~~ 292 (312)
....+++++.|+.+.||...... ...|. .++..+..|+....++.|.++-
T Consensus 219 ~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 219 VGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 25688999999999999865321 11222 4455555555555555565553
No 92
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.8e-24 Score=162.96 Aligned_cols=220 Identities=15% Similarity=0.257 Sum_probs=176.7
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
-||+++|..++-.... .++.+++.|.+.+||.++++. |...+ .+|.+.|.+++|++.+.+++++
T Consensus 145 ~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Esg~--------------CL~~Y-~GH~GSVNsikfh~s~~L~lTa 208 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQ-PICGTASADHTARIWSLESGA--------------CLATY-TGHTGSVNSIKFHNSGLLLLTA 208 (481)
T ss_pred cccccceeeehhhcCC-cceeecccccceeEEeecccc--------------ceeee-cccccceeeEEeccccceEEEc
Confidence 5899999999998866 599999999999999999998 55555 8999999999999999998886
Q ss_pred -cCCcEEEEEc------CCCcCCCCCc------------------CCcccccCCCCCceEecccCCceeeEEEEecCCCC
Q 021484 107 -NDELVYLFEK------NMGLGPSPLS------------------LSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE 161 (312)
Q Consensus 107 -~d~~i~iwd~------~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~ 161 (312)
+|++..||.. .+...+...+ .......-..++..+.+|... |.+..| -..|+
T Consensus 209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~v--V~a~dW-L~gg~ 285 (481)
T KOG0300|consen 209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAV--VSACDW-LAGGQ 285 (481)
T ss_pred cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccc--eEehhh-hcCcc
Confidence 5999999983 2221111100 000001112355678888866 899998 67899
Q ss_pred EEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC--CCCCCCCChhhhhhhhc
Q 021484 162 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT--DFPPLPDNAEKIMKANK 239 (312)
Q Consensus 162 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~ 239 (312)
.+++++.|.+-.+||+.+++++..+.+|....+.++-+|..+++++.+.|-+.++||++.. .+..|.+|...+....
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~v- 364 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVV- 364 (481)
T ss_pred eeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEE-
Confidence 9999999999999999999999999999999999999999999999999999999999843 2467888888875443
Q ss_pred cCCCCceeEEecCCceEEEEEecccCcc
Q 021484 240 QGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 240 ~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
+. .+..+++++.|.++++||+++...+
T Consensus 365 F~-~dd~vVSgSDDrTvKvWdLrNMRsp 391 (481)
T KOG0300|consen 365 FN-TDDRVVSGSDDRTVKVWDLRNMRSP 391 (481)
T ss_pred Ee-cCCceeecCCCceEEEeeeccccCc
Confidence 32 3457899999999999999875433
No 93
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=2.8e-23 Score=158.56 Aligned_cols=215 Identities=16% Similarity=0.234 Sum_probs=161.0
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc--ccccccCCCccEEEEEEccCCC-eE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC--PRHLIGKNNIHITGLAYSNTSE-LL 103 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~-~l 103 (312)
..|.+.|+++...+..++++++|+.||.|.+||++....... ..--....| .+.-..+|...|.++.|-|-.. ++
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~--s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA--SGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh--ccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 459999999999998879999999999999999985431100 000011112 2222367899999999999776 66
Q ss_pred EEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC---CCCEEEEeccCceEEEEeccC
Q 021484 104 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP---NDEYVMSGSDCGHLFIWKKKG 179 (312)
Q Consensus 104 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~---~~~~l~~~~~dg~v~iwd~~~ 179 (312)
.+++ |.++++||..+. +....|+- . ..|.+-++ +| ...++++|..+-.|++.|+.+
T Consensus 118 tssSFDhtlKVWDtnTl----------------Q~a~~F~m-e--~~VYsham-Sp~a~sHcLiA~gtr~~~VrLCDi~S 177 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTL----------------QEAVDFKM-E--GKVYSHAM-SPMAMSHCLIAAGTRDVQVRLCDIAS 177 (397)
T ss_pred ecccccceEEEeecccc----------------eeeEEeec-C--ceeehhhc-ChhhhcceEEEEecCCCcEEEEeccC
Confidence 6665 999999999875 34444432 2 23666666 55 355788999999999999999
Q ss_pred CeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCC--CCCCC--------------CCChhhhhhhhccCC
Q 021484 180 GKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT--DFPPL--------------PDNAEKIMKANKQGR 242 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~--~~~~~--------------~~~~~~~~~~~~~~~ 242 (312)
|....++.+|.+.|.++.|+|...+ |++|+.||.||+||++.. +...+ +.|...+ .-.++..
T Consensus 178 Gs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv-ngla~tS 256 (397)
T KOG4283|consen 178 GSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV-NGLAWTS 256 (397)
T ss_pred CcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee-eeeeecc
Confidence 9999999999999999999999988 899999999999998743 22211 1233333 3334677
Q ss_pred CCceeEEecCCceEEEEEeccc
Q 021484 243 EDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 243 ~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
++.++.+.+.|..+++|+...+
T Consensus 257 d~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 257 DARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred cchhhhhccCccceEEeecccC
Confidence 8899999999999999997654
No 94
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=7.6e-23 Score=163.93 Aligned_cols=205 Identities=14% Similarity=0.181 Sum_probs=158.2
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s 105 (312)
.||+..|.+++|+..-.++||+|+.|.+|++||+.+++ +.. .+..|...|.+++|+|.. .+|++
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~--------------p~~-s~~~~~k~Vq~l~wh~~~p~~LLs 304 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK--------------PKS-SITHHGKKVQTLEWHPYEPSVLLS 304 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC--------------cce-ehhhcCCceeEEEecCCCceEEEe
Confidence 47999999999999877899999999999999999997 222 336789999999999976 58888
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeE
Q 021484 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLV 183 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~ 183 (312)
|+ |++|.+.|.+... ..-..++ ..+. |-.++|.......+++++.||+|+-+|+|.. +++
T Consensus 305 Gs~D~~V~l~D~R~~~---------------~s~~~wk-~~g~--VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v 366 (463)
T KOG0270|consen 305 GSYDGTVALKDCRDPS---------------NSGKEWK-FDGE--VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV 366 (463)
T ss_pred ccccceEEeeeccCcc---------------ccCceEE-eccc--eEEEEecCCCceeEEEecCCceEEeeecCCCCCce
Confidence 75 9999999998531 1222333 2223 8889994344567888999999999999865 899
Q ss_pred EEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCCCCCCCChhhh--hhhhccCCC-CceeEEecCCceEEEE
Q 021484 184 RLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPDNAEKI--MKANKQGRE-DHSRITLTPDVIMHVL 259 (312)
Q Consensus 184 ~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~l~s~~~d~~i~i~ 259 (312)
.++++|.+.|.++++++.-+. ++|++.|++|++|++..........|.-.+ +.+....++ ...++.++..+.+++|
T Consensus 367 wt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vw 446 (463)
T KOG0270|consen 367 WTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVW 446 (463)
T ss_pred eEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEe
Confidence 999999999999999987765 889999999999998876654444343322 233333343 4566677777889999
Q ss_pred Eeccc
Q 021484 260 RLQRR 264 (312)
Q Consensus 260 ~~~~~ 264 (312)
|+...
T Consensus 447 d~~~~ 451 (463)
T KOG0270|consen 447 DIFTN 451 (463)
T ss_pred ecccC
Confidence 97655
No 95
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.8e-24 Score=182.72 Aligned_cols=201 Identities=18% Similarity=0.274 Sum_probs=174.5
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
|...|.++..-... +.+++|+.|..+-+|.+..-. +... +.+|..+|.++.|++...+|+++ .
T Consensus 27 hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~kp~--------------~i~S-~~~hespIeSl~f~~~E~Llaagsa 90 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGKPN--------------AITS-LTGHESPIESLTFDTSERLLAAGSA 90 (825)
T ss_pred hhhhhceeeeeccc-eeeccCCCceeeccccccCCc--------------hhhe-eeccCCcceeeecCcchhhhccccc
Confidence 66777888774455 899999999999999987543 1112 38999999999999999888887 5
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 187 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 187 (312)
+|+|++||++.. +.++++.+|... +.++.| +|-+.|.+.|+.|+.+++||.+..-+...+.
T Consensus 91 sgtiK~wDleeA----------------k~vrtLtgh~~~--~~sv~f-~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~ 151 (825)
T KOG0267|consen 91 SGTIKVWDLEEA----------------KIVRTLTGHLLN--ITSVDF-HPYGEFFASGSTDTDLKIWDIRKKGCSHTYK 151 (825)
T ss_pred CCceeeeehhhh----------------hhhhhhhccccC--cceeee-ccceEEeccccccccceehhhhccCceeeec
Confidence 999999999987 788999999976 999999 9999999999999999999999888999999
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484 188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 188 ~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
+|...|..+.|+|+|++++.++.|.+++|||+..+++ ..|..|...+.... +++..-++.+|+.|.++++||+.+..
T Consensus 152 s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle-~hp~e~Lla~Gs~d~tv~f~dletfe 229 (825)
T KOG0267|consen 152 SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE-FHPLEVLLAPGSSDRTVRFWDLETFE 229 (825)
T ss_pred CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc-cCchhhhhccCCCCceeeeeccceeE
Confidence 9999999999999999999999999999999988885 66777777775544 77777889999999999999998653
No 96
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.1e-24 Score=184.00 Aligned_cols=191 Identities=17% Similarity=0.307 Sum_probs=159.8
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
-+|..+|.++.|++.. .+|++|+.+|+|++||+...+ ....+ .+|...+.++.|+|-+.+.+++
T Consensus 67 ~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk--------------~vrtL-tgh~~~~~sv~f~P~~~~~a~g 130 (825)
T KOG0267|consen 67 TGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAK--------------IVRTL-TGHLLNITSVDFHPYGEFFASG 130 (825)
T ss_pred eccCCcceeeecCcch-hhhcccccCCceeeeehhhhh--------------hhhhh-hccccCcceeeeccceEEeccc
Confidence 4799999999999988 899999999999999999876 23333 8899999999999999999887
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
+ |..+.+||.+.. .+...+.+|... +..+.| +|+|++++.+++|..++|||...|+.+..
T Consensus 131 Stdtd~~iwD~Rk~----------------Gc~~~~~s~~~v--v~~l~l-sP~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 131 STDTDLKIWDIRKK----------------GCSHTYKSHTRV--VDVLRL-SPDGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred cccccceehhhhcc----------------CceeeecCCcce--eEEEee-cCCCceeeccCCcceeeeecccccccccc
Confidence 4 999999999865 588889998865 899999 99999999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
|+.|.+.+..+.|+|..-.+++|+.|++|++||+++.+. .........+ ....+.+++..+.+|...
T Consensus 192 f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v-~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGV-RSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCc-eeeeecCCceeeecCchh
Confidence 999999999999999999999999999999999997653 2222222333 333355555555554444
No 97
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4e-23 Score=167.30 Aligned_cols=198 Identities=12% Similarity=0.190 Sum_probs=159.1
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~ 106 (312)
+|..+|..+.|+|++...|++|+.|+.+++||+.+.. . ..-+.+|.+.|.+.+|+|... ++++|
T Consensus 108 ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--------------v-~~~l~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 108 AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--------------V-QAELSGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--------------E-EEEecCCcceeEeeccccCCCeEEEec
Confidence 4889999999999887899999999999999999875 2 223389999999999999764 88887
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEE
Q 021484 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVR 184 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~ 184 (312)
+ ||.|++||++.. .....--.|..+ |..+.+ -|.|..+++++ ...|++||+-+| +.+.
T Consensus 173 sYDg~vrl~DtR~~----------------~~~v~elnhg~p--Ve~vl~-lpsgs~iasAg-Gn~vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSL----------------TSRVVELNHGCP--VESVLA-LPSGSLIASAG-GNSVKVWDLTTGGQLLT 232 (487)
T ss_pred CCCceEEEEEeccC----------------CceeEEecCCCc--eeeEEE-cCCCCEEEEcC-CCeEEEEEecCCceehh
Confidence 6 999999999875 222222245544 999999 78889988876 468999999854 5555
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.+..|...|+|+.+..++..|++++.|+.+++||+.+.+...--....+++.+. .++++..++.|..+|.+-+-+.
T Consensus 233 ~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsia-vs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 233 SMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIA-VSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEE-ecCCCceEEEecccceeeeehh
Confidence 555599999999999999999999999999999977766432223566776665 6778899999999998877743
No 98
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=7.1e-23 Score=157.39 Aligned_cols=231 Identities=12% Similarity=0.160 Sum_probs=167.2
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 107 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 107 (312)
.|..+|+++.|+|.. .+|++|+.|++|++||+..-.. .+.|. . .....+|.++.|+|.|.+|+.+.
T Consensus 170 DH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~sa---------KrA~K--~--~qd~~~vrsiSfHPsGefllvgT 235 (430)
T KOG0640|consen 170 DHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSA---------KRAFK--V--FQDTEPVRSISFHPSGEFLLVGT 235 (430)
T ss_pred hccCcccceeecchh-heEEeccCCCeEEEEecccHHH---------HHHHH--H--hhccceeeeEeecCCCceEEEec
Confidence 488999999999998 8999999999999999975421 11111 1 12356899999999999888874
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCc---eEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ---VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 183 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 183 (312)
-..+++||+++. ++.. .-.+|... |+++.| ++.+++.++++.||.|++||--+++++
T Consensus 236 dHp~~rlYdv~T~----------------QcfvsanPd~qht~a--i~~V~Y-s~t~~lYvTaSkDG~IklwDGVS~rCv 296 (430)
T KOG0640|consen 236 DHPTLRLYDVNTY----------------QCFVSANPDDQHTGA--ITQVRY-SSTGSLYVTASKDGAIKLWDGVSNRCV 296 (430)
T ss_pred CCCceeEEeccce----------------eEeeecCcccccccc--eeEEEe-cCCccEEEEeccCCcEEeeccccHHHH
Confidence 778999999875 2211 12345555 999999 999999999999999999998889999
Q ss_pred EEee-cCc-cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCC--hh-hhh-hhhccCCCCceeE-EecCCce
Q 021484 184 RLMV-GDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDN--AE-KIM-KANKQGREDHSRI-TLTPDVI 255 (312)
Q Consensus 184 ~~~~-~~~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~--~~-~~~-~~~~~~~~~~~l~-s~~~d~~ 255 (312)
.++. +|. ..|.+..|..+++++++.+.|..+++|.+.+++. ..+.+. .+ ... .-+.+.....+++ ---..+.
T Consensus 297 ~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~s 376 (430)
T KOG0640|consen 297 RTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNS 376 (430)
T ss_pred HHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCc
Confidence 8884 565 4788999999999999999999999999998863 333322 11 111 1111222223332 2223355
Q ss_pred EEEEEec-----------ccCccceeEeecCCCccCCCCCCCeEEEe
Q 021484 256 MHVLRLQ-----------RRQTLAYRERRYNAADFESDEEEGETYLL 291 (312)
Q Consensus 256 i~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 291 (312)
+.-||.+ ......|+.++|.+..+....++-+.-+|
T Consensus 377 lcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFW 423 (430)
T KOG0640|consen 377 LCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFW 423 (430)
T ss_pred eeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeee
Confidence 6666644 34556677888888888877777665554
No 99
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=151.39 Aligned_cols=214 Identities=14% Similarity=0.248 Sum_probs=156.0
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
.||...|++++|+.+| ..|++.+.|++|++|+++...... ...+ ..++ .-+..+.++|.||.+ ++++
T Consensus 83 KgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~e----Hr~~----R~nv---e~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKE----HRCI----RQNV---EYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred hccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhh----hhHh----hccc---cCCCceEEEECCCcceEEEE
Confidence 3899999999999999 899999999999999998643210 0001 1111 123567899999998 5555
Q ss_pred e-cCCcEEEEEcCCCcC-CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484 106 Y-NDELVYLFEKNMGLG-PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 183 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 183 (312)
. +..++++|.+..... .-......++ ....-+.|... +..+-. ...+.+|++++.|..|.+|+++ |+.+
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D-----~~~f~~kh~v~--~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~L 221 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHID-----NLEFERKHQVD--IINIGI-AGNAKYIMSASLDTKICLWDLK-GQLL 221 (420)
T ss_pred EccCCEEEEEEeeecccCCCCccccccc-----ccccchhcccc--eEEEee-cCCceEEEEecCCCcEEEEecC-Ccee
Confidence 5 588999998765421 0000001111 11111223333 666666 6788999999999999999999 9999
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC---CC------CCCCCCCChhhhhhhhccCCCCceeEEecCCc
Q 021484 184 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM---PT------DFPPLPDNAEKIMKANKQGREDHSRITLTPDV 254 (312)
Q Consensus 184 ~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 254 (312)
..+......-+..+.||+|+++++++.---|++|.+- .+ +...+.+|...+... +++++++..++.+.||
T Consensus 222 ~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~-aFsn~S~r~vtvSkDG 300 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAA-AFSNSSTRAVTVSKDG 300 (420)
T ss_pred eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeee-eeCCCcceeEEEecCC
Confidence 9888776777889999999999999999999999963 22 235567888888554 4888999999999999
Q ss_pred eEEEEEec
Q 021484 255 IMHVLRLQ 262 (312)
Q Consensus 255 ~i~i~~~~ 262 (312)
.+++||.+
T Consensus 301 ~wriwdtd 308 (420)
T KOG2096|consen 301 KWRIWDTD 308 (420)
T ss_pred cEEEeecc
Confidence 99999863
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=1.5e-23 Score=166.50 Aligned_cols=211 Identities=10% Similarity=0.137 Sum_probs=166.3
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
..++|+++.|.+++ ..+++++.|+.+++|++...++ .+.+.+|.+.|+++.|......++++ .
T Consensus 218 s~g~it~~d~d~~~-~~~iAas~d~~~r~Wnvd~~r~---------------~~TLsGHtdkVt~ak~~~~~~~vVsgs~ 281 (459)
T KOG0288|consen 218 SLGNITSIDFDSDN-KHVIAASNDKNLRLWNVDSLRL---------------RHTLSGHTDKVTAAKFKLSHSRVVSGSA 281 (459)
T ss_pred cCCCcceeeecCCC-ceEEeecCCCceeeeeccchhh---------------hhhhcccccceeeehhhccccceeeccc
Confidence 46789999999999 7888889999999999998862 23337899999999998776667776 4
Q ss_pred CCcEEEEEcCCCcC-----------------------CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE
Q 021484 108 DELVYLFEKNMGLG-----------------------PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 164 (312)
Q Consensus 108 d~~i~iwd~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~ 164 (312)
|.+|++||+.+... -++..+..|+.....+......+. .|+++.. ++++..|+
T Consensus 282 DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~l-s~~g~~lL 357 (459)
T KOG0288|consen 282 DRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDL-SMDGLELL 357 (459)
T ss_pred cchhhhhhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc---ceeeEee-ccCCeEEe
Confidence 99999999876531 122334555555556666655543 3999998 99999999
Q ss_pred EeccCceEEEEeccCCeeEEEeecC----ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC-CCC-Chhhhhhhh
Q 021484 165 SGSDCGHLFIWKKKGGKLVRLMVGD----RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-LPD-NAEKIMKAN 238 (312)
Q Consensus 165 ~~~~dg~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-~~~-~~~~~~~~~ 238 (312)
+++.|.++.+.|+++.+....+.+. ....+.+.|||++.|+++||.||.|+||++.++++.. +.. +.++.+...
T Consensus 358 sssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~ 437 (459)
T KOG0288|consen 358 SSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSL 437 (459)
T ss_pred eecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEE
Confidence 9999999999999998887777532 2347889999999999999999999999999998632 222 333245666
Q ss_pred ccCCCCceeEEecCCceEEEE
Q 021484 239 KQGREDHSRITLTPDVIMHVL 259 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~ 259 (312)
.|.+.+..+++.+.++.+.+|
T Consensus 438 ~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 438 SWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEcCCCchhhcccCCcceEec
Confidence 688899999999999999998
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.4e-22 Score=150.69 Aligned_cols=205 Identities=16% Similarity=0.215 Sum_probs=157.4
Q ss_pred CCCccceEEEEEc-C-CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--e
Q 021484 27 PMNSIRLNAIVID-P-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--L 102 (312)
Q Consensus 27 ~~h~~~v~~~~~~-p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~ 102 (312)
.||++||..++|- | .| .+||+++.||+|.||.-..++. ........|...|++++|.|.+- .
T Consensus 53 ~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g~w-------------~k~~e~~~h~~SVNsV~wapheygl~ 118 (299)
T KOG1332|consen 53 TGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENGRW-------------TKAYEHAAHSASVNSVAWAPHEYGLL 118 (299)
T ss_pred cCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCCch-------------hhhhhhhhhcccceeecccccccceE
Confidence 4799999999994 5 55 8999999999999999988864 22233367999999999999874 6
Q ss_pred EEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC---C-----------CEEEEec
Q 021484 103 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---D-----------EYVMSGS 167 (312)
Q Consensus 103 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~---~-----------~~l~~~~ 167 (312)
|+++ +||.|.|.+.+.... ....+....|... |++++| .|. | +.|++|+
T Consensus 119 LacasSDG~vsvl~~~~~g~-------------w~t~ki~~aH~~G--vnsVsw-apa~~~g~~~~~~~~~~~krlvSgG 182 (299)
T KOG1332|consen 119 LACASSDGKVSVLTYDSSGG-------------WTTSKIVFAHEIG--VNSVSW-APASAPGSLVDQGPAAKVKRLVSGG 182 (299)
T ss_pred EEEeeCCCcEEEEEEcCCCC-------------ccchhhhhccccc--cceeee-cCcCCCccccccCcccccceeeccC
Confidence 6665 699999999876410 0233455678766 999999 675 4 5699999
Q ss_pred cCceEEEEeccCCe--eEEEeecCccceEEEEEcCCC----CeEEEEeCCCcEEEccCCCC--CC-CCCCCChhhhhhhh
Q 021484 168 DCGHLFIWKKKGGK--LVRLMVGDRHVVNQLEPHPHI----PMFATCGIEKTVKLWAPMPT--DF-PPLPDNAEKIMKAN 238 (312)
Q Consensus 168 ~dg~v~iwd~~~~~--~~~~~~~~~~~v~~~~~~p~~----~~l~t~~~d~~i~iwd~~~~--~~-~~~~~~~~~~~~~~ 238 (312)
.|..|+||+...++ ...++.+|.+.|.+++|.|.- .++|+++.||++.||..+.. .. .++...-..++-..
T Consensus 183 cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~v 262 (299)
T KOG1332|consen 183 CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRV 262 (299)
T ss_pred CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEE
Confidence 99999999988753 334588999999999999975 35999999999999987632 11 22222223334445
Q ss_pred ccCCCCceeEEecCCceEEEEEe
Q 021484 239 KQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.|+..+++|.....|+.+.+|.=
T Consensus 263 SWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 263 SWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred EEeccccEEEEecCCcEEEEEEe
Confidence 57888999999999999999963
No 102
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.1e-21 Score=150.29 Aligned_cols=198 Identities=14% Similarity=0.204 Sum_probs=148.6
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccC-CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
-.+.|.+++|||....++++|+.|++||+|++.. +.. .+ .....|.++|.+++|+.+|..++++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-------------~~-ka~~~~~~PvL~v~WsddgskVf~g~ 91 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-------------VP-KAQQSHDGPVLDVCWSDDGSKVFSGG 91 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcc-------------cc-hhhhccCCCeEEEEEccCCceEEeec
Confidence 3678999999996657888999999999999986 342 22 3337789999999999999877776
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC--CEEEEeccCceEEEEeccCCeeEE
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND--EYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~--~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
.|+.+++||+.++ ....+..|..+ |..+.|. +.. +.|++|+.|.+|+.||++...++.
T Consensus 92 ~Dk~~k~wDL~S~-----------------Q~~~v~~Hd~p--vkt~~wv-~~~~~~cl~TGSWDKTlKfWD~R~~~pv~ 151 (347)
T KOG0647|consen 92 CDKQAKLWDLASG-----------------QVSQVAAHDAP--VKTCHWV-PGMNYQCLVTGSWDKTLKFWDTRSSNPVA 151 (347)
T ss_pred cCCceEEEEccCC-----------------Ceeeeeecccc--eeEEEEe-cCCCcceeEecccccceeecccCCCCeee
Confidence 6999999999986 56677788866 9999994 333 489999999999999999999998
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
++.. .++++++.. -..+++.+..++.|.+|+++... ........+....+.....+....+.|+-+|.+.+..+.
T Consensus 152 t~~L-PeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id 228 (347)
T KOG0647|consen 152 TLQL-PERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYID 228 (347)
T ss_pred eeec-cceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecC
Confidence 8874 457777654 45667888889999999997653 222322333333333334444445667777777776665
Q ss_pred c
Q 021484 263 R 263 (312)
Q Consensus 263 ~ 263 (312)
.
T Consensus 229 ~ 229 (347)
T KOG0647|consen 229 D 229 (347)
T ss_pred C
Confidence 5
No 103
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=4.3e-23 Score=154.00 Aligned_cols=233 Identities=15% Similarity=0.192 Sum_probs=188.7
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
-||++.|.....+.+. .+.|+++.|-+-++||.-++..+ .+ ..|..-|.+++|+.+.++|+++
T Consensus 56 eghkgavw~~~l~~na-~~aasaaadftakvw~a~tgdel---------hs-------f~hkhivk~~af~~ds~~lltg 118 (334)
T KOG0278|consen 56 EGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVTGDEL---------HS-------FEHKHIVKAVAFSQDSNYLLTG 118 (334)
T ss_pred eccCcceeeeecCchh-hhhhhhcccchhhhhhhhhhhhh---------hh-------hhhhheeeeEEecccchhhhcc
Confidence 4899999999999987 78899999999999999988732 11 3467779999999999999887
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
.+..++|||++... .+.+.+.+|... |..+-| -...+.+++.+.|++|++||.+++..++.
T Consensus 119 g~ekllrvfdln~p~---------------App~E~~ghtg~--Ir~v~w-c~eD~~iLSSadd~tVRLWD~rTgt~v~s 180 (334)
T KOG0278|consen 119 GQEKLLRVFDLNRPK---------------APPKEISGHTGG--IRTVLW-CHEDKCILSSADDKTVRLWDHRTGTEVQS 180 (334)
T ss_pred chHHHhhhhhccCCC---------------CCchhhcCCCCc--ceeEEE-eccCceEEeeccCCceEEEEeccCcEEEE
Confidence 59999999998763 566788899977 999999 56777788889999999999999999998
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
+. ...+|+++..+++|+++.++. .+.|++||..+..+ +.+. .+.. +..+..+|+...+++|+.|+.++.+|..++
T Consensus 181 L~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k-~P~n-V~SASL~P~k~~fVaGged~~~~kfDy~Tg 256 (334)
T KOG0278|consen 181 LE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK-MPCN-VESASLHPKKEFFVAGGEDFKVYKFDYNTG 256 (334)
T ss_pred Ee-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc-Cccc-cccccccCCCceEEecCcceEEEEEeccCC
Confidence 87 457899999999999986664 68999999988764 3222 2222 345556778899999999999999998765
Q ss_pred Cccce-----------eEeecCCCccCCCCCCCeEEEeecCCCCC
Q 021484 265 QTLAY-----------RERRYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 265 ~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
..+.. ..++|++..-+++.++|.+.+|....+.-
T Consensus 257 eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 257 EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 43322 26788888889999999998888765543
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.6e-22 Score=162.76 Aligned_cols=215 Identities=16% Similarity=0.194 Sum_probs=172.6
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecC-CCCCCCCcc-cccccccc-cCCCccEEEEEEccCCCeEE
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS-PISSDTPVD-TFCPRHLI-GKNNIHITGLAYSNTSELLI 104 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~-~~~~~~~~-~~~~~~i~~~~~~~~~~~l~ 104 (312)
.|..+|.+++++|++ .+.++++.+++|.-|++.+++... .++.+.... .+.+.... ..|...+.+++.+++|++|+
T Consensus 140 ~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred cccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 588999999999998 899999999999999999887431 111110000 11111111 37889999999999999999
Q ss_pred Eec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484 105 SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 183 (312)
Q Consensus 105 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 183 (312)
++. |..|.||+..+. +.++.+.+|.+. |.+++| -.....|++++.|+.|++|++.....+
T Consensus 219 tgg~d~~v~Iw~~~t~----------------ehv~~~~ghr~~--V~~L~f-r~gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 219 TGGRDRHVQIWDCDTL----------------EHVKVFKGHRGA--VSSLAF-RKGTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred ecCCCceEEEecCccc----------------chhhcccccccc--eeeeee-ecCccceeeeecCCceEEEehhHhHHH
Confidence 985 999999999998 788999999977 999999 667778999999999999999998889
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 184 RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 184 ~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
.++.+|...|.++.-...++.+.+|+.|+++++|++.......+.++...+ .+. ...+..-+++|+.+|.|.+|++..
T Consensus 280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~si-dcv-~~In~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSI-DCV-AFINDEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred HHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCe-eeE-EEecccceeeccCCceEEEeeecc
Confidence 999999999999998888888888889999999999665555555554333 332 223567899999999999999876
Q ss_pred c
Q 021484 264 R 264 (312)
Q Consensus 264 ~ 264 (312)
.
T Consensus 358 K 358 (479)
T KOG0299|consen 358 K 358 (479)
T ss_pred c
Confidence 5
No 105
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.8e-22 Score=160.85 Aligned_cols=209 Identities=11% Similarity=0.125 Sum_probs=168.7
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
+++|.+++-+|.| .+|+.|+..|.|++|.+.+|.+. ..+.+|-..|+++.|+.||.+|+++ .|
T Consensus 81 Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL---------------~v~~aHYQ~ITcL~fs~dgs~iiTgskD 144 (476)
T KOG0646|consen 81 PGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILL---------------NVLSAHYQSITCLKFSDDGSHIITGSKD 144 (476)
T ss_pred ccceeeeecCCCc-eEEEeecccCcEEEEEeccccHH---------------HHHHhhccceeEEEEeCCCcEEEecCCC
Confidence 6789999999999 88888889999999999999742 2238899999999999999999997 59
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC--CCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
|.|.+|.+..-..+.... ..++...|..|.-+ |+++.. .+ ...+|++++.|.++++||+..+..+.++
T Consensus 145 g~V~vW~l~~lv~a~~~~-------~~~p~~~f~~Htls--ITDl~i-g~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 145 GAVLVWLLTDLVSADNDH-------SVKPLHIFSDHTLS--ITDLQI-GSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred ccEEEEEEEeecccccCC-------CccceeeeccCcce--eEEEEe-cCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 999999986542211111 22677888889865 998876 43 3568999999999999999999988877
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-----------------CCCCCCChh-hhhhhhccCCCCceeE
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-----------------FPPLPDNAE-KIMKANKQGREDHSRI 248 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-----------------~~~~~~~~~-~~~~~~~~~~~~~~l~ 248 (312)
. ....+.+++.+|.++.+..|+.+|.|.+.++..-. ...+.+|.. ..+++...+.|+.+|+
T Consensus 215 ~-fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 215 T-FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred e-cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 6 45689999999999999999999999887754321 233445655 3457777889999999
Q ss_pred EecCCceEEEEEecccC
Q 021484 249 TLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 249 s~~~d~~i~i~~~~~~~ 265 (312)
+|+.||.+.+||+...+
T Consensus 294 SGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 294 SGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred eeCCCCCEEEEecchHH
Confidence 99999999999987653
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.2e-22 Score=167.42 Aligned_cols=206 Identities=15% Similarity=0.189 Sum_probs=160.6
Q ss_pred CccceEEEEE-cCCCCcEEEEEeCCCeEEEEEccCCee--cCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 29 NSIRLNAIVI-DPRNPNYFAVGGSDEYARVYDIRKCHW--YSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 29 h~~~v~~~~~-~p~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
|.+.|.|+++ -++. .++|+|+-|+.|.+||+.++.. .... .......+..++...|++++.++.|.++++
T Consensus 116 H~DYVkcla~~ak~~-~lvaSgGLD~~IflWDin~~~~~l~~s~------n~~t~~sl~sG~k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNN-ELVASGGLDRKIFLWDINTGTATLVASF------NNVTVNSLGSGPKDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred ccchheeeeecccCc-eeEEecCCCccEEEEEccCcchhhhhhc------cccccccCCCCCccceeeeecCCcceEEEe
Confidence 8999999999 6666 8999999999999999998731 1110 011122232488999999999999999998
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
|+ .+.+++||.++. +.+..++||... |..+.. +++|..+++++.||+|++||+...+++.
T Consensus 189 Ggtek~lr~wDprt~----------------~kimkLrGHTdN--Vr~ll~-~dDGt~~ls~sSDgtIrlWdLgqQrCl~ 249 (735)
T KOG0308|consen 189 GGTEKDLRLWDPRTC----------------KKIMKLRGHTDN--VRVLLV-NDDGTRLLSASSDGTIRLWDLGQQRCLA 249 (735)
T ss_pred cCcccceEEeccccc----------------cceeeeeccccc--eEEEEE-cCCCCeEeecCCCceEEeeeccccceee
Confidence 75 999999999998 788889999977 999998 9999999999999999999999999999
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC-CCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
++..|...|.++..+|+-.++.+|+.||.|..=|+++....+ +.....++........+. .+-..+.|+.|+-|..
T Consensus 250 T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~-~~WvtTtds~I~rW~~ 326 (735)
T KOG0308|consen 250 TYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDN-SVWVTTTDSSIKRWKL 326 (735)
T ss_pred eEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccC-CceeeeccccceecCC
Confidence 999999999999999999999999999999999998853222 222233332222111122 2245556666666653
No 107
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.90 E-value=4.1e-21 Score=144.78 Aligned_cols=196 Identities=16% Similarity=0.182 Sum_probs=148.5
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||.+.|.|+..+-+. ..+++|+.|.++++||+.++++... + ....+|..+.|+++|.+++.+
T Consensus 49 ~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~--------------~--k~~~~Vk~~~F~~~gn~~l~~ 111 (327)
T KOG0643|consen 49 DGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVETGKQLAT--------------W--KTNSPVKRVDFSFGGNLILAS 111 (327)
T ss_pred cCCCceEEEEEecCCc-ceeeeccccceeEEEEcCCCcEEEE--------------e--ecCCeeEEEeeccCCcEEEEE
Confidence 6999999999999987 8999999999999999999984322 1 225678999999999866665
Q ss_pred c------CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC
Q 021484 107 N------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 180 (312)
Q Consensus 107 ~------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~ 180 (312)
. .+.|.++|++.... +.....+...+..+... ++.+-| .|.+++|++|.+||.|.+||.+++
T Consensus 112 tD~~mg~~~~v~~fdi~~~~~---------~~~s~ep~~kI~t~~sk--it~a~W-g~l~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 112 TDKQMGYTCFVSVFDIRDDSS---------DIDSEEPYLKIPTPDSK--ITSALW-GPLGETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred ehhhcCcceEEEEEEccCChh---------hhcccCceEEecCCccc--eeeeee-cccCCEEEEecCCCcEEEEEcccC
Confidence 3 34589999984311 11111445556656544 888888 999999999999999999999998
Q ss_pred ee-EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484 181 KL-VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 181 ~~-~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
+. +..-+.|...|++++++|+..+++|++.|.+-++||..+.++ +++. ...+ +..+...|-...++.++..
T Consensus 180 ~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~P-vN~aaisP~~d~VilgGGq 252 (327)
T KOG0643|consen 180 KELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERP-VNTAAISPLLDHVILGGGQ 252 (327)
T ss_pred ceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccc-ccceecccccceEEecCCc
Confidence 54 555578999999999999999999999999999999988764 3332 2222 3444455544445544443
No 108
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.6e-22 Score=156.03 Aligned_cols=215 Identities=13% Similarity=0.188 Sum_probs=160.0
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEcc------CCeecCCCC--------------------CCCCccccc
Q 021484 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR------KCHWYSPIS--------------------SDTPVDTFC 79 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~------~~~~~~~~~--------------------~~~~~~~~~ 79 (312)
|-||.+.|++++|++.+ .++++++.|++..||... ...-..... .+.+... .
T Consensus 186 Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR-v 263 (481)
T KOG0300|consen 186 YTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR-V 263 (481)
T ss_pred ecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee-e
Confidence 35799999999999998 899999999999999832 100000000 0000000 1
Q ss_pred ccccccCCCccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484 80 PRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 158 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~ 158 (312)
+...+.+|...|.+..|-..|+.+++++ |.+..+||++++ ..+..+.||... ++.++- +|
T Consensus 264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg----------------e~v~~LtGHd~E--LtHcst-Hp 324 (481)
T KOG0300|consen 264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG----------------EVVNILTGHDSE--LTHCST-HP 324 (481)
T ss_pred eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC----------------ceeccccCcchh--cccccc-CC
Confidence 2223378999999999999999899876 999999999998 899999999977 888887 89
Q ss_pred CCCEEEEeccCceEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhh
Q 021484 159 NDEYVMSGSDCGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIM 235 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~ 235 (312)
..+++++.+.|.+.++||++.. +.+..|++|...|+++.|..+ ..+++|+.|.+|++||++... +.++. .....
T Consensus 325 tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~ 401 (481)
T KOG0300|consen 325 TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPA 401 (481)
T ss_pred cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee--cCCcc
Confidence 9999999999999999999853 457788999999999999866 457799999999999998765 23332 22222
Q ss_pred hhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 236 KANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.....+.....++.--.+..+++||++..
T Consensus 402 NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 402 NRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred ceeEeecCCceEEeccCCceEEEEecCCC
Confidence 23333443444444445578999998654
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=3.6e-22 Score=168.21 Aligned_cols=227 Identities=16% Similarity=0.257 Sum_probs=181.7
Q ss_pred CccceEE-EEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec
Q 021484 29 NSIRLNA-IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN 107 (312)
Q Consensus 29 h~~~v~~-~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~ 107 (312)
|.+-|.. +++-+...-.+++|+.|++|.+|.+.... +...+.+|...|.++....++. +++++
T Consensus 56 ~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~---------------P~~~LkgH~snVC~ls~~~~~~-~iSgS 119 (745)
T KOG0301|consen 56 PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE---------------PLYTLKGHKSNVCSLSIGEDGT-LISGS 119 (745)
T ss_pred CcceeeccceeccccCcceEeecccceEEEEecCCCC---------------chhhhhccccceeeeecCCcCc-eEecc
Confidence 3444554 77776332479999999999999998764 4444599999999998877777 67765
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
|.++++|... ++...+.+|... |..++. -|++ .+++|+.|.+|++|.- ++.++++
T Consensus 120 WD~TakvW~~~------------------~l~~~l~gH~as--VWAv~~-l~e~-~~vTgsaDKtIklWk~--~~~l~tf 175 (745)
T KOG0301|consen 120 WDSTAKVWRIG------------------ELVYSLQGHTAS--VWAVAS-LPEN-TYVTGSADKTIKLWKG--GTLLKTF 175 (745)
T ss_pred cccceEEecch------------------hhhcccCCcchh--eeeeee-cCCC-cEEeccCcceeeeccC--Cchhhhh
Confidence 9999999876 466678999977 999987 4555 8899999999999975 7889999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc---
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR--- 263 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~--- 263 (312)
.+|+..|..+++-|++ .|++++.||.|++|++.+..+..+.+|.+-++... ...++..+++.+.|++++||+...
T Consensus 176 ~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis-~~~~~~~Ivs~gEDrtlriW~~~e~~q 253 (745)
T KOG0301|consen 176 SGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSIS-MALSDGLIVSTGEDRTLRIWKKDECVQ 253 (745)
T ss_pred ccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEE-ecCCCCeEEEecCCceEEEeecCceEE
Confidence 9999999999998874 57799999999999998888899999999886655 456788999999999999998542
Q ss_pred ----cCccceeEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484 264 ----RQTLAYRERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 264 ----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
+...+|....-...++..+..+|+|+++-.+..-
T Consensus 254 ~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred EEecCccceEEEEEeeCCCEEEeccCceEEEEEecccc
Confidence 2233444334456788888999999999876443
No 110
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.89 E-value=2e-23 Score=165.82 Aligned_cols=235 Identities=14% Similarity=0.212 Sum_probs=188.9
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 106 (312)
.|.+.+..+.|-++. ..|++|+.|..|++|+....+. .....+.+..++|+.+.|.++++.+++ +
T Consensus 173 ~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~k~-------------~~~~tLaGs~g~it~~d~d~~~~~~iAas 238 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGEKS-------------ELISTLAGSLGNITSIDFDSDNKHVIAAS 238 (459)
T ss_pred ccccccceeEEccCc-chhhhcchhhhhhhhhcccchh-------------hhhhhhhccCCCcceeeecCCCceEEeec
Confidence 588999999999986 6999999999999999986652 122233666788999999999985555 5
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.|+.+++|++... +...++.+|... |+++.| ......+++|+.|.+|+.||+....+.+++
T Consensus 239 ~d~~~r~Wnvd~~----------------r~~~TLsGHtdk--Vt~ak~-~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~ 299 (459)
T KOG0288|consen 239 NDKNLRLWNVDSL----------------RLRHTLSGHTDK--VTAAKF-KLSHSRVVSGSADRTIKLWDLQKAYCSKTV 299 (459)
T ss_pred CCCceeeeeccch----------------hhhhhhcccccc--eeeehh-hccccceeeccccchhhhhhhhhhheeccc
Confidence 7999999999988 788999999977 999999 666666999999999999999988887766
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
. ....+.++..+ ...++++..|++||+||.++... ..++.+. .+.....+.++..+++.+.|.++.+.|++..+
T Consensus 300 l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e 374 (459)
T KOG0288|consen 300 L-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE 374 (459)
T ss_pred c-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeeccccc
Confidence 4 23456667665 56688999999999999998875 3443232 34555677888899999999999999987643
Q ss_pred cc--------------ceeEeecCCCccCCCCCCCeEEEeecCCCCCCC
Q 021484 266 TL--------------AYRERRYNAADFESDEEEGETYLLGFSDSDASS 300 (312)
Q Consensus 266 ~~--------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 300 (312)
.. ....++|+..+++.+..+|+||+|+...+..+.
T Consensus 375 I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 375 IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred EEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence 22 223789999999999999999999988776443
No 111
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=8e-23 Score=166.41 Aligned_cols=222 Identities=11% Similarity=0.109 Sum_probs=176.3
Q ss_pred CeeecccCccc-eeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021484 1 MWQFDLRSDSA-TRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 1 v~~wd~~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 79 (312)
|+|||+..+.. .++-.+.... ....|.++...|++ +.|++|+.-.++.|||+..-...
T Consensus 442 VKVWdis~pg~k~PvsqLdcl~-------rdnyiRSckL~pdg-rtLivGGeastlsiWDLAapTpr------------- 500 (705)
T KOG0639|consen 442 VKVWDISQPGNKSPVSQLDCLN-------RDNYIRSCKLLPDG-RTLIVGGEASTLSIWDLAAPTPR------------- 500 (705)
T ss_pred EEEeeccCCCCCCccccccccC-------cccceeeeEecCCC-ceEEeccccceeeeeeccCCCcc-------------
Confidence 68999975432 2232222221 24569999999999 89999999999999999865421
Q ss_pred ccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484 80 PRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 158 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~ 158 (312)
.+.-+........+++.+||.++.+++ +||.|.|||+.+. ..++.|++|.+. +.|+.. ++
T Consensus 501 ikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----------------~~VrqfqGhtDG--ascIdi-s~ 561 (705)
T KOG0639|consen 501 IKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----------------TLVRQFQGHTDG--ASCIDI-SK 561 (705)
T ss_pred hhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----------------eeeecccCCCCC--ceeEEe-cC
Confidence 111113334567889999999977775 8999999999987 789999999988 999998 99
Q ss_pred CCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhh
Q 021484 159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKAN 238 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 238 (312)
+|..|.+|+-|.+|+.||+++++.+.... ....|.++-.+|++.+++.|-+++.+-|-.....+...+..|..-++. .
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLS-l 639 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLS-L 639 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEE-E
Confidence 99999999999999999999987665433 457899999999999999999999999998887777777666666644 4
Q ss_pred ccCCCCceeEEecCCceEEEEEeccc
Q 021484 239 KQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.+..-+.++++.+.|..+..|+..-+
T Consensus 640 KFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred EecccCceeeecCchhhhhhccCccc
Confidence 57778999999999999999986554
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.4e-22 Score=153.20 Aligned_cols=195 Identities=14% Similarity=0.220 Sum_probs=146.2
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCC-CcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRN-PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 79 (312)
|+|||+++.+....+.. |.+.|+++.|.+.- ..-|++|+.||.|.+|+..... +
T Consensus 65 I~IYDm~k~~qlg~ll~-----------HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~--------------~ 119 (362)
T KOG0294|consen 65 IHIYDMRKRKQLGILLS-----------HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE--------------L 119 (362)
T ss_pred EEEEeccchhhhcceec-----------cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE--------------E
Confidence 57888887776666554 78899999998854 1379999999999999999876 3
Q ss_pred ccccccCCCccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCcCCCCCcCCc------ccccC-------CCCCceE----
Q 021484 80 PRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSP------EDLQK-------REEPQVY---- 141 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~-------~~~~~~~---- 141 (312)
...+ .+|...|+.++.+|.+++..+ +.|+.++.||+-.++......+.. |..+. ...+-.+
T Consensus 120 ~~sl-K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~ 198 (362)
T KOG0294|consen 120 LKSL-KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDN 198 (362)
T ss_pred eeee-cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEeccc
Confidence 3333 899999999999999997776 689999999998776332222111 11000 0001111
Q ss_pred ----ecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEE--cCCCCeEEEEeCCCcEE
Q 021484 142 ----SGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP--HPHIPMFATCGIEKTVK 215 (312)
Q Consensus 142 ----~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~--~p~~~~l~t~~~d~~i~ 215 (312)
..-..+..+.++.| .++..|++|.+++.|.+||.++..+...+.+|..+|.++.+ .|.+.+|+|+|.||.|+
T Consensus 199 A~v~~~i~~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~ 276 (362)
T KOG0294|consen 199 ASVFREIENPKRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIK 276 (362)
T ss_pred HhHhhhhhccccceeeee--cCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEE
Confidence 11111122666766 57889999999999999999999999999999999999984 56788899999999999
Q ss_pred EccCCCCC
Q 021484 216 LWAPMPTD 223 (312)
Q Consensus 216 iwd~~~~~ 223 (312)
|||++...
T Consensus 277 vWd~~~~~ 284 (362)
T KOG0294|consen 277 VWDIDMET 284 (362)
T ss_pred EEEccccc
Confidence 99998763
No 113
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=3.6e-21 Score=144.59 Aligned_cols=235 Identities=10% Similarity=0.128 Sum_probs=183.3
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
.+|...|.+++|+.+| ..|++|+.|+++++|++...+. .......+|.+.|-.++|+|... .+++
T Consensus 17 ~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r~-------------~~~~~~~gh~~svdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDRF-------------RKELVYRGHTDSVDQLCWDPKHPDLFAT 82 (313)
T ss_pred hhhhhcceEEEEcccC-ceeeecccCCceEEEEecchhh-------------hhhhcccCCCcchhhheeCCCCCcceEE
Confidence 4688999999999999 8999999999999999986652 22223378899999999999764 6666
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
+ +|.+|++||++.+ ++.......... + -+.| +|+|+++++++.|..|.+.|.++.+.+.
T Consensus 83 as~dk~ir~wd~r~~----------------k~~~~i~~~~en--i-~i~w-sp~g~~~~~~~kdD~it~id~r~~~~~~ 142 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSG----------------KCTARIETKGEN--I-NITW-SPDGEYIAVGNKDDRITFIDARTYKIVN 142 (313)
T ss_pred ecCCceEEEEEeccC----------------cEEEEeeccCcc--e-EEEE-cCCCCEEEEecCcccEEEEEecccceee
Confidence 5 6999999999988 677766655433 3 4567 8999999999999999999999888776
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
..+ ...-+..++|+-++.+++.....|+|.|......+ +.++..|....+ +..+.++++++++|+.|..+.+||+..
T Consensus 143 ~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCi-cI~f~p~GryfA~GsADAlvSLWD~~E 220 (313)
T KOG1407|consen 143 EEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCI-CIEFDPDGRYFATGSADALVSLWDVDE 220 (313)
T ss_pred hhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceE-EEEECCCCceEeeccccceeeccChhH
Confidence 655 33467789999888886666668999999877665 467777776553 445789999999999999999999765
Q ss_pred cC---------ccce-eEeecCCCccCCCCCCCeEEEeecCCCC
Q 021484 264 RQ---------TLAY-RERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 264 ~~---------~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
-- -++. ..++.++.++++..++-.|-+..+..|+
T Consensus 221 LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 221 LICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred hhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCC
Confidence 21 1122 2788899999998888555555555554
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=5.4e-21 Score=154.04 Aligned_cols=199 Identities=13% Similarity=0.188 Sum_probs=158.1
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 106 (312)
+|...+.+++.+|++ ++|++|+.|..|.||+.++.+. + ..+.+|.+.|.+++|-.....|.+ +
T Consensus 200 ~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t~eh---------v------~~~~ghr~~V~~L~fr~gt~~lys~s 263 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDTLEH---------V------KVFKGHRGAVSSLAFRKGTSELYSAS 263 (479)
T ss_pred cccceeEEEEEcCCC-cEEEecCCCceEEEecCcccch---------h------hcccccccceeeeeeecCccceeeee
Confidence 699999999999999 8999999999999999999862 2 223899999999999887765555 5
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.|+.+++|++... ..+.++.+|... |.++.- ..-++.+.+|+.|+++++|++. -+....+
T Consensus 264 ~Drsvkvw~~~~~----------------s~vetlyGHqd~--v~~Ida-L~reR~vtVGgrDrT~rlwKi~-eesqlif 323 (479)
T KOG0299|consen 264 ADRSVKVWSIDQL----------------SYVETLYGHQDG--VLGIDA-LSRERCVTVGGRDRTVRLWKIP-EESQLIF 323 (479)
T ss_pred cCCceEEEehhHh----------------HHHHHHhCCccc--eeeech-hcccceEEeccccceeEEEecc-ccceeee
Confidence 6999999999876 677888999977 999987 5567777777899999999994 3444567
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC-CCC-CCh--------h---hhhhhhccCCCCceeEEecCC
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLP-DNA--------E---KIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~-~~~--------~---~~~~~~~~~~~~~~l~s~~~d 253 (312)
.+|.+.+-+++|-.+ ..|++|+.+|.|.+|++...++. +.. .|. + ++ ......+...++++++.+
T Consensus 324 rg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wi-tsla~i~~sdL~asGS~~ 401 (479)
T KOG0299|consen 324 RGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWI-TSLAVIPGSDLLASGSWS 401 (479)
T ss_pred eCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccce-eeeEecccCceEEecCCC
Confidence 788889999998654 67889999999999998876531 111 010 0 12 223345578899999999
Q ss_pred ceEEEEEeccc
Q 021484 254 VIMHVLRLQRR 264 (312)
Q Consensus 254 ~~i~i~~~~~~ 264 (312)
|.+++|-+..+
T Consensus 402 G~vrLW~i~~g 412 (479)
T KOG0299|consen 402 GCVRLWKIEDG 412 (479)
T ss_pred CceEEEEecCC
Confidence 99999988765
No 115
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=8.5e-21 Score=150.30 Aligned_cols=210 Identities=15% Similarity=0.150 Sum_probs=160.5
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
-||+++|..++|+|.+.+.||+|+.|.+|.||.+....+..... .+...+.+|...|..++|+|... .|++
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt--------epvv~L~gH~rrVg~V~wHPtA~NVLls 149 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT--------EPVVELYGHQRRVGLVQWHPTAPNVLLS 149 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc--------cceEEEeecceeEEEEeecccchhhHhh
Confidence 38999999999999888999999999999999998765432211 22333489999999999999875 6666
Q ss_pred -ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484 106 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 106 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
+.|.+|.+||+.++ +.+..+. |... |.+++| +.+|.+|++.+.|..|+|||.++++.+.
T Consensus 150 ag~Dn~v~iWnv~tg----------------eali~l~-hpd~--i~S~sf-n~dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTG----------------EALITLD-HPDM--VYSMSF-NRDGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred ccCCceEEEEeccCC----------------ceeeecC-CCCe--EEEEEe-ccCCceeeeecccceeEEEcCCCCcEee
Confidence 57999999999998 5666665 7755 999999 9999999999999999999999999999
Q ss_pred EeecCcc-ceEEEEEcCCCCeEEEEe---CCCcEEEccCCCCC-CCCCC--CChhhhhhhhccCCCCce-eEEecCCceE
Q 021484 185 LMVGDRH-VVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTD-FPPLP--DNAEKIMKANKQGREDHS-RITLTPDVIM 256 (312)
Q Consensus 185 ~~~~~~~-~v~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~-l~s~~~d~~i 256 (312)
.-.+|.+ ....+.|-.++..+.||- .+..+-+||....+ ...+. ...+.++- -.+.++..+ .+.|-.|+.|
T Consensus 210 e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~-PFyD~dt~ivYl~GKGD~~I 288 (472)
T KOG0303|consen 210 EGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLL-PFYDPDTSIVYLCGKGDSSI 288 (472)
T ss_pred ecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEE-eeecCCCCEEEEEecCCcce
Confidence 8888874 455677888988555553 57899999987654 22111 23333422 224455444 4566678999
Q ss_pred EEEEecccC
Q 021484 257 HVLRLQRRQ 265 (312)
Q Consensus 257 ~i~~~~~~~ 265 (312)
|-+.+....
T Consensus 289 RYyEit~d~ 297 (472)
T KOG0303|consen 289 RYFEITNEP 297 (472)
T ss_pred EEEEecCCC
Confidence 999987653
No 116
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=7.5e-20 Score=158.88 Aligned_cols=232 Identities=13% Similarity=0.172 Sum_probs=185.0
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.|..+.+.++|.|+| +.|++++.||.|++|+.....- .+..+ ..+...|.+++.... +|+++
T Consensus 11 aht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~e-------------~P~ti-~~~g~~v~~ia~~s~--~f~~~s 73 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDEE-------------EPETI-DISGELVSSIACYSN--HFLTGS 73 (933)
T ss_pred hccCceEEEEEcCCC-CEEEEecCCCceEEeecCCccc-------------CCchh-hccCceeEEEeeccc--ceEEee
Confidence 388899999999999 7999999999999999876520 22222 336777888776443 55554
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.+++|.+|.+.++ ..-..+....-+ +++++| +.+|++++.|+.|-.|++.++.+......+
T Consensus 74 ~~~tv~~y~fps~----------------~~~~iL~Rftlp--~r~~~v-~g~g~~iaagsdD~~vK~~~~~D~s~~~~l 134 (933)
T KOG1274|consen 74 EQNTVLRYKFPSG----------------EEDTILARFTLP--IRDLAV-SGSGKMIAAGSDDTAVKLLNLDDSSQEKVL 134 (933)
T ss_pred ccceEEEeeCCCC----------------Cccceeeeeecc--ceEEEE-ecCCcEEEeecCceeEEEEeccccchheee
Confidence 6999999999876 333333333433 889999 899999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCC-------ChhhhhhhhccCCCCceeEEecCCceEEE
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-------NAEKIMKANKQGREDHSRITLTPDVIMHV 258 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 258 (312)
++|.++|.++.|+|.+.+||+.+-||.|++|+++.+.+ .++.+ ....++....|++++..++..+.|+.|++
T Consensus 135 rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkv 214 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKV 214 (933)
T ss_pred cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEE
Confidence 99999999999999999999999999999999998764 33321 12455666778999888899999999999
Q ss_pred EEeccc------------CccceeEeecCCCccCCCCCCCeEEEeecCC
Q 021484 259 LRLQRR------------QTLAYRERRYNAADFESDEEEGETYLLGFSD 295 (312)
Q Consensus 259 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 295 (312)
++...- .......++|.+.+++...-++.|.+||.+.
T Consensus 215 y~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 215 YSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 874321 1233448999999999999999999999875
No 117
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=7e-21 Score=149.92 Aligned_cols=222 Identities=18% Similarity=0.199 Sum_probs=159.8
Q ss_pred CCCccceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCC-eecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eE
Q 021484 27 PMNSIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LL 103 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l 103 (312)
.+|.+.++.+.-++.+. .+.++=+..|.|+||++... +.........+...+.+.....+|...=+.|.|||--. .|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 35788888888877642 35555688999999998632 11111111111122233333478888899999999443 56
Q ss_pred EEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccCCe
Q 021484 104 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGK 181 (312)
Q Consensus 104 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~~~ 181 (312)
++|. -+.|++|...++. |.+. ...|.+|... |-.++| +|. ...|++|+.||.|+|||++.+.
T Consensus 228 lsGDc~~~I~lw~~~~g~---------W~vd----~~Pf~gH~~S--VEDLqW-SptE~~vfaScS~DgsIrIWDiRs~~ 291 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGS---------WKVD----QRPFTGHTKS--VEDLQW-SPTEDGVFASCSCDGSIRIWDIRSGP 291 (440)
T ss_pred ccCccccceEeeeeccCc---------eeec----Cccccccccc--hhhhcc-CCccCceEEeeecCceEEEEEecCCC
Confidence 7774 8899999987752 2111 2345678866 999999 665 5678999999999999999872
Q ss_pred --eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC----CCCCCChhhhhhhhccCCCCceeEEecCCce
Q 021484 182 --LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF----PPLPDNAEKIMKANKQGREDHSRITLTPDVI 255 (312)
Q Consensus 182 --~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 255 (312)
.....++|.+.|+.+.|+....+||+|+.||+++|||++..+. ..+.-|..++....|...+...+++++.|.+
T Consensus 292 ~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Q 371 (440)
T KOG0302|consen 292 KKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQ 371 (440)
T ss_pred ccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCc
Confidence 2223388999999999999989999999999999999987654 3566566666554443347888899999999
Q ss_pred EEEEEeccc
Q 021484 256 MHVLRLQRR 264 (312)
Q Consensus 256 i~i~~~~~~ 264 (312)
+.+||+.-.
T Consensus 372 itiWDlsvE 380 (440)
T KOG0302|consen 372 ITIWDLSVE 380 (440)
T ss_pred EEEEEeecc
Confidence 999998643
No 118
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=7.8e-21 Score=153.06 Aligned_cols=204 Identities=14% Similarity=0.181 Sum_probs=155.3
Q ss_pred CccceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eEEE
Q 021484 29 NSIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS 105 (312)
Q Consensus 29 h~~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s 105 (312)
|..+|++++|+|... .++|+|..-|.|-+||+.+.+.. . ....+...|..+|.+|.|+|... ++.+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d--------~---d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD--------K---DGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc--------c---CceEEeccCCccccceEecCCChhheeee
Confidence 678999999999876 68999999999999999743311 0 12223378999999999999774 5555
Q ss_pred ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee-EE
Q 021484 106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL-VR 184 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~-~~ 184 (312)
+.||+|++-|+++. ..-..+........+.++.| +.+...++.+..=|.+.+||++++.. ..
T Consensus 254 SyDGtiR~~D~~~~----------------i~e~v~s~~~d~~~fs~~d~-~~e~~~vl~~~~~G~f~~iD~R~~~s~~~ 316 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGN----------------ISEEVLSLDTDNIWFSSLDF-SAESRSVLFGDNVGNFNVIDLRTDGSEYE 316 (498)
T ss_pred ccCceeeeeeecch----------------hhHHHhhcCccceeeeeccc-cCCCccEEEeecccceEEEEeecCCccch
Confidence 67999999999876 22222222222234777887 66777777777777999999998665 56
Q ss_pred EeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC-----CCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021484 185 LMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 258 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 258 (312)
.+..|...|.+|+++|..++ |||+|.|++.+|||++.-.. .....|...+ ..+.+++.+..|++.+.|..|+|
T Consensus 317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV-~sAyFSPs~gtl~TT~~D~~IRv 395 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV-NSAYFSPSGGTLLTTCQDNEIRV 395 (498)
T ss_pred hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccccee-eeeEEcCCCCceEeeccCCceEE
Confidence 66778889999999999877 99999999999999886432 1222355544 77778887777999999999999
Q ss_pred EEe
Q 021484 259 LRL 261 (312)
Q Consensus 259 ~~~ 261 (312)
||.
T Consensus 396 ~ds 398 (498)
T KOG4328|consen 396 FDS 398 (498)
T ss_pred eec
Confidence 997
No 119
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.4e-20 Score=144.16 Aligned_cols=204 Identities=13% Similarity=0.170 Sum_probs=144.4
Q ss_pred CeeecccCc-cceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021484 1 MWQFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 1 v~~wd~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 79 (312)
||+|+++.. ...+ +... .|.++|.+++|+.+| ..+++|+.|+.+++||+.+++..
T Consensus 52 VR~wevq~~g~~~~----ka~~------~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S~Q~~------------- 107 (347)
T KOG0647|consen 52 VRIWEVQNSGQLVP----KAQQ------SHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLASGQVS------------- 107 (347)
T ss_pred eEEEEEecCCcccc----hhhh------ccCCCeEEEEEccCC-ceEEeeccCCceEEEEccCCCee-------------
Confidence 678888753 2222 1111 278999999999999 89999999999999999999732
Q ss_pred ccccccCCCccEEEEEEccCCC--eEEEec-CCcEEEEEcCCCcCCCCCcCCccc-----------------------cc
Q 021484 80 PRHLIGKNNIHITGLAYSNTSE--LLISYN-DELVYLFEKNMGLGPSPLSLSPED-----------------------LQ 133 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~--~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~-----------------------~~ 133 (312)
.+ ..|..+|..+.|-+... .|++++ |++|+.||.+....-....++..- +.
T Consensus 108 --~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 108 --QV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred --ee-eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcC
Confidence 22 78999999999988775 888987 999999999875421111221111 11
Q ss_pred CCCCCceEecccCC--ceeeEEEEecCCCCEEEEeccCceEEEEeccCC--eeEEEeecCcc---------ceEEEEEcC
Q 021484 134 KREEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KLVRLMVGDRH---------VVNQLEPHP 200 (312)
Q Consensus 134 ~~~~~~~~~~~~~~--~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~---------~v~~~~~~p 200 (312)
. ....++.+..+ -.+++|+. -.+.+-.+.|+-+|++.|..+..+ +.-..++.|.. .|++++|+|
T Consensus 185 n--~~te~k~~~SpLk~Q~R~va~-f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 185 N--PPTEFKRIESPLKWQTRCVAC-FQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred C--CcchhhhhcCcccceeeEEEE-EecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence 1 01111111111 12788888 567776799999999999998876 44456666652 578899999
Q ss_pred CCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhh
Q 021484 201 HIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKI 234 (312)
Q Consensus 201 ~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~ 234 (312)
....|+|++.||++.+||-.... +.+.+.+..++
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPI 296 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCcc
Confidence 99999999999999999977653 55555555555
No 120
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=3.5e-20 Score=141.74 Aligned_cols=257 Identities=18% Similarity=0.246 Sum_probs=170.8
Q ss_pred CeeecccCcc--ceeeEEecccccCCcC--CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcc
Q 021484 1 MWQFDLRSDS--ATRLFYCSSFSENSKQ--PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD 76 (312)
Q Consensus 1 v~~wd~~~~~--~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 76 (312)
|-|||++... ...-+.++......++ -+|+-.|.++.|-|-..-+|.+++.|.++++||..+.+.. .
T Consensus 68 i~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a---------~ 138 (397)
T KOG4283|consen 68 IAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA---------V 138 (397)
T ss_pred EEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceee---------E
Confidence 4588886433 2222222222212222 3689999999999955469999999999999999988732 1
Q ss_pred cccccccccCCCccEEEEEEccCC---CeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeE
Q 021484 77 TFCPRHLIGKNNIHITGLAYSNTS---ELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKG 152 (312)
Q Consensus 77 ~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 152 (312)
.| .-.+.|.+-+++|-. .++|++ .+-+|++.|+.++ .....+.||... |.+
T Consensus 139 ~F-------~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----------------s~sH~LsGHr~~--vla 193 (397)
T KOG4283|consen 139 DF-------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----------------SFSHTLSGHRDG--VLA 193 (397)
T ss_pred Ee-------ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----------------cceeeeccccCc--eEE
Confidence 11 125667777888844 266666 5889999999998 788999999987 999
Q ss_pred EEEecCCCCE-EEEeccCceEEEEeccCC-eeEEE--------------eecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484 153 VNFFGPNDEY-VMSGSDCGHLFIWKKKGG-KLVRL--------------MVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 153 v~~~s~~~~~-l~~~~~dg~v~iwd~~~~-~~~~~--------------~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~i 216 (312)
+.| +|...+ |++|+.||.|++||++.. -+... -..|.+.|..++|..++.++++++.|..+++
T Consensus 194 V~W-sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 194 VEW-SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred EEe-ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 999 787665 689999999999998743 22222 2357788999999999999999999999999
Q ss_pred ccCCCCCC--CCCCC--C-hhhhhhhhccCC-----------CCceeEEecCCceEEEEEecccCccceeEeecCCCccC
Q 021484 217 WAPMPTDF--PPLPD--N-AEKIMKANKQGR-----------EDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFE 280 (312)
Q Consensus 217 wd~~~~~~--~~~~~--~-~~~~~~~~~~~~-----------~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~ 280 (312)
|+...++- ..+.. + ...-+.....+. ++-.+++......|++|+.. ........+.++.+...
T Consensus 273 wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h-~k~i~c~~~~~~fq~~~ 351 (397)
T KOG4283|consen 273 WNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH-LKRINCAAYRPDFEQCF 351 (397)
T ss_pred eecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecc-cceeeEEeecCchhhhh
Confidence 99887642 21110 0 000001100111 22344455555666666654 22222225566666666
Q ss_pred CCCCCCeEEEeec
Q 021484 281 SDEEEGETYLLGF 293 (312)
Q Consensus 281 ~~~~~~~v~~~~~ 293 (312)
+++-++.+|.+-.
T Consensus 352 tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 352 TGDMNGNIYMWSP 364 (397)
T ss_pred ccccCCccccccc
Confidence 6766666766643
No 121
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=8.6e-21 Score=159.98 Aligned_cols=191 Identities=16% Similarity=0.236 Sum_probs=152.6
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||...|.+++...++ .+++||.|.++++|...... .. +.+|+..|++++.-|++.++..+
T Consensus 98 kgH~snVC~ls~~~~~--~~iSgSWD~TakvW~~~~l~----------------~~-l~gH~asVWAv~~l~e~~~vTgs 158 (745)
T KOG0301|consen 98 KGHKSNVCSLSIGEDG--TLISGSWDSTAKVWRIGELV----------------YS-LQGHTASVWAVASLPENTYVTGS 158 (745)
T ss_pred hccccceeeeecCCcC--ceEecccccceEEecchhhh----------------cc-cCCcchheeeeeecCCCcEEecc
Confidence 5899999999988776 39999999999999876432 22 38999999999999998655556
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.|.+|++|.-. +.+++|.+|.+- |+.+++ - ++.-+++++.||.|+.|++ +++++..+
T Consensus 159 aDKtIklWk~~------------------~~l~tf~gHtD~--VRgL~v-l-~~~~flScsNDg~Ir~w~~-~ge~l~~~ 215 (745)
T KOG0301|consen 159 ADKTIKLWKGG------------------TLLKTFSGHTDC--VRGLAV-L-DDSHFLSCSNDGSIRLWDL-DGEVLLEM 215 (745)
T ss_pred CcceeeeccCC------------------chhhhhccchhh--eeeeEE-e-cCCCeEeecCCceEEEEec-cCceeeee
Confidence 79999999863 688999999966 999998 3 4445789999999999999 69999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
.+|+.-|++++..+++..++++++|++++||+.. .....+.-....+.... ...+.-++++++||.+|||...
T Consensus 216 ~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lPttsiWsa~--~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 216 HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLPTTSIWSAK--VLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred eccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecCccceEEEE--EeeCCCEEEeccCceEEEEEec
Confidence 9999999999988888999999999999999977 22222221111222111 1134568899999999999865
No 122
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=4.2e-20 Score=155.47 Aligned_cols=202 Identities=12% Similarity=0.154 Sum_probs=155.9
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
+.+|.++||+.+. +.||.+-.||.|.+|++...= ++...+..+....|.+++|++.++++.++.+|
T Consensus 25 Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w-------------~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg 90 (691)
T KOG2048|consen 25 PSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNW-------------FLEPVIHGPEDRSIESLAWAEGGRLFSSGLSG 90 (691)
T ss_pred ccceEEEEEeccC-CceeeeccCCcEEEEccCCCc-------------eeeEEEecCCCCceeeEEEccCCeEEeecCCc
Confidence 7789999999988 789999999999999998642 23334434556789999999777777777899
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE--Eee
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--LMV 187 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~ 187 (312)
.|.-||+.+. +....+....+. |.+++. +|.+..++.|++||.++.++..+++... .+.
T Consensus 91 ~i~EwDl~~l----------------k~~~~~d~~gg~--IWsiai-~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~ 151 (691)
T KOG2048|consen 91 SITEWDLHTL----------------KQKYNIDSNGGA--IWSIAI-NPENTILAIGCDDGVLYDFSIGPDKITYKRSLM 151 (691)
T ss_pred eEEEEecccC----------------ceeEEecCCCcc--eeEEEe-CCccceEEeecCCceEEEEecCCceEEEEeecc
Confidence 9999999887 666666655544 999998 9999999999999988888887776543 344
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC-----CCCChhhhhhhhccC---CCCceeEEecCCceEEEE
Q 021484 188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-----LPDNAEKIMKANKQG---REDHSRITLTPDVIMHVL 259 (312)
Q Consensus 188 ~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~l~s~~~d~~i~i~ 259 (312)
..+++|.+++|+|++..+++|+.||.|++||..++.-.. +....+.--.+. |+ .....+++|...|.+++|
T Consensus 152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iV-WSv~~Lrd~tI~sgDS~G~V~FW 230 (691)
T KOG2048|consen 152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIV-WSVLFLRDSTIASGDSAGTVTFW 230 (691)
T ss_pred cccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEE-EEEEEeecCcEEEecCCceEEEE
Confidence 456899999999999999999999999999998775211 111111011111 22 145689999999999999
Q ss_pred EecccC
Q 021484 260 RLQRRQ 265 (312)
Q Consensus 260 ~~~~~~ 265 (312)
|.....
T Consensus 231 d~~~gT 236 (691)
T KOG2048|consen 231 DSIFGT 236 (691)
T ss_pred cccCcc
Confidence 976553
No 123
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.2e-21 Score=159.03 Aligned_cols=244 Identities=50% Similarity=0.907 Sum_probs=192.2
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|+-+|++...+...+.+...+... .-..++++.+|.+.+.+++|+.|..+++||.+.-+.. ....++..||+
T Consensus 257 v~~~Dlr~~~pa~~~~cr~~~~~~-----~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e---~~n~~~~~f~p 328 (559)
T KOG1334|consen 257 VFHIDLRQDVPAEKFVCREADEKE-----RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE---ENNGVLDKFCP 328 (559)
T ss_pred eeeeeeccCCccceeeeeccCCcc-----ceeeeeEecCCCCccccccCChhhhhhhhcccchhhc---cccchhhhcCC
Confidence 345788888888888777665321 2368899999998889999999999999999865422 12236788899
Q ss_pred cccccCCCccEEEEEEccCC-CeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 81 RHLIGKNNIHITGLAYSNTS-ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~-~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
.++.......|++++|+.++ .+|++.+|-.|+++.-..+.++.+....+. .....+.++||.+..+|..+.|+-|.
T Consensus 329 ~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~---~~~~k~vYKGHrN~~TVKgVNFfGPr 405 (559)
T KOG1334|consen 329 HHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPR---EQYVKRVYKGHRNSRTVKGVNFFGPR 405 (559)
T ss_pred ccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcch---hhccchhhcccccccccceeeeccCc
Confidence 99888778889999999776 588888999999997665544333222211 11233458999998889999999999
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhc
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANK 239 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 239 (312)
..|+++|+.-|.|+||+-.+++.++.+.+...-|+|+.-||--+.||+++-|.-|+||.+.+.+....+...+.++..+.
T Consensus 406 sEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~~~~~lk~vi~rN~ 485 (559)
T KOG1334|consen 406 SEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERATEPTLLKQVIKRNK 485 (559)
T ss_pred cceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccccccChhhHHHHHhhhc
Confidence 99999999999999999999999998888777999999999999999999999999999977776666667788888887
Q ss_pred cCC-CCceeEEecCCce
Q 021484 240 QGR-EDHSRITLTPDVI 255 (312)
Q Consensus 240 ~~~-~~~~l~s~~~d~~ 255 (312)
+.. ...+-++...|..
T Consensus 486 ~~~~ed~~~~t~~~d~~ 502 (559)
T KOG1334|consen 486 RERDEDSLTVTDPFDQY 502 (559)
T ss_pred cccccccccccCcHHHH
Confidence 775 4455556555543
No 124
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.7e-19 Score=139.22 Aligned_cols=214 Identities=11% Similarity=0.144 Sum_probs=150.1
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcE
Q 021484 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELV 111 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i 111 (312)
-.|+.|++.| .+||+|+.||.|.|||+.+.. +...+.+|..+|++++||++|+.|+++ .|..|
T Consensus 26 a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T~~---------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 26 AECCQFSRWG-DYLAVGCANGRVVIYDFDTFR---------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred cceEEeccCc-ceeeeeccCCcEEEEEccccc---------------hhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence 6799999999 899999999999999999875 344458999999999999999988886 59999
Q ss_pred EEEEcCCCcCCCCCcC--Cccc---------------ccCCCCCceEe--------cccC--Cc-eeeEEEEecCCCCEE
Q 021484 112 YLFEKNMGLGPSPLSL--SPED---------------LQKREEPQVYS--------GHRN--SQ-TVKGVNFFGPNDEYV 163 (312)
Q Consensus 112 ~iwd~~~~~~~~~~~~--~~~~---------------~~~~~~~~~~~--------~~~~--~~-~v~~v~~~s~~~~~l 163 (312)
.+||+..+.......+ ++|. +.....+..+. .... .. ...+..| .+.|+++
T Consensus 90 ~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~f-dr~g~yI 168 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVF-DRRGKYI 168 (405)
T ss_pred EEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccc-cCCCCEE
Confidence 9999988741111000 1111 00000000110 0000 00 1223335 8889999
Q ss_pred EEeccCceEEEEeccCCeeEEEeecCc-cceEEEEEcCCCCeEEEEeCCCcEEEccCCCC-------CCCCCCCChh---
Q 021484 164 MSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-------DFPPLPDNAE--- 232 (312)
Q Consensus 164 ~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-------~~~~~~~~~~--- 232 (312)
++|...|.+.+++..+.+++..++-.. ..|..+.++..|+.|+..+.|+.||.|+++.- ++........
T Consensus 169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVN 248 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVN 248 (405)
T ss_pred EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHh
Confidence 999999999999999999998887655 78999999999999999999999999997632 1111111111
Q ss_pred -hhhhhhccCCCCceeEEecCC-ceEEEEEecc
Q 021484 233 -KIMKANKQGREDHSRITLTPD-VIMHVLRLQR 263 (312)
Q Consensus 233 -~~~~~~~~~~~~~~l~s~~~d-~~i~i~~~~~ 263 (312)
......+++.++.++++++.. ..++||.-..
T Consensus 249 k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 249 KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred hhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence 122333455688888887743 6788997443
No 125
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=3.5e-21 Score=150.90 Aligned_cols=176 Identities=15% Similarity=0.215 Sum_probs=139.7
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|.|||.+-..+...+... ...|.++.|+|....+|+++++|+.|.+||+++.... .
T Consensus 169 i~IWD~~R~~Pv~smswG-----------~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl---------~---- 224 (433)
T KOG0268|consen 169 IDIWDEQRDNPVSSMSWG-----------ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPL---------K---- 224 (433)
T ss_pred eeecccccCCccceeecC-----------CCceeEEecCCCcchheeeeccCCceEEEecccCCcc---------c----
Confidence 458888766665555543 3469999999988789999999999999999988732 1
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
.+.. .-.-..|+|+|.+-.++++ .|..++.||++.-. .++..+.+|... |.+++| +|.
T Consensus 225 -KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---------------~p~~v~~dhvsA--V~dVdf-spt 283 (433)
T KOG0268|consen 225 -KVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---------------RPLNVHKDHVSA--VMDVDF-SPT 283 (433)
T ss_pred -eeee--eccccceecCccccceeeccccccceehhhhhhc---------------ccchhhccccee--EEEecc-CCC
Confidence 1111 2234578999966666666 59999999998753 577888899866 999999 999
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeec-CccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVG-DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
|+-+++|+.|.+|+||..+.+..-..+.. ....|.++.|+-|.+++++||.|+.||+|....
T Consensus 284 G~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 284 GQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred cchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecch
Confidence 99999999999999999987765443321 125799999999999999999999999998654
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.4e-20 Score=150.59 Aligned_cols=186 Identities=14% Similarity=0.221 Sum_probs=144.1
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++|.+.++.-..++. .|=..|+|+.|+-++ ..|++|+.||.|.+|.+-..--.. +-....+
T Consensus 105 lYlWelssG~LL~v~~-----------aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~------~~~~~~p 166 (476)
T KOG0646|consen 105 LYLWELSSGILLNVLS-----------AHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSAD------NDHSVKP 166 (476)
T ss_pred EEEEEeccccHHHHHH-----------hhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccc------cCCCccc
Confidence 4678887776433332 367789999999999 899999999999999985321100 0011234
Q ss_pred cccccCCCccEEEEEEccCCC--eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec
Q 021484 81 RHLIGKNNIHITGLAYSNTSE--LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 157 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s 157 (312)
...+..|.-+|+.+...+.|. .|+++ .|.++++||+..+ .++..+... ..+.+++. +
T Consensus 167 ~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g----------------~LLlti~fp---~si~av~l-D 226 (476)
T KOG0646|consen 167 LHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG----------------VLLLTITFP---SSIKAVAL-D 226 (476)
T ss_pred eeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc----------------eeeEEEecC---CcceeEEE-c
Confidence 444589999999999988753 67775 6999999999987 566655533 23899998 9
Q ss_pred CCCCEEEEeccCceEEEEeccCC----------------eeEEEeecCcc--ceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484 158 PNDEYVMSGSDCGHLFIWKKKGG----------------KLVRLMVGDRH--VVNQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 158 ~~~~~l~~~~~dg~v~iwd~~~~----------------~~~~~~~~~~~--~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
|.+..++.|+.+|.|.+.++... ..+..+.+|.. .|++++.+-+|..|++|+.||.|+|||+
T Consensus 227 pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 227 PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 99999999999999999886532 23456678887 9999999999999999999999999999
Q ss_pred CCCCC
Q 021484 220 MPTDF 224 (312)
Q Consensus 220 ~~~~~ 224 (312)
.+..+
T Consensus 307 ~S~Q~ 311 (476)
T KOG0646|consen 307 YSKQC 311 (476)
T ss_pred chHHH
Confidence 87653
No 127
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.8e-19 Score=132.00 Aligned_cols=202 Identities=16% Similarity=0.230 Sum_probs=159.0
Q ss_pred CCCccceEEEEEcC---CCCcEEEEEe-CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe
Q 021484 27 PMNSIRLNAIVIDP---RNPNYFAVGG-SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 102 (312)
Q Consensus 27 ~~h~~~v~~~~~~p---~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 102 (312)
..|.+.|..++|-. .+..+|++++ .|..|++-|...++ ..+.+.+|.+.|.++ ++=+|-+
T Consensus 133 nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~---------------~~~a~sghtghilal-yswn~~m 196 (350)
T KOG0641|consen 133 NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ---------------GFHALSGHTGHILAL-YSWNGAM 196 (350)
T ss_pred eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC---------------cceeecCCcccEEEE-EEecCcE
Confidence 46889999999953 3336777754 57778777877775 233338999999886 4446778
Q ss_pred EEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc--c---CCceeeEEEEecCCCCEEEEeccCceEEEEe
Q 021484 103 LISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--R---NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 176 (312)
Q Consensus 103 l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd 176 (312)
+++++ |.+|++||++-. .++.++... . ....|..++. .|.|++|++|..|....+||
T Consensus 197 ~~sgsqdktirfwdlrv~----------------~~v~~l~~~~~~~glessavaav~v-dpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 197 FASGSQDKTIRFWDLRVN----------------SCVNTLDNDFHDGGLESSAVAAVAV-DPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred EEccCCCceEEEEeeecc----------------ceeeeccCcccCCCcccceeEEEEE-CCCcceeeeccCCCceEEEE
Confidence 99975 999999999865 343333211 1 1134899998 99999999999999999999
Q ss_pred ccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC-----CCCChhhhhhhhccCCCCceeEEec
Q 021484 177 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-----LPDNAEKIMKANKQGREDHSRITLT 251 (312)
Q Consensus 177 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~s~~ 251 (312)
++.+++++.+..|...|.++.|+|...|+++++.|..|++-|++...... +.+|...++.+. |++..-.+++.+
T Consensus 260 irg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~r-wh~~d~sfisss 338 (350)
T KOG0641|consen 260 IRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCR-WHPQDFSFISSS 338 (350)
T ss_pred eeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEE-ecCccceeeecc
Confidence 99999999999999999999999999999999999999999998764332 335677776665 677777888999
Q ss_pred CCceEEEEEec
Q 021484 252 PDVIMHVLRLQ 262 (312)
Q Consensus 252 ~d~~i~i~~~~ 262 (312)
.|.+..+|.+.
T Consensus 339 adkt~tlwa~~ 349 (350)
T KOG0641|consen 339 ADKTATLWALN 349 (350)
T ss_pred CcceEEEeccC
Confidence 99999999753
No 128
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=157.86 Aligned_cols=197 Identities=18% Similarity=0.272 Sum_probs=162.2
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
+...|.+++-.. ..|++|+.+++|..|.+.+++ ...++....-++..++++.+|+++|.+ +
T Consensus 55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~---------------~~~iL~Rftlp~r~~~v~g~g~~iaagsd 116 (933)
T KOG1274|consen 55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGE---------------EDTILARFTLPIRDLAVSGSGKMIAAGSD 116 (933)
T ss_pred cCceeEEEeecc---cceEEeeccceEEEeeCCCCC---------------ccceeeeeeccceEEEEecCCcEEEeecC
Confidence 455677776644 589999999999999999875 222334456789999999999999987 5
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 187 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 187 (312)
|-.|++.++... ...+.+++|..+ |.++.| +|.+++||+.+-||.|++||+.++.+...+.
T Consensus 117 D~~vK~~~~~D~----------------s~~~~lrgh~ap--Vl~l~~-~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~ 177 (933)
T KOG1274|consen 117 DTAVKLLNLDDS----------------SQEKVLRGHDAP--VLQLSY-DPKGNFLAVSSCDGKVQIWDLQDGILSKTLT 177 (933)
T ss_pred ceeEEEEecccc----------------chheeecccCCc--eeeeeE-cCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence 889999999887 678889999977 999999 9999999999999999999999988766664
Q ss_pred cC--------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCC-ChhhhhhhhccCCCCceeEEecCCceEE
Q 021484 188 GD--------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD-NAEKIMKANKQGREDHSRITLTPDVIMH 257 (312)
Q Consensus 188 ~~--------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 257 (312)
+- ...+..++|+|++..++..+.|+.|++|+..+.+. ..+.. +....+....|++.+.++++++.++.|-
T Consensus 178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 178 GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQIL 257 (933)
T ss_pred cCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEE
Confidence 31 34567899999999999999999999999988763 33332 3333367778999999999999999999
Q ss_pred EEEec
Q 021484 258 VLRLQ 262 (312)
Q Consensus 258 i~~~~ 262 (312)
|||..
T Consensus 258 vWnv~ 262 (933)
T KOG1274|consen 258 VWNVD 262 (933)
T ss_pred EEecc
Confidence 99988
No 129
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=1.3e-19 Score=138.32 Aligned_cols=212 Identities=16% Similarity=0.198 Sum_probs=157.2
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCC-------CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSD-------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS 100 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 100 (312)
.|.+.|..++-+|..+++|+++..+ ..+.||.+....-.... .+.. ++..+-..+-+.|.++.|.|++
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~---~tlE--~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS---STLE--CVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc---chhh--HhhcCCHHHhCceeeEEEcCCC
Confidence 4788999999999988888887542 35788998744311000 0111 2233333455689999999999
Q ss_pred CeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe-----cccCCceeeEEEEecC--CCCEEEEeccCceEE
Q 021484 101 ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-----GHRNSQTVKGVNFFGP--NDEYVMSGSDCGHLF 173 (312)
Q Consensus 101 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~v~~~s~--~~~~l~~~~~dg~v~ 173 (312)
..+++-.|..|.+|++.... +....+. .+... .++-+| +| +++.+++. .|+++.
T Consensus 136 ~klasm~dn~i~l~~l~ess---------------~~vaev~ss~s~e~~~~--ftsg~W-spHHdgnqv~tt-~d~tl~ 196 (370)
T KOG1007|consen 136 DKLASMDDNNIVLWSLDESS---------------KIVAEVLSSESAEMRHS--FTSGAW-SPHHDGNQVATT-SDSTLQ 196 (370)
T ss_pred CeeEEeccCceEEEEcccCc---------------chheeecccccccccce--eccccc-CCCCccceEEEe-CCCcEE
Confidence 99999889999999998762 1112221 12322 677788 66 57777665 589999
Q ss_pred EEeccCCeeEEEe-ecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEE
Q 021484 174 IWKKKGGKLVRLM-VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRIT 249 (312)
Q Consensus 174 iwd~~~~~~~~~~-~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s 249 (312)
.||+++.++...+ .+|...|.++.|+|+.++ |++|+.||.|+|||.+..+ +..+++|...+...-+......++++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 9999998776666 478889999999999876 9999999999999998765 57888999988766544446789999
Q ss_pred ecCCceEEEEEecc
Q 021484 250 LTPDVIMHVLRLQR 263 (312)
Q Consensus 250 ~~~d~~i~i~~~~~ 263 (312)
++.|..+.+|....
T Consensus 277 ~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 277 GGSDSAVNLSCASS 290 (370)
T ss_pred cCCCceeEEEeccc
Confidence 99999999997543
No 130
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=9e-20 Score=140.18 Aligned_cols=212 Identities=14% Similarity=0.168 Sum_probs=149.1
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc--CCCeEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLI 104 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~ 104 (312)
.+|.+-|.++.|++.| +.+|+++.|++++|||..+.. ..+....-...|.+.|..+.|.+ -|+.+|
T Consensus 10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s-----------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA 77 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDS-----------GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVA 77 (361)
T ss_pred cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCC-----------CceEEeeeEEecCCcEEEEEecCccccceEE
Confidence 4688999999999999 899999999999999975432 11122222378999999999976 467899
Q ss_pred Eec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC--CCEEEEeccCceEEEEeccCC-
Q 021484 105 SYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN--DEYVMSGSDCGHLFIWKKKGG- 180 (312)
Q Consensus 105 s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~--~~~l~~~~~dg~v~iwd~~~~- 180 (312)
+++ |+++.||.-.... .... -.......++...... |+++.| .|. |-.|++++.||.|+||+.-..
T Consensus 78 ~cS~Drtv~iWEE~~~~--~~~~-----~~~Wv~~ttl~Dsrss--V~DV~F-aP~hlGLklA~~~aDG~lRIYEA~dp~ 147 (361)
T KOG2445|consen 78 TCSYDRTVSIWEEQEKS--EEAH-----GRRWVRRTTLVDSRSS--VTDVKF-APKHLGLKLAAASADGILRIYEAPDPM 147 (361)
T ss_pred EEecCCceeeeeecccc--cccc-----cceeEEEEEeecCCcc--eeEEEe-cchhcceEEEEeccCcEEEEEecCCcc
Confidence 975 9999999753110 0000 0111233445555544 999999 775 667899999999999984210
Q ss_pred -------------------e-----------------------------------------------eEEEeecCccceE
Q 021484 181 -------------------K-----------------------------------------------LVRLMVGDRHVVN 194 (312)
Q Consensus 181 -------------------~-----------------------------------------------~~~~~~~~~~~v~ 194 (312)
+ .+.++.+|+.+|+
T Consensus 148 nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~ 227 (361)
T KOG2445|consen 148 NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIR 227 (361)
T ss_pred ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcce
Confidence 0 0114456888999
Q ss_pred EEEEcCCC----CeEEEEeCCCcEEEccCCCCC---------------------CCCCCCChhhhhhhhccCCCCceeEE
Q 021484 195 QLEPHPHI----PMFATCGIEKTVKLWAPMPTD---------------------FPPLPDNAEKIMKANKQGREDHSRIT 249 (312)
Q Consensus 195 ~~~~~p~~----~~l~t~~~d~~i~iwd~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~s 249 (312)
+++|.|+- ..||+++.|| |+||.+.... +..+.+|...+.... |...+..|.+
T Consensus 228 di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~-wNmtGtiLsS 305 (361)
T KOG2445|consen 228 DISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVR-WNMTGTILSS 305 (361)
T ss_pred eeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEE-EeeeeeEEee
Confidence 99999963 3599999999 9999987411 122334555554443 4556889999
Q ss_pred ecCCceEEEEEec
Q 021484 250 LTPDVIMHVLRLQ 262 (312)
Q Consensus 250 ~~~d~~i~i~~~~ 262 (312)
.+.||.+|+|...
T Consensus 306 tGdDG~VRLWkan 318 (361)
T KOG2445|consen 306 TGDDGCVRLWKAN 318 (361)
T ss_pred cCCCceeeehhhh
Confidence 9999999999754
No 131
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=1.6e-20 Score=153.12 Aligned_cols=213 Identities=14% Similarity=0.132 Sum_probs=163.9
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|-||||.++.+.-....... .-..++++.+|+. ++..++..||.|.|||+....+ +
T Consensus 489 lsiWDLAapTprikaeltss---------apaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~--------------V 544 (705)
T KOG0639|consen 489 LSIWDLAAPTPRIKAELTSS---------APACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTL--------------V 544 (705)
T ss_pred eeeeeccCCCcchhhhcCCc---------chhhhhhhcCCcc-ceeeeeccCCcEEEEEccccee--------------e
Confidence 46899987654322222111 1246789999998 7888999999999999998762 2
Q ss_pred cccccCCCccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+ .+|.+.+.||..+++|..|=++. |++|+.||++.+ +.++ .|.-...|.++.+ .|.
T Consensus 545 rqf-qGhtDGascIdis~dGtklWTGGlDntvRcWDlreg----------------rqlq---qhdF~SQIfSLg~-cP~ 603 (705)
T KOG0639|consen 545 RQF-QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREG----------------RQLQ---QHDFSSQIFSLGY-CPT 603 (705)
T ss_pred ecc-cCCCCCceeEEecCCCceeecCCCccceeehhhhhh----------------hhhh---hhhhhhhheeccc-CCC
Confidence 233 89999999999999999888875 999999999876 3332 2322234999998 999
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhh
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKAN 238 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~ 238 (312)
+.+|+.|-+.+.+.+..... .....+..|...|.++.|.+.|+++++.+.|..+..|..--+. +.... ....++.+
T Consensus 604 ~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsC- 680 (705)
T KOG0639|consen 604 GDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSC- 680 (705)
T ss_pred ccceeeecccCcEEEEecCC-ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceee-
Confidence 99999999999999988764 4445677799999999999999999999999999999865443 33333 33444443
Q ss_pred ccCCCCceeEEecCCceEEEEEe
Q 021484 239 KQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.++.++.++++|+.|..-.++.+
T Consensus 681 DIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 681 DISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeccCceEEEecCCCcceEEEEE
Confidence 47788999999999987777654
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.84 E-value=4.8e-18 Score=140.26 Aligned_cols=248 Identities=13% Similarity=0.104 Sum_probs=163.8
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++||+.+.+....+.. ...+.+++|+|++..++++++.++.|++||..+++...
T Consensus 13 v~~~d~~t~~~~~~~~~------------~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~------------- 67 (300)
T TIGR03866 13 ISVIDTATLEVTRTFPV------------GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG------------- 67 (300)
T ss_pred EEEEECCCCceEEEEEC------------CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE-------------
Confidence 57899887664444332 12356899999984445677889999999998876321
Q ss_pred cccccCCCccEEEEEEccCCCeEEE-e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP 158 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~ 158 (312)
.+ ..+. .+..++|+|+++.+++ + .++.+++||+.+. +.+..+... .. +.+++| +|
T Consensus 68 -~~-~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~----------------~~~~~~~~~-~~--~~~~~~-~~ 124 (300)
T TIGR03866 68 -TL-PSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETR----------------KVLAEIPVG-VE--PEGMAV-SP 124 (300)
T ss_pred -ec-cCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCC----------------eEEeEeeCC-CC--cceEEE-CC
Confidence 11 1222 2457899999986654 4 4899999999875 444444422 22 678998 99
Q ss_pred CCCEEEEeccCc-eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCCCCC-CCCCCCh----
Q 021484 159 NDEYVMSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTDF-PPLPDNA---- 231 (312)
Q Consensus 159 ~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~~-~~~~~~~---- 231 (312)
++++++++..++ .+.+||..+++....+.. ...+..++|+|+++.++++ ..++.|++||+.+++. ..+..+.
T Consensus 125 dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~ 203 (300)
T TIGR03866 125 DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH 203 (300)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc
Confidence 999999888765 567789988877665543 2345789999999987544 4699999999988753 2221111
Q ss_pred -hhh-hhhhccCCCCcee-EEecCCceEEEEEecccCccce---------eEeecCCCccCCC-CCCCeEEEeecCCCC
Q 021484 232 -EKI-MKANKQGREDHSR-ITLTPDVIMHVLRLQRRQTLAY---------RERRYNAADFESD-EEEGETYLLGFSDSD 297 (312)
Q Consensus 232 -~~~-~~~~~~~~~~~~l-~s~~~d~~i~i~~~~~~~~~~~---------~~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 297 (312)
... .....+++++..+ ++...++.+.+||+.+...... ..+.|++..+... ..++.|.++|...+.
T Consensus 204 ~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 204 PEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred cccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 111 1122356666664 4556677899999865432211 2456666666554 456778999887765
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=3.7e-19 Score=136.81 Aligned_cols=202 Identities=20% Similarity=0.206 Sum_probs=140.7
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
|..++.+++|.+. ..+++|+.||.|+.+|+.++. ...+..|..+|.+|.+++....++++ -
T Consensus 53 ~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~----------------~~~igth~~~i~ci~~~~~~~~vIsgsW 114 (323)
T KOG1036|consen 53 HGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGN----------------EDQIGTHDEGIRCIEYSYEVGCVISGSW 114 (323)
T ss_pred cCCceeeeeccCC--ceEEEeccCceEEEEEecCCc----------------ceeeccCCCceEEEEeeccCCeEEEccc
Confidence 7889999999985 589999999999999999875 12237899999999999876666666 4
Q ss_pred CCcEEEEEcCCCc-----------------------CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE
Q 021484 108 DELVYLFEKNMGL-----------------------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 164 (312)
Q Consensus 108 d~~i~iwd~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~ 164 (312)
|++|++||.+... +.....+..+++.++..........-.-.++++++ -|++.=.+
T Consensus 115 D~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~-~pn~eGy~ 193 (323)
T KOG1036|consen 115 DKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVAL-VPNGEGYV 193 (323)
T ss_pred CccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEE-ecCCCceE
Confidence 9999999998432 11122233344444332221111111123889998 67877788
Q ss_pred EeccCceEEEEeccCC----eeEEEeecCcc---------ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCC
Q 021484 165 SGSDCGHLFIWKKKGG----KLVRLMVGDRH---------VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDN 230 (312)
Q Consensus 165 ~~~~dg~v~iwd~~~~----~~~~~~~~~~~---------~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~ 230 (312)
+++-||+|.+=.+++. +....|+.|.. +|++++|||-...|+||+.||.|.+||+...+ +..+...
T Consensus 194 ~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 194 VSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred EEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 9999999998776655 33445566642 79999999999999999999999999998875 4555544
Q ss_pred hhhhhhhhccCCCCceeEEe
Q 021484 231 AEKIMKANKQGREDHSRITL 250 (312)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~s~ 250 (312)
...+ ....++.++..|+.+
T Consensus 274 ~~SI-~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 274 ETSI-SSLSFSMDGSLLAIA 292 (323)
T ss_pred CCce-EEEEeccCCCeEEEE
Confidence 3334 222244444444433
No 134
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.3e-19 Score=145.63 Aligned_cols=216 Identities=14% Similarity=0.125 Sum_probs=157.0
Q ss_pred ceEEEEEcCC------CCcEEEEEeCCCeEEEEEccCCeecCC-CCCCC---Ccc--cccccccccCCCccEEEEEEccC
Q 021484 32 RLNAIVIDPR------NPNYFAVGGSDEYARVYDIRKCHWYSP-ISSDT---PVD--TFCPRHLIGKNNIHITGLAYSNT 99 (312)
Q Consensus 32 ~v~~~~~~p~------~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~---~~~--~~~~~~~~~~~~~~i~~~~~~~~ 99 (312)
...|++|... .++++|.|+.|..|.|||+.-...+.. ...+. ... .-.......+|+..|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 3456666432 127999999999999999873321100 00000 000 00011222478999999999987
Q ss_pred CC-eEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEec
Q 021484 100 SE-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK 177 (312)
Q Consensus 100 ~~-~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~ 177 (312)
-+ +||+++ |.+|.+||+.++ ++.+++..|... |.++.|++....+|++|+.|++|.+.|.
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g----------------~p~~s~~~~~k~--Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTG----------------KPKSSITHHGKK--VQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred cceeEEecCCCceEEEEEcCCC----------------CcceehhhcCCc--eeEEEecCCCceEEEeccccceEEeeec
Confidence 75 888875 999999999998 788888877755 9999997778999999999999999999
Q ss_pred cCCeeE-EEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484 178 KGGKLV-RLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 178 ~~~~~~-~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
+..... ..++ ..+.|-.++|.|.... ++.+..||+|+-+|++... +.++..|...+-.+........++++++.+
T Consensus 317 R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d 395 (463)
T KOG0270|consen 317 RDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD 395 (463)
T ss_pred cCccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecccc
Confidence 843222 2333 4578999999998766 7777799999999998763 466667777775444444467889999999
Q ss_pred ceEEEEEecccCc
Q 021484 254 VIMHVLRLQRRQT 266 (312)
Q Consensus 254 ~~i~i~~~~~~~~ 266 (312)
+.+++|++...+.
T Consensus 396 ~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 396 KVVKLWKFDVDSP 408 (463)
T ss_pred ceEEEEeecCCCC
Confidence 9999999875543
No 135
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=4.5e-19 Score=148.50 Aligned_cols=257 Identities=8% Similarity=0.057 Sum_probs=170.1
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
..|...|.+++|-| +..+|++++.|.++++||+.+.+++. ..+..+|...+.+++|.|... .+++
T Consensus 97 ~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G-------------~~~~~GH~~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVG-------------GRLNLGHTGSVKSECFMPTNPAVFCT 162 (720)
T ss_pred ccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeec-------------ceeecccccccchhhhccCCCcceee
Confidence 45999999999999 65899999999999999999887531 123479999999999999886 6777
Q ss_pred e-cCCcEEEEEcCCCcCC----CCCcCCccc---ccCC----CCCceEecccCC--ceeeEEEEecCCCCEEEEecc-Cc
Q 021484 106 Y-NDELVYLFEKNMGLGP----SPLSLSPED---LQKR----EEPQVYSGHRNS--QTVKGVNFFGPNDEYVMSGSD-CG 170 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~----~~~~~~~~~---~~~~----~~~~~~~~~~~~--~~v~~v~~~s~~~~~l~~~~~-dg 170 (312)
| .||.|.|||++-.... ....+...- .... +.+.....+... ..|+.+.| .|...|++++. |+
T Consensus 163 GgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f--kDe~tlaSaga~D~ 240 (720)
T KOG0321|consen 163 GGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF--KDESTLASAGAADS 240 (720)
T ss_pred ccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE--eccceeeeccCCCc
Confidence 6 5999999999754200 000000000 0000 111111122211 12445544 78888998888 99
Q ss_pred eEEEEeccCCeeEE--------EeecC---ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC---CCCChhhh-h
Q 021484 171 HLFIWKKKGGKLVR--------LMVGD---RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP---LPDNAEKI-M 235 (312)
Q Consensus 171 ~v~iwd~~~~~~~~--------~~~~~---~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~---~~~~~~~~-~ 235 (312)
.|+|||++...... .+..| .-.++++.....|.+|.+.+.|+.|.+|++.+..+.. +.++...- +
T Consensus 241 ~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~ 320 (720)
T KOG0321|consen 241 TIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFY 320 (720)
T ss_pred ceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceee
Confidence 99999998654322 12223 2357788888889998888889999999998876433 22333222 2
Q ss_pred hhhccCCCCceeEEecCCceEEEEEecccCccce-----------eEeec-CCCccCCCCCCCeEEEeecCCCCCC
Q 021484 236 KANKQGREDHSRITLTPDVIMHVLRLQRRQTLAY-----------RERRY-NAADFESDEEEGETYLLGFSDSDAS 299 (312)
Q Consensus 236 ~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ 299 (312)
.....++++.++++++.|....+|.+........ ..+.+ ....++...++-++-+|++.++-++
T Consensus 321 vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 321 VKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred eeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhh
Confidence 2233566899999999999999999876532211 12222 2334445578888999999665433
No 136
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.6e-20 Score=166.59 Aligned_cols=207 Identities=14% Similarity=0.192 Sum_probs=164.4
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccc-ccCCCccEEEEEEccCCC-eEEE
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
-|.+.|..+.|++..+++||+|+.||.|.|||+..-+ .+.+. -....+.|.+++|+..-. +|++
T Consensus 114 ~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~--------------tP~~~~~~~~~~eI~~lsWNrkvqhILAS 179 (1049)
T KOG0307|consen 114 KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE--------------TPFTPGSQAPPSEIKCLSWNRKVSHILAS 179 (1049)
T ss_pred ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC--------------CCCCCCCCCCcccceEeccchhhhHHhhc
Confidence 4899999999999887899999999999999998754 11111 122467899999998764 7777
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCc---eEEEEeccC-
Q 021484 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCG---HLFIWKKKG- 179 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg---~v~iwd~~~- 179 (312)
+ .+|.+.|||++.. +.+..+..+.....+..++| +|+ ...|+++++|. .|.+||++.
T Consensus 180 ~s~sg~~~iWDlr~~----------------~pii~ls~~~~~~~~S~l~W-hP~~aTql~~As~dd~~PviqlWDlR~a 242 (1049)
T KOG0307|consen 180 GSPSGRAVIWDLRKK----------------KPIIKLSDTPGRMHCSVLAW-HPDHATQLLVASGDDSAPVIQLWDLRFA 242 (1049)
T ss_pred cCCCCCceeccccCC----------------CcccccccCCCccceeeeee-CCCCceeeeeecCCCCCceeEeeccccc
Confidence 6 4889999999987 56666666655445889999 665 45666666544 599999885
Q ss_pred CeeEEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEE
Q 021484 180 GKLVRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMH 257 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 257 (312)
..+++++.+|...|.++.|++.+ +++++++.|+.|.+|+.+++++ ..++...++.....|...+...+...+.||.|.
T Consensus 243 ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 243 SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 45678888999999999999987 6799999999999999999885 667766677766665555677888899999999
Q ss_pred EEEecccC
Q 021484 258 VLRLQRRQ 265 (312)
Q Consensus 258 i~~~~~~~ 265 (312)
|+.+....
T Consensus 323 I~sl~~~~ 330 (1049)
T KOG0307|consen 323 IYSLQGTD 330 (1049)
T ss_pred eeeeecCC
Confidence 99987653
No 137
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=2.7e-19 Score=136.51 Aligned_cols=206 Identities=14% Similarity=0.214 Sum_probs=156.1
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc--CCCeEEEe
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN--TSELLISY 106 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~s~ 106 (312)
|-+.|.|+.|.|++ ..+++-. |..|.+|++....-+ +.... ...-..+....++-+|+| +|..+++.
T Consensus 122 avg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~--------vaev~-ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 122 AVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKI--------VAEVL-SSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred HhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcch--------heeec-ccccccccceecccccCCCCccceEEEe
Confidence 55689999999987 5666554 889999999876521 11111 111133566788889998 67899999
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCc-eEecccCCceeeEEEEecCCCC-EEEEeccCceEEEEeccC-CeeE
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKG-GKLV 183 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~-~~~~ 183 (312)
+|+++..||+++. +... .-..|... |..+.| +|+.+ +|++|+.||.|++||.+. ..++
T Consensus 191 ~d~tl~~~D~RT~----------------~~~~sI~dAHgq~--vrdlDf-Npnkq~~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 191 SDSTLQFWDLRTM----------------KKNNSIEDAHGQR--VRDLDF-NPNKQHILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred CCCcEEEEEccch----------------hhhcchhhhhcce--eeeccC-CCCceEEEEEcCCCccEEEEeccCCCccc
Confidence 9999999999986 3333 23355544 999999 77755 578999999999999874 5688
Q ss_pred EEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCC------------------------------CCCCCCCCChh
Q 021484 184 RLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMP------------------------------TDFPPLPDNAE 232 (312)
Q Consensus 184 ~~~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~------------------------------~~~~~~~~~~~ 232 (312)
..+.+|...|.+|.|+|... ++++++.|..|.+|...+ +.+.++..|..
T Consensus 252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehED 331 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED 331 (370)
T ss_pred cccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccccccc
Confidence 99999999999999999765 588999999999996431 12335556788
Q ss_pred hhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 233 KIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 233 ~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.++.+.|.+.+.-.+++.+.||.+.|=++.+.
T Consensus 332 SVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 332 SVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred ceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 88888877778888899999999888766543
No 138
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.83 E-value=2.8e-19 Score=153.87 Aligned_cols=197 Identities=13% Similarity=0.128 Sum_probs=161.3
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021484 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 109 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~ 109 (312)
..+++++.++-| ++.+.|++.|.|-+|++++|-.... |. --..|..+|++++...-++.++++ .+|
T Consensus 449 ~~~~av~vs~CG-NF~~IG~S~G~Id~fNmQSGi~r~s---------f~---~~~ah~~~V~gla~D~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 449 INATAVCVSFCG-NFVFIGYSKGTIDRFNMQSGIHRKS---------FG---DSPAHKGEVTGLAVDGTNRLLVSAGADG 515 (910)
T ss_pred cceEEEEEeccC-ceEEEeccCCeEEEEEcccCeeecc---------cc---cCccccCceeEEEecCCCceEEEccCcc
Confidence 568999999999 8999999999999999999863322 10 115789999999998888888885 699
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 189 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 189 (312)
.+.+||..+. .+...+.-.. .+.++.+ +.....++.+..|-.|.++|..+.+.++.+.+|
T Consensus 516 ilkfw~f~~k----------------~l~~~l~l~~---~~~~iv~-hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh 575 (910)
T KOG1539|consen 516 ILKFWDFKKK----------------VLKKSLRLGS---SITGIVY-HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH 575 (910)
T ss_pred eEEEEecCCc----------------ceeeeeccCC---Ccceeee-eehhhhhhhhcCceeEEEEEchhhhhhHHhhcc
Confidence 9999999876 4444443222 2777877 777888999999999999999999999999999
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC-ceEEEEEe
Q 021484 190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD-VIMHVLRL 261 (312)
Q Consensus 190 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~i~~~ 261 (312)
...|++++|||+|+++++++.|++||+||+.++.+.... +...+.....++|++.+|++...| .-|++|.-
T Consensus 576 ~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~-~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 576 GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL-LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE-ecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 999999999999999999999999999999998753332 233344555688999999999988 78999963
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=3.9e-18 Score=131.27 Aligned_cols=153 Identities=14% Similarity=0.187 Sum_probs=123.5
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
...|.++.|+|.. ..|++++.||++++|++....+... ..|..++.+.+|.++.+.+..+.||
T Consensus 13 ~d~IS~v~f~~~~-~~LLvssWDgslrlYdv~~~~l~~~----------------~~~~~plL~c~F~d~~~~~~G~~dg 75 (323)
T KOG1036|consen 13 EDGISSVKFSPSS-SDLLVSSWDGSLRLYDVPANSLKLK----------------FKHGAPLLDCAFADESTIVTGGLDG 75 (323)
T ss_pred hhceeeEEEcCcC-CcEEEEeccCcEEEEeccchhhhhh----------------eecCCceeeeeccCCceEEEeccCc
Confidence 5689999999988 6777888999999999987642211 4578899999999876666666799
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 189 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 189 (312)
.|+.+|+.++ ....+..|..+ +.++.+ .+....+++|+.|++|++||.+...++..+...
T Consensus 76 ~vr~~Dln~~-----------------~~~~igth~~~--i~ci~~-~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~ 135 (323)
T KOG1036|consen 76 QVRRYDLNTG-----------------NEDQIGTHDEG--IRCIEY-SYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG 135 (323)
T ss_pred eEEEEEecCC-----------------cceeeccCCCc--eEEEEe-eccCCeEEEcccCccEEEEeccccccccccccC
Confidence 9999999986 33445567755 999999 788889999999999999999976666555533
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484 190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 190 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
..|.++.. .++.|+.|+.|..+.+||++..
T Consensus 136 -kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 136 -KKVYCMDV--SGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred -ceEEEEec--cCCEEEEeecCceEEEEEcccc
Confidence 47877765 6778999999999999998853
No 140
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.82 E-value=4.2e-18 Score=139.18 Aligned_cols=258 Identities=11% Similarity=0.093 Sum_probs=184.7
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
+.+|+++.+...+..-....+ -+..|.|++|.+++ -++||.++|.|.||+..+.+ ..
T Consensus 224 ~~Fw~~~~~~l~k~~~~fek~-------ekk~Vl~v~F~eng--dviTgDS~G~i~Iw~~~~~~--------------~~ 280 (626)
T KOG2106|consen 224 LYFWTLRGGSLVKRQGIFEKR-------EKKFVLCVTFLENG--DVITGDSGGNILIWSKGTNR--------------IS 280 (626)
T ss_pred EEEEEccCCceEEEeeccccc-------cceEEEEEEEcCCC--CEEeecCCceEEEEeCCCce--------------EE
Confidence 357887766543333222211 13679999999998 58999999999999998766 34
Q ss_pred cccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCccc-------------------------ccCC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPED-------------------------LQKR 135 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~-------------------------~~~~ 135 (312)
+.. ..|.+.|.+++.-.+|.+|..+.|..|..||-. ........++... ....
T Consensus 281 k~~-~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~ 358 (626)
T KOG2106|consen 281 KQV-HAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN 358 (626)
T ss_pred eEe-eecCCceEEEEEecCccEeecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC
Confidence 444 389999999999999998884569999999932 2111111111111 0111
Q ss_pred CCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEE
Q 021484 136 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVK 215 (312)
Q Consensus 136 ~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~ 215 (312)
.......+|... ...++. +|+.+++++++.|+.+++|+ ..+++-... -..++.++.|+|.| .+|.|...|...
T Consensus 359 ~f~~~v~gh~de--lwgla~-hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 359 GFTLTVQGHGDE--LWGLAT-HPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWF 431 (626)
T ss_pred CceEEEEecccc--eeeEEc-CCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEE
Confidence 223334567655 888988 89999999999999999999 445544433 34678899999999 999999999999
Q ss_pred EccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccC------------ccceeEeecCCCccCCCC
Q 021484 216 LWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQ------------TLAYRERRYNAADFESDE 283 (312)
Q Consensus 216 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~------------~~~~~~~~~~~~~~~~~~ 283 (312)
+.|.+++...++... +..+....+++++.+++.++.|+.|+++.+.... .+....++++.+.+.+..
T Consensus 432 V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 432 VLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred EEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 999999776555534 5556778889999999999999999999886532 222236677777777666
Q ss_pred CCCeEEEe
Q 021484 284 EEGETYLL 291 (312)
Q Consensus 284 ~~~~v~~~ 291 (312)
.+-.++.|
T Consensus 511 ~d~eiLyW 518 (626)
T KOG2106|consen 511 GDYEILYW 518 (626)
T ss_pred CceEEEEE
Confidence 55556666
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=4.4e-19 Score=144.61 Aligned_cols=253 Identities=13% Similarity=0.082 Sum_probs=183.4
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
++|||..+......+..++.+ -.+.++.|+..+--.+++.+.|..+++|.-.... - +...
T Consensus 14 ~kl~D~s~~~~~~~~~~~t~~---------pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~-~----------~Vp~ 73 (673)
T KOG4378|consen 14 TKLSDFSDLETKSEYVHQTAE---------PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT-P----------EVPR 73 (673)
T ss_pred eEEeecccccCccccccCCCC---------CcceeeeccccceEEEeecCCceeEEEecccCCC-C----------ccce
Confidence 578998877766666665544 2489999998762223334678889998755331 0 0011
Q ss_pred cccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 81 RHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 81 ~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..... ...-.|++......+++++ ..+.|+|||++.. .+.+.+++|... |+++.| +-.
T Consensus 74 ~~k~~--gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k----------------l~hr~lkdh~st--vt~v~Y-N~~ 132 (673)
T KOG4378|consen 74 VRKLT--GDNAFCVACASQSLYEISGGQSGCVKIWDLRAK----------------LIHRFLKDHQST--VTYVDY-NNT 132 (673)
T ss_pred eeccc--cchHHHHhhhhcceeeeccCcCceeeehhhHHH----------------HHhhhccCCcce--eEEEEe-cCC
Confidence 11111 2233455555555788886 5999999999875 566788889855 999999 889
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCc-cceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC-CCC-CCChhhhh
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF-PPL-PDNAEKIM 235 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~-~~~-~~~~~~~~ 235 (312)
..||++++..|.|.|..+.++.....|.... ..|.-+.|+|..+. |.+++.+|.|.+||..+... ..+ ..|..+.
T Consensus 133 DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~- 211 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC- 211 (673)
T ss_pred cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCc-
Confidence 9999999999999999999998888887543 45668999999887 77889999999999998874 333 2344444
Q ss_pred hhhccCC-CCceeEEecCCceEEEEEecccC---------ccceeEeecCCCccCCCCCCCeEEEeecCC
Q 021484 236 KANKQGR-EDHSRITLTPDVIMHVLRLQRRQ---------TLAYRERRYNAADFESDEEEGETYLLGFSD 295 (312)
Q Consensus 236 ~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 295 (312)
.-.++++ +..++++.+.|..|.++|+.... .+.-..+.+.+..+..+...|+++.+|...
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred CcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 4444565 67789999999999999987542 222237788888999999999999988743
No 142
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.82 E-value=6e-19 Score=149.76 Aligned_cols=217 Identities=18% Similarity=0.272 Sum_probs=165.3
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC---CeEEE
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---ELLIS 105 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~s 105 (312)
-+.++.+++.+|++ +.||+|..-|.+++|++...+. ...+..|...|.++.|+..- ++||+
T Consensus 458 ~r~G~R~~~vSp~g-qhLAsGDr~GnlrVy~Lq~l~~---------------~~~~eAHesEilcLeyS~p~~~~kLLAS 521 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDG-QHLASGDRGGNLRVYDLQELEY---------------TCFMEAHESEILCLEYSFPVLTNKLLAS 521 (1080)
T ss_pred cccceEEEEECCCc-ceecccCccCceEEEEehhhhh---------------hhheecccceeEEEeecCchhhhHhhhh
Confidence 45689999999999 8999999999999999987652 22237899999999998643 58888
Q ss_pred e-cCCcEEEEEcCCCcCCC------CCcCCc-----cc------------------ccCCCCCceEeccc---CCceeeE
Q 021484 106 Y-NDELVYLFEKNMGLGPS------PLSLSP-----ED------------------LQKREEPQVYSGHR---NSQTVKG 152 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~------~~~~~~-----~~------------------~~~~~~~~~~~~~~---~~~~v~~ 152 (312)
+ .|..|.+||+....... ..++.. .+ .++..-...|..|. ....+..
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD 601 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD 601 (1080)
T ss_pred ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEE
Confidence 7 49999999997653110 000000 00 11000111121111 1123778
Q ss_pred EEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec---CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCC
Q 021484 153 VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLP 228 (312)
Q Consensus 153 v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~ 228 (312)
++. .|..+++++++.|..|+||++.+++..+.|++ |.+..-.+...|.|.|+++.+.|+++.++|..+++. ..+.
T Consensus 602 m~V-dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 602 MAV-DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred eee-CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence 887 88999999999999999999999999999974 556777899999999999999999999999998874 7777
Q ss_pred CChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 229 DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
+|...+. -..+.++-.-|++.+.|+.|.+|.+..
T Consensus 681 GHsE~VT-G~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 681 GHSEAVT-GVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred Ccchhee-eeeecccchhheeecCCceEEEEECch
Confidence 8887774 445788899999999999999998754
No 143
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=1.7e-19 Score=139.83 Aligned_cols=218 Identities=15% Similarity=0.151 Sum_probs=153.1
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||...|+.+.|+|..++++++++.|..||+|++++..++. ...-..+|.+.|.++.|+++|.+++++
T Consensus 132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~------------VfGG~egHrdeVLSvD~~~~gd~i~Sc 199 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVA------------VFGGVEGHRDEVLSVDFSLDGDRIASC 199 (385)
T ss_pred eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEE------------EecccccccCcEEEEEEcCCCCeeecc
Confidence 46999999999999999999999999999999999988542 222237899999999999999999996
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCC--ccc------ccCC-CCCc---eEecccCCceeeEEEEecCCCCEEEEeccCceEE
Q 021484 107 -NDELVYLFEKNMGLGPSPLSLS--PED------LQKR-EEPQ---VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF 173 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~--~~~------~~~~-~~~~---~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~ 173 (312)
.|.+|.+|++....-....... ... +.+. ...- +-.-|. .+|-|+.|+ |+++++-+-++.|.
T Consensus 200 GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHr--nyVDCvrw~---gd~ilSkscenaI~ 274 (385)
T KOG1034|consen 200 GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHR--NYVDCVRWF---GDFILSKSCENAIV 274 (385)
T ss_pred CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccccc--chHHHHHHH---hhheeecccCceEE
Confidence 5999999999844211111000 000 0000 0111 112344 348888884 78999999999999
Q ss_pred EEec-cCCee-------------EEEeecCccceEEE--EEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCC----Chhh
Q 021484 174 IWKK-KGGKL-------------VRLMVGDRHVVNQL--EPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD----NAEK 233 (312)
Q Consensus 174 iwd~-~~~~~-------------~~~~~~~~~~v~~~--~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~----~~~~ 233 (312)
.|.. +-.+. +..+.-....|.-+ +|.|-+++||.|...|.|.+||++..+...... ....
T Consensus 275 ~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~ 354 (385)
T KOG1034|consen 275 CWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGS 354 (385)
T ss_pred EEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccc
Confidence 9986 21111 22333333445544 456778899999999999999999876532221 2234
Q ss_pred hhhhhccCCCCceeEEecCCceEEEEEe
Q 021484 234 IMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 234 ~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.+.-..++.++..|+....|+++--||.
T Consensus 355 tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 355 TVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred eeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 4555667889999999999999888873
No 144
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=9.5e-19 Score=133.67 Aligned_cols=169 Identities=14% Similarity=0.158 Sum_probs=135.2
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
+.+..+++++.|+.-+++++.+.+-|-+..|||++++.. ..+++.+..|...|..++|...+. ++|+
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~------------~~vkTQLIAHDKEV~DIaf~~~s~~~FAS 214 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS------------GTVKTQLIAHDKEVYDIAFLKGSRDVFAS 214 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccc------------cceeeEEEecCcceeEEEeccCccceEEE
Confidence 347899999999998889999999999999999998731 134555588999999999999775 7777
Q ss_pred -ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC-ceEEEEeccC-Cee
Q 021484 106 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-GHLFIWKKKG-GKL 182 (312)
Q Consensus 106 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d-g~v~iwd~~~-~~~ 182 (312)
|.||.+++||++... .....++......+...++|...+.+++|+-..| ..|.|.|++. +.+
T Consensus 215 vgaDGSvRmFDLR~le---------------HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 215 VGADGSVRMFDLRSLE---------------HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTP 279 (364)
T ss_pred ecCCCcEEEEEecccc---------------cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcc
Confidence 469999999998752 2233344333234588999955567788876554 4689999885 567
Q ss_pred EEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCC
Q 021484 183 VRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 183 ~~~~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~ 222 (312)
+..+++|.+.|+.++|.|... .++|++.|..+-+||+...
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred eehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 889999999999999999865 5999999999999998754
No 145
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=5.9e-19 Score=147.80 Aligned_cols=244 Identities=13% Similarity=0.146 Sum_probs=159.9
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCC---------C
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPIS---------S 71 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~ 71 (312)
+++||+........-. +-||...|.+++|.|.++..|++|+.||.|.|||++-..+....+ .
T Consensus 124 ~r~Wdvk~s~l~G~~~---------~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n 194 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRL---------NLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHN 194 (720)
T ss_pred eeeeeeccceeeccee---------ecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcccc
Confidence 5789988776544421 135899999999999999999999999999999998443111000 0
Q ss_pred C--CCcccccc-cccccCCCccEEE---EEEccCCCeEEEe-c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCc--eE
Q 021484 72 D--TPVDTFCP-RHLIGKNNIHITG---LAYSNTSELLISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ--VY 141 (312)
Q Consensus 72 ~--~~~~~~~~-~~~~~~~~~~i~~---~~~~~~~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~ 141 (312)
. .+...... ..-...+...|.+ +.+..|...||++ . |+.|+|||++.......+ +... .+
T Consensus 195 ~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~----------ep~~~~~~ 264 (720)
T KOG0321|consen 195 TAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQ----------EPRGSDKY 264 (720)
T ss_pred CCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccccc----------CCCcccCc
Confidence 0 11110000 0001234444554 5556677777774 4 999999999876311110 1111 11
Q ss_pred ecccC-CceeeEEEEecCCCCEEEEeccCceEEEEeccCC--eeEEEeecCcc-ce-EEEEEcCCCCeEEEEeCCCcEEE
Q 021484 142 SGHRN-SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KLVRLMVGDRH-VV-NQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 142 ~~~~~-~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~-~v-~~~~~~p~~~~l~t~~~d~~i~i 216 (312)
..+.. ...+.++.. +..|.+|++.+.|+.|++|++.+- .++..+.++.. .. ..-..+|++.++++|+.|....+
T Consensus 265 ~t~skrs~G~~nL~l-DssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayi 343 (720)
T KOG0321|consen 265 PTHSKRSVGQVNLIL-DSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYI 343 (720)
T ss_pred cCcccceeeeEEEEe-cCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceee
Confidence 12210 111566665 677899888888999999998753 23444443321 11 12346899999999999999999
Q ss_pred ccCCCCCC--CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 217 WAPMPTDF--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 217 wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
|.+...+. ..+.+|...+....|.+.+-.-+++++.|..+++|++...
T Consensus 344 w~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 344 WVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 99988763 5567888888777766667777888899999999998554
No 146
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=8.2e-19 Score=139.18 Aligned_cols=207 Identities=14% Similarity=0.095 Sum_probs=149.8
Q ss_pred ccccCCCccEEEEEEccCCC-eEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 82 HLIGKNNIHITGLAYSNTSE-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 82 ~~~~~~~~~i~~~~~~~~~~-~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
.+..+|.++|..++|+|... .||+|+ |.+|.||.+..+....... +++..+.+|... |.-+.|+...
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------epvv~L~gH~rr--Vg~V~wHPtA 143 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------EPVVELYGHQRR--VGLVQWHPTA 143 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc---------cceEEEeeccee--EEEEeecccc
Confidence 33489999999999999764 788875 9999999997652111111 567888999965 9999996556
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhh
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKAN 238 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~ 238 (312)
.+.|++++.|.+|.+|++.+|+.+.++. |...|+++.|+.+|.+|+|.+.|+.|||||.+++++ ..-.+|...-...+
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARA 222 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCccee
Confidence 7899999999999999999999988888 999999999999999999999999999999999985 22345555444444
Q ss_pred ccCCCCceeEEec---CCceEEEEEecccCcccee-Ee-ecCCCccC-CCCCCCeEEEeecCCCCCCC
Q 021484 239 KQGREDHSRITLT---PDVIMHVLRLQRRQTLAYR-ER-RYNAADFE-SDEEEGETYLLGFSDSDASS 300 (312)
Q Consensus 239 ~~~~~~~~l~s~~---~d~~i~i~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~v~~~~~~~~~~~~ 300 (312)
.+-.++.++.||- .+.++-+|+-..-+.+.-. +. ..++.-++ .+++...||+++=-|++...
T Consensus 223 ifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRY 290 (472)
T KOG0303|consen 223 IFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRY 290 (472)
T ss_pred EEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEE
Confidence 4555556444433 3577888875554433222 11 11222222 35666777888766665443
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2e-19 Score=149.62 Aligned_cols=228 Identities=15% Similarity=0.223 Sum_probs=166.8
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc---------------------------
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC--------------------------- 79 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--------------------------- 79 (312)
.||.+.|.+++.+|.| ..|++|+.||+|+||.+.++.++.....+..++...
T Consensus 397 rGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred eccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 5899999999999988 899999999999999999998875443222111000
Q ss_pred ----------------------------cc---------ccccCCCccEEEEEEccCCCeEEEec----CCcEEEEEcCC
Q 021484 80 ----------------------------PR---------HLIGKNNIHITGLAYSNTSELLISYN----DELVYLFEKNM 118 (312)
Q Consensus 80 ----------------------------~~---------~~~~~~~~~i~~~~~~~~~~~l~s~~----d~~i~iwd~~~ 118 (312)
.. .+...|...|..+.|+..|.||++.. ...|.|+++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 00 11234677899999999999999842 45689999876
Q ss_pred CcCCCCC-------------------------cCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEE
Q 021484 119 GLGPSPL-------------------------SLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF 173 (312)
Q Consensus 119 ~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~ 173 (312)
.....+. .+.+.++.++.+++.+.... ..|..++. +|.|.-|+.|+.|+.+.
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~--kwiS~msi-hp~GDnli~gs~d~k~~ 632 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGS--KWISSMSI-HPNGDNLILGSYDKKMC 632 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCC--eeeeeeee-cCCCCeEEEecCCCeeE
Confidence 5522111 11222233333333333222 45889998 89999999999999999
Q ss_pred EEeccC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC-------CCC---CCCCCCChhh----hhhhh
Q 021484 174 IWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-------PTD---FPPLPDNAEK----IMKAN 238 (312)
Q Consensus 174 iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~-------~~~---~~~~~~~~~~----~~~~~ 238 (312)
.+|+.- .++.++++.|...+++|+||+.-++|++|+.||++.|+--. ... +..+++|... ++..
T Consensus 633 WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~- 711 (733)
T KOG0650|consen 633 WFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDT- 711 (733)
T ss_pred EEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEee-
Confidence 999874 46788889999999999999999999999999999998522 222 2455666544 4443
Q ss_pred ccCCCCceeEEecCCceEEEE
Q 021484 239 KQGREDHSRITLTPDVIMHVL 259 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d~~i~i~ 259 (312)
.|++...+|++++.|+.+++|
T Consensus 712 ~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 712 IWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccCCCceEEecCCCceEEee
Confidence 478889999999999999998
No 148
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.4e-19 Score=160.61 Aligned_cols=210 Identities=16% Similarity=0.168 Sum_probs=160.3
Q ss_pred cceEEEEEcCCCCc---EEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe
Q 021484 31 IRLNAIVIDPRNPN---YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY 106 (312)
Q Consensus 31 ~~v~~~~~~p~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~ 106 (312)
.+-+.++|.+.+.. +|+.|..||.|-+||...-.- . ..+........|.+.|..+.|++... +||+|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~----~-----~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG 135 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA----N-----ASEEVLATKSKHTGPVLGLDFNPFQGNLLASG 135 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhcc----C-----cchHHHhhhcccCCceeeeeccccCCceeecc
Confidence 46789999987754 589999999999999875310 0 00011112278999999999999876 89997
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
+||.|.|||+.+. +....+........|.+++|.......|++++.+|.+.|||++..+++..
T Consensus 136 a~~geI~iWDlnn~----------------~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ 199 (1049)
T KOG0307|consen 136 ADDGEILIWDLNKP----------------ETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK 199 (1049)
T ss_pred CCCCcEEEeccCCc----------------CCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc
Confidence 5999999999875 22222222212234999999544577889999999999999998888877
Q ss_pred eecCcc--ceEEEEEcCCCCe-EEEEeCC---CcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEE
Q 021484 186 MVGDRH--VVNQLEPHPHIPM-FATCGIE---KTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMH 257 (312)
Q Consensus 186 ~~~~~~--~v~~~~~~p~~~~-l~t~~~d---~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 257 (312)
+..+.. .+..++|||+... +++++.| -.|.+||++--. ++.+.+|...++...|...|.+++++.+.|+.+.
T Consensus 200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii 279 (1049)
T KOG0307|consen 200 LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII 279 (1049)
T ss_pred cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCee
Confidence 765543 5789999999865 6666654 369999988654 5677889999999987777889999999999999
Q ss_pred EEEecccC
Q 021484 258 VLRLQRRQ 265 (312)
Q Consensus 258 i~~~~~~~ 265 (312)
.|+.++.+
T Consensus 280 ~wN~~tgE 287 (1049)
T KOG0307|consen 280 CWNPNTGE 287 (1049)
T ss_pred EecCCCce
Confidence 99987743
No 149
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.81 E-value=1.2e-17 Score=144.08 Aligned_cols=141 Identities=12% Similarity=0.149 Sum_probs=112.0
Q ss_pred eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-
Q 021484 149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF- 224 (312)
Q Consensus 149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~- 224 (312)
.+++++. ++.|++.+.|...|.|-+|++.+|-....+ +.|.++|++++....++.+++++.+|.+++||.....+
T Consensus 450 ~~~av~v-s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~ 528 (910)
T KOG1539|consen 450 NATAVCV-SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK 528 (910)
T ss_pred ceEEEEE-eccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence 4888988 999999999999999999999999888777 58999999999999999999999999999999764321
Q ss_pred -----------------------------------------CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 225 -----------------------------------------PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 225 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
..+.+|.+.+ ....++++++++++.+.|++|++||+.+
T Consensus 529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nri-td~~FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRI-TDMTFSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccce-eeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence 1222455555 3344788999999999999999999987
Q ss_pred cCcc---------ceeEeecCCCccCC-CCCCCeEEEe
Q 021484 264 RQTL---------AYRERRYNAADFES-DEEEGETYLL 291 (312)
Q Consensus 264 ~~~~---------~~~~~~~~~~~~~~-~~~~~~v~~~ 291 (312)
.... ....++|++..++. |.+...+|.|
T Consensus 608 ~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 608 GTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred cceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 6432 33477888888765 3444556665
No 150
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.81 E-value=9e-18 Score=138.62 Aligned_cols=198 Identities=8% Similarity=0.056 Sum_probs=134.6
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-C-Cc
Q 021484 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D-EL 110 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d-~~ 110 (312)
+..++|+|++..+++++..++.+++||+.+.+.+.. + . +...+..++|+|++++++++. + ..
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~--------------~-~-~~~~~~~~~~~~dg~~l~~~~~~~~~ 138 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE--------------I-P-VGVEPEGMAVSPDGKIVVNTSETTNM 138 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE--------------e-e-CCCCcceEEECCCCCEEEEEecCCCe
Confidence 467899999843445556789999999987653211 1 1 123357899999999888764 4 45
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe-ccCceEEEEeccCCeeEEEeecC
Q 021484 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVRLMVGD 189 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~ 189 (312)
+.+||..++ +....... ... ...++| ++++++|+++ ..++.|++||+.+++.+..+..+
T Consensus 139 ~~~~d~~~~----------------~~~~~~~~-~~~--~~~~~~-s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~ 198 (300)
T TIGR03866 139 AHFIDTKTY----------------EIVDNVLV-DQR--PRFAEF-TADGKELWVSSEIGGTVSVIDVATRKVIKKITFE 198 (300)
T ss_pred EEEEeCCCC----------------eEEEEEEc-CCC--ccEEEE-CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeec
Confidence 778898765 33333222 222 567888 8999988554 56999999999998877766422
Q ss_pred c-----c--ceEEEEEcCCCCeEE-EEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEe-cCCceEEEEE
Q 021484 190 R-----H--VVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITL-TPDVIMHVLR 260 (312)
Q Consensus 190 ~-----~--~v~~~~~~p~~~~l~-t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~i~~ 260 (312)
. . ....++|+|++++++ +.+.++.|.+||+++++......+...+ ....+++++.+++++ ..++.|++||
T Consensus 199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRV-WQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCc-ceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 1 1 234688999999854 4456778999999877653221122223 344577888888775 5689999999
Q ss_pred ecccCcc
Q 021484 261 LQRRQTL 267 (312)
Q Consensus 261 ~~~~~~~ 267 (312)
+......
T Consensus 278 ~~~~~~~ 284 (300)
T TIGR03866 278 VAALKVI 284 (300)
T ss_pred CCCCcEE
Confidence 8876543
No 151
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=1.5e-18 Score=146.57 Aligned_cols=222 Identities=15% Similarity=0.182 Sum_probs=165.9
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
+||.+.|++++|+|.| .+|++.+.|.+-|+|-.-..+. . +.......-|...++|+++-+....++++
T Consensus 358 SGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~--------~---wHEiaRPQiHGyDl~c~~~vn~~~~FVSg 425 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQ--------E---WHEIARPQIHGYDLTCLSFVNEDLQFVSG 425 (764)
T ss_pred ccccccceeeeecCCC-CEEEEeccccceeeeccccccc--------c---eeeecccccccccceeeehccCCceeeec
Confidence 6899999999999999 7999999999999987652220 0 11111225578889999999866677776
Q ss_pred -cCCcEEEEEcCCCc--------C---------C-----------CCCcCCc------c---------------------
Q 021484 107 -NDELVYLFEKNMGL--------G---------P-----------SPLSLSP------E--------------------- 130 (312)
Q Consensus 107 -~d~~i~iwd~~~~~--------~---------~-----------~~~~~~~------~--------------------- 130 (312)
.+..+|+|+..... + + +.-.++. .
T Consensus 426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 57788999976332 0 0 0000000 0
Q ss_pred -c----ccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-----CceEEEEeccCCeeEEEeecCccceEEEEEcC
Q 021484 131 -D----LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-----CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP 200 (312)
Q Consensus 131 -~----~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p 200 (312)
+ ..-...++.+.||... |.+++. +|+++++++++. ...|++|+..+-..+..+.+|.-.|+.++|||
T Consensus 506 EdqLq~~tLwPEv~KLYGHGyE--v~~l~~-s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGHGYE--VYALAI-SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP 582 (764)
T ss_pred HHHHHHhccchhhHHhccCcee--EEEEEe-cCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence 0 1112334556688866 999998 999999999875 34699999998888889999999999999999
Q ss_pred CCCeEEEEeCCCcEEEccCCCCCC-----CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 201 HIPMFATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 201 ~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
++++|++.+.|+++.+|....... .....|..-+..+. |++++.+++|++.|..+++|.....
T Consensus 583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcs-W~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCS-WSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcc-cCcccceeEEecCCceEEEEeccCc
Confidence 999999999999999999754432 22445666666555 7888888999999999999987654
No 152
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=5.9e-19 Score=136.24 Aligned_cols=233 Identities=7% Similarity=0.066 Sum_probs=161.3
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc-
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC- 79 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~- 79 (312)
|-+||+.+.+..+++. +|..+|++++||++| +.|+|++.|..|.+||+..+.+...+..+.|+....
T Consensus 47 vvI~D~~T~~iar~ls-----------aH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~ 114 (405)
T KOG1273|consen 47 VVIYDFDTFRIARMLS-----------AHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQW 114 (405)
T ss_pred EEEEEccccchhhhhh-----------ccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCceeEEEccCccceeee
Confidence 3467776665444444 488899999999999 899999999999999999998777666655542211
Q ss_pred --------ccccccC----------------------CCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCC
Q 021484 80 --------PRHLIGK----------------------NNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLS 128 (312)
Q Consensus 80 --------~~~~~~~----------------------~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~ 128 (312)
...++.. -........|.+.|+++.+| +.|.+.+++..+-
T Consensus 115 hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~--------- 185 (405)
T KOG1273|consen 115 HPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL--------- 185 (405)
T ss_pred ccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh---------
Confidence 0000000 00111122367778899998 6999999999886
Q ss_pred cccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC-------Cee--EEEee--cCccceEEEE
Q 021484 129 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-------GKL--VRLMV--GDRHVVNQLE 197 (312)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~-------~~~--~~~~~--~~~~~v~~~~ 197 (312)
+++..++-... ..|.++-+ +..|++|+.-+.|+.|+.|+++. +++ .+.++ ...-.-.+++
T Consensus 186 -------e~vas~rits~-~~IK~I~~-s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 186 -------ECVASFRITSV-QAIKQIIV-SRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred -------eeeeeeeechh-eeeeEEEE-eccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 67777765541 23889998 89999999999999999999762 111 11111 0122345788
Q ss_pred EcCCCCeEEEEe-CCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 198 PHPHIPMFATCG-IEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 198 ~~p~~~~l~t~~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
|+.+|.|+++++ ....++||.-..+.+ +.+.+.....+....|++-...+++. ..|.++||.....
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecc
Confidence 999999977766 556899999998886 44555554444444567766666666 7899999986543
No 153
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.80 E-value=1e-17 Score=135.32 Aligned_cols=205 Identities=13% Similarity=0.071 Sum_probs=147.6
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
+|..+|.++.|+|.+...+++.+.||+|++-|++...... +... ......+.++.|+.+...++.+
T Consensus 232 ~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~------------v~s~-~~d~~~fs~~d~~~e~~~vl~~~ 298 (498)
T KOG4328|consen 232 PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE------------VLSL-DTDNIWFSSLDFSAESRSVLFGD 298 (498)
T ss_pred cCCccccceEecCCChhheeeeccCceeeeeeecchhhHH------------Hhhc-CccceeeeeccccCCCccEEEee
Confidence 3899999999999888999999999999999998765210 0111 2234556778888877655554
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEeccCCe----
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWKKKGGK---- 181 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd~~~~~---- 181 (312)
.-|.+.+||++++. .....+.-|... |+++++ +| ...+|++++.|++++|||++.-.
T Consensus 299 ~~G~f~~iD~R~~~---------------s~~~~~~lh~kK--I~sv~~-NP~~p~~laT~s~D~T~kIWD~R~l~~K~s 360 (498)
T KOG4328|consen 299 NVGNFNVIDLRTDG---------------SEYENLRLHKKK--ITSVAL-NPVCPWFLATASLDQTAKIWDLRQLRGKAS 360 (498)
T ss_pred cccceEEEEeecCC---------------ccchhhhhhhcc--cceeec-CCCCchheeecccCcceeeeehhhhcCCCC
Confidence 56699999999862 234445556644 999999 55 46678999999999999987532
Q ss_pred eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC----CCCCCCCCCCh----h--hhhhhhccCCCCceeEEec
Q 021484 182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM----PTDFPPLPDNA----E--KIMKANKQGREDHSRITLT 251 (312)
Q Consensus 182 ~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~----~~~~~~~~~~~----~--~~~~~~~~~~~~~~l~s~~ 251 (312)
++.....|...|.++.|||.+..|+|.+.|..|+|||.. ..+......|. . ..++ +.|.++..+++.+.
T Consensus 361 p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fK-A~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 361 PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFK-AAWDPDYNLIVVGR 439 (498)
T ss_pred cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchh-heeCCCccEEEEec
Confidence 223334699999999999999889999999999999973 22221111121 1 1123 34777888888888
Q ss_pred CCceEEEEEeccc
Q 021484 252 PDVIMHVLRLQRR 264 (312)
Q Consensus 252 ~d~~i~i~~~~~~ 264 (312)
.-..|-+++-..+
T Consensus 440 ~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 440 YPRPIDVFDGNGG 452 (498)
T ss_pred cCcceeEEcCCCC
Confidence 8888888875443
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.80 E-value=2.3e-17 Score=128.18 Aligned_cols=239 Identities=13% Similarity=0.217 Sum_probs=170.2
Q ss_pred CCccceEEEEEcC----CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC---
Q 021484 28 MNSIRLNAIVIDP----RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--- 100 (312)
Q Consensus 28 ~h~~~v~~~~~~p----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--- 100 (312)
+|..+|..++|++ +.+..+++++. ..+.+|.....-.+ +.+ ....-..|.+....++|+-+.
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~i---------r~l-q~y~D~d~~Esfytcsw~yd~~~~ 104 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGI---------RLL-QSYADEDHDESFYTCSWSYDSNTG 104 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccce---------eee-eeccCCCCCcceEEEEEEecCCCC
Confidence 3788999999985 44467777765 56888887643211 111 111112466777788887643
Q ss_pred C-eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc
Q 021484 101 E-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 178 (312)
Q Consensus 101 ~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~ 178 (312)
. ++|.+ .-|.|+|.|+.++ +....+.+|... |..+.+++...+++++++.|..|++|+++
T Consensus 105 ~p~la~~G~~GvIrVid~~~~----------------~~~~~~~ghG~s--INeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSG----------------QCSKNYRGHGGS--INEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CeeEEeecceeEEEEEecchh----------------hhccceeccCcc--chhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 3 66665 5999999999988 788999999977 99999954456899999999999999999
Q ss_pred CCeeEEEe---ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-------CC---------CC-----------
Q 021484 179 GGKLVRLM---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-------PP---------LP----------- 228 (312)
Q Consensus 179 ~~~~~~~~---~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-------~~---------~~----------- 228 (312)
+..++..+ .+|...|.++.|+++|.++++++.|.+|++|++...+. .+ ++
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 99998887 47999999999999999999999999999999883221 00 11
Q ss_pred --CChhhhhhhhccCCCCceeEEecCCceEEEEEecc-cCc----------------------ccee---EeecCCCccC
Q 021484 229 --DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR-RQT----------------------LAYR---ERRYNAADFE 280 (312)
Q Consensus 229 --~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~-~~~----------------------~~~~---~~~~~~~~~~ 280 (312)
.|.+.+ .++.|- ++++++-+-++.|..|.... .+. .+|. .+.+....++
T Consensus 247 ~diHrnyV-DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la 323 (385)
T KOG1034|consen 247 TDIHRNYV-DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLA 323 (385)
T ss_pred cccccchH-HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHh
Confidence 011111 111111 46888888888999997511 100 0111 3445556677
Q ss_pred CCCCCCeEEEeecCCCCC
Q 021484 281 SDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 281 ~~~~~~~v~~~~~~~~~~ 298 (312)
.+.+.|.||++|++..+.
T Consensus 324 ~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hccCCCcEEEEECCCCCC
Confidence 888999999999977654
No 155
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=4e-18 Score=132.11 Aligned_cols=205 Identities=14% Similarity=0.142 Sum_probs=152.9
Q ss_pred ccceEEEEEc-------CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCC---ccEEEEEEccC
Q 021484 30 SIRLNAIVID-------PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN---IHITGLAYSNT 99 (312)
Q Consensus 30 ~~~v~~~~~~-------p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~ 99 (312)
...|+..+|- |+. +++|+.+.+.-|++||.-++++...... ..|. ....+++|+||
T Consensus 104 g~tvydy~wYs~M~s~qP~t-~l~a~ssr~~PIh~wdaftG~lraSy~~-------------ydh~de~taAhsL~Fs~D 169 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPST-NLFAVSSRDQPIHLWDAFTGKLRASYRA-------------YDHQDEYTAAHSLQFSPD 169 (406)
T ss_pred CCEEEEEEeeeccccCCCcc-ceeeeccccCceeeeeccccccccchhh-------------hhhHHhhhhheeEEecCC
Confidence 4467777775 555 7999999999999999999986432211 1222 23568999999
Q ss_pred CCeEEEecCCcEEEEEc-CCCcCCCCCcCCcccccCCCCCceE----ecccCCceeeEEEEecCC-CCEEEEeccCceEE
Q 021484 100 SELLISYNDELVYLFEK-NMGLGPSPLSLSPEDLQKREEPQVY----SGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLF 173 (312)
Q Consensus 100 ~~~l~s~~d~~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~ 173 (312)
|.+|.++-...|++||+ +.+.. . ....++ .+.. ..+.+++| +|. ...++.|+....+-
T Consensus 170 GeqlfaGykrcirvFdt~RpGr~-c------------~vy~t~~~~k~gq~--giisc~a~-sP~~~~~~a~gsY~q~~g 233 (406)
T KOG2919|consen 170 GEQLFAGYKRCIRVFDTSRPGRD-C------------PVYTTVTKGKFGQK--GIISCFAF-SPMDSKTLAVGSYGQRVG 233 (406)
T ss_pred CCeEeecccceEEEeeccCCCCC-C------------cchhhhhccccccc--ceeeeeec-cCCCCcceeeecccceee
Confidence 99999999999999999 44410 0 000111 1122 34889999 665 55899999999999
Q ss_pred EEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCC--CCCCCCChhhhhhhhc--cCCCCceeE
Q 021484 174 IWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD--FPPLPDNAEKIMKANK--QGREDHSRI 248 (312)
Q Consensus 174 iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~l~ 248 (312)
|+.-..+.++..+-+|.+.|+.+.|+++|+.|.+|. .|-.|-.||++... +..+..|....-.... ..+.+++|+
T Consensus 234 iy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~La 313 (406)
T KOG2919|consen 234 IYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILA 313 (406)
T ss_pred eEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceee
Confidence 999888999999999999999999999999999988 68899999998654 3444444442222222 345789999
Q ss_pred EecCCceEEEEEeccc
Q 021484 249 TLTPDVIMHVLRLQRR 264 (312)
Q Consensus 249 s~~~d~~i~i~~~~~~ 264 (312)
+|+.+|.|++||++..
T Consensus 314 sG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 314 SGDTDGSVRVWDLKDL 329 (406)
T ss_pred ccCCCccEEEEecCCC
Confidence 9999999999999874
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=140.01 Aligned_cols=218 Identities=13% Similarity=0.204 Sum_probs=165.1
Q ss_pred eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccc
Q 021484 2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR 81 (312)
Q Consensus 2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
+.||+.+.+..++-.....+ ...+..+..+|++ ++|+..+..|.|.+.-..+++++.. +
T Consensus 283 ysyDle~ak~~k~~~~~g~e--------~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s---------~--- 341 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPYGVE--------EKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITS---------F--- 341 (514)
T ss_pred EEeeccccccccccCCCCcc--------cchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhhe---------e---
Confidence 57888776644443332111 2356678889998 7999999999999999998875422 1
Q ss_pred ccccCCCccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC
Q 021484 82 HLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 160 (312)
Q Consensus 82 ~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~ 160 (312)
.-.+.|..++|+.+++.|.+ +++|.|++||++.. .++..+..... -.-++++. ++++
T Consensus 342 ----KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~----------------~~~~rf~D~G~-v~gts~~~-S~ng 399 (514)
T KOG2055|consen 342 ----KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN----------------SCLHRFVDDGS-VHGTSLCI-SLNG 399 (514)
T ss_pred ----eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc----------------ceEEEEeecCc-cceeeeee-cCCC
Confidence 12567899999999985554 67999999999987 67777764433 22466776 8999
Q ss_pred CEEEEeccCceEEEEeccC------CeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEccCCCCCC-CCCCCCh
Q 021484 161 EYVMSGSDCGHLFIWKKKG------GKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTDF-PPLPDNA 231 (312)
Q Consensus 161 ~~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~--~d~~i~iwd~~~~~~-~~~~~~~ 231 (312)
.|||+|+..|.|.|||.++ .+++..+..-...|++++|+|+.++||.+| ....+|+-.+.+... ..++...
T Consensus 400 ~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n 479 (514)
T KOG2055|consen 400 SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN 479 (514)
T ss_pred ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC
Confidence 9999999999999999653 466777766677899999999999988777 567899988877764 3444322
Q ss_pred h--hhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 232 E--KIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 232 ~--~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
. .-+.+..+++.+.+++.|..++.+.+|.+.
T Consensus 480 ~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 480 TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 2 224666788999999999999999999875
No 157
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=3.8e-17 Score=140.85 Aligned_cols=269 Identities=15% Similarity=0.162 Sum_probs=178.0
Q ss_pred CeeecccCc-cceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021484 1 MWQFDLRSD-SATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 1 v~~wd~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 79 (312)
+.+|+++.+ .+...+.+ +..|++++|+|..+++++.|+.+|.|.+||++.+... + .. .
T Consensus 224 ~~vW~~~~p~~Pe~~~~~------------~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-------~-~s-~ 282 (555)
T KOG1587|consen 224 LLVWSLKNPNTPELVLES------------PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-------P-PS-G 282 (555)
T ss_pred EEEEecCCCCCceEEEec------------CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-------C-Cc-c
Confidence 368999877 23333333 4579999999999999999999999999999977621 0 11 2
Q ss_pred ccccccCCCccEEEEEEccCCC--eEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe
Q 021484 80 PRHLIGKNNIHITGLAYSNTSE--LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF 156 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~--~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 156 (312)
.......|..+++.+.|..+.. -+++ +.||.|..|+++.-..|....+..... +....+. .. ..+++++|.
T Consensus 283 ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~---~~~~~~~-~~--~~~t~~~F~ 356 (555)
T KOG1587|consen 283 LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK---HKGQQSS-KA--VGATSLKFE 356 (555)
T ss_pred cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc---ccccccc-cc--cceeeEeec
Confidence 2233367899999999987553 2555 579999999887653221111100000 0000011 11 228899995
Q ss_pred cCCCCEEEEeccCceEEEEeccC---C-----eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC-CCC-CCC
Q 021484 157 GPNDEYVMSGSDCGHLFIWKKKG---G-----KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PTD-FPP 226 (312)
Q Consensus 157 s~~~~~l~~~~~dg~v~iwd~~~---~-----~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~-~~~-~~~ 226 (312)
..+...++.|+++|.|.--+... + +....+..|.++|+.+.++|-+..++..+.|.+++||.-. ... +..
T Consensus 357 ~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~ 436 (555)
T KOG1587|consen 357 PTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLS 436 (555)
T ss_pred cCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchh
Confidence 55677899999999998744322 2 1233455688999999999998775444449999999976 333 333
Q ss_pred CCCChhhhhhhhccCC-CCceeEEecCCceEEEEEecccCcc------------ceeEeecCCCccCCCCCCCeEEEeec
Q 021484 227 LPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTL------------AYRERRYNAADFESDEEEGETYLLGF 293 (312)
Q Consensus 227 ~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~v~~~~~ 293 (312)
+..+...+ ....|++ ....++++..+|.+.+||+...... -..-+++.+..++.++..|.++++++
T Consensus 437 ~~~~~~~v-~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 437 LDSSPDYV-TDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred hhhcccee-eeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 43344444 4455666 5677888889999999998654211 11133445777888899999999988
Q ss_pred CCCC
Q 021484 294 SDSD 297 (312)
Q Consensus 294 ~~~~ 297 (312)
+++-
T Consensus 516 ~~~l 519 (555)
T KOG1587|consen 516 SESL 519 (555)
T ss_pred Cchh
Confidence 6553
No 158
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1e-17 Score=135.43 Aligned_cols=202 Identities=10% Similarity=0.156 Sum_probs=153.9
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-c
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-N 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~ 107 (312)
.++|+++.|||.. .++++++.|+.++||.+....- ..+++. .-...+|.+.+|.|+|+ .++++ .
T Consensus 213 ~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~N-------~~lqS~------~l~~fPi~~a~f~p~G~~~i~~s~r 278 (514)
T KOG2055|consen 213 HGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKVN-------PKLQSI------HLEKFPIQKAEFAPNGHSVIFTSGR 278 (514)
T ss_pred cCCceEEEecCCC-ceEEEecCCCcEEEEEecCccC-------hhheee------eeccCccceeeecCCCceEEEeccc
Confidence 4789999999988 6999999999999999975431 111111 22356899999999998 66665 5
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 187 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 187 (312)
...++.||+.+.+ ...+....++.. ..+..... ++++++|+..+..|.|.+....+++.+..++
T Consensus 279 rky~ysyDle~ak--------------~~k~~~~~g~e~-~~~e~FeV-Shd~~fia~~G~~G~I~lLhakT~eli~s~K 342 (514)
T KOG2055|consen 279 RKYLYSYDLETAK--------------VTKLKPPYGVEE-KSMERFEV-SHDSNFIAIAGNNGHIHLLHAKTKELITSFK 342 (514)
T ss_pred ceEEEEeeccccc--------------cccccCCCCccc-chhheeEe-cCCCCeEEEcccCceEEeehhhhhhhhheee
Confidence 8899999998761 112223333332 23566666 8999999999999999999999999998887
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 188 ~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
-.+.|..++|+.+++.|++++.+|.|.+||++...+ ..+.....---...+.+.++.++++|+..|.+.|++.+
T Consensus 343 -ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 343 -IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred -eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 457899999999999999999999999999998764 33332222222333456688899999999999999854
No 159
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=2.3e-18 Score=144.52 Aligned_cols=206 Identities=13% Similarity=0.191 Sum_probs=153.3
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEEe-c
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISY-N 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~-~ 107 (312)
...|+++.|+|.....||+++.||.|++|.+..+.+... ...+..++..|...|+++.|+|-. ..|+++ .
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~--------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asy 698 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN--------EMTPEKILTIHGEKITSLRFHPLAADVLAVASY 698 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc--------cCCcceeeecccceEEEEEecchhhhHhhhhhc
Confidence 557999999998879999999999999999987653211 224555668999999999999965 477775 5
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-eEEEe
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRLM 186 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~ 186 (312)
|.+|++||+.+. +....+.+|.+. |.+++| +|+|+.+++.+.||+|++|..++++ ++..-
T Consensus 699 d~Ti~lWDl~~~----------------~~~~~l~gHtdq--If~~AW-SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg 759 (1012)
T KOG1445|consen 699 DSTIELWDLANA----------------KLYSRLVGHTDQ--IFGIAW-SPDGRRIATVCKDGTLRVYEPRSREQPVYEG 759 (1012)
T ss_pred cceeeeeehhhh----------------hhhheeccCcCc--eeEEEE-CCCCcceeeeecCceEEEeCCCCCCCccccC
Confidence 999999999988 788889999987 999999 9999999999999999999988664 33332
Q ss_pred ecCc-cceEEEEEcCCCCeEEEEeCC----CcEEEccCCCCCCCCCC-----CChhhhhhhhccCC-CCceeEEecCCce
Q 021484 187 VGDR-HVVNQLEPHPHIPMFATCGIE----KTVKLWAPMPTDFPPLP-----DNAEKIMKANKQGR-EDHSRITLTPDVI 255 (312)
Q Consensus 187 ~~~~-~~v~~~~~~p~~~~l~t~~~d----~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~l~s~~~d~~ 255 (312)
++.- .+-..+.|.-+|++++..+.| +.|.+||.++-....+. ......+. .... .+.++++|-.|..
T Consensus 760 ~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP--~YD~Ds~~lfltGKGD~~ 837 (1012)
T KOG1445|consen 760 KGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVP--HYDYDSNVLFLTGKGDRF 837 (1012)
T ss_pred CCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccc--cccCCCceEEEecCCCce
Confidence 2211 223457788899998777755 57899997765432221 11111111 1222 3456778888999
Q ss_pred EEEEEeccc
Q 021484 256 MHVLRLQRR 264 (312)
Q Consensus 256 i~i~~~~~~ 264 (312)
+.++.+-..
T Consensus 838 v~~yEv~~e 846 (1012)
T KOG1445|consen 838 VNMYEVIYE 846 (1012)
T ss_pred EEEEEecCC
Confidence 999987543
No 160
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=3.6e-18 Score=141.24 Aligned_cols=218 Identities=11% Similarity=0.187 Sum_probs=163.4
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~- 107 (312)
|-..|++++|+|.. -.|++++.||+|++|++.... ......-.|+-+| .+|.++|.|+++.++++.+.+++
T Consensus 293 ~~d~ir~l~~~~se-p~lit~sed~~lk~WnLqk~~-~s~~~~~epi~tf------raH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 293 HDDCIRALAFHPSE-PVLITASEDGTLKLWNLQKAK-KSAEKDVEPILTF------RAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred chhhhhhhhcCCCC-CeEEEeccccchhhhhhcccC-CccccceeeeEEE------ecccCceEEEEecCCceEEEeecc
Confidence 77889999999988 589999999999999994311 1111112233333 89999999999999999999975
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE---
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR--- 184 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~--- 184 (312)
||+|+.|++.....+.+. .........+.||... ++.+++ +.....|++++.||+++.|......+..
T Consensus 365 Dg~I~~w~~p~n~dp~ds------~dp~vl~~~l~Ghtda--vw~l~~-s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~ 435 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDS------YDPSVLSGTLLGHTDA--VWLLAL-SSTKDRLLSCSSDGTVRLWEPTEESPCTFGE 435 (577)
T ss_pred CceeeeeccCCCCCcccc------cCcchhccceeccccc--eeeeee-cccccceeeecCCceEEeeccCCcCccccCC
Confidence 999999988643222111 1111355678899977 999999 8888899999999999999865332200
Q ss_pred -----------------------------------------Eeec-------CccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484 185 -----------------------------------------LMVG-------DRHVVNQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 185 -----------------------------------------~~~~-------~~~~v~~~~~~p~~~~l~t~~~d~~i~i 216 (312)
.+.. ....+..+.++|.+...+++..|+.|++
T Consensus 436 ~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRF 515 (577)
T ss_pred ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceec
Confidence 1100 0124667889999999999999999999
Q ss_pred ccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 217 WAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 217 wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
+|..++++ .....|...+ +...+.+++.+|++++.|+.+++|++...
T Consensus 516 ~dn~~~~~l~s~~a~~~sv-tslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 516 FDNKTGKILHSMVAHKDSV-TSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccccccchheeecccee-cceeecCCCceEEeecCCceeehhhccch
Confidence 99999885 5555555555 55668889999999999999999987544
No 161
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.8e-17 Score=126.01 Aligned_cols=233 Identities=10% Similarity=0.104 Sum_probs=155.5
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc--cccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF--CPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
..+.++|.|+-..+++......++++|.+...+- ...+.... ....+...|...+..+-...++++|+++ .|
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d-----G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d 208 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD-----GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD 208 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeeccc-----CCCCcccccccccccchhcccceEEEeecCCceEEEEecCC
Confidence 4678899999867777777888999999875441 11111111 1112335567777777777778899997 59
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc---CC-----
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---GG----- 180 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~---~~----- 180 (312)
..|.+|++.. +.+..+...... -...+. +|+|+++++++..-.|++|.+- .|
T Consensus 209 t~i~lw~lkG-----------------q~L~~idtnq~~--n~~aav-SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev 268 (420)
T KOG2096|consen 209 TKICLWDLKG-----------------QLLQSIDTNQSS--NYDAAV-SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEV 268 (420)
T ss_pred CcEEEEecCC-----------------ceeeeecccccc--ccceee-CCCCcEEEEecCCCCceEEEEEeccCcchhhh
Confidence 9999999984 466666555433 455666 9999999999999999999853 22
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC-----CCCCCC-------CChhhhhhhhccCCCCceeE
Q 021484 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT-----DFPPLP-------DNAEKIMKANKQGREDHSRI 248 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~~l~ 248 (312)
+.+..+++|...|..++|+|+...++|.+.||++||||+.-. ....+. ......+ ....+|++. .+
T Consensus 269 ~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~-~l 346 (420)
T KOG2096|consen 269 KRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGD-SL 346 (420)
T ss_pred hhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCc-EE
Confidence 345678899999999999999999999999999999997532 121111 1111111 222344444 44
Q ss_pred EecCCceEEEEEecccCc-----------cceeEeecCCCccCCCCCCCeEEEee
Q 021484 249 TLTPDVIMHVLRLQRRQT-----------LAYRERRYNAADFESDEEEGETYLLG 292 (312)
Q Consensus 249 s~~~d~~i~i~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~~~ 292 (312)
+.+....++++....++. +..+.+.+++..+++..+. .+.++.
T Consensus 347 A~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr-~vrv~~ 400 (420)
T KOG2096|consen 347 AVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDR-YVRVIR 400 (420)
T ss_pred EeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecce-eeeeec
Confidence 556677788887655432 2233566666666665443 344444
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=7.2e-18 Score=137.64 Aligned_cols=199 Identities=12% Similarity=0.193 Sum_probs=155.0
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-CCcEE
Q 021484 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVY 112 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~ 112 (312)
.|++..... .++++|+..+.|+|||++.+. +.+ .+.+|...|+++.++-...+||+.+ .|.|.
T Consensus 83 ~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~~kl--------------~hr-~lkdh~stvt~v~YN~~DeyiAsvs~gGdii 146 (673)
T KOG4378|consen 83 FCVACASQS-LYEISGGQSGCVKIWDLRAKL--------------IHR-FLKDHQSTVTYVDYNNTDEYIASVSDGGDII 146 (673)
T ss_pred HHHhhhhcc-eeeeccCcCceeeehhhHHHH--------------Hhh-hccCCcceeEEEEecCCcceeEEeccCCcEE
Confidence 345544554 689999999999999999553 223 3389999999999999999999975 88999
Q ss_pred EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCE-EEEeccCceEEEEeccCCeeEEEe-ecCc
Q 021484 113 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVRLM-VGDR 190 (312)
Q Consensus 113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~-~~~~ 190 (312)
|..+.++ .....|... ....|.-+.| ++..+. |.+++.+|.|.+||+....++..+ ..|.
T Consensus 147 ih~~~t~----------------~~tt~f~~~-sgqsvRll~y-s~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~Hs 208 (673)
T KOG4378|consen 147 IHGTKTK----------------QKTTTFTID-SGQSVRLLRY-SPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHS 208 (673)
T ss_pred EEecccC----------------ccccceecC-CCCeEEEeec-ccccceeeEeeccCCeEEEEeccCCCcccchhhhcc
Confidence 9999887 444455433 2234778999 777665 568899999999999887777665 5799
Q ss_pred cceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021484 191 HVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 191 ~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
.+...++|+|.... |++.+.|+.|.+||.+.+......... ..+....+..++.+|++|+..|.+..+|++....+
T Consensus 209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~-~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS-HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred CCcCcceecCCccceEEEecccceEEEeecccccccceeeec-CCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 99999999997764 899999999999999987643222122 23355568889999999999999999999876444
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.78 E-value=7.6e-18 Score=141.45 Aligned_cols=197 Identities=16% Similarity=0.166 Sum_probs=142.7
Q ss_pred cEEEE--EeCCCeEEEEEccCC-eecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEE-ecCCcEEEEEcCC
Q 021484 44 NYFAV--GGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YNDELVYLFEKNM 118 (312)
Q Consensus 44 ~~l~~--~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d~~i~iwd~~~ 118 (312)
..+|+ .+.-|.|-||+++.- ++- .. ....+ -....|+.+.|.|-. +.|+. +.||.|++|.+..
T Consensus 592 ~rvAVPL~g~gG~iai~el~~PGrLP---------Dg-v~p~l--~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 592 KRVAVPLAGSGGVIAIYELNEPGRLP---------DG-VMPGL--FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTA 659 (1012)
T ss_pred ceEEEEecCCCceEEEEEcCCCCCCC---------cc-ccccc--ccCceeeecccCCCChHHeeecccCceEEEEEecc
Confidence 34444 456799999999743 210 00 11111 125679999999955 56666 5799999999987
Q ss_pred CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEE
Q 021484 119 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 198 (312)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~ 198 (312)
+..+... ..+...+..|... |+++.|+......|++++.|-+|++||+++++....+.+|++.|.+++|
T Consensus 660 ~gl~e~~---------~tPe~~lt~h~eK--I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AW 728 (1012)
T KOG1445|consen 660 NGLPENE---------MTPEKILTIHGEK--ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAW 728 (1012)
T ss_pred CCCCccc---------CCcceeeecccce--EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEE
Confidence 6433221 1455678888865 9999996667889999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeCCCcEEEccCCCCCCC--CCCCChhhhhhhhccCCCCceeEEecCC----ceEEEEEecc
Q 021484 199 HPHIPMFATCGIEKTVKLWAPMPTDFP--PLPDNAEKIMKANKQGREDHSRITLTPD----VIMHVLRLQR 263 (312)
Q Consensus 199 ~p~~~~l~t~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~~d----~~i~i~~~~~ 263 (312)
+|+|+.+|+.+.||+|++|+.++.+.. .-.+....--....|..++++++..+.| ..+.+++.+.
T Consensus 729 SpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 729 SPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 999999999999999999999987632 2222222222233456677887776665 4566776544
No 164
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.78 E-value=1e-16 Score=131.25 Aligned_cols=233 Identities=14% Similarity=0.230 Sum_probs=166.9
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
...|....|+|.+++++++.+. +.+.+|+++.+.+.+. ...| .......|.+++|.++|..+..-++|
T Consensus 200 ne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~------~~~f-----ek~ekk~Vl~v~F~engdviTgDS~G 267 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKR------QGIF-----EKREKKFVLCVTFLENGDVITGDSGG 267 (626)
T ss_pred cceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEE------eecc-----ccccceEEEEEEEcCCCCEEeecCCc
Confidence 3468899999999778877765 8999999987764321 0111 12223679999999999876666899
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee-------
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL------- 182 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~------- 182 (312)
.|.||+..+. +..+....|... |.+++. -.+|.+| +|+.|..|..||-.-.+.
T Consensus 268 ~i~Iw~~~~~----------------~~~k~~~aH~gg--v~~L~~-lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe 327 (626)
T KOG2106|consen 268 NILIWSKGTN----------------RISKQVHAHDGG--VFSLCM-LRDGTLL-SGGKDRKIILWDDNYRKLRETELPE 327 (626)
T ss_pred eEEEEeCCCc----------------eEEeEeeecCCc--eEEEEE-ecCccEe-ecCccceEEeccccccccccccCch
Confidence 9999999776 555656688876 999998 6677655 599999999999321100
Q ss_pred ----E-----------------------------EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCC
Q 021484 183 ----V-----------------------------RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPD 229 (312)
Q Consensus 183 ----~-----------------------------~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~ 229 (312)
+ ....+|......++.+|+...++|++.|+.+++|+-..-+....
T Consensus 328 ~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~-- 405 (626)
T KOG2106|consen 328 QFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKI-- 405 (626)
T ss_pred hcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEE--
Confidence 0 03346777788899999999999999999999999221111111
Q ss_pred ChhhhhhhhccCCCCceeEEecCCceEEEEEeccc---------CccceeEeecCCCccCCCCCCCeEEEeecCCCCC
Q 021484 230 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR---------QTLAYRERRYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
......++.+++.+ .++.|+..|...+.|..+. ..+....++|++..++.+..++.+|++.++.+..
T Consensus 406 -~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 406 -IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred -ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence 11122344466766 7888888888888886543 2333347889999999998898999998876544
No 165
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.8e-17 Score=125.32 Aligned_cols=203 Identities=15% Similarity=0.212 Sum_probs=137.8
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEc-CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVID-PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 79 (312)
|+|||.++.... +.+. ..|..|.+.|..+.|- |.-++.+|+++.|+++.||.-...+. +.+-+...
T Consensus 37 vkI~d~~~~s~~--W~~T-----s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~------~~~~~~Wv 103 (361)
T KOG2445|consen 37 VKIWDSTSDSGT--WSCT-----SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE------EAHGRRWV 103 (361)
T ss_pred EEEEeccCCCCc--eEEe-----eeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc------ccccceeE
Confidence 578887554432 2221 1123489999999994 54348999999999999998753321 11122222
Q ss_pred ccccccCCCccEEEEEEccCC--CeEEEe-cCCcEEEEEcCCCcC----------------C--CC--------------
Q 021484 80 PRHLIGKNNIHITGLAYSNTS--ELLISY-NDELVYLFEKNMGLG----------------P--SP-------------- 124 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~~----------------~--~~-------------- 124 (312)
....+......|+.+.|.|.. ..+|++ .||.+|||+...... + +.
T Consensus 104 ~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~ 183 (361)
T KOG2445|consen 104 RRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH 183 (361)
T ss_pred EEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecccccc
Confidence 333446667899999999965 477776 699999999754320 0 00
Q ss_pred ---------------CcCCccc----ccCCCCCceEecccCCceeeEEEEecCC----CCEEEEeccCceEEEEeccCC-
Q 021484 125 ---------------LSLSPED----LQKREEPQVYSGHRNSQTVKGVNFFGPN----DEYVMSGSDCGHLFIWKKKGG- 180 (312)
Q Consensus 125 ---------------~~~~~~~----~~~~~~~~~~~~~~~~~~v~~v~~~s~~----~~~l~~~~~dg~v~iwd~~~~- 180 (312)
....++. ..+...+..+.+|..+ |++++| .|+ -.+||+++.|| |+||.+...
T Consensus 184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp--I~di~w-APn~Gr~y~~lAvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 184 EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP--IRDISW-APNIGRSYHLLAVATKDG-VRIFKVKVAR 259 (361)
T ss_pred CceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc--ceeeee-ccccCCceeeEEEeecCc-EEEEEEeecc
Confidence 0000000 1223334445567755 999999 775 35789999999 999998631
Q ss_pred -------------------eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484 181 -------------------KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 181 -------------------~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
+.+..+..|.+.|..+.|+-.|..|++.|.||.||+|...
T Consensus 260 s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 260 SAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred chhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 2345667899999999999999999999999999999743
No 166
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=2e-17 Score=136.93 Aligned_cols=186 Identities=18% Similarity=0.271 Sum_probs=138.2
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc---cccccccCCCccEEEEEEccCCCeE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF---CPRHLIGKNNIHITGLAYSNTSELL 103 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l 103 (312)
.+|.++|.|++..+++ ..+++|+.||+|+.|++.... .+...+ .....+.+|.+.++.+++++....|
T Consensus 341 raH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~--------dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~L 411 (577)
T KOG0642|consen 341 RAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQ--------DPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRL 411 (577)
T ss_pred ecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCC--------CcccccCcchhccceeccccceeeeeecccccce
Confidence 4699999999999998 899999999999999887221 111111 2334457999999999999988888
Q ss_pred EEe-cCCcEEEEEcCCCcC-----CCCCc-----------------------CCcccccCCCCCceEeccc-----CCce
Q 021484 104 ISY-NDELVYLFEKNMGLG-----PSPLS-----------------------LSPEDLQKREEPQVYSGHR-----NSQT 149 (312)
Q Consensus 104 ~s~-~d~~i~iwd~~~~~~-----~~~~~-----------------------~~~~~~~~~~~~~~~~~~~-----~~~~ 149 (312)
+++ .||++++|+...... +.... ..+.++......+.+.... ....
T Consensus 412 lscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~ 491 (577)
T KOG0642|consen 412 LSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ 491 (577)
T ss_pred eeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence 887 599999999865431 00000 0000111111122221111 1122
Q ss_pred eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484 150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
+..+.+ .|.+.+.+++..|+.|+++|..+++++.....|...++++++.|+|.+|++++.|+.+++|.+...
T Consensus 492 in~vVs-~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 492 INKVVS-HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cceEEe-cCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 566776 788999999999999999999999999999999999999999999999999999999999998654
No 167
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=7.7e-18 Score=143.15 Aligned_cols=176 Identities=14% Similarity=0.239 Sum_probs=132.9
Q ss_pred CCccceEEEEEcC--CCCcEEEEEeCCCeEEEEEccCCe-ecCCCCC-CCCc-------------------------ccc
Q 021484 28 MNSIRLNAIVIDP--RNPNYFAVGGSDEYARVYDIRKCH-WYSPISS-DTPV-------------------------DTF 78 (312)
Q Consensus 28 ~h~~~v~~~~~~p--~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~-~~~~-------------------------~~~ 78 (312)
.|...|.|+.|+. .+..+||+++.|+-|.+||+...- +..+... ...+ +.+
T Consensus 499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~ 578 (1080)
T KOG1408|consen 499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVN 578 (1080)
T ss_pred cccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehh
Confidence 4889999999985 233689999999999999986332 2211111 0000 000
Q ss_pred c---cccccc-----CCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC-c
Q 021484 79 C---PRHLIG-----KNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS-Q 148 (312)
Q Consensus 79 ~---~~~~~~-----~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 148 (312)
. ...++. .....++.++..|..++++++ .|..|+||++.++ +..+.|++..+. +
T Consensus 579 qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg----------------Kq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 579 QKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG----------------KQVKSFKGSRDHEG 642 (1080)
T ss_pred ccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc----------------ceeeeecccccCCC
Confidence 0 000001 113456777777877777774 6888999998888 788888865432 3
Q ss_pred eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484 149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
....+.. +|.|.||++.+.|.++.++|+.+++++.++.+|...|+.+.|.++.++|++.+.||.|.||.+.
T Consensus 643 ~lIKv~l-DPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 643 DLIKVIL-DPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ceEEEEE-CCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 4667777 9999999999999999999999999999999999999999999999999999999999999875
No 168
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.3e-16 Score=134.68 Aligned_cols=216 Identities=14% Similarity=0.189 Sum_probs=160.5
Q ss_pred eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccc
Q 021484 2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR 81 (312)
Q Consensus 2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 81 (312)
--||+.+.++...+.+ ..+.|.+++.+|.+ ..++.|+.||.+..++...+.+ .-.
T Consensus 93 ~EwDl~~lk~~~~~d~-----------~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I-------------~~~ 147 (691)
T KOG2048|consen 93 TEWDLHTLKQKYNIDS-----------NGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKI-------------TYK 147 (691)
T ss_pred EEEecccCceeEEecC-----------CCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceE-------------EEE
Confidence 3588877665444433 35689999999988 8999999999888888776653 222
Q ss_pred ccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCce-----Eeccc-CCceeeEEE
Q 021484 82 HLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-----YSGHR-NSQTVKGVN 154 (312)
Q Consensus 82 ~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~v~~v~ 154 (312)
..+....+.+.+++|+|++..+++| .||.|++||..++ ..+.. ..... ...-|.++.
T Consensus 148 r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~----------------~t~~~~~~~~d~l~k~~~~iVWSv~ 211 (691)
T KOG2048|consen 148 RSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSG----------------QTLHIITMQLDRLSKREPTIVWSVL 211 (691)
T ss_pred eecccccceEEEEEecCCccEEEecccCceEEEEEcCCC----------------ceEEEeeecccccccCCceEEEEEE
Confidence 3334557899999999999988887 5999999999876 22221 11111 122378888
Q ss_pred EecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-----CCCCC
Q 021484 155 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-----PPLPD 229 (312)
Q Consensus 155 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~ 229 (312)
|. ....|++|..-|+|.+||...+..+..+..|.+.|.+++..+++..+++++.|+.|.-|...+..- .....
T Consensus 212 ~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~ 289 (691)
T KOG2048|consen 212 FL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL 289 (691)
T ss_pred Ee--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccC
Confidence 73 566799999999999999999999999999999999999999999999999999999988776531 22223
Q ss_pred ChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 230 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
|...+-..+.. +..+++++.|..+.+-.+..
T Consensus 290 h~hdvrs~av~---~~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 290 HAHDVRSMAVI---ENALISGGRDFTLAICSSRE 320 (691)
T ss_pred Ccccceeeeee---cceEEecceeeEEEEccccc
Confidence 44444333222 23889999999888876554
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5.4e-17 Score=126.71 Aligned_cols=192 Identities=14% Similarity=0.225 Sum_probs=138.7
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC--CCeEEEe-cCCcEEEEEcCCCc
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISY-NDELVYLFEKNMGL 120 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~-~d~~i~iwd~~~~~ 120 (312)
..+|++.++|.|++||..+++.. ..+ +++...+..++|... ...+.++ .||+|++||++...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l--------------~~f-k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~ 105 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLL--------------EEF-KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA 105 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhh--------------hee-cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch
Confidence 57899999999999999998732 222 677777888888774 4566665 69999999998862
Q ss_pred CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc----CceEEEEeccCCee-EEEe-ecCccceE
Q 021484 121 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----CGHLFIWKKKGGKL-VRLM-VGDRHVVN 194 (312)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~----dg~v~iwd~~~~~~-~~~~-~~~~~~v~ 194 (312)
......+.++. +.+..+++- +-.++.+++|++ +-.|.+||++..+. +..+ ..|...|+
T Consensus 106 --------------e~a~~~~~~~~-~~~f~~ld~-nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT 169 (376)
T KOG1188|consen 106 --------------ESARISWTQQS-GTPFICLDL-NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVT 169 (376)
T ss_pred --------------hhhheeccCCC-CCcceEeec-cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcce
Confidence 02233334444 233566664 557788888864 67899999997765 5555 57999999
Q ss_pred EEEEcCCCC-eEEEEeCCCcEEEccCCCCC----CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484 195 QLEPHPHIP-MFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 266 (312)
Q Consensus 195 ~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~ 266 (312)
++.|+|..+ +|++||.||.|.|||+.... +.....+...+-.+.|..+....+...+....+.+|++.....
T Consensus 170 ~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 170 QLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred eEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 999999775 59999999999999987653 2223334444544454444445688889999999999877643
No 170
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=5.3e-16 Score=116.02 Aligned_cols=224 Identities=13% Similarity=0.123 Sum_probs=144.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 111 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i 111 (312)
.|.+-+|+|.+ ++|++|..+|.|.+..+.+..-... ..+.. .+.....+|.++|..++|. ..+|.++.||.|
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa-~~~gk----~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V 83 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSA-EPPGK----LKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLV 83 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhcccc-CCCCC----cceeeccccCCCeeeeeee--hhheeeccCceE
Confidence 46677899988 8999999999999999875431111 00100 0111127899999999998 458888889999
Q ss_pred EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCcc
Q 021484 112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 191 (312)
Q Consensus 112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 191 (312)
+=|.-+........ -+.|.... +.+.-..... .|.++.. .|..+-++.++.|+.++-||+.+|+..+++++|+.
T Consensus 84 ~gw~W~E~~es~~~-K~lwe~~~--P~~~~~~evP--eINam~l-dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 84 YGWEWNEEEESLAT-KRLWEVKI--PMQVDAVEVP--EINAMWL-DPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred EEeeehhhhhhccc-hhhhhhcC--ccccCcccCC--ccceeEe-ccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence 98875433111000 00011110 0000000111 2777766 78877777788999999999999999999999999
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhh-hhh------hccCCCCceeEEecCCceEEEEEecc
Q 021484 192 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKI-MKA------NKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 192 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~-~~~------~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
.|.++.--.....+++|++||++|+||.++++. .++....+.- ... .+...+..+++.| ..-.+.+|.++.
T Consensus 158 YvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG-gGp~lslwhLrs 236 (325)
T KOG0649|consen 158 YVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG-GGPKLSLWHLRS 236 (325)
T ss_pred eeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec-CCCceeEEeccC
Confidence 999998866667789999999999999999874 3332221111 110 0112234455443 345678999887
Q ss_pred cCcccee
Q 021484 264 RQTLAYR 270 (312)
Q Consensus 264 ~~~~~~~ 270 (312)
......+
T Consensus 237 se~t~vf 243 (325)
T KOG0649|consen 237 SESTCVF 243 (325)
T ss_pred CCceEEE
Confidence 6544333
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.9e-16 Score=122.68 Aligned_cols=166 Identities=13% Similarity=0.115 Sum_probs=116.5
Q ss_pred CCCccceEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCC-ccEEEEEEccCCCeEE
Q 021484 27 PMNSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN-IHITGLAYSNTSELLI 104 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~ 104 (312)
++|+..++.++|... .+..+.+++.||+|++||++..... +.. ....++ .+..+++.+-.+++++
T Consensus 67 k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~-------a~~------~~~~~~~~~f~~ld~nck~~ii~ 133 (376)
T KOG1188|consen 67 KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES-------ARI------SWTQQSGTPFICLDLNCKKNIIA 133 (376)
T ss_pred cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-------hhe------eccCCCCCcceEeeccCcCCeEE
Confidence 457788889999763 6689999999999999999977621 111 113333 3555666655667777
Q ss_pred Eec-----CCcEEEEEcCCCcCCCCCcCCcccccCCC-CCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc
Q 021484 105 SYN-----DELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 178 (312)
Q Consensus 105 s~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~ 178 (312)
++. +..|.+||.++.. + .......|... |+++.|++.+.++|++|+-||-|.+||+.
T Consensus 134 ~GtE~~~s~A~v~lwDvR~~q---------------q~l~~~~eSH~DD--VT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 134 CGTELTRSDASVVLWDVRSEQ---------------QLLRQLNESHNDD--VTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred eccccccCceEEEEEEecccc---------------chhhhhhhhccCc--ceeEEecCCCCCeEEeecccceEEeeecC
Confidence 752 6679999999862 2 23344578776 99999976678999999999999999987
Q ss_pred CCee---EEEeecCccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCC
Q 021484 179 GGKL---VRLMVGDRHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 179 ~~~~---~~~~~~~~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~ 222 (312)
.... +...-.|...|..+.|+..+ +.+.+-+..++..+|+++.+
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 4321 12222356678888887766 23555666778888887644
No 172
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.73 E-value=4.8e-17 Score=129.62 Aligned_cols=180 Identities=16% Similarity=0.242 Sum_probs=140.9
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
..+|..+.|.++..+.++||+.|..|++|-+...... ...........+..|...|+.+.|+|+|.+||++ .+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~------~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~ 86 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG------GGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG 86 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCC------CCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence 4689999999988569999999999999999866521 1001112233447899999999999999999998 58
Q ss_pred CcEEEEEcCCCcCCCCCcCCccc--ccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPED--LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
|.+.+|-...- .+.+..- ..+ ...+...+.+.+|... +..++| +|+++++++++.|..+++||+..|+....+
T Consensus 87 g~v~lWk~~~~-~~~~~d~-e~~~~ke~w~v~k~lr~h~~d--iydL~W-s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 87 GEVFLWKQGDV-RIFDADT-EADLNKEKWVVKKVLRGHRDD--IYDLAW-SPDSNFLVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred ceEEEEEecCc-CCccccc-hhhhCccceEEEEEecccccc--hhhhhc-cCCCceeeeeeccceEEEEEeccceeEeec
Confidence 99999987631 1111100 111 1123445667788866 999999 999999999999999999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
..|..-|..++|.|-++++++-+.|...+.+.+.
T Consensus 162 ~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 162 DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred cccccccceeecchhhhhhhhhccCcccceeeee
Confidence 9999999999999999999999999877776654
No 173
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=9.9e-18 Score=144.62 Aligned_cols=231 Identities=18% Similarity=0.319 Sum_probs=169.7
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||...|+|+.|...| +++++|+.|..++||...+.. |.... .+|.+.|+.++.+.+..+++++
T Consensus 187 lgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et~~--------------~lAs~-rGhs~ditdlavs~~n~~iaaa 250 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMETAR--------------CLASC-RGHSGDITDLAVSSNNTMIAAA 250 (1113)
T ss_pred Hhhhhheeeeeecccc-ceEeecCccceeeeeeccchh--------------hhccC-CCCccccchhccchhhhhhhhc
Confidence 4899999999999999 899999999999999999887 44444 8999999999999988888886
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-----
Q 021484 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG----- 180 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~----- 180 (312)
.|..|++|.+..+ .++..+.+|.+. |++++| +|-. +.+.||++++||.+-.
T Consensus 251 S~D~vIrvWrl~~~----------------~pvsvLrghtga--vtaiaf-sP~~----sss~dgt~~~wd~r~~~~~y~ 307 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPDG----------------APVSVLRGHTGA--VTAIAF-SPRA----SSSDDGTCRIWDARLEPRIYV 307 (1113)
T ss_pred ccCceEEEEecCCC----------------chHHHHhccccc--eeeecc-Cccc----cCCCCCceEeccccccccccC
Confidence 4999999999998 799999999977 999999 7754 7789999999997710
Q ss_pred ---------eeEEEee----------c------CccceEEEEEcCCCCeEE-----------EEeCCCcEEEccCCCCCC
Q 021484 181 ---------KLVRLMV----------G------DRHVVNQLEPHPHIPMFA-----------TCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 181 ---------~~~~~~~----------~------~~~~v~~~~~~p~~~~l~-----------t~~~d~~i~iwd~~~~~~ 224 (312)
..+..+. + .......++|....-.++ ++=.+-.+++|++.++.+
T Consensus 308 prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l 387 (1113)
T KOG0644|consen 308 PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL 387 (1113)
T ss_pred CCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchh
Confidence 0000000 0 000112233333332333 333455678888887753
Q ss_pred -CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc----------ceeEeecCCCccCCCCCCCeEEEeec
Q 021484 225 -PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL----------AYRERRYNAADFESDEEEGETYLLGF 293 (312)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~ 293 (312)
+.+.+|...++.+..-..+.+..++.+.||...|||+..+... +-..++++++.+...++-|.+|++++
T Consensus 388 ~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 388 LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence 5555666666544433347788899999999999998765322 11267778888888888899999987
Q ss_pred CCC
Q 021484 294 SDS 296 (312)
Q Consensus 294 ~~~ 296 (312)
-.+
T Consensus 468 gqs 470 (1113)
T KOG0644|consen 468 GQS 470 (1113)
T ss_pred CCC
Confidence 544
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.73 E-value=1.3e-15 Score=118.29 Aligned_cols=244 Identities=9% Similarity=0.131 Sum_probs=171.8
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEc-------cCCCeEE
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-------NTSELLI 104 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~l~ 104 (312)
-...+.|+|+| ..|++-+.|..+++|++...-............ ....+.......|..-+|- |+..+++
T Consensus 51 f~kgckWSPDG-SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~--~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a 127 (406)
T KOG2919|consen 51 FLKGCKWSPDG-SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFS--KHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFA 127 (406)
T ss_pred hhccceeCCCC-ceEEeecccCeeeEEecChhhcccCCCCccccc--cceeEEeccCCEEEEEEeeeccccCCCccceee
Confidence 35678999999 799999999999999997443221111111111 1111111224556777775 4445666
Q ss_pred Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCc---eeeEEEEecCCCCEEEEeccCceEEEEec-cC
Q 021484 105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVNFFGPNDEYVMSGSDCGHLFIWKK-KG 179 (312)
Q Consensus 105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~~s~~~~~l~~~~~dg~v~iwd~-~~ 179 (312)
++ .+.-|++||..++ ++...+.+..... ...+++| +|+|.+|++| ....|++||+ ++
T Consensus 128 ~ssr~~PIh~wdaftG----------------~lraSy~~ydh~de~taAhsL~F-s~DGeqlfaG-ykrcirvFdt~Rp 189 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTG----------------KLRASYRAYDHQDEYTAAHSLQF-SPDGEQLFAG-YKRCIRVFDTSRP 189 (406)
T ss_pred eccccCceeeeecccc----------------ccccchhhhhhHHhhhhheeEEe-cCCCCeEeec-ccceEEEeeccCC
Confidence 65 5999999999988 5665555432211 2578999 9999999876 5789999998 66
Q ss_pred CeeEEEe--e-----cCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEe
Q 021484 180 GKLVRLM--V-----GDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITL 250 (312)
Q Consensus 180 ~~~~~~~--~-----~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~ 250 (312)
|.-...+ . +..+.+.+++|+|... .++.++.-.++-||.-..+.+ ..+.+|...+. -..+..+++.|++|
T Consensus 190 Gr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT-hL~~~edGn~lfsG 268 (406)
T KOG2919|consen 190 GRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT-HLQWCEDGNKLFSG 268 (406)
T ss_pred CCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCee-eEEeccCcCeeccc
Confidence 6432221 1 2356789999999776 689999999999988777764 55667777774 44578888888887
Q ss_pred cC-CceEEEEEeccc--------------CccceeEeecCCCccCCCCCCCeEEEeecCC-CC
Q 021484 251 TP-DVIMHVLRLQRR--------------QTLAYRERRYNAADFESDEEEGETYLLGFSD-SD 297 (312)
Q Consensus 251 ~~-d~~i~i~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 297 (312)
+. +-.|-.||++.. +..+++...+.+.-+++++.+|.|-+||..+ ++
T Consensus 269 aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 75 688999998753 3445557778889999999999999999987 44
No 175
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=8.6e-17 Score=128.86 Aligned_cols=196 Identities=12% Similarity=0.114 Sum_probs=141.4
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEE
Q 021484 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVY 112 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~ 112 (312)
.+++|+++| ..+++|+.||++|+|+..+... .... ..|...|.++.|+|||++|++- .| ..+
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t--------------~l~e-~~~~~eV~DL~FS~dgk~lasig~d-~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLT--------------ILEE-IAHHAEVKDLDFSPDGKFLASIGAD-SAR 210 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchh--------------hhhh-HhhcCccccceeCCCCcEEEEecCC-ceE
Confidence 679999998 8999999999999999776541 1112 5678889999999999999995 57 999
Q ss_pred EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-----CEEEEeccCceEEEEeccCCee-----
Q 021484 113 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-----EYVMSGSDCGHLFIWKKKGGKL----- 182 (312)
Q Consensus 113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-----~~l~~~~~dg~v~iwd~~~~~~----- 182 (312)
||+..++ ..+..............+.| +.++ ..++.....+.|..|++...+.
T Consensus 211 VW~~~~g----------------~~~a~~t~~~k~~~~~~cRF-~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~ 273 (398)
T KOG0771|consen 211 VWSVNTG----------------AALARKTPFSKDEMFSSCRF-SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR 273 (398)
T ss_pred EEEeccC----------------chhhhcCCcccchhhhhcee-cccCCCceEEEEEecCCCCceeEEEeeeeccccccc
Confidence 9999987 44444442222223566677 5555 2333444566677766543221
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.++.......|++++.+++|++++.|+.||.|-|++..+.+. +.++..+...++...++|+.+++.+.+.+....+..+
T Consensus 274 ~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred hhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 111111234799999999999999999999999999887653 3333333335577778999999999999999999887
Q ss_pred cc
Q 021484 262 QR 263 (312)
Q Consensus 262 ~~ 263 (312)
..
T Consensus 354 ~v 355 (398)
T KOG0771|consen 354 AV 355 (398)
T ss_pred ee
Confidence 65
No 176
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=2.4e-15 Score=118.75 Aligned_cols=159 Identities=16% Similarity=0.221 Sum_probs=126.6
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e--
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-- 106 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-- 106 (312)
+.+|.++.++.+ +|++.-. ..|+|||+++-++..++..- ..+...+.++..++.+.++|. +
T Consensus 87 pt~IL~VrmNr~---RLvV~Le-e~IyIydI~~MklLhTI~t~------------~~n~~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 87 PTSILAVRMNRK---RLVVCLE-ESIYIYDIKDMKLLHTIETT------------PPNPKGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred CCceEEEEEccc---eEEEEEc-ccEEEEecccceeehhhhcc------------CCCccceEeeccCCCCceEEecCCC
Confidence 567889999874 4444444 44999999988855432210 234455666666666678887 3
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCce-EEEEeccCCeeEEE
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~-v~iwd~~~~~~~~~ 185 (312)
..|.|.+||+.+- +....+..|.+. +-+++| +++|.+||++++.|+ |+|+.+.+|+.+.+
T Consensus 151 t~GdV~l~d~~nl----------------~~v~~I~aH~~~--lAalaf-s~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 151 TSGDVVLFDTINL----------------QPVNTINAHKGP--LAALAF-SPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred CCceEEEEEcccc----------------eeeeEEEecCCc--eeEEEE-CCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 3899999999887 788888999976 999999 999999999999887 78999999999999
Q ss_pred eecCc--cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 186 MVGDR--HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 186 ~~~~~--~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
|+... ..|.+++|+|++++|++.|..++|.+|.+....
T Consensus 212 FRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 212 FRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred eeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 97544 468899999999999999999999999987654
No 177
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.72 E-value=2.9e-16 Score=129.51 Aligned_cols=152 Identities=17% Similarity=0.241 Sum_probs=115.6
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCC--CCCCCCccccc-----------ccccccCCCccEEEEEE
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSP--ISSDTPVDTFC-----------PRHLIGKNNIHITGLAY 96 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~ 96 (312)
+..|+|+.|-|.++.+|+.+..+|.+++||..--.-... ......-..|. +...+.--...|...+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 468999999998878999999999999998732110000 00000000000 00001112457889999
Q ss_pred ccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEE
Q 021484 97 SNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIW 175 (312)
Q Consensus 97 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iw 175 (312)
+|||++||+- .||.++|||..+. +++-.++..-.. ..|++| +|||+||++|++|--|.||
T Consensus 299 S~DG~~LA~VSqDGfLRvF~fdt~----------------eLlg~mkSYFGG--LLCvcW-SPDGKyIvtGGEDDLVtVw 359 (636)
T KOG2394|consen 299 SPDGKYLATVSQDGFLRIFDFDTQ----------------ELLGVMKSYFGG--LLCVCW-SPDGKYIVTGGEDDLVTVW 359 (636)
T ss_pred cCCCceEEEEecCceEEEeeccHH----------------HHHHHHHhhccc--eEEEEE-cCCccEEEecCCcceEEEE
Confidence 9999999995 6999999999886 666666666655 999999 9999999999999999999
Q ss_pred eccCCeeEEEeecCccceEEEEEcC
Q 021484 176 KKKGGKLVRLMVGDRHVVNQLEPHP 200 (312)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~~p 200 (312)
.+...+.+..-++|+..|+.|+|.|
T Consensus 360 Sf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 360 SFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccceEEEeccccccceeeEeecc
Confidence 9999999999999999999999987
No 178
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=6.3e-16 Score=131.02 Aligned_cols=205 Identities=14% Similarity=0.177 Sum_probs=146.0
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCC-----CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSD-----EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE 101 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 101 (312)
-||.-.|++++.+|++ +++|+++.. -.|++|+..+.. ... .+.+|.-.|+.++|||+|+
T Consensus 522 YGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~--------------~~~-~L~~HsLTVT~l~FSpdg~ 585 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWL--------------QVQ-ELEGHSLTVTRLAFSPDGR 585 (764)
T ss_pred ccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchh--------------hhh-eecccceEEEEEEECCCCc
Confidence 3899999999999999 899998654 459999988765 222 2388999999999999999
Q ss_pred eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC
Q 021484 102 LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG 180 (312)
Q Consensus 102 ~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~ 180 (312)
+|++. .|.++.+|........ .......+.|. ..|.++.| +|++.+++|++.|.+|++|.....
T Consensus 586 ~LLsvsRDRt~sl~~~~~~~~~------------e~~fa~~k~Ht--RIIWdcsW-~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 586 YLLSVSRDRTVSLYEVQEDIKD------------EFRFACLKAHT--RIIWDCSW-SPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEEeecCceEEeeeeecccch------------hhhhccccccc--eEEEEccc-CcccceeEEecCCceEEEEeccCc
Confidence 88885 6999999998543100 00112245666 44999999 999999999999999999998766
Q ss_pred --eeEEEe--ecCccceEEEEEcCCC----C-eEEEEeCCCcEEEccCCCCC-------------CCCCCCChhhhhhhh
Q 021484 181 --KLVRLM--VGDRHVVNQLEPHPHI----P-MFATCGIEKTVKLWAPMPTD-------------FPPLPDNAEKIMKAN 238 (312)
Q Consensus 181 --~~~~~~--~~~~~~v~~~~~~p~~----~-~l~t~~~d~~i~iwd~~~~~-------------~~~~~~~~~~~~~~~ 238 (312)
+.+..+ ..+..+|+.++|.|-. . .++.|-..|.|.+|...... ......+...+..+.
T Consensus 651 ~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~ 730 (764)
T KOG1063|consen 651 RDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLL 730 (764)
T ss_pred hhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeE
Confidence 444332 3477899999998732 2 46777789999999954111 111123444444444
Q ss_pred ccCC---------CCceeEEecCCceEEEEEec
Q 021484 239 KQGR---------EDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 239 ~~~~---------~~~~l~s~~~d~~i~i~~~~ 262 (312)
|.+. +...++.++.|..+|++++.
T Consensus 731 w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 731 WRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eccccccccccccceeEEeeecccceeEEeecc
Confidence 3322 12345788888888888753
No 179
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.70 E-value=2.4e-15 Score=114.89 Aligned_cols=154 Identities=12% Similarity=0.175 Sum_probs=108.9
Q ss_pred EEEEEcCCCCcEEEEEeC---------CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021484 34 NAIVIDPRNPNYFAVGGS---------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 104 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 104 (312)
..+.|+|+|..+++.... -+...+|.++... .+ ...+.....++|.+++|+|+|+.++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~--------~~-----~~~i~l~~~~~I~~~~WsP~g~~fa 75 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN--------IP-----VESIELKKEGPIHDVAWSPNGNEFA 75 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC--------Cc-----cceeeccCCCceEEEEECcCCCEEE
Confidence 468899999555544441 1345566664332 01 1111122345699999999998654
Q ss_pred E--e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---CceEEEEecc
Q 021484 105 S--Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWKKK 178 (312)
Q Consensus 105 s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---dg~v~iwd~~ 178 (312)
. + .++.|.+||++. +.+..+. ... +..+.| +|+|++|++++. .|.|.+||.+
T Consensus 76 vi~g~~~~~v~lyd~~~-----------------~~i~~~~--~~~--~n~i~w-sP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 76 VIYGSMPAKVTLYDVKG-----------------KKIFSFG--TQP--RNTISW-SPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred EEEccCCcccEEEcCcc-----------------cEeEeec--CCC--ceEEEE-CCCCCEEEEEEccCCCcEEEEEECC
Confidence 4 3 378999999963 4555554 222 778999 999999998864 4679999999
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeC------CCcEEEccCCCCCC
Q 021484 179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDF 224 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~------d~~i~iwd~~~~~~ 224 (312)
+.+.+.... | ..++.++|+|+|++|+++.. |..++||+..+..+
T Consensus 134 ~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 134 KKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred CCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 888887765 3 34789999999999988863 78899999887654
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=3.7e-16 Score=118.09 Aligned_cols=171 Identities=12% Similarity=0.137 Sum_probs=124.2
Q ss_pred CccceEEEEEcCC-CC-cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-
Q 021484 29 NSIRLNAIVIDPR-NP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 105 (312)
Q Consensus 29 h~~~v~~~~~~p~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 105 (312)
..+.++|..+.-. +. -++++|-++|.+.+||+.++..+-...... ........|.++|.++.+.+....=++
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~-----kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSS-----KVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecccccc-----ccccchhhccCcceeeeechhhcCCcCC
Confidence 3566777775432 21 356778899999999999874221111000 111122578999999999876543344
Q ss_pred ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
+.+..+..|.+....+ .............. |..+.. -||++.+++++.|++|+||+.++.+++..
T Consensus 224 ga~dkl~~~Sl~~s~g------------slq~~~e~~lknpG--v~gvrI-RpD~KIlATAGWD~RiRVyswrtl~pLAV 288 (323)
T KOG0322|consen 224 GADDKLVMYSLNHSTG------------SLQIRKEITLKNPG--VSGVRI-RPDGKILATAGWDHRIRVYSWRTLNPLAV 288 (323)
T ss_pred CccccceeeeeccccC------------cccccceEEecCCC--ccceEE-ccCCcEEeecccCCcEEEEEeccCCchhh
Confidence 4577888888864311 11222233323333 788888 89999999999999999999999999999
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
++-|.+.|++++|+|+...+|+++.|++|.+|++
T Consensus 289 LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 289 LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999999986
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=4e-15 Score=128.47 Aligned_cols=237 Identities=15% Similarity=0.129 Sum_probs=161.3
Q ss_pred CeeecccCcccee--eEEecccccCCcCCCCccceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCCeecCCCCCCCCccc
Q 021484 1 MWQFDLRSDSATR--LFYCSSFSENSKQPMNSIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDT 77 (312)
Q Consensus 1 v~~wd~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 77 (312)
|-+||++.....+ .++... ..|+.+++.+.|-.+.. .-|++++.||.|..|+++...+. ...
T Consensus 267 V~lWD~~~~~~~~~s~ls~~~-------~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P--------~e~ 331 (555)
T KOG1587|consen 267 VVLWDLRKGSDTPPSGLSALE-------VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLP--------VEG 331 (555)
T ss_pred EEEEEccCCCCCCCccccccc-------ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccc--------hhh
Confidence 4689999876532 233322 24999999999976431 35888999999999988754421 111
Q ss_pred cccccc-----ccCCCccEEEEEEccCCC--eEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCcee
Q 021484 78 FCPRHL-----IGKNNIHITGLAYSNTSE--LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTV 150 (312)
Q Consensus 78 ~~~~~~-----~~~~~~~i~~~~~~~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 150 (312)
...... .......+++++|.+... +++.+.+|.|+.-+......... .-.+....+..|.+. |
T Consensus 332 ~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--------~~~~~~~~~~~h~g~--v 401 (555)
T KOG1587|consen 332 LLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--------VSYKGHSTFITHIGP--V 401 (555)
T ss_pred cccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc--------ccccccccccccCcc--e
Confidence 111111 012245688999988663 55555799988755443310000 000223344556655 9
Q ss_pred eEEEEecCCCCEEEEeccCceEEEEecc-CCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCCCCCC
Q 021484 151 KGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLP 228 (312)
Q Consensus 151 ~~v~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~ 228 (312)
..+.+ +|-+..++..+.|.++++|... ...++..+..+...|++++|||.... |+++..||.|.+||+.........
T Consensus 402 ~~v~~-nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~ 480 (555)
T KOG1587|consen 402 YAVSR-NPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVL 480 (555)
T ss_pred Eeeec-CCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcc
Confidence 99999 8877666555559999999987 67788888888888999999999876 788889999999998765432221
Q ss_pred --CChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 229 --DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 229 --~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
.....++....++..+..++.|...|.++++++..
T Consensus 481 s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 481 SQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 11255566667777899999999999999999854
No 182
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.68 E-value=1.5e-15 Score=128.56 Aligned_cols=224 Identities=11% Similarity=0.084 Sum_probs=163.2
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.||++.|+|++|+.+| .+||+|+.|..|.+|+..-.. .+-..|.+.|.++.|+|-.+.|+++
T Consensus 50 KgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG-----------------~LkYSH~D~IQCMsFNP~~h~LasC 111 (1081)
T KOG1538|consen 50 KGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEG-----------------ILKYSHNDAIQCMSFNPITHQLASC 111 (1081)
T ss_pred ccccceEEEEEEccCC-ceeccCCCceeEEEecccccc-----------------eeeeccCCeeeEeecCchHHHhhhc
Confidence 3699999999999999 899999999999999976322 1226799999999999999999998
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
+=...-+|..... .+.. ++....+.+++| ..+|++|+.|-.+|+|.+=+- +++....+
T Consensus 112 sLsdFglWS~~qK-----------------~V~K---~kss~R~~~CsW-tnDGqylalG~~nGTIsiRNk-~gEek~~I 169 (1081)
T KOG1538|consen 112 SLSDFGLWSPEQK-----------------SVSK---HKSSSRIICCSW-TNDGQYLALGMFNGTISIRNK-NGEEKVKI 169 (1081)
T ss_pred chhhccccChhhh-----------------hHHh---hhhheeEEEeee-cCCCcEEEEeccCceEEeecC-CCCcceEE
Confidence 7666778887553 2222 333234889999 999999999999999988754 45554444
Q ss_pred e---cCccceEEEEEcCCC-----CeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021484 187 V---GDRHVVNQLEPHPHI-----PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 258 (312)
Q Consensus 187 ~---~~~~~v~~~~~~p~~-----~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 258 (312)
. +..++|.+++|+|.. ..++......++.++.+.+..+..-..-.-. .-+....+++.+++.|+.|+.+++
T Consensus 170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~Fd-P~CisYf~NGEy~LiGGsdk~L~~ 248 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFD-PCCISYFTNGEYILLGGSDKQLSL 248 (1081)
T ss_pred eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCC-chhheeccCCcEEEEccCCCceEE
Confidence 4 356899999999964 3588888999999999887654211100001 123335678999999999999999
Q ss_pred EEec--------ccCcccee-EeecCCCccCCCCCCCeEEEe
Q 021484 259 LRLQ--------RRQTLAYR-ERRYNAADFESDEEEGETYLL 291 (312)
Q Consensus 259 ~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~ 291 (312)
+.-. .....+|. ...|+++.+..+..+|.+-.+
T Consensus 249 fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 249 FTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred EeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehh
Confidence 8521 12233444 567777777777666666433
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.68 E-value=2e-14 Score=123.87 Aligned_cols=201 Identities=20% Similarity=0.354 Sum_probs=148.5
Q ss_pred CCccceEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEE
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLIS 105 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s 105 (312)
+|...|.+++|+|++ ..+++++. |+.+++|++.... ....+..|...+.+++|+|++. ++++
T Consensus 153 ~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 153 GHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGK---------------PLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred cCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCc---------------eEEeeccCCCceEEEEEcCCcceEEEE
Confidence 378889999999998 57888775 9999999999744 1122255889999999999998 6666
Q ss_pred -ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCc-eEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee-
Q 021484 106 -YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL- 182 (312)
Q Consensus 106 -~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~- 182 (312)
+.|+.+++||...+ .... .+.+|... . -..| ++++.++++++.|+.+++|+......
T Consensus 217 ~~~d~~i~~wd~~~~----------------~~~~~~~~~~~~~--~-~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~ 276 (466)
T COG2319 217 GSSDGTIRLWDLSTG----------------KLLRSTLSGHSDS--V-VSSF-SPDGSLLASGSSDGTIRLWDLRSSSSL 276 (466)
T ss_pred ecCCCcEEEEECCCC----------------cEEeeecCCCCcc--e-eEeE-CCCCCEEEEecCCCcEEEeeecCCCcE
Confidence 46999999988754 4444 56677654 3 2266 88888999999999999999986664
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCC--CCChhhhhhhhccCCCCceeE-EecCCceEEE
Q 021484 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPL--PDNAEKIMKANKQGREDHSRI-TLTPDVIMHV 258 (312)
Q Consensus 183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~i 258 (312)
+..+..|...+.++.|+|++..+++++.|+.+++|+...... ... ..+...+..... .++...++ .+..|+.+++
T Consensus 277 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~ 355 (466)
T COG2319 277 LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRL 355 (466)
T ss_pred EEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEe
Confidence 444467889999999999888888888899999998887653 222 134443433333 33323444 4467888888
Q ss_pred EEecccC
Q 021484 259 LRLQRRQ 265 (312)
Q Consensus 259 ~~~~~~~ 265 (312)
|++....
T Consensus 356 ~~~~~~~ 362 (466)
T COG2319 356 WDLRTGK 362 (466)
T ss_pred eecCCCc
Confidence 9877654
No 184
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=1.3e-15 Score=125.77 Aligned_cols=182 Identities=11% Similarity=0.154 Sum_probs=141.5
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
..|.+.+.+-.|+|+| .-|++++.||.|++|.-. |-+ +..+.....+|.|++|.|+..-++.+
T Consensus 101 ~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrs-GML---------------RStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 101 SAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRS-GML---------------RSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred hhhhhhhhhcccCCCC-ceeeeecCCceEEEEecc-chH---------------HHHHhhcCceeEEEEECCCCCceEEe
Confidence 4689999999999999 799999999999999854 321 11113346789999999999988888
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
..+.+.|=.+... ..+...+.|.+- |.++.| ++..+.+++|++|-..++||.. |+.+..-
T Consensus 164 ~g~h~~IKpL~~n----------------~k~i~WkAHDGi--iL~~~W-~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S 223 (737)
T KOG1524|consen 164 QGGHISIKPLAAN----------------SKIIRWRAHDGL--VLSLSW-STQSNIIASGGEDFRFKIWDAQ-GANLFTS 223 (737)
T ss_pred cCCeEEEeecccc----------------cceeEEeccCcE--EEEeec-CccccceeecCCceeEEeeccc-CcccccC
Confidence 8888888877665 566677888865 999999 9999999999999999999976 7788887
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 258 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 258 (312)
..|..+|++++|.|+ ..++.++. .++|+=.++. ..++.. .|++|+..+..++..|.+.+
T Consensus 224 ~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p~~----------GSifnl-sWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 224 AAEEYAITSVAFNPE-KDYLLWSY-NTARFSSPRV----------GSIFNL-SWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred Chhccceeeeeeccc-cceeeeee-eeeeecCCCc----------cceEEE-EEcCCCceeeccccCceEEE
Confidence 889999999999999 66666663 4566333333 333333 36777777777777776544
No 185
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=7.3e-15 Score=126.84 Aligned_cols=191 Identities=14% Similarity=0.086 Sum_probs=124.8
Q ss_pred CccceEEEEEcCCCCcEEEEEeCC---CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
|...+.+.+|+|++ +.|+.++.+ ..|++||+.+++.. ..... .+| ...++|+|+|+.|+.
T Consensus 202 ~~~~v~~p~wSPDG-~~la~~s~~~~~~~i~i~dl~tg~~~------------~l~~~-~g~---~~~~~wSPDG~~La~ 264 (429)
T PRK01742 202 SSQPLMSPAWSPDG-SKLAYVSFENKKSQLVVHDLRSGARK------------VVASF-RGH---NGAPAFSPDGSRLAF 264 (429)
T ss_pred CCCccccceEcCCC-CEEEEEEecCCCcEEEEEeCCCCceE------------EEecC-CCc---cCceeECCCCCEEEE
Confidence 56679999999999 666665543 47999999877521 01111 222 336899999997776
Q ss_pred e--cCCcEEE--EEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEEeccCC
Q 021484 106 Y--NDELVYL--FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGG 180 (312)
Q Consensus 106 ~--~d~~i~i--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~~~ 180 (312)
+ .++.+.| ||+.++ ....+..+... +....| +|+|+.|+..+ .+|...+|++...
T Consensus 265 ~~~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~w-SpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 265 ASSKDGVLNIYVMGANGG-----------------TPSQLTSGAGN--NTEPSW-SPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred EEecCCcEEEEEEECCCC-----------------CeEeeccCCCC--cCCEEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence 4 3776555 466554 33445555433 778999 99999876554 5777888876432
Q ss_pred -eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEE
Q 021484 181 -KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVL 259 (312)
Q Consensus 181 -~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~ 259 (312)
.....+ .+.. ....|+|+|+.++..+.++ +.+||+.++....+..... .....++++++.++..+.++...+|
T Consensus 325 ~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~--~~~~~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 325 GGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFL--DESPSISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred CCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCC--CCCceECCCCCEEEEEEcCCCceEE
Confidence 222223 3433 4578999999998887765 5559998876433321111 1233478899999998888888888
Q ss_pred Eec
Q 021484 260 RLQ 262 (312)
Q Consensus 260 ~~~ 262 (312)
.+.
T Consensus 399 ~~~ 401 (429)
T PRK01742 399 QLV 401 (429)
T ss_pred EEE
Confidence 764
No 186
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=5.2e-15 Score=117.68 Aligned_cols=170 Identities=16% Similarity=0.324 Sum_probs=134.9
Q ss_pred cceEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC--CCeEEEe
Q 021484 31 IRLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--SELLISY 106 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~s~ 106 (312)
.++..|.-+|..+.++|+|+.. ..+++||+...+.+....... ...+--.-.-+++++.|-+. ...||++
T Consensus 149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp------nD~L~LrVPvW~tdi~Fl~g~~~~~fat~ 222 (412)
T KOG3881|consen 149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP------NDRLGLRVPVWITDIRFLEGSPNYKFATI 222 (412)
T ss_pred CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC------CccccceeeeeeccceecCCCCCceEEEE
Confidence 3577788888888899999998 899999999776443221110 00000112346778899887 5678886
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
.-+++++||.+.+. +++..+.-...+ ++++.. .|+++++++|...|.+..||++.++....
T Consensus 223 T~~hqvR~YDt~~qR---------------RPV~~fd~~E~~--is~~~l-~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 223 TRYHQVRLYDTRHQR---------------RPVAQFDFLENP--ISSTGL-TPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred ecceeEEEecCcccC---------------cceeEeccccCc--ceeeee-cCCCcEEEEecccchhheecccCceeecc
Confidence 59999999998764 566666655655 999998 89999999999999999999999998776
Q ss_pred -eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484 186 -MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 186 -~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
+++..+.|+++..+|..++++++|.|+.|||+|+.+..+
T Consensus 285 ~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 285 GLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 788899999999999999999999999999999998543
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=6e-15 Score=130.77 Aligned_cols=236 Identities=10% Similarity=0.090 Sum_probs=153.4
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcC-CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 79 (312)
|++||.+.++.-.-|....++ ...|+.+.+-. +...++++++.||.||||+-..... ...+.+..+.
T Consensus 1088 i~vwd~e~~~~l~~F~n~~~~--------~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~----~~~eLVTaw~ 1155 (1387)
T KOG1517|consen 1088 IRVWDWEKGRLLNGFDNGAFP--------DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW----KKPELVTAWS 1155 (1387)
T ss_pred EEEEecccCceeccccCCCCC--------CCccceeeeecccchhheeeeccCceEEEeccccccc----CCceeEEeec
Confidence 468888776643334333332 56799998854 3447899999999999997542210 0111222221
Q ss_pred c-cccccCCCccEEEEEEccCCC-eEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEec
Q 021484 80 P-RHLIGKNNIHITGLAYSNTSE-LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG 157 (312)
Q Consensus 80 ~-~~~~~~~~~~i~~~~~~~~~~-~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s 157 (312)
. .....+..+.-.-+.|..... ++++|.-..|+|||.... .....+..... .-++++.-..
T Consensus 1156 ~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E----------------~~~~diP~~s~-t~vTaLS~~~ 1218 (1387)
T KOG1517|consen 1156 SLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKE----------------QVVADIPYGSS-TLVTALSADL 1218 (1387)
T ss_pred cccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccc----------------eeEeecccCCC-ccceeecccc
Confidence 1 111111111124566776544 555566788999999876 34444432222 2377776644
Q ss_pred CCCCEEEEeccCceEEEEeccCCe---eEEEeecCccc--eEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCCCCCC-C-
Q 021484 158 PNDEYVMSGSDCGHLFIWKKKGGK---LVRLMVGDRHV--VNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDFPPLP-D- 229 (312)
Q Consensus 158 ~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~--v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~~~~~-~- 229 (312)
..|+.+++|..||.|++||.+... .+...+.|+.. |..+.+-++|-. +++|+.||.|++||++.....++. .
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv 1298 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV 1298 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee
Confidence 568999999999999999987543 46677888876 999999998765 999999999999999985332222 1
Q ss_pred -Ch--hhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484 230 -NA--EKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 266 (312)
Q Consensus 230 -~~--~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~ 266 (312)
+- +..++....+.....+++|+. ..++||++...+.
T Consensus 1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL 1337 (1387)
T ss_pred eccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh
Confidence 11 222445556667778888888 9999999876543
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=1e-14 Score=111.86 Aligned_cols=212 Identities=12% Similarity=0.156 Sum_probs=152.3
Q ss_pred CCccceEEEEEcCCC----CcEEEEEeCCCeEEEEEccCCe--ecCCCCCCCCcccccccccccCCCccEEEEEEccCC-
Q 021484 28 MNSIRLNAIVIDPRN----PNYFAVGGSDEYARVYDIRKCH--WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS- 100 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~----~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 100 (312)
.|+-+++.+.|.|+. +.+|||.+ -.+|+|.+...+ .. .........-..+..++++..|+.-.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~--------~~~~L~~~kns~~~aPlTSFDWne~dp 163 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVE--------LQSVLNNNKNSEFCAPLTSFDWNEVDP 163 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCcee--------hhhhhccCcccccCCcccccccccCCc
Confidence 488999999999964 24666654 589999987432 11 00000111113456789999998755
Q ss_pred CeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC
Q 021484 101 ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 179 (312)
Q Consensus 101 ~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~ 179 (312)
+++.+++ |.+..|||++++. .......+-.|... |..++|.-..-+.+++.+.||.|++||++.
T Consensus 164 ~~igtSSiDTTCTiWdie~~~-------------~~~vkTQLIAHDKE--V~DIaf~~~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 164 NLIGTSSIDTTCTIWDIETGV-------------SGTVKTQLIAHDKE--VYDIAFLKGSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred ceeEeecccCeEEEEEEeecc-------------ccceeeEEEecCcc--eeEEEeccCccceEEEecCCCcEEEEEecc
Confidence 5777766 9999999998851 00123445677755 999999332346789999999999999998
Q ss_pred CeeEEEeecC---ccceEEEEEcCCCC-eEEEEeCC-CcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecC
Q 021484 180 GKLVRLMVGD---RHVVNQLEPHPHIP-MFATCGIE-KTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTP 252 (312)
Q Consensus 180 ~~~~~~~~~~---~~~v~~~~~~p~~~-~l~t~~~d-~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~ 252 (312)
.+.-..+... ..+...++|+++.. ++||-..| ..|.|-|++..+ +..+.+|...+-...|......-+.+++.
T Consensus 229 leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD 308 (364)
T KOG0290|consen 229 LEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD 308 (364)
T ss_pred cccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC
Confidence 7665554322 35778899998765 57776655 579999998765 57788899888777765557889999999
Q ss_pred CceEEEEEeccc
Q 021484 253 DVIMHVLRLQRR 264 (312)
Q Consensus 253 d~~i~i~~~~~~ 264 (312)
|...-+||+++.
T Consensus 309 D~qaliWDl~q~ 320 (364)
T KOG0290|consen 309 DCQALIWDLQQM 320 (364)
T ss_pred cceEEEEecccc
Confidence 999999999765
No 189
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.3e-15 Score=123.80 Aligned_cols=169 Identities=17% Similarity=0.231 Sum_probs=126.5
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--CeEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLI 104 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~ 104 (312)
-||.+-|+|+.|+.+| .+|++|+.|-.+.|||.-..+ ....+-.+|...|.++.|-|.. ++++
T Consensus 47 ~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~K--------------llhsI~TgHtaNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYK--------------LLHSISTGHTANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred ccccceecceeecCCC-CEEeecCCcceEEeecchhcc--------------eeeeeecccccceeEEeeeccCCCeEEE
Confidence 3799999999999999 899999999999999998776 3344447999999999999954 4777
Q ss_pred Ee-cCCcEEEEEcCCCcC-CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCe
Q 021484 105 SY-NDELVYLFEKNMGLG-PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGK 181 (312)
Q Consensus 105 s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~ 181 (312)
++ .|..|++||+....+ ..+-. -......+..|... |..++- .|++ +.+.++++||+++-+|++...
T Consensus 112 sgAgDk~i~lfdl~~~~~~~~d~~-------~~~~~~~~~cht~r--VKria~-~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGGMDHG-------MEETTRCWSCHTDR--VKRIAT-APNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred eccCcceEEEEecccccccccccC-------ccchhhhhhhhhhh--hhheec-CCCCCceEEEecCCcceeeecccCCc
Confidence 86 599999999975210 00000 00344556677765 888887 6776 789999999999999998632
Q ss_pred eEE-------Ee---ecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCC
Q 021484 182 LVR-------LM---VGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPM 220 (312)
Q Consensus 182 ~~~-------~~---~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~ 220 (312)
... .+ ...--...++..+|...+ |+.|+.|--.++||.+
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 211 11 111123568899998765 8999999999999954
No 190
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.64 E-value=2.2e-14 Score=111.43 Aligned_cols=206 Identities=12% Similarity=0.193 Sum_probs=150.9
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
..+|+|.+|+++. ..+|++..+..|.||.....++- ...+.+..|...|+.+.|+|....|+++ .|
T Consensus 10 ~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~~w------------~~~htls~Hd~~vtgvdWap~snrIvtcs~d 76 (361)
T KOG1523|consen 10 LEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGADLW------------EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHD 76 (361)
T ss_pred cCceeeeeecCCC-ceEEeccCCceEEEEEecCCCCc------------eeceehhhhCcceeEEeecCCCCceeEccCC
Confidence 4589999999998 89999999999999998876521 3344448899999999999999888887 59
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee----EE
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL----VR 184 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~----~~ 184 (312)
..-++|....+ .+.++.-.+..+... +++|.| +|.++.+++|+....|.||-+....- ..
T Consensus 77 rnayVw~~~~~-------------~~WkptlvLlRiNrA--At~V~W-sP~enkFAVgSgar~isVcy~E~ENdWWVsKh 140 (361)
T KOG1523|consen 77 RNAYVWTQPSG-------------GTWKPTLVLLRINRA--ATCVKW-SPKENKFAVGSGARLISVCYYEQENDWWVSKH 140 (361)
T ss_pred CCccccccCCC-------------CeeccceeEEEeccc--eeeEee-cCcCceEEeccCccEEEEEEEecccceehhhh
Confidence 99999998443 123455555556644 999999 99999999999999999998764221 11
Q ss_pred EeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC----------CC-C-------ChhhhhhhhccCCCCce
Q 021484 185 LMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP----------LP-D-------NAEKIMKANKQGREDHS 246 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~----------~~-~-------~~~~~~~~~~~~~~~~~ 246 (312)
.-+.+...|+++.|+|++-++++|+.|+..|++..--..+.. ++ + ....-+....+++++..
T Consensus 141 ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~ 220 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNR 220 (361)
T ss_pred hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCE
Confidence 223466789999999999999999999999999843221100 00 0 01111122335566777
Q ss_pred eEEecCCceEEEEEeccc
Q 021484 247 RITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 247 l~s~~~d~~i~i~~~~~~ 264 (312)
|.=.+.|+.+.+-|-...
T Consensus 221 lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 221 LAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred eeEecCCCceEEeecCCC
Confidence 777778888877775443
No 191
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.64 E-value=7.8e-15 Score=111.01 Aligned_cols=239 Identities=13% Similarity=0.147 Sum_probs=157.3
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP 80 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 80 (312)
|++|++++.+....+... |+..|+.+.--|++ .+.+-+.|+.+.+|++.....+..-.....--.||.
T Consensus 37 V~~w~lqt~r~~~~~r~~----------g~~~it~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCr 104 (323)
T KOG0322|consen 37 VKMWVLQTERDLPLIRLF----------GRLFITNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCR 104 (323)
T ss_pred EEEEEeecCccchhhhhh----------ccceeeceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeecccccccc
Confidence 578999988877776643 56789999999974 688888999999999976332211000000000010
Q ss_pred c--------------------------------------ccccCCCccEEEEEEccCC-C--eEEEe-cCCcEEEEEcCC
Q 021484 81 R--------------------------------------HLIGKNNIHITGLAYSNTS-E--LLISY-NDELVYLFEKNM 118 (312)
Q Consensus 81 ~--------------------------------------~~~~~~~~~i~~~~~~~~~-~--~l~s~-~d~~i~iwd~~~ 118 (312)
. .-..+..+.+.+..+..+. . +|++| .+|.+.+||+.+
T Consensus 105 fSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~ 184 (323)
T KOG0322|consen 105 FSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLST 184 (323)
T ss_pred ceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccC
Confidence 0 0001223456666654433 2 44455 699999999987
Q ss_pred CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC--ee--EEEeecCccceE
Q 021484 119 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--KL--VRLMVGDRHVVN 194 (312)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~--~~--~~~~~~~~~~v~ 194 (312)
+... ..+ .+..+.......|..+ |.++.| .+.-..=++|+.+..+.+|+++.. .+ -..+......|.
T Consensus 185 ~~~~--~~~----~~~~kv~~~~ash~qp--vlsldy-as~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~ 255 (323)
T KOG0322|consen 185 GDKI--IQL----PQSSKVESPNASHKQP--VLSLDY-ASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVS 255 (323)
T ss_pred Ccee--ecc----ccccccccchhhccCc--ceeeee-chhhcCCcCCCccccceeeeeccccCcccccceEEecCCCcc
Confidence 6211 000 0111233334456655 999999 655555567888888999987632 22 122222345788
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484 195 QLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 195 ~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
.+..-||++.+||++.|+.||||+.++... ..+.-|...+ ....++++...+++++.|..|.+|++
T Consensus 256 gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagv-n~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 256 GVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGV-NAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcce-eEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999998874 5555566555 55668899999999999999999986
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.64 E-value=2.4e-13 Score=113.78 Aligned_cols=202 Identities=12% Similarity=0.117 Sum_probs=125.0
Q ss_pred cceEEEEEcCCCCcEEEEE-eCCCeEEEEEccC-CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--
Q 021484 31 IRLNAIVIDPRNPNYFAVG-GSDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-- 106 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-- 106 (312)
.....++++|++ +.|+++ ..++.|.+|++.. +.+. ..... ........++++|++++++++
T Consensus 35 ~~~~~l~~spd~-~~lyv~~~~~~~i~~~~~~~~g~l~------------~~~~~--~~~~~p~~i~~~~~g~~l~v~~~ 99 (330)
T PRK11028 35 GQVQPMVISPDK-RHLYVGVRPEFRVLSYRIADDGALT------------FAAES--PLPGSPTHISTDHQGRFLFSASY 99 (330)
T ss_pred CCCccEEECCCC-CEEEEEECCCCcEEEEEECCCCceE------------Eeeee--cCCCCceEEEECCCCCEEEEEEc
Confidence 346788999998 565554 5689999999973 3210 00000 112345689999999977765
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe-ccCceEEEEeccCCeeEE-
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGKLVR- 184 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~-~~dg~v~iwd~~~~~~~~- 184 (312)
.++.|.+|++...... .+....+.+.. ....+++ +|++++++++ ..++.|.+||+.+...+.
T Consensus 100 ~~~~v~v~~~~~~g~~------------~~~~~~~~~~~---~~~~~~~-~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 100 NANCVSVSPLDKDGIP------------VAPIQIIEGLE---GCHSANI-DPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred CCCeEEEEEECCCCCC------------CCceeeccCCC---cccEeEe-CCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 3899999999642100 01111122211 2567888 8999988654 457999999997633221
Q ss_pred ------EeecCccceEEEEEcCCCCeEEEEeC-CCcEEEccCCC--CCC---CC---CCCChh-h-hhhhhccCCCCcee
Q 021484 185 ------LMVGDRHVVNQLEPHPHIPMFATCGI-EKTVKLWAPMP--TDF---PP---LPDNAE-K-IMKANKQGREDHSR 247 (312)
Q Consensus 185 ------~~~~~~~~v~~~~~~p~~~~l~t~~~-d~~i~iwd~~~--~~~---~~---~~~~~~-~-~~~~~~~~~~~~~l 247 (312)
.... ......++|+|+++++++++. +++|.+|++.. +.+ .. ++.... . ......++++++++
T Consensus 164 ~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 1111 234578999999999877775 89999999873 222 11 111100 0 00112356777777
Q ss_pred EEec-CCceEEEEEeccc
Q 021484 248 ITLT-PDVIMHVLRLQRR 264 (312)
Q Consensus 248 ~s~~-~d~~i~i~~~~~~ 264 (312)
++.. .++.+.+|++...
T Consensus 243 yv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 243 YACDRTASLISVFSVSED 260 (330)
T ss_pred EEecCCCCeEEEEEEeCC
Confidence 7764 4789999998654
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.64 E-value=1.1e-14 Score=120.50 Aligned_cols=208 Identities=10% Similarity=0.091 Sum_probs=150.1
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ecCCcEEEEEcCCCcCC
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YNDELVYLFEKNMGLGP 122 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~~~ 122 (312)
..|+.++.||.+.+.+-. ++ +...+..|.+.+.+-.|+|+|.-|++ |.||.|++|....
T Consensus 76 d~~~i~s~DGkf~il~k~-~r---------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG---- 135 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS-AR---------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG---- 135 (737)
T ss_pred ceEEEEcCCceEEEeccc-ch---------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc----
Confidence 578888999999988754 33 22223789999999999999996666 5799999998654
Q ss_pred CCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCC
Q 021484 123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHI 202 (312)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~ 202 (312)
.+..++..... .|.|++| .|+.+-++-+. .+.+.|=.+.....+-.+++|.+-|.++.|+|..
T Consensus 136 -------------MLRStl~Q~~~--~v~c~~W-~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s 198 (737)
T KOG1524|consen 136 -------------MLRSTVVQNEE--SIRCARW-APNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS 198 (737)
T ss_pred -------------hHHHHHhhcCc--eeEEEEE-CCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccc
Confidence 34444444443 4999999 77766655443 3556666666666677899999999999999999
Q ss_pred CeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCccceeEeecCCCccCCC
Q 021484 203 PMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESD 282 (312)
Q Consensus 203 ~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 282 (312)
+.+++|++|-..++||-.+..+.+-..|.-++ +...|.++ .++...+-.++++-..+.+ ......+++++..++.+
T Consensus 199 ~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~I-TSva~npd--~~~~v~S~nt~R~~~p~~G-SifnlsWS~DGTQ~a~g 274 (737)
T KOG1524|consen 199 NIIASGGEDFRFKIWDAQGANLFTSAAEEYAI-TSVAFNPE--KDYLLWSYNTARFSSPRVG-SIFNLSWSADGTQATCG 274 (737)
T ss_pred cceeecCCceeEEeecccCcccccCChhccce-eeeeeccc--cceeeeeeeeeeecCCCcc-ceEEEEEcCCCceeecc
Confidence 99999999999999999888876665566666 44446666 3333333344442222211 22233889999999999
Q ss_pred CCCCeEEEee
Q 021484 283 EEEGETYLLG 292 (312)
Q Consensus 283 ~~~~~v~~~~ 292 (312)
...|.+++.-
T Consensus 275 t~~G~v~~A~ 284 (737)
T KOG1524|consen 275 TSTGQLIVAY 284 (737)
T ss_pred ccCceEEEee
Confidence 8888886653
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.1e-13 Score=109.48 Aligned_cols=194 Identities=10% Similarity=0.162 Sum_probs=142.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484 32 RLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
.|--+-|+. .++|..+.+ +.+++++++.+..+ |...+ ...|.++.++. +.|+.+-..
T Consensus 48 ~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I------------Ce~~f----pt~IL~VrmNr--~RLvV~Lee 106 (391)
T KOG2110|consen 48 SIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI------------CEIFF----PTSILAVRMNR--KRLVVCLEE 106 (391)
T ss_pred EEEEeeccc---ceeEEEecCCCceEEEEEcccCceE------------EEEec----CCceEEEEEcc--ceEEEEEcc
Confidence 455666766 355555443 45899998877633 33222 56788888865 466666555
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc-cCCceeeEEEEecCCCCEEEEe--ccCceEEEEeccCCeeEEEe
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH-RNSQTVKGVNFFGPNDEYVMSG--SDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~~s~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~ 186 (312)
.|+|||+++. +++.++... .++..+..++. +..+.+++-- ...|.|.+||..+-+++..+
T Consensus 107 ~IyIydI~~M----------------klLhTI~t~~~n~~gl~AlS~-n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 107 SIYIYDIKDM----------------KLLHTIETTPPNPKGLCALSP-NNANCYLAYPGSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred cEEEEecccc----------------eeehhhhccCCCccceEeecc-CCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence 5999999887 676666544 22223666666 6667788753 34789999999999999999
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCc-EEEccCCCCC-CCCCCCCh-hhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKT-VKLWAPMPTD-FPPLPDNA-EKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~-i~iwd~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
..|.+.+.+++|+|+|.+|||+|..|+ |||+.+..+. +..++-.. ..-+....+++++.+|.+.+..++|++|.+..
T Consensus 170 ~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 170 NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 999999999999999999999998887 6999988775 45554222 22245556888999999999999999998864
No 195
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=5.1e-13 Score=105.66 Aligned_cols=162 Identities=10% Similarity=0.183 Sum_probs=109.7
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-ecCCCCCCCCcccccccccc-cCCCccEEEEEEccCCCeEEEec-
Q 021484 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH-WYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISYN- 107 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~- 107 (312)
..|+|++|-|.+..-|++|+. +-|.+|.....- ....+. ...+.+...+. .+| ..|++++|++||..+++++
T Consensus 141 rnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~---~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIR---MMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred cceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccc---cccccchhheeCCCC-ceeeEEEEcCCCCEEeeccc
Confidence 469999999988788888887 458899875322 111000 00111111111 234 6899999999999998864
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
|..|.|||..++ ..+......... ++-+.| +|++.+|++++-|+..++|..........+
T Consensus 216 gsssi~iWdpdtg----------------~~~pL~~~glgg--~slLkw-SPdgd~lfaAt~davfrlw~e~q~wt~erw 276 (445)
T KOG2139|consen 216 GSSSIMIWDPDTG----------------QKIPLIPKGLGG--FSLLKW-SPDGDVLFAATCDAVFRLWQENQSWTKERW 276 (445)
T ss_pred CcceEEEEcCCCC----------------CcccccccCCCc--eeeEEE-cCCCCEEEEecccceeeeehhcccceecce
Confidence 889999999887 232222122222 788999 999999999999999999965443333344
Q ss_pred ecCccceEEEEEcCCCCeEE-EEeCCCcEEEcc
Q 021484 187 VGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWA 218 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~-t~~~d~~i~iwd 218 (312)
....+.|...+|+|+|+.|+ +++ |.-++|.
T Consensus 277 ~lgsgrvqtacWspcGsfLLf~~s--gsp~lys 307 (445)
T KOG2139|consen 277 ILGSGRVQTACWSPCGSFLLFACS--GSPRLYS 307 (445)
T ss_pred eccCCceeeeeecCCCCEEEEEEc--CCceEEE
Confidence 44556999999999999844 444 3444444
No 196
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.62 E-value=2.1e-13 Score=117.41 Aligned_cols=203 Identities=19% Similarity=0.354 Sum_probs=157.8
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccC-CCccEEEEEE-ccCCC-eEE
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-NNIHITGLAY-SNTSE-LLI 104 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~-~~~~~-~l~ 104 (312)
+|...+.++.|.+.+ ..++.++.|+.+.+|+...... ....+ .. +...+..+.+ ++++. +++
T Consensus 63 ~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 127 (466)
T COG2319 63 GHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNGEK-------------LIKSL-EGLHDSSVSKLALSSPDGNSILL 127 (466)
T ss_pred eccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCCce-------------eEEEE-eccCCCceeeEEEECCCcceEEe
Confidence 578899999999998 7888888999999999987630 01111 22 1235666666 77777 555
Q ss_pred E-ec-CCcEEEEEcCC-CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEeccCC
Q 021484 105 S-YN-DELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGG 180 (312)
Q Consensus 105 s-~~-d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~~ 180 (312)
. +. |+.+.+|+... . .....+..|... +..++| +|++.++++++. ++.+++|+...+
T Consensus 128 ~~~~~d~~~~~~~~~~~~----------------~~~~~~~~~~~~--v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
T COG2319 128 ASSSLDGTVKLWDLSTPG----------------KLIRTLEGHSES--VTSLAF-SPDGKLLASGSSLDGTIKLWDLRTG 188 (466)
T ss_pred ccCCCCccEEEEEecCCC----------------eEEEEEecCccc--EEEEEE-CCCCCEEEecCCCCCceEEEEcCCC
Confidence 4 34 89999999986 4 566777888866 999999 999998888886 999999999988
Q ss_pred eeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCCC-C-CCCCChhhhhhhhccCCCCceeEEecCCceEE
Q 021484 181 KLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDF-P-PLPDNAEKIMKANKQGREDHSRITLTPDVIMH 257 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 257 (312)
+.+..+.+|...|.+++|+|++. .+++++.|+.|++||...+.. . .+..|.... . ..+.+++.++++++.++.++
T Consensus 189 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~d~~~~ 266 (466)
T COG2319 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-V-SSFSPDGSLLASGSSDGTIR 266 (466)
T ss_pred ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-e-EeECCCCCEEEEecCCCcEE
Confidence 88899998999999999999998 566658999999998885543 3 355555543 1 14666667888999999999
Q ss_pred EEEecccCc
Q 021484 258 VLRLQRRQT 266 (312)
Q Consensus 258 i~~~~~~~~ 266 (312)
+|++.....
T Consensus 267 ~~~~~~~~~ 275 (466)
T COG2319 267 LWDLRSSSS 275 (466)
T ss_pred EeeecCCCc
Confidence 999876543
No 197
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.6e-13 Score=109.64 Aligned_cols=246 Identities=11% Similarity=0.129 Sum_probs=164.1
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.+|.+-|+++.|+.++ ++|++|+.|..+++|++...-... .+.|+.... ..|...|.+++|....+++.++
T Consensus 53 ~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k---~~KPI~~~~-----~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 53 REHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRK---TPKPIGVME-----HPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred hhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhc---CCCCceecc-----CccccceEEEEEccCCeeEecC
Confidence 3799999999999997 899999999999999987432111 112222211 3466899999999988899997
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-eEE
Q 021484 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVR 184 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~ 184 (312)
.+++|.+.|+++. +.+..+....+.+.|..+.- +|..+.|++.+.++.|.+||.+..+ +..
T Consensus 124 ~~~~~VI~HDiEt~----------------qsi~V~~~~~~~~~VY~m~~-~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~ 186 (609)
T KOG4227|consen 124 ERWGTVIKHDIETK----------------QSIYVANENNNRGDVYHMDQ-HPTDNTLIVVTRAKLVSFIDNRDRQNPIS 186 (609)
T ss_pred CCcceeEeeecccc----------------eeeeeecccCcccceeeccc-CCCCceEEEEecCceEEEEeccCCCCCCc
Confidence 5999999999986 45555543333345999998 8999999999999999999988654 222
Q ss_pred E--eecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC--------CCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484 185 L--MVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF--------PPLPDNAEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 185 ~--~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
. +.........+.|+|...- |++++..+-+.+||.+.+.. ..++..... .....|++.+..+++....
T Consensus 187 ~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~-~M~~~~~~~G~Q~msiRR~ 265 (609)
T KOG4227|consen 187 LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTE-WMGSLWSPSGNQFMSIRRG 265 (609)
T ss_pred eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchh-hhheeeCCCCCeehhhhcc
Confidence 1 1223356788999998765 78888889999999887541 122221111 1223366777777776665
Q ss_pred ceEEEEEecccCcc---------cee-------EeecCCCccCCCCCCCeEEEeecCCCCCC
Q 021484 254 VIMHVLRLQRRQTL---------AYR-------ERRYNAADFESDEEEGETYLLGFSDSDAS 299 (312)
Q Consensus 254 ~~i~i~~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 299 (312)
..-..+|+-..... .|. ..-.....+.++.+.=.+|+|-+.-..++
T Consensus 266 ~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds 327 (609)
T KOG4227|consen 266 KCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDS 327 (609)
T ss_pred CCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccc
Confidence 44444554332111 111 11112334566666666788877554443
No 198
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=8.3e-14 Score=116.16 Aligned_cols=244 Identities=14% Similarity=0.140 Sum_probs=167.5
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccc-------------ccccCC-------
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPR-------------HLIGKN------- 87 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~------- 87 (312)
+|+..-+.|..+|+|..++|+|..--.|++||+....+.-....+..+-.|.+. ..+.-|
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 478888999999999888899999999999999866543322222222111100 000011
Q ss_pred ----CccEEEEEEcc-CCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCE
Q 021484 88 ----NIHITGLAYSN-TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 162 (312)
Q Consensus 88 ----~~~i~~~~~~~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~ 162 (312)
...-..++++. ...+++.++...|+-++++.+ ..+..|...... +.++.. ++...+
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG----------------rfL~P~~~~~~~--lN~v~i-n~~hgL 189 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG----------------RFLNPFETDSGE--LNVVSI-NEEHGL 189 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEcccc----------------cccccccccccc--ceeeee-cCccce
Confidence 11223444443 334667777888999999988 677777766655 888988 899999
Q ss_pred EEEeccCceEEEEeccCCeeEEEeec------Ccc-----ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCCh
Q 021484 163 VMSGSDCGHLFIWKKKGGKLVRLMVG------DRH-----VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNA 231 (312)
Q Consensus 163 l~~~~~dg~v~iwd~~~~~~~~~~~~------~~~-----~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~ 231 (312)
|++|+.+|.|-+||.++...+..+.. |.+ .|+++.|+.+|-.++.|..+|.+.|||+++.+......|.
T Consensus 190 la~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 190 LACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred EEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence 99999999999999998777666542 322 4999999999999999999999999999998865555444
Q ss_pred h--hhhhhhccCCCCceeEEecCCceEEEEEecccCccceeEeecCCCccCCCCCCCeEEE
Q 021484 232 E--KIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERRYNAADFESDEEEGETYL 290 (312)
Q Consensus 232 ~--~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 290 (312)
. ++....|...++.-.+.......++||+-..+.....++...+..++-.-.+.|.+++
T Consensus 270 ~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 270 YELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFT 330 (703)
T ss_pred CccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEE
Confidence 3 3444554444444444445567899999777766666666555555444444444443
No 199
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.60 E-value=5e-14 Score=126.78 Aligned_cols=231 Identities=12% Similarity=0.129 Sum_probs=151.0
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.|+..|..++.++....+|++|+.||+|++|+.+.-.- ....+............+..+.+.+.+..+|.+
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~--------~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEG--------EGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhc--------CcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 37888889998887657999999999999999975431 001111111112246778899999999877776
Q ss_pred cCCcEEEEEcCCCcCC-------------------------------------CCCcCCcccccCCCCCceEecccCCce
Q 021484 107 NDELVYLFEKNMGLGP-------------------------------------SPLSLSPEDLQKREEPQVYSGHRNSQT 149 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (312)
.||.|.+.++...... ....+-.|+.........++.....+.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 6999999998762100 001122222333233333333333345
Q ss_pred eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee-cCccceEEEEEcCCCC---e-EEEEe-CCCcEEEccCCCCC
Q 021484 150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHPHIP---M-FATCG-IEKTVKLWAPMPTD 223 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~---~-l~t~~-~d~~i~iwd~~~~~ 223 (312)
|++++. +|.+++++.|+..|.+.+||++-+.++..+. .+..++..+..+|..+ . +.+++ ..+.|.+|++.++.
T Consensus 1198 vTSi~i-dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1198 VTSIVI-DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred eeEEEe-cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 999998 9999999999999999999999998888875 3446788888877544 4 44444 57889999998764
Q ss_pred CCC-CCCC-hhhhhh-----------------hhccCCCCceeEEecCCceEEEEEecccCcc
Q 021484 224 FPP-LPDN-AEKIMK-----------------ANKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 224 ~~~-~~~~-~~~~~~-----------------~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
... +... ....+. .......+..+++++.|..|+.||.......
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 211 1111 000000 0011123568889999999999998766444
No 200
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.60 E-value=1.5e-14 Score=115.59 Aligned_cols=167 Identities=18% Similarity=0.281 Sum_probs=127.0
Q ss_pred CCccEEEEEEccCCC-eEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE
Q 021484 87 NNIHITGLAYSNTSE-LLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 164 (312)
Q Consensus 87 ~~~~i~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~ 164 (312)
...++.++.|.++.. .++++ .|..|++|-+........ -.+.+....+..|... |+.+.| +|+|..|+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~-------~~~V~y~s~Ls~H~~a--VN~vRf-~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG-------DMKVEYLSSLSRHTRA--VNVVRF-SPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC-------ceeEEEeecccCCcce--eEEEEE-cCCcCeee
Confidence 356799999999887 89996 699999999876521100 0111344556677765 999999 99999999
Q ss_pred EeccCceEEEEecc--------C--------CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCC-C
Q 021484 165 SGSDCGHLFIWKKK--------G--------GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPP-L 227 (312)
Q Consensus 165 ~~~~dg~v~iwd~~--------~--------~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~-~ 227 (312)
+|+.+|.|.+|-.. + ....+.+.+|...|+.++|+|++.++++++.|.++++||+..+.+.. +
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeec
Confidence 99999999999754 2 12345567899999999999999999999999999999999988644 4
Q ss_pred CCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 228 PDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.+|..-+ ....|.+.+.++++-+.|...+.+.+...
T Consensus 162 ~dh~~yv-qgvawDpl~qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 162 DDHEHYV-QGVAWDPLNQYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred ccccccc-ceeecchhhhhhhhhccCcccceeeeeee
Confidence 4444444 55557787888888888876666665443
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.6e-13 Score=102.91 Aligned_cols=188 Identities=13% Similarity=0.145 Sum_probs=126.9
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE-ccCCCeEEEecCCc
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY-SNTSELLISYNDEL 110 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~s~~d~~ 110 (312)
.|++|...|.. +-++.++.|+.++.||+++++. .. .+.+|++.+.++.- +.++++|..+.||+
T Consensus 116 eINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i--------------~r-~~rGHtDYvH~vv~R~~~~qilsG~EDGt 179 (325)
T KOG0649|consen 116 EINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRI--------------QR-EYRGHTDYVHSVVGRNANGQILSGAEDGT 179 (325)
T ss_pred ccceeEeccCC-CcEEEecCCeEEEEEEecCCEE--------------EE-EEcCCcceeeeeeecccCcceeecCCCcc
Confidence 58999999988 4555555899999999999972 22 23899999999988 55556655568999
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC--------CceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021484 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN--------SQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
+++||+++. +.++.+..... .+.|.+++ .+..+|++|+ ...+.+|.++..++
T Consensus 180 vRvWd~kt~----------------k~v~~ie~yk~~~~lRp~~g~wigala---~~edWlvCGg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 180 VRVWDTKTQ----------------KHVSMIEPYKNPNLLRPDWGKWIGALA---VNEDWLVCGG-GPKLSLWHLRSSES 239 (325)
T ss_pred EEEEecccc----------------ceeEEeccccChhhcCcccCceeEEEe---ccCceEEecC-CCceeEEeccCCCc
Confidence 999999987 55555543322 12355554 3567777665 57899999999988
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCC-CCceeEEecCCceEEEE
Q 021484 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVL 259 (312)
Q Consensus 183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~ 259 (312)
...+. ..+++..+.| ....+++++..+.|.-|.+.+.-....+......+... +.. .-..+..++....+.++
T Consensus 240 t~vfp-ipa~v~~v~F--~~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s-~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 240 TCVFP-IPARVHLVDF--VDDCVLIGGEGNHVQSYTLNGVLQANIPVESTACYSAS-WQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eEEEe-cccceeEeee--ecceEEEeccccceeeeeeccEEEEeccCCccceeeec-ccCCceEEEEecccceeeeee
Confidence 87776 4467788888 44577888888899999887654333332333232222 222 22334444555556655
No 202
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=1.6e-14 Score=120.87 Aligned_cols=154 Identities=20% Similarity=0.334 Sum_probs=122.3
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
.+.|.++.|+|..+ +|++++. ..|+|||+..+.+ ++.+ ......|.+++.+|.|..|+.+ .|
T Consensus 566 kG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqel--------------vKkL-~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 566 KGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQEL--------------VKKL-LTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred CCceeEEEecCCCc-eEEEEec-cceEEEehhHHHH--------------HHHH-hcCCeeeeeeeecCCCCeEEEecCC
Confidence 56799999999884 5555554 7899999987663 2333 2335678999999999755554 69
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc------CC--
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK------GG-- 180 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~------~~-- 180 (312)
+.+..||+.-.. ++.+++..|... +++|+| ++.-.++++|+.||++.|+.-. ..
T Consensus 629 ~k~~WfDldlss---------------kPyk~lr~H~~a--vr~Va~-H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpl 690 (733)
T KOG0650|consen 629 KKMCWFDLDLSS---------------KPYKTLRLHEKA--VRSVAF-HKRYPLFASGSDDGTVIVFHGMVYNDLLQNPL 690 (733)
T ss_pred CeeEEEEcccCc---------------chhHHhhhhhhh--hhhhhh-ccccceeeeecCCCcEEEEeeeeehhhhcCCc
Confidence 999999997642 677888888866 999999 8999999999999999998621 11
Q ss_pred -eeEEEeecCccc----eEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021484 181 -KLVRLMVGDRHV----VNQLEPHPHIPMFATCGIEKTVKLWA 218 (312)
Q Consensus 181 -~~~~~~~~~~~~----v~~~~~~p~~~~l~t~~~d~~i~iwd 218 (312)
-++..+++|... |.++.|||...+|++++.||+|++|.
T Consensus 691 iVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 691 IVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred eEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 346677888654 89999999999999999999999983
No 203
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=6e-13 Score=114.79 Aligned_cols=193 Identities=10% Similarity=0.080 Sum_probs=122.9
Q ss_pred ccceEEEEEcCCCCcEEEEEe---CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 30 SIRLNAIVIDPRNPNYFAVGG---SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
...+.+.+|+|+| +.|+..+ .+..|.+|++.+++... + ......+..++|+|+|+.|+..
T Consensus 198 ~~~~~~p~wSPDG-~~la~~s~~~g~~~i~i~dl~~G~~~~-------l---------~~~~~~~~~~~~SPDG~~La~~ 260 (429)
T PRK03629 198 PQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLANGAVRQ-------V---------ASFPRHNGAPAFSPDGSKLAFA 260 (429)
T ss_pred CCceeeeEEcCCC-CEEEEEEecCCCcEEEEEECCCCCeEE-------c---------cCCCCCcCCeEECCCCCEEEEE
Confidence 4578899999999 5565433 34579999998775210 0 1112234468999999976653
Q ss_pred -c-CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC-c--eEEEEeccC
Q 021484 107 -N-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKKG 179 (312)
Q Consensus 107 -~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d-g--~v~iwd~~~ 179 (312)
. ++ .|++||+.++ +. ..+..+... +....| +|+|+.|+..+.+ + .|+++|+.+
T Consensus 261 ~~~~g~~~I~~~d~~tg----------------~~-~~lt~~~~~--~~~~~w-SPDG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 261 LSKTGSLNLYVMDLASG----------------QI-RQVTDGRSN--NTEPTW-FPDSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred EcCCCCcEEEEEECCCC----------------CE-EEccCCCCC--cCceEE-CCCCCEEEEEeCCCCCceEEEEECCC
Confidence 2 44 5899999875 33 333333322 678888 9999988766653 3 455567766
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCce-
Q 021484 180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVI- 255 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~- 255 (312)
++. ..+..+........|+|+|+.++..+.+ ..|.+||+.++....+.... ......+++++..++..+.++.
T Consensus 321 g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~ 397 (429)
T PRK03629 321 GAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMG 397 (429)
T ss_pred CCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCc
Confidence 654 3343344455678999999998776543 35888999887754443221 1122346788888887776653
Q ss_pred --EEEEEec
Q 021484 256 --MHVLRLQ 262 (312)
Q Consensus 256 --i~i~~~~ 262 (312)
+.++++.
T Consensus 398 ~~l~~~~~~ 406 (429)
T PRK03629 398 SVLNLVSTD 406 (429)
T ss_pred eEEEEEECC
Confidence 4555543
No 204
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=3.4e-13 Score=106.66 Aligned_cols=207 Identities=15% Similarity=0.182 Sum_probs=140.5
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEecCC
Q 021484 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYNDE 109 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~d~ 109 (312)
.-+..++|++.- ..++++..|-.|++|+-... ++..+.......|++++|-|.+. .|+.+--+
T Consensus 99 ~dlr~~aWhqH~-~~fava~nddvVriy~ksst---------------~pt~Lks~sQrnvtclawRPlsaselavgCr~ 162 (445)
T KOG2139|consen 99 IDLRGVAWHQHI-IAFAVATNDDVVRIYDKSST---------------CPTKLKSVSQRNVTCLAWRPLSASELAVGCRA 162 (445)
T ss_pred cceeeEeechhh-hhhhhhccCcEEEEeccCCC---------------CCceecchhhcceeEEEeccCCcceeeeeecc
Confidence 357889999955 78899999999999998763 33333344567899999999874 67777778
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEeccCCeeEEEeec
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~~~ 188 (312)
-|.+|...... ....... .......+.++... ..+|+++.| .++|..+++++. +..|+|||..++..+.....
T Consensus 163 gIciW~~s~tl---n~~r~~~-~~s~~~~qvl~~pg-h~pVtsmqw-n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~ 236 (445)
T KOG2139|consen 163 GICIWSDSRTL---NANRNIR-MMSTHHLQVLQDPG-HNPVTSMQW-NEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK 236 (445)
T ss_pred eeEEEEcCccc---ccccccc-cccccchhheeCCC-CceeeEEEE-cCCCCEEeecccCcceEEEEcCCCCCccccccc
Confidence 89999875321 0000000 11112333333222 256999999 999999998875 67899999999887655544
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCc-eeEEecCCceEEEEE
Q 021484 189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDH-SRITLTPDVIMHVLR 260 (312)
Q Consensus 189 ~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~i~~ 260 (312)
..+.++-+.|||++.+|+++.-|+..++|+..... .....-... -+..+.|+++++ +|++.+....++-..
T Consensus 237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred CCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 55788899999999999999999999999654332 111111122 345666888655 455666665554443
No 205
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=5.2e-15 Score=120.18 Aligned_cols=196 Identities=15% Similarity=0.176 Sum_probs=163.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 111 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i 111 (312)
+-+.+.++.+| +.++.|+.-|.|..+|..++++..++ . -...|.++.|-.+.+++|.+....+
T Consensus 131 GPY~~~ytrnG-rhlllgGrKGHlAa~Dw~t~~L~~Ei------------~----v~Etv~Dv~~LHneq~~AVAQK~y~ 193 (545)
T KOG1272|consen 131 GPYHLDYTRNG-RHLLLGGRKGHLAAFDWVTKKLHFEI------------N----VMETVRDVTFLHNEQFFAVAQKKYV 193 (545)
T ss_pred CCeeeeecCCc-cEEEecCCccceeeeecccceeeeee------------e----hhhhhhhhhhhcchHHHHhhhhceE
Confidence 45778999999 89999999999999999999865321 1 1456888999999999999999999
Q ss_pred EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCcc
Q 021484 112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 191 (312)
Q Consensus 112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 191 (312)
+|||-..- .+.-++.+. .|..+.| -|..-+|++++..|.++.-|+.+|+.+..+....+
T Consensus 194 yvYD~~Gt-----------------ElHClk~~~---~v~rLeF-LPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G 252 (545)
T KOG1272|consen 194 YVYDNNGT-----------------ELHCLKRHI---RVARLEF-LPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG 252 (545)
T ss_pred EEecCCCc-----------------EEeehhhcC---chhhhcc-cchhheeeecccCCceEEEeechhhhhHHHHccCC
Confidence 99997542 333444332 2889999 68888899999999999999999999999988888
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484 192 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQT 266 (312)
Q Consensus 192 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~ 266 (312)
.+..++-+|-+..+-+|...|+|.+|.+.+.+. ..+..|..++ ....+.+.+.+++|.+.|..++|||++....
T Consensus 253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V-~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q 327 (545)
T KOG1272|consen 253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPV-SSIAVDRGGRYMATTGLDRKVKIWDLRNFYQ 327 (545)
T ss_pred ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCc-ceEEECCCCcEEeecccccceeEeeeccccc
Confidence 999999999999999999999999999998874 4455566666 5555888999999999999999999987653
No 206
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=8.7e-13 Score=114.24 Aligned_cols=194 Identities=10% Similarity=0.067 Sum_probs=121.1
Q ss_pred CccceEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE-
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI- 104 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~- 104 (312)
|...+.+.+|+|++ +.|+..+. +..|++||+.+++.. .+ ..........+|+|+|+.|+
T Consensus 202 ~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SpDG~~l~~ 264 (433)
T PRK04922 202 SAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQRE---------------LV-ASFRGINGAPSFSPDGRRLAL 264 (433)
T ss_pred CCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEE---------------Ee-ccCCCCccCceECCCCCEEEE
Confidence 45578899999999 56666553 346999999877521 11 12233345789999998654
Q ss_pred Ee-cCC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEecc
Q 021484 105 SY-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKK 178 (312)
Q Consensus 105 s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~ 178 (312)
+. .++ .|++||+.++ + .+.+..+... ....+| +|++++|+..+. +| .|+++++.
T Consensus 265 ~~s~~g~~~Iy~~d~~~g----------------~-~~~lt~~~~~--~~~~~~-spDG~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 265 TLSRDGNPEIYVMDLGSR----------------Q-LTRLTNHFGI--DTEPTW-APDGKSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred EEeCCCCceEEEEECCCC----------------C-eEECccCCCC--ccceEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence 33 344 6999999876 2 3334444322 567888 999998877654 44 47777777
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC--
Q 021484 179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD-- 253 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d-- 253 (312)
+++... +..+......++|+|+|+.++..+.++ .|.+||+.++....+.... .. ....++++++.++..+.+
T Consensus 325 ~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~-~~-~~p~~spdG~~i~~~s~~~g 401 (433)
T PRK04922 325 GGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS-LD-ESPSFAPNGSMVLYATREGG 401 (433)
T ss_pred CCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC-CC-CCceECCCCCEEEEEEecCC
Confidence 665432 322333445789999999987765433 6999999887654443221 11 122467777766554432
Q ss_pred -ceEEEEEec
Q 021484 254 -VIMHVLRLQ 262 (312)
Q Consensus 254 -~~i~i~~~~ 262 (312)
+.+.++++.
T Consensus 402 ~~~L~~~~~~ 411 (433)
T PRK04922 402 RGVLAAVSTD 411 (433)
T ss_pred ceEEEEEECC
Confidence 345555543
No 207
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.56 E-value=5.7e-14 Score=116.20 Aligned_cols=170 Identities=18% Similarity=0.227 Sum_probs=117.8
Q ss_pred CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eEEEecCCcEEEEEcC
Q 021484 40 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISYNDELVYLFEKN 117 (312)
Q Consensus 40 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~~d~~i~iwd~~ 117 (312)
|.+ .-+++|-.-|.+.+.|....+..... .... .-.+..++++.|-|.+. +|++-.+|.+++||..
T Consensus 183 ~~g-~dllIGf~tGqvq~idp~~~~~sklf---------ne~r--~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~ 250 (636)
T KOG2394|consen 183 PKG-LDLLIGFTTGQVQLIDPINFEVSKLF---------NEER--LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE 250 (636)
T ss_pred CCC-cceEEeeccCceEEecchhhHHHHhh---------hhcc--cccccceEEEEEEeCCCceEEEEEecCceEEeecc
Confidence 444 56788888899998887753321111 1111 11247899999999775 5555579999999875
Q ss_pred CCcC---CCCCcCCccc---------ccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 118 MGLG---PSPLSLSPED---------LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 118 ~~~~---~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
.... +..+.++..+ ..+..++..+.--.. .|...+| +|+|++||+.+.||.++|||+.+.+++..
T Consensus 251 ~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g--~in~f~F-S~DG~~LA~VSqDGfLRvF~fdt~eLlg~ 327 (636)
T KOG2394|consen 251 IVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEG--SINEFAF-SPDGKYLATVSQDGFLRIFDFDTQELLGV 327 (636)
T ss_pred ccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccc--cccceeE-cCCCceEEEEecCceEEEeeccHHHHHHH
Confidence 4321 1112111111 011122222222222 3888998 89999999999999999999998888777
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
++.--+...|++|+|||+++++|++|-.|.||.+...++
T Consensus 328 mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV 366 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV 366 (636)
T ss_pred HHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceE
Confidence 776668899999999999999999999999999876653
No 208
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2e-12 Score=112.17 Aligned_cols=182 Identities=10% Similarity=0.064 Sum_probs=118.3
Q ss_pred CccceEEEEEcCCCCcEEEEEe---CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE-
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGG---SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI- 104 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~- 104 (312)
|...+.+.+|+|++ +.|+..+ .+..|++||+.+++.. .+ ..+...+...+|+|+|+.|+
T Consensus 200 ~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SPDG~~la~ 262 (435)
T PRK05137 200 GSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRE---------------LV-GNFPGMTFAPRFSPDGRKVVM 262 (435)
T ss_pred CCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEE---------------Ee-ecCCCcccCcEECCCCCEEEE
Confidence 56689999999999 5665554 3468999999877521 11 23345667889999998655
Q ss_pred Ee-cCC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-C--ceEEEEecc
Q 021484 105 SY-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKK 178 (312)
Q Consensus 105 s~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-d--g~v~iwd~~ 178 (312)
+. .++ .|++||+.++ ..+.+..+... .....| +|+|+.|+..+. + ..|+++|+.
T Consensus 263 ~~~~~g~~~Iy~~d~~~~-----------------~~~~Lt~~~~~--~~~~~~-spDG~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 263 SLSQGGNTDIYTMDLRSG-----------------TTTRLTDSPAI--DTSPSY-SPDGSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred EEecCCCceEEEEECCCC-----------------ceEEccCCCCc--cCceeE-cCCCCEEEEEECCCCCCeEEEEECC
Confidence 43 344 4888888775 33444444432 567888 999998887653 3 368888987
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEe
Q 021484 179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITL 250 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 250 (312)
+++. ..+..+...+....|+|+|+.++..+.+ ..|.+|++.++....+... .. .....|+++++.++..
T Consensus 323 g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~-~~-~~~p~~spDG~~i~~~ 394 (435)
T PRK05137 323 GSNP-RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG-FL-VEGPTWAPNGRVIMFF 394 (435)
T ss_pred CCCe-EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC-CC-CCCCeECCCCCEEEEE
Confidence 6654 3443344556778999999998877643 3688889866554333211 11 2333466676665543
No 209
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2.7e-13 Score=118.22 Aligned_cols=218 Identities=16% Similarity=0.244 Sum_probs=152.4
Q ss_pred CCCccceEEEEEcCCCC--cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccc------------------------
Q 021484 27 PMNSIRLNAIVIDPRNP--NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCP------------------------ 80 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------------------ 80 (312)
.+|..+++.+.+.|... .++.+.+.||.|++||...+.+..+.....++.....
T Consensus 54 ~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~ 133 (792)
T KOG1963|consen 54 EDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTF 133 (792)
T ss_pred ccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeec
Confidence 45889999999999765 4667899999999999998887654433222211100
Q ss_pred --------------------cccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCce
Q 021484 81 --------------------RHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV 140 (312)
Q Consensus 81 --------------------~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (312)
..+...|.. -.+|.+++.|++.....+..+.+|+..... ........
T Consensus 134 s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~------------~~~~~~~~ 200 (792)
T KOG1963|consen 134 SKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT------------KHTSSRDI 200 (792)
T ss_pred ccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEEeeeEEEEEecccc------------eeeccchh
Confidence 000111222 345667777776666677788888887641 00000011
Q ss_pred EecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC----CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484 141 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG----GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 141 ~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~----~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~i 216 (312)
-..|.- .+++.++ +|+++++++|..||+|.+|.-.. ......+.=|...|++++|+++|.+|++|+.+|.+-+
T Consensus 201 ~~~Htf--~~t~~~~-spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 201 TVHHTF--NITCVAL-SPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVL 277 (792)
T ss_pred hhhhcc--cceeEEe-ccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEE
Confidence 112332 2788998 99999999999999999996322 2234556668889999999999999999999999999
Q ss_pred ccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484 217 WAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 217 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
|.+.+++..-++ ..+.++....+++++.+......|+.+.+...
T Consensus 278 Wq~~T~~kqfLP-RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 278 WQLETGKKQFLP-RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred EeecCCCccccc-ccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 999999854444 44444444457888888888889999998875
No 210
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.54 E-value=4.4e-12 Score=106.22 Aligned_cols=202 Identities=10% Similarity=0.107 Sum_probs=125.1
Q ss_pred ceEEEEEcCCCCcEEEEE-eCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e-cC
Q 021484 32 RLNAIVIDPRNPNYFAVG-GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-ND 108 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d 108 (312)
....++|+|++ ++++++ ..++.|.+|++.+..... ..+. . ..+......++++|+++++++ . .+
T Consensus 81 ~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~-----~~~~------~-~~~~~~~~~~~~~p~g~~l~v~~~~~ 147 (330)
T PRK11028 81 SPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPV-----APIQ------I-IEGLEGCHSANIDPDNRTLWVPCLKE 147 (330)
T ss_pred CceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCC-----Ccee------e-ccCCCcccEeEeCCCCCEEEEeeCCC
Confidence 45689999999 555555 458999999997432100 0000 0 112234567889999987655 4 48
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCC----ceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEeccC--Ce
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEP----QVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKG--GK 181 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~--~~ 181 (312)
+.|.+||+.+.. .+. ........ .....++| +|++++++++.. ++.|.+|++.. ++
T Consensus 148 ~~v~v~d~~~~g---------------~l~~~~~~~~~~~~g-~~p~~~~~-~pdg~~lyv~~~~~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 148 DRIRLFTLSDDG---------------HLVAQEPAEVTTVEG-AGPRHMVF-HPNQQYAYCVNELNSSVDVWQLKDPHGE 210 (330)
T ss_pred CEEEEEEECCCC---------------cccccCCCceecCCC-CCCceEEE-CCCCCEEEEEecCCCEEEEEEEeCCCCC
Confidence 999999997631 110 11111111 12578898 899999988876 99999999973 32
Q ss_pred --eEEEeecCc------cceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCC-CCCCCCChh--hhhhhhccCCCCceeEE
Q 021484 182 --LVRLMVGDR------HVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTD-FPPLPDNAE--KIMKANKQGREDHSRIT 249 (312)
Q Consensus 182 --~~~~~~~~~------~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~l~s 249 (312)
.+..+..+. .....+.++|++++++++. .++.|.+|++.... ...+.++.. .......++++++++++
T Consensus 211 ~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 211 IECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEE
Confidence 233332211 1234688999999988875 47899999985432 111111111 11122345677777776
Q ss_pred ec-CCceEEEEEecc
Q 021484 250 LT-PDVIMHVLRLQR 263 (312)
Q Consensus 250 ~~-~d~~i~i~~~~~ 263 (312)
.. .++.+.+|++..
T Consensus 291 a~~~~~~v~v~~~~~ 305 (330)
T PRK11028 291 AGQKSHHISVYEIDG 305 (330)
T ss_pred EEccCCcEEEEEEcC
Confidence 55 488999998764
No 211
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=2.2e-13 Score=120.74 Aligned_cols=196 Identities=16% Similarity=0.131 Sum_probs=150.4
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-CCcEEEE
Q 021484 36 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-DELVYLF 114 (312)
Q Consensus 36 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iw 114 (312)
..+.-.+ ..++.++.+..+.+||...+.+...+...+... -....-+-++++.-+++++. -+.|.+|
T Consensus 93 ~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~-----------l~~~~~~g~s~~~~~i~~gsv~~~iivW 160 (967)
T KOG0974|consen 93 AKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT-----------LYSSLIIGDSAEELYIASGSVFGEIIVW 160 (967)
T ss_pred cchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEE-----------EEeEEEEeccCcEEEEEeccccccEEEE
Confidence 3344444 678888899999999998776443322211111 01122334455555788874 9999999
Q ss_pred EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE-EeecCccce
Q 021484 115 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR-LMVGDRHVV 193 (312)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~v 193 (312)
+.... +....+.+|.+. +.++.| +.+|.++++.++|.++++|++.+.+... ..-+|+.+|
T Consensus 161 ~~~~d----------------n~p~~l~GHeG~--iF~i~~-s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 161 KPHED----------------NKPIRLKGHEGS--IFSIVT-SLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred ecccc----------------CCcceecccCCc--eEEEEE-ccCCcEEEEEecCcceeeeecccccccCccccccccee
Confidence 98743 233368899977 999999 9999999999999999999999988766 566899999
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 194 NQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 194 ~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
..++|+|+ .++|++.|.+.++|+.....+..+.+|...-+-....+.+...++|++.|+.+++|++...
T Consensus 222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 222 WACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEEeccc--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 99999999 9999999999999988877777777777666555556778889999999999999987543
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=7.5e-13 Score=117.79 Aligned_cols=200 Identities=13% Similarity=0.149 Sum_probs=140.3
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEe-cCCcE
Q 021484 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-NDELV 111 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~d~~i 111 (312)
.-+.|..+.+ .|++++.-..|+|||....++ ...+..+....|+++.-+- .|.++++| .||.|
T Consensus 1169 ~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~--------------~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsv 1233 (1387)
T KOG1517|consen 1169 LVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQV--------------VADIPYGSSTLVTALSADLVHGNIIAAGFADGSV 1233 (1387)
T ss_pred eeeehhhhCC-eEEecCCeeEEEEEeccccee--------------EeecccCCCccceeecccccCCceEEEeecCCce
Confidence 4567877764 455555579999999987763 2333334455566665443 35778776 79999
Q ss_pred EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCC-EEEEeccCceEEEEeccCCeeE--EEeec
Q 021484 112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLV--RLMVG 188 (312)
Q Consensus 112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~--~~~~~ 188 (312)
++||.+.... -..+..++.|.....|..+.+ .+.|- .|++|+.+|.|++||++..... ..+..
T Consensus 1234 RvyD~R~a~~-------------ds~v~~~R~h~~~~~Iv~~sl-q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1234 RVYDRRMAPP-------------DSLVCVYREHNDVEPIVHLSL-QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred EEeecccCCc-------------cccceeecccCCcccceeEEe-ecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 9999987510 035566777876556888888 55443 5999999999999999864222 22333
Q ss_pred Cc--c-ceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCC------hhhhhhhhccCCCCceeEEecCCceEEEE
Q 021484 189 DR--H-VVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDN------AEKIMKANKQGREDHSRITLTPDVIMHVL 259 (312)
Q Consensus 189 ~~--~-~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~s~~~d~~i~i~ 259 (312)
|. + ..+++..|+..+.+|+|+. +.|+||++.+..+..+..+ ......+..+++-.-.+++|+.|+.|.++
T Consensus 1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred ccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 33 3 4899999999999999998 9999999988765444322 22223455566767788889999999998
Q ss_pred Eecc
Q 021484 260 RLQR 263 (312)
Q Consensus 260 ~~~~ 263 (312)
....
T Consensus 1379 s~~k 1382 (1387)
T KOG1517|consen 1379 SCEK 1382 (1387)
T ss_pred ecCC
Confidence 7543
No 213
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.6e-13 Score=110.29 Aligned_cols=165 Identities=13% Similarity=0.154 Sum_probs=121.7
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC---C-eE
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS---E-LL 103 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~-~l 103 (312)
.|...|.++.|+|++ .+|++-+.| ..+||+.+++..+... .+ .........+.|+.++ . ++
T Consensus 184 ~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~---------t~----~~k~~~~~~cRF~~d~~~~~l~l 248 (398)
T KOG0771|consen 184 AHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARK---------TP----FSKDEMFSSCRFSVDNAQETLRL 248 (398)
T ss_pred hhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhc---------CC----cccchhhhhceecccCCCceEEE
Confidence 488999999999999 899999998 9999999998532221 11 1223445567777766 2 44
Q ss_pred EEe-c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe
Q 021484 104 ISY-N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 181 (312)
Q Consensus 104 ~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~ 181 (312)
++. . -+.|+.|++....+... .+..+....+ +.|++++. +++|++++.|+.||.|.|++..+.+
T Consensus 249 aa~~~~~~~v~~~~~~~w~~~~~----------l~~~~~~~~~---~siSsl~V-S~dGkf~AlGT~dGsVai~~~~~lq 314 (398)
T KOG0771|consen 249 AASQFPGGGVRLCDISLWSGSNF----------LRLRKKIKRF---KSISSLAV-SDDGKFLALGTMDGSVAIYDAKSLQ 314 (398)
T ss_pred EEecCCCCceeEEEeeeeccccc----------cchhhhhhcc---CcceeEEE-cCCCcEEEEeccCCcEEEEEeceee
Confidence 443 3 66788887765421100 0111122222 23899998 9999999999999999999999888
Q ss_pred eEEEe-ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484 182 LVRLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 182 ~~~~~-~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
.+... +.|...|+.+.|+|+.+++++.+.|.++.|..+.-
T Consensus 315 ~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 315 RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 87766 47999999999999999999999999999988765
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.53 E-value=4.9e-12 Score=98.51 Aligned_cols=158 Identities=15% Similarity=0.200 Sum_probs=115.6
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCC-eecCCCCCCCCcccccccccccCCCccEEEEEEccCC--CeEEE-
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKC-HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLIS- 105 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s- 105 (312)
..+|.++.+.++ .+++. ..+.|++|...+. +... .+ .. ........ +..|.. .+||.
T Consensus 94 ~~~I~~V~l~r~---riVvv-l~~~I~VytF~~n~k~l~---------~~--et--~~NPkGlC--~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 94 NSEIKAVKLRRD---RIVVV-LENKIYVYTFPDNPKLLH---------VI--ET--RSNPKGLC--SLCPTSNKSLLAFP 154 (346)
T ss_pred ccceeeEEEcCC---eEEEE-ecCeEEEEEcCCChhhee---------ee--ec--ccCCCceE--eecCCCCceEEEcC
Confidence 568999999985 34444 3578999998732 2111 00 00 11122222 334432 36666
Q ss_pred e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCce-EEEEeccCCeeE
Q 021484 106 Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-LFIWKKKGGKLV 183 (312)
Q Consensus 106 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~-v~iwd~~~~~~~ 183 (312)
+ .-|+|+|-|+.... ......+..|... |.+++. +.+|..+|+++..|+ |+|||..+|.++
T Consensus 155 g~k~GqvQi~dL~~~~--------------~~~p~~I~AH~s~--Iacv~L-n~~Gt~vATaStkGTLIRIFdt~~g~~l 217 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTK--------------PNAPSIINAHDSD--IACVAL-NLQGTLVATASTKGTLIRIFDTEDGTLL 217 (346)
T ss_pred CCccceEEEEEhhhcC--------------cCCceEEEcccCc--eeEEEE-cCCccEEEEeccCcEEEEEEEcCCCcEe
Confidence 4 38999999997651 0134778889977 999998 999999999999887 799999999999
Q ss_pred EEeecC--ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 184 RLMVGD--RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 184 ~~~~~~--~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
.+++.. ...|++++|||+..+||.+|.-|+|.|+.++...
T Consensus 218 ~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 218 QELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred eeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 998743 3579999999999999999999999999987644
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.52 E-value=1.7e-14 Score=117.21 Aligned_cols=188 Identities=14% Similarity=0.241 Sum_probs=145.2
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021484 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 109 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~ 109 (312)
..|.++.|-.+. ++||++ ....++|||-..-++- |. .. ...|..+.|-|..-+|+++ ..|
T Consensus 171 Etv~Dv~~LHne-q~~AVA-QK~y~yvYD~~GtElH------------Cl----k~-~~~v~rLeFLPyHfLL~~~~~~G 231 (545)
T KOG1272|consen 171 ETVRDVTFLHNE-QFFAVA-QKKYVYVYDNNGTELH------------CL----KR-HIRVARLEFLPYHFLLVAASEAG 231 (545)
T ss_pred hhhhhhhhhcch-HHHHhh-hhceEEEecCCCcEEe------------eh----hh-cCchhhhcccchhheeeecccCC
Confidence 357788887765 566655 6688999997654422 22 22 2457889999987788886 589
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 189 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 189 (312)
.++.-|+..+ +.+..+....+. +..++- +|-.-.+-+|...|+|.+|.....+++..+..|
T Consensus 232 ~L~Y~DVS~G----------------klVa~~~t~~G~--~~vm~q-NP~NaVih~GhsnGtVSlWSP~skePLvKiLcH 292 (545)
T KOG1272|consen 232 FLKYQDVSTG----------------KLVASIRTGAGR--TDVMKQ-NPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCH 292 (545)
T ss_pred ceEEEeechh----------------hhhHHHHccCCc--cchhhc-CCccceEEEcCCCceEEecCCCCcchHHHHHhc
Confidence 9999999998 787777766654 666766 888899999999999999999999999999999
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484 190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 190 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.++|.++++.|+|+|++|.+.|..++|||++... +.++.. ... ....+.....+++.+....+.+|.
T Consensus 293 ~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~--a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 293 RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHP--ASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec--CCC--ccccccccccceeeecCCeeeeeh
Confidence 9999999999999999999999999999999865 333321 111 111333456788888899999995
No 216
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2.5e-13 Score=108.54 Aligned_cols=179 Identities=13% Similarity=0.145 Sum_probs=132.5
Q ss_pred ccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEE
Q 021484 76 DTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVN 154 (312)
Q Consensus 76 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 154 (312)
+.||.+.+ .+|.+.|.+|.|+.++++|+++ .|..+++|++...-. -.+.+++. +.+|.....|.+++
T Consensus 45 R~~~qKD~-~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~----------~k~~KPI~-~~~~~H~SNIF~L~ 112 (609)
T KOG4227|consen 45 RPFCQKDV-REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV----------RKTPKPIG-VMEHPHRSNIFSLE 112 (609)
T ss_pred cchhhhhh-hhhccccceeeeccCCeEEeecCCcceeeeechHHHHh----------hcCCCCce-eccCccccceEEEE
Confidence 44555555 7899999999999999999997 589999999864200 00002333 33444434599999
Q ss_pred EecCCCCEEEEeccCceEEEEeccCCeeEEEeec--CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-C--CCCCC
Q 021484 155 FFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-F--PPLPD 229 (312)
Q Consensus 155 ~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~--~~~~~ 229 (312)
| +....++++|..+++|...|+.+.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||.+... . ..++.
T Consensus 113 F-~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A 191 (609)
T KOG4227|consen 113 F-DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA 191 (609)
T ss_pred E-ccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec
Confidence 9 88899999999999999999999988877652 23589999999999999999999999999987654 1 11223
Q ss_pred ChhhhhhhhccCC-CCceeEEecCCceEEEEEecccCcc
Q 021484 230 NAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 230 ~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
.....+..+.+.+ +..++++.+..+-+-+||++..+..
T Consensus 192 N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~ 230 (609)
T KOG4227|consen 192 NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARP 230 (609)
T ss_pred CCCccceeeeecCCCceeEEeccccCCCCceeeccccch
Confidence 3333344444556 5677888888888999998765433
No 217
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=2e-12 Score=98.84 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=104.0
Q ss_pred EEEEEccCCCeEEE-ec---C-------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC
Q 021484 92 TGLAYSNTSELLIS-YN---D-------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND 160 (312)
Q Consensus 92 ~~~~~~~~~~~l~s-~~---d-------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~ 160 (312)
..+.|+|+|.+|+. .. | +...+|.++... .....+.-... .+|.+++| +|++
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~---------------~~~~~i~l~~~-~~I~~~~W-sP~g 71 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN---------------IPVESIELKKE-GPIHDVAW-SPNG 71 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC---------------CccceeeccCC-CceEEEEE-CcCC
Confidence 46889999986554 22 2 224455553221 23333433222 23999999 9999
Q ss_pred CEEEEe--ccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEccCCCCCCCCCCCChhhhh
Q 021484 161 EYVMSG--SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPLPDNAEKIM 235 (312)
Q Consensus 161 ~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~ 235 (312)
+.|++. ..++.|.+||++ ++.+..+. ...++.+.|+|+|++|++++. .|.|.+||.+..+......+.. .
T Consensus 72 ~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~--~ 146 (194)
T PF08662_consen 72 NEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD--A 146 (194)
T ss_pred CEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc--E
Confidence 987544 467899999997 67676664 457789999999999998874 4679999999766433222333 3
Q ss_pred hhhccCCCCceeEEecC------CceEEEEEeccc
Q 021484 236 KANKQGREDHSRITLTP------DVIMHVLRLQRR 264 (312)
Q Consensus 236 ~~~~~~~~~~~l~s~~~------d~~i~i~~~~~~ 264 (312)
....|+++++++++.+. |..++||++...
T Consensus 147 t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 147 TDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 45679999999998764 688899997543
No 218
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.50 E-value=1.8e-12 Score=101.50 Aligned_cols=212 Identities=16% Similarity=0.093 Sum_probs=132.7
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec--
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-- 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-- 107 (312)
..++.+++|+|+|..+|.+..-+-.|.+|.+.+.+.... ......+..++|+|+|++.+..+
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~----------------~~pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL----------------PHPKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe----------------cccccCceeEEECCCCceeeeeecc
Confidence 568999999999988888889999999999998763211 12233456778888887665542
Q ss_pred CCc--E-----------EEEEcCCCc------CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc
Q 021484 108 DEL--V-----------YLFEKNMGL------GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD 168 (312)
Q Consensus 108 d~~--i-----------~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~ 168 (312)
|-. + +-+++.+-. .|....+-+|+.. -..+.+.-+.+ -.+..++| +|.+++|+.|+.
T Consensus 155 DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~--Leykv~aYe~~-lG~k~v~w-sP~~qflavGsy 230 (447)
T KOG4497|consen 155 DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV--LEYKVYAYERG-LGLKFVEW-SPCNQFLAVGSY 230 (447)
T ss_pred cHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch--hhheeeeeeec-cceeEEEe-ccccceEEeecc
Confidence 322 1 111111110 1222222222211 01111112221 12888999 999999999999
Q ss_pred CceEEEEeccCCeeEE------------------------------------------------------------Eee-
Q 021484 169 CGHLFIWKKKGGKLVR------------------------------------------------------------LMV- 187 (312)
Q Consensus 169 dg~v~iwd~~~~~~~~------------------------------------------------------------~~~- 187 (312)
|+.+++.+--+-++.. .++
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 9999886633222110 111
Q ss_pred -----cCccceEEEEEcCCCCeEEEEe--CCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484 188 -----GDRHVVNQLEPHPHIPMFATCG--IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 188 -----~~~~~v~~~~~~p~~~~l~t~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.....+.-++|++|..+++|-. .-..+-+||++..++..+.....++. ...|.+....|+.......+++|.
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~pir-af~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIR-AFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcccee-EEEeCCCCceEEEEcCCceEEEEc
Confidence 0112456689999999998876 33679999999988766654555553 444778777777777778899997
Q ss_pred ec
Q 021484 261 LQ 262 (312)
Q Consensus 261 ~~ 262 (312)
..
T Consensus 390 ps 391 (447)
T KOG4497|consen 390 PS 391 (447)
T ss_pred CC
Confidence 54
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.49 E-value=7.5e-13 Score=103.03 Aligned_cols=158 Identities=14% Similarity=0.146 Sum_probs=127.6
Q ss_pred CccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe
Q 021484 88 NIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 166 (312)
Q Consensus 88 ~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~ 166 (312)
..+|++.+|++++..+|.+ ....|.||...+.. ..+...++..|... |+.++| +|..+.|++|
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-------------~w~~~htls~Hd~~--vtgvdW-ap~snrIvtc 73 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-------------LWEPAHTLSEHDKI--VTGVDW-APKSNRIVTC 73 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC-------------CceeceehhhhCcc--eeEEee-cCCCCceeEc
Confidence 5689999999999988887 67899999887651 12567778888865 999999 9999999999
Q ss_pred ccCceEEEEec-cCC--eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC----CCCCCChhhhhhhhc
Q 021484 167 SDCGHLFIWKK-KGG--KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF----PPLPDNAEKIMKANK 239 (312)
Q Consensus 167 ~~dg~v~iwd~-~~~--~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~ 239 (312)
+.|..-++|.. ..+ ++...+..+...++++.|+|.++.||+|+..+.|.||-++.+.- +.+.......+....
T Consensus 74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld 153 (361)
T KOG1523|consen 74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD 153 (361)
T ss_pred cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence 99999999998 333 44555667888999999999999999999999999999887651 222222333345666
Q ss_pred cCCCCceeEEecCCceEEEEEe
Q 021484 240 QGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 240 ~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
|++++-+|++|+.|+..+++..
T Consensus 154 WhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 154 WHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred ccCCcceecccccCcceeEEEE
Confidence 8999999999999999999964
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=5.2e-12 Score=109.07 Aligned_cols=185 Identities=11% Similarity=0.045 Sum_probs=113.5
Q ss_pred CccceEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
+...+.+.+|+|++ +.|+..+. ...|.+||+.+++.. .+ ......+...+|+|+|+.|+.
T Consensus 194 ~~~~v~~p~wSPDG-~~la~~s~~~~~~~I~~~dl~~g~~~---------------~l-~~~~g~~~~~~~SPDG~~la~ 256 (427)
T PRK02889 194 SPEPIISPAWSPDG-TKLAYVSFESKKPVVYVHDLATGRRR---------------VV-ANFKGSNSAPAWSPDGRTLAV 256 (427)
T ss_pred CCCCcccceEcCCC-CEEEEEEccCCCcEEEEEECCCCCEE---------------Ee-ecCCCCccceEECCCCCEEEE
Confidence 46678999999999 66665543 245999999877521 01 112334567899999986654
Q ss_pred -e-cCCcEEEE--EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEe--cc
Q 021484 106 -Y-NDELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWK--KK 178 (312)
Q Consensus 106 -~-~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd--~~ 178 (312)
. .++...+| |+.++ ..+.+..+... .....| +|+|+.|+..+. +|...+|. +.
T Consensus 257 ~~~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~w-SpDG~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 257 ALSRDGNSQIYTVNADGS-----------------GLRRLTQSSGI--DTEPFF-SPDGRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred EEccCCCceEEEEECCCC-----------------CcEECCCCCCC--CcCeEE-cCCCCEEEEEecCCCCcEEEEEECC
Confidence 4 47665555 44443 23344433322 566788 999998876554 45555554 44
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484 179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
+++.. .+..+.......+|+|+|++++..+.++ .|.+||+.++....+..... .....|+++++.++..+.+
T Consensus 317 ~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~~--~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 317 GGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTTR--DESPSFAPNGRYILYATQQ 391 (427)
T ss_pred CCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCCC--ccCceECCCCCEEEEEEec
Confidence 44432 2222223344678999999988776554 69999998876544432211 1233467777766655543
No 221
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.4e-12 Score=112.74 Aligned_cols=161 Identities=11% Similarity=0.039 Sum_probs=103.3
Q ss_pred eEEEEEcCCCCcEEEEE-eCCCeEEEE--EccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e-c
Q 021484 33 LNAIVIDPRNPNYFAVG-GSDEYARVY--DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-N 107 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~-~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~ 107 (312)
...++|+|++ +.|+.+ +.+|.+.|| |+.+++. ..+ ..+...+....|+|+|+.|+. + .
T Consensus 250 ~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~~---------------~~l-t~~~~~~~~~~wSpDG~~i~f~s~~ 312 (429)
T PRK01742 250 NGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGTP---------------SQL-TSGAGNNTEPSWSPDGQSILFTSDR 312 (429)
T ss_pred cCceeECCCC-CEEEEEEecCCcEEEEEEECCCCCe---------------Eee-ccCCCCcCCEEECCCCCEEEEEECC
Confidence 3468999999 555554 568876666 5544431 111 334556778999999996655 4 3
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 187 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 187 (312)
++...||++.... .....+ .+.. ....| +|+|++|+..+.++ +.+||+.+++......
T Consensus 313 ~g~~~I~~~~~~~---------------~~~~~l-~~~~----~~~~~-SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~ 370 (429)
T PRK01742 313 SGSPQVYRMSASG---------------GGASLV-GGRG----YSAQI-SADGKTLVMINGDN-VVKQDLTSGSTEVLSS 370 (429)
T ss_pred CCCceEEEEECCC---------------CCeEEe-cCCC----CCccC-CCCCCEEEEEcCCC-EEEEECCCCCeEEecC
Confidence 7788888765421 112222 2221 34677 99999998887765 5569998887543322
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEccC---CCCCCCCCCCChhhh
Q 021484 188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP---MPTDFPPLPDNAEKI 234 (312)
Q Consensus 188 ~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~---~~~~~~~~~~~~~~~ 234 (312)
.+ ....+.|+|+|++++.++.++.+++|.+ .......+..+...+
T Consensus 371 ~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~ 418 (429)
T PRK01742 371 TF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQV 418 (429)
T ss_pred CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCC
Confidence 22 2356789999999999998998887764 344445555444434
No 222
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.48 E-value=2.9e-13 Score=117.55 Aligned_cols=212 Identities=17% Similarity=0.229 Sum_probs=138.9
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
+||.+.|+.++.+.++ .++++++.|..|++|.+..+. +..++.+|.+.|++|+|+|-. .++
T Consensus 229 rGhs~ditdlavs~~n-~~iaaaS~D~vIrvWrl~~~~---------------pvsvLrghtgavtaiafsP~~---sss 289 (1113)
T KOG0644|consen 229 RGHSGDITDLAVSSNN-TMIAAASNDKVIRVWRLPDGA---------------PVSVLRGHTGAVTAIAFSPRA---SSS 289 (1113)
T ss_pred CCCccccchhccchhh-hhhhhcccCceEEEEecCCCc---------------hHHHHhccccceeeeccCccc---cCC
Confidence 6899999999999988 799999999999999999885 444558999999999999965 445
Q ss_pred cCCcEEEEEcC-CCc--CCCCCcCCccc-------------ccCCCCCce--------EecccCCceeeEEEEecCCCCE
Q 021484 107 NDELVYLFEKN-MGL--GPSPLSLSPED-------------LQKREEPQV--------YSGHRNSQTVKGVNFFGPNDEY 162 (312)
Q Consensus 107 ~d~~i~iwd~~-~~~--~~~~~~~~~~~-------------~~~~~~~~~--------~~~~~~~~~v~~v~~~s~~~~~ 162 (312)
.||++++||.+ ... .|.+..+...+ +.++..--. +..+... +.-+.+.+....+
T Consensus 290 ~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~--lif~t~ssd~~~~ 367 (1113)
T KOG0644|consen 290 DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNL--LIFVTRSSDLSSI 367 (1113)
T ss_pred CCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccc--eEEEecccccccc
Confidence 69999999987 111 01111110000 111000000 0011110 1111111111234
Q ss_pred EEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCCC-CC-CCCChhhhhhhhc
Q 021484 163 VMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTDF-PP-LPDNAEKIMKANK 239 (312)
Q Consensus 163 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~~-~~-~~~~~~~~~~~~~ 239 (312)
.+++-.+-.+++|++.+|+..+.+.+|...++.+.+||-+.. ..+++.||...|||+-.+.. .. ..+|. .+ -..+
T Consensus 368 ~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl-~d~k 445 (1113)
T KOG0644|consen 368 VVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KL-VDGK 445 (1113)
T ss_pred ceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-ee-eccc
Confidence 455556778999999999999999999999999999997765 67889999999999877653 22 22222 22 2334
Q ss_pred cCCCCceeEEecCCceEEEEEe
Q 021484 240 QGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 240 ~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
++.++..++....-|.+.|+..
T Consensus 446 FSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 446 FSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred cCCCCceEecCCCCCceEEecc
Confidence 6666655555444566666653
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=5.3e-12 Score=108.96 Aligned_cols=165 Identities=13% Similarity=0.095 Sum_probs=105.5
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c-
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N- 107 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~- 107 (312)
.+...+|+|++..++++.+.+| .|++||+.+++.. .+ ..+...+....|+|+|+.|+.. .
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~---------------~l-t~~~~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR---------------QV-TDGRSNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE---------------Ec-cCCCCCcCceEECCCCCEEEEEeCC
Confidence 3456899999944444545555 5888999877521 11 2223456788999999977654 3
Q ss_pred CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC---ceEEEEeccCCee
Q 021484 108 DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGGKL 182 (312)
Q Consensus 108 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---g~v~iwd~~~~~~ 182 (312)
++ .|+++++.++ ....+...... .....| +|+|++|+..+.+ ..|.+||+.+++.
T Consensus 308 ~g~~~Iy~~d~~~g-----------------~~~~lt~~~~~--~~~~~~-SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 308 AGRPQVYKVNINGG-----------------APQRITWEGSQ--NQDADV-SSDGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred CCCceEEEEECCCC-----------------CeEEeecCCCC--ccCEEE-CCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 34 4555566554 22333333322 556788 9999998776543 3588899988764
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCc---EEEccCCCCCCCCCCCChhhh
Q 021484 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKT---VKLWAPMPTDFPPLPDNAEKI 234 (312)
Q Consensus 183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~---i~iwd~~~~~~~~~~~~~~~~ 234 (312)
. .+... .......|+|+|+.++.++.++. +.++++.+.....+..+...+
T Consensus 368 ~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~ 420 (429)
T PRK03629 368 Q-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQV 420 (429)
T ss_pred E-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCc
Confidence 3 33321 22346789999999988887764 778888766665565544443
No 224
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=2.2e-11 Score=105.52 Aligned_cols=185 Identities=11% Similarity=0.051 Sum_probs=118.5
Q ss_pred CccceEEEEEcCCCCcEEEEEeCC---CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
+...+...+|+|++ +.|+.+..+ ..|++||+.+++.. .+ ..+...+.+++|+|+|+.|+.
T Consensus 188 ~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~---------------~~-~~~~~~~~~~~~spDg~~l~~ 250 (417)
T TIGR02800 188 SREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQRE---------------KV-ASFPGMNGAPAFSPDGSKLAV 250 (417)
T ss_pred CCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEE---------------Ee-ecCCCCccceEECCCCCEEEE
Confidence 34568889999999 666665433 47999999877521 11 223345567899999985553
Q ss_pred -ec-C--CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEecc
Q 021484 106 -YN-D--ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKK 178 (312)
Q Consensus 106 -~~-d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~ 178 (312)
.. + ..|++|++.++ ....+..+... .....| +|++++|+..+. .+ .|+++++.
T Consensus 251 ~~~~~~~~~i~~~d~~~~-----------------~~~~l~~~~~~--~~~~~~-s~dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGK-----------------QLTRLTNGPGI--DTEPSW-SPDGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred EECCCCCccEEEEECCCC-----------------CEEECCCCCCC--CCCEEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence 32 3 46899998765 22333333322 456678 899998876554 33 68888888
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484 179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
+++.. .+..+...+..+.|+|++++++.++.++ .|.+||+.++....+..... . ....+++++..++..+.+
T Consensus 311 ~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~-~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 311 GGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGL-D-ESPSFAPNGRMILYATTR 385 (417)
T ss_pred CCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCC-C-CCceECCCCCEEEEEEeC
Confidence 76643 4443455667889999999988888765 78899988765433332211 1 122356666666555444
No 225
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=1.6e-12 Score=103.78 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=129.0
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCC--CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR--NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTF 78 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 78 (312)
+++||+... .++++.++.+.....---+--++++.|-+. . +.|++++.-+.+++||.+.++ +|+..|
T Consensus 175 lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qR--------RPV~~f 243 (412)
T KOG3881|consen 175 LKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQR--------RPVAQF 243 (412)
T ss_pred eeeeecccc--eeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccC--------cceeEe
Confidence 579999875 788888877654333223445678889875 4 799999999999999999775 455544
Q ss_pred cccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCce-EecccCCceeeEEEEe
Q 021484 79 CPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNFF 156 (312)
Q Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~ 156 (312)
.-...+++++...|.++++.++ .-+.+..||++++ +.... +.+..+. ++++..
T Consensus 244 ------d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~----------------kl~g~~~kg~tGs--irsih~- 298 (412)
T KOG3881|consen 244 ------DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG----------------KLLGCGLKGITGS--IRSIHC- 298 (412)
T ss_pred ------ccccCcceeeeecCCCcEEEEecccchhheecccCc----------------eeeccccCCccCC--cceEEE-
Confidence 3346789999999999998888 5999999999987 55544 7777766 999998
Q ss_pred cCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCC
Q 021484 157 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIP 203 (312)
Q Consensus 157 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~ 203 (312)
+|.++++++++-|..|+|+|+.+.+++..... ...++++.+.++-+
T Consensus 299 hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~~~n 344 (412)
T KOG3881|consen 299 HPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRDDVN 344 (412)
T ss_pred cCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecCCcc
Confidence 89999999999999999999999777655442 34567777765543
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=1.8e-11 Score=95.47 Aligned_cols=159 Identities=10% Similarity=0.095 Sum_probs=121.4
Q ss_pred CccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE-e
Q 021484 88 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS-G 166 (312)
Q Consensus 88 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~-~ 166 (312)
..+|.++.+.++ .|+...++.|+||...+.. +.+..+....+++-+.+++- ..+..+|+. |
T Consensus 94 ~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~---------------k~l~~~et~~NPkGlC~~~~-~~~k~~LafPg 155 (346)
T KOG2111|consen 94 NSEIKAVKLRRD--RIVVVLENKIYVYTFPDNP---------------KLLHVIETRSNPKGLCSLCP-TSNKSLLAFPG 155 (346)
T ss_pred ccceeeEEEcCC--eEEEEecCeEEEEEcCCCh---------------hheeeeecccCCCceEeecC-CCCceEEEcCC
Confidence 567889988765 6777788999999998541 55666665554444666653 334445543 4
Q ss_pred ccCceEEEEeccCCee--EEEeecCccceEEEEEcCCCCeEEEEeCCCc-EEEccCCCCCC-CCCC-CChhhhhhhhccC
Q 021484 167 SDCGHLFIWKKKGGKL--VRLMVGDRHVVNQLEPHPHIPMFATCGIEKT-VKLWAPMPTDF-PPLP-DNAEKIMKANKQG 241 (312)
Q Consensus 167 ~~dg~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~-i~iwd~~~~~~-~~~~-~~~~~~~~~~~~~ 241 (312)
-.-|.|.|-|+...+. -..+.+|...|.+++.+.+|..+||+|..|+ |||||..+++. ..+. +...+-+....++
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 5679999999876554 4678899999999999999999999999997 79999998873 4443 4444455666789
Q ss_pred CCCceeEEecCCceEEEEEeccc
Q 021484 242 REDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 242 ~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
++..+|+..+.-|+++|+.++..
T Consensus 236 p~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 236 PNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999998753
No 227
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.42 E-value=1.1e-12 Score=111.55 Aligned_cols=147 Identities=16% Similarity=0.261 Sum_probs=119.4
Q ss_pred cEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC
Q 021484 90 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 169 (312)
Q Consensus 90 ~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d 169 (312)
.|..++|.|||..|+.+.+..+.+||...+ ..++++++|++. |.+++| +.+|+.+++|+.|
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG----------------~llqtLKgHKDt--VycVAy-s~dGkrFASG~aD 74 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDG----------------TLLQPLKGHKDT--VYCVAY-AKDGKRFASGSAD 74 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCc----------------ccccccccccce--EEEEEE-ccCCceeccCCCc
Confidence 688999999999998888999999999988 799999999976 999999 9999999999999
Q ss_pred ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEE
Q 021484 170 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT 249 (312)
Q Consensus 170 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 249 (312)
..|.+|...- +-+.. ..|...|.++.|+|-...+++++. ...-+|......+.... ....+ ....|..++.+++-
T Consensus 75 K~VI~W~~kl-EG~Lk-YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~k-ss~R~-~~CsWtnDGqylal 149 (1081)
T KOG1538|consen 75 KSVIIWTSKL-EGILK-YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKHK-SSSRI-ICCSWTNDGQYLAL 149 (1081)
T ss_pred eeEEEecccc-cceee-eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhhh-hheeE-EEeeecCCCcEEEE
Confidence 9999998652 22222 259999999999999999999984 35678887655443222 12223 33347789999999
Q ss_pred ecCCceEEEEE
Q 021484 250 LTPDVIMHVLR 260 (312)
Q Consensus 250 ~~~d~~i~i~~ 260 (312)
|-.+|+|.+-+
T Consensus 150 G~~nGTIsiRN 160 (1081)
T KOG1538|consen 150 GMFNGTISIRN 160 (1081)
T ss_pred eccCceEEeec
Confidence 99999998876
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=2.7e-11 Score=105.02 Aligned_cols=158 Identities=11% Similarity=0.022 Sum_probs=101.9
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec--
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-- 107 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-- 107 (312)
...+.+|+|++..++++.+.+| .|++||+.+++.. .+ ..+.......+|+|+|+.|+..+
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~---------------~l-t~~~~~~~~~~~spDG~~l~f~sd~ 312 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT---------------RL-TNHFGIDTEPTWAPDGKSIYFTSDR 312 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE---------------EC-ccCCCCccceEECCCCCEEEEEECC
Confidence 3457899999955555666655 5999999877521 11 23333456789999999776643
Q ss_pred CCc--EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc---eEEEEeccCCee
Q 021484 108 DEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKL 182 (312)
Q Consensus 108 d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~ 182 (312)
++. |+++++.++ + .+.+..... .....+| +|+|++|+..+.++ .|.+||+.+++.
T Consensus 313 ~g~~~iy~~dl~~g----------------~-~~~lt~~g~--~~~~~~~-SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 313 GGRPQIYRVAASGG----------------S-AERLTFQGN--YNARASV-SPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred CCCceEEEEECCCC----------------C-eEEeecCCC--CccCEEE-CCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 444 777777654 2 222322222 2456888 99999988765433 699999988765
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCCCCC
Q 021484 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPL 227 (312)
Q Consensus 183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~ 227 (312)
. .+. +........|+|+|++++..+.+ +.|.++++.+.....+
T Consensus 373 ~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l 418 (433)
T PRK04922 373 R-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRL 418 (433)
T ss_pred E-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEc
Confidence 4 443 22344567999999987766643 4577888866544434
No 229
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.7e-10 Score=100.15 Aligned_cols=183 Identities=11% Similarity=0.009 Sum_probs=112.1
Q ss_pred CccceEEEEEcCCCCcEEEEEe-CC--CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGG-SD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
+...+...+|+|++ +.|+..+ .+ ..|.+|++.+++... + ....+.+...+|+|+|+.|+.
T Consensus 197 ~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~---------------l-~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 197 SREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQ---------------I-TNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred CCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEE---------------c-cCCCCCcCCeEECCCCCEEEE
Confidence 45678899999999 5655544 32 468899998775211 1 111233446899999986664
Q ss_pred -e-cCC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-C--ceEEEEecc
Q 021484 106 -Y-NDE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-C--GHLFIWKKK 178 (312)
Q Consensus 106 -~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-d--g~v~iwd~~ 178 (312)
. .++ .|++||+.++ ....+..+... .....| +|+++.|+..+. + ..|+++++.
T Consensus 260 ~~~~~g~~~Iy~~d~~~~-----------------~~~~lt~~~~~--~~~~~~-spDg~~i~f~s~~~g~~~iy~~d~~ 319 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASR-----------------QLSRVTNHPAI--DTEPFW-GKDGRTLYFTSDRGGKPQIYKVNVN 319 (430)
T ss_pred EEccCCCceEEEEECCCC-----------------CeEEcccCCCC--cCCeEE-CCCCCEEEEEECCCCCceEEEEECC
Confidence 3 344 6888898875 22334433322 566788 999998766553 3 367788887
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEEeCC-C--cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEec
Q 021484 179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-K--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLT 251 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~ 251 (312)
+++... +...........|+|+++.++..+.+ + .|.+||+.++....+..... . ....+++++..++..+
T Consensus 320 ~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~-~-~~p~~spdg~~i~~~~ 392 (430)
T PRK00178 320 GGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSL-D-ESPSVAPNGTMLIYAT 392 (430)
T ss_pred CCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCC-C-CCceECCCCCEEEEEE
Confidence 776433 22122233457899999998776643 3 58889988876544432111 1 1223666666655443
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=9.8e-11 Score=101.65 Aligned_cols=206 Identities=9% Similarity=0.056 Sum_probs=128.9
Q ss_pred CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec----CCcEEEEEcCCCcCCCCCcCC
Q 021484 53 EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----DELVYLFEKNMGLGPSPLSLS 128 (312)
Q Consensus 53 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----d~~i~iwd~~~~~~~~~~~~~ 128 (312)
..|.++|..... ...+ ..|...+...+|+|+|+.|+..+ +..|++||+.++
T Consensus 182 ~~l~~~d~dg~~---------------~~~l-t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g--------- 236 (435)
T PRK05137 182 KRLAIMDQDGAN---------------VRYL-TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG--------- 236 (435)
T ss_pred eEEEEECCCCCC---------------cEEE-ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC---------
Confidence 378888876443 2222 45677899999999999766632 468999999876
Q ss_pred cccccCCCCCceEecccCCceeeEEEEecCCCCEEE-EeccCc--eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeE
Q 021484 129 PEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM-SGSDCG--HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMF 205 (312)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~-~~~~dg--~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l 205 (312)
+ .+.+..+... +...+| +|+|+.|+ +.+.++ .|++||+.+++. ..+..+........|+|+|+.+
T Consensus 237 -------~-~~~l~~~~g~--~~~~~~-SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i 304 (435)
T PRK05137 237 -------Q-RELVGNFPGM--TFAPRF-SPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQI 304 (435)
T ss_pred -------c-EEEeecCCCc--ccCcEE-CCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEE
Confidence 2 2344444433 677888 99998775 455555 477889887765 4455565666789999999988
Q ss_pred EEEeC-CC--cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC---ceEEEEEecccCccc--------eeE
Q 021484 206 ATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD---VIMHVLRLQRRQTLA--------YRE 271 (312)
Q Consensus 206 ~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~i~~~~~~~~~~--------~~~ 271 (312)
+..+. ++ .|.++|+.++....+....... ....|++++..++..+.+ ..+.+|++....... ...
T Consensus 305 ~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~-~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~~~~~p~ 383 (435)
T PRK05137 305 VFESDRSGSPQLYVMNADGSNPRRISFGGGRY-STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGFLVEGPT 383 (435)
T ss_pred EEEECCCCCCeEEEEECCCCCeEEeecCCCcc-cCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCCCCCCCe
Confidence 77663 33 6888898877654443222222 233478888877665433 356777764322111 114
Q ss_pred eecCCCccCCCC--CC----CeEEEeecCCC
Q 021484 272 RRYNAADFESDE--EE----GETYLLGFSDS 296 (312)
Q Consensus 272 ~~~~~~~~~~~~--~~----~~v~~~~~~~~ 296 (312)
++|++..+.... .. ..+|.++.+.+
T Consensus 384 ~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 384 WAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred ECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 555655543321 11 35777777544
No 231
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=5.7e-11 Score=104.05 Aligned_cols=204 Identities=14% Similarity=0.206 Sum_probs=146.6
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEE
Q 021484 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVY 112 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~ 112 (312)
.++.+++.+ ++.+.. .+..+.+|+..++. ...+....-..|.-.+++.+++|++.++|++ .||+|.
T Consensus 164 ~~I~~~~~g-e~~~i~-~~~~~~~~~v~~~~-----------~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~ 230 (792)
T KOG1963|consen 164 KSIVDNNSG-EFKGIV-HMCKIHIYFVPKHT-----------KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRIL 230 (792)
T ss_pred ccEEEcCCc-eEEEEE-EeeeEEEEEecccc-----------eeeccchhhhhhcccceeEEeccccceEEEeccCCcEE
Confidence 567777876 455444 45778889988643 1113333335677779999999999999998 599999
Q ss_pred EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccc
Q 021484 113 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV 192 (312)
Q Consensus 113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 192 (312)
+|.--.... .......+.-|... |.+++| +++|.+|++|+.+|.+.+|.+.+++ .+-++.-.++
T Consensus 231 vw~d~~~~~------------~~~t~t~lHWH~~~--V~~L~f-S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~ 294 (792)
T KOG1963|consen 231 VWRDFGSSD------------DSETCTLLHWHHDE--VNSLSF-SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSP 294 (792)
T ss_pred EEecccccc------------ccccceEEEecccc--cceeEE-ecCCceEeecccceEEEEEeecCCC-cccccccCCe
Confidence 996433100 00344667777766 999999 9999999999999999999999988 4455666789
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCC---C-------hhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484 193 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPD---N-------AEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 193 v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~---~-------~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
|..+.++|++.+.+....|..|.+-...+..+ .++.+ . ...........+..+.++-.+..+.++.+|+
T Consensus 295 I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 295 ILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred eEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence 99999999999999999999999988755432 11111 1 1222233334444567777888899999998
Q ss_pred cccCc
Q 021484 262 QRRQT 266 (312)
Q Consensus 262 ~~~~~ 266 (312)
.+...
T Consensus 375 ~td~~ 379 (792)
T KOG1963|consen 375 YTDST 379 (792)
T ss_pred cccce
Confidence 76543
No 232
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.38 E-value=2.4e-12 Score=120.16 Aligned_cols=190 Identities=13% Similarity=0.195 Sum_probs=144.3
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
|-..|.++.=||.. -+.+||+.||.+++|....++.+. +.. ..-...++.+.|+.+|..+..+ .
T Consensus 2207 ~v~~v~r~~sHp~~-~~Yltgs~dgsv~~~~w~~~~~v~-----------~~r---t~g~s~vtr~~f~~qGnk~~i~d~ 2271 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSD-PYYLTGSQDGSVRMFEWGHGQQVV-----------CFR---TAGNSRVTRSRFNHQGNKFGIVDG 2271 (2439)
T ss_pred ccCceeeecCCCCC-ceEEecCCCceEEEEeccCCCeEE-----------Eee---ccCcchhhhhhhcccCCceeeecc
Confidence 34568888889988 589999999999999998776321 111 2223788999999999877776 6
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec---cCceEEEEecc--CCee
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKK--GGKL 182 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~---~dg~v~iwd~~--~~~~ 182 (312)
||.+.+|.+.. ++....+.|... ..+..|. +..+++++ .++.+.+||.. .+..
T Consensus 2272 dg~l~l~q~~p-----------------k~~~s~qchnk~--~~Df~Fi---~s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2272 DGDLSLWQASP-----------------KPYTSWQCHNKA--LSDFRFI---GSLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred CCceeecccCC-----------------cceeccccCCcc--ccceeee---ehhhhccccCCCCCcccchhcccCcccc
Confidence 99999999874 466666677754 8888883 35666654 57899999954 2222
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEe
Q 021484 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~ 261 (312)
+.. ..|.+.++++++.|..+.|++||.+|.|++||++...+ +.++. +. ...++++++..|.++||++
T Consensus 2330 ~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2330 LVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred eee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEc
Confidence 222 78999999999999999999999999999999987764 22321 22 4568999999999999999
Q ss_pred cccCcc
Q 021484 262 QRRQTL 267 (312)
Q Consensus 262 ~~~~~~ 267 (312)
...+.+
T Consensus 2398 s~~~ll 2403 (2439)
T KOG1064|consen 2398 SEFGLL 2403 (2439)
T ss_pred cccchh
Confidence 877443
No 233
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.38 E-value=4.4e-12 Score=109.09 Aligned_cols=205 Identities=16% Similarity=0.240 Sum_probs=146.1
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeEEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~s 105 (312)
.||...|+.+-|+|+.+..+++++.|..+..||+++-. .++-.+ ..-......++|+-. +..+|+
T Consensus 111 hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--------~p~ys~------~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 111 HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--------RPFYST------SSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred ecCccceeccccCCCCCcceeeccccccceeeeccCCC--------cceeee------ecccccCceeeecccCcchhhh
Confidence 36899999999999999999999999999999999764 222222 222344567889864 467888
Q ss_pred ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe--eE
Q 021484 106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK--LV 183 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~--~~ 183 (312)
+..+.|++||++.+. .++..+++|... |..+.|.......+++++.||+|++||..... ..
T Consensus 177 shg~~i~vwd~r~gs---------------~pl~s~K~~vs~--vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~ 239 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGS---------------TPLCSLKGHVSS--VNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK 239 (1081)
T ss_pred ccCCceEEEeccCCC---------------cceEEeccccee--eehHHHhhhhhhhhcccCCCCceeeecccccccccc
Confidence 888999999998873 567778887755 88888844456678899999999999976432 22
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEe--CCCcEEE---------ccCCCC--CCCCCCCChhhhhhhhccCCC-------
Q 021484 184 RLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKL---------WAPMPT--DFPPLPDNAEKIMKANKQGRE------- 243 (312)
Q Consensus 184 ~~~~~~~~~v~~~~~~p~~~~l~t~~--~d~~i~i---------wd~~~~--~~~~~~~~~~~~~~~~~~~~~------- 243 (312)
... ....+|..-.+.|-|.-.++-- .+..+-+ |+..+. .+.++.+|...++...|....
T Consensus 240 ~~v-tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d 318 (1081)
T KOG0309|consen 240 RTV-TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYD 318 (1081)
T ss_pred eec-cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCC
Confidence 222 2345666667777665422221 1223333 443333 257788999999988887652
Q ss_pred --CceeEEecCCceEEEEEecc
Q 021484 244 --DHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 244 --~~~l~s~~~d~~i~i~~~~~ 263 (312)
.-.|++.+.|..+++|.+..
T Consensus 319 ~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 319 SRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccceeEEEeecCCceEeeeccH
Confidence 34799999999999998754
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.38 E-value=2.1e-10 Score=90.10 Aligned_cols=151 Identities=15% Similarity=0.257 Sum_probs=100.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec-CC
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN-DE 109 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~-d~ 109 (312)
.|.-+.|..+...+|.....++.|.+|++...+.... + .....++.++.|+|+|+ +|.+++ +-
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck--------------I-deg~agls~~~WSPdgrhiL~tseF~l 114 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK--------------I-DEGQAGLSSISWSPDGRHILLTSEFDL 114 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEE--------------e-ccCCCcceeeeECCCcceEeeeeccee
Confidence 4667889888756677778999999999987663221 1 34467889999999996 555565 89
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---------------------
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD--------------------- 168 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~--------------------- 168 (312)
.|.+|.+.+. ....++-.+.. +..++| +++|++.+.++.
T Consensus 115 riTVWSL~t~-----------------~~~~~~~pK~~--~kg~~f-~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f 174 (447)
T KOG4497|consen 115 RITVWSLNTQ-----------------KGYLLPHPKTN--VKGYAF-HPDGQFCAILSRRDCKDYVQISSCKAWILLKEF 174 (447)
T ss_pred EEEEEEeccc-----------------eeEEecccccC--ceeEEE-CCCCceeeeeecccHHHHHHHHhhHHHHHHHhc
Confidence 9999999875 22222222222 566676 677776665543
Q ss_pred ---------------CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021484 169 ---------------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 218 (312)
Q Consensus 169 ---------------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd 218 (312)
+..+.+||.--.-.+..+. -.-.+..++|+|.+++++.|+.|+.+|+-+
T Consensus 175 ~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 175 KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred CCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhc
Confidence 1123344422111111221 224678899999999999999999998854
No 235
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=1.3e-12 Score=108.68 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=118.9
Q ss_pred cccCCCccEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCce-EecccCCceeeEEEEecC-C
Q 021484 83 LIGKNNIHITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQV-YSGHRNSQTVKGVNFFGP-N 159 (312)
Q Consensus 83 ~~~~~~~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~~~s~-~ 159 (312)
-+.+|.+-|.+++|+.+|.+|++|+ |-.+.|||.-.. +++.. -.+|... |.++.|.+. +
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~----------------KllhsI~TgHtaN--IFsvKFvP~tn 106 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY----------------KLLHSISTGHTAN--IFSVKFVPYTN 106 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhc----------------ceeeeeecccccc--eeEEeeeccCC
Confidence 3489999999999999999999986 788999998765 45444 4578866 999999433 3
Q ss_pred CCEEEEeccCceEEEEeccC----------CeeEEEeecCccceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCCCCCCC
Q 021484 160 DEYVMSGSDCGHLFIWKKKG----------GKLVRLMVGDRHVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDFPPLP 228 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~----------~~~~~~~~~~~~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~~~~~ 228 (312)
.+++++|..|..|+++|+.. ......+..|...|..++-.|+++ .+-++++||+|+-+|++......-.
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc
Confidence 56788999999999999874 233455667889999999999994 5999999999999999863321100
Q ss_pred C--C------hhhh--hhhhccCC-CCceeEEecCCceEEEEEe
Q 021484 229 D--N------AEKI--MKANKQGR-EDHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 229 ~--~------~~~~--~~~~~~~~-~~~~l~s~~~d~~i~i~~~ 261 (312)
+ + .... .++...++ ...+|+.|+.|-..+++|.
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 0 0 0111 12222334 5677888888888888874
No 236
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=4.4e-11 Score=100.45 Aligned_cols=190 Identities=13% Similarity=0.126 Sum_probs=138.2
Q ss_pred CcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE------cc-------------CCC-e
Q 021484 43 PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY------SN-------------TSE-L 102 (312)
Q Consensus 43 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~-------------~~~-~ 102 (312)
..++|....||.+++|+....++.......... .+..++.+| +| .+. .
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~------------s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~ 72 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL------------SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSM 72 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhc------------cCcceeEEEEEEeccchHHHHhHHHHhhccCCceE
Confidence 378999999999999999988765432211111 122222222 11 122 4
Q ss_pred EEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe
Q 021484 103 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 181 (312)
Q Consensus 103 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~ 181 (312)
++-| ..|.|.+|++..+ +....+.+......|.++.+ +.+-..|.+++.|+.+..|+...++
T Consensus 73 lvlgt~~g~v~~ys~~~g----------------~it~~~st~~h~~~v~~~~~-~~~~~ciyS~~ad~~v~~~~~~~~~ 135 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGG----------------EITAKLSTDKHYGNVNEILD-AQRLGCIYSVGADLKVVYILEKEKV 135 (541)
T ss_pred EEeecCCccEEEEEecCC----------------eEEEEEecCCCCCcceeeec-ccccCceEecCCceeEEEEecccce
Confidence 5556 5899999999887 67777774444455999988 7888899999999999999999999
Q ss_pred eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC-CCCCCChhhhhhhhccCC----CCceeE-EecCCce
Q 021484 182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF-PPLPDNAEKIMKANKQGR----EDHSRI-TLTPDVI 255 (312)
Q Consensus 182 ~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~l~-s~~~d~~ 255 (312)
.+..++.....+.+++.+|++..+++++ ++|++||+++.++ ..+++|...+-....... .+.+++ +...+..
T Consensus 136 ~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 136 IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence 9999999889999999999999999998 8999999999985 778888877744332211 133333 4445566
Q ss_pred EEEEEecc
Q 021484 256 MHVLRLQR 263 (312)
Q Consensus 256 i~i~~~~~ 263 (312)
+.+|-+..
T Consensus 214 i~~w~v~~ 221 (541)
T KOG4547|consen 214 ITVWVVEK 221 (541)
T ss_pred eeEEEEEc
Confidence 67776544
No 237
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=9.6e-11 Score=101.27 Aligned_cols=153 Identities=10% Similarity=0.063 Sum_probs=94.5
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEcc--CCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec-
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIR--KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN- 107 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~- 107 (312)
.+.+.+|+|++..++++.+.+|...+|.+. ++. ...+ ..+........|+|+|+.|+. +.
T Consensus 241 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---------------~~~l-t~~~~~~~~~~wSpDG~~l~f~s~~ 304 (427)
T PRK02889 241 SNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---------------LRRL-TQSSGIDTEPFFSPDGRSIYFTSDR 304 (427)
T ss_pred CccceEECCCCCEEEEEEccCCCceEEEEECCCCC---------------cEEC-CCCCCCCcCeEEcCCCCEEEEEecC
Confidence 456889999995455567788887777654 332 1111 233344566789999996665 33
Q ss_pred CCcEEEEEc--CCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc---eEEEEeccCCee
Q 021484 108 DELVYLFEK--NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGGKL 182 (312)
Q Consensus 108 d~~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg---~v~iwd~~~~~~ 182 (312)
++...+|.+ .++ ..+.+..... .....+| +|+|++|+..+.++ .|.+||+.+++.
T Consensus 305 ~g~~~Iy~~~~~~g-----------------~~~~lt~~g~--~~~~~~~-SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 305 GGAPQIYRMPASGG-----------------AAQRVTFTGS--YNTSPRI-SPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred CCCcEEEEEECCCC-----------------ceEEEecCCC--CcCceEE-CCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 456566654 333 2222222221 1445778 99999998776554 699999988765
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEccCCCC
Q 021484 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPT 222 (312)
Q Consensus 183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~ 222 (312)
. .+..+ .......|+|+++.|+.++.++ .+.+.++.+.
T Consensus 365 ~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~ 405 (427)
T PRK02889 365 T-ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGR 405 (427)
T ss_pred E-EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCCC
Confidence 4 33322 3346789999999977776443 3555555443
No 238
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=2.9e-11 Score=107.65 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=121.2
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEc
Q 021484 38 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEK 116 (312)
Q Consensus 38 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~ 116 (312)
++++. -++++|+.-+.|.+|+....+ ....+.+|.+.|.++.|+.+|.++++. .|..+++|++
T Consensus 141 ~s~~~-~~i~~gsv~~~iivW~~~~dn---------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i 204 (967)
T KOG0974|consen 141 DSAEE-LYIASGSVFGEIIVWKPHEDN---------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPI 204 (967)
T ss_pred ccCcE-EEEEeccccccEEEEeccccC---------------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeec
Confidence 45555 788999999999999998332 222348999999999999999999996 5999999999
Q ss_pred CCCcCCCCCcCCcccccCCCCCc-eEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCc-cceE
Q 021484 117 NMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVN 194 (312)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~ 194 (312)
.+. +... ..-+|... +..++| .|+ .+++++.|-+.++|+.+ ++.+..+.+|. ..+.
T Consensus 205 ~s~----------------~~~~~~~fgHsaR--vw~~~~-~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw 262 (967)
T KOG0974|consen 205 DSR----------------EVLGCTGFGHSAR--VWACCF-LPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIW 262 (967)
T ss_pred ccc----------------cccCcccccccce--eEEEEe-ccc--eeEEeccceEEEEEecc-cceehhhhhhhhccee
Confidence 987 3333 55578866 999998 666 99999999999999776 55566787776 5789
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484 195 QLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 195 ~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
.++.++.....+|++.|+.+++|++...
T Consensus 263 ~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 263 KIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 9999999999999999999999997653
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=3e-11 Score=101.24 Aligned_cols=167 Identities=16% Similarity=0.219 Sum_probs=123.1
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
..+++++..++-+ .+|++|+.+|.|..||.+....+........+... ........|+++.|+.+|..++.| ++
T Consensus 175 ~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~----pg~~~~~svTal~F~d~gL~~aVGts~ 249 (703)
T KOG2321|consen 175 SGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSH----PGGDAAPSVTALKFRDDGLHVAVGTST 249 (703)
T ss_pred cccceeeeecCcc-ceEEecccCceEEEecchhhhhheeeecccccCCC----ccccccCcceEEEecCCceeEEeeccC
Confidence 5689999999988 69999999999999999987644333222211110 001123459999999999888887 69
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
|.+.|||++.. ++ .....|....+|..+.|...+++--+.......++|||-.+|++...+.
T Consensus 250 G~v~iyDLRa~----------------~p-l~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE- 311 (703)
T KOG2321|consen 250 GSVLIYDLRAS----------------KP-LLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE- 311 (703)
T ss_pred CcEEEEEcccC----------------Cc-eeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc-
Confidence 99999999986 33 3445566666799999943333333444567789999999999988776
Q ss_pred CccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484 189 DRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 189 ~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
....++.+++-|++.+++++..+..+..|=+
T Consensus 312 pt~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 312 PTSDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred ccCCcCceeeecCCceEEEecCCCcceeEEc
Confidence 4456999999999999999988877766543
No 240
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.33 E-value=1.4e-10 Score=91.49 Aligned_cols=207 Identities=16% Similarity=0.148 Sum_probs=147.9
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEcc-CCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEE
Q 021484 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLI 104 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 104 (312)
+-||.+.|++...-|.. .-+.+.+.|.++|+|--+ .++ .-..+......+++++.++++...|+
T Consensus 20 ~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q--------------~wpsI~~~mP~~~~~~~y~~e~~~L~ 84 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQ--------------YWPSIYHYMPSPCSAMEYVSESRRLY 84 (404)
T ss_pred hcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccc--------------cCchhhhhCCCCceEeeeeccceEEE
Confidence 35788899999888877 689999999999999654 444 11111123357789999999988888
Q ss_pred Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc-----
Q 021484 105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK----- 178 (312)
Q Consensus 105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~----- 178 (312)
.+ ..|++.-+.+... +.+....+.+..|... +..+-| +....++++.+.|..+.---.+
T Consensus 85 vg~~ngtvtefs~sed------------fnkm~~~r~~~~h~~~--v~~~if-~~~~e~V~s~~~dk~~~~hc~e~~~~l 149 (404)
T KOG1409|consen 85 VGQDNGTVTEFALSED------------FNKMTFLKDYLAHQAR--VSAIVF-SLTHEWVLSTGKDKQFAWHCTESGNRL 149 (404)
T ss_pred EEEecceEEEEEhhhh------------hhhcchhhhhhhhhcc--eeeEEe-cCCceeEEEeccccceEEEeeccCCcc
Confidence 87 5899988876432 3333455666666655 777776 6666667666666554222111
Q ss_pred ------------------------------------CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484 179 ------------------------------------GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 179 ------------------------------------~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
...++.++.+|.+.+++++|.|....+.+|..|..+.+||+...
T Consensus 150 g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 150 GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence 12235577789999999999999999999999999999998765
Q ss_pred C--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 223 D--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 223 ~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
+ ...+.+|.+.+-. .+...-...+++.+.|+.|.+|+++.
T Consensus 230 ~g~~~el~gh~~kV~~-l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 230 KGTAYELQGHNDKVQA-LSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cceeeeeccchhhhhh-hhhhhhheeeeeccCCCeEEEEeccc
Confidence 5 4555666666633 33334456899999999999999764
No 241
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=5.5e-10 Score=96.96 Aligned_cols=180 Identities=12% Similarity=0.024 Sum_probs=105.8
Q ss_pred ccceEEEEEcCCCCcEEEEE-eCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-
Q 021484 30 SIRLNAIVIDPRNPNYFAVG-GSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 105 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 105 (312)
...+.+..|+|++ +.|+.. ..++ .|++||+.+++... + ..........+|+|+|+.|+.
T Consensus 217 ~~~~~~p~wSPDG-~~La~~s~~~g~~~L~~~dl~tg~~~~-------l---------t~~~g~~~~~~wSPDG~~La~~ 279 (448)
T PRK04792 217 PEPLMSPAWSPDG-RKLAYVSFENRKAEIFVQDIYTQVREK-------V---------TSFPGINGAPRFSPDGKKLALV 279 (448)
T ss_pred CCcccCceECCCC-CEEEEEEecCCCcEEEEEECCCCCeEE-------e---------cCCCCCcCCeeECCCCCEEEEE
Confidence 4567889999999 555544 3333 58888988765210 0 111222346799999996654
Q ss_pred e-cCCc--EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEeccC
Q 021484 106 Y-NDEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKG 179 (312)
Q Consensus 106 ~-~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~~ 179 (312)
. .++. |+++|+.++ ..+.+..+... ....+| +|++++|+..+. ++ .|+++|+.+
T Consensus 280 ~~~~g~~~Iy~~dl~tg-----------------~~~~lt~~~~~--~~~p~w-SpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 280 LSKDGQPEIYVVDIATK-----------------ALTRITRHRAI--DTEPSW-HPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred EeCCCCeEEEEEECCCC-----------------CeEECccCCCC--ccceEE-CCCCCEEEEEECCCCCceEEEEECCC
Confidence 3 3554 788888765 22333333322 567888 999998876543 33 577778877
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEeC-CC--cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEE
Q 021484 180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT 249 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 249 (312)
++... +..........+|+|+|++++..+. ++ .|.++|+.++....+..... . ....+++++..++.
T Consensus 340 g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~-d-~~ps~spdG~~I~~ 409 (448)
T PRK04792 340 GKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRL-D-ESPSVAPNGTMVIY 409 (448)
T ss_pred CCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCC-C-CCceECCCCCEEEE
Confidence 76433 2212223345789999999776654 34 45557777776433332211 1 11135666655543
No 242
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=2e-11 Score=100.27 Aligned_cols=248 Identities=12% Similarity=0.088 Sum_probs=167.3
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--CeEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLI 104 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~ 104 (312)
.+|.+-|..+.|+..| ..+++|+.|..|.+||...++ ....+..+|...|....|-|.. +-++
T Consensus 139 ~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~--------------~~l~f~SGH~~NvfQaKFiP~s~d~ti~ 203 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGS--------------PKLSFESGHCNNVFQAKFIPFSGDRTIV 203 (559)
T ss_pred cCCCCccceeeecccC-ceeeccCccceEEeehhhccC--------------cccccccccccchhhhhccCCCCCcCce
Confidence 4699999999999999 899999999999999999887 3444447888888888898865 4566
Q ss_pred Ee-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccCCee
Q 021484 105 SY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 105 s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
++ .||++++=.+.... ..+..+.+..|.+. |.-++. .|. ...|++++.|+.++-+|++...+
T Consensus 204 ~~s~dgqvr~s~i~~t~-------------~~e~t~rl~~h~g~--vhklav-~p~sp~~f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 204 TSSRDGQVRVSEILETG-------------YVENTKRLAPHEGP--VHKLAV-EPDSPKPFLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred eccccCceeeeeecccc-------------ceecceecccccCc--cceeee-cCCCCCcccccccccceeeeeeccCCc
Confidence 64 69999987664321 01223445556655 777776 454 56689999999999999987765
Q ss_pred EEEe---ecCcc---ceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCCCC-------C-----CCCChhhhhhhhccCCC
Q 021484 183 VRLM---VGDRH---VVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTDFP-------P-----LPDNAEKIMKANKQGRE 243 (312)
Q Consensus 183 ~~~~---~~~~~---~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~~-------~-----~~~~~~~~~~~~~~~~~ 243 (312)
...+ +.+.. ..+.++..|... .+++++.|..+++||.+.-... . +.......++.+.++.+
T Consensus 268 a~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~ 347 (559)
T KOG1334|consen 268 AEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHD 347 (559)
T ss_pred cceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCC
Confidence 4433 23333 467889999887 5999999999999997643211 1 11111222344445544
Q ss_pred CceeEEecCCceEEEEEeccc--------------Ccccee------------EeecCCCccCCCCCCCeEEEeecCCCC
Q 021484 244 DHSRITLTPDVIMHVLRLQRR--------------QTLAYR------------ERRYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 244 ~~~l~s~~~d~~i~i~~~~~~--------------~~~~~~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
+.-|++.-.|-.+++++-... .+.+|. =+.|...++.++.|.|.||+|+=..+.
T Consensus 348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH
Confidence 444555555556666642111 011121 235667788889999999999977765
Q ss_pred CCCCCCCc
Q 021484 298 ASSEGGGN 305 (312)
Q Consensus 298 ~~~~~~~~ 305 (312)
---.+.|+
T Consensus 428 ii~~MegD 435 (559)
T KOG1334|consen 428 IIRFMEGD 435 (559)
T ss_pred HHHHhhcc
Confidence 44444443
No 243
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=5.8e-10 Score=96.10 Aligned_cols=201 Identities=10% Similarity=0.005 Sum_probs=113.6
Q ss_pred cceEEEEEcCCCCc--EEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 31 IRLNAIVIDPRNPN--YFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 31 ~~v~~~~~~p~~~~--~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
..+..-+|+|+|.. ++++...+| .|.+.++.+++.. .+ ..........+|+|||+.|+..
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-------~l---------t~~~g~~~~p~wSPDG~~Laf~ 248 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-------KI---------LALQGNQLMPTFSPRKKLLAFI 248 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-------Ee---------ecCCCCccceEECCCCCEEEEE
Confidence 34567799999844 223444444 5777788766511 11 1123334567999999877654
Q ss_pred c--CC--cE--EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEE--ec
Q 021484 107 N--DE--LV--YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIW--KK 177 (312)
Q Consensus 107 ~--d~--~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iw--d~ 177 (312)
. +| .+ .+|++..+.. ....+........ ....+| +|+|+.|+..+ .+|...+| ++
T Consensus 249 s~~~g~~di~~~~~~~~~g~~-------------g~~~~lt~~~~~~--~~~p~w-SPDG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 249 SDRYGNPDLFIQSFSLETGAI-------------GKPRRLLNEAFGT--QGNPSF-SPDGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred ECCCCCcceeEEEeecccCCC-------------CcceEeecCCCCC--cCCeEE-CCCCCEEEEEECCCCCceEEEEEC
Confidence 2 33 33 3466654200 0222222222222 456788 99999877654 45644444 44
Q ss_pred cC-CeeEEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEE-ecC
Q 021484 178 KG-GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT-LTP 252 (312)
Q Consensus 178 ~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~~ 252 (312)
.. +.....+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++...+....... ....|+++++.++. ...
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~-~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENK-ESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred cccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCc-cceEECCCCCEEEEEECC
Confidence 32 23334444444566789999999998776543 46999999988765554322122 23346777766553 332
Q ss_pred C--ceEEEEEeccc
Q 021484 253 D--VIMHVLRLQRR 264 (312)
Q Consensus 253 d--~~i~i~~~~~~ 264 (312)
+ ..+.++++...
T Consensus 392 ~g~~~L~~vdl~~g 405 (428)
T PRK01029 392 SNESELYLISLITK 405 (428)
T ss_pred CCCceEEEEECCCC
Confidence 2 45666665543
No 244
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.30 E-value=2.4e-10 Score=88.34 Aligned_cols=167 Identities=10% Similarity=0.069 Sum_probs=112.8
Q ss_pred ccceEEEEEcC---CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 30 SIRLNAIVIDP---RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 30 ~~~v~~~~~~p---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
...+..|.|.- ++.-.++-+..+|.|.+|......-.. .++.+....+ ......++.|++.+..++++
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~------~L~~ls~~ki---~~~~~lslD~~~~~~~i~vs 139 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV------HLRGLSSKKI---SVVEALSLDISTSGTKIFVS 139 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeee------eecccchhhh---hheeeeEEEeeccCceEEEE
Confidence 34567777753 332356677788999998876433100 0000011111 11135678899999877776
Q ss_pred -cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc-CCeeEE
Q 021484 107 -NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-GGKLVR 184 (312)
Q Consensus 107 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~-~~~~~~ 184 (312)
++|.+.+-+.... ..+..+..+.|.-+ .....|...+.+.+++|++|+.+..||++ .++.+.
T Consensus 140 ~s~G~~~~v~~t~~--------------~le~vq~wk~He~E--~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 140 DSRGSISGVYETEM--------------VLEKVQTWKVHEFE--AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred cCCCcEEEEeccee--------------eeeeccccccccee--eeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 6888885554432 11344577788866 77788855567899999999999999999 444444
Q ss_pred E-eecCccceEEEEEcCC-CCeEEEEeCCCcEEEccCCC
Q 021484 185 L-MVGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 185 ~-~~~~~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~~~ 221 (312)
. .+.|...|.++.-+|. +.+++||+.|..|++||.+.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 3 4568889999988765 56799999999999999984
No 245
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.30 E-value=5.6e-11 Score=93.72 Aligned_cols=227 Identities=15% Similarity=0.155 Sum_probs=146.1
Q ss_pred ccceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCCeecC---------------------CCCCCCCcccccccccccCC
Q 021484 30 SIRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYS---------------------PISSDTPVDTFCPRHLIGKN 87 (312)
Q Consensus 30 ~~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 87 (312)
...|..+.|.+++. ..++..+.|.+|++|.+....... ..+.+..+...+.+.....|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 45788999988542 467778899999999987543221 00111122333344445689
Q ss_pred CccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec
Q 021484 88 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 167 (312)
Q Consensus 88 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~ 167 (312)
...|.+|.++.|++.+.++.|=.|.+|+++-. ++++.+-++++- .+..-. ..|++..|++...+.++-.+
T Consensus 164 tyhiNSIS~NsD~Et~lSADdLRINLWnlei~----d~sFnIVDIKP~----nmEeLt--eVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 164 TYHINSISVNSDKETFLSADDLRINLWNLEII----DQSFNIVDIKPA----NMEELT--EVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred eeEeeeeeecCccceEeeccceeeeecccccc----CCceeEEEcccc----CHHHHH--HHHhhhccCHhHccEEEEec
Confidence 99999999999999999999999999998643 111111111110 011111 23788888444567788889
Q ss_pred cCceEEEEeccCCeeEE----Eee------------cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCC
Q 021484 168 DCGHLFIWKKKGGKLVR----LMV------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPD 229 (312)
Q Consensus 168 ~dg~v~iwd~~~~~~~~----~~~------------~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~ 229 (312)
..|+|++.|++...+.- .+. .--..|.++.|+++|+++++-.. -+|++||+.... +.+++-
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v 312 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV 312 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee
Confidence 99999999998543211 111 11246889999999999988753 689999985432 333332
Q ss_pred Ch--h----------hhhhh--hccCCCCceeEEecCCceEEEEEecccCcc
Q 021484 230 NA--E----------KIMKA--NKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 230 ~~--~----------~~~~~--~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
|. . .++.. ..|+.++...+||+....++++++.++.+.
T Consensus 313 h~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~ 364 (433)
T KOG1354|consen 313 HEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE 364 (433)
T ss_pred hHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence 21 1 11110 113446679999999999999997666444
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=6.9e-10 Score=93.43 Aligned_cols=144 Identities=10% Similarity=0.149 Sum_probs=117.7
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP 122 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 122 (312)
..++-|...|.|.+|+...+++- ....-..|.+.|.++.++.+-..|.++ .|..+..|+....
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it-------------~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~--- 134 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEIT-------------AKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK--- 134 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEE-------------EEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---
Confidence 46888999999999999988731 112226789999999998887778775 6999999999877
Q ss_pred CCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCC-
Q 021484 123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPH- 201 (312)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~- 201 (312)
...+.+...... +.+++. +|++..+++++ +.|++||+.+++.+..|.+|.++|++++|--.
T Consensus 135 -------------~~~~~~~~~~~~--~~sl~i-s~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~ 196 (541)
T KOG4547|consen 135 -------------VIIRIWKEQKPL--VSSLCI-SPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLI 196 (541)
T ss_pred -------------eeeeeeccCCCc--cceEEE-cCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEec
Confidence 666777766644 899998 99999999887 78999999999999999999999999999776
Q ss_pred ----CCeEEE-EeCCCcEEEccCCC
Q 021484 202 ----IPMFAT-CGIEKTVKLWAPMP 221 (312)
Q Consensus 202 ----~~~l~t-~~~d~~i~iwd~~~ 221 (312)
|.++++ ...+.-|.+|-...
T Consensus 197 ~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 197 DGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cccccceeeeccccccceeEEEEEc
Confidence 666544 45677788887654
No 247
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=4.6e-10 Score=96.76 Aligned_cols=220 Identities=10% Similarity=0.098 Sum_probs=150.1
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
...+.|++|+... .++|.|+.||.+++..+.+.........-.....+...+.+.+|...|..+.|+.+.+.|.++ .+
T Consensus 14 nvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccC-CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4568899999977 799999999999999988654322222222333344455568999999999999999999998 59
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE-EEee
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV-RLMV 187 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~ 187 (312)
|.|.+|-+-++ .-...+...++...|.+++| +.+|..+.....||.|.+=.+...+.- +.++
T Consensus 93 GlIiVWmlykg----------------sW~EEMiNnRnKSvV~SmsW-n~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk 155 (1189)
T KOG2041|consen 93 GLIIVWMLYKG----------------SWCEEMINNRNKSVVVSMSW-NLDGTKICIVYEDGAVIVGSVDGNRIWGKELK 155 (1189)
T ss_pred ceEEEEeeecc----------------cHHHHHhhCcCccEEEEEEE-cCCCcEEEEEEccCCEEEEeeccceecchhcc
Confidence 99999998766 33333444444456999999 999999999999999988877643321 1222
Q ss_pred cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC--------CCCC----CChhhhhhhhc-------cCCCCceeE
Q 021484 188 GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF--------PPLP----DNAEKIMKANK-------QGREDHSRI 248 (312)
Q Consensus 188 ~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~--------~~~~----~~~~~~~~~~~-------~~~~~~~l~ 248 (312)
......+.|+++.+.++.+-..|.+.+||.+..-. .... .....+....| ..|+...++
T Consensus 156 --g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~la 233 (1189)
T KOG2041|consen 156 --GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLA 233 (1189)
T ss_pred --hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEE
Confidence 22345788999999988888889999999765311 0000 01111111111 234556777
Q ss_pred EecCCceEEEEEecccCccce
Q 021484 249 TLTPDVIMHVLRLQRRQTLAY 269 (312)
Q Consensus 249 s~~~d~~i~i~~~~~~~~~~~ 269 (312)
.+-.+|.+++.+-.+...++.
T Consensus 234 vcy~nGr~QiMR~eND~~Pvv 254 (1189)
T KOG2041|consen 234 VCYANGRMQIMRSENDPEPVV 254 (1189)
T ss_pred EEEcCceehhhhhcCCCCCeE
Confidence 777788888776544444443
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.22 E-value=1.5e-09 Score=94.08 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=99.0
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 106 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 106 (312)
...+.+++|+|++..++++.+.++ .|++|++.+++.. .+ ..+........|+|+|+.|+. +
T Consensus 233 ~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~---------------~l-~~~~~~~~~~~~s~dg~~l~~~s 296 (417)
T TIGR02800 233 PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT---------------RL-TNGPGIDTEPSWSPDGKSIAFTS 296 (417)
T ss_pred CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE---------------EC-CCCCCCCCCEEECCCCCEEEEEE
Confidence 345667899999954555555554 5888888876421 11 222233446689999986655 3
Q ss_pred c-CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc---eEEEEeccCC
Q 021484 107 N-DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG---HLFIWKKKGG 180 (312)
Q Consensus 107 ~-d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg---~v~iwd~~~~ 180 (312)
. .+ .|+++++.++ + ...+..+... .....| +|++++++.++.++ .|.+||+.++
T Consensus 297 ~~~g~~~iy~~d~~~~----------------~-~~~l~~~~~~--~~~~~~-spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 297 DRGGSPQIYMMDADGG----------------E-VRRLTFRGGY--NASPSW-SPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCCCCceEEEEECCCC----------------C-EEEeecCCCC--ccCeEE-CCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 2 33 5888887764 2 2333333322 667788 99999998887765 7999998876
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeCCC---cEEEccCCCCC
Q 021484 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---TVKLWAPMPTD 223 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~---~i~iwd~~~~~ 223 (312)
.. ..+... .......|+|+++.|+..+.++ .+.+.+.....
T Consensus 357 ~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~ 400 (417)
T TIGR02800 357 GE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF 400 (417)
T ss_pred Ce-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence 54 333322 2334568999999987776543 45566655443
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.19 E-value=6e-09 Score=87.76 Aligned_cols=156 Identities=12% Similarity=0.134 Sum_probs=102.5
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--cCCcE
Q 021484 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELV 111 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i 111 (312)
..+.|+|++ +++++.+.||.|.++|+.+.+++. .+.. ......++++++|++++++ ..+.+
T Consensus 40 ~~~~~s~Dg-r~~yv~~rdg~vsviD~~~~~~v~--------------~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v 102 (369)
T PF02239_consen 40 AGLKFSPDG-RYLYVANRDGTVSVIDLATGKVVA--------------TIKV--GGNPRGIAVSPDGKYVYVANYEPGTV 102 (369)
T ss_dssp EEEE-TT-S-SEEEEEETTSEEEEEETTSSSEEE--------------EEE---SSEEEEEEE--TTTEEEEEEEETTEE
T ss_pred eEEEecCCC-CEEEEEcCCCeEEEEECCcccEEE--------------EEec--CCCcceEEEcCCCCEEEEEecCCCce
Confidence 457899999 788888899999999999988432 2212 3346789999999988775 49999
Q ss_pred EEEEcCCCcCCCCCcCCcccccCCCCCceEecccC-----CceeeEEEEecCCCC-EEEEeccCceEEEEeccCCeeEE-
Q 021484 112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-----SQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVR- 184 (312)
Q Consensus 112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~- 184 (312)
.++|.++. +.++.+..... ...+..+.. ++... ++++.-+.+.|.+.|....+.+.
T Consensus 103 ~v~D~~tl----------------e~v~~I~~~~~~~~~~~~Rv~aIv~-s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 103 SVIDAETL----------------EPVKTIPTGGMPVDGPESRVAAIVA-SPGRPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp EEEETTT------------------EEEEEE--EE-TTTS---EEEEEE--SSSSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred eEeccccc----------------cceeecccccccccccCCCceeEEe-cCCCCEEEEEEccCCeEEEEEeccccccce
Confidence 99999886 66666653321 112667766 66666 55566667899999977654432
Q ss_pred EeecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCCCC
Q 021484 185 LMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMPTD 223 (312)
Q Consensus 185 ~~~~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~~~ 223 (312)
....-.....+..|+|++++++.+ .....|-++|..+++
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred eeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 222233466789999999996554 467788999988764
No 250
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=2.4e-09 Score=92.32 Aligned_cols=165 Identities=8% Similarity=0.072 Sum_probs=96.8
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC----eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 106 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 106 (312)
.....+|+|+|..++++...+| .+..|++..+.. . ....+...+.......+|+|+|+.|+. +
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~------g------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s 299 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI------G------KPRRLLNEAFGTQGNPSFSPDGTRLVFVS 299 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC------C------cceEeecCCCCCcCCeEECCCCCEEEEEE
Confidence 3456899999954444443333 344466654310 0 011111222233456799999996665 3
Q ss_pred -cCCcEEEE--EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC---ceEEEEeccCC
Q 021484 107 -NDELVYLF--EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKGG 180 (312)
Q Consensus 107 -~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---g~v~iwd~~~~ 180 (312)
.++...+| ++.... ...+.+...... +....| +|+|++|+..+.+ ..|++||+.++
T Consensus 300 ~~~g~~~ly~~~~~~~g---------------~~~~~lt~~~~~--~~~p~w-SPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 300 NKDGRPRIYIMQIDPEG---------------QSPRLLTKKYRN--SSCPAW-SPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred CCCCCceEEEEECcccc---------------cceEEeccCCCC--ccceeE-CCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 35654444 443210 122333333322 677888 9999988866543 47999999888
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEccCCCCCCCCC
Q 021484 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPL 227 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~~~~~ 227 (312)
+.. .+......+....|+|+|+.|+.... ...|.++++.+++...+
T Consensus 362 ~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 362 RDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred CeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 754 33333345678999999998765432 35688889887765433
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=4.6e-09 Score=91.27 Aligned_cols=158 Identities=13% Similarity=0.069 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCcEEEEEeCCCe--EEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec-C
Q 021484 33 LNAIVIDPRNPNYFAVGGSDEY--ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-D 108 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d 108 (312)
....+|+|++..++++.+.++. |+++|+.+++.. .+ ..+.......+|+|+|+.|+. +. +
T Consensus 264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~---------------~l-t~~~~~~~~p~wSpDG~~I~f~s~~~ 327 (448)
T PRK04792 264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT---------------RI-TRHRAIDTEPSWHPDGKSLIFTSERG 327 (448)
T ss_pred cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE---------------EC-ccCCCCccceEECCCCCEEEEEECCC
Confidence 3468999999545556666775 777787766521 11 223334567899999986655 32 3
Q ss_pred C--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEeccCCeeE
Q 021484 109 E--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKGGKLV 183 (312)
Q Consensus 109 ~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~~~~~~ 183 (312)
+ .|+++|+.++ +. ..+..... .....+| +|+|++|+..+. ++ .|.++|+.+++..
T Consensus 328 g~~~Iy~~dl~~g----------------~~-~~Lt~~g~--~~~~~~~-SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 328 GKPQIYRVNLASG----------------KV-SRLTFEGE--QNLGGSI-TPDGRSMIMVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred CCceEEEEECCCC----------------CE-EEEecCCC--CCcCeeE-CCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence 3 5777777665 22 22221221 1345678 999999877654 33 4666788877643
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEeC-CC--cEEEccCCCCCCCCCC
Q 021484 184 RLMVGDRHVVNQLEPHPHIPMFATCGI-EK--TVKLWAPMPTDFPPLP 228 (312)
Q Consensus 184 ~~~~~~~~~v~~~~~~p~~~~l~t~~~-d~--~i~iwd~~~~~~~~~~ 228 (312)
.+... .......|+|+|+.++..+. ++ .+.+++..+.....+.
T Consensus 388 -~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 388 -VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred -EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 33322 12234579999998766553 33 3677777655444443
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=5.3e-09 Score=87.76 Aligned_cols=151 Identities=11% Similarity=0.136 Sum_probs=106.9
Q ss_pred EEEEEcCCCCcEEEEEeC--C---------CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe
Q 021484 34 NAIVIDPRNPNYFAVGGS--D---------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 102 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~--d---------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 102 (312)
-.+.|++.+..+|+.++. | .++++.++.... +... ....++|.++.|+|+++-
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s--------------~~V~--L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES--------------VSVP--LLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce--------------EEEe--cCCCCCceEEEECCCCCE
Confidence 358888877555554432 2 357777776332 1121 223689999999999974
Q ss_pred EEE--e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---CceEEEEe
Q 021484 103 LIS--Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIWK 176 (312)
Q Consensus 103 l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---dg~v~iwd 176 (312)
++. | .-..+.|||++.. ++..+. .++ -.++-| +|.|++|+.++. -|.|-|||
T Consensus 285 F~VvyGfMPAkvtifnlr~~-----------------~v~df~--egp--RN~~~f-np~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLRGK-----------------PVFDFP--EGP--RNTAFF-NPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred EEEEEecccceEEEEcCCCC-----------------EeEeCC--CCC--ccceEE-CCCCCEEEEeecCCCCCceEEEe
Confidence 444 3 4889999999753 443332 222 456666 999999988765 67899999
Q ss_pred ccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC------CCcEEEccCCCCCC
Q 021484 177 KKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI------EKTVKLWAPMPTDF 224 (312)
Q Consensus 177 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~------d~~i~iwd~~~~~~ 224 (312)
..+.+++..+..-. -+-+.|+|+|.+|+|+.. |..++||+..+..+
T Consensus 343 v~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 343 VPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred ccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 99988888877543 355889999999988873 68899999887654
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=6.9e-09 Score=90.23 Aligned_cols=155 Identities=12% Similarity=0.041 Sum_probs=94.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec-
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN- 107 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~- 107 (312)
.+...+|+|++..++++...+| .|++||+.+++.. .+ ..+........|+|+|+.++. +.
T Consensus 244 ~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~---------------~l-t~~~~~~~~~~~spDg~~i~f~s~~ 307 (430)
T PRK00178 244 LNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS---------------RV-TNHPAIDTEPFWGKDGRTLYFTSDR 307 (430)
T ss_pred CcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE---------------Ec-ccCCCCcCCeEECCCCCEEEEEECC
Confidence 3457899999944444555555 5888898876521 11 223334556789999986554 32
Q ss_pred CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC-c--eEEEEeccCCee
Q 021484 108 DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC-G--HLFIWKKKGGKL 182 (312)
Q Consensus 108 d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d-g--~v~iwd~~~~~~ 182 (312)
++ .|+++++.++ +. ..+..... ......| +|++++|+..+.+ + .|.++|+.+++.
T Consensus 308 ~g~~~iy~~d~~~g----------------~~-~~lt~~~~--~~~~~~~-Spdg~~i~~~~~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 308 GGKPQIYKVNVNGG----------------RA-ERVTFVGN--YNARPRL-SADGKTLVMVHRQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCCceEEEEECCCC----------------CE-EEeecCCC--CccceEE-CCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence 33 5777787665 22 22221111 1345677 9999998776543 3 588899988764
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCC---CcEEEccCCCCCC
Q 021484 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIE---KTVKLWAPMPTDF 224 (312)
Q Consensus 183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d---~~i~iwd~~~~~~ 224 (312)
. .+. +........|+|+|+.++..+.+ ..|.++++.+...
T Consensus 368 ~-~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 368 R-ILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred E-Ecc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 3 332 22223356899999997766533 3466777765443
No 254
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=2.8e-10 Score=95.46 Aligned_cols=205 Identities=10% Similarity=0.102 Sum_probs=140.7
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
+-||...|..++--.+. +-+++++.|.+|++|.++... ++.-..-|..++ ..|..+|.++.|-.+.+++++
T Consensus 731 f~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~Eg-------D~~~tsaCQfTY-~aHkk~i~~igfL~~lr~i~S 801 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEG-------DEIGTSACQFTY-QAHKKPIHDIGFLADLRSIAS 801 (1034)
T ss_pred ccCcHHHhHHHHhcccc-cceeeccCCceEEEEEecccc-------CccccceeeeEh-hhccCcccceeeeeccceeee
Confidence 35799999988766655 789999999999999997432 111112233344 789999999999888776665
Q ss_pred ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe---cccCCceeeEEEEecCCCCEEEEe-ccCceEEEEeccCCe
Q 021484 106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSG-SDCGHLFIWKKKGGK 181 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~s~~~~~l~~~-~~dg~v~iwd~~~~~ 181 (312)
+ |+.|.+||.--+ .++..+. .+.....|.++- +-+...+.+| +...+|+++|.+.++
T Consensus 802 c-D~giHlWDPFig----------------r~Laq~~dapk~~a~~~ikcl~--nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 802 C-DGGIHLWDPFIG----------------RLLAQMEDAPKEGAGGNIKCLE--NVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred c-cCcceeeccccc----------------chhHhhhcCcccCCCceeEecc--cCcchheeeeccchhhheeeeccccc
Confidence 4 788999997655 3333222 122222355543 3345555554 789999999999988
Q ss_pred eEEEeec-----CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCce
Q 021484 182 LVRLMVG-----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVI 255 (312)
Q Consensus 182 ~~~~~~~-----~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 255 (312)
....++. ..+.+.+++..|.|+.++++-..|.|.+.|.+++. +..........+..+ .+.+..++....|..
T Consensus 863 ~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla--apsdq~L~~saldHs 940 (1034)
T KOG4190|consen 863 WTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA--APSDQALAQSALDHS 940 (1034)
T ss_pred ceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc--CchhHHHHhhcccce
Confidence 7777653 34568899999999999999999999999999998 454554444444443 233445555556666
Q ss_pred EEE-EE
Q 021484 256 MHV-LR 260 (312)
Q Consensus 256 i~i-~~ 260 (312)
+.+ |-
T Consensus 941 laVnWh 946 (1034)
T KOG4190|consen 941 LAVNWH 946 (1034)
T ss_pred eEeeeh
Confidence 665 53
No 255
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.12 E-value=2.1e-08 Score=91.54 Aligned_cols=197 Identities=13% Similarity=0.127 Sum_probs=118.3
Q ss_pred CeeecccCccce-eeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecC-------CCC--
Q 021484 1 MWQFDLRSDSAT-RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS-------PIS-- 70 (312)
Q Consensus 1 v~~wd~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~-------~~~-- 70 (312)
||+||+++-... ...++. ..|+.-..++.++...+.+ ..+|.++.||.|++.++....... ..+
T Consensus 1073 VKvW~~~k~~~~~~s~rS~-----ltys~~~sr~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~ 1146 (1431)
T KOG1240|consen 1073 VKVWNLRKLEGEGGSARSE-----LTYSPEGSRVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK 1146 (1431)
T ss_pred EEEeeehhhhcCcceeeee-----EEEeccCCceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccceeeeeeccccc
Confidence 689999865433 222221 1121135689999999988 899999999999999987521110 000
Q ss_pred CCCCccccc-------c----c-------c-------------cccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCC
Q 021484 71 SDTPVDTFC-------P----R-------H-------------LIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNM 118 (312)
Q Consensus 71 ~~~~~~~~~-------~----~-------~-------------~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 118 (312)
.+..+-.+. . . . ......+.|++++.+|.+..++.| +.|.+.+||++=
T Consensus 1147 ~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred CCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 011110000 0 0 0 001124679999999999988887 599999999975
Q ss_pred CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC---CCEEEEec--cCceEEEEeccCCeeEEEeecC-cc-
Q 021484 119 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---DEYVMSGS--DCGHLFIWKKKGGKLVRLMVGD-RH- 191 (312)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~---~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~-~~- 191 (312)
+ .++.... |....++..+.. .|. ....++++ ..+.|-+|++.+|.+-..+... ..
T Consensus 1227 ~----------------~~i~sw~-~P~~~~i~~v~~-~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p 1288 (1431)
T KOG1240|consen 1227 R----------------VPILSWE-HPARAPIRHVWL-CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAP 1288 (1431)
T ss_pred C----------------ceeeccc-CcccCCcceEEe-eccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCc
Confidence 5 3333332 222233666655 332 24554444 5788999999988766555432 10
Q ss_pred -----------------ceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484 192 -----------------VVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 192 -----------------~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
......+..-+..+++|+.|..||.||...
T Consensus 1289 ~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~ 1335 (1431)
T KOG1240|consen 1289 ILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTR 1335 (1431)
T ss_pred chhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCC
Confidence 111122333345788999999999999653
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=1.9e-07 Score=74.75 Aligned_cols=216 Identities=14% Similarity=0.153 Sum_probs=129.9
Q ss_pred CccceEEEEEcCCCCcEEEEEeC---CCeEEEEEccC--CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGS---DEYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 103 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 103 (312)
+...++-++|+|+. +.|.++.. +|.|.-|.+.. +++. +....... ..+.+.++++++|+++
T Consensus 38 ~~~nptyl~~~~~~-~~LY~v~~~~~~ggvaay~iD~~~G~Lt-----------~ln~~~~~--g~~p~yvsvd~~g~~v 103 (346)
T COG2706 38 ELGNPTYLAVNPDQ-RHLYVVNEPGEEGGVAAYRIDPDDGRLT-----------FLNRQTLP--GSPPCYVSVDEDGRFV 103 (346)
T ss_pred ccCCCceEEECCCC-CEEEEEEecCCcCcEEEEEEcCCCCeEE-----------EeeccccC--CCCCeEEEECCCCCEE
Confidence 35567889999988 67777643 57888888774 4421 11111112 2333789999999988
Q ss_pred EEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC--------ceeeEEEEecCCCCEEEEecc-CceE
Q 021484 104 ISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS--------QTVKGVNFFGPNDEYVMSGSD-CGHL 172 (312)
Q Consensus 104 ~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~v~~v~~~s~~~~~l~~~~~-dg~v 172 (312)
+++ ..|.|.++-++..... . ...+... |... ..+....+ .|++++|++... --+|
T Consensus 104 f~AnY~~g~v~v~p~~~dG~l-~-----------~~v~~~~-h~g~~p~~rQ~~~h~H~a~~-tP~~~~l~v~DLG~Dri 169 (346)
T COG2706 104 FVANYHSGSVSVYPLQADGSL-Q-----------PVVQVVK-HTGSGPHERQESPHVHSANF-TPDGRYLVVPDLGTDRI 169 (346)
T ss_pred EEEEccCceEEEEEcccCCcc-c-----------cceeeee-cCCCCCCccccCCccceeee-CCCCCEEEEeecCCceE
Confidence 876 4899999999663100 0 0111111 1110 11566777 999999988764 3478
Q ss_pred EEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCC--CCCC------CCCCC--hhhhhhhh
Q 021484 173 FIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMP--TDFP------PLPDN--AEKIMKAN 238 (312)
Q Consensus 173 ~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~--~~~~------~~~~~--~~~~~~~~ 238 (312)
.+|++..|+....-. ........++|||++++.... -.+++|-+|.... +++. +++.. ...-....
T Consensus 170 ~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 170 FLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred EEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEE
Confidence 899998776532211 223456889999999995544 4799999998776 3322 22211 11111223
Q ss_pred ccCCCCceeEEecCC-ceEEEEEeccc-CccceeEe
Q 021484 239 KQGREDHSRITLTPD-VIMHVLRLQRR-QTLAYRER 272 (312)
Q Consensus 239 ~~~~~~~~l~s~~~d-~~i~i~~~~~~-~~~~~~~~ 272 (312)
..++++++|.+.... ..|-++.+... ..+...+.
T Consensus 250 his~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 250 HISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred EECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE
Confidence 355678888765543 56677776654 23444333
No 257
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.11 E-value=7.8e-10 Score=85.57 Aligned_cols=164 Identities=13% Similarity=0.132 Sum_probs=113.0
Q ss_pred CCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEcc-CCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-CCeE
Q 021484 26 QPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-SELL 103 (312)
Q Consensus 26 ~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l 103 (312)
|.+|..++...+|+...++++.+|+.|+.+..||++ .++ +..+-...|...|.+|.-+|. +.++
T Consensus 161 wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~--------------~i~~n~kvH~~GV~SI~ss~~~~~~I 226 (339)
T KOG0280|consen 161 WKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT--------------FIWHNSKVHTSGVVSIYSSPPKPTYI 226 (339)
T ss_pred ccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc--------------eeeecceeeecceEEEecCCCCCceE
Confidence 456899999999999888999999999999999999 222 122212567888999988875 4589
Q ss_pred EEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-CEEEEeccCceEEEEeccCCe
Q 021484 104 ISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-EYVMSGSDCGHLFIWKKKGGK 181 (312)
Q Consensus 104 ~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-~~l~~~~~dg~v~iwd~~~~~ 181 (312)
++|+ |..|++||.++.. +++. ++... +-|..+.+ +|.- ..++.++...-.+|-+...+.
T Consensus 227 ~TGsYDe~i~~~DtRnm~---------------kPl~--~~~v~-GGVWRi~~-~p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMG---------------KPLF--KAKVG-GGVWRIKH-HPEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred EEeccccceeeeehhccc---------------Cccc--cCccc-cceEEEEe-cchhhhHHHHHHHhcCceEEEecccc
Confidence 9986 9999999998642 2322 21211 23999998 5643 344555555566777765432
Q ss_pred -----eEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEE-EccCCCC
Q 021484 182 -----LVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVK-LWAPMPT 222 (312)
Q Consensus 182 -----~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~-iwd~~~~ 222 (312)
.....+.|.+-++.-.|......+||++ .|+.++ +|-.-++
T Consensus 288 ~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 288 LEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred cchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 2334456777777778855556788887 677755 7754443
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.11 E-value=1.8e-08 Score=79.82 Aligned_cols=177 Identities=14% Similarity=0.221 Sum_probs=125.1
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
-+.+++++.+++.. +.|+.|-.+|++.-+.+...-. ..........|...+..+-|+-..+.+++. .
T Consensus 67 mP~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfn-----------km~~~r~~~~h~~~v~~~if~~~~e~V~s~~~ 134 (404)
T KOG1409|consen 67 MPSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFN-----------KMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK 134 (404)
T ss_pred CCCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhh-----------hcchhhhhhhhhcceeeEEecCCceeEEEecc
Confidence 36789999999987 8999999999999888763310 001122225788888888888777766664 4
Q ss_pred CCcEEEEEcCCCcC-----------CCCC------------cCCc--ccccCCCCCceEecccCCceeeEEEEecCCCCE
Q 021484 108 DELVYLFEKNMGLG-----------PSPL------------SLSP--EDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY 162 (312)
Q Consensus 108 d~~i~iwd~~~~~~-----------~~~~------------~~~~--~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~ 162 (312)
|..+.---.+.+.+ +... .+.. -......++.++.+|... +.+++| .+....
T Consensus 135 dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~--~~~l~W-d~~~~~ 211 (404)
T KOG1409|consen 135 DKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE--VTCLKW-DPGQRL 211 (404)
T ss_pred ccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccc--eEEEEE-cCCCcE
Confidence 55544333332220 0000 0000 002333556777888876 999999 999999
Q ss_pred EEEeccCceEEEEeccCCee-EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484 163 VMSGSDCGHLFIWKKKGGKL-VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 163 l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
|++|..|..+.+||+--.+- ...+.+|...|..+...+.-+.+.+++.||.|.+|+..
T Consensus 212 LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 212 LFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 99999999999999864432 34667899999999888888889999999999999975
No 259
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.10 E-value=1.8e-09 Score=86.94 Aligned_cols=159 Identities=14% Similarity=0.262 Sum_probs=107.7
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEec---
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISYN--- 107 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~~--- 107 (312)
.+..+..+|.+ +++|.+..+....++++..... ....+..++. ....+++.|-.+.. .+++-.
T Consensus 64 a~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~-----~~kl~~~~~v-------~~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDSG-RLVAVATSSKQRAVFDYRENPK-----GAKLLDVSCV-------PKRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred cccccccCCCc-eEEEEEeCCCceEEEEEecCCC-----cceeeeEeec-------ccCcceeeeeeccceEEEEeecCC
Confidence 34456667777 8999998888887888765431 0111111121 12233444444443 333322
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe-
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM- 186 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~- 186 (312)
...+.+|....+ ....+-||... ++.|++ +||+++++++..|..|++-.+.....+..+
T Consensus 131 ~~~~di~s~~~~-----------------~~~~~lGhvSm--l~dVav-S~D~~~IitaDRDEkIRvs~ypa~f~Iesfc 190 (390)
T KOG3914|consen 131 VYSFDILSADSG-----------------RCEPILGHVSM--LLDVAV-SPDDQFIITADRDEKIRVSRYPATFVIESFC 190 (390)
T ss_pred ceeeeeeccccc-----------------Ccchhhhhhhh--hheeee-cCCCCEEEEecCCceEEEEecCcccchhhhc
Confidence 344555554433 34456688865 999999 999999999999999999887765555555
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
-+|+.-|..++.-++. .|+++|.|++|++||+.+++.
T Consensus 191 lGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 191 LGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred cccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCc
Confidence 4799999999987764 489999999999999998763
No 260
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.07 E-value=4.5e-08 Score=80.96 Aligned_cols=173 Identities=13% Similarity=0.082 Sum_probs=124.5
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC-cEEEEE
Q 021484 38 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE-LVYLFE 115 (312)
Q Consensus 38 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~-~i~iwd 115 (312)
|++-.+.+++..|. |...+.+...+-. +..+|...|.-..+..+++-++.+ .|| .+-|||
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-----------------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd 388 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-----------------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYD 388 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCee-----------------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEe
Confidence 44433378888775 7777777664431 114566778888888888755555 576 899999
Q ss_pred cCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEE
Q 021484 116 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQ 195 (312)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~ 195 (312)
..++ .++.+...-+. |.++.. +++|++++++.....|.+.|+.++.....=+...+-|+.
T Consensus 389 ~~~~-----------------e~kr~e~~lg~--I~av~v-s~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItd 448 (668)
T COG4946 389 KDGG-----------------EVKRIEKDLGN--IEAVKV-SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITD 448 (668)
T ss_pred cCCc-----------------eEEEeeCCccc--eEEEEE-cCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEE
Confidence 9986 55566655544 999998 999999999999999999999999876554555678999
Q ss_pred EEEcCCCCeEEEEeCCC----cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEE
Q 021484 196 LEPHPHIPMFATCGIEK----TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRIT 249 (312)
Q Consensus 196 ~~~~p~~~~l~t~~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 249 (312)
+.|||+++++|-+--+| .|+++|+.++++.........-++. .+.+++++|.-
T Consensus 449 f~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsP-aFD~d~ryLYf 505 (668)
T COG4946 449 FDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSP-AFDPDGRYLYF 505 (668)
T ss_pred EEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCc-ccCCCCcEEEE
Confidence 99999999999887665 6899999998864433222211122 24556666544
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.06 E-value=9.5e-09 Score=81.42 Aligned_cols=227 Identities=15% Similarity=0.196 Sum_probs=133.6
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCee-----cCCCCCCC-CcccccccccccCCCccEEEEEEccCCC--
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHW-----YSPISSDT-PVDTFCPRHLIGKNNIHITGLAYSNTSE-- 101 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~-- 101 (312)
..-|.++.|...| .+||||..+|.|.+|.-....- ....+... ....+ +. ..-...|..+.|.+++.
T Consensus 25 adiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYL--kS--leieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 25 ADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYL--KS--LEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hcceeeEEeeccc-ceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchh--hh--hhhhhhhhhceecCCCCcc
Confidence 3468899999999 8999999999999997543221 00000000 00000 00 01246788999999875
Q ss_pred -eEEEecCCcEEEEEcCCCcCCCC-------------CcCCcccccCC------CCCceEe-cccCCceeeEEEEecCCC
Q 021484 102 -LLISYNDELVYLFEKNMGLGPSP-------------LSLSPEDLQKR------EEPQVYS-GHRNSQTVKGVNFFGPND 160 (312)
Q Consensus 102 -~l~s~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~~~~------~~~~~~~-~~~~~~~v~~v~~~s~~~ 160 (312)
+|+++.|.+|++|.+........ .+++.--+... .+.+.+. .|. -.|.++++ +.++
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt--yhiNSIS~-NsD~ 176 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT--YHINSISV-NSDK 176 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce--eEeeeeee-cCcc
Confidence 77778999999999865431110 00000001110 1112221 233 33899998 7888
Q ss_pred CEEEEeccCceEEEEeccCC-ee--EEEeecC-----ccceEEEEEcCCC-CeEEEEeCCCcEEEccCCCCC-------C
Q 021484 161 EYVMSGSDCGHLFIWKKKGG-KL--VRLMVGD-----RHVVNQLEPHPHI-PMFATCGIEKTVKLWAPMPTD-------F 224 (312)
Q Consensus 161 ~~l~~~~~dg~v~iwd~~~~-~~--~~~~~~~-----~~~v~~~~~~p~~-~~l~t~~~d~~i~iwd~~~~~-------~ 224 (312)
+.++++ .|=.|.+|++.-. +. +..++.+ +.-|++..|||.. ..|+-.+.-|+|++-|++... +
T Consensus 177 Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 177 ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 887775 5788999997632 22 2223333 3468899999975 557778889999999998432 1
Q ss_pred CCCCCC------hhhh---hhhhccCCCCceeEEecCCceEEEEEecccCc
Q 021484 225 PPLPDN------AEKI---MKANKQGREDHSRITLTPDVIMHVLRLQRRQT 266 (312)
Q Consensus 225 ~~~~~~------~~~~---~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~ 266 (312)
...+.. -..+ +....++.+++++++- .=.++++||++....
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsR-Dyltvk~wD~nme~~ 305 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR-DYLTVKLWDLNMEAK 305 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEe-ccceeEEEeccccCC
Confidence 111100 0111 2344455566776653 226899999865433
No 262
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.05 E-value=3.5e-08 Score=83.13 Aligned_cols=186 Identities=12% Similarity=0.118 Sum_probs=116.8
Q ss_pred cEE-EEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcC
Q 021484 44 NYF-AVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLG 121 (312)
Q Consensus 44 ~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~ 121 (312)
+++ ++-..++.|.+.|..+.+.+ ..+ .........+.++|+|+++..+ .|+.|.++|+.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~--------------~~i-~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~-- 68 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVV--------------ARI-PTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG-- 68 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEE--------------EEE-E-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--
T ss_pred cEEEEEecCCCEEEEEECCCCeEE--------------EEE-cCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--
Confidence 455 45567899999999988732 222 2222234457899999977665 6999999999987
Q ss_pred CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEEeccCCeeEEEeecC-------ccce
Q 021484 122 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVRLMVGD-------RHVV 193 (312)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-------~~~v 193 (312)
+.+..++... ...++++ +++|+++++++ ..+.+.++|..+.++++.+... ..++
T Consensus 69 --------------~~v~~i~~G~---~~~~i~~-s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv 130 (369)
T PF02239_consen 69 --------------KVVATIKVGG---NPRGIAV-SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRV 130 (369)
T ss_dssp --------------SEEEEEE-SS---EEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---E
T ss_pred --------------cEEEEEecCC---CcceEEE-cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCc
Confidence 6776766433 2688998 99999998775 6899999999999999888643 2467
Q ss_pred EEEEEcCCCCeEEEEeCC-CcEEEccCCCCCCCCC-CCChhhhhhhhccCCCCceeEE-ecCCceEEEEEeccc
Q 021484 194 NQLEPHPHIPMFATCGIE-KTVKLWAPMPTDFPPL-PDNAEKIMKANKQGREDHSRIT-LTPDVIMHVLRLQRR 264 (312)
Q Consensus 194 ~~~~~~p~~~~l~t~~~d-~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~i~~~~~~ 264 (312)
..+..+|..+.++..-.| +.|.+-|......... .......+....+.+++++++. ...+..+-++|..+.
T Consensus 131 ~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 131 AAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp EEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred eeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc
Confidence 788889998876666554 7787778665432110 0112222334456777776544 555678888886655
No 263
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.04 E-value=2.4e-09 Score=81.56 Aligned_cols=205 Identities=14% Similarity=0.156 Sum_probs=117.5
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccc-cccCCCccEEEEEEccCCCeEEEec------CCcEEEEEc
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH-LIGKNNIHITGLAYSNTSELLISYN------DELVYLFEK 116 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~s~~------d~~i~iwd~ 116 (312)
+.++++..||.+.+++.+... .... +...|.+ -.+.+....++++.++. -+..+.|++
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~--------------~~~~~i~~~~~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~ 166 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDL--------------ALMSRIPSIHSG-SASRKICRHGNSILSGGCGNWNAQDNFYANTL 166 (319)
T ss_pred CceEecCCCceEEEEechHHH--------------hhhhhccccccc-ccccceeecccEEecCCcceEeeccceeeecc
Confidence 579999999999999987521 0000 0011111 11223333444444432 344566666
Q ss_pred CCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccCCe-eEEEeecCccceE
Q 021484 117 NMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVN 194 (312)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~ 194 (312)
+.. +.... .+.....|++++- +|. .+.+++|+.||.+.+||.+... +...++.|+..+.
T Consensus 167 ~p~----------------~t~~~--~~~~~~~v~~l~~-hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~ 227 (319)
T KOG4714|consen 167 DPI----------------KTLIP--SKKALDAVTALCS-HPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIW 227 (319)
T ss_pred ccc----------------ccccc--cccccccchhhhC-CcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhh
Confidence 432 12111 1222223888887 565 5567888999999999998764 3455678999999
Q ss_pred EEEEcCCCC-eEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCccceeEee
Q 021484 195 QLEPHPHIP-MFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRERR 273 (312)
Q Consensus 195 ~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~~~ 273 (312)
.+-|||... .|+++++||.+-.||..+..+. +. ....+ ...+|-.-.....+.+-.+..........+.
T Consensus 228 eV~FHpk~p~~Lft~sedGslw~wdas~~~l~-i~-~~~s~--------~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD 297 (319)
T KOG4714|consen 228 EVHFHPKNPEHLFTCSEDGSLWHWDASTTFLS-IS-NQASV--------ISSWLSGDPVKSRIEITSLLPSRSLSINSFD 297 (319)
T ss_pred heeccCCCchheeEecCCCcEEEEcCCCceEE-ec-Ccccc--------ccccccCCcccceEeeeccccccceeeeeee
Confidence 999999655 5999999999999998763322 11 11111 1112222222233444433333233333444
Q ss_pred cCCCccCCCCCCCeEEEee
Q 021484 274 YNAADFESDEEEGETYLLG 292 (312)
Q Consensus 274 ~~~~~~~~~~~~~~v~~~~ 292 (312)
.-+..+..+.+.+.+|+.+
T Consensus 298 V~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 298 VLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ccCceEEeccccceEEEec
Confidence 4456666777777777764
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.9e-07 Score=78.66 Aligned_cols=198 Identities=16% Similarity=0.213 Sum_probs=128.8
Q ss_pred CccceEEEEEcCC-CCcEEEE-----EeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-
Q 021484 29 NSIRLNAIVIDPR-NPNYFAV-----GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE- 101 (312)
Q Consensus 29 h~~~v~~~~~~p~-~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 101 (312)
|..+|+.+.++|. .+..+|+ ++.-..++||........ .++ ..+.++. ..-..+.|++-|.
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~------~~~---a~ksFFk---adkvqm~WN~~gt~ 231 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH------QPV---ANKSFFK---ADKVQMKWNKLGTA 231 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc------chh---hhccccc---cceeEEEeccCCce
Confidence 5678999999996 3345555 355678999988733211 011 1112212 2223678998886
Q ss_pred --eEEEec-CC---------cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE--ec
Q 021484 102 --LLISYN-DE---------LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS--GS 167 (312)
Q Consensus 102 --~l~s~~-d~---------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~--~~ 167 (312)
+|++.. |. ++++.++.+. .....+. .. ++|.++.| ++++..+++ |-
T Consensus 232 LLvLastdVDktn~SYYGEq~Lyll~t~g~----------------s~~V~L~-k~--GPVhdv~W-~~s~~EF~VvyGf 291 (566)
T KOG2315|consen 232 LLVLASTDVDKTNASYYGEQTLYLLATQGE----------------SVSVPLL-KE--GPVHDVTW-SPSGREFAVVYGF 291 (566)
T ss_pred EEEEEEEeecCCCccccccceEEEEEecCc----------------eEEEecC-CC--CCceEEEE-CCCCCEEEEEEec
Confidence 233333 54 4788887632 2222221 23 45999999 899977654 45
Q ss_pred cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEccCCCCCCCCCCCChhhhhhhhccCCCC
Q 021484 168 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTDFPPLPDNAEKIMKANKQGRED 244 (312)
Q Consensus 168 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
+--.+.|||++ +.++..+. .++=+++-|+|.|++++.+|. -|.|-|||..+.+...-....+. ....|++++
T Consensus 292 MPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdG 366 (566)
T KOG2315|consen 292 MPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDG 366 (566)
T ss_pred ccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCC
Confidence 67789999997 78887775 456678999999999887774 48999999988664322222222 334589999
Q ss_pred ceeEEecC------CceEEEEEecc
Q 021484 245 HSRITLTP------DVIMHVLRLQR 263 (312)
Q Consensus 245 ~~l~s~~~------d~~i~i~~~~~ 263 (312)
.++++++. |+.++||+...
T Consensus 367 e~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 367 EYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred cEEEEEeccccEEecCCeEEEEecC
Confidence 99887665 57889998653
No 265
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.02 E-value=1.1e-09 Score=60.36 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=36.9
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021484 180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 218 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd 218 (312)
++++.++.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 266
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.01 E-value=8.1e-09 Score=83.30 Aligned_cols=161 Identities=8% Similarity=0.048 Sum_probs=104.5
Q ss_pred EEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC
Q 021484 91 ITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC 169 (312)
Q Consensus 91 i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d 169 (312)
...+..++.++++|.+ ++....+++...... ..++...+.....+..+..+.. +......-.+++.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~------------~~kl~~~~~v~~~~~ai~~~~~-~~sv~v~dkagD~ 131 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK------------GAKLLDVSCVPKRPTAISFIRE-DTSVLVADKAGDV 131 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC------------cceeeeEeecccCcceeeeeec-cceEEEEeecCCc
Confidence 4455677888888887 577777777765410 1134444444444333444443 3333333345556
Q ss_pred ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC-CCCCCCCC-CChhhhhhhhccCCCCcee
Q 021484 170 GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM-PTDFPPLP-DNAEKIMKANKQGREDHSR 247 (312)
Q Consensus 170 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l 247 (312)
..+.+|....+.+ ..+.+|-..+++|+|+||+++++|+..|..||+-... ...+..+. +|..-+-... . .++..|
T Consensus 132 ~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is-l-~~~~~L 208 (390)
T KOG3914|consen 132 YSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS-L-TDNYLL 208 (390)
T ss_pred eeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee-e-ccCcee
Confidence 6677776665443 4456899999999999999999999999999996544 33444443 4555543222 2 244568
Q ss_pred EEecCCceEEEEEecccCcc
Q 021484 248 ITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 248 ~s~~~d~~i~i~~~~~~~~~ 267 (312)
++++.|+++++||+.++..+
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eecCCCCcEEEEecccCCcc
Confidence 99999999999999887554
No 267
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=1.1e-07 Score=90.39 Aligned_cols=229 Identities=9% Similarity=0.100 Sum_probs=129.0
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccc-ccCCCccEEEEEEcc-CCCeEEEe-cC
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IGKNNIHITGLAYSN-TSELLISY-ND 108 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~l~s~-~d 108 (312)
....+++++++..++++-..++.|+.+|+.++.+............+..... ....-.....++++| ++.++++. .+
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence 4578999998733444445668899999877653211110000000000000 000012345889999 45566664 68
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCE-EEEeccCceEEEEeccCCeeEEEee
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEY-VMSGSDCGHLFIWKKKGGKLVRLMV 187 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~ 187 (312)
+.|++||..++.... +....... .................+++ +|+++. +++-+.++.|++||+.++.......
T Consensus 705 ~~I~v~d~~~g~v~~---~~G~G~~~-~~~g~~~~~~~~~~P~GIav-spdG~~LYVADs~n~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 705 HQIWEYNISDGVTRV---FSGDGYER-NLNGSSGTSTSFAQPSGISL-SPDLKELYIADSESSSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred CeEEEEECCCCeEEE---EecCCccc-cCCCCccccccccCccEEEE-eCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 999999987652000 00000000 00000000000012567898 898884 4566678999999998765321110
Q ss_pred c-------------C--------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChh-------------h
Q 021484 188 G-------------D--------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAE-------------K 233 (312)
Q Consensus 188 ~-------------~--------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-------------~ 233 (312)
+ + -.....++++++|..+++-..++.|++||+.++.+..+.+... .
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~ 859 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS 859 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC
Confidence 0 0 1134688999999998888899999999998765433221110 0
Q ss_pred hhhhhccCCCCceeEEecCCceEEEEEecccC
Q 021484 234 IMKANKQGREDHSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 234 ~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~ 265 (312)
...-....++++.+++-+.++.|++|++.+..
T Consensus 860 ~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 860 EPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 11122345678889999999999999987754
No 268
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=3.2e-07 Score=78.84 Aligned_cols=176 Identities=13% Similarity=0.075 Sum_probs=106.2
Q ss_pred ceEEEEEcCCCCcEEEEEeC---CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec
Q 021484 32 RLNAIVIDPRNPNYFAVGGS---DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN 107 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~ 107 (312)
......|+|++..+++..+. +..|.++|+.+++.. .+ ....+......|+|||+.++. ..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~---------------~l-t~~~g~~~~~~~SPDG~~la~~~~ 252 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKE---------------KI-ASSQGMLVVSDVSKDGSKLLLTMA 252 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEE---------------EE-ecCCCcEEeeEECCCCCEEEEEEc
Confidence 56789999999544554333 356888999877521 11 112344556789999985543 32
Q ss_pred ---CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEeccCCe
Q 021484 108 ---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKGGK 181 (312)
Q Consensus 108 ---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~~~~ 181 (312)
+..|+++|+.++ . .+.+..+... .....| +|+|+.|+..+. .+ .|++.|+.+++
T Consensus 253 ~~g~~~Iy~~dl~~g----------------~-~~~LT~~~~~--d~~p~~-SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~ 312 (419)
T PRK04043 253 PKGQPDIYLYDTNTK----------------T-LTQITNYPGI--DVNGNF-VEDDKRIVFVSDRLGYPNIFMKKLNSGS 312 (419)
T ss_pred cCCCcEEEEEECCCC----------------c-EEEcccCCCc--cCccEE-CCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 457888898765 2 3333333321 234568 999987766553 23 68888888777
Q ss_pred eEEEeecCccceEEEEEcCCCCeEEEEeCC---------CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeE
Q 021484 182 LVRLMVGDRHVVNQLEPHPHIPMFATCGIE---------KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRI 248 (312)
Q Consensus 182 ~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 248 (312)
..+.... .. ....|+|+|+.++..+.. ..|.+.|+.++....+.... ......|+++++.++
T Consensus 313 ~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~--~~~~p~~SPDG~~I~ 383 (419)
T PRK04043 313 VEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG--VNQFPRFSSDGGSIM 383 (419)
T ss_pred eEeCccC-CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC--CcCCeEECCCCCEEE
Confidence 6433321 11 134899999997766643 26788888887755554321 111233566665444
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.97 E-value=4e-07 Score=70.11 Aligned_cols=190 Identities=10% Similarity=-0.009 Sum_probs=119.2
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--CeEEEecCCcEEEEEcCCCcC
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--ELLISYNDELVYLFEKNMGLG 121 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~s~~d~~i~iwd~~~~~~ 121 (312)
.+||.|+..|...+|...+.+. ...+...|...|+-+.-.-+. .+++++.|.++++.++..+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~--------------h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~-- 148 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDG--------------HLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGD-- 148 (344)
T ss_pred cEEEeccccceeeeecccCccc--------------ceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecC--
Confidence 4789999999999999987651 111112222322222111122 3566667888888888764
Q ss_pred CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeE-EEee-cCccceEEEEE
Q 021484 122 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLV-RLMV-GDRHVVNQLEP 198 (312)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~-~~~~-~~~~~v~~~~~ 198 (312)
...... |.....+.++++ +++++++++.+....|..|.+... +.+ .... ..+..-.+..|
T Consensus 149 --------------s~~~~~--h~~~~~~ns~~~-snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 149 --------------SNKFAV--HNQNLTQNSLHY-SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF 211 (344)
T ss_pred --------------ccccee--eccccceeeeEE-cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence 222222 222123788998 999999999999999999987643 222 2122 22334467889
Q ss_pred cCCCCeEEEEeCCCcEEEccCCCCCC-----CCCCCChhhhhhhhccCCC--CceeEEecCCceEEEEEecccCc
Q 021484 199 HPHIPMFATCGIEKTVKLWAPMPTDF-----PPLPDNAEKIMKANKQGRE--DHSRITLTPDVIMHVLRLQRRQT 266 (312)
Q Consensus 199 ~p~~~~l~t~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~--~~~l~s~~~d~~i~i~~~~~~~~ 266 (312)
+.....+|++..||++.|||++.... ..-..+.+..+....+++- -.+|+-.-.-+.+.+.|++....
T Consensus 212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 212 SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 99999999999999999999986532 2222345555555555542 22343334447788888876543
No 270
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.95 E-value=6.9e-07 Score=75.23 Aligned_cols=201 Identities=12% Similarity=0.117 Sum_probs=120.4
Q ss_pred ceEEEEEcCCCCcEEEEEeC----CCeEEEEEccCC--eecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 32 RLNAIVIDPRNPNYFAVGGS----DEYARVYDIRKC--HWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~----dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
...-++++|++ ++|++... ++.|..|.+... ++. ..... .........++++|++++|++
T Consensus 38 ~Ps~l~~~~~~-~~LY~~~e~~~~~g~v~~~~i~~~~g~L~------------~~~~~-~~~g~~p~~i~~~~~g~~l~v 103 (345)
T PF10282_consen 38 NPSWLAVSPDG-RRLYVVNEGSGDSGGVSSYRIDPDTGTLT------------LLNSV-PSGGSSPCHIAVDPDGRFLYV 103 (345)
T ss_dssp SECCEEE-TTS-SEEEEEETTSSTTTEEEEEEEETTTTEEE------------EEEEE-EESSSCEEEEEECTTSSEEEE
T ss_pred CCceEEEEeCC-CEEEEEEccccCCCCEEEEEECCCcceeE------------Eeeee-ccCCCCcEEEEEecCCCEEEE
Confidence 35668899998 66666654 679999998763 321 01111 112445667999999997777
Q ss_pred e--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCc---eEe--c------ccCCceeeEEEEecCCCCEEEEec-cCce
Q 021484 106 Y--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ---VYS--G------HRNSQTVKGVNFFGPNDEYVMSGS-DCGH 171 (312)
Q Consensus 106 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~------~~~~~~v~~v~~~s~~~~~l~~~~-~dg~ 171 (312)
+ .+|.|.++++.... .+.. .+. + ........++.| +|+++++++.. ....
T Consensus 104 any~~g~v~v~~l~~~g---------------~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~-~pdg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 104 ANYGGGSVSVFPLDDDG---------------SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF-SPDGRFVYVPDLGADR 167 (345)
T ss_dssp EETTTTEEEEEEECTTS---------------EEEEEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTE
T ss_pred EEccCCeEEEEEccCCc---------------ccceeeeecccCCCCCcccccccccceeEEE-CCCCCEEEEEecCCCE
Confidence 5 49999999997631 1111 111 0 011123678888 99999887754 3457
Q ss_pred EEEEeccCCe--e--EEEee-cCccceEEEEEcCCCCeEEEEe-CCCcEEEccCC--CCCC------CCCCCC-h-hhhh
Q 021484 172 LFIWKKKGGK--L--VRLMV-GDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPM--PTDF------PPLPDN-A-EKIM 235 (312)
Q Consensus 172 v~iwd~~~~~--~--~~~~~-~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~--~~~~------~~~~~~-~-~~~~ 235 (312)
|.+|++.... . ...+. ........++|+|+++++...+ .+++|.++++. .+.+ ..++.. . ....
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 9999987654 2 22222 2234678999999999865554 67889999887 3221 112110 0 0012
Q ss_pred hhhccCCCCceeE-EecCCceEEEEEec
Q 021484 236 KANKQGREDHSRI-TLTPDVIMHVLRLQ 262 (312)
Q Consensus 236 ~~~~~~~~~~~l~-s~~~d~~i~i~~~~ 262 (312)
.....++++++|. +-.....|.++++.
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 2234567777655 45566889999984
No 271
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=3.9e-09 Score=83.63 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=109.3
Q ss_pred eEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-
Q 021484 102 LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG- 180 (312)
Q Consensus 102 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~- 180 (312)
.+++|.+..+-+-|+.++ ..+.|. .... |.++.| ...+++++.|+..|.|..+|++..
T Consensus 227 hfs~G~sqqv~L~nvetg-----------------~~qsf~-sksD--VfAlQf-~~s~nLv~~GcRngeI~~iDLR~rn 285 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETG-----------------HQQSFQ-SKSD--VFALQF-AGSDNLVFNGCRNGEIFVIDLRCRN 285 (425)
T ss_pred eecccccceeEEEEeecc-----------------cccccc-cchh--HHHHHh-cccCCeeEecccCCcEEEEEeeecc
Confidence 344466888888898886 445555 3333 888998 778999999999999999999864
Q ss_pred ----eeEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEccCCCCC----CCCCCCChhhhhhh-hccCCCCceeEEe
Q 021484 181 ----KLVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWAPMPTD----FPPLPDNAEKIMKA-NKQGREDHSRITL 250 (312)
Q Consensus 181 ----~~~~~~~~~~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~l~s~ 250 (312)
.+...+. |...|+++..-. ++++|++.+.+|+|++||++.-+ +....+|.+..... .-...+...++++
T Consensus 286 qG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~ 364 (425)
T KOG2695|consen 286 QGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSV 364 (425)
T ss_pred cCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEc
Confidence 3444444 888999988777 77889999999999999988543 45566776544222 2244567889999
Q ss_pred cCCceEEEEEecccCcc
Q 021484 251 TPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 251 ~~d~~i~i~~~~~~~~~ 267 (312)
+.|...|||.++.++.+
T Consensus 365 GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHLL 381 (425)
T ss_pred cCeeEEEEEecccCcee
Confidence 99999999999977655
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.91 E-value=2.8e-07 Score=87.78 Aligned_cols=187 Identities=10% Similarity=0.014 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC-eEEEe-cCCc
Q 021484 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE-LLISY-NDEL 110 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~s~-~d~~ 110 (312)
...++|+|++..++++.+.++.|++||..++............ ...........-.....++++|++. ++++. .++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~-~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER-NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc-cCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 3579999955477788888999999999876532110000000 0000000001123456899999998 44443 5899
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc------CCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEE
Q 021484 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR------NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVR 184 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~ 184 (312)
|++||+.++..... ...+.........+-... .......+++ +++|+.+++-..++.|++||..++....
T Consensus 764 Irv~D~~tg~~~~~---~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvav-d~dG~LYVADs~N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 764 IRALDLKTGGSRLL---AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLC-AKDGQIYVADSYNHKIKKLDPATKRVTT 839 (1057)
T ss_pred EEEEECCCCcEEEE---EecccccCcccccccCCCCchhhhhccCCceeeE-eCCCcEEEEECCCCEEEEEECCCCeEEE
Confidence 99999876520000 000000000000000000 0011457888 8999988999999999999998776543
Q ss_pred Eee-------------cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484 185 LMV-------------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 185 ~~~-------------~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
... +.-.....++++++|+.+++.+.++.|++||+.++..
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 321 1112467899999999988888999999999988653
No 273
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=1.7e-07 Score=80.47 Aligned_cols=157 Identities=8% Similarity=0.000 Sum_probs=92.8
Q ss_pred cceEEEEEcCCCCcEEEEEeCC--CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021484 31 IRLNAIVIDPRNPNYFAVGGSD--EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 107 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~- 107 (312)
+......|+|++..++++.+.+ ..|.++++.+++.. .+ ..+........|+|+|+.|+-.+
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~---------------~L-T~~~~~d~~p~~SPDG~~I~F~Sd 296 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT---------------QI-TNYPGIDVNGNFVEDDKRIVFVSD 296 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE---------------Ec-ccCCCccCccEECCCCCEEEEEEC
Confidence 3456678999996565555544 45777787766521 11 11122233457999998555432
Q ss_pred -CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC---------ceEEEE
Q 021484 108 -DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---------GHLFIW 175 (312)
Q Consensus 108 -d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---------g~v~iw 175 (312)
.+ .|++.|+.++ +..+... ... ....| +|+|++|+..... ..|.+.
T Consensus 297 r~g~~~Iy~~dl~~g----------------~~~rlt~-~g~----~~~~~-SPDG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 297 RLGYPNIFMKKLNSG----------------SVEQVVF-HGK----NNSSV-STYKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred CCCCceEEEEECCCC----------------CeEeCcc-CCC----cCceE-CCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 22 6888888775 2222211 111 11367 9999988766543 368888
Q ss_pred eccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC-C--cEEEccCCCCCCCCC
Q 021484 176 KKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-K--TVKLWAPMPTDFPPL 227 (312)
Q Consensus 176 d~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d-~--~i~iwd~~~~~~~~~ 227 (312)
|+.+++. ..+... .......|+|+|+.++....+ + .+.+.++.......+
T Consensus 355 d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 355 STNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred ECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEe
Confidence 9887764 344332 233458899999986655532 2 366677766543333
No 274
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.87 E-value=1e-07 Score=74.75 Aligned_cols=184 Identities=16% Similarity=0.183 Sum_probs=117.9
Q ss_pred cceEEEEEcC-CCCcEEEEEeCCCeEEEEEccCCeecCCCC----------CCCCccc-----------------cccc-
Q 021484 31 IRLNAIVIDP-RNPNYFAVGGSDEYARVYDIRKCHWYSPIS----------SDTPVDT-----------------FCPR- 81 (312)
Q Consensus 31 ~~v~~~~~~p-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~-----------------~~~~- 81 (312)
..|..+.|.. .+..-++..+.|.+|++|.+....+....+ -..|+.+ ..+.
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 4578888865 344567778899999999998663321110 0111111 1111
Q ss_pred ccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC---ceeeEEEEecC
Q 021484 82 HLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS---QTVKGVNFFGP 158 (312)
Q Consensus 82 ~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~~s~ 158 (312)
.....|...|.++.|+.+.+.++++.|-.|.+|++.-..+ .+.+ ..++.|.-. ..|++..|++.
T Consensus 166 vyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~----sFnI---------VDiKP~nmeeLteVItSaeFhp~ 232 (460)
T COG5170 166 VYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDG----SFNI---------VDIKPHNMEELTEVITSAEFHPE 232 (460)
T ss_pred eccccceeEeeeeeecCchheeeeccceeeeeccccccCC----ceEE---------EeccCccHHHHHHHHhhcccCHh
Confidence 1225688889999999999999999999999999875421 1111 111122110 22778888333
Q ss_pred CCCEEEEeccCceEEEEeccCCeeE------EE----------eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484 159 NDEYVMSGSDCGHLFIWKKKGGKLV------RL----------MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~~~~------~~----------~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
....+.-.+..|.|++-|++..... .. +.+-...|.++.|+|+|+++++-+. -+|++||.+..
T Consensus 233 ~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 233 MCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred HcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 4566777888999999999843221 11 1112347889999999999988764 68999998765
Q ss_pred C--CCCCC
Q 021484 223 D--FPPLP 228 (312)
Q Consensus 223 ~--~~~~~ 228 (312)
+ +.+++
T Consensus 312 k~pikTi~ 319 (460)
T COG5170 312 KNPIKTIP 319 (460)
T ss_pred cCCceeec
Confidence 4 45544
No 275
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=7.4e-08 Score=83.59 Aligned_cols=226 Identities=12% Similarity=0.142 Sum_probs=128.2
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 105 (312)
-||+..|.-+.|+.+. +.|.+...+|-|.+|-+-.+.+. ...+-......|.++.|+.+|..++.
T Consensus 68 eGH~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgsW~-------------EEMiNnRnKSvV~SmsWn~dG~kIcIv 133 (1189)
T KOG2041|consen 68 EGHNASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGSWC-------------EEMINNRNKSVVVSMSWNLDGTKICIV 133 (1189)
T ss_pred ccCcceEEEEEecccc-ccccccCCCceEEEEeeecccHH-------------HHHhhCcCccEEEEEEEcCCCcEEEEE
Confidence 4899999999999988 78999999999999999988753 22232455677999999999986665
Q ss_pred ecCCcEEEEEcCCCc-------CC--------CCCcCCcccccCCC---------CCceEeccc-CC---------ceee
Q 021484 106 YNDELVYLFEKNMGL-------GP--------SPLSLSPEDLQKRE---------EPQVYSGHR-NS---------QTVK 151 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~-------~~--------~~~~~~~~~~~~~~---------~~~~~~~~~-~~---------~~v~ 151 (312)
..||.|.+=.+..+. +. .+...-......++ ....+.... .. ..+.
T Consensus 134 YeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia 213 (1189)
T KOG2041|consen 134 YEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIA 213 (1189)
T ss_pred EccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCcccc
Confidence 579988766555431 00 00000000000000 000000000 00 0011
Q ss_pred EEEEe-------cCCCCEEEEeccCceEEEEecc-CCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC---------cE
Q 021484 152 GVNFF-------GPNDEYVMSGSDCGHLFIWKKK-GGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK---------TV 214 (312)
Q Consensus 152 ~v~~~-------s~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~---------~i 214 (312)
.+.|+ .|+...|+.+-..|.+.+-.-. ..+++ .+. ..-.+..+.|+++|..||.++.+. .|
T Consensus 214 ~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv-v~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v 291 (1189)
T KOG2041|consen 214 EIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV-VVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKV 291 (1189)
T ss_pred ceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe-EEe-cccEeecceecCCCcEEEEccCcccccCccccceE
Confidence 22221 2344455555555555544322 12222 111 124577889999999999998542 57
Q ss_pred EEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcccee
Q 021484 215 KLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYR 270 (312)
Q Consensus 215 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~ 270 (312)
.+|.+-+....++......+....| .. ..+.++...|+.+.+-+++..-+.-|.
T Consensus 292 ~Fysp~G~i~gtlkvpg~~It~lsW-Eg-~gLriA~AvdsfiyfanIRP~ykWgy~ 345 (1189)
T KOG2041|consen 292 HFYSPYGHIVGTLKVPGSCITGLSW-EG-TGLRIAIAVDSFIYFANIRPEYKWGYI 345 (1189)
T ss_pred EEeccchhheEEEecCCceeeeeEE-cC-CceEEEEEecceEEEEeecccceEEEe
Confidence 7777666555555434444433333 22 345667777888888777765444443
No 276
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.87 E-value=5.3e-09 Score=98.66 Aligned_cols=151 Identities=15% Similarity=0.262 Sum_probs=116.3
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e-c-
Q 021484 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-N- 107 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~- 107 (312)
.+|+.+.|+.+| +.+..+..||.+.+|..... +..-...|........|-. ..+++ + +
T Consensus 2252 s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~pk----------------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~ 2312 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQG-NKFGIVDGDGDLSLWQASPK----------------PYTSWQCHNKALSDFRFIG--SLLATAGRSS 2312 (2439)
T ss_pred chhhhhhhcccC-CceeeeccCCceeecccCCc----------------ceeccccCCccccceeeee--hhhhccccCC
Confidence 678999999999 89999999999999998732 2222267888888888876 44554 3 2
Q ss_pred -CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 108 -DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 108 -d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
++.+.+||..-.. ..-..-..|... +++++| -|..+.|++|+.+|.|++||++..+..+.+
T Consensus 2313 d~~n~~lwDtl~~~---------------~~s~v~~~H~~g--aT~l~~-~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2313 DNRNVCLWDTLLPP---------------MNSLVHTCHDGG--ATVLAY-APKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred CCCcccchhcccCc---------------ccceeeeecCCC--ceEEEE-cCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence 7789999975431 122223678776 999999 899999999999999999999988777666
Q ss_pred ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCC
Q 021484 187 VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLP 228 (312)
Q Consensus 187 ~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~ 228 (312)
+. ++ ...++++++..|.|+||++.... +.+++
T Consensus 2375 ~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2375 QA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred hh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 53 44 66789999999999999988654 34444
No 277
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.83 E-value=1.4e-06 Score=67.84 Aligned_cols=168 Identities=15% Similarity=0.214 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-------CeEEE
Q 021484 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-------ELLIS 105 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~s 105 (312)
=.-++|||++ .+||.+...|+|++||+....+..... . .. ....-...|..+.|-+.. ++|+.
T Consensus 46 WRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~I~p-~---~~-----~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi 115 (282)
T PF15492_consen 46 WRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFVIPP-A---MS-----FPGDLSDAIAGLIFLEYKKSAQWSYELLVI 115 (282)
T ss_pred heEEEECCCC-cEEEEEcCCCeEEEEecccceeEEcCc-c---cc-----cCCccccceeeeEeeccccccccceeEEEE
Confidence 3579999999 899999999999999998655432211 0 00 112224567777665432 35566
Q ss_pred ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec---ccCCceeeEEEEecCCCCEEEEeccCc-----------e
Q 021484 106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG---HRNSQTVKGVNFFGPNDEYVMSGSDCG-----------H 171 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~s~~~~~l~~~~~dg-----------~ 171 (312)
.-.|.++-|-+..+. .+..+....+.. +... |.++.| +|..++|+.|+... -
T Consensus 116 ~Y~G~L~Sy~vs~gt-----------~q~y~e~hsfsf~~~yp~G--i~~~vy-~p~h~LLlVgG~~~~~~~~s~a~~~G 181 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGT-----------NQGYQENHSFSFSSHYPHG--INSAVY-HPKHRLLLVGGCEQNQDGMSKASSCG 181 (282)
T ss_pred eccceeeeEEEEccc-----------CCcceeeEEEEecccCCCc--eeEEEE-cCCCCEEEEeccCCCCCccccccccC
Confidence 667777766653210 001122233332 2334 999999 89888888776411 2
Q ss_pred EEEEeccCCeeE-----------------------EE---e---ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484 172 LFIWKKKGGKLV-----------------------RL---M---VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 172 v~iwd~~~~~~~-----------------------~~---~---~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
+..|.+-++.+. .. + ......|..|..||+|..||+...+|.|.+|++.+-
T Consensus 182 LtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 182 LTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred ceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 556653322110 00 0 112457889999999999999999999999998775
Q ss_pred CC
Q 021484 223 DF 224 (312)
Q Consensus 223 ~~ 224 (312)
.+
T Consensus 262 ~~ 263 (282)
T PF15492_consen 262 RL 263 (282)
T ss_pred hh
Confidence 53
No 278
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.82 E-value=1.9e-06 Score=72.53 Aligned_cols=167 Identities=13% Similarity=0.147 Sum_probs=102.4
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-ec-C
Q 021484 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-YN-D 108 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~~-d 108 (312)
....++.|+|++..++++--....|.+|++..... .+.. ...+..........++|+|+++++.. .. +
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~--------~l~~--~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s 213 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTG--------KLTP--VDSIKVPPGSGPRHLAFSPDGKYAYVVNELS 213 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS---------TEEE--EEEEECSTTSSEEEEEE-TTSSEEEEEETTT
T ss_pred ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCc--------eEEE--eeccccccCCCCcEEEEcCCcCEEEEecCCC
Confidence 45788999999944444444556899999976541 0100 11111233456789999999986655 44 8
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc----cCCceeeEEEEecCCCCEEEEec-cCceEEEEecc--CCe
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH----RNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKK--GGK 181 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~--~~~ 181 (312)
+.|.++++....+ ..+..+..... ........+++ +|++++|+++. ....|.+|++. +++
T Consensus 214 ~~v~v~~~~~~~g------------~~~~~~~~~~~~~~~~~~~~~~~i~i-spdg~~lyvsnr~~~sI~vf~~d~~~g~ 280 (345)
T PF10282_consen 214 NTVSVFDYDPSDG------------SLTEIQTISTLPEGFTGENAPAEIAI-SPDGRFLYVSNRGSNSISVFDLDPATGT 280 (345)
T ss_dssp TEEEEEEEETTTT------------EEEEEEEEESCETTSCSSSSEEEEEE--TTSSEEEEEECTTTEEEEEEECTTTTT
T ss_pred CcEEEEeecccCC------------ceeEEEEeeeccccccccCCceeEEE-ecCCCEEEEEeccCCEEEEEEEecCCCc
Confidence 9999999873210 00111222111 11113678888 99999987765 46789999984 333
Q ss_pred --eEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCC
Q 021484 182 --LVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPM 220 (312)
Q Consensus 182 --~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~ 220 (312)
.+..+.........++++|+|++|++++ .++.|.+|++.
T Consensus 281 l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 281 LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 3344444344578999999999988776 66789999764
No 279
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.81 E-value=7.7e-07 Score=83.38 Aligned_cols=207 Identities=10% Similarity=0.092 Sum_probs=123.7
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCC-------CCCc-----------------------cccc
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-------DTPV-----------------------DTFC 79 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~-----------------------~~~~ 79 (312)
..+|.+++|||++ .+|+..+.++++.+... +.+++.+... ..++ +...
T Consensus 120 d~GI~a~~WSPD~-Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 120 DSGILAASWSPDE-ELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred cCcEEEEEECCCc-CEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 4589999999999 79999888899887653 2322211100 0000 0000
Q ss_pred c----cccccCCCccEEEEEEccCCCeEEEec----C---CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCc
Q 021484 80 P----RHLIGKNNIHITGLAYSNTSELLISYN----D---ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ 148 (312)
Q Consensus 80 ~----~~~~~~~~~~i~~~~~~~~~~~l~s~~----d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (312)
. ...+. ....-..|+|-.||+++|.+. . ..++||+.+. .+..+...-. +
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-----------------~L~stSE~v~--g 257 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-----------------ELQSTSEPVD--G 257 (928)
T ss_pred CCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-----------------eEEeccccCC--C
Confidence 0 00111 334566899999999888742 3 3689998763 2222222111 1
Q ss_pred eeeEEEEecCCCCEEEEecc---CceEEEEeccCCeeEEEee----cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484 149 TVKGVNFFGPNDEYVMSGSD---CGHLFIWKKKGGKLVRLMV----GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 149 ~v~~v~~~s~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
--..++| .|.|++||+... ...|.+|.-+ |-.-..|. .....|..+.|++++..||..-.|. |.+|....
T Consensus 258 Le~~l~W-rPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 258 LEGALSW-RPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred ccCCccC-CCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence 1457888 999999998764 4567777643 43333332 3456899999999999999977555 99998877
Q ss_pred CCC---CCCCCChhhhhhhhccCCC-CceeEEecCCceEEEEEe
Q 021484 222 TDF---PPLPDNAEKIMKANKQGRE-DHSRITLTPDVIMHVLRL 261 (312)
Q Consensus 222 ~~~---~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~i~~~ 261 (312)
... ..+.-..........|+++ ...|..++.++.+..+++
T Consensus 335 YHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 335 YHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 652 1111111111222556764 455666666666655543
No 280
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.81 E-value=8.8e-06 Score=65.47 Aligned_cols=212 Identities=8% Similarity=0.142 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCcEEEEEe-CCCeEEEEEccC-CeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec--C
Q 021484 33 LNAIVIDPRNPNYFAVGG-SDEYARVYDIRK-CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN--D 108 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~--d 108 (312)
-+-+++++++ ++++++. .-|.|.++-++. +.+....+....... .+ +. .-....+....+.|++++|++.. -
T Consensus 91 p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~-~p-~~-rQ~~~h~H~a~~tP~~~~l~v~DLG~ 166 (346)
T COG2706 91 PCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS-GP-HE-RQESPHVHSANFTPDGRYLVVPDLGT 166 (346)
T ss_pred CeEEEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeeecCCC-CC-Cc-cccCCccceeeeCCCCCEEEEeecCC
Confidence 3778999998 5666664 568999999965 432211110000000 00 00 00122377889999999888863 6
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-CceEEEEeccCC-eeEEEe
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CGHLFIWKKKGG-KLVRLM 186 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg~v~iwd~~~~-~~~~~~ 186 (312)
..|.+|++..+.. ..... ..+ ..... .+.+.| +|++++..+.++ +++|.+|..+.. ..+..+
T Consensus 167 Dri~~y~~~dg~L-----------~~~~~-~~v-~~G~G--PRHi~F-Hpn~k~aY~v~EL~stV~v~~y~~~~g~~~~l 230 (346)
T COG2706 167 DRIFLYDLDDGKL-----------TPADP-AEV-KPGAG--PRHIVF-HPNGKYAYLVNELNSTVDVLEYNPAVGKFEEL 230 (346)
T ss_pred ceEEEEEcccCcc-----------ccccc-ccc-CCCCC--cceEEE-cCCCcEEEEEeccCCEEEEEEEcCCCceEEEe
Confidence 7899999986510 00011 111 12222 689999 999999876665 899999998763 223333
Q ss_pred ec---------CccceEEEEEcCCCCeEEEEe-CCCcEEEccCCC--CCCCC--CCCChhhhhhhhccCCCCceeEEecC
Q 021484 187 VG---------DRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMP--TDFPP--LPDNAEKIMKANKQGREDHSRITLTP 252 (312)
Q Consensus 187 ~~---------~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~ 252 (312)
+. .......+..+|+|++|.++. ....|-+|.+.. +++.. ...........-.+.+.+++|++...
T Consensus 231 Q~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 231 QTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred eeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEcc
Confidence 22 123567889999999988876 344777776543 33211 11111111122224556777777665
Q ss_pred C-ceEEEEEeccc
Q 021484 253 D-VIMHVLRLQRR 264 (312)
Q Consensus 253 d-~~i~i~~~~~~ 264 (312)
+ ..+.++.+...
T Consensus 311 ~sd~i~vf~~d~~ 323 (346)
T COG2706 311 KSDNITVFERDKE 323 (346)
T ss_pred CCCcEEEEEEcCC
Confidence 5 57888876544
No 281
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=1.3e-08 Score=80.75 Aligned_cols=134 Identities=15% Similarity=0.106 Sum_probs=97.2
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-CCCeEEEe-c
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-TSELLISY-N 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~s~-~ 107 (312)
+..|.++.|...+ +++..|..+|.|..+|++.+..-.. ...+. -.|...|+++..-. ++++|.++ .
T Consensus 252 ksDVfAlQf~~s~-nLv~~GcRngeI~~iDLR~rnqG~~----------~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M 319 (425)
T KOG2695|consen 252 KSDVFALQFAGSD-NLVFNGCRNGEIFVIDLRCRNQGNG----------WCAQR-LYHDSSVTSLQILQFSQQKLMASDM 319 (425)
T ss_pred chhHHHHHhcccC-CeeEecccCCcEEEEEeeecccCCC----------cceEE-EEcCcchhhhhhhccccceEeeccC
Confidence 5578888898877 7999999999999999997631100 11111 34778888887665 55666655 6
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV 187 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 187 (312)
+|+|.+||++.-+ ..+-++.+.||.+...-.-+-. .+....+++++.|.-.+||.++.++.+.+++
T Consensus 320 ~gkikLyD~R~~K-------------~~~~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 320 TGKIKLYDLRATK-------------CKKSVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred cCceeEeeehhhh-------------cccceeeeeccccccccccccc-ccccceEEEccCeeEEEEEecccCceeeccC
Confidence 9999999998651 1123788999976533222333 6677888999999999999999999998886
Q ss_pred cC
Q 021484 188 GD 189 (312)
Q Consensus 188 ~~ 189 (312)
-.
T Consensus 386 f~ 387 (425)
T KOG2695|consen 386 FP 387 (425)
T ss_pred CC
Confidence 43
No 282
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.80 E-value=1.9e-06 Score=71.46 Aligned_cols=206 Identities=13% Similarity=0.091 Sum_probs=123.1
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEe-C-CCeEEEEEccCCeecCCCCCCCCcccc
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGG-S-DEYARVYDIRKCHWYSPISSDTPVDTF 78 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~ 78 (312)
|.+||+.+.+...-+.+...+. -+ .......++++|+| +.+++.. . +..|.+.|+.+++.+.++..+.+...+
T Consensus 79 V~v~D~~t~~~~~~i~~p~~p~--~~--~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy 153 (352)
T TIGR02658 79 VEVIDPQTHLPIADIELPEGPR--FL--VGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIF 153 (352)
T ss_pred EEEEECccCcEEeEEccCCCch--hh--ccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEE
Confidence 5688888877655555432210 00 01223478999999 6666554 4 799999999999887765543322221
Q ss_pred ccc------ccccC----------CCccEEEE--------------EEcc-CCCeEEEecCCcEEEEEcCCCcCCCCCcC
Q 021484 79 CPR------HLIGK----------NNIHITGL--------------AYSN-TSELLISYNDELVYLFEKNMGLGPSPLSL 127 (312)
Q Consensus 79 ~~~------~~~~~----------~~~~i~~~--------------~~~~-~~~~l~s~~d~~i~iwd~~~~~~~~~~~~ 127 (312)
... ....+ ........ .|.+ +|+++..+..|.|++.|+...... ..
T Consensus 154 ~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~---~~ 230 (352)
T TIGR02658 154 PTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAK---FL 230 (352)
T ss_pred EecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcce---ec
Confidence 100 00000 00001111 2334 777666665599999997543100 00
Q ss_pred CcccccCCCCCceEecc-----cCCceeeEEEEecCCCCEEEEec----------cCceEEEEeccCCeeEEEeecCccc
Q 021484 128 SPEDLQKREEPQVYSGH-----RNSQTVKGVNFFGPNDEYVMSGS----------DCGHLFIWKKKGGKLVRLMVGDRHV 192 (312)
Q Consensus 128 ~~~~~~~~~~~~~~~~~-----~~~~~v~~v~~~s~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~~ 192 (312)
+....+... -.+....-+++ +++++.+++.. ..+.|.++|..+++.+..+.. ...
T Consensus 231 --------~~~~~~~~~~~~~~wrP~g~q~ia~-~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~ 300 (352)
T TIGR02658 231 --------PAIEAFTEAEKADGWRPGGWQQVAY-HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHE 300 (352)
T ss_pred --------ceeeeccccccccccCCCcceeEEE-cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCc
Confidence 111111100 00111344888 89998888743 225799999999999988874 347
Q ss_pred eEEEEEcCCCC-eEEEEe-CCCcEEEccCCCCCC
Q 021484 193 VNQLEPHPHIP-MFATCG-IEKTVKLWAPMPTDF 224 (312)
Q Consensus 193 v~~~~~~p~~~-~l~t~~-~d~~i~iwd~~~~~~ 224 (312)
+..++++|+++ .|++.+ .++.|.+.|..+++.
T Consensus 301 ~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 301 IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 88999999999 766555 688999999988864
No 283
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=2.9e-06 Score=71.79 Aligned_cols=112 Identities=10% Similarity=0.071 Sum_probs=74.1
Q ss_pred eeEEEEecCCCCEEEEecc---CceEEEEeccC-C---eeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEccC
Q 021484 150 VKGVNFFGPNDEYVMSGSD---CGHLFIWKKKG-G---KLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAP 219 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~---dg~v~iwd~~~-~---~~~~~~~~~~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~ 219 (312)
|...+| .|.|..+++-+. ..++.+|.+.+ . +.+..+. ....+.+.|+|.|++++.+. ..|.+.++|.
T Consensus 448 vi~FaW-EP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 448 VIAFAW-EPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred eeeeee-ccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEec
Confidence 677788 888887765443 45678887763 2 2233332 34568899999999977664 5789999998
Q ss_pred CCCCCCCCCCChhhhhhhhccCCCCceeEEecCC------ceEEEEEeccc
Q 021484 220 MPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD------VIMHVLRLQRR 264 (312)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~i~~~~~~ 264 (312)
.-..................|.|.++++++++.- .-.++|+++..
T Consensus 525 ~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 525 DYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGR 575 (698)
T ss_pred chhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecH
Confidence 7533322222222334556789999999998764 45678887643
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.74 E-value=1.5e-06 Score=67.09 Aligned_cols=147 Identities=10% Similarity=-0.050 Sum_probs=101.0
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCc--cEEEEEEccCCCeEEE-ecCCcEEEEEcCCCc
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNI--HITGLAYSNTSELLIS-YNDELVYLFEKNMGL 120 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~s-~~d~~i~iwd~~~~~ 120 (312)
..+..++.|.++++.++..+... . ..|.. .+.+++++++++++++ +....|..|.+....
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~--------------~---~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~s 191 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNK--------------F---AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDES 191 (344)
T ss_pred cceeeccCCcceeEEEEecCccc--------------c---eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCcc
Confidence 35667788899999888754310 0 11222 3778999999998888 567889999886541
Q ss_pred CCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE-----EEeecCccceEE
Q 021484 121 GPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV-----RLMVGDRHVVNQ 195 (312)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~-----~~~~~~~~~v~~ 195 (312)
....++...... ..-.+.+| +.....+|++..||.+.|||++..... .+-..|.+.+..
T Consensus 192 --------------ey~~~~~~a~t~-D~gF~~S~-s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~ 255 (344)
T KOG4532|consen 192 --------------EYIENIYEAPTS-DHGFYNSF-SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRV 255 (344)
T ss_pred --------------ceeeeeEecccC-CCceeeee-ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEE
Confidence 022232222221 12467778 888899999999999999998864332 223468899999
Q ss_pred EEEcCCCCe--EEEEeCCCcEEEccCCCCC
Q 021484 196 LEPHPHIPM--FATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 196 ~~~~p~~~~--l~t~~~d~~i~iwd~~~~~ 223 (312)
+.|+|-|.. |+..-.-+.+.+-|+++..
T Consensus 256 c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 256 CRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred EEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 999997765 3333345788999998865
No 285
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.74 E-value=1.6e-06 Score=72.12 Aligned_cols=145 Identities=12% Similarity=0.102 Sum_probs=108.0
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCC-eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDE-YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
-+|+.+|.-..+..++ +-++.|..|| .+-|||.+++++. .+ ...-+.|.++..+++|++++.
T Consensus 356 v~~~~~VrY~r~~~~~-e~~vigt~dgD~l~iyd~~~~e~k---------------r~-e~~lg~I~av~vs~dGK~~vv 418 (668)
T COG4946 356 VGKKGGVRYRRIQVDP-EGDVIGTNDGDKLGIYDKDGGEVK---------------RI-EKDLGNIEAVKVSPDGKKVVV 418 (668)
T ss_pred cCCCCceEEEEEccCC-cceEEeccCCceEEEEecCCceEE---------------Ee-eCCccceEEEEEcCCCcEEEE
Confidence 4688888888888877 6889999999 8999999988632 11 344578999999999998888
Q ss_pred ec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc----eEEEEeccCC
Q 021484 106 YN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG----HLFIWKKKGG 180 (312)
Q Consensus 106 ~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg----~v~iwd~~~~ 180 (312)
+. ...+.+.|+.++ .....-+... .-|+...| +|+++++|-+--+| .|+++|+..+
T Consensus 419 aNdr~el~vididng----------------nv~~idkS~~--~lItdf~~-~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 419 ANDRFELWVIDIDNG----------------NVRLIDKSEY--GLITDFDW-HPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EcCceEEEEEEecCC----------------CeeEeccccc--ceeEEEEE-cCCceeEEEecCcceeeeeEEEEecCCC
Confidence 75 778999999987 3322222223 34999999 99999999876655 6999999987
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEE
Q 021484 181 KLVRLMVGDRHVVNQLEPHPHIPMFATC 208 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~ 208 (312)
+....- ...+.=.+-+|.|++++|.--
T Consensus 480 Kiy~vT-T~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 480 KIYDVT-TPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred eEEEec-CCcccccCcccCCCCcEEEEE
Confidence 765432 233333567899999985544
No 286
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=7.7e-07 Score=72.29 Aligned_cols=92 Identities=8% Similarity=0.131 Sum_probs=69.7
Q ss_pred eeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEE
Q 021484 13 RLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHIT 92 (312)
Q Consensus 13 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 92 (312)
..+...+++.....|+|...|.+++|+|...-++..++.+.+|+|.|+++..++ ... ..+ ..++
T Consensus 176 ~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v--------------ssy-~a~-~~~w 239 (463)
T KOG1645|consen 176 QKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV--------------SSY-IAY-NQIW 239 (463)
T ss_pred EEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee--------------ehe-ecc-CCce
Confidence 334444555444447889999999999987448889999999999999987632 222 333 6799
Q ss_pred EEEEccCCC-eEEEe-cCCcEEEEEcCCCc
Q 021484 93 GLAYSNTSE-LLISY-NDELVYLFEKNMGL 120 (312)
Q Consensus 93 ~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~ 120 (312)
+++|..+.. ++.+| ..|.|.+||++...
T Consensus 240 SC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 240 SCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 999999886 66666 59999999998764
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.65 E-value=2.3e-07 Score=80.88 Aligned_cols=204 Identities=12% Similarity=0.156 Sum_probs=134.4
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC---eEEEe
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE---LLISY 106 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~l~s~ 106 (312)
..++.++..+|.| +-++.++.-| +.+-|+...- . .+..+..-..-.+....|+|... .+++.
T Consensus 24 ~~~~~a~si~p~g-rdi~lAsr~g-l~i~dld~p~--------~-----ppr~l~h~tpw~vad~qws~h~a~~~wiVst 88 (1081)
T KOG0309|consen 24 DGGFNAVSINPSG-RDIVLASRQG-LYIIDLDDPF--------T-----PPRWLHHITPWQVADVQWSPHPAKPYWIVST 88 (1081)
T ss_pred cCcccceeecccc-chhhhhhhcC-eEEEeccCCC--------C-----CceeeeccCcchhcceecccCCCCceeEEec
Confidence 3468899999998 6777777655 4456765332 0 11111111234466788888763 55666
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-eEEE
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-LVRL 185 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~~~~ 185 (312)
+...-.+|++.... ....-..+.+|... ++.+.|.......+++++-|..+..||+++.. ++..
T Consensus 89 s~qkaiiwnlA~ss-------------~~aIef~lhghsra--itd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys 153 (1081)
T KOG0309|consen 89 SNQKAIIWNLAKSS-------------SNAIEFVLHGHSRA--ITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYS 153 (1081)
T ss_pred CcchhhhhhhhcCC-------------ccceEEEEecCccc--eeccccCCCCCcceeeccccccceeeeccCCCcceee
Confidence 77777889885431 00222344566644 99999954456789999999999999998754 4444
Q ss_pred eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 186 MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
+..-......|+|+--...+.+.+..+.|++||++.+. +..+.+|...+........-...+++.+.|++++.|+...
T Consensus 154 ~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 154 TSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred eecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 44333456789998877776666778899999998765 3555555555533332222345788999999999998654
No 288
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.64 E-value=7.4e-05 Score=62.14 Aligned_cols=74 Identities=9% Similarity=0.024 Sum_probs=50.5
Q ss_pred EcCCCCcEEEEEe---------CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--
Q 021484 38 IDPRNPNYFAVGG---------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-- 106 (312)
Q Consensus 38 ~~p~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-- 106 (312)
++|++..++++.+ .+..|.+||..+.+....+..+..-+.. .......++++|+|++|...
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~--------~~~~~~~~~ls~dgk~l~V~n~ 124 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL--------VGTYPWMTSLTPDNKTLLFYQF 124 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh--------ccCccceEEECCCCCEEEEecC
Confidence 9999955555556 6899999999999865443322110000 02233478999999977654
Q ss_pred c-CCcEEEEEcCCC
Q 021484 107 N-DELVYLFEKNMG 119 (312)
Q Consensus 107 ~-d~~i~iwd~~~~ 119 (312)
. +..|.+.|+.++
T Consensus 125 ~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 125 SPSPAVGVVDLEGK 138 (352)
T ss_pred CCCCEEEEEECCCC
Confidence 4 889999999887
No 289
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.62 E-value=1.3e-05 Score=64.15 Aligned_cols=189 Identities=11% Similarity=0.054 Sum_probs=116.6
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEc-cCCCeEEEecCCcEEE
Q 021484 35 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTSELLISYNDELVYL 113 (312)
Q Consensus 35 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~s~~d~~i~i 113 (312)
+++|.+..+.++.+-...+.|..|+..+++.. . . . ......+++. +++.++++.. +.+.+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~--------------~-~-~--~~~~~G~~~~~~~g~l~v~~~-~~~~~ 64 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE--------------V-I-D--LPGPNGMAFDRPDGRLYVADS-GGIAV 64 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE--------------E-E-E--SSSEEEEEEECTTSEEEEEET-TCEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE--------------E-E-e--cCCCceEEEEccCCEEEEEEc-CceEE
Confidence 67899844378888888999999999887621 1 1 1 1126677887 6665555554 45566
Q ss_pred EEcCCCcCCCCCcCCcccccCCCCCceEec--cc-CCceeeEEEEecCCCCEEEEeccC--------ceEEEEeccCCee
Q 021484 114 FEKNMGLGPSPLSLSPEDLQKREEPQVYSG--HR-NSQTVKGVNFFGPNDEYVMSGSDC--------GHLFIWKKKGGKL 182 (312)
Q Consensus 114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~v~~~s~~~~~l~~~~~d--------g~v~iwd~~~~~~ 182 (312)
+|..++ +....... .. .......+++ +++|++.++.... |.|..++.. ++.
T Consensus 65 ~d~~~g----------------~~~~~~~~~~~~~~~~~~ND~~v-d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~ 126 (246)
T PF08450_consen 65 VDPDTG----------------KVTVLADLPDGGVPFNRPNDVAV-DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV 126 (246)
T ss_dssp EETTTT----------------EEEEEEEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE
T ss_pred EecCCC----------------cEEEEeeccCCCcccCCCceEEE-cCCCCEEEEecCCCccccccccceEEECCC-CeE
Confidence 688775 22222222 11 2234889998 9999977765543 668888877 554
Q ss_pred EEEeecCccceEEEEEcCCCCeEE-EEeCCCcEEEccCCCCCC--------CCCCCChhhhhhhhccCCCCceeEEecCC
Q 021484 183 VRLMVGDRHVVNQLEPHPHIPMFA-TCGIEKTVKLWAPMPTDF--------PPLPDNAEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 183 ~~~~~~~~~~v~~~~~~p~~~~l~-t~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
..... .-...+.++|+|+++.|. +-+..+.|..+++..... ..+.... ....-.....++++.++.-..
T Consensus 127 ~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 127 TVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-GYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp EEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-CEEEEEEEBTTS-EEEEEETT
T ss_pred EEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-cCCCcceEcCCCCEEEEEcCC
Confidence 43333 345678999999999765 556788899998853321 1111111 111222345577888887788
Q ss_pred ceEEEEEec
Q 021484 254 VIMHVLRLQ 262 (312)
Q Consensus 254 ~~i~i~~~~ 262 (312)
+.|.+++-+
T Consensus 205 ~~I~~~~p~ 213 (246)
T PF08450_consen 205 GRIVVFDPD 213 (246)
T ss_dssp TEEEEEETT
T ss_pred CEEEEECCC
Confidence 888888754
No 290
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.59 E-value=1.3e-07 Score=51.96 Aligned_cols=38 Identities=24% Similarity=0.688 Sum_probs=34.8
Q ss_pred CCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEe
Q 021484 136 EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 176 (312)
Q Consensus 136 ~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd 176 (312)
+++..+.+|... |.+++| +|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~--i~~i~~-~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSS--INSIAW-SPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSS--EEEEEE-ETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCc--EEEEEE-ecccccceeeCCCCEEEEEC
Confidence 466788999977 999999 89999999999999999997
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.57 E-value=3.6e-06 Score=66.33 Aligned_cols=229 Identities=15% Similarity=0.217 Sum_probs=130.8
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccc----cc--cCCCccEEEEEEccCC--
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRH----LI--GKNNIHITGLAYSNTS-- 100 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~i~~~~~~~~~-- 100 (312)
....|+++.|...| .++++|...|.|.+|.-.... -.+.. -...|.... .+ ..-...|..+.|..++
T Consensus 25 ead~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~-~ceyk---f~teFQshe~EFDYLkSleieEKin~I~w~~~t~r 99 (460)
T COG5170 25 EADKITAVEFDETG-LYLATGDKGGRVVLFEREKSY-GCEYK---FFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred ccceeeEEEecccc-ceEeecCCCceEEEeeccccc-ccchh---hhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence 35579999999998 899999999999999866433 00000 000010000 00 0114567888887665
Q ss_pred -CeEEEecCCcEEEEEcCCCc------------------CCCC--CcCCccc------ccCCCCCceE-ecccCCceeeE
Q 021484 101 -ELLISYNDELVYLFEKNMGL------------------GPSP--LSLSPED------LQKREEPQVY-SGHRNSQTVKG 152 (312)
Q Consensus 101 -~~l~s~~d~~i~iwd~~~~~------------------~~~~--~~~~~~~------~~~~~~~~~~-~~~~~~~~v~~ 152 (312)
++|+++.|.+|++|.+.... ++.. .++.... +...++.+.+ ..|.. .+.+
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y--hiNS 177 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY--HINS 177 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee--Eeee
Confidence 38888899999999986541 1100 0000000 0000111222 23332 3889
Q ss_pred EEEecCCCCEEEEeccCceEEEEeccCCe---eEEEeecCc-----cceEEEEEcCCCC-eEEEEeCCCcEEEccCCCCC
Q 021484 153 VNFFGPNDEYVMSGSDCGHLFIWKKKGGK---LVRLMVGDR-----HVVNQLEPHPHIP-MFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 153 v~~~s~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~-----~~v~~~~~~p~~~-~l~t~~~d~~i~iwd~~~~~ 223 (312)
++| +.+.+.++++ .|=.|.+|++.-.. .+..++.|. .-|++..|+|... .+.-.+..|.|++-|++...
T Consensus 178 iS~-NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 178 ISF-NSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred eee-cCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh
Confidence 998 7777777665 57889999876322 233344443 4688999999754 46666778999999998432
Q ss_pred C-----C----CCCCC----hhhh---hhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021484 224 F-----P----PLPDN----AEKI---MKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 224 ~-----~----~~~~~----~~~~---~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
+ . ++.+. -..+ +....++++++++++ ..=.++++||++....+
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls-RdyltvkiwDvnm~k~p 314 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS-RDYLTVKIWDVNMAKNP 314 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE-eccceEEEEecccccCC
Confidence 1 1 11110 0111 233334445555543 33468999998765443
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=7.2e-07 Score=75.49 Aligned_cols=198 Identities=14% Similarity=0.131 Sum_probs=123.2
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 106 (312)
.|+.+|.++.|-.+. +.+++ -||.|.+||.--+++...+.. .++ .+..+.|.++. +-+..++++ +
T Consensus 782 aHkk~i~~igfL~~l-r~i~S--cD~giHlWDPFigr~Laq~~d-------apk---~~a~~~ikcl~-nv~~~iliAgc 847 (1034)
T KOG4190|consen 782 AHKKPIHDIGFLADL-RSIAS--CDGGIHLWDPFIGRLLAQMED-------APK---EGAGGNIKCLE-NVDRHILIAGC 847 (1034)
T ss_pred hccCcccceeeeecc-ceeee--ccCcceeecccccchhHhhhc-------Ccc---cCCCceeEecc-cCcchheeeec
Confidence 389999999998876 55554 589999999877663221000 000 11223343332 112334444 4
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc--cCC-ceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021484 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH--RNS-QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
+ ..+|+++|.+.. .-...++.. ..+ ..+.+++. .+.|++++++-..|.|.+.|.++|+.
T Consensus 848 saeSTVKl~DaRsc----------------e~~~E~kVcna~~Pna~~R~iaV-a~~GN~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 848 SAESTVKLFDARSC----------------EWTCELKVCNAPGPNALTRAIAV-ADKGNKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred cchhhheeeecccc----------------cceeeEEeccCCCCchheeEEEe-ccCcchhhHHhcCCcEEEEecCCCce
Confidence 4 899999999876 222223221 111 23888988 89999999999999999999999999
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE-ccCCCCCC-CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL-WAPMPTDF-PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~i-wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
+..++.-......++ .|..+.++....|.++.+ |..-.+.. ........+. .....-+..+++......+.++.
T Consensus 911 INswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepa---hflqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 911 INSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA---HFLQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred eccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch---hhhhccCceeEEeccCcEEEEEe
Confidence 887764433333333 466677888788889988 87555432 2111111111 11122345788888888888885
No 293
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.54 E-value=6.5e-07 Score=68.64 Aligned_cols=209 Identities=13% Similarity=0.084 Sum_probs=118.0
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCc
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL 110 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~ 110 (312)
.|+.+.++-+ ..|+++..++.+.......+.+...++-...+..+... ..|.++-..-+.+--+.-++++ .||.
T Consensus 38 ~~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~---a~~sep~p~~~~s~~~t~V~~~~~dg~ 112 (319)
T KOG4714|consen 38 KLSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVL---AKNSEIDPNDACTMTDNRVCIGYADGS 112 (319)
T ss_pred EEEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeee---eccCCCCCcccccccCCceEecCCCce
Confidence 3667777764 57888888888877776666554333222222211111 1222222222223334456664 6999
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-----cCceEEEEeccCCeeEEE
Q 021484 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-----DCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-----~dg~v~iwd~~~~~~~~~ 185 (312)
+.+++.+... ............ -.+.++ -..++++.++. .-+..+.|+++..+.+..
T Consensus 113 ~~v~s~~~~~---------------~~~~~i~~~~~~--~as~~~-~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~ 174 (319)
T KOG4714|consen 113 LAVFSTDKDL---------------ALMSRIPSIHSG--SASRKI-CRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP 174 (319)
T ss_pred EEEEechHHH---------------hhhhhccccccc--ccccce-eecccEEecCCcceEeeccceeeecccccccccc
Confidence 9999986531 111111111111 112222 12344444332 233455666654433222
Q ss_pred eecCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC--CCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 186 MVGDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD--FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
-......|.+++-+|..+. ++.|+.||.+.+||.+... ...+..|..++....+-..++..|++.+.||.+-.||-.
T Consensus 175 ~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 175 SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 1112235899999997665 7777899999999998764 233455777776666555588999999999999999855
Q ss_pred c
Q 021484 263 R 263 (312)
Q Consensus 263 ~ 263 (312)
.
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 3
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.54 E-value=3.8e-05 Score=61.73 Aligned_cols=204 Identities=14% Similarity=0.156 Sum_probs=128.0
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCe-EEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEY-ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 107 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~- 107 (312)
+.+...++.+|..+..++.+-.-|+ ..+||..+++.......+ .-.++ .+| -.|+++|++|.+..
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~------~gRHF-yGH------g~fs~dG~~LytTEn 70 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP------PGRHF-YGH------GVFSPDGRLLYTTEN 70 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC------CCCEE-ecC------EEEcCCCCEEEEecc
Confidence 3456788999976678888877665 677999988754322110 11111 344 37999999888762
Q ss_pred -----CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc--------------
Q 021484 108 -----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-------------- 168 (312)
Q Consensus 108 -----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-------------- 168 (312)
.|.|-|||..... +.+..+..+.-. ...+.+ .|+++.|+.+..
T Consensus 71 d~~~g~G~IgVyd~~~~~---------------~ri~E~~s~GIG--PHel~l-~pDG~tLvVANGGI~Thpd~GR~kLN 132 (305)
T PF07433_consen 71 DYETGRGVIGVYDAARGY---------------RRIGEFPSHGIG--PHELLL-MPDGETLVVANGGIETHPDSGRAKLN 132 (305)
T ss_pred ccCCCcEEEEEEECcCCc---------------EEEeEecCCCcC--hhhEEE-cCCCCEEEEEcCCCccCcccCceecC
Confidence 4679999998321 566667766544 667777 899987777642
Q ss_pred ----CceEEEEeccCCeeEEEee----cCccceEEEEEcCCCCeEEEEeCCCc-------EEEccCCCCCCCCCCCChh-
Q 021484 169 ----CGHLFIWKKKGGKLVRLMV----GDRHVVNQLEPHPHIPMFATCGIEKT-------VKLWAPMPTDFPPLPDNAE- 232 (312)
Q Consensus 169 ----dg~v~iwd~~~~~~~~~~~----~~~~~v~~~~~~p~~~~l~t~~~d~~-------i~iwd~~~~~~~~~~~~~~- 232 (312)
+..+...|..+|+.+.+.. .|.-.|..+++.++|..++..-..|. |-+++.... +..+.....
T Consensus 133 l~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~ 211 (305)
T PF07433_consen 133 LDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQ 211 (305)
T ss_pred hhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHH
Confidence 3456677778888877643 36678999999999887766654432 444443321 111111111
Q ss_pred -----hhhhhhccCCCCc-eeEEecCCceEEEEEecccC
Q 021484 233 -----KIMKANKQGREDH-SRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 233 -----~~~~~~~~~~~~~-~l~s~~~d~~i~i~~~~~~~ 265 (312)
.-+.......++. ..+|....+.+.+||..+..
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 1122233444554 44666677899999977663
No 295
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.52 E-value=1.6e-05 Score=74.83 Aligned_cols=211 Identities=11% Similarity=0.083 Sum_probs=130.6
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEE----EccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVY----DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
...|.++.|-++. ..++.+..+|.|.+. +..+..+. +. ..-...|.+++||||+++|+.
T Consensus 75 ~~~ivs~~yl~d~-~~l~~~~~~Gdi~~~~~~~~~~~~~~E------------~V----G~vd~GI~a~~WSPD~Ella~ 137 (928)
T PF04762_consen 75 NDKIVSFQYLADS-ESLCIALASGDIILVREDPDPDEDEIE------------IV----GSVDSGILAASWSPDEELLAL 137 (928)
T ss_pred CCcEEEEEeccCC-CcEEEEECCceEEEEEccCCCCCceeE------------EE----EEEcCcEEEEEECCCcCEEEE
Confidence 4679999999988 688888899999999 54444311 11 233678999999999997776
Q ss_pred e-cCCcEEEEEcCC----Cc-----------------CCCCCcCCcccccCC-----CCC------ceEecccCCceeeE
Q 021484 106 Y-NDELVYLFEKNM----GL-----------------GPSPLSLSPEDLQKR-----EEP------QVYSGHRNSQTVKG 152 (312)
Q Consensus 106 ~-~d~~i~iwd~~~----~~-----------------~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~v~~ 152 (312)
. .++++.+.+..= .. +....+++...-+.. .+. ..+. .... -..
T Consensus 138 vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~--~~~ 214 (928)
T PF04762_consen 138 VTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG--RVR 214 (928)
T ss_pred EeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC--ceE
Confidence 4 577776654320 00 111122222111110 000 0111 2222 568
Q ss_pred EEEecCCCCEEEEecc------CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeC---CCcEEEccCCCCC
Q 021484 153 VNFFGPNDEYVMSGSD------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGI---EKTVKLWAPMPTD 223 (312)
Q Consensus 153 v~~~s~~~~~l~~~~~------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~---d~~i~iwd~~~~~ 223 (312)
++| -.||+|+|+.+- -..++||+.. |+...+-..-.+--..++|.|.|+++|+.-. ...|.+|.-++.+
T Consensus 215 ISW-RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr 292 (928)
T PF04762_consen 215 ISW-RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR 292 (928)
T ss_pred EEE-CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE
Confidence 899 899999998764 2579999976 6654443322233346899999999998863 3567888866654
Q ss_pred CCC--CC-CChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 224 FPP--LP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 224 ~~~--~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
... ++ ......+....|..++..|+..-.|. +++|...+
T Consensus 293 hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 293 HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeC
Confidence 322 22 12222335556888888887766555 99997654
No 296
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.49 E-value=3.8e-05 Score=71.11 Aligned_cols=213 Identities=10% Similarity=0.097 Sum_probs=125.5
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021484 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 109 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~ 109 (312)
..|.++.|..+. +.++.+...|.|.+-|..+..+. +. ..-...|.+++|+|+++.++-. ..+
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~e------------iv----g~vd~GI~aaswS~Dee~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELE------------IV----GNVDNGISAASWSPDEELLALITGRQ 131 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEccccccee------------ee----eeccCceEEEeecCCCcEEEEEeCCc
Confidence 579999999887 78888888999999988876532 11 3336789999999999977775 455
Q ss_pred cEEEEEc----CCCc-----------------CCCCCcCCcccc--cCCCCCceEe--c-ccCCceeeEEEEecCCCCEE
Q 021484 110 LVYLFEK----NMGL-----------------GPSPLSLSPEDL--QKREEPQVYS--G-HRNSQTVKGVNFFGPNDEYV 163 (312)
Q Consensus 110 ~i~iwd~----~~~~-----------------~~~~~~~~~~~~--~~~~~~~~~~--~-~~~~~~v~~v~~~s~~~~~l 163 (312)
++.+-+- -... +....++..... ...+.....+ + ......-++++| --+|+++
T Consensus 132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsW-RgDg~~f 210 (1265)
T KOG1920|consen 132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISW-RGDGEYF 210 (1265)
T ss_pred EEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEE-ccCCcEE
Confidence 5554332 1100 000001110000 0000000000 0 000011356888 8899999
Q ss_pred EE-----eccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe---CCCcEEEccCCCCCCC----CCCCCh
Q 021484 164 MS-----GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG---IEKTVKLWAPMPTDFP----PLPDNA 231 (312)
Q Consensus 164 ~~-----~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~~~~----~~~~~~ 231 (312)
++ ....+.|+|||.. |..-..-..-.+-=.+++|-|.|..+++-. .|+.|.+|..++.+.. .++...
T Consensus 211 AVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de 289 (1265)
T KOG1920|consen 211 AVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDE 289 (1265)
T ss_pred EEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccc
Confidence 88 3334899999977 443222111122224799999999988764 5668999997765432 222222
Q ss_pred hhhhhhhccCCCCceeEE---ecCCceEEEEEecc
Q 021484 232 EKIMKANKQGREDHSRIT---LTPDVIMHVLRLQR 263 (312)
Q Consensus 232 ~~~~~~~~~~~~~~~l~s---~~~d~~i~i~~~~~ 263 (312)
.. +....|..++..|+. ......+++|-+.+
T Consensus 290 ~~-ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 290 KE-VEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred cc-hheeeecCCCCceeeeecccccceEEEEEecC
Confidence 22 455567777777776 45556699997654
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.48 E-value=8.3e-05 Score=59.85 Aligned_cols=179 Identities=13% Similarity=0.175 Sum_probs=108.3
Q ss_pred eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEE-----eCCCeEEEEEcc-CCeecCCCCCCCCc
Q 021484 2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVG-----GSDEYARVYDIR-KCHWYSPISSDTPV 75 (312)
Q Consensus 2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~-----~~dg~i~iwd~~-~~~~~~~~~~~~~~ 75 (312)
.+||.++.+....+.. +++..+-| ...|+|+| ++|++. ...|.|-|||.. +.+ .+
T Consensus 31 ~v~D~~~g~~~~~~~a---~~gRHFyG------Hg~fs~dG-~~LytTEnd~~~g~G~IgVyd~~~~~~---------ri 91 (305)
T PF07433_consen 31 LVFDCRTGQLLQRLWA---PPGRHFYG------HGVFSPDG-RLLYTTENDYETGRGVIGVYDAARGYR---------RI 91 (305)
T ss_pred EEEEcCCCceeeEEcC---CCCCEEec------CEEEcCCC-CEEEEeccccCCCcEEEEEEECcCCcE---------EE
Confidence 4788887764444433 33333333 36799999 677665 345899999998 333 12
Q ss_pred ccccccccccCCCccEEEEEEccCCCeEEEecCCc-------------------EEEEEcCCCcCCCCCcCCcccccCCC
Q 021484 76 DTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL-------------------VYLFEKNMGLGPSPLSLSPEDLQKRE 136 (312)
Q Consensus 76 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~-------------------i~iwd~~~~~~~~~~~~~~~~~~~~~ 136 (312)
.+| ..|.-....+.+.|+|+.|+.+..|. +.+.|..++ +
T Consensus 92 ~E~------~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG----------------~ 149 (305)
T PF07433_consen 92 GEF------PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG----------------A 149 (305)
T ss_pred eEe------cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC----------------c
Confidence 222 44455566788999997666654332 222333333 4
Q ss_pred CCceEe----cccCCceeeEEEEecCCCCEEEEeccCce-------EEEEeccCCeeEEEee-------cCccceEEEEE
Q 021484 137 EPQVYS----GHRNSQTVKGVNFFGPNDEYVMSGSDCGH-------LFIWKKKGGKLVRLMV-------GDRHVVNQLEP 198 (312)
Q Consensus 137 ~~~~~~----~~~~~~~v~~v~~~s~~~~~l~~~~~dg~-------v~iwd~~~~~~~~~~~-------~~~~~v~~~~~ 198 (312)
.+.... -|... +..+++ ..+|..++..-..|. |.+++. ++.+..+. .-.+.+-+|++
T Consensus 150 ll~q~~Lp~~~~~lS--iRHLa~-~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~ 224 (305)
T PF07433_consen 150 LLEQVELPPDLHQLS--IRHLAV-DGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAA 224 (305)
T ss_pred eeeeeecCccccccc--eeeEEe-cCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEE
Confidence 444322 24433 889998 888877666544332 333332 33233332 22357889999
Q ss_pred cCCCCeEEEEe-CCCcEEEccCCCCCCCC
Q 021484 199 HPHIPMFATCG-IEKTVKLWAPMPTDFPP 226 (312)
Q Consensus 199 ~p~~~~l~t~~-~d~~i~iwd~~~~~~~~ 226 (312)
++++..+++.+ .-+.+.+||..++.+..
T Consensus 225 ~~~g~~ia~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 225 DRDGRLIAVTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred eCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence 99999865555 77899999999988643
No 298
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.45 E-value=2.7e-05 Score=61.96 Aligned_cols=180 Identities=11% Similarity=0.070 Sum_probs=106.9
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 123 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 123 (312)
..+++++.++.|..||..+++.......+.++ ... ....++.+++...++.++.+|..++
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~------------~~~----~~~~~~~v~v~~~~~~l~~~d~~tG---- 96 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDLPGPI------------SGA----PVVDGGRVYVGTSDGSLYALDAKTG---- 96 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEECSSCG------------GSG----EEEETTEEEEEETTSEEEEEETTTS----
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeeccccc------------cce----eeecccccccccceeeeEecccCCc----
Confidence 46677789999999999999854332211111 111 1223445555567889999998888
Q ss_pred CCcCCcccccCCCCCceE-ecccCC---ceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccc-------
Q 021484 124 PLSLSPEDLQKREEPQVY-SGHRNS---QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV------- 192 (312)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~-~~~~~~---~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------- 192 (312)
+..... ...... .......+ .+..++++..++.|..+|+++|+.+-........
T Consensus 97 ------------~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~ 161 (238)
T PF13360_consen 97 ------------KVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISS 161 (238)
T ss_dssp ------------CEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred ------------ceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceee
Confidence 555552 322110 01222332 4788888888999999999999998777654322
Q ss_pred ---e-EEEEEcCCCCeEEEEeCCCc-EEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 193 ---V-NQLEPHPHIPMFATCGIEKT-VKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 193 ---v-~~~~~~p~~~~l~t~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
+ ..+.+. ++ .+..++.++. +.+ |+.+++.. ........... ...++..++..+.++.+..||+.++
T Consensus 162 ~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~-w~~~~~~~~~~--~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 162 FSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKL-WSKPISGIYSL--PSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEE-EEECSS-ECEC--EECCCTEEEEEETTTEEEEEETTTT
T ss_pred ecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEE-EEecCCCccCC--ceeeCCEEEEEeCCCEEEEEECCCC
Confidence 1 223332 34 6666666775 666 98888632 11011111110 2234566666668999999998776
No 299
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.45 E-value=3.5e-06 Score=72.40 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=82.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 111 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i 111 (312)
....+.++|++ +.+++ +.||.-.+|.....+ ....+.....+|.+.+++.+--....|
T Consensus 34 ~p~~ls~npng-r~v~V-~g~geY~iyt~~~~r--------------------~k~~G~g~~~vw~~~n~yAv~~~~~~I 91 (443)
T PF04053_consen 34 YPQSLSHNPNG-RFVLV-CGDGEYEIYTALAWR--------------------NKAFGSGLSFVWSSRNRYAVLESSSTI 91 (443)
T ss_dssp --SEEEE-TTS-SEEEE-EETTEEEEEETTTTE--------------------EEEEEE-SEEEE-TSSEEEEE-TTS-E
T ss_pred CCeeEEECCCC-CEEEE-EcCCEEEEEEccCCc--------------------ccccCceeEEEEecCccEEEEECCCeE
Confidence 46899999998 67766 567888888854333 111344557889996665554568889
Q ss_pred EEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCcc
Q 021484 112 YLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH 191 (312)
Q Consensus 112 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 191 (312)
.++.--+. ...+.++... . +..+ | . |..|...+.+ .|.+||+.+++.+..+...
T Consensus 92 ~I~kn~~~----------------~~~k~i~~~~-~--~~~I-f-~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~-- 145 (443)
T PF04053_consen 92 KIYKNFKN----------------EVVKSIKLPF-S--VEKI-F-G--GNLLGVKSSD-FICFYDWETGKLIRRIDVS-- 145 (443)
T ss_dssp EEEETTEE-----------------TT-----SS----EEEE-E----SSSEEEEETT-EEEEE-TTT--EEEEESS---
T ss_pred EEEEcCcc----------------ccceEEcCCc-c--cceE-E-c--CcEEEEECCC-CEEEEEhhHcceeeEEecC--
Confidence 99743222 2323333221 1 4555 3 3 7777776544 8999999999999988733
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484 192 VVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 192 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
+|..+.|++++.+++..+. .++.+++....
T Consensus 146 ~vk~V~Ws~~g~~val~t~-~~i~il~~~~~ 175 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTK-DSIYILKYNLE 175 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred CCcEEEEECCCCEEEEEeC-CeEEEEEecch
Confidence 4899999999999988874 47777765433
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.43 E-value=0.00016 Score=56.76 Aligned_cols=204 Identities=12% Similarity=0.162 Sum_probs=114.4
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEE
Q 021484 36 IVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLF 114 (312)
Q Consensus 36 ~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iw 114 (312)
++.+++| ++||. -.|..|.|-..+..- ...+.. | .+.+.....-.-++|+||+.+||.+ +.|+|++|
T Consensus 3 ~~~~~~G-k~lAi-~qd~~iEiRsa~Ddf-------~si~~k-c--qVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vf 70 (282)
T PF15492_consen 3 LALSSDG-KLLAI-LQDQCIEIRSAKDDF-------SSIIGK-C--QVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVF 70 (282)
T ss_pred eeecCCC-cEEEE-EeccEEEEEeccCCc-------hheeEE-E--ecCCCCCchheEEEECCCCcEEEEEcCCCeEEEE
Confidence 4556777 55555 466777765554321 001111 1 1223334456789999999999987 69999999
Q ss_pred EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-----CCEEEEeccCceEEEEeccCC-----eeEE
Q 021484 115 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-----DEYVMSGSDCGHLFIWKKKGG-----KLVR 184 (312)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-----~~~l~~~~~dg~v~iwd~~~~-----~~~~ 184 (312)
|+..... -.+ .+...+.+.. ...|..+.|..+. ...|++-..+|.++=|-+..+ +...
T Consensus 71 dl~g~~l---f~I--------~p~~~~~~d~-~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~h 138 (282)
T PF15492_consen 71 DLMGSEL---FVI--------PPAMSFPGDL-SDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENH 138 (282)
T ss_pred eccccee---EEc--------CcccccCCcc-ccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeE
Confidence 9975310 000 1111111111 1236777773332 235677778888887765322 2222
Q ss_pred Ee--ec-CccceEEEEEcCCCCeEEEEe-CCC----------cEEEccCCCCCCC---------------------CCC-
Q 021484 185 LM--VG-DRHVVNQLEPHPHIPMFATCG-IEK----------TVKLWAPMPTDFP---------------------PLP- 228 (312)
Q Consensus 185 ~~--~~-~~~~v~~~~~~p~~~~l~t~~-~d~----------~i~iwd~~~~~~~---------------------~~~- 228 (312)
.+ .. +...|.++.++|..++|+.|| ... -+.-|.+-.+... .+.
T Consensus 139 sfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~ 218 (282)
T PF15492_consen 139 SFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS 218 (282)
T ss_pred EEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc
Confidence 33 22 356899999999999876665 221 2455654322110 000
Q ss_pred --------CChhhhhhhhccCCCCceeEEecCCceEEEEEeccc
Q 021484 229 --------DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 229 --------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
.....+ -....++++..|++...+|.+.+|++..-
T Consensus 219 ~~~fs~~~~~~d~i-~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 219 FKFFSRQGQEQDGI-FKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred eeeeeccccCCCce-EEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 011222 22235678889999999999999987653
No 301
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.42 E-value=3e-05 Score=66.33 Aligned_cols=175 Identities=13% Similarity=0.066 Sum_probs=95.4
Q ss_pred CCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCce---eeEEEEecCCCCEEEEeccCceEEEEe
Q 021484 100 SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQT---VKGVNFFGPNDEYVMSGSDCGHLFIWK 176 (312)
Q Consensus 100 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~v~~~s~~~~~l~~~~~dg~v~iwd 176 (312)
+.+++...++.|+.||..++ +.+..+........ ..+... .+..++.+..+|.+..+|
T Consensus 146 ~~v~v~~~~g~l~a~d~~tG----------------~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald 206 (377)
T TIGR03300 146 GLVVVRTNDGRLTALDAATG----------------ERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALD 206 (377)
T ss_pred CEEEEECCCCeEEEEEcCCC----------------ceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEE
Confidence 34444456888999998877 44444332221100 011111 124677888899999999
Q ss_pred ccCCeeEEEeecCc--c-----ceEEEEEcC--CCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCcee
Q 021484 177 KKGGKLVRLMVGDR--H-----VVNQLEPHP--HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSR 247 (312)
Q Consensus 177 ~~~~~~~~~~~~~~--~-----~v~~~~~~p--~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (312)
.++|+.+-...... + ....+.-+| .+..++.++.+|.+..||+.+++..-...... .......+..+
T Consensus 207 ~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~~~~~~v 282 (377)
T TIGR03300 207 LQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS----YQGPAVDDNRL 282 (377)
T ss_pred ccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC----ccCceEeCCEE
Confidence 99998664432110 0 001111111 34567778889999999998876311100000 01111245677
Q ss_pred EEecCCceEEEEEecccCccceeE-e---------ecCCCccCCCCCCCeEEEeecCCCCC
Q 021484 248 ITLTPDVIMHVLRLQRRQTLAYRE-R---------RYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 248 ~s~~~d~~i~i~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
+.++.++.+..+|..+... .|.. . ......+...+.++.+++++..+++.
T Consensus 283 yv~~~~G~l~~~d~~tG~~-~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 283 YVTDADGVVVALDRRSGSE-LWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSF 342 (377)
T ss_pred EEECCCCeEEEEECCCCcE-EEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCE
Confidence 7788899999998765532 2221 0 01122333445667788888766643
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.41 E-value=0.00021 Score=57.25 Aligned_cols=167 Identities=14% Similarity=0.131 Sum_probs=101.9
Q ss_pred eecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCC--------CeEEEEEccCCeecCCCCCCCC
Q 021484 3 QFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSD--------EYARVYDIRKCHWYSPISSDTP 74 (312)
Q Consensus 3 ~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~ 74 (312)
++|+.+.+...+....... ......+++++.|+| ++.++.... |.|..++.. ++..
T Consensus 64 ~~d~~~g~~~~~~~~~~~~------~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~-------- 127 (246)
T PF08450_consen 64 VVDPDTGKVTVLADLPDGG------VPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKVT-------- 127 (246)
T ss_dssp EEETTTTEEEEEEEEETTC------SCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEE--------
T ss_pred EEecCCCcEEEEeeccCCC------cccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeEE--------
Confidence 4566665544444432111 024578999999999 677765433 456667766 4311
Q ss_pred cccccccccccCCCccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec-ccCCceee
Q 021484 75 VDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVK 151 (312)
Q Consensus 75 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~ 151 (312)
.. ...-.....|+|+|+++.|..+ ..+.|..|++...... ....+.+.. .......-
T Consensus 128 -------~~-~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 128 -------VV-ADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE------------LSNRRVFIDFPGGPGYPD 187 (246)
T ss_dssp -------EE-EEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC------------EEEEEEEEE-SSSSCEEE
T ss_pred -------EE-ecCcccccceEECCcchheeecccccceeEEEeccccccc------------eeeeeeEEEcCCCCcCCC
Confidence 11 1123456799999999865543 4888999998643100 001122211 11112367
Q ss_pred EEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEE-cCCCCeEEE
Q 021484 152 GVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP-HPHIPMFAT 207 (312)
Q Consensus 152 ~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~-~p~~~~l~t 207 (312)
.+++ +.+|++.++....+.|.+++.+ |+.+..+......+++++| -|+.+.|..
T Consensus 188 G~~v-D~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 188 GLAV-DSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEE-BTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEE
T ss_pred cceE-cCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEE
Confidence 8888 8899988888889999999988 8888888766568999999 466565433
No 303
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.41 E-value=9.1e-05 Score=63.42 Aligned_cols=213 Identities=8% Similarity=-0.016 Sum_probs=120.1
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 123 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 123 (312)
..+++++.+|.+..+|..+++.....+.... ... ..+. .++.+++.+.++.++.+|..++
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~------------~~~---~p~v-~~~~v~v~~~~g~l~ald~~tG---- 125 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDER------------LSG---GVGA-DGGLVFVGTEKGEVIALDAEDG---- 125 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCC------------ccc---ceEE-cCCEEEEEcCCCEEEEEECCCC----
Confidence 4788888899999999998885433221111 011 1122 1334455557999999999887
Q ss_pred CCcCCcccccCCCCCceEecccCCceeeE-EEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE-----EEE
Q 021484 124 PLSLSPEDLQKREEPQVYSGHRNSQTVKG-VNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-----QLE 197 (312)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-----~~~ 197 (312)
+.+....... . +.+ ... .+..++.++.+|.|+.+|.++|+.+-.+......+. ...
T Consensus 126 ------------~~~W~~~~~~-~--~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~ 187 (377)
T TIGR03300 126 ------------KELWRAKLSS-E--VLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPV 187 (377)
T ss_pred ------------cEeeeeccCc-e--eecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCE
Confidence 4443332211 1 211 111 245677788899999999999988766653322111 111
Q ss_pred EcCCCCeEEEEeCCCcEEEccCCCCCCC---CCCCC--hhhhhhh--hccCC--CCceeEEecCCceEEEEEecccCccc
Q 021484 198 PHPHIPMFATCGIEKTVKLWAPMPTDFP---PLPDN--AEKIMKA--NKQGR--EDHSRITLTPDVIMHVLRLQRRQTLA 268 (312)
Q Consensus 198 ~~p~~~~l~t~~~d~~i~iwd~~~~~~~---~~~~~--~~~~~~~--~~~~~--~~~~l~s~~~d~~i~i~~~~~~~~~~ 268 (312)
. .+..++.+..++.+..+|+++++.. .+... ....... ....+ .+..++..+.++.++.+|..++ ...
T Consensus 188 ~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG-~~~ 264 (377)
T TIGR03300 188 I--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG-RVL 264 (377)
T ss_pred E--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC-cEE
Confidence 1 1246677778899999998877531 11100 0000000 00111 3456777888899999998665 333
Q ss_pred eeEe-------ecCCCccCCCCCCCeEEEeecCCCC
Q 021484 269 YRER-------RYNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 269 ~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
|... ......+.....++.++.+|..+++
T Consensus 265 W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~ 300 (377)
T TIGR03300 265 WKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGS 300 (377)
T ss_pred EeeccCCccCceEeCCEEEEECCCCeEEEEECCCCc
Confidence 4311 1122333334566778888876664
No 304
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.40 E-value=1.1e-05 Score=69.07 Aligned_cols=73 Identities=12% Similarity=0.171 Sum_probs=58.5
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN- 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~- 107 (312)
.+..|.+++++|+. ..|+.|+.||+|.+||...+-- .+ ....-.++.++|+|+|.+++.++
T Consensus 258 L~s~v~~ca~sp~E-~kLvlGC~DgSiiLyD~~~~~t-----------~~------~ka~~~P~~iaWHp~gai~~V~s~ 319 (545)
T PF11768_consen 258 LPSQVICCARSPSE-DKLVLGCEDGSIILYDTTRGVT-----------LL------AKAEFIPTLIAWHPDGAIFVVGSE 319 (545)
T ss_pred cCCcceEEecCccc-ceEEEEecCCeEEEEEcCCCee-----------ee------eeecccceEEEEcCCCcEEEEEcC
Confidence 57789999999998 8999999999999999876531 00 11234467899999999888875
Q ss_pred CCcEEEEEcCCC
Q 021484 108 DELVYLFEKNMG 119 (312)
Q Consensus 108 d~~i~iwd~~~~ 119 (312)
.|.+.+||+.-.
T Consensus 320 qGelQ~FD~ALs 331 (545)
T PF11768_consen 320 QGELQCFDMALS 331 (545)
T ss_pred CceEEEEEeecC
Confidence 799999998643
No 305
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=6.7e-06 Score=67.98 Aligned_cols=206 Identities=14% Similarity=0.067 Sum_probs=139.1
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y 106 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~ 106 (312)
.|++.|+.+.-... +++.+++.||.++.|--..-.- .. -..+. ..|...|.+++.+-++.++.+ +
T Consensus 7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isG----------vE-fVKhF-raHL~~I~sl~~S~dg~L~~Sv~ 72 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISG----------VE-FVKHF-RAHLGVILSLAVSYDGWLFRSVE 72 (558)
T ss_pred cccceeeeEeeehh--heEEeeecchhhhhcCCCCccc----------ee-ehhhh-HHHHHHHHhhhccccceeEeecc
Confidence 38888888776654 6999999999999998653110 01 12222 567888999999999999998 4
Q ss_pred c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC---CEEEEeccCceEEEEeccCC--
Q 021484 107 N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---EYVMSGSDCGHLFIWKKKGG-- 180 (312)
Q Consensus 107 ~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~---~~l~~~~~dg~v~iwd~~~~-- 180 (312)
. |..++++|+.+- ..+..++...-++.+..+ . ++.. ..-++.-.+|.+.++|-...
T Consensus 73 d~Dhs~KvfDvEn~----------------DminmiKL~~lPg~a~wv-~-skGd~~s~IAVs~~~sg~i~VvD~~~d~~ 134 (558)
T KOG0882|consen 73 DPDHSVKVFDVENF----------------DMINMIKLVDLPGFAEWV-T-SKGDKISLIAVSLFKSGKIFVVDGFGDFC 134 (558)
T ss_pred CcccceeEEEeecc----------------chhhhcccccCCCceEEe-c-CCCCeeeeEEeecccCCCcEEECCcCCcC
Confidence 5 899999999875 232222211111112222 1 2221 22334456889999996543
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC------CC-CCCC--------CChhhhhhhhccCCCCc
Q 021484 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT------DF-PPLP--------DNAEKIMKANKQGREDH 245 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~------~~-~~~~--------~~~~~~~~~~~~~~~~~ 245 (312)
+....-.-|..+|..+.+.|.+..+++....|.|.-|..... .+ ..+. ...+.......+++++.
T Consensus 135 q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~ 214 (558)
T KOG0882|consen 135 QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA 214 (558)
T ss_pred ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC
Confidence 334444568999999999999999999999999999998741 01 0111 12233445556777888
Q ss_pred eeEEecCCceEEEEEecccC
Q 021484 246 SRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 246 ~l~s~~~d~~i~i~~~~~~~ 265 (312)
.+.+.++|..+++++++++.
T Consensus 215 qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 215 QISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred cccccCcccEEEEEEeccch
Confidence 99999999999999987763
No 306
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=2.2e-05 Score=69.46 Aligned_cols=181 Identities=13% Similarity=0.170 Sum_probs=116.4
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-C
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN-D 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~-d 108 (312)
...++|++++. ..|+-|+.+|.|++++.... +... ..|... ..+|+++++|+ |
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~----------------~~~~-~~~s~~------~~~Gey~asCS~D 92 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGN----------------PKTN-FDHSSS------ILEGEYVASCSDD 92 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCCc----------------cccc-cccccc------ccCCceEEEecCC
Confidence 45677888865 68999999999999997632 1111 233332 56789999985 9
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-----CCEEEEeccCceEEEEecc---CC
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-----DEYVMSGSDCGHLFIWKKK---GG 180 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-----~~~l~~~~~dg~v~iwd~~---~~ 180 (312)
|+|.|-.+.+. +....+.-+ .++.++++ +|+ .+.+++|+..| +.++.-+ ..
T Consensus 93 Gkv~I~sl~~~----------------~~~~~~df~---rpiksial-~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk 151 (846)
T KOG2066|consen 93 GKVVIGSLFTD----------------DEITQYDFK---RPIKSIAL-HPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK 151 (846)
T ss_pred CcEEEeeccCC----------------ccceeEecC---CcceeEEe-ccchhhhhhhheeecCcce-EEEehhhhhcCc
Confidence 99999988776 444444422 34889998 787 56789999988 7777632 22
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC-CCCCChhhh-----hhhhccCCCCceeEEecCCc
Q 021484 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKI-----MKANKQGREDHSRITLTPDV 254 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~l~s~~~d~ 254 (312)
..+ .+....++|.++.| .|+++|-++ |--|++||+..++.. .++.....+ ..-..|..+.+++ .+-..
T Consensus 152 ~~v-~l~~~eG~I~~i~W--~g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LV--IGW~d 225 (846)
T KOG2066|consen 152 DSV-VLSEGEGPIHSIKW--RGNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLV--IGWGD 225 (846)
T ss_pred cce-eeecCccceEEEEe--cCcEEEEec-CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEE--EecCC
Confidence 222 34455689999999 677887776 556899998877632 222111111 1122233443333 34455
Q ss_pred eEEEEEecc
Q 021484 255 IMHVLRLQR 263 (312)
Q Consensus 255 ~i~i~~~~~ 263 (312)
+|++..++.
T Consensus 226 ~v~i~~I~~ 234 (846)
T KOG2066|consen 226 SVKICSIKK 234 (846)
T ss_pred eEEEEEEec
Confidence 667777763
No 307
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.38 E-value=8.7e-08 Score=82.13 Aligned_cols=202 Identities=13% Similarity=0.188 Sum_probs=128.5
Q ss_pred cceEEEEEcCCCC-cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEEec-
Q 021484 31 IRLNAIVIDPRNP-NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLISYN- 107 (312)
Q Consensus 31 ~~v~~~~~~p~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s~~- 107 (312)
..+.|+++.-+.. .+++.|..+|.|-+-.++...- .......++....++++|++-. ..||+|-
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd-------------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagld 123 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD-------------SSAEVTPGYARPCTSLAWNELDTNHLAAGLD 123 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCccc-------------ccceecccccccccccccccccHHHHHhhhh
Confidence 3567777765432 5788899999999998875541 1223335677889999999854 5777762
Q ss_pred ----CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec-ccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-e
Q 021484 108 ----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG-HRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-K 181 (312)
Q Consensus 108 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~ 181 (312)
|..+.|||+.+... + + +....|.+ .... ..+++| -.+.+.+.+|.....++++|++.. .
T Consensus 124 khrnds~~~Iwdi~s~lt-v----P-------ke~~~fs~~~l~g--qns~cw-lrd~klvlaGm~sr~~~ifdlRqs~~ 188 (783)
T KOG1008|consen 124 KHRNDSSLKIWDINSLLT-V----P-------KESPLFSSSTLDG--QNSVCW-LRDTKLVLAGMTSRSVHIFDLRQSLD 188 (783)
T ss_pred hhcccCCccceecccccC-C----C-------ccccccccccccC--cccccc-ccCcchhhcccccchhhhhhhhhhhh
Confidence 66799999987621 0 0 11111222 2222 568888 688899999999999999999832 2
Q ss_pred eEEEeecCccceEEEEEcC-CCCeEEEEeCCCcEEEcc-CCCCC--CCCCCCC----hhhhhhhhccCCCCceeEEecCC
Q 021484 182 LVRLMVGDRHVVNQLEPHP-HIPMFATCGIEKTVKLWA-PMPTD--FPPLPDN----AEKIMKANKQGREDHSRITLTPD 253 (312)
Q Consensus 182 ~~~~~~~~~~~v~~~~~~p-~~~~l~t~~~d~~i~iwd-~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~l~s~~~d 253 (312)
....+ .+..+..+...| .+.++++-. ||.|.+|| .+.-+ +..+... .+.+.+.++.......+++.+.|
T Consensus 189 ~~~sv--nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd 265 (783)
T KOG1008|consen 189 SVSSV--NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD 265 (783)
T ss_pred hhhhh--hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC
Confidence 22222 234566778888 777887766 99999999 33322 1111111 22355555444445555555555
Q ss_pred -ceEEEEEecc
Q 021484 254 -VIMHVLRLQR 263 (312)
Q Consensus 254 -~~i~i~~~~~ 263 (312)
++|+.+++..
T Consensus 266 S~tIrlydi~~ 276 (783)
T KOG1008|consen 266 SITIRLYDICV 276 (783)
T ss_pred cceEEEecccc
Confidence 6888888753
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=3.9e-07 Score=81.16 Aligned_cols=189 Identities=10% Similarity=0.122 Sum_probs=125.3
Q ss_pred CCCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 105 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 105 (312)
..|...-+|++|+-.. +.|+.|+..|.|++|++.+|.. .... .+|..+|+-+.=+.+|..+.+
T Consensus 1098 rd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~--------------e~s~-ncH~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSM--------------EESV-NCHQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred hccccceeeEEeecCC-ceEEeeeccceEEEEEccCccc--------------cccc-cccccccccccccCCcceeeee
Confidence 3577889999999987 8999999999999999999973 2222 789999999999999985554
Q ss_pred ec--CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeE
Q 021484 106 YN--DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLV 183 (312)
Q Consensus 106 ~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~ 183 (312)
++ .-...+|++..-. .....|.+ -.++.| +...++-+.|+......+||+.++.++
T Consensus 1162 ss~S~PlsaLW~~~s~~---------------~~~Hsf~e------d~~vkF-sn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTG---------------GPRHSFDE------DKAVKF-SNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred ccccCchHHHhcccccc---------------Cccccccc------cceeeh-hhhHHHHHhcccccceEEEecccCcHH
Confidence 33 3367899986531 34344432 356777 666666667777778899999999887
Q ss_pred EEeec----CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC-CCCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021484 184 RLMVG----DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD-FPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 258 (312)
Q Consensus 184 ~~~~~----~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 258 (312)
.++-. ..-.-+.+.|+|+..+++- || -+||.+..+ +..+.... .....-+++.+..++--+ .|
T Consensus 1220 ~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINS-----EI 1287 (1516)
T KOG1832|consen 1220 QTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINS-----EI 1287 (1516)
T ss_pred HHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEeec-----hh
Confidence 76421 1122367889999887654 33 479988654 23322111 112222444444433322 47
Q ss_pred EEecccC
Q 021484 259 LRLQRRQ 265 (312)
Q Consensus 259 ~~~~~~~ 265 (312)
||+++..
T Consensus 1288 wD~RTF~ 1294 (1516)
T KOG1832|consen 1288 WDMRTFK 1294 (1516)
T ss_pred hhhHHHH
Confidence 7777653
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=4.4e-05 Score=67.50 Aligned_cols=155 Identities=15% Similarity=0.205 Sum_probs=109.0
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--------
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-------- 100 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------- 100 (312)
|+..-.++.|+|.| +||-|+. ..|.+-|..+.+.+.. +..|+..|+.+.|.|..
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs---------------ie~h~s~V~~VrWap~~~p~~llS~ 75 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS---------------IELHQSAVTSVRWAPAPSPRDLLSP 75 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc---------------cccCccceeEEEeccCCCchhccCc
Confidence 45556789999988 7777664 6788889888774322 26678889999997731
Q ss_pred ---C-eEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe--cCCC-CEEEEeccCceE
Q 021484 101 ---E-LLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF--GPND-EYVMSGSDCGHL 172 (312)
Q Consensus 101 ---~-~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--s~~~-~~l~~~~~dg~v 172 (312)
. +||++. .|.|.+||.... ..+..+..+..+ +..++|. -++. ..|++-.....|
T Consensus 76 ~~~~lliAsaD~~GrIil~d~~~~----------------s~~~~l~~~~~~--~qdl~W~~~rd~Srd~LlaIh~ss~l 137 (1062)
T KOG1912|consen 76 SSSQLLIASADISGRIILVDFVLA----------------SVINWLSHSNDS--VQDLCWVPARDDSRDVLLAIHGSSTL 137 (1062)
T ss_pred cccceeEEeccccCcEEEEEehhh----------------hhhhhhcCCCcc--hhheeeeeccCcchheeEEecCCcEE
Confidence 2 455664 899999999876 455556656644 7888873 2233 567777788899
Q ss_pred EEEeccCCeeEEEeecCccceEEEEEcCC-CCeEEEEeCCCcEEEccC
Q 021484 173 FIWKKKGGKLVRLMVGDRHVVNQLEPHPH-IPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 173 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~-~~~l~t~~~d~~i~iwd~ 219 (312)
.+|+..+|+.+-..........++.+.|- .+.+..-+..|.+-+-+.
T Consensus 138 vLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 138 VLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred EEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 99999999987766544556777888884 445655555666666553
No 310
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.31 E-value=0.00038 Score=58.82 Aligned_cols=208 Identities=11% Similarity=0.100 Sum_probs=121.7
Q ss_pred ceEEEEEcCCCCcEEEEEeCCC---------------eEEEEEccCCeecCCCCCCC------Cccccc-----------
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDE---------------YARVYDIRKCHWYSPISSDT------PVDTFC----------- 79 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~------~~~~~~----------- 79 (312)
.|..+.|+|.+ .+|.+=+..+ .+.+||+.++.++....... ++-.|.
T Consensus 73 ~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~ 151 (561)
T COG5354 73 DVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG 151 (561)
T ss_pred CceecccCccc-ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc
Confidence 48889999998 7888754333 49999999998764433211 111110
Q ss_pred ----cccc---ccC------CCccEEEEEEccCCC--eEEE-e-----cCCcEEEEEcCCCcCCCCCcCCcccccCCCCC
Q 021484 80 ----PRHL---IGK------NNIHITGLAYSNTSE--LLIS-Y-----NDELVYLFEKNMGLGPSPLSLSPEDLQKREEP 138 (312)
Q Consensus 80 ----~~~~---~~~------~~~~i~~~~~~~~~~--~l~s-~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 138 (312)
...+ +.. ....|....|+|.+. .|+. . .++.+++|.+..+ ..+
T Consensus 152 ~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~----------------s~l 215 (561)
T COG5354 152 SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN----------------SVL 215 (561)
T ss_pred CeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC----------------Cee
Confidence 0000 000 124566777777643 3332 1 2566778777644 222
Q ss_pred ceEecccCCceeeEEEEecCCCCEEEEec-----------cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEE
Q 021484 139 QVYSGHRNSQTVKGVNFFGPNDEYVMSGS-----------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFAT 207 (312)
Q Consensus 139 ~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-----------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t 207 (312)
..-.-.... =..+.| .+.|++|++-- ....++++++.. .-+.....-.++|.+++|.|.++.+++
T Consensus 216 ~tk~lfk~~--~~qLkW-~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S~~F~v 291 (561)
T COG5354 216 VTKNLFKVS--GVQLKW-QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSSRFAV 291 (561)
T ss_pred eeeeeEeec--ccEEEE-ecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccceeeeecccCCceeE
Confidence 222211211 245666 77777765432 135678888763 333333355789999999999988655
Q ss_pred Ee--CCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC---ceEEEEEecc
Q 021484 208 CG--IEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD---VIMHVLRLQR 263 (312)
Q Consensus 208 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~i~~~~~ 263 (312)
.+ .+..+.++|+++.-...++...... ..+++..++++..+.| +.+.+|+...
T Consensus 292 i~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT---~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 292 ISGYMPASVSVFDLRGNLRFYFPEQKRNT---IFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred EecccccceeecccccceEEecCCccccc---ccccCcccEEEEecCCccccceEEeccCC
Confidence 54 7889999999988544444333322 2256666777765555 6778887543
No 311
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=1.8e-05 Score=67.15 Aligned_cols=140 Identities=9% Similarity=0.110 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec---C-
Q 021484 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---D- 108 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---d- 108 (312)
=+-+.|||.| .+|+|-..-| |.+|--.+... ++. -.|. .|.-+.|||..++|++.+ .
T Consensus 213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~f~r---------~~R-------F~Hp-~Vq~idfSP~EkYLVT~s~~p~~ 273 (698)
T KOG2314|consen 213 ETYVRWSPKG-TYLVTFHKQG-IALWGGESFDR---------IQR-------FYHP-GVQFIDFSPNEKYLVTYSPEPII 273 (698)
T ss_pred eeeEEecCCc-eEEEEEeccc-eeeecCccHHH---------HHh-------ccCC-CceeeecCCccceEEEecCCccc
Confidence 4568999999 8999887755 77887665431 111 2343 478899999999999842 1
Q ss_pred --------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceee-EEEEecCCCCEEEEeccCceEEEEeccC
Q 021484 109 --------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK-GVNFFGPNDEYVMSGSDCGHLFIWKKKG 179 (312)
Q Consensus 109 --------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~s~~~~~l~~~~~dg~v~iwd~~~ 179 (312)
..++|||+.+| ...+.|.....+..+. -..| |.+++|+|.-.. ..|.||+..+
T Consensus 274 ~~~~d~e~~~l~IWDI~tG----------------~lkrsF~~~~~~~~~WP~frW-S~DdKy~Arm~~-~sisIyEtps 335 (698)
T KOG2314|consen 274 VEEDDNEGQQLIIWDIATG----------------LLKRSFPVIKSPYLKWPIFRW-SHDDKYFARMTG-NSISIYETPS 335 (698)
T ss_pred cCcccCCCceEEEEEcccc----------------chhcceeccCCCccccceEEe-ccCCceeEEecc-ceEEEEecCc
Confidence 46999999998 6777777643332232 3456 889999987665 5788998765
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021484 180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCG 209 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~ 209 (312)
..++..-...-..|....|+|.+..||--.
T Consensus 336 f~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 336 FMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred eeeecccccCCccccCcccCCCcceEEEEc
Confidence 443322222346788899999988776543
No 312
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=4.1e-05 Score=67.90 Aligned_cols=140 Identities=11% Similarity=0.072 Sum_probs=93.6
Q ss_pred CCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC-----CCeEEEec-CCcEEEEE
Q 021484 42 NPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT-----SELLISYN-DELVYLFE 115 (312)
Q Consensus 42 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~s~~-d~~i~iwd 115 (312)
| .++++++.||+|.|-.+.+.+.. +. ..-..++.+++++|+ .+.+++|+ .| +.++.
T Consensus 83 G-ey~asCS~DGkv~I~sl~~~~~~------------~~----~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e 144 (846)
T KOG2066|consen 83 G-EYVASCSDDGKVVIGSLFTDDEI------------TQ----YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE 144 (846)
T ss_pred C-ceEEEecCCCcEEEeeccCCccc------------ee----EecCCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence 5 89999999999999998877621 11 122567899999998 24677765 55 77775
Q ss_pred cCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccce--
Q 021484 116 KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV-- 193 (312)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-- 193 (312)
-+-- ........+...++|.++.| .|+++|-++.+| |+|||+.+.+.+..++.....+
T Consensus 145 r~wl----------------gnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~ 204 (846)
T KOG2066|consen 145 RNWL----------------GNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP 204 (846)
T ss_pred hhhh----------------cCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc
Confidence 4321 11111233444456999999 488888877654 7899999888887765332322
Q ss_pred ----EEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484 194 ----NQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 194 ----~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
..+.|.++.+.++- ..-+|+|..++.
T Consensus 205 e~fpphl~W~~~~~LVIG--W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 205 ELFPPHLHWQDEDRLVIG--WGDSVKICSIKK 234 (846)
T ss_pred ccCCCceEecCCCeEEEe--cCCeEEEEEEec
Confidence 35778777655543 346888888873
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.29 E-value=2.1e-05 Score=70.59 Aligned_cols=149 Identities=14% Similarity=0.142 Sum_probs=101.1
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec-----
Q 021484 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN----- 107 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~----- 107 (312)
|+-|+.+ + +.+.+|...|+|.+-|..+.+. .+.+..|++.|..+ .-.|+.|++++
T Consensus 180 v~imR~N--n-r~lf~G~t~G~V~LrD~~s~~~---------------iht~~aHs~siSDf--Dv~GNlLitCG~S~R~ 239 (1118)
T KOG1275|consen 180 VTIMRYN--N-RNLFCGDTRGTVFLRDPNSFET---------------IHTFDAHSGSISDF--DVQGNLLITCGYSMRR 239 (1118)
T ss_pred eEEEEec--C-cEEEeecccceEEeecCCcCce---------------eeeeeccccceeee--eccCCeEEEeeccccc
Confidence 5555443 3 7899999999999999998762 22238899888765 45677777742
Q ss_pred -----CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEec---cC
Q 021484 108 -----DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKK---KG 179 (312)
Q Consensus 108 -----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~---~~ 179 (312)
|.-|+|||+++. +.+..+.-+..+ .-+.|++.-...+++++..|...+-|. .+
T Consensus 240 ~~l~~D~FvkVYDLRmm----------------ral~PI~~~~~P---~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 240 YNLAMDPFVKVYDLRMM----------------RALSPIQFPYGP---QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ccccccchhhhhhhhhh----------------hccCCcccccCc---hhhhhcccccceEEEEecccceeeccccccCC
Confidence 223789999876 333333333322 335553333567888888999999883 32
Q ss_pred C-eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484 180 G-KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 180 ~-~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
. ..+..+......+..+.++++++.++.+..+|.|.+|.-.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 2 1122222233458999999999999999999999999843
No 314
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.29 E-value=8.2e-06 Score=69.93 Aligned_cols=72 Identities=13% Similarity=0.260 Sum_probs=60.3
Q ss_pred eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
.+.++++ +|+...|+.|+.||.|.+||...+.. .+....-.++.++|||+|.++++|+..|.+.+||+.-..
T Consensus 261 ~v~~ca~-sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 261 QVICCAR-SPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cceEEec-CcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 3889998 99999999999999999999876532 232344567899999999999999999999999976543
No 315
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=6.2e-05 Score=66.62 Aligned_cols=202 Identities=10% Similarity=0.062 Sum_probs=128.3
Q ss_pred CCccceEEEEEcCCC-----------CcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEE
Q 021484 28 MNSIRLNAIVIDPRN-----------PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAY 96 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 96 (312)
.|...|+.+.|.|.. .-+||++...|.|.+||...+.. ...+..|..++..++|
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~---------------~~~l~~~~~~~qdl~W 117 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV---------------INWLSHSNDSVQDLCW 117 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh---------------hhhhcCCCcchhheee
Confidence 378899999998731 13677788899999999987752 2222667788888988
Q ss_pred ccCC---C-eEEE-ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCce
Q 021484 97 SNTS---E-LLIS-YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH 171 (312)
Q Consensus 97 ~~~~---~-~l~s-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~ 171 (312)
-+.. + +|++ .....+.+|+..+| .....+.... ....|+.+.+-+.+.+..-+..|.
T Consensus 118 ~~~rd~Srd~LlaIh~ss~lvLwntdtG----------------~k~Wk~~ys~--~iLs~f~~DPfd~rh~~~l~s~g~ 179 (1062)
T KOG1912|consen 118 VPARDDSRDVLLAIHGSSTLVLWNTDTG----------------EKFWKYDYSH--EILSCFRVDPFDSRHFCVLGSKGF 179 (1062)
T ss_pred eeccCcchheeEEecCCcEEEEEEccCC----------------ceeeccccCC--cceeeeeeCCCCcceEEEEccCce
Confidence 7643 2 4444 46899999999988 4544444333 236677773335666666677788
Q ss_pred EEEEecc-------CCeeEEEeecCcc-----------------c--------eEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484 172 LFIWKKK-------GGKLVRLMVGDRH-----------------V--------VNQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 172 v~iwd~~-------~~~~~~~~~~~~~-----------------~--------v~~~~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
+.+-+.- .++..+.-..|.. + ...++|+|.-+.++.......+.++|+
T Consensus 180 vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dl 259 (1062)
T KOG1912|consen 180 VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDL 259 (1062)
T ss_pred EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcc
Confidence 8777642 1233322222221 0 122567888776656666789999999
Q ss_pred CCCCC-CCCCCChhhhhhhhccCC--CCceeEEecCCceEEEEEecc
Q 021484 220 MPTDF-PPLPDNAEKIMKANKQGR--EDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 220 ~~~~~-~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~i~i~~~~~ 263 (312)
+-... ..++-... -.....+.+ ....|+.+-.||.+.+|.-+.
T Consensus 260 e~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 260 EYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 86653 22221122 112233334 466889999999999997543
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.27 E-value=0.00011 Score=68.14 Aligned_cols=172 Identities=10% Similarity=0.117 Sum_probs=102.5
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCC-------CCC--ccccccccccc---------------
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-------DTP--VDTFCPRHLIG--------------- 85 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~--~~~~~~~~~~~--------------- 85 (312)
..+|.+++|+|++ ..++..+..+++.+-.- +..++.+-.. ... +..-...+.+.
T Consensus 109 d~GI~aaswS~De-e~l~liT~~~tll~mT~-~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e 186 (1265)
T KOG1920|consen 109 DNGISAASWSPDE-ELLALITGRQTLLFMTK-DFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE 186 (1265)
T ss_pred cCceEEEeecCCC-cEEEEEeCCcEEEEEec-cccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence 4589999999999 78888888777766442 1221111100 000 00000000000
Q ss_pred ---C---CCccEEEEEEccCCCeEEEe-----cC-CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEE
Q 021484 86 ---K---NNIHITGLAYSNTSELLISY-----ND-ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 153 (312)
Q Consensus 86 ---~---~~~~i~~~~~~~~~~~l~s~-----~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 153 (312)
+ -...=++|.|-.||+++|++ .+ ..|++||.+ + .+-.+-.... ..-.++
T Consensus 187 k~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g----------------~Lns~se~~~--~l~~~L 247 (1265)
T KOG1920|consen 187 KALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-G----------------ALNSTSEPVE--GLQHSL 247 (1265)
T ss_pred ccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-c----------------hhhcccCccc--ccccce
Confidence 0 11122468999999988872 25 789999987 3 1211111111 224678
Q ss_pred EEecCCCCEEEEec---cCceEEEEecc---CCeeEEEeecCccceEEEEEcCCCCeEEE---EeCCCcEEEccCCCCC
Q 021484 154 NFFGPNDEYVMSGS---DCGHLFIWKKK---GGKLVRLMVGDRHVVNQLEPHPHIPMFAT---CGIEKTVKLWAPMPTD 223 (312)
Q Consensus 154 ~~~s~~~~~l~~~~---~dg~v~iwd~~---~~~~~~~~~~~~~~v~~~~~~p~~~~l~t---~~~d~~i~iwd~~~~~ 223 (312)
+| -|.|..+++-. .|+.|.+|..+ .++....+......|..++|+.++..||+ ......|++|-+....
T Consensus 248 sW-kPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 248 SW-KPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ee-cCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 88 89999988753 46678888743 23333333434445899999999999877 4445559999988764
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.18 E-value=2.5e-05 Score=70.18 Aligned_cols=177 Identities=10% Similarity=0.052 Sum_probs=123.3
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP 122 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 122 (312)
..++.|+-...+..+|+++.+.... . .-....|+-+. .+++++.+| ..|+|.+-|.++.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~------------~---~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~--- 207 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRT------------T---NVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF--- 207 (1118)
T ss_pred cceeecchhhheeeeecccceeeee------------e---eccCCceEEEE--ecCcEEEeecccceEEeecCCcC---
Confidence 4566666666777788887752211 0 11122355544 356788887 4999999999987
Q ss_pred CCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---------CceEEEEeccCCeeEEEeecCccce
Q 021484 123 SPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---------CGHLFIWKKKGGKLVRLMVGDRHVV 193 (312)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---------dg~v~iwd~~~~~~~~~~~~~~~~v 193 (312)
+.+.++..|.+. +.++ +..|+.|++++. |..|+|||++..+.+..+.-+.++
T Consensus 208 -------------~~iht~~aHs~s--iSDf---Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P- 268 (1118)
T KOG1275|consen 208 -------------ETIHTFDAHSGS--ISDF---DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP- 268 (1118)
T ss_pred -------------ceeeeeeccccc--eeee---eccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-
Confidence 788999999976 7664 567999998875 667899999988877766655544
Q ss_pred EEEEEcCCCCe-EEEEeCCCcEEEccCCC---CCCCC--CCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484 194 NQLEPHPHIPM-FATCGIEKTVKLWAPMP---TDFPP--LPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 194 ~~~~~~p~~~~-l~t~~~d~~i~iwd~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
.-+.|+|.-.. ++.++..|...+-|..+ ..... +...... +.....++++..++-+..++.+.+|.
T Consensus 269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~-i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSG-ISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCc-ceeEEecCCCceEEEecccCcEeeec
Confidence 56889997654 78888889999988433 22211 1112222 33344677888999999999999997
No 318
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.12 E-value=0.00021 Score=56.90 Aligned_cols=139 Identities=14% Similarity=0.101 Sum_probs=84.1
Q ss_pred CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCccc
Q 021484 52 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPED 131 (312)
Q Consensus 52 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~ 131 (312)
+|.|..||..+++.+.... + ..............++.+++...++.|+.||..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~------------~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG------------ 56 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD------------L-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTG------------ 56 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE------------C-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTS------------
T ss_pred CCEEEEEECCCCCEEEEEE------------C-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCC------------
Confidence 6889999998887543211 1 10012222223333444555557999999999888
Q ss_pred ccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe-ecCc---cceEEEEEcCCCCeEEE
Q 021484 132 LQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-VGDR---HVVNQLEPHPHIPMFAT 207 (312)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~---~~v~~~~~~p~~~~l~t 207 (312)
+.+..+...... ..... ..+..+++++.++.|..+|..+|+.+-.. .... ...........+..++.
T Consensus 57 ----~~~W~~~~~~~~--~~~~~---~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (238)
T PF13360_consen 57 ----KVLWRFDLPGPI--SGAPV---VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV 127 (238)
T ss_dssp ----EEEEEEECSSCG--GSGEE---EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE
T ss_pred ----CEEEEeeccccc--cceee---ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEE
Confidence 566555542211 11111 23555666668889999999999988774 3221 11122233334778888
Q ss_pred EeCCCcEEEccCCCCCC
Q 021484 208 CGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 208 ~~~d~~i~iwd~~~~~~ 224 (312)
+..++.|..+|++++++
T Consensus 128 ~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 128 GTSSGKLVALDPKTGKL 144 (238)
T ss_dssp EETCSEEEEEETTTTEE
T ss_pred EeccCcEEEEecCCCcE
Confidence 88899999999998864
No 319
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.08 E-value=1.9e-05 Score=42.35 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=34.8
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021484 180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 218 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd 218 (312)
+++...+..|...|.++.|+|.+..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456677778889999999999999999999999999996
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0008 Score=60.53 Aligned_cols=159 Identities=11% Similarity=0.137 Sum_probs=97.5
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-CeEEE-ecC-C----
Q 021484 37 VIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-ELLIS-YND-E---- 109 (312)
Q Consensus 37 ~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~s-~~d-~---- 109 (312)
+|++.+ ..++.|+.+|.|.+++-.-.- +..| ..+...+...-+.-++ .+|++ +.| +
T Consensus 30 c~~s~~-~~vvigt~~G~V~~Ln~s~~~----------~~~f------qa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~ 92 (933)
T KOG2114|consen 30 CCSSST-GSVVIGTADGRVVILNSSFQL----------IRGF------QAYEQSIVQFLYILNKQNFLFSVGEDEQGNPV 92 (933)
T ss_pred EEcCCC-ceEEEeeccccEEEeccccee----------eehh------eecchhhhhHhhcccCceEEEEEeecCCCCce
Confidence 466766 699999999999888754221 1111 3444443333344444 47776 543 3
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCC---ceEe--cccCCceeeEEEEecCCCCEEEEeccCceEEEEecc---C-C
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEP---QVYS--GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---G-G 180 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~---~-~ 180 (312)
.+++|+++...+... ..++ +.+. ....+.++.+++. +.+-+.+++|-.+|.|..+.-+ . +
T Consensus 93 llkiw~lek~~~n~s----------P~c~~~~ri~~~~np~~~~p~s~l~V-s~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNS----------PQCLYEHRIFTIKNPTNPSPASSLAV-SEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred EEEEecccccCCCCC----------cceeeeeeeeccCCCCCCCcceEEEE-EccccEEEEEecCcEEEEEcCcchhccc
Confidence 589999976521110 0222 2222 1222345888888 7889999999999999988521 1 2
Q ss_pred eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 181 KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
....-......+|+.+++..++..++-+..-..|.+|.+.+..
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT 204 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC
Confidence 2111222345799999999888873334445789999998665
No 321
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=9.1e-05 Score=61.53 Aligned_cols=164 Identities=12% Similarity=0.126 Sum_probs=111.1
Q ss_pred CccceEEEEEcCCCCcEEEEEeC-CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eEEE
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGS-DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLIS 105 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s 105 (312)
|-..|.+++.+-++ .++.+++. |..++++|+.+-.+++.+... .+ .+.+. +-.++... .++.
T Consensus 52 HL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~---------~l----Pg~a~-wv~skGd~~s~IAV 116 (558)
T KOG0882|consen 52 HLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVENFDMINMIKLV---------DL----PGFAE-WVTSKGDKISLIAV 116 (558)
T ss_pred HHHHHHhhhccccc-eeEeeccCcccceeEEEeeccchhhhcccc---------cC----CCceE-EecCCCCeeeeEEe
Confidence 66778888888888 78899777 999999999987754332111 11 11111 11222221 4444
Q ss_pred e--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC----
Q 021484 106 Y--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---- 179 (312)
Q Consensus 106 ~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~---- 179 (312)
+ .++.+.++|-..... +....-.-|..+ |..+.+ .+.+..+++....|.|.-|....
T Consensus 117 s~~~sg~i~VvD~~~d~~--------------q~~~fkklH~sP--V~~i~y-~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 117 SLFKSGKIFVVDGFGDFC--------------QDGYFKKLHFSP--VKKIRY-NQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred ecccCCCcEEECCcCCcC--------------ccceecccccCc--eEEEEe-eccccceeeccccceeEeecCCCcccC
Confidence 4 489999999876410 122222345544 999998 89999999999999999998762
Q ss_pred --CeeEEEee---------cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484 180 --GKLVRLMV---------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 180 --~~~~~~~~---------~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
.+....++ -......++.|+|++..+.+-+.|..|++++..++++
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 11111111 1234568899999999999999999999999988753
No 322
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.99 E-value=0.00041 Score=58.63 Aligned_cols=113 Identities=18% Similarity=0.194 Sum_probs=86.7
Q ss_pred cCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE
Q 021484 85 GKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 164 (312)
Q Consensus 85 ~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~ 164 (312)
....-++..+.|||.|.+|++..-..|.+|.-... ..+..+. |. .|..+.| +|.++||.
T Consensus 29 ~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~----------------~~l~~~~-~~---~V~~~~f-SP~~kYL~ 87 (561)
T COG5354 29 ESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSK----------------AKLVRFR-HP---DVKYLDF-SPNEKYLV 87 (561)
T ss_pred cccCcchhheeecCcchheehhhccceEEccccch----------------hheeeee-cC---Cceeccc-Ccccceee
Confidence 33456788999999999999998888999998765 3334443 22 2888998 99999999
Q ss_pred EeccCc---------------eEEEEeccCCeeEEEeecCccc--eE-EEEEcCCCCeEEEEeCCCcEEEccC
Q 021484 165 SGSDCG---------------HLFIWKKKGGKLVRLMVGDRHV--VN-QLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 165 ~~~~dg---------------~v~iwd~~~~~~~~~~~~~~~~--v~-~~~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
+=+..+ .+.+||..++..+..+.....+ .. -+.|+-+.+++|-. ....++|+++
T Consensus 88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~ 159 (561)
T COG5354 88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI 159 (561)
T ss_pred eeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec
Confidence 866544 4999999999999988766554 44 67899888886544 3457899997
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.97 E-value=0.0032 Score=49.09 Aligned_cols=147 Identities=10% Similarity=0.018 Sum_probs=93.9
Q ss_pred CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCC
Q 021484 40 PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNM 118 (312)
Q Consensus 40 p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~ 118 (312)
++...+++.|+..+.+..-|..++++..+... ...|.+-+.- -|.+++.+ -.|.+++.+..+
T Consensus 20 ~dskT~v~igSHs~~~~avd~~sG~~~We~il----------------g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t 82 (354)
T KOG4649|consen 20 NDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL----------------GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT 82 (354)
T ss_pred cCCceEEEEecCCceEEEecCCCCcEEeehhh----------------CceeeeeeEE-ECCEEEEEEccCcEEEEEecc
Confidence 44447889999999999999999986533211 1222222221 34555554 699999999998
Q ss_pred CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEE
Q 021484 119 GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 198 (312)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~ 198 (312)
+ .+...+.....- .+... . ++++..+..|+.|++.+..|.++..++...+-..+...+-+.
T Consensus 83 G----------------s~~w~f~~~~~v-k~~a~-~-d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i 143 (354)
T KOG4649|consen 83 G----------------SQIWNFVILETV-KVRAQ-C-DFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVI 143 (354)
T ss_pred h----------------hheeeeeehhhh-ccceE-E-cCCCceEEEecCCCcEEEecccccceEEecccCCceecccee
Confidence 8 566666543321 12222 3 789999999999999999999998888877644444445556
Q ss_pred cCCCCeEEEEeCCCcEEEccCCCC
Q 021484 199 HPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 199 ~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
.|-...|..+...|.+---+.+..
T Consensus 144 ~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 144 APGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred cCCCceEEEEeccceEEEEccCCC
Confidence 663333444444555544444443
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.93 E-value=2.8e-06 Score=73.23 Aligned_cols=163 Identities=17% Similarity=0.249 Sum_probs=104.7
Q ss_pred CCCccceEEEEEcCCCCcEEEEEe----CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe
Q 021484 27 PMNSIRLNAIVIDPRNPNYFAVGG----SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL 102 (312)
Q Consensus 27 ~~h~~~v~~~~~~p~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 102 (312)
|+|..+.++++|++-..+.||+|- .|..+.|||+.++--. |.. ...+..+......+++|-.+.++
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltv-------Pke---~~~fs~~~l~gqns~cwlrd~kl 168 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTV-------PKE---SPLFSSSTLDGQNSVCWLRDTKL 168 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCC-------Ccc---ccccccccccCccccccccCcch
Confidence 678889999999997557888873 4678999999877310 110 01110112334458888877787
Q ss_pred EEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC-CCCEEEEeccCceEEEEe-ccC
Q 021484 103 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP-NDEYVMSGSDCGHLFIWK-KKG 179 (312)
Q Consensus 103 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~-~~~~l~~~~~dg~v~iwd-~~~ 179 (312)
+.+| ....+.++|++.. ..+...-.. +.+..+.. +| .++|+++-. ||.|.+|| .+.
T Consensus 169 vlaGm~sr~~~ifdlRqs-----------------~~~~~svnT--k~vqG~tV-dp~~~nY~cs~~-dg~iAiwD~~rn 227 (783)
T KOG1008|consen 169 VLAGMTSRSVHIFDLRQS-----------------LDSVSSVNT--KYVQGITV-DPFSPNYFCSNS-DGDIAIWDTYRN 227 (783)
T ss_pred hhcccccchhhhhhhhhh-----------------hhhhhhhhh--hhccccee-cCCCCCceeccc-cCceeeccchhh
Confidence 7777 4789999999853 111111122 23566666 66 778877655 99999999 333
Q ss_pred C-eeEEEeecCc----cceEEEEEcCCCCe-EEEEeC-CCcEEEccCC
Q 021484 180 G-KLVRLMVGDR----HVVNQLEPHPHIPM-FATCGI-EKTVKLWAPM 220 (312)
Q Consensus 180 ~-~~~~~~~~~~----~~v~~~~~~p~~~~-l~t~~~-d~~i~iwd~~ 220 (312)
- .++..+...+ ..+..++|+|...- +++... .++|+++++.
T Consensus 228 ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 228 IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 2 2333332112 24889999998755 666664 4789999976
No 325
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00066 Score=58.46 Aligned_cols=157 Identities=10% Similarity=0.017 Sum_probs=92.7
Q ss_pred ccceEEEEEcCCCCcEEEEEeCC---CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSD---EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
...+..-+|+|++..+....-.. ..+.++++.+++-. .+.. ....-...+|+|+|+.|+-+
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-------~i~~---------~~g~~~~P~fspDG~~l~f~ 255 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-------VILN---------FNGNNGAPAFSPDGSKLAFS 255 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-------eeec---------cCCccCCccCCCCCCEEEEE
Confidence 34567788999985444443222 35888999887621 1111 12333456899999866654
Q ss_pred --cCCc--EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-Cc--eEEEEeccC
Q 021484 107 --NDEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD-CG--HLFIWKKKG 179 (312)
Q Consensus 107 --~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~-dg--~v~iwd~~~ 179 (312)
.|+. |+++|+.++ . ...+...... -..-.| +|+|++++-.+. .| .|.+.++..
T Consensus 256 ~~rdg~~~iy~~dl~~~----------------~-~~~Lt~~~gi--~~~Ps~-spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 256 SSRDGSPDIYLMDLDGK----------------N-LPRLTNGFGI--NTSPSW-SPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred ECCCCCccEEEEcCCCC----------------c-ceecccCCcc--ccCccC-CCCCCEEEEEeCCCCCcceEEECCCC
Confidence 3654 677787765 2 2223322221 224556 999999876554 44 466677775
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEeC-CCc--EEEccCCCCC
Q 021484 180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCGI-EKT--VKLWAPMPTD 223 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~-d~~--i~iwd~~~~~ 223 (312)
+.. ..+......-..-.|+|+|++++..+. +|. |.+.++.++.
T Consensus 316 ~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 316 SQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred Cce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 554 333323322236789999999877764 344 6666665544
No 326
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.93 E-value=0.003 Score=52.82 Aligned_cols=184 Identities=10% Similarity=0.073 Sum_probs=106.5
Q ss_pred CeeecccCccceeeEEecccccCCcCCCCccceEEEEEcCC---CCcEEEEEeC---------C-CeEEEEEccCCeecC
Q 021484 1 MWQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPR---NPNYFAVGGS---------D-EYARVYDIRKCHWYS 67 (312)
Q Consensus 1 v~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~---~~~~l~~~~~---------d-g~i~iwd~~~~~~~~ 67 (312)
|++.|..+......+...... +...+..+.+..+ ...+|++|+. . |.|.++++.....
T Consensus 4 i~l~d~~~~~~~~~~~l~~~E-------~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~-- 74 (321)
T PF03178_consen 4 IRLVDPTTFEVLDSFELEPNE-------HVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE-- 74 (321)
T ss_dssp EEEEETTTSSEEEEEEEETTE-------EEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----
T ss_pred EEEEeCCCCeEEEEEECCCCc-------eEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc--
Confidence 466676665544444443322 2223334444432 1367877753 2 8999999987400
Q ss_pred CCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC
Q 021484 68 PISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS 147 (312)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (312)
....+ ..... ....++|++++-- +..|+.+..+.|++|++... +.+.....+...
T Consensus 75 ---~~~~l---~~i~~-~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~----------------~~l~~~~~~~~~ 129 (321)
T PF03178_consen 75 ---NNFKL---KLIHS-TEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNS----------------KTLLKKAFYDSP 129 (321)
T ss_dssp ------EE---EEEEE-EEESS-EEEEEEE--TTEEEEEETTEEEEEEEETT----------------SSEEEEEEE-BS
T ss_pred ---cceEE---EEEEE-EeecCcceEhhhh--CCEEEEeecCEEEEEEccCc----------------ccchhhheecce
Confidence 00001 11111 2336778888766 33477777899999999876 312222222222
Q ss_pred ceeeEEEEecCCCCEEEEeccCceEEEEeccC-CeeEEEee--cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484 148 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG-GKLVRLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 148 ~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~--~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
..+.++.. .+++++.|.....+.++.++. ++.+..+. .....++++.|-++++.++.+..+|.|.++....
T Consensus 130 ~~i~sl~~---~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 130 FYITSLSV---FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSEEEEEE---ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEEEec---cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 24777765 367999999888888875543 33333332 2345688888987777899999999999998764
No 327
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.87 E-value=0.0047 Score=49.05 Aligned_cols=167 Identities=13% Similarity=0.142 Sum_probs=94.0
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
...+..++|+|+...++++....+.|..++.. ++++..+ .+ .+ ....-.|++..++.++++. .+
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i------------~l-~g-~~D~EgI~y~g~~~~vl~~Er~ 85 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI------------PL-DG-FGDYEGITYLGNGRYVLSEERD 85 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE------------E--SS--SSEEEEEE-STTEEEEEETTT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE------------eC-CC-CCCceeEEEECCCEEEEEEcCC
Confidence 44699999999875788888899999888875 5532111 11 22 3456788888888888777 49
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe--cc-cCCceeeEEEEecCCCCEEEEeccCceEEEEeccC---Cee
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GH-RNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG---GKL 182 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~---~~~ 182 (312)
+.+.++++...... +.. ...+.+. .. ....-+-.++| ++.++.|+.+-+..-..+|.++. ...
T Consensus 86 ~~L~~~~~~~~~~~----~~~------~~~~~~~l~~~~~~N~G~EGla~-D~~~~~L~v~kE~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 86 QRLYIFTIDDDTTS----LDR------ADVQKISLGFPNKGNKGFEGLAY-DPKTNRLFVAKERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp TEEEEEEE----TT------E------EEEEEEE---S---SS--EEEEE-ETTTTEEEEEEESSSEEEEEEESTT-SS-
T ss_pred CcEEEEEEeccccc----cch------hhceEEecccccCCCcceEEEEE-cCCCCEEEEEeCCCChhhEEEccccCccc
Confidence 99999998543100 000 0111121 11 11123889999 88888888887777677776653 222
Q ss_pred EEEe--e------cCccceEEEEEcCCCCe-EEEEeCCCcEEEccCCCC
Q 021484 183 VRLM--V------GDRHVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 183 ~~~~--~------~~~~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~ 222 (312)
+... . .....+.+++++|.... ++.......|-.+|..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~ 203 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR 203 (248)
T ss_dssp -EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--
T ss_pred eeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC
Confidence 2111 1 12345788999997655 566667788888985554
No 328
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.82 E-value=0.00043 Score=59.60 Aligned_cols=159 Identities=12% Similarity=0.122 Sum_probs=90.6
Q ss_pred eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeCCCeEEE--EEccCCeecCCCCCCCCccccc
Q 021484 2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGSDEYARV--YDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~dg~i~i--wd~~~~~~~~~~~~~~~~~~~~ 79 (312)
.++|+.+.+...+... ...-..-+|+|+|..++++...||...| +|+.+++..
T Consensus 221 ~~~~l~~g~~~~i~~~------------~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~------------- 275 (425)
T COG0823 221 YYLDLNTGKRPVILNF------------NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP------------- 275 (425)
T ss_pred EEEeccCCccceeecc------------CCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-------------
Confidence 3556665554444442 2233457899999777777778877555 456555411
Q ss_pred ccccccCCCccEEEEEEccCCCeEEEec--CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE
Q 021484 80 PRHLIGKNNIHITGLAYSNTSELLISYN--DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 155 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~~l~s~~--d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 155 (312)
. + ..-.+.-..-.|+|+|+.++-.+ .| .|++++.+.. .. ..+...... -..-.|
T Consensus 276 -~-L-t~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~----------------~~-~riT~~~~~--~~~p~~ 333 (425)
T COG0823 276 -R-L-TNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS----------------QV-TRLTFSGGG--NSNPVW 333 (425)
T ss_pred -e-c-ccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC----------------ce-eEeeccCCC--CcCccC
Confidence 1 1 11122222568999999666542 44 4666677664 22 333333222 114556
Q ss_pred ecCCCCEEEEecc-Cce--EEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021484 156 FGPNDEYVMSGSD-CGH--LFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 209 (312)
Q Consensus 156 ~s~~~~~l~~~~~-dg~--v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~ 209 (312)
+|+|++|+..+. +|. |.+.|+.++..++.+. +........|.|+++.+...+
T Consensus 334 -SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 334 -SPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred -CCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEec
Confidence 999999887664 344 6667776655444333 333444567888888765544
No 329
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.82 E-value=0.0018 Score=55.87 Aligned_cols=214 Identities=7% Similarity=-0.020 Sum_probs=113.6
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 123 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 123 (312)
..++.++.++.++.+|..+++.....+...++ ...++ . .++.+++...++.++-+|..++
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-----------~ssP~----v-~~~~v~v~~~~g~l~ald~~tG---- 180 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA-----------LSRPV----V-SDGLVLVHTSNGMLQALNESDG---- 180 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCce-----------ecCCE----E-ECCEEEEECCCCEEEEEEccCC----
Confidence 35677788999999999999865443211110 01111 1 1445555557899999999887
Q ss_pred CCcCCcccccCCCCCceEecccCCce---eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCcc-------ce
Q 021484 124 PLSLSPEDLQKREEPQVYSGHRNSQT---VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-------VV 193 (312)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~v 193 (312)
+.+..+........ ..+-.. .+..++.++.+|.+..+|..+|+.+-....... ..
T Consensus 181 ------------~~~W~~~~~~~~~~~~~~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~ 245 (394)
T PRK11138 181 ------------AVKWTVNLDVPSLTLRGESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL 245 (394)
T ss_pred ------------CEeeeecCCCCcccccCCCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence 44444432211000 001111 133566778889999999998876544321100 01
Q ss_pred EEEEEcC--CCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCccceeE
Q 021484 194 NQLEPHP--HIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTLAYRE 271 (312)
Q Consensus 194 ~~~~~~p--~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~~~~~ 271 (312)
..+.-+| .+..++.++.+|.+..+|+.+++..=-... ..... ....+..++.++.++.+..++..++. ..|..
T Consensus 246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~~~~~---~~~~~~~vy~~~~~g~l~ald~~tG~-~~W~~ 320 (394)
T PRK11138 246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-GSVND---FAVDGGRIYLVDQNDRVYALDTRGGV-ELWSQ 320 (394)
T ss_pred cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-CCccC---cEEECCEEEEEcCCCeEEEEECCCCc-EEEcc
Confidence 1111222 245566677789999999888763100000 00000 11234566667778888888765542 22321
Q ss_pred ee----------cCCCccCCCCCCCeEEEeecCCCC
Q 021484 272 RR----------YNAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 272 ~~----------~~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
.. .....+...+.+|.++++|..+|.
T Consensus 321 ~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~ 356 (394)
T PRK11138 321 SDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGR 356 (394)
T ss_pred cccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCC
Confidence 10 012223334556777777776664
No 330
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.81 E-value=0.002 Score=43.54 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=64.6
Q ss_pred eEEEEEc---CCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484 33 LNAIVID---PRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 33 v~~~~~~---p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
|++|++. -+|.+.|++|+.|..||+|+-..-- .. ......|++++-...+++..+..+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~----------------~E--i~e~~~v~~L~~~~~~~F~Y~l~NG 63 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIV----------------AE--ITETDKVTSLCSLGGGRFAYALANG 63 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEE----------------EE--EecccceEEEEEcCCCEEEEEecCC
Confidence 4555554 4566899999999999999865321 11 1224667888777765555555899
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC---CEEEEeccCceEE
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND---EYVMSGSDCGHLF 173 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~---~~l~~~~~dg~v~ 173 (312)
+|-+|+-.. .+...+... .+.++++++.++ ..|++|-.+|.|-
T Consensus 64 TVGvY~~~~------------------RlWRiKSK~---~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 64 TVGVYDRSQ------------------RLWRIKSKN---QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEEeCcc------------------eeeeeccCC---CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 999998643 222222222 266666645543 3588888888774
No 331
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.78 E-value=0.0053 Score=52.95 Aligned_cols=225 Identities=12% Similarity=0.089 Sum_probs=118.8
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCC-CccEE-EEEEccCCCeEEEecCCcEEEEEcCCCcC
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKN-NIHIT-GLAYSNTSELLISYNDELVYLFEKNMGLG 121 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~-~~~~~~~~~~l~s~~d~~i~iwd~~~~~~ 121 (312)
..+++++.++.+..+|..+++.+...+.......+ ... ...+. .+.. .++++++.+.++.++-+|..++
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~------~~~~~~~~~~~~~v-~~~~v~v~~~~g~l~ald~~tG-- 140 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWF------SKNKSALLSGGVTV-AGGKVYIGSEKGQVYALNAEDG-- 140 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCCccccc------ccccccccccccEE-ECCEEEEEcCCCEEEEEECCCC--
Confidence 46777788899999999999865443222110000 000 00000 1111 1344555567899999999888
Q ss_pred CCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE-EEEEcC
Q 021484 122 PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-QLEPHP 200 (312)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~p 200 (312)
+.+......... ...... .+..++.++.++.|..+|..+|+.+-.......... ...-+|
T Consensus 141 --------------~~~W~~~~~~~~--~ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP 201 (394)
T PRK11138 141 --------------EVAWQTKVAGEA--LSRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAP 201 (394)
T ss_pred --------------CCcccccCCCce--ecCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCC
Confidence 555544332211 111112 245677788899999999999998766643211100 000112
Q ss_pred --CCCeEEEEeCCCcEEEccCCCCCCC-C--CCCCh--hhh--hhhhccCC--CCceeEEecCCceEEEEEecccCccce
Q 021484 201 --HIPMFATCGIEKTVKLWAPMPTDFP-P--LPDNA--EKI--MKANKQGR--EDHSRITLTPDVIMHVLRLQRRQTLAY 269 (312)
Q Consensus 201 --~~~~l~t~~~d~~i~iwd~~~~~~~-~--~~~~~--~~~--~~~~~~~~--~~~~l~s~~~d~~i~i~~~~~~~~~~~ 269 (312)
.+..++.++.++.+...|..+++.. . +.... ... +......+ .+..++.++.++.+..+|..++. ..|
T Consensus 202 ~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~-~~W 280 (394)
T PRK11138 202 ATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ-IVW 280 (394)
T ss_pred EEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC-EEE
Confidence 1234666677888988888877531 1 10000 000 00000111 24566677788888888877663 333
Q ss_pred eEeec-------CCCccCCCCCCCeEEEeecCCCC
Q 021484 270 RERRY-------NAADFESDEEEGETYLLGFSDSD 297 (312)
Q Consensus 270 ~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~ 297 (312)
..... ....+.....++.++.++..+|.
T Consensus 281 ~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 281 KREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred eecCCCccCcEEECCEEEEEcCCCeEEEEECCCCc
Confidence 31111 11222233456778888877764
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.78 E-value=0.0015 Score=55.65 Aligned_cols=213 Identities=12% Similarity=0.167 Sum_probs=111.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecC------CCC----------------------CCCCccccccccc
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYS------PIS----------------------SDTPVDTFCPRHL 83 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~------~~~----------------------~~~~~~~~~~~~~ 83 (312)
.|+.+.|.++. .-|++|...|.|.+|.....+-.. ..+ .+.....|.+..+
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58999999987 689999999999999886543221 000 0001123445555
Q ss_pred ccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceE------ecccCCceeeEEEEe
Q 021484 84 IGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVY------SGHRNSQTVKGVNFF 156 (312)
Q Consensus 84 ~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~v~~~ 156 (312)
+....++|++++.|.-| ++|.+ .+|.+.|.|++.. ..+..- ..+.....++++.|.
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGP----------------avI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGP----------------AVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTT----------------EEEEEEEGGG--T-SS----EEEEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCC----------------eEEeeccccccccccccccCeeEEEEE
Confidence 56668999999997555 55554 7999999999765 222111 111122347777772
Q ss_pred ----cCCC---CEEEEeccCceEEEEeccC---Cee----EEEeecCccceEEEE-EcCC-C------------------
Q 021484 157 ----GPND---EYVMSGSDCGHLFIWKKKG---GKL----VRLMVGDRHVVNQLE-PHPH-I------------------ 202 (312)
Q Consensus 157 ----s~~~---~~l~~~~~dg~v~iwd~~~---~~~----~~~~~~~~~~v~~~~-~~p~-~------------------ 202 (312)
..++ -.|++|+..|.+.+|.+.. +.. ......+.++|..+. ++.+ |
T Consensus 145 vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~ 224 (395)
T PF08596_consen 145 VMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGIS 224 (395)
T ss_dssp EEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred EEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence 2222 4788999999999998642 211 111123445555544 3211 1
Q ss_pred -CeEEEEeCCCcEEEccCCCCCC--CCCCCChhhhhhhhcc-----CCCCceeEEecCCceEEEEEeccc
Q 021484 203 -PMFATCGIEKTVKLWAPMPTDF--PPLPDNAEKIMKANKQ-----GREDHSRITLTPDVIMHVLRLQRR 264 (312)
Q Consensus 203 -~~l~t~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~l~s~~~d~~i~i~~~~~~ 264 (312)
+.++....+..+|++.+.+.+. +.+. ... ......+ ...+..|+....+|.++++.+..-
T Consensus 225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~-~~~-~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 225 IPGYVVVVSESDIRVFKPPKSKGAHKSFD-DPF-LCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp --EEEEEE-SSEEEEE-TT---EEEEE-S-S-E-EEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred cCcEEEEEcccceEEEeCCCCcccceeec-ccc-ccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 2244445588999999887653 2221 111 1111111 224567889999999999987654
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.00048 Score=60.54 Aligned_cols=120 Identities=17% Similarity=0.170 Sum_probs=83.8
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~ 107 (312)
|+..|.=-+++..+ .+++.|++-|.+++|+-..+++.... ..+....+..+..+++..++|.+ .
T Consensus 32 ~~~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~~~~~~--------------~~~~~~~~~~~~vs~~e~lvAagt~ 96 (726)
T KOG3621|consen 32 FPARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGEMRKLK--------------NEGATGITCVRSVSSVEYLVAAGTA 96 (726)
T ss_pred CcceEEEEEeecCC-ceEEEecccceEEEEecCchhhhccc--------------ccCccceEEEEEecchhHhhhhhcC
Confidence 44555555566666 79999999999999998877643211 02234456667778887777776 5
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe---cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS---GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG 179 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~ 179 (312)
.|.|.++.+.....+ .....-. .|.. .|++++| ++++..+++|...|+|..-.+.+
T Consensus 97 ~g~V~v~ql~~~~p~-------------~~~~~t~~d~~~~~--rVTal~W-s~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 97 SGRVSVFQLNKELPR-------------DLDYVTPCDKSHKC--RVTALEW-SKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CceEEeehhhccCCC-------------cceeeccccccCCc--eEEEEEe-cccccEEeecCCCceEEEEEech
Confidence 889999988764211 1111111 1343 4999999 99999999999999999887766
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00025 Score=62.20 Aligned_cols=117 Identities=14% Similarity=0.069 Sum_probs=83.9
Q ss_pred CCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021484 87 NNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 165 (312)
Q Consensus 87 ~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~ 165 (312)
+...+.--++...+++++.| +-|.+++|+...+ ..+.++.......+..++. +++..++|.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~-----------------~~~~~~~~~~~~~~~~~~v-s~~e~lvAa 93 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG-----------------EMRKLKNEGATGITCVRSV-SSVEYLVAA 93 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCch-----------------hhhcccccCccceEEEEEe-cchhHhhhh
Confidence 44556666777788888887 6999999998876 2222222111122344444 888999999
Q ss_pred eccCceEEEEeccCCeeE-----EEe-ecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484 166 GSDCGHLFIWKKKGGKLV-----RLM-VGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 166 ~~~dg~v~iwd~~~~~~~-----~~~-~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
|+..|.|.++-+....+- ... +.|...|++++|++++..+.+|...|+|.+-.+..
T Consensus 94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 999999999987754331 111 24678999999999999999999999998876655
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.67 E-value=0.0043 Score=55.07 Aligned_cols=109 Identities=8% Similarity=0.011 Sum_probs=73.3
Q ss_pred EccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEE
Q 021484 96 YSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFI 174 (312)
Q Consensus 96 ~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~i 174 (312)
+.++|++... .++.|.+.|..+... ...+.+..+.... ....+++ +|+|+++++++ .+.+|.|
T Consensus 284 ~vkdGK~~~V-~gn~V~VID~~t~~~-----------~~~~v~~yIPVGK---sPHGV~v-SPDGkylyVanklS~tVSV 347 (635)
T PRK02888 284 AVKAGKFKTI-GGSKVPVVDGRKAAN-----------AGSALTRYVPVPK---NPHGVNT-SPDGKYFIANGKLSPTVTV 347 (635)
T ss_pred hhhCCCEEEE-CCCEEEEEECCcccc-----------CCcceEEEEECCC---CccceEE-CCCCCEEEEeCCCCCcEEE
Confidence 3456764443 467899999876100 0002333333222 2788998 99999987665 5899999
Q ss_pred EeccCCee------------EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484 175 WKKKGGKL------------VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 175 wd~~~~~~------------~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
.|+.+.+. +.+.....++ ...+|.++|....|...|..|..|++..
T Consensus 348 IDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 348 IDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 99887542 3344333333 4678999998888888999999999765
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0043 Score=56.07 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=88.3
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCe-EEEec
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSEL-LISYN 107 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~s~~ 107 (312)
.+.++.+++.+.+- ..+++|-.+|.|..+.-+-.+-. . ....+.....++|+.+++..+++. +..+.
T Consensus 124 ~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDr-------g----sr~~~~~~~~~pITgL~~~~d~~s~lFv~T 191 (933)
T KOG2114|consen 124 NPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDR-------G----SRQDYSHRGKEPITGLALRSDGKSVLFVAT 191 (933)
T ss_pred CCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhcc-------c----cceeeeccCCCCceeeEEecCCceeEEEEe
Confidence 46789999999986 89999999999998864311100 0 011111334689999999999974 55556
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCC-CCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
-..|.+|.+.+. . ..+.+..+... +.|..+ ++....+++++ ...|.+|+....++...+
T Consensus 192 t~~V~~y~l~gr----------------~p~~~~ld~~G~~--lnCss~-~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 192 TEQVMLYSLSGR----------------TPSLKVLDNNGIS--LNCSSF-SDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred cceeEEEEecCC----------------CcceeeeccCCcc--ceeeec-CCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 778999998754 2 23445555544 888888 55444344443 457999998877777777
Q ss_pred e-cCccc
Q 021484 187 V-GDRHV 192 (312)
Q Consensus 187 ~-~~~~~ 192 (312)
. +|...
T Consensus 252 ~~g~kk~ 258 (933)
T KOG2114|consen 252 EVGEKKE 258 (933)
T ss_pred cCCCeEE
Confidence 6 66543
No 337
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00024 Score=61.55 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=65.5
Q ss_pred eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE-EEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN-QLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
+..+.| +|.-..+|.+..+|.|.+..++ .+.+-++.-|...++ +++|.|+|+.+|.|-.||+|++-|..++.
T Consensus 23 i~~~ew-nP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 23 IKRIEW-NPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred eEEEEE-cCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 778888 9999999999999999999988 777888887777777 99999999999999999999999998875
No 338
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.00016 Score=54.99 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=48.3
Q ss_pred CCCEEEEeccCceEEEEeccCCeeEEEeecCc-cceEEEEEcCCCCeEEEE--eCCCcEEEccCCCC
Q 021484 159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATC--GIEKTVKLWAPMPT 222 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~t~--~~d~~i~iwd~~~~ 222 (312)
++.+..+++.+|.|+.|++...+.+.....|. .++.....+-.++.++.+ |.|..++.|++...
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 45588899999999999999988887777777 566666666666666666 77777777776653
No 339
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0003 Score=57.72 Aligned_cols=84 Identities=11% Similarity=0.054 Sum_probs=68.0
Q ss_pred CCCceEecccCCceeeEEEEecCCCC-EEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe-EEEEeCCCc
Q 021484 136 EEPQVYSGHRNSQTVKGVNFFGPNDE-YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM-FATCGIEKT 213 (312)
Q Consensus 136 ~~~~~~~~~~~~~~v~~v~~~s~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~-l~t~~~d~~ 213 (312)
+..+.+.++.. .|.+++| +|..+ ++..++.+..|+|.|+++...+..+..+ ..+.+++|.-+... +..|-..|.
T Consensus 184 kssq~lp~~g~--~Irdlaf-Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 184 KSSQILPGEGS--FIRDLAF-SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred chhhcccccch--hhhhhcc-CccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 34444555554 4999999 77766 7889999999999999999888888877 68999999987765 666778999
Q ss_pred EEEccCCCCC
Q 021484 214 VKLWAPMPTD 223 (312)
Q Consensus 214 i~iwd~~~~~ 223 (312)
|.|||++..+
T Consensus 260 VlvyD~R~~~ 269 (463)
T KOG1645|consen 260 VLVYDMRQPE 269 (463)
T ss_pred EEEEEccCCC
Confidence 9999988543
No 340
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.00017 Score=64.74 Aligned_cols=108 Identities=14% Similarity=0.132 Sum_probs=83.7
Q ss_pred EEEEEccCCCeEEEe-----cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe
Q 021484 92 TGLAYSNTSELLISY-----NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 166 (312)
Q Consensus 92 ~~~~~~~~~~~l~s~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~ 166 (312)
+-..|+|...+++.+ ..|.|.||-- ++ ++.+... .+ -.+++++| +|..-.|+.|
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfad-tG----------------EPqr~Vt-~P--~hatSLCW-Hpe~~vLa~g 77 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFAD-TG----------------EPQRDVT-YP--VHATSLCW-HPEEFVLAQG 77 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEec-CC----------------CCCcccc-cc--eehhhhcc-ChHHHHHhhc
Confidence 345789988766653 2788888843 33 2322222 11 12678999 8988889999
Q ss_pred ccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484 167 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 167 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
-..|.+.+|...+.+.-.....|..+|..+.|||+|..++|+..-|.|.+|...
T Consensus 78 we~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 78 WEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred cccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 999999999998877766667899999999999999999999999999999865
No 341
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.54 E-value=0.00087 Score=60.41 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=60.1
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
+-.+++++|+|.. -.|+.|-.-|.+.+|...+.+ .......|..+|..+.||++|..+.++ .-
T Consensus 59 P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e---------------~htv~~th~a~i~~l~wS~~G~~l~t~d~~ 122 (1416)
T KOG3617|consen 59 PVHATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTE---------------THTVVETHPAPIQGLDWSHDGTVLMTLDNP 122 (1416)
T ss_pred ceehhhhccChHH-HHHhhccccceeEEEecCCce---------------eeeeccCCCCCceeEEecCCCCeEEEcCCC
Confidence 4567789999987 788889899999999988765 223336789999999999999999998 58
Q ss_pred CcEEEEEcC
Q 021484 109 ELVYLFEKN 117 (312)
Q Consensus 109 ~~i~iwd~~ 117 (312)
|.|.+|...
T Consensus 123 g~v~lwr~d 131 (1416)
T KOG3617|consen 123 GSVHLWRYD 131 (1416)
T ss_pred ceeEEEEee
Confidence 999999875
No 342
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00078 Score=58.58 Aligned_cols=93 Identities=10% Similarity=0.115 Sum_probs=73.1
Q ss_pred CccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceee-EEEEecCCCCEEEE
Q 021484 88 NIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK-GVNFFGPNDEYVMS 165 (312)
Q Consensus 88 ~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~s~~~~~l~~ 165 (312)
...+.-+.|+|.-.++|.. .+|.|.+..+. . +.+.++..+... ++ +++| .|+|+.|+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~----------------qRlwtip~p~~~--v~~sL~W-~~DGkllaV 79 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-W----------------QRLWTIPIPGEN--VTASLCW-RPDGKLLAV 79 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-c----------------ceeEeccCCCCc--cceeeee-cCCCCEEEE
Confidence 4568889999999999997 59999988886 3 466666655433 55 9999 999999999
Q ss_pred eccCceEEEEeccCCeeEEEee-cCccceEEEEEcC
Q 021484 166 GSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPHP 200 (312)
Q Consensus 166 ~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p 200 (312)
|-.||+|++.|..++..+.... .-...|.++.|.|
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999999988776632 2335677888863
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.43 E-value=0.0091 Score=54.97 Aligned_cols=71 Identities=14% Similarity=0.228 Sum_probs=56.9
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
....+|++-+.+| .||+|+.+|.||+||-- +. ..++.+.+-..+|..|..+.||+++++..+.
T Consensus 577 ~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~--------------~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 577 KNNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GK--------------RAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred CCCceEEEecCCc--eEEEEeCCCcEEeeccc-ch--------------hhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 4457788888877 89999999999999943 32 2344445668999999999999998888888
Q ss_pred cEEEEEcC
Q 021484 110 LVYLFEKN 117 (312)
Q Consensus 110 ~i~iwd~~ 117 (312)
.|.+++..
T Consensus 640 yLlLi~t~ 647 (794)
T PF08553_consen 640 YLLLIDTL 647 (794)
T ss_pred eEEEEEEe
Confidence 89888874
No 344
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.43 E-value=0.0041 Score=57.12 Aligned_cols=143 Identities=8% Similarity=0.132 Sum_probs=89.0
Q ss_pred cEEEEE-eCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC--------CCeEEEecCCcEEEE
Q 021484 44 NYFAVG-GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT--------SELLISYNDELVYLF 114 (312)
Q Consensus 44 ~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~l~s~~d~~i~iw 114 (312)
++|+.. .....|+-.|+..|+++..+..... .+|..+ .|+ ...++.-+++.++.|
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~--------------~~v~~~--~p~~K~aqlt~e~tflGls~n~lfri 557 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDD--------------IPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRI 557 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCC--------------cceeEe--cccccccccCCCceEEEECCCceEEe
Confidence 444443 4567899999999986654432221 113332 222 234555589999999
Q ss_pred EcCCCcCCCCCcCCcccccCCCCCc-eEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccce
Q 021484 115 EKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV 193 (312)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v 193 (312)
|.+-.. .+++. ............|++- ....+||+|+.+|.|++||--..+....+.+-..+|
T Consensus 558 DpR~~~--------------~k~v~~~~k~Y~~~~~Fs~~aT--t~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 558 DPRLSG--------------NKLVDSQSKQYSSKNNFSCFAT--TEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI 621 (794)
T ss_pred ccCCCC--------------CceeeccccccccCCCceEEEe--cCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence 998531 01111 0111111122667764 455578999999999999954334445566777899
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484 194 NQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 194 ~~~~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
..|..+.+|+++++.+ +..|-|++.
T Consensus 622 ~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecCCCcEEEEee-cceEEEEEE
Confidence 9999999999966655 567777774
No 345
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.39 E-value=0.00051 Score=36.37 Aligned_cols=37 Identities=32% Similarity=0.665 Sum_probs=30.9
Q ss_pred CCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEe
Q 021484 137 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 176 (312)
Q Consensus 137 ~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd 176 (312)
....+..|... +.++.| .+.++++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~--i~~~~~-~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGP--VTSVAF-SPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCc--eeEEEE-CCCCCEEEEecCCCeEEEcC
Confidence 44556667655 999999 88889999999999999996
No 346
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.35 E-value=0.00027 Score=63.83 Aligned_cols=126 Identities=16% Similarity=0.135 Sum_probs=88.1
Q ss_pred CCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC--
Q 021484 134 KREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE-- 211 (312)
Q Consensus 134 ~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d-- 211 (312)
.++..+.|..+... .++++| +...+.|+.|+..|.|++|+..+|........|..+|+.+.-+.+|..+++.+.-
T Consensus 1090 RFr~w~~frd~~~~--fTc~af-s~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETAL--FTCIAF-SGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred hcccchhhhccccc--eeeEEe-ecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC
Confidence 34556677777755 899999 8999999999999999999999999999999999999999999999986666532
Q ss_pred CcEEEccCCCC--CCCCCCCChhhhhhhhccCCCCceeEEecCCceEEEEEecccCcc
Q 021484 212 KTVKLWAPMPT--DFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQRRQTL 267 (312)
Q Consensus 212 ~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~~~~~ 267 (312)
--..+|++..- ..+++.+ -..+.++......+.++......++|+++.+.+
T Consensus 1167 PlsaLW~~~s~~~~~Hsf~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l 1219 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFDE-----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPL 1219 (1516)
T ss_pred chHHHhccccccCccccccc-----cceeehhhhHHHHHhcccccceEEEecccCcHH
Confidence 25788997652 1233321 112222222223334444455667777665443
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.33 E-value=0.036 Score=47.98 Aligned_cols=62 Identities=6% Similarity=-0.010 Sum_probs=40.7
Q ss_pred cCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484 157 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 157 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
+.+....+....++.+.+.+....+. +. ..+++..++.||+++++|.-..+|.+.+.+..-.
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 44445545555556666444332211 22 2368999999999999999999999988875443
No 348
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.31 E-value=0.022 Score=50.76 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=58.8
Q ss_pred CceEEEEeccC-----CeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCCC-------------CCCCC
Q 021484 169 CGHLFIWKKKG-----GKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDF-------------PPLPD 229 (312)
Q Consensus 169 dg~v~iwd~~~-----~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~-------------~~~~~ 229 (312)
++.|.+.|..+ .+.+..+.. ......+.++|+|+++++++ .+.+|.|.|+.+.+. ....-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev 373 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL 373 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence 35678888776 344444443 34567899999999965555 789999999887541 00100
Q ss_pred ChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 230 NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
...++ . ..+..++....|.--|+.+-.|++..
T Consensus 374 GlGPL-H-TaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 374 GLGPL-H-TAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCCcc-e-EEECCCCCEEEeEeecceeEEEehHH
Confidence 01111 1 11344566778888899999999875
No 349
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.044 Score=45.20 Aligned_cols=111 Identities=13% Similarity=0.104 Sum_probs=67.8
Q ss_pred CCCccEEEEEEccCCCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE
Q 021484 86 KNNIHITGLAYSNTSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 163 (312)
Q Consensus 86 ~~~~~i~~~~~~~~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l 163 (312)
.+-.....|+|||+++.|..+ ..+.|+-|++......... +....+... .....-.++. ..+|.+.
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~----------~~~~~~~~~-~~G~PDG~~v-DadG~lw 227 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG----------RRGFVDFDE-EPGLPDGMAV-DADGNLW 227 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC----------cceEEEccC-CCCCCCceEE-eCCCCEE
Confidence 334455689999999866555 3688888887531111000 111111111 1122445666 7788887
Q ss_pred EEeccCc-eEEEEeccCCeeEEEeecCccceEEEEE-cCCCCeEEEEe
Q 021484 164 MSGSDCG-HLFIWKKKGGKLVRLMVGDRHVVNQLEP-HPHIPMFATCG 209 (312)
Q Consensus 164 ~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~v~~~~~-~p~~~~l~t~~ 209 (312)
+++...| .|.+|+.. ++++..+......+++++| .|+.+.|...+
T Consensus 228 ~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 228 VAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 6555554 99999998 9999888877677888888 45555544333
No 350
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.30 E-value=0.001 Score=37.54 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=29.3
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH 64 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 64 (312)
+.+|.+++|+|.. .++|.|+.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCC-CEEEEEECCCeEEEEEC-CCc
Confidence 4579999999999 79999999999999999 443
No 351
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.29 E-value=0.025 Score=38.38 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=61.5
Q ss_pred EEEEEE---ccCCC--eEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021484 91 ITGLAY---SNTSE--LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 165 (312)
Q Consensus 91 i~~~~~---~~~~~--~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~ 165 (312)
|+++++ ..+|+ +|+.+.|..|++|+-. ..+..+.... .|++++- ..+..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~------------------e~~~Ei~e~~---~v~~L~~--~~~~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD------------------EIVAEITETD---KVTSLCS--LGGGRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC------------------cEEEEEeccc---ceEEEEE--cCCCEEEE
Confidence 445554 44553 5555679999999864 2444444332 2788875 34477899
Q ss_pred eccCceEEEEeccCCeeEEEeecCccceEEEEEcC-CC---CeEEEEeCCCcEEE
Q 021484 166 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHP-HI---PMFATCGIEKTVKL 216 (312)
Q Consensus 166 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p-~~---~~l~t~~~d~~i~i 216 (312)
+..+|+|-+|+-. +.+-..+.. ..+.++.+.. ++ +.|++|-.+|.|-+
T Consensus 59 ~l~NGTVGvY~~~--~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 59 ALANGTVGVYDRS--QRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred EecCCEEEEEeCc--ceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 9999999999863 223333322 3355665543 32 24888888887743
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.1 Score=44.71 Aligned_cols=157 Identities=11% Similarity=0.115 Sum_probs=103.1
Q ss_pred ceEEEEEcCCCCcEEEEEe--CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--c
Q 021484 32 RLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--N 107 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~ 107 (312)
....++++|++..+.++-. .++++.+.|..+.++... ...+. .+ ..++++|+|..+... .
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~--------------~~vG~-~P-~~~a~~p~g~~vyv~~~~ 180 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT--------------IPVGN-TP-TGVAVDPDGNKVYVTNSD 180 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE--------------EecCC-Cc-ceEEECCCCCeEEEEecC
Confidence 3567999999854444444 368888888887763211 11221 22 789999999855554 4
Q ss_pred CCcEEEEEcCCCcCCCCCcCCcccccCCCCCc-----eEecccCCceeeEEEEecCCCCEEEEeccC---ceEEEEeccC
Q 021484 108 DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-----VYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---GHLFIWKKKG 179 (312)
Q Consensus 108 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---g~v~iwd~~~ 179 (312)
++.|.+.|.... ...+ ...... ....+.+ +++++++...... +.+...|..+
T Consensus 181 ~~~v~vi~~~~~----------------~v~~~~~~~~~~~~~---~P~~i~v-~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 181 DNTVSVIDTSGN----------------SVVRGSVGSLVGVGT---GPAGIAV-DPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred CCeEEEEeCCCc----------------ceeccccccccccCC---CCceEEE-CCCCCEEEEEeccCCCceEEEEeCCC
Confidence 999999997654 2221 111111 1456777 8999977665544 5999999988
Q ss_pred CeeEEE-eecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCCC
Q 021484 180 GKLVRL-MVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDF 224 (312)
Q Consensus 180 ~~~~~~-~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~ 224 (312)
+..... +.........+..+|+|..+.... ..+.+.+-|..+..+
T Consensus 241 ~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 241 GNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred ceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 876654 221111456788999999977664 458899988877654
No 353
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.0056 Score=52.52 Aligned_cols=142 Identities=11% Similarity=0.171 Sum_probs=90.7
Q ss_pred EEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--------eEEEecCCcEEEEEc
Q 021484 45 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--------LLISYNDELVYLFEK 116 (312)
Q Consensus 45 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~l~s~~d~~i~iwd~ 116 (312)
+|.++.....++-.|++.|+++.++... .. |.-+.+.|+.+ -|+.-++..|+-||.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~---------------~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDp 411 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFE---------------DD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDP 411 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeecc---------------CC-cceeeccCCcchhcccccccEEeecCCceEEecc
Confidence 4555666778888999999866544322 22 55556666543 344457889999998
Q ss_pred CCCcCCCCCcCCcccccCCCCCceEeccc--CCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE
Q 021484 117 NMGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN 194 (312)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 194 (312)
+-.. ...+..-++|. ......|.+ .....++++|+.+|.|++||.-..+....+++...+|.
T Consensus 412 Rv~~--------------~~kl~~~q~kqy~~k~nFsc~a--TT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~ 475 (644)
T KOG2395|consen 412 RVQG--------------KNKLAVVQSKQYSTKNNFSCFA--TTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK 475 (644)
T ss_pred cccC--------------cceeeeeeccccccccccceee--ecCCceEEEeecCCcEEeehhhhhhhhhcccccCCcee
Confidence 7431 01111222221 111144554 34566899999999999999733334456677888999
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEccC
Q 021484 195 QLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 195 ~~~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
.|..+.+|++++..+ +..+.+-++
T Consensus 476 hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 476 HVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eEEeeccCcEEEEec-ccEEEEEEE
Confidence 999999999966555 556666654
No 354
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.20 E-value=0.051 Score=49.15 Aligned_cols=66 Identities=9% Similarity=0.150 Sum_probs=41.1
Q ss_pred eeEEEEecCCCCEEEEeccCceEEE---EeccCCee-E---EEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021484 150 VKGVNFFGPNDEYVMSGSDCGHLFI---WKKKGGKL-V---RLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWA 218 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~i---wd~~~~~~-~---~~~~-~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd 218 (312)
|..+.| +|+|..++... +|.|++ -....|+. + ..+. .-...+.++.|.+++.++ .+..++.-.+|.
T Consensus 450 Issl~w-SpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~ 523 (591)
T PRK13616 450 ISELQL-SRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY 523 (591)
T ss_pred cCeEEE-CCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEE
Confidence 999999 99999988765 477877 44444541 1 1122 222346889999998864 444344344444
No 355
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.18 E-value=0.0017 Score=36.72 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=30.3
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 190 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
...|..++|+|...++|.++.+|.|.++.+..++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence 3578999999999999999999999999986554
No 356
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.16 E-value=0.0077 Score=52.23 Aligned_cols=182 Identities=13% Similarity=0.065 Sum_probs=88.9
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEE-EccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484 31 IRLNAIVIDPRNPNYFAVGGSDEYARVY-DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
+.-..++|.+.+ .+|+-...++|.++ ++.... ...+.. ...+..|-. |.+|...+++
T Consensus 69 G~g~~~vw~~~n--~yAv~~~~~~I~I~kn~~~~~---------------~k~i~~--~~~~~~If~---G~LL~~~~~~ 126 (443)
T PF04053_consen 69 GSGLSFVWSSRN--RYAVLESSSTIKIYKNFKNEV---------------VKSIKL--PFSVEKIFG---GNLLGVKSSD 126 (443)
T ss_dssp EE-SEEEE-TSS--EEEEE-TTS-EEEEETTEE-T---------------T-------SS-EEEEE----SSSEEEEETT
T ss_pred CceeEEEEecCc--cEEEEECCCeEEEEEcCcccc---------------ceEEcC--CcccceEEc---CcEEEEECCC
Confidence 345567888854 57777778889996 332211 001101 112333322 8888887777
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC---------
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG--------- 180 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~--------- 180 (312)
.|.+||..++ +.++.+... .|..+.| ++++++++..+.+ .+.+++.+..
T Consensus 127 ~i~~yDw~~~----------------~~i~~i~v~----~vk~V~W-s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g 184 (443)
T PF04053_consen 127 FICFYDWETG----------------KLIRRIDVS----AVKYVIW-SDDGELVALVTKD-SIYILKYNLEAVAAIPEEG 184 (443)
T ss_dssp EEEEE-TTT------------------EEEEESS-----E-EEEEE--TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB
T ss_pred CEEEEEhhHc----------------ceeeEEecC----CCcEEEE-ECCCCEEEEEeCC-eEEEEEecchhcccccccC
Confidence 9999999887 666666532 2789998 9999999888755 6667765422
Q ss_pred --eeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCceEEE
Q 021484 181 --KLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVIMHV 258 (312)
Q Consensus 181 --~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 258 (312)
..+..+..-...|.+.+|.-+ .++-.+.. .|+. +-.++...+. +....+......+....+.....++.+..
T Consensus 185 ~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~-~ld~~~yllgy~~~~~~ly~~Dr~~~v~~ 258 (443)
T PF04053_consen 185 VEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA-HLDKPLYLLGYLPKENRLYLIDRDGNVIS 258 (443)
T ss_dssp -GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE-E-SS--EEEEEETTTTEEEEE-TT--EEE
T ss_pred chhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE-EcCCceEEEEEEccCCEEEEEECCCCEEE
Confidence 023333332568889999765 54444444 6666 3334322221 22222233333334456666667777766
Q ss_pred EEec
Q 021484 259 LRLQ 262 (312)
Q Consensus 259 ~~~~ 262 (312)
+.+.
T Consensus 259 ~~ld 262 (443)
T PF04053_consen 259 YELD 262 (443)
T ss_dssp EE--
T ss_pred EEEC
Confidence 6554
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.14 Score=43.98 Aligned_cols=194 Identities=11% Similarity=0.100 Sum_probs=118.0
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-c---C
Q 021484 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-N---D 108 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~---d 108 (312)
-..++.++.+.+.+++...+..|.+.|..+.... .....+ .....++++|+++.+..+ . +
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~--------------~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~ 139 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVL--------------GSIPVG--LGPVGLAVDPDGKYVYVANAGNGN 139 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCccccee--------------eEeeec--cCCceEEECCCCCEEEEEecccCC
Confidence 3467788888557777777799999997766522 111122 145688999999744443 2 6
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec-cCceEEEEeccCCeeEE---
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS-DCGHLFIWKKKGGKLVR--- 184 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~-~dg~v~iwd~~~~~~~~--- 184 (312)
+.+.+.|..+. +.......-. . -..+++ +|+++.++.+. .++.|.+.|........
T Consensus 140 ~~vsvid~~t~----------------~~~~~~~vG~--~-P~~~a~-~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~ 199 (381)
T COG3391 140 NTVSVIDAATN----------------KVTATIPVGN--T-PTGVAV-DPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSV 199 (381)
T ss_pred ceEEEEeCCCC----------------eEEEEEecCC--C-cceEEE-CCCCCeEEEEecCCCeEEEEeCCCcceecccc
Confidence 78888888776 4444432222 1 277888 99999766555 78999999977665543
Q ss_pred --EeecCccceEEEEEcCCCCeEEEEe-CC--CcEEEccCCCCCCCCC--CCChhhhhhhhccCCCCceeEEe-cCCceE
Q 021484 185 --LMVGDRHVVNQLEPHPHIPMFATCG-IE--KTVKLWAPMPTDFPPL--PDNAEKIMKANKQGREDHSRITL-TPDVIM 256 (312)
Q Consensus 185 --~~~~~~~~v~~~~~~p~~~~l~t~~-~d--~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i 256 (312)
....+ .....+.++|++..+.... .+ +.+...|..++..... ..... ........+++...... ...+.+
T Consensus 200 ~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V 277 (381)
T COG3391 200 GSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTV 277 (381)
T ss_pred ccccccC-CCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeE
Confidence 12222 2345788999999754443 33 5888888887764222 21111 11122244554444443 444677
Q ss_pred EEEEeccc
Q 021484 257 HVLRLQRR 264 (312)
Q Consensus 257 ~i~~~~~~ 264 (312)
.+.|....
T Consensus 278 ~vid~~~~ 285 (381)
T COG3391 278 SVIDGATD 285 (381)
T ss_pred EEEeCCCC
Confidence 77765443
No 358
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.13 E-value=0.063 Score=43.74 Aligned_cols=159 Identities=16% Similarity=0.078 Sum_probs=88.8
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 123 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 123 (312)
+.|+.|+.+| +.+++..... .... ..+...|..+...++-..|+.-.|+.++++++..-....
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~--------------~~~~--i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPS--------------KPTR--ILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVS 70 (275)
T ss_pred CEEEEEECCC-EEEEEecCCc--------------ccee--EeecceEEEEEEecccCEEEEEcCCccEEEEchhhcccc
Confidence 6889999888 8999983221 1111 112334899999998888888778999999997642111
Q ss_pred CCcCCcccccCCCCCceEecccCCceeeEEE-EecCCCCEEEEeccCceEEEEeccCC-----eeEEEeecCccceEEEE
Q 021484 124 PLSLSPEDLQKREEPQVYSGHRNSQTVKGVN-FFGPNDEYVMSGSDCGHLFIWKKKGG-----KLVRLMVGDRHVVNQLE 197 (312)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~-~~s~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~v~~~~ 197 (312)
... +....+.......+. .. +.+...+ -....+...++.....+|.+|.+... +..+.+.. ...+..++
T Consensus 71 ~~~-~~~~~~~~~~~~~~~-~~--~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~ 145 (275)
T PF00780_consen 71 TSA-PLAFPKSRSLPTKLP-ET--KGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIA 145 (275)
T ss_pred ccc-ccccccccccccccc-cc--CCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-CCCcEEEE
Confidence 000 000000000000111 11 1133333 10234444455555669999887653 34455543 36788999
Q ss_pred EcCCCCeEEEEeCCCcEEEccCCCCCCCCC
Q 021484 198 PHPHIPMFATCGIEKTVKLWAPMPTDFPPL 227 (312)
Q Consensus 198 ~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~ 227 (312)
|. ++.++.+. .+...+.|+.++....+
T Consensus 146 ~~--~~~i~v~~-~~~f~~idl~~~~~~~l 172 (275)
T PF00780_consen 146 FL--GNKICVGT-SKGFYLIDLNTGSPSEL 172 (275)
T ss_pred Ee--CCEEEEEe-CCceEEEecCCCCceEE
Confidence 97 55666665 45688888887654433
No 359
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.0021 Score=59.51 Aligned_cols=99 Identities=14% Similarity=0.254 Sum_probs=71.2
Q ss_pred CCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc
Q 021484 100 SELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK 178 (312)
Q Consensus 100 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~ 178 (312)
+..++.+ +.|.+-..|.... ......+.....+|++++| +.+|..++.|-.+|.|.+||+.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-----------------L~~~~~ne~v~~~Vtsvaf-n~dg~~l~~G~~~G~V~v~D~~ 160 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-----------------LGPLHQNERVQGPVTSVAF-NQDGSLLLAGLGDGHVTVWDMH 160 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-----------------cchhhcCCccCCcceeeEe-cCCCceeccccCCCcEEEEEcc
Confidence 3345555 5788888887653 2212233333356999999 9999999999999999999999
Q ss_pred CCeeEEEeecCccceEEEE---EcCCCCeEEEEeCCCcEEEcc
Q 021484 179 GGKLVRLMVGDRHVVNQLE---PHPHIPMFATCGIEKTVKLWA 218 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~---~~p~~~~l~t~~~d~~i~iwd 218 (312)
.++.++.+..|..+.+.+- +..++..++++..-|. +|.
T Consensus 161 ~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 161 RAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred CCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 9999988887776655544 4455566777776675 554
No 360
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.11 E-value=0.15 Score=43.84 Aligned_cols=173 Identities=11% Similarity=0.044 Sum_probs=87.4
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-----CCC---
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-----TSE--- 101 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~--- 101 (312)
.++|++++.|.-| ++|.|..+|.+.|.|++...++.... +.. ..........++++.|+. |+.
T Consensus 86 ~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~----i~~---~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 86 QGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNEN----IRE---SFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEE----GGG-----T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred CCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeecc----ccc---cccccccccCeeEEEEEEEecCCCcccce
Confidence 6789999999777 99999999999999998776542210 000 001123456688888863 331
Q ss_pred eEEE-ecCCcEEEEEcCC-CcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-C------------------
Q 021484 102 LLIS-YNDELVYLFEKNM-GLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-D------------------ 160 (312)
Q Consensus 102 ~l~s-~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~------------------ 160 (312)
.+.. .+.|.+.+|.+.- ..+. +. .+.......+.. .+..+..++.+ |
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~----f~------v~~~~~~~~~~~--~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~ 224 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGR----FS------VQFAGATTNHDS--PILSIIPINADTGESALATISAMQGLSKGIS 224 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-----EE------EEEEEEE--SS------EEEEEETTT--B-B-BHHHHHGGGGT--
T ss_pred EEEEEeCCCCEEEEEEecCCCCc----eE------EEEeeccccCCC--ceEEEEEEECCCCCcccCchhHhhccccCCC
Confidence 4444 4689999998752 1000 00 000001111221 23333321111 1
Q ss_pred -CEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEc-----CCCCeEEEEeCCCcEEEccCCCCC
Q 021484 161 -EYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH-----PHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 161 -~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-----p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
+-++....+..++++...+.+..............+.+- ..+..|+.-..+|.|+++.+-.-+
T Consensus 225 i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 225 IPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp --EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred cCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 123333447789999988777655544222233344442 244558888899999999987754
No 361
>PHA02713 hypothetical protein; Provisional
Probab=97.07 E-value=0.049 Score=49.19 Aligned_cols=92 Identities=3% Similarity=0.027 Sum_probs=46.2
Q ss_pred eEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC------CcEEEccCCC-CCCCCCCCChhhhhhhhccCCC
Q 021484 171 HLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE------KTVKLWAPMP-TDFPPLPDNAEKIMKANKQGRE 243 (312)
Q Consensus 171 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d------~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
.+..||..+.+....-.-.......-...-++++.+.|+.+ ..+..||+.+ .+...+..-............+
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~ 512 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILHD 512 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEEC
Confidence 47778887765432111111111111112256777777654 2467899998 5654333222222222223336
Q ss_pred CceeEEecCCc--eEEEEEec
Q 021484 244 DHSRITLTPDV--IMHVLRLQ 262 (312)
Q Consensus 244 ~~~l~s~~~d~--~i~i~~~~ 262 (312)
+.+.+.|+.++ .+..+|..
T Consensus 513 ~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 513 NTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred CEEEEEeeecceeehhhcCcc
Confidence 67778888777 44455543
No 362
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.01 E-value=0.083 Score=40.86 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=67.3
Q ss_pred EEEEEEccCCCeEEE--ecCCcEEEEE--cCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe
Q 021484 91 ITGLAYSNTSELLIS--YNDELVYLFE--KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 166 (312)
Q Consensus 91 i~~~~~~~~~~~l~s--~~d~~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~ 166 (312)
-..++|+.+.+.+.. +.+-.|.-|| ..++...+. -.+.++.+. +.+. +. ..-.++. +.+|++.+++
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr--~~i~dlrk~---~~~e-~~---~PDGm~I-D~eG~L~Va~ 229 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNR--KVIFDLRKS---QPFE-SL---EPDGMTI-DTEGNLYVAT 229 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCc--ceeEEeccC---CCcC-CC---CCCcceE-ccCCcEEEEE
Confidence 347899988774444 3477787777 555421111 111111111 1111 11 1234555 6789999999
Q ss_pred ccCceEEEEeccCCeeEEEeecCccceEEEEEc-CCCCeEEE
Q 021484 167 SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH-PHIPMFAT 207 (312)
Q Consensus 167 ~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-p~~~~l~t 207 (312)
-..++|...|..+|+.+.+++.....|++++|- |+-..|.+
T Consensus 230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence 999999999999999999999889999999994 33344433
No 363
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.0061 Score=56.58 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=70.5
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP 122 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 122 (312)
-.++.|++.|.+...|+...- ++...-..-..+|++++|+.+|.+++.| .+|.|.+||...+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL--------------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~--- 162 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNL--------------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA--- 162 (1206)
T ss_pred eeEEEEcCchhhhhhhhhccc--------------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---
Confidence 468888888999888876421 2111113346889999999999988888 7999999999987
Q ss_pred CCCcCCcccccCCCCCceEecccCCc-eeeEEEEecCCCCEEEEeccCceEEEEe
Q 021484 123 SPLSLSPEDLQKREEPQVYSGHRNSQ-TVKGVNFFGPNDEYVMSGSDCGHLFIWK 176 (312)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~s~~~~~l~~~~~dg~v~iwd 176 (312)
+..+.+..+..+. .|..+.+ ...+..++++...|. +|.
T Consensus 163 -------------k~l~~i~e~~ap~t~vi~v~~-t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 163 -------------KILKVITEHGAPVTGVIFVGR-TSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred -------------cceeeeeecCCccceEEEEEE-eCCCcEEEEccCCCc--eEE
Confidence 6777776555431 2445555 445557888887776 454
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.88 E-value=0.14 Score=42.89 Aligned_cols=153 Identities=15% Similarity=0.201 Sum_probs=83.8
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe-ecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH-WYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY- 106 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~- 106 (312)
.+++|++++-- ++ . |+++. .+.|.+|++...+ +. .... ......+.++... +.+++.+
T Consensus 87 ~~g~V~ai~~~-~~-~-lv~~~-g~~l~v~~l~~~~~l~-------------~~~~-~~~~~~i~sl~~~--~~~I~vgD 146 (321)
T PF03178_consen 87 VKGPVTAICSF-NG-R-LVVAV-GNKLYVYDLDNSKTLL-------------KKAF-YDSPFYITSLSVF--KNYILVGD 146 (321)
T ss_dssp ESS-EEEEEEE-TT-E-EEEEE-TTEEEEEEEETTSSEE-------------EEEE-E-BSSSEEEEEEE--TTEEEEEE
T ss_pred ecCcceEhhhh-CC-E-EEEee-cCEEEEEEccCcccch-------------hhhe-ecceEEEEEEecc--ccEEEEEE
Confidence 36788888866 34 4 44433 4899999998775 32 1111 1112356666554 4466666
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccC-------
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKG------- 179 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~------- 179 (312)
....+.++...... ..+..+........++++.|. ++++.++.+..+|.+.++....
T Consensus 147 ~~~sv~~~~~~~~~---------------~~l~~va~d~~~~~v~~~~~l-~d~~~~i~~D~~gnl~~l~~~~~~~~~~~ 210 (321)
T PF03178_consen 147 AMKSVSLLRYDEEN---------------NKLILVARDYQPRWVTAAEFL-VDEDTIIVGDKDGNLFVLRYNPEIPNSRD 210 (321)
T ss_dssp SSSSEEEEEEETTT---------------E-EEEEEEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-SSTTT
T ss_pred cccCEEEEEEEccC---------------CEEEEEEecCCCccEEEEEEe-cCCcEEEEEcCCCeEEEEEECCCCccccc
Confidence 46666666443210 223333333333558888884 3446899999999999998652
Q ss_pred C--ee--EEEeecCccceEEE---EEcCC--CC------eEEEEeCCCcEEEcc
Q 021484 180 G--KL--VRLMVGDRHVVNQL---EPHPH--IP------MFATCGIEKTVKLWA 218 (312)
Q Consensus 180 ~--~~--~~~~~~~~~~v~~~---~~~p~--~~------~l~t~~~d~~i~iwd 218 (312)
+ +. ...+. ....|+++ ++.|. +. .++.++.+|.|...-
T Consensus 211 ~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 211 GDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp TTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred ccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 2 22 22222 23567777 55552 22 377888899988443
No 365
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.82 E-value=0.22 Score=41.18 Aligned_cols=159 Identities=9% Similarity=-0.030 Sum_probs=89.4
Q ss_pred EEEEEcCCCCcEEEEE----------eCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE
Q 021484 34 NAIVIDPRNPNYFAVG----------GSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL 103 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 103 (312)
-.+..+|++ +.++++ -..-.|.+||..+.....++..+..-+. . .. .....++++.+++++
T Consensus 39 ~~~~~spdg-k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~-----~-~~--~~~~~~~ls~dgk~~ 109 (342)
T PF06433_consen 39 GNVALSPDG-KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA-----Q-VV--PYKNMFALSADGKFL 109 (342)
T ss_dssp EEEEE-TTS-SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--------BS----GGGEEE-TTSSEE
T ss_pred CceeECCCC-CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh-----e-ec--ccccceEEccCCcEE
Confidence 346788998 566553 2345699999998875443322211000 0 00 112245788999866
Q ss_pred EEe--c-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc-C
Q 021484 104 ISY--N-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK-G 179 (312)
Q Consensus 104 ~s~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~-~ 179 (312)
... . ...|.|.|+..+ +.+..+.... +...| +...+-+.+-+.||.+.-..+. .
T Consensus 110 ~V~N~TPa~SVtVVDl~~~----------------kvv~ei~~PG-----C~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 110 YVQNFTPATSVTVVDLAAK----------------KVVGEIDTPG-----CWLIY-PSGNRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp EEEEESSSEEEEEEETTTT----------------EEEEEEEGTS-----EEEEE-EEETTEEEEEETTSCEEEEEETST
T ss_pred EEEccCCCCeEEEEECCCC----------------ceeeeecCCC-----EEEEE-ecCCCceEEEecCCceEEEEECCC
Confidence 664 3 778999999876 5555444222 22334 3334557788889999988887 5
Q ss_pred CeeEEEee----cCccc-eEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 180 GKLVRLMV----GDRHV-VNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 180 ~~~~~~~~----~~~~~-v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
|+...... ....+ +..-++...+..++-.+.+|.|+--|+....
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 65542221 11122 2233444455555557788999988887765
No 366
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.64 E-value=0.4 Score=43.52 Aligned_cols=185 Identities=11% Similarity=0.080 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCcEEEEEeCC------CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 33 LNAIVIDPRNPNYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
-.+++... + .++++|+.| .++..||..+.++....+ ... ..+.-.+..+ +|.+.|.|
T Consensus 325 ~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~----------M~~-~R~~~~v~~l----~g~iYavG 387 (571)
T KOG4441|consen 325 RVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAP----------MNT-KRSDFGVAVL----DGKLYAVG 387 (571)
T ss_pred cccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCceeccCC----------ccC-ccccceeEEE----CCEEEEEe
Confidence 44555554 3 688999988 457788888777542210 000 1112222222 56655554
Q ss_pred -cCCc-----EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc------eEEE
Q 021484 107 -NDEL-----VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG------HLFI 174 (312)
Q Consensus 107 -~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg------~v~i 174 (312)
.||. +-.||..+.. +.....+...... ...+ .-+|...++|+.++ .+..
T Consensus 388 G~dg~~~l~svE~YDp~~~~--------------W~~va~m~~~r~~--~gv~---~~~g~iYi~GG~~~~~~~l~sve~ 448 (571)
T KOG4441|consen 388 GFDGEKSLNSVECYDPVTNK--------------WTPVAPMLTRRSG--HGVA---VLGGKLYIIGGGDGSSNCLNSVEC 448 (571)
T ss_pred ccccccccccEEEecCCCCc--------------ccccCCCCcceee--eEEE---EECCEEEEEcCcCCCccccceEEE
Confidence 4654 6677776541 1222212211111 2222 23677788888544 5778
Q ss_pred EeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCCC-----cEEEccCCCCCCCCCCCChhhhhhhhccCCCCcee
Q 021484 175 WKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSR 247 (312)
Q Consensus 175 wd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~t~~~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 247 (312)
||..+++... .+..-..... ++ .-++.+.+.||.|+ +|..||+.+.....+...............++...
T Consensus 449 YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly 526 (571)
T KOG4441|consen 449 YDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLY 526 (571)
T ss_pred EcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEE
Confidence 8887765432 2221111111 21 22667788888776 37789998887654432222221111122355666
Q ss_pred EEecCCce
Q 021484 248 ITLTPDVI 255 (312)
Q Consensus 248 ~s~~~d~~ 255 (312)
+.|+.|+.
T Consensus 527 ~vGG~~~~ 534 (571)
T KOG4441|consen 527 AVGGFDGN 534 (571)
T ss_pred EEecccCc
Confidence 77776643
No 367
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.63 E-value=0.41 Score=41.66 Aligned_cols=159 Identities=12% Similarity=0.202 Sum_probs=82.2
Q ss_pred ceEEEEEcCCCCcEEEEE-eCCC----eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-
Q 021484 32 RLNAIVIDPRNPNYFAVG-GSDE----YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS- 105 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s- 105 (312)
.+..++++|++ +++|.+ +..| .++++|+.+++.. ...+ .. .....+.|.++++.|+.
T Consensus 125 ~~~~~~~Spdg-~~la~~~s~~G~e~~~l~v~Dl~tg~~l-------------~d~i-~~--~~~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 125 SLGGFSVSPDG-KRLAYSLSDGGSEWYTLRVFDLETGKFL-------------PDGI-EN--PKFSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEEETTTS-SEEEEEEEETTSSEEEEEEEETTTTEEE-------------EEEE-EE--EESEEEEECTTSSEEEEE
T ss_pred EeeeeeECCCC-CEEEEEecCCCCceEEEEEEECCCCcCc-------------CCcc-cc--cccceEEEeCCCCEEEEE
Confidence 44578899999 555543 4444 4999999998732 1111 11 11223999999885444
Q ss_pred ec-C----------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---C-c
Q 021484 106 YN-D----------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---C-G 170 (312)
Q Consensus 106 ~~-d----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---d-g 170 (312)
.. + ..|+.|.+.+... .-...+...........+.. ++++++|+.... + .
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~--------------~d~lvfe~~~~~~~~~~~~~-s~d~~~l~i~~~~~~~~s 252 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQS--------------EDELVFEEPDEPFWFVSVSR-SKDGRYLFISSSSGTSES 252 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GG--------------G-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEE
T ss_pred EeCcccccccCCCCcEEEEEECCCChH--------------hCeeEEeecCCCcEEEEEEe-cCcccEEEEEEEccccCC
Confidence 32 2 1378888876510 11234444433211456776 899999775432 3 4
Q ss_pred eEEEEeccCC----eeEEEeecCccce-EEEEEcCCCCeEEEEe---CCCcEEEccCCCCC
Q 021484 171 HLFIWKKKGG----KLVRLMVGDRHVV-NQLEPHPHIPMFATCG---IEKTVKLWAPMPTD 223 (312)
Q Consensus 171 ~v~iwd~~~~----~~~~~~~~~~~~v-~~~~~~p~~~~l~t~~---~d~~i~iwd~~~~~ 223 (312)
.+++.++..+ .....+......+ ..+... .+.+++... ..+.|.-.++....
T Consensus 253 ~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 253 EVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp EEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred eEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccc
Confidence 5788888764 2233333333333 334333 444443332 23455555555543
No 368
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.49 E-value=0.19 Score=45.50 Aligned_cols=218 Identities=13% Similarity=0.087 Sum_probs=108.4
Q ss_pred cEEEEEeCC------CeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC------Cc
Q 021484 44 NYFAVGGSD------EYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND------EL 110 (312)
Q Consensus 44 ~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d------~~ 110 (312)
.+++.|+.+ ..+..||..++++...... . ....-.+++.. ++.+.++| .+ ..
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-------------~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ 350 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-------------P-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSS 350 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCC-------------C-cccccccEEEE-CCEEEEEccccCCCcccce
Confidence 688888877 4688899888764322110 0 11112233333 34555554 46 24
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCce-----EEEEeccCCeeE--
Q 021484 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGH-----LFIWKKKGGKLV-- 183 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~-----v~iwd~~~~~~~-- 183 (312)
+..||...+. +.....+...... .+++ .-+|...++|+.||. +-.||..+.+.-
T Consensus 351 ve~YD~~~~~--------------W~~~a~M~~~R~~---~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v 411 (571)
T KOG4441|consen 351 VERYDPRTNQ--------------WTPVAPMNTKRSD---FGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV 411 (571)
T ss_pred EEEecCCCCc--------------eeccCCccCcccc---ceeE--EECCEEEEEeccccccccccEEEecCCCCccccc
Confidence 6788876641 1222222222221 2222 246888889998874 677887765432
Q ss_pred EEeecCccceEEEEEcCCCCeEEEEeCCC------cEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCCce--
Q 021484 184 RLMVGDRHVVNQLEPHPHIPMFATCGIEK------TVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPDVI-- 255 (312)
Q Consensus 184 ~~~~~~~~~v~~~~~~p~~~~l~t~~~d~------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~-- 255 (312)
..+.........+.+ +|.+.++||.++ ++..||+.+......+.-...-........++.+.+.|+.++.
T Consensus 412 a~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~ 489 (571)
T KOG4441|consen 412 APMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSA 489 (571)
T ss_pred CCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCc
Confidence 222111122222223 777888887553 5788999988764443222211111112235667777777652
Q ss_pred ---EEEEEecccCccceeE-eecCCCccCCCCCCCeEEEeecCCCCC
Q 021484 256 ---MHVLRLQRRQTLAYRE-RRYNAADFESDEEEGETYLLGFSDSDA 298 (312)
Q Consensus 256 ---i~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~ 298 (312)
+..+|..+. ...... -............++.+|+++..++..
T Consensus 490 ~~~VE~ydp~~~-~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~ 535 (571)
T KOG4441|consen 490 LSSVERYDPETN-QWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNN 535 (571)
T ss_pred cceEEEEcCCCC-ceeEcccCccccccccEEEECCEEEEEecccCcc
Confidence 444553332 221111 111111111123455689998766543
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.45 E-value=0.11 Score=47.07 Aligned_cols=102 Identities=17% Similarity=0.068 Sum_probs=60.9
Q ss_pred ccEEEEEEccCCCeEEEec-------CC--cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC
Q 021484 89 IHITGLAYSNTSELLISYN-------DE--LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN 159 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~-------d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~ 159 (312)
..+.+.+.+|+|+.++... |. .|.+++... .......+. ..+.-.| +|+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-----------------~~~~lt~g~----~~t~PsW-spD 407 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-----------------VAVQVLEGH----SLTRPSW-SLD 407 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-----------------cceeeecCC----CCCCceE-CCC
Confidence 4577889999998665532 33 355555422 222222222 1677788 899
Q ss_pred CCEEEEeccC------------ceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484 160 DEYVMSGSDC------------GHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 160 ~~~l~~~~~d------------g~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~i 216 (312)
|..|++.... +.+.+.++..++... ...+.|..+.|||+|..++... ++.|.+
T Consensus 408 G~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 408 ADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 8877766533 233333333333222 2245799999999999877665 577777
No 370
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.43 E-value=0.36 Score=38.70 Aligned_cols=156 Identities=12% Similarity=0.170 Sum_probs=87.8
Q ss_pred EEEcCCCCcEEEEEeC-----CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCc
Q 021484 36 IVIDPRNPNYFAVGGS-----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL 110 (312)
Q Consensus 36 ~~~~p~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~ 110 (312)
-.|||+| .+|+..-. -|.|=+||.+.+- ..+.++ ..|.-....+.|.+||+.++..+.|.
T Consensus 119 Gvfs~dG-~~LYATEndfd~~rGViGvYd~r~~f--------qrvgE~------~t~GiGpHev~lm~DGrtlvvanGGI 183 (366)
T COG3490 119 GVFSPDG-RLLYATENDFDPNRGVIGVYDAREGF--------QRVGEF------STHGIGPHEVTLMADGRTLVVANGGI 183 (366)
T ss_pred cccCCCC-cEEEeecCCCCCCCceEEEEeccccc--------ceeccc------ccCCcCcceeEEecCCcEEEEeCCce
Confidence 4689999 66666533 3789999998542 122222 55666677899999999777754321
Q ss_pred -------------------EEEEEcCCCcCCCCCcCCcccccCCCCCce--Ee--cccCCceeeEEEEecCCCCEEEEec
Q 021484 111 -------------------VYLFEKNMGLGPSPLSLSPEDLQKREEPQV--YS--GHRNSQTVKGVNFFGPNDEYVMSGS 167 (312)
Q Consensus 111 -------------------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~~v~~~s~~~~~l~~~~ 167 (312)
+.+.|..++ .++.. +. .+. ..+..++. .++|..++.+-
T Consensus 184 ethpdfgR~~lNldsMePSlvlld~atG----------------~liekh~Lp~~l~~--lSiRHld~-g~dgtvwfgcQ 244 (366)
T COG3490 184 ETHPDFGRTELNLDSMEPSLVLLDAATG----------------NLIEKHTLPASLRQ--LSIRHLDI-GRDGTVWFGCQ 244 (366)
T ss_pred ecccccCccccchhhcCccEEEEecccc----------------chhhhccCchhhhh--cceeeeee-CCCCcEEEEEE
Confidence 222222222 22211 11 122 22777776 77777666554
Q ss_pred cCce-----EEEEeccCCeeEEEeec-------CccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCCCCC
Q 021484 168 DCGH-----LFIWKKKGGKLVRLMVG-------DRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPTDFP 225 (312)
Q Consensus 168 ~dg~-----v~iwd~~~~~~~~~~~~-------~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~~~~ 225 (312)
..|. -.+=....++++..+.. ....|-+++.+.+...++..+ ..+..-+||..++.+.
T Consensus 245 y~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv 315 (366)
T COG3490 245 YRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV 315 (366)
T ss_pred eeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence 3322 11222233444444432 123466788877666655555 5556788999999763
No 371
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.43 E-value=0.63 Score=41.51 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=43.3
Q ss_pred cCCCCEEEEeccCc------------------eEEEEeccCCeeEEEeecCccceE------EEEEc----CCCC---eE
Q 021484 157 GPNDEYVMSGSDCG------------------HLFIWKKKGGKLVRLMVGDRHVVN------QLEPH----PHIP---MF 205 (312)
Q Consensus 157 s~~~~~l~~~~~dg------------------~v~iwd~~~~~~~~~~~~~~~~v~------~~~~~----p~~~---~l 205 (312)
++.+..++.++.++ .|.-+|..+|+.+-.++.-..... ...+. -++. .+
T Consensus 225 d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V 304 (488)
T cd00216 225 DPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAI 304 (488)
T ss_pred eCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEE
Confidence 45566777777655 799999999998766542111110 01111 1232 57
Q ss_pred EEEeCCCcEEEccCCCCCC
Q 021484 206 ATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 206 ~t~~~d~~i~iwd~~~~~~ 224 (312)
+.++.+|.+...|.++++.
T Consensus 305 ~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 305 VHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred EEECCCceEEEEECCCCcE
Confidence 7788899999999988863
No 372
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.42 E-value=0.029 Score=47.59 Aligned_cols=102 Identities=13% Similarity=0.098 Sum_probs=61.4
Q ss_pred cCCCCEEEEec---------cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC
Q 021484 157 GPNDEYVMSGS---------DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL 227 (312)
Q Consensus 157 s~~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~ 227 (312)
||++++++... ..+.+.++|+.+++....... ...+....|+|+|+.++... ++.|.+++..++....+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 46777766632 356799999998765443332 56788999999999988886 68999999876543222
Q ss_pred C--C-------Chh-----h---hhhhhccCCCCceeEEecCC-ceEEEEE
Q 021484 228 P--D-------NAE-----K---IMKANKQGREDHSRITLTPD-VIMHVLR 260 (312)
Q Consensus 228 ~--~-------~~~-----~---~~~~~~~~~~~~~l~s~~~d-~~i~i~~ 260 (312)
. + ... . .....+|++++..++....| ..++.+.
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~ 129 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYP 129 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEE
Confidence 1 1 111 1 12344677877777665544 4444443
No 373
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.39 E-value=0.0044 Score=47.37 Aligned_cols=106 Identities=7% Similarity=0.049 Sum_probs=59.9
Q ss_pred CCCCEEEEeccCceEEEEeccC-CeeEEEeecCccceEEE-EEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChh-hh
Q 021484 158 PNDEYVMSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQL-EPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAE-KI 234 (312)
Q Consensus 158 ~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~-~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~-~~ 234 (312)
..+.-+++|+.+|.|.+|.... +.....+......|.++ .--.++.+..+++.|+.||.|++...+.....++.. .-
T Consensus 68 ~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 68 TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred ccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 3467789999999999998762 22111111122233322 223345578888999999999998877544333333 11
Q ss_pred hhhhccCCCCceeEEe--cCCceEEEEEecc
Q 021484 235 MKANKQGREDHSRITL--TPDVIMHVLRLQR 263 (312)
Q Consensus 235 ~~~~~~~~~~~~l~s~--~~d~~i~i~~~~~ 263 (312)
..........+++... +.|..++.|++..
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchhh
Confidence 1111122233444444 5666666666543
No 374
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.36 E-value=0.23 Score=39.19 Aligned_cols=65 Identities=14% Similarity=0.074 Sum_probs=52.2
Q ss_pred CCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 159 NDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
-|.+++.|+..|.+++.+.++|..+..+..-..-=......+++..+..++.|++.+..|+++..
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 47889999999999999999998777665433221234567899999999999999999998765
No 375
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.34 E-value=0.22 Score=45.04 Aligned_cols=110 Identities=6% Similarity=0.131 Sum_probs=70.8
Q ss_pred EEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE-ecCCCCEEEEecc
Q 021484 91 ITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMSGSD 168 (312)
Q Consensus 91 i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-~s~~~~~l~~~~~ 168 (312)
+.-+.-+.-++..+.. +...+.|||.+.+ ..... ........|.++.| +.|+++.+++.+.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~----------------~lE~~-~~f~~~~~I~dLDWtst~d~qsiLaVGf 94 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSG----------------VLEYE-ESFSEDDPIRDLDWTSTPDGQSILAVGF 94 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCc----------------EEEEe-eeecCCCceeeceeeecCCCCEEEEEEc
Confidence 3444445555544444 4668999999876 21111 11112244899998 4678999999999
Q ss_pred CceEEEEecc---------CCeeEEEe--ecCc-cceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484 169 CGHLFIWKKK---------GGKLVRLM--VGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 169 dg~v~iwd~~---------~~~~~~~~--~~~~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
.+.|.++.-. +..++..+ ..|+ .+|.+..|.++|..++.++ ..+.|++-
T Consensus 95 ~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 95 PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 9999998631 11233333 3444 6899999999998876664 67888774
No 376
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.31 E-value=0.02 Score=48.61 Aligned_cols=93 Identities=13% Similarity=0.194 Sum_probs=56.6
Q ss_pred ccCCCeEEE----------ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEe
Q 021484 97 SNTSELLIS----------YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSG 166 (312)
Q Consensus 97 ~~~~~~l~s----------~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~ 166 (312)
|||+++++. +..+.+.+||+.++ ....+..... .+....| +|+|+.++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~-----------------~~~~l~~~~~--~~~~~~~-sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETG-----------------EITPLTPPPP--KLQDAKW-SPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT-----------------EEEESS-EET--TBSEEEE--SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCC-----------------ceEECcCCcc--cccccee-ecCCCeeEEE
Confidence 577775554 22456899999876 2222222232 3788888 9999999877
Q ss_pred ccCceEEEEeccCCeeEEEe-ecC----------------ccceEEEEEcCCCCeEEEEeC
Q 021484 167 SDCGHLFIWKKKGGKLVRLM-VGD----------------RHVVNQLEPHPHIPMFATCGI 210 (312)
Q Consensus 167 ~~dg~v~iwd~~~~~~~~~~-~~~----------------~~~v~~~~~~p~~~~l~t~~~ 210 (312)
. ++.|++.+..+++..+.- .+. -+.-..+-|||++++||..-.
T Consensus 61 ~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp E-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred e-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 5 689999998877543211 110 012245789999999877653
No 377
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.30 E-value=0.22 Score=41.00 Aligned_cols=155 Identities=15% Similarity=0.197 Sum_probs=78.3
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDE 109 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~ 109 (312)
...+..+.-++++ ++++++..-....-|+...... .+.. ......|..+.|.|++.+.+.+..|
T Consensus 144 ~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w-------------~~~~--r~~~~riq~~gf~~~~~lw~~~~Gg 207 (302)
T PF14870_consen 144 SGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTW-------------QPHN--RNSSRRIQSMGFSPDGNLWMLARGG 207 (302)
T ss_dssp ---EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS--------------EEEE----SSS-EEEEEE-TTS-EEEEETTT
T ss_pred cceeEeEEECCCC-cEEEEECcccEEEEecCCCccc-------------eEEc--cCccceehhceecCCCCEEEEeCCc
Confidence 4568888888988 7777776655555677543221 1111 2235789999999999877777888
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee--
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-- 187 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-- 187 (312)
.|+.=+..... .+... .........-.+..++| .+++...++|+ .|.+ +...+.|+.-...+
T Consensus 208 ~~~~s~~~~~~------------~~w~~-~~~~~~~~~~~~ld~a~-~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 208 QIQFSDDPDDG------------ETWSE-PIIPIKTNGYGILDLAY-RPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVG 271 (302)
T ss_dssp EEEEEE-TTEE------------EEE----B-TTSS--S-EEEEEE-SSSS-EEEEES-TT-E-EEESSTTSS-EE-GGG
T ss_pred EEEEccCCCCc------------ccccc-ccCCcccCceeeEEEEe-cCCCCEEEEeC-CccE-EEeCCCCccceECccc
Confidence 88887722110 00000 00111111112889999 77777766665 4444 45556666544433
Q ss_pred -cCccceEEEEEcCCCCeEEEEeCCCcEEEc
Q 021484 188 -GDRHVVNQLEPHPHIPMFATCGIEKTVKLW 217 (312)
Q Consensus 188 -~~~~~v~~~~~~p~~~~l~t~~~d~~i~iw 217 (312)
.-...++.+.|.+..+-++.| .+|.|-=|
T Consensus 272 ~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 272 ENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp TTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred cCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 223467889997665666665 57776544
No 378
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.20 E-value=0.48 Score=37.84 Aligned_cols=156 Identities=10% Similarity=0.105 Sum_probs=89.0
Q ss_pred cceEEEEEcCCCCcEEEEEeCCC--eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecC
Q 021484 31 IRLNAIVIDPRNPNYFAVGGSDE--YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND 108 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d 108 (312)
.-...+.|..++ .++-+.+.-| .|+.+|+.+++...... + ....---.++...+.-+..+-.+
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~------------l--~~~~FgEGit~~~d~l~qLTWk~ 109 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVP------------L--PPRYFGEGITILGDKLYQLTWKE 109 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE---------------TTT--EEEEEEETTEEEEEESSS
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEE------------C--CccccceeEEEECCEEEEEEecC
Confidence 345578886666 6777766655 79999999987432111 0 00111223444433334555579
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
+...+||..+- +.+..+.-... =..++. +++.|+.......|+++|..+.+....+..
T Consensus 110 ~~~f~yd~~tl----------------~~~~~~~y~~E---GWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V 167 (264)
T PF05096_consen 110 GTGFVYDPNTL----------------KKIGTFPYPGE---GWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQV 167 (264)
T ss_dssp SEEEEEETTTT----------------EEEEEEE-SSS-----EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred CeEEEEccccc----------------eEEEEEecCCc---ceEEEc---CCCEEEEECCccceEEECCcccceEEEEEE
Confidence 99999999876 56666654432 466764 567777777788999999988777666542
Q ss_pred C--c---cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484 189 D--R---HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 189 ~--~---~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
. . ..++.+.|. +|...|=.=....|..-|+.++.+
T Consensus 168 ~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V 207 (264)
T PF05096_consen 168 TDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKV 207 (264)
T ss_dssp EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BE
T ss_pred EECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeE
Confidence 2 1 234556665 444444444555666667666653
No 379
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.20 E-value=0.85 Score=40.67 Aligned_cols=193 Identities=10% Similarity=0.090 Sum_probs=102.5
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccE--EEEEEccCCCeEEEecCCcEEEEEcCCCcC
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI--TGLAYSNTSELLISYNDELVYLFEKNMGLG 121 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~ 121 (312)
..++.++.++.+.-.|..+++.....+...... . ....+ ..++...++.+++...++.|+-+|..++
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~--------~-~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG-- 130 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPAD--------R-GCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETG-- 130 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCcc--------c-cccccccCCcEEccCCeEEEecCCCeEEEEECCCC--
Confidence 356677788999999999988654432221100 0 00000 0111211245555567999999999888
Q ss_pred CCCCcCCcccccCCCCCceEecccC--Cc--eeeEEEEecCCCCEEEEec---------cCceEEEEeccCCeeEEEeec
Q 021484 122 PSPLSLSPEDLQKREEPQVYSGHRN--SQ--TVKGVNFFGPNDEYVMSGS---------DCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~v~~v~~~s~~~~~l~~~~---------~dg~v~iwd~~~~~~~~~~~~ 188 (312)
+.+..+..... .. ......+ . +..++.++ .+|.|..+|..+|+.+-.+..
T Consensus 131 --------------~~~W~~~~~~~~~~~~~i~ssP~v-~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 131 --------------KQVWKFGNNDQVPPGYTMTGAPTI-V--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred --------------CEeeeecCCCCcCcceEecCCCEE-E--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 45544432221 00 0111122 1 23444443 468899999999988766543
Q ss_pred Ccc--------------------ce-EEEEEcCCCCeEEEEeCCC------------------cEEEccCCCCCC---CC
Q 021484 189 DRH--------------------VV-NQLEPHPHIPMFATCGIEK------------------TVKLWAPMPTDF---PP 226 (312)
Q Consensus 189 ~~~--------------------~v-~~~~~~p~~~~l~t~~~d~------------------~i~iwd~~~~~~---~~ 226 (312)
... .+ ...++.+.+..++.++.++ .|.-.|+.+++. ..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 194 TEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred cCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 211 01 1234445566666666554 688888887763 11
Q ss_pred CCCCh--------hhhhhhhccCCCC---ceeEEecCCceEEEEEecccC
Q 021484 227 LPDNA--------EKIMKANKQGRED---HSRITLTPDVIMHVLRLQRRQ 265 (312)
Q Consensus 227 ~~~~~--------~~~~~~~~~~~~~---~~l~s~~~d~~i~i~~~~~~~ 265 (312)
...+. ..++... ...++ ..++.++.++.+..+|..+++
T Consensus 274 ~~~~~~~~~~~~s~p~~~~~-~~~~g~~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 274 TTPHDLWDYDGPNQPSLADI-KPKDGKPVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred CCCCCCcccccCCCCeEEec-cccCCCeeEEEEEECCCceEEEEECCCCc
Confidence 11111 1111100 00112 257778889999999887763
No 380
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.09 E-value=0.35 Score=41.33 Aligned_cols=157 Identities=15% Similarity=0.195 Sum_probs=78.3
Q ss_pred ceEEEEEcCCCCcEEEEEe-----------CCC-eEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccC
Q 021484 32 RLNAIVIDPRNPNYFAVGG-----------SDE-YARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNT 99 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 99 (312)
....|+|.++| +++++-. ..+ .|.+++-..+. ... .....+.........+++.++
T Consensus 15 ~P~~ia~d~~G-~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd--------G~~---d~~~vfa~~l~~p~Gi~~~~~ 82 (367)
T TIGR02604 15 NPIAVCFDERG-RLWVAEGITYSRPAGRQGPLGDRILILEDADGD--------GKY---DKSNVFAEELSMVTGLAVAVG 82 (367)
T ss_pred CCceeeECCCC-CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC--------CCc---ceeEEeecCCCCccceeEecC
Confidence 35689999998 6666642 223 67666543221 000 001111222334578899998
Q ss_pred CCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc--CCceeeEEEEecCCCCEEEEecc---------
Q 021484 100 SELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVMSGSD--------- 168 (312)
Q Consensus 100 ~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~s~~~~~l~~~~~--------- 168 (312)
| ++++......++.+....... +.. .. .....+.... .......++| .|+|.+.++-+.
T Consensus 83 G-lyV~~~~~i~~~~d~~gdg~a-d~~--~~-----~l~~~~~~~~~~~~~~~~~l~~-gpDG~LYv~~G~~~~~~~~~~ 152 (367)
T TIGR02604 83 G-VYVATPPDILFLRDKDGDDKA-DGE--RE-----VLLSGFGGQINNHHHSLNSLAW-GPDGWLYFNHGNTLASKVTRP 152 (367)
T ss_pred C-EEEeCCCeEEEEeCCCCCCCC-CCc--cE-----EEEEccCCCCCcccccccCceE-CCCCCEEEecccCCCceeccC
Confidence 8 666544433334354322100 000 00 0111111110 0012678888 899887665442
Q ss_pred ----------CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCC
Q 021484 169 ----------CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIE 211 (312)
Q Consensus 169 ----------dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d 211 (312)
.|.|.-++..+++. ..+...-.....++|+|+|.++++-..+
T Consensus 153 ~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 153 GTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 14566666665543 2332222345689999999987765533
No 381
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.03 E-value=0.88 Score=39.32 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=92.1
Q ss_pred cCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc-----CCCeEEEecCCcEEE
Q 021484 39 DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN-----TSELLISYNDELVYL 113 (312)
Q Consensus 39 ~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~s~~d~~i~i 113 (312)
++++...+++|+..|.++||+....... +-..+.. ..-..+|..++.-+ +...||.-.-..+.+
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~-------~~~lllE----~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~v 101 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQ-------PEDLLLE----TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSV 101 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCC-------CccEEEE----EecCCcEEEEEeccccCCCCcceEEEecCCEEEE
Confidence 3455579999999999999999544310 0001111 12246777776543 223666667888999
Q ss_pred EEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE---ecCC-CCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021484 114 FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF---FGPN-DEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 189 (312)
Q Consensus 114 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~---~s~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 189 (312)
|.+....+..... .. -.+.....|.-......+++ -... ..++.+=+.||.+.+|+-+.-.....+..
T Consensus 102 Y~v~~~~g~~~~g------~~-~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 102 YSVSLVDGTVEHG------NQ-YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred EEEEecCCCcccC------cE-EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 9884331110000 00 01122222322222233332 1122 46788889999999999775443344433
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484 190 RHVVNQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 190 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
.--.--+.|.|.-..|++++.+..|.-|..
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 112234778888889999998888888874
No 382
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.00 E-value=0.84 Score=39.63 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=27.2
Q ss_pred ccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021484 89 IHITGLAYSNTSELLISYNDELVYLFEKNMG 119 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~ 119 (312)
+.+..+.|+.+.++++...||.+++||+...
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCc
Confidence 7899999999878888889999999998754
No 383
>PHA02713 hypothetical protein; Provisional
Probab=95.95 E-value=0.57 Score=42.49 Aligned_cols=137 Identities=9% Similarity=0.032 Sum_probs=65.6
Q ss_pred CCCCEEEEeccCc-----eEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCC-------------------
Q 021484 158 PNDEYVMSGSDCG-----HLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE------------------- 211 (312)
Q Consensus 158 ~~~~~l~~~~~dg-----~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~t~~~d------------------- 211 (312)
.+++..+.|+.++ .+..||..+.+... .+.........+.. ++.+.+.||.+
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccc
Confidence 3677777887654 47889987764432 22111111112222 67777777754
Q ss_pred ----CcEEEccCCCCCCCCCCCChhhhhhhhccCCCCceeEEecCC------ceEEEEEecccCccceeEeecCC-CccC
Q 021484 212 ----KTVKLWAPMPTDFPPLPDNAEKIMKANKQGREDHSRITLTPD------VIMHVLRLQRRQTLAYRERRYNA-ADFE 280 (312)
Q Consensus 212 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d------~~i~i~~~~~~~~~~~~~~~~~~-~~~~ 280 (312)
..+..||+.+.....+...............++.+.+.|+.+ ..+..+|..+.+.......-+.. ....
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 247789988876543332111111111122345566666543 23455664431122222111111 1111
Q ss_pred CCCCCCeEEEeecCCC
Q 021484 281 SDEEEGETYLLGFSDS 296 (312)
Q Consensus 281 ~~~~~~~v~~~~~~~~ 296 (312)
...-++.+|+++--++
T Consensus 508 ~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 508 TILHDNTIMMLHCYES 523 (557)
T ss_pred eEEECCEEEEEeeecc
Confidence 1223556999986555
No 384
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.93 E-value=0.49 Score=41.87 Aligned_cols=155 Identities=7% Similarity=0.035 Sum_probs=90.4
Q ss_pred cceEEEEEcCCCCcEEEEEe--CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC-----CeE
Q 021484 31 IRLNAIVIDPRNPNYFAVGG--SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS-----ELL 103 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l 103 (312)
.++..++|.- |.+.++|.- .+|.+++=|-.. .+.-+.|..+.|.|-+ .+|
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGds~v----------------------iGqFEhV~GlsW~P~~~~~~paLL 76 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGDSKV----------------------IGQFEHVHGLSWAPPCTADTPALL 76 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCCccE----------------------eeccceeeeeeecCcccCCCCceE
Confidence 3688899975 536666653 344444333221 2334678999999964 266
Q ss_pred EEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccC-Cce--eeEEEEecCCCCEEEEeccCceEEEEecc--
Q 021484 104 ISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQT--VKGVNFFGPNDEYVMSGSDCGHLFIWKKK-- 178 (312)
Q Consensus 104 ~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--v~~v~~~s~~~~~l~~~~~dg~v~iwd~~-- 178 (312)
|.-....|.+|.+.... ..+.+.+.....+.. +-+ -..+.| +|....|++-+....=.+++..
T Consensus 77 AVQHkkhVtVWqL~~s~-----------~e~~K~l~sQtcEi~e~~pvLpQGCVW-HPk~~iL~VLT~~dvSV~~sV~~d 144 (671)
T PF15390_consen 77 AVQHKKHVTVWQLCPST-----------TERNKLLMSQTCEIREPFPVLPQGCVW-HPKKAILTVLTARDVSVLPSVHCD 144 (671)
T ss_pred EEeccceEEEEEeccCc-----------cccccceeeeeeeccCCcccCCCcccc-cCCCceEEEEecCceeEeeeeeeC
Confidence 76779999999986321 001122222221111 011 234567 8988888766654444455544
Q ss_pred CCeeEEEeecCccceEEEEEcCCCCeEEEE-eCCCcEEEccCCC
Q 021484 179 GGKLVRLMVGDRHVVNQLEPHPHIPMFATC-GIEKTVKLWAPMP 221 (312)
Q Consensus 179 ~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~-~~d~~i~iwd~~~ 221 (312)
+.+....++ ..+.|.|.+|.+||+.|+.+ +..=.-++||-..
T Consensus 145 ~srVkaDi~-~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 145 SSRVKADIK-TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CceEEEecc-CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 333334444 45789999999999875444 4445678898543
No 385
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.75 Score=37.13 Aligned_cols=170 Identities=12% Similarity=0.083 Sum_probs=98.5
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
...|.++.|+|+. +.|.+......-.++=...|+++..+.. . + -...-.|++..+|++.++- .+
T Consensus 85 ~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL---------~----g-~~DpE~Ieyig~n~fvi~dER~ 149 (316)
T COG3204 85 TANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPL---------T----G-FSDPETIEYIGGNQFVIVDERD 149 (316)
T ss_pred cccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEecc---------c----c-cCChhHeEEecCCEEEEEehhc
Confidence 4459999999998 5555555556665666566775543321 1 1 1223467777788888886 49
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe-e--EEE
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK-L--VRL 185 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~-~--~~~ 185 (312)
..++++.+....... ..... + -.+....... .-...++| ++..+.|+.+-+-.-+.||.+..+. . +..
T Consensus 150 ~~l~~~~vd~~t~~~----~~~~~-~-i~L~~~~k~N--~GfEGlA~-d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~ 220 (316)
T COG3204 150 RALYLFTVDADTTVI----SAKVQ-K-IPLGTTNKKN--KGFEGLAW-DPVDHRLFVAKERNPIGIFEVTQSPSSLSVHA 220 (316)
T ss_pred ceEEEEEEcCCccEE----eccce-E-EeccccCCCC--cCceeeec-CCCCceEEEEEccCCcEEEEEecCCccccccc
Confidence 999998876541000 00000 0 0011111112 22789999 8999999988888878887765332 1 111
Q ss_pred eecCc-------cceEEEEEcCCCCe-EEEEeCCCcEEEccCCCCC
Q 021484 186 MVGDR-------HVVNQLEPHPHIPM-FATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 186 ~~~~~-------~~v~~~~~~p~~~~-l~t~~~d~~i~iwd~~~~~ 223 (312)
...+. ..|.++.|++.... ++-+.+++.+.-.|.....
T Consensus 221 ~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~ 266 (316)
T COG3204 221 SLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEV 266 (316)
T ss_pred ccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCe
Confidence 11111 24677888875544 5566677777777766553
No 386
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.84 E-value=0.18 Score=39.07 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=66.4
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEE--ccCCeecCCCCCCCCcccccccccc-cCCCccEEEEEEccCCCeEEEe-cCC
Q 021484 34 NAIVIDPRNPNYFAVGGSDEYARVYD--IRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISY-NDE 109 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~-~d~ 109 (312)
+.++|+.+...+.++-+.+-+|.-|| ..++.+.+.- .+ +..+... ..+ ...-.++...+|.+.++. +.+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~----~i--~dlrk~~~~e~-~~PDGm~ID~eG~L~Va~~ng~ 233 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRK----VI--FDLRKSQPFES-LEPDGMTIDTEGNLYVATFNGG 233 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcc----ee--EEeccCCCcCC-CCCCcceEccCCcEEEEEecCc
Confidence 46888887756667778889997787 6677643211 00 0011000 011 111234446677766664 799
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 165 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~ 165 (312)
+|..+|..++ +.+..+.-.... +++++|--++-..|++
T Consensus 234 ~V~~~dp~tG----------------K~L~eiklPt~q--itsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 234 TVQKVDPTTG----------------KILLEIKLPTPQ--ITSCCFGGKNLDILYV 271 (310)
T ss_pred EEEEECCCCC----------------cEEEEEEcCCCc--eEEEEecCCCccEEEE
Confidence 9999999998 788888877755 9999994444344443
No 387
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.84 E-value=0.045 Score=29.97 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCC--cEEEEEeCCCeEEEEEccC
Q 021484 32 RLNAIVIDPRNP--NYFAVGGSDEYARVYDIRK 62 (312)
Q Consensus 32 ~v~~~~~~p~~~--~~l~~~~~dg~i~iwd~~~ 62 (312)
.|.+++|+|... .+|+.+-.-|.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 588999998664 6888888889999999995
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=0.76 Score=36.93 Aligned_cols=102 Identities=11% Similarity=0.150 Sum_probs=67.8
Q ss_pred EEEEEEccCCC-eEEEe-cCC-cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec
Q 021484 91 ITGLAYSNTSE-LLISY-NDE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 167 (312)
Q Consensus 91 i~~~~~~~~~~-~l~s~-~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~ 167 (312)
...++++|... -++.+ .-| ...++|..+. +...++....+.-.--.=.| +++|.+|++.-
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~----------------~~pv~~~s~~~RHfyGHGvf-s~dG~~LYATE 132 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGA----------------QEPVTLVSQEGRHFYGHGVF-SPDGRLLYATE 132 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCC----------------cCcEEEecccCceeeccccc-CCCCcEEEeec
Confidence 34678888765 33334 444 4678888776 44444443332211223346 99999998764
Q ss_pred c-----CceEEEEeccCC-eeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021484 168 D-----CGHLFIWKKKGG-KLVRLMVGDRHVVNQLEPHPHIPMFATCG 209 (312)
Q Consensus 168 ~-----dg~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~l~t~~ 209 (312)
. -|.|-|||.+.+ +.+.++..|.-....+.|.+||+.++.+.
T Consensus 133 ndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 133 NDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 3 467999998743 45677778877778899999999987764
No 389
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.81 E-value=1 Score=38.63 Aligned_cols=156 Identities=10% Similarity=0.068 Sum_probs=72.1
Q ss_pred EcCCCCcEEEEE--eC----CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec----
Q 021484 38 IDPRNPNYFAVG--GS----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---- 107 (312)
Q Consensus 38 ~~p~~~~~l~~~--~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---- 107 (312)
--|+| ++++++ .. -|-+.++|-++.++....+.+.. ...--..+-|.|..+.++|++
T Consensus 137 clp~G-~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~------------~~~~gYDfw~qpr~nvMiSSeWg~P 203 (461)
T PF05694_consen 137 CLPDG-RIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRG------------PQPFGYDFWYQPRHNVMISSEWGAP 203 (461)
T ss_dssp E-SS---EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-T------------T------EEEETTTTEEEE-B---H
T ss_pred ecCCc-cEEEEeccCCCCCCCCcEEEEcCccccccceeccCCC------------CCCCCCCeEEcCCCCEEEEeccCCh
Confidence 34667 677664 22 25577778776664433222111 122234555666555555543
Q ss_pred -----------------CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE-ecCCCCEEEE-ecc
Q 021484 108 -----------------DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF-FGPNDEYVMS-GSD 168 (312)
Q Consensus 108 -----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~-~s~~~~~l~~-~~~ 168 (312)
...+.+||+.+. +.++++.--........+.| +.|+..+=++ +..
T Consensus 204 ~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r----------------~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aL 267 (461)
T PF05694_consen 204 SMFEKGFNPEDLEAGKYGHSLHVWDWSTR----------------KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCAL 267 (461)
T ss_dssp HHHTT---TTTHHHH-S--EEEEEETTTT----------------EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE-
T ss_pred hhcccCCChhHhhcccccCeEEEEECCCC----------------cEeeEEecCCCCCceEEEEecCCCCccceEEEEec
Confidence 234889998876 77777764433233556666 3555555333 334
Q ss_pred CceEEEEec-cCCe----eEEEeecC-----------------ccceEEEEEcCCCCeEEEEe-CCCcEEEccCCCC
Q 021484 169 CGHLFIWKK-KGGK----LVRLMVGD-----------------RHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMPT 222 (312)
Q Consensus 169 dg~v~iwd~-~~~~----~~~~~~~~-----------------~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~~ 222 (312)
..+|..|-- ..++ .+..+... ..-|+++..|.+.++|..++ .+|.||.||+...
T Consensus 268 ss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 268 SSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 556665543 3332 22222110 23578999999999976666 8999999998764
No 390
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.81 E-value=0.1 Score=40.84 Aligned_cols=72 Identities=13% Similarity=0.230 Sum_probs=51.9
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccccc-------CCCccEEEEEEccCCCeEEEecCCc
Q 021484 38 IDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-------KNNIHITGLAYSNTSELLISYNDEL 110 (312)
Q Consensus 38 ~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~l~s~~d~~ 110 (312)
+...+ .++++-+.+|.+++||+.+++...... ....++. .....|..+.++.+|.-+++-++|.
T Consensus 18 l~~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~--------Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~ 88 (219)
T PF07569_consen 18 LECNG-SYLLAITSSGLLYVWNLKKGKAVLPPV--------SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGD 88 (219)
T ss_pred EEeCC-CEEEEEeCCCeEEEEECCCCeeccCCc--------cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCC
Confidence 34455 678888999999999999988643321 1111111 3567889999999998888877888
Q ss_pred EEEEEcCC
Q 021484 111 VYLFEKNM 118 (312)
Q Consensus 111 i~iwd~~~ 118 (312)
.+.|+..-
T Consensus 89 ~y~y~~~L 96 (219)
T PF07569_consen 89 SYSYSPDL 96 (219)
T ss_pred EEEecccc
Confidence 99998754
No 391
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.61 Score=40.68 Aligned_cols=70 Identities=11% Similarity=0.193 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcE
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELV 111 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i 111 (312)
.-.|++-..+| .+++|+.+|.||+||- .+. ..+..+.+-..+|..+..+.+|+.|++..+..+
T Consensus 432 nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~--------------~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyL 494 (644)
T KOG2395|consen 432 NFSCFATTESG--YIVVGSLKGDIRLYDR-IGR--------------RAKTALPGLGDAIKHVDVTADGKWILATCKTYL 494 (644)
T ss_pred ccceeeecCCc--eEEEeecCCcEEeehh-hhh--------------hhhhcccccCCceeeEEeeccCcEEEEecccEE
Confidence 34566666665 8999999999999997 444 334444677889999999999998888878888
Q ss_pred EEEEcCC
Q 021484 112 YLFEKNM 118 (312)
Q Consensus 112 ~iwd~~~ 118 (312)
.+-++.-
T Consensus 495 lLi~t~~ 501 (644)
T KOG2395|consen 495 LLIDTLI 501 (644)
T ss_pred EEEEEec
Confidence 8877643
No 392
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.61 E-value=1.1 Score=37.26 Aligned_cols=165 Identities=10% Similarity=0.069 Sum_probs=87.6
Q ss_pred CCCCcEEEEEeCCCeEEEEEcc-CCeecCCCCCCCCcccccccccccCCCccEE-EEEEccCC-CeEEEecCCcEEEEEc
Q 021484 40 PRNPNYFAVGGSDEYARVYDIR-KCHWYSPISSDTPVDTFCPRHLIGKNNIHIT-GLAYSNTS-ELLISYNDELVYLFEK 116 (312)
Q Consensus 40 p~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~-~~l~s~~d~~i~iwd~ 116 (312)
|.+++-|.+-+.||++.-..+. .++.. + ....++....+++. .-++...+ .++..+-+|.|+-.|+
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~---------~--~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dl 212 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEA---------Q--KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADL 212 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEE---------E--EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEe---------E--eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEec
Confidence 4444668888999999999987 44421 0 01111122222222 22344433 4666667888888888
Q ss_pred CCCcCCCCCcCCcccccCCC-CCceEecccCCceeeEEEEecCCCCEEEEecc----------CceEEEEeccCCeeEEE
Q 021484 117 NMGLGPSPLSLSPEDLQKRE-EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD----------CGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~ 185 (312)
...... ....|.+.+-. ...... .+. -.-+++ ++..+.|++.-. ...|.++|+.+++.+..
T Consensus 213 sg~~~~---~~~~~~~~t~~e~~~~Wr--PGG--~Q~~A~-~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~R 284 (342)
T PF06433_consen 213 SGDSAK---FGKPWSLLTDAEKADGWR--PGG--WQLIAY-HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVAR 284 (342)
T ss_dssp TTSSEE---EEEEEESS-HHHHHTTEE--E-S--SS-EEE-ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEE
T ss_pred cCCccc---ccCcccccCccccccCcC--Ccc--eeeeee-ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEE
Confidence 664100 00011100000 000000 011 233566 444444443222 12488899999999998
Q ss_pred eecCccceEEEEEcCCCC-eEEEEe-CCCcEEEccCCCCCC
Q 021484 186 MVGDRHVVNQLEPHPHIP-MFATCG-IEKTVKLWAPMPTDF 224 (312)
Q Consensus 186 ~~~~~~~v~~~~~~p~~~-~l~t~~-~d~~i~iwd~~~~~~ 224 (312)
+.. ..++.++..+.+.+ .|++.+ .++.|.+||..+++.
T Consensus 285 i~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 285 IPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 874 24677899988765 565544 689999999999864
No 393
>PHA03098 kelch-like protein; Provisional
Probab=95.58 E-value=0.88 Score=41.13 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=36.3
Q ss_pred CCCEEEEeccC------ceEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC--------CcEEEccCCCC
Q 021484 159 NDEYVMSGSDC------GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE--------KTVKLWAPMPT 222 (312)
Q Consensus 159 ~~~~l~~~~~d------g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~t~~~d--------~~i~iwd~~~~ 222 (312)
+++..+.|+.+ ..+..||..+.+.... +....... ++ ..-++..++.|+.+ ..+.+||+.+.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 56666777632 4588899877654321 11111111 12 22255666666642 23888999887
Q ss_pred CCCCC
Q 021484 223 DFPPL 227 (312)
Q Consensus 223 ~~~~~ 227 (312)
+...+
T Consensus 467 ~W~~~ 471 (534)
T PHA03098 467 KWTEL 471 (534)
T ss_pred ceeeC
Confidence 75444
No 394
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.50 E-value=1.2 Score=36.90 Aligned_cols=150 Identities=16% Similarity=0.123 Sum_probs=84.6
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEE
Q 021484 35 AIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLF 114 (312)
Q Consensus 35 ~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iw 114 (312)
+-.|.++...++.+--..+.|.-|+..+++.. . ..+...+.++..-..+..|+++.. -++++
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~----------~-------~~~p~~~~~~~~~d~~g~Lv~~~~-g~~~~ 90 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR----------V-------FPSPGGFSSGALIDAGGRLIACEH-GVRLL 90 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE----------E-------EECCCCcccceeecCCCeEEEEcc-ccEEE
Confidence 34577777557777778888999998866411 1 111223344444334445555433 23444
Q ss_pred EcCCCcCCCCCcCCcccccCCCCCceE----ecccCCceeeEEEEecCCCCEEEEecc-----------CceEEEEeccC
Q 021484 115 EKNMGLGPSPLSLSPEDLQKREEPQVY----SGHRNSQTVKGVNFFGPNDEYVMSGSD-----------CGHLFIWKKKG 179 (312)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~v~~~s~~~~~l~~~~~-----------dg~v~iwd~~~ 179 (312)
+..++ .....+ .+... ...+.+.. .|+|.+.++... -|.|+-+|. .
T Consensus 91 ~~~~~----------------~~~t~~~~~~~~~~~-~r~ND~~v-~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~ 151 (307)
T COG3386 91 DPDTG----------------GKITLLAEPEDGLPL-NRPNDGVV-DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D 151 (307)
T ss_pred eccCC----------------ceeEEeccccCCCCc-CCCCceeE-cCCCCEEEeCCCccccCccccCCcceEEEEcC-C
Confidence 54433 111111 11111 12456666 788887665443 233555554 4
Q ss_pred CeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCC
Q 021484 180 GKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMP 221 (312)
Q Consensus 180 ~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~ 221 (312)
+..++.+..+-..-+.++|||+++.|..+. ..+.|.-|++..
T Consensus 152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 666666665555668899999998876665 457888887653
No 395
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.19 E-value=0.86 Score=42.41 Aligned_cols=72 Identities=15% Similarity=0.229 Sum_probs=50.3
Q ss_pred eeeEEEEecCCCCEEEEeccCceEEEEecc---------CCee---EEEee--------cCccceEEEEEcCCC---CeE
Q 021484 149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKK---------GGKL---VRLMV--------GDRHVVNQLEPHPHI---PMF 205 (312)
Q Consensus 149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~---------~~~~---~~~~~--------~~~~~v~~~~~~p~~---~~l 205 (312)
.|..+.. +++|.+|+..+..|.+.+.=.+ .|+. .+.+. .+...|..+.|||.+ .+|
T Consensus 86 ~v~~i~~-n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISL-NPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEE-CCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 3888988 9999999988886655443222 1111 12221 233578899999974 678
Q ss_pred EEEeCCCcEEEccCCC
Q 021484 206 ATCGIEKTVKLWAPMP 221 (312)
Q Consensus 206 ~t~~~d~~i~iwd~~~ 221 (312)
+.-..|+++|+||+..
T Consensus 165 ~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISD 180 (717)
T ss_pred EEEecCCEEEEEecCC
Confidence 8888999999999864
No 396
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.18 E-value=0.6 Score=40.22 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=58.9
Q ss_pred cCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC---
Q 021484 85 GKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND--- 160 (312)
Q Consensus 85 ~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~--- 160 (312)
......+.+|+.+|.+++.|.+ +-|.|.++|+.++ ..++.++|.++.. +.-+.......
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~----------------~vvrmWKGYRdAq-c~wi~~~~~~~~~~ 366 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG----------------IVVRMWKGYRDAQ-CGWIEVPEEGDRDR 366 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC----------------hhhhhhccCccce-EEEEEeeccccccc
Confidence 4455678899999999888887 4899999999987 6777777776531 11111101111
Q ss_pred -------------C-EEEEeccCceEEEEeccCCeeEEEeec
Q 021484 161 -------------E-YVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 161 -------------~-~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
. +++-+-.-|.|-||.+++|..+..+..
T Consensus 367 ~~~~~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 367 SNSNSPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccccccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 1 233456688899999998888776653
No 397
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=1.8 Score=37.34 Aligned_cols=121 Identities=11% Similarity=0.088 Sum_probs=71.6
Q ss_pred cCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEE
Q 021484 85 GKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYV 163 (312)
Q Consensus 85 ~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l 163 (312)
....++|.++.|++|.+.||.- .+..|.+++..... . +.....+.......|....| +.+ .-+
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~------------~--~l~~~~~ck~k~~~IlGF~W-~~s-~e~ 126 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN------------S--QLEYTQECKTKNANILGFCW-TSS-TEI 126 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCc------------h--hhHHHHHhccCcceeEEEEE-ecC-eeE
Confidence 3446799999999999999985 69999999984430 0 11111111112123888888 444 444
Q ss_pred EEeccCceEEEEeccC-CeeEEEeecCccceEEEEEcCCCCeEE-EEe-CCCcEEEccCCCC
Q 021484 164 MSGSDCGHLFIWKKKG-GKLVRLMVGDRHVVNQLEPHPHIPMFA-TCG-IEKTVKLWAPMPT 222 (312)
Q Consensus 164 ~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~p~~~~l~-t~~-~d~~i~iwd~~~~ 222 (312)
|..+..| +-+|-... ...++..+.|...|.-..|.|+.+.++ +.+ ..+++.=+-++.+
T Consensus 127 A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 127 AFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 4444333 44454332 334555667888888889999988733 333 3444444444443
No 398
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.87 E-value=0.03 Score=51.43 Aligned_cols=158 Identities=12% Similarity=0.097 Sum_probs=83.7
Q ss_pred ceEEEEEcC---CCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEE-----------Ec
Q 021484 32 RLNAIVIDP---RNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA-----------YS 97 (312)
Q Consensus 32 ~v~~~~~~p---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----------~~ 97 (312)
.+.-+.|.| +. .++..+-.++.+++.++.... ..++.+|...++.++ .+
T Consensus 182 ~~~~V~wcp~~~~~-~~ic~~~~~~~i~lL~~~ra~----------------~~l~rsHs~~~~d~a~~~~g~~~l~~lS 244 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNK-VYICYGLKGGEIRLLNINRAL----------------RSLFRSHSQRVTDMAFFAEGVLKLASLS 244 (1283)
T ss_pred Ccceeeeccccccc-ceeeeccCCCceeEeeechHH----------------HHHHHhcCCCcccHHHHhhchhhheeeC
Confidence 345566665 44 577778888999988776432 112233544444332 68
Q ss_pred cCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecC--------CCCEEEEec-
Q 021484 98 NTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGP--------NDEYVMSGS- 167 (312)
Q Consensus 98 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~--------~~~~l~~~~- 167 (312)
|||+.++.. .||.++.|.+.-....+. .++...+.|.....|+.+ |+.. .-.++++++
T Consensus 245 pDGtv~a~a~~dG~v~f~Qiyi~g~~~~-----------rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd 312 (1283)
T KOG1916|consen 245 PDGTVFAWAISDGSVGFYQIYITGKIVH-----------RCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTD 312 (1283)
T ss_pred CCCcEEEEeecCCccceeeeeeeccccH-----------hhhhccCCCCCCCceeee-eccccccCCccceeEEEEeccc
Confidence 888888875 688888777632211111 333444444422223333 2111 112344444
Q ss_pred cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCe------------EEEEeCCCcEEEccCCC
Q 021484 168 DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPM------------FATCGIEKTVKLWAPMP 221 (312)
Q Consensus 168 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~------------l~t~~~d~~i~iwd~~~ 221 (312)
....+++|.....+|+..+ ....|..|. -+++.. +++-+.+++|++|.-+.
T Consensus 313 ~nre~k~w~~a~w~Cll~~--~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 313 VNREEKFWAEAPWQCLLDK--LIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred CCcceeEeeccchhhhhhh--cccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 4567899987777765211 122333343 222221 33456788999997443
No 399
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.86 E-value=0.024 Score=52.01 Aligned_cols=163 Identities=10% Similarity=0.025 Sum_probs=90.1
Q ss_pred CCccceEEEEEcCCCCcEEEEEeCCCeEEEEEccC--CeecCCCCCCCCcccccccccccCCCccEEEEEEcc---CCCe
Q 021484 28 MNSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRK--CHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN---TSEL 102 (312)
Q Consensus 28 ~h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~ 102 (312)
|.++.|-.+.|-......++ -.-|.+.+|++.- |++.. -...+........+.-+.|.| +.-+
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~----------~l~v~~~~p~gs~~~~V~wcp~~~~~~~ 197 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQP----------QLEVTPITPYGSDPQLVSWCPIAVNKVY 197 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhcccccc----------ceEEeecCcCCCCcceeeecccccccce
Confidence 44667777777432212222 3447788999863 32111 011111122233445566665 3335
Q ss_pred EEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE----------ecCCCCEEEEeccCce
Q 021484 103 LISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF----------FGPNDEYVMSGSDCGH 171 (312)
Q Consensus 103 l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~----------~s~~~~~l~~~~~dg~ 171 (312)
+..+ .++.+++.+.... ....+.+|... +..++| .+|||..++.++.||.
T Consensus 198 ic~~~~~~~i~lL~~~ra-----------------~~~l~rsHs~~--~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~ 258 (1283)
T KOG1916|consen 198 ICYGLKGGEIRLLNINRA-----------------LRSLFRSHSQR--VTDMAFFAEGVLKLASLSPDGTVFAWAISDGS 258 (1283)
T ss_pred eeeccCCCceeEeeechH-----------------HHHHHHhcCCC--cccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence 5555 4888888776553 33445555533 333332 2899999999999999
Q ss_pred EEEEecc-----CCeeEEEeecCcc-ceEEEEEcCCC---------CeEEEEe-CCCcEEEccCCC
Q 021484 172 LFIWKKK-----GGKLVRLMVGDRH-VVNQLEPHPHI---------PMFATCG-IEKTVKLWAPMP 221 (312)
Q Consensus 172 v~iwd~~-----~~~~~~~~~~~~~-~v~~~~~~p~~---------~~l~t~~-~d~~i~iwd~~~ 221 (312)
+++|.+. .-.++..++.|.+ +-.|.-++.+. .++++++ ....+++|....
T Consensus 259 v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 259 VGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred cceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 8888753 2345667777773 33333333322 1344444 556799998553
No 400
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.84 E-value=1.1 Score=38.89 Aligned_cols=112 Identities=8% Similarity=0.000 Sum_probs=66.7
Q ss_pred cEEEEEEccCCCeEEEe-c-CC----cEEEEEcCCCcCCCCCcCCcccccCCCCCc-eEecccCCceeeEEEEecCCCCE
Q 021484 90 HITGLAYSNTSELLISY-N-DE----LVYLFEKNMGLGPSPLSLSPEDLQKREEPQ-VYSGHRNSQTVKGVNFFGPNDEY 162 (312)
Q Consensus 90 ~i~~~~~~~~~~~l~s~-~-d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v~~~s~~~~~ 162 (312)
.+....++|+|++++.+ + .| .++++|+.++ +.+. .+.... ...+.| .++++.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg----------------~~l~d~i~~~~----~~~~~W-~~d~~~ 183 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG----------------KFLPDGIENPK----FSSVSW-SDDGKG 183 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT----------------EEEEEEEEEEE----SEEEEE-CTTSSE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC----------------cCcCCcccccc----cceEEE-eCCCCE
Confidence 34467899999977764 3 44 4999999887 3332 222111 233889 888777
Q ss_pred EEEecc-----------CceEEEEeccCCee--EEEeecCccc--eEEEEEcCCCCeEEEE-eCC---CcEEEccCCCC
Q 021484 163 VMSGSD-----------CGHLFIWKKKGGKL--VRLMVGDRHV--VNQLEPHPHIPMFATC-GIE---KTVKLWAPMPT 222 (312)
Q Consensus 163 l~~~~~-----------dg~v~iwd~~~~~~--~~~~~~~~~~--v~~~~~~p~~~~l~t~-~~d---~~i~iwd~~~~ 222 (312)
|+.... ...|+.|.+.+... ...+...... ...+..++++++++.. ... ..+.+.++...
T Consensus 184 ~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 184 FFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 654432 23477888776543 2344433332 5678899999995543 322 34777777764
No 401
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.82 E-value=2.3 Score=36.59 Aligned_cols=205 Identities=11% Similarity=0.104 Sum_probs=88.0
Q ss_pred cEEEE-EeCCCeEEEEEccCCeecCCCCCCCCccccccccccc-CCCccEEEEEEccCCCeEEEe-c--C----CcEEEE
Q 021484 44 NYFAV-GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIG-KNNIHITGLAYSNTSELLISY-N--D----ELVYLF 114 (312)
Q Consensus 44 ~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~s~-~--d----~~i~iw 114 (312)
++|+. |-..+.|+|.|+.+.-- .+.-.....+..+.. ..-.....+..-|+|.+++++ + + |-+.++
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr-----~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPR-----KPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TT-----S-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred CcEEeeeeccCcEEEEECCCCCC-----CCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence 44544 55789999999985420 000011111111111 111223334445788877774 2 3 237777
Q ss_pred EcCCCcCCCCCcCCcccccCCCCCceEecccC-CceeeEEEEecCCCCEEEEec--------------------cCceEE
Q 021484 115 EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRN-SQTVKGVNFFGPNDEYVMSGS--------------------DCGHLF 173 (312)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~~s~~~~~l~~~~--------------------~dg~v~ 173 (312)
|-++. +.......... ...-...-| .|..+.+++.. ...++.
T Consensus 163 D~~tf----------------~v~g~We~~~~~~~~gYDfw~-qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~ 225 (461)
T PF05694_consen 163 DGETF----------------EVKGRWEKDRGPQPFGYDFWY-QPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLH 225 (461)
T ss_dssp -TTT------------------EEEE--SB-TT------EEE-ETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEE
T ss_pred cCccc----------------cccceeccCCCCCCCCCCeEE-cCCCCEEEEeccCChhhcccCCChhHhhcccccCeEE
Confidence 76654 23333322211 112344544 67777776654 256899
Q ss_pred EEeccCCeeEEEeecCc--cceEEEEE--cCCCCe-EEEEeCCCcEEEccC-CCCC-----CCCCCCC------------
Q 021484 174 IWKKKGGKLVRLMVGDR--HVVNQLEP--HPHIPM-FATCGIEKTVKLWAP-MPTD-----FPPLPDN------------ 230 (312)
Q Consensus 174 iwd~~~~~~~~~~~~~~--~~v~~~~~--~p~~~~-l~t~~~d~~i~iwd~-~~~~-----~~~~~~~------------ 230 (312)
+||+.+.+.++++.... ..+..+.| .|+..+ ++.+-...+|-.|-- ..++ +..++..
T Consensus 226 vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~ 305 (461)
T PF05694_consen 226 VWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLK 305 (461)
T ss_dssp EEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGG
T ss_pred EEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccc
Confidence 99999999999887443 23456666 466666 555545555555432 3322 1111110
Q ss_pred ----hhhhhhhhccCCCCcee-EEecCCceEEEEEecccCcccee
Q 021484 231 ----AEKIMKANKQGREDHSR-ITLTPDVIMHVLRLQRRQTLAYR 270 (312)
Q Consensus 231 ----~~~~~~~~~~~~~~~~l-~s~~~d~~i~i~~~~~~~~~~~~ 270 (312)
..++++....+.+.++| ++.=-.|.++.+|+.....+...
T Consensus 306 ~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 306 PFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp GG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred ccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 12344555566666665 45667899999999876554443
No 402
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.81 E-value=1.7 Score=34.80 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=80.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCc
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL 110 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~ 110 (312)
-.-.+++..++ .++++.-.++.+.++++........ ...+..+.. .+...++..+-.++|.|.++.|... ...-
T Consensus 66 D~EgI~y~g~~-~~vl~~Er~~~L~~~~~~~~~~~~~---~~~~~~~~l-~~~~~~N~G~EGla~D~~~~~L~v~kE~~P 140 (248)
T PF06977_consen 66 DYEGITYLGNG-RYVLSEERDQRLYIFTIDDDTTSLD---RADVQKISL-GFPNKGNKGFEGLAYDPKTNRLFVAKERKP 140 (248)
T ss_dssp SEEEEEE-STT-EEEEEETTTTEEEEEEE----TT-----EEEEEEEE----S---SS--EEEEEETTTTEEEEEEESSS
T ss_pred CceeEEEECCC-EEEEEEcCCCcEEEEEEeccccccc---hhhceEEec-ccccCCCcceEEEEEcCCCCEEEEEeCCCC
Confidence 35567776655 5555555688999998854320000 000111111 1112355668999999987754444 4555
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCc
Q 021484 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR 190 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 190 (312)
..+|.+...... ..+...... ......... ..+.++++++..+++++.......|..+| .+|+++..+....
T Consensus 141 ~~l~~~~~~~~~--~~~~~~~~~---~~~~~~~~~--~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~ 212 (248)
T PF06977_consen 141 KRLYEVNGFPGG--FDLFVSDDQ---DLDDDKLFV--RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDR 212 (248)
T ss_dssp EEEEEEESTT-S--S--EEEE-H---HHH-HT--S--S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-ST
T ss_pred hhhEEEccccCc--cceeecccc---cccccccee--ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCC
Confidence 556665431000 000000000 000000111 22788998666788888889999999999 5688776664322
Q ss_pred ---------cceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484 191 ---------HVVNQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 191 ---------~~v~~~~~~p~~~~l~t~~~d~~i~i 216 (312)
...-.|+|.++|++.+++ +-+..++
T Consensus 213 g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 213 GFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR 246 (248)
T ss_dssp TGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred cccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence 256789999998776554 4444443
No 403
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.73 E-value=1.3 Score=37.54 Aligned_cols=154 Identities=12% Similarity=0.057 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCcEEEEEeCCCe--EEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCC
Q 021484 33 LNAIVIDPRNPNYFAVGGSDEY--ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDE 109 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~ 109 (312)
-+.=+|.++|.++|..+..||. +.+.|+.+++..+.. .+.........++|+.+.++.- ...
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLT---------------dg~g~~~~g~~~s~~~~~~~Yv~~~~ 102 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLT---------------DGPGDNTFGGFLSPDDRALYYVKNGR 102 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE------------------SS-B-TTT-EE-TTSSEEEEEETTT
T ss_pred ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECc---------------cCCCCCccceEEecCCCeEEEEECCC
Confidence 3445677888666666665654 666677777633211 1111112235567887766554 567
Q ss_pred cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe-cCCCCEEEEec---------------------
Q 021484 110 LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF-GPNDEYVMSGS--------------------- 167 (312)
Q Consensus 110 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~-s~~~~~l~~~~--------------------- 167 (312)
.|+-.|+.+. +....+...... +-...|. +.++..++-.-
T Consensus 103 ~l~~vdL~T~----------------e~~~vy~~p~~~--~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a 164 (386)
T PF14583_consen 103 SLRRVDLDTL----------------EERVVYEVPDDW--KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA 164 (386)
T ss_dssp EEEEEETTT------------------EEEEEE--TTE--EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred eEEEEECCcC----------------cEEEEEECCccc--ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence 8888899886 444445444432 3333442 34455443221
Q ss_pred -cCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCC-----cEEEccCC
Q 021484 168 -DCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEK-----TVKLWAPM 220 (312)
Q Consensus 168 -~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~-----~i~iwd~~ 220 (312)
-...|.-.|+.+|+....+. -...+..+.|+|....+++=+.+| .-|||-++
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~ 222 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN 222 (386)
T ss_dssp ---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred CCCceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence 13356667788887655554 345678899999888766554333 13667554
No 404
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.72 E-value=0.24 Score=38.83 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=53.3
Q ss_pred cCCCCEEEEeccCceEEEEeccCCeeEEEe-------e-------cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484 157 GPNDEYVMSGSDCGHLFIWKKKGGKLVRLM-------V-------GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 157 s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
...+++|++.+.+|.+++||+.+++.+..- . .....|..+..+.+|.-+++-+ +|....|+..-+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence 457889999999999999999988764321 1 2446788889998887777765 688999998877
Q ss_pred CCCCC
Q 021484 223 DFPPL 227 (312)
Q Consensus 223 ~~~~~ 227 (312)
....+
T Consensus 98 ~W~~v 102 (219)
T PF07569_consen 98 CWIRV 102 (219)
T ss_pred eeEEe
Confidence 65443
No 405
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.72 E-value=1.8 Score=34.81 Aligned_cols=160 Identities=11% Similarity=0.017 Sum_probs=87.4
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCc
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDEL 110 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~ 110 (312)
.+.+.++++++..+.+....++.-.+|-...+. ....... ...+....|++++.+.+.. .+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--------------~~~~~~~--g~~l~~PS~d~~g~~W~v~~~~~~ 88 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--------------PVRPVLT--GGSLTRPSWDPDGWVWTVDDGSGG 88 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--------------cceeecc--CCccccccccCCCCEEEEEcCCCc
Confidence 688999999994444444233334444433332 1111111 2367778999998866664 4555
Q ss_pred EEEEE-cCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec---cCceEEEEecc---CC---
Q 021484 111 VYLFE-KNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS---DCGHLFIWKKK---GG--- 180 (312)
Q Consensus 111 i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~---~dg~v~iwd~~---~~--- 180 (312)
.+++. ...+. ..............|..+.+ +|+|..++... .++.|.+--+. .+
T Consensus 89 ~~~~~~~~~g~---------------~~~~~v~~~~~~~~I~~l~v-SpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~ 152 (253)
T PF10647_consen 89 VRVVRDSASGT---------------GEPVEVDWPGLRGRITALRV-SPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPR 152 (253)
T ss_pred eEEEEecCCCc---------------ceeEEecccccCCceEEEEE-CCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcc
Confidence 56553 22220 11111111111014999999 99999887655 35777776532 23
Q ss_pred ---eeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEE-ccCCCCC
Q 021484 181 ---KLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKL-WAPMPTD 223 (312)
Q Consensus 181 ---~~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~i-wd~~~~~ 223 (312)
.+..........+.++.|.+++.+++.+. .++.+.. .......
T Consensus 153 ~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~ 200 (253)
T PF10647_consen 153 RLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGP 200 (253)
T ss_pred eeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCc
Confidence 11122222345789999999998866555 4443444 4444433
No 406
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=0.59 Score=44.60 Aligned_cols=122 Identities=11% Similarity=-0.098 Sum_probs=75.2
Q ss_pred ccEEEEEEccCCCeEEE--e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecc----cCCceeeEEEEecCCC-
Q 021484 89 IHITGLAYSNTSELLIS--Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGH----RNSQTVKGVNFFGPND- 160 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s--~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~~~s~~~- 160 (312)
-++..+...+|+...+. . .+-.|+.||++.-...... ..+.+..+ .......++.| +|.-
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~-----------~~~pl~~s~ts~ek~vf~~~~~w-nP~vp 168 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE-----------TTVPLKNSATSFEKPVFQLKNVW-NPLVP 168 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh-----------hccccccccchhccccccccccc-cCCcc
Confidence 45566667778764433 3 3557899999764211100 01111111 11122566777 5543
Q ss_pred CEEEEeccCceEEEEeccCCe-eEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 161 EYVMSGSDCGHLFIWKKKGGK-LVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 161 ~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
-..+.+..|+.|++..+.... .+..+. ....+++++|+|.|+.++.|-..|++.-|....+.
T Consensus 169 ~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei 231 (1405)
T KOG3630|consen 169 LNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI 231 (1405)
T ss_pred chhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccce
Confidence 335667788999888765332 233332 34577999999999999999999999999877664
No 407
>PHA02790 Kelch-like protein; Provisional
Probab=94.45 E-value=3.1 Score=37.12 Aligned_cols=64 Identities=6% Similarity=-0.058 Sum_probs=35.1
Q ss_pred CCCEEEEeccCc---eEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCC
Q 021484 159 NDEYVMSGSDCG---HLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPL 227 (312)
Q Consensus 159 ~~~~l~~~~~dg---~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~ 227 (312)
+++..+.|+.++ .+..||..+.+.... +.........+ .-++++.+.|+ .+.+||+.+.+...+
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~W~~~ 430 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSNTWTLI 430 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE--EECCEEEEECC---ceEEecCCCCcEeEc
Confidence 577777777543 467888876654321 11111111112 23566666663 577899988765443
No 408
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.37 E-value=1.2 Score=38.93 Aligned_cols=141 Identities=11% Similarity=0.136 Sum_probs=85.0
Q ss_pred EEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC--------CeEEEecCCcEEEEEc
Q 021484 45 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS--------ELLISYNDELVYLFEK 116 (312)
Q Consensus 45 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~s~~d~~i~iwd~ 116 (312)
++..|....+++-.|+..|+++.++ .-|.. + -+.|.|.. +-|+.-++..|.-.|.
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW---------------~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDP 544 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEW---------------DLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDP 544 (776)
T ss_pred EEecCCCcccceeeecccceeeeEe---------------ecCCc-c-eeecCCchhHHhcCccceEEeecccceEEecc
Confidence 4445666777888888888754332 22222 2 45666643 2455556777766666
Q ss_pred CCCcCCCCCcCCcccccCCCCCce--EecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceE
Q 021484 117 NMGLGPSPLSLSPEDLQKREEPQV--YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVN 194 (312)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~ 194 (312)
+-.. ..+.. ++.........+.. .....++++|+..|.|++||.-.......+++....|.
T Consensus 545 R~~g---------------NKi~v~esKdY~tKn~Fss~~--tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk 607 (776)
T COG5167 545 RARG---------------NKIKVVESKDYKTKNKFSSGM--TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIK 607 (776)
T ss_pred cccC---------------Cceeeeeehhccccccccccc--cccCceEEEecCCCceeeehhhcchhhhcCccccccee
Confidence 5421 11111 11111111123332 34567899999999999999664444556677778899
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484 195 QLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 195 ~~~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
.+..+.+|+++++.+ ..++.+-|+.
T Consensus 608 ~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 608 HIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred eeEeecCCcEEEEee-cceEEEEecc
Confidence 999999999966555 3566676654
No 409
>PHA03098 kelch-like protein; Provisional
Probab=94.17 E-value=2.2 Score=38.65 Aligned_cols=67 Identities=7% Similarity=0.073 Sum_probs=36.8
Q ss_pred CCCEEEEeccC--------ceEEEEeccCCeeEEE--eecCccceEEEEEcCCCCeEEEEeCC-----CcEEEccCCCCC
Q 021484 159 NDEYVMSGSDC--------GHLFIWKKKGGKLVRL--MVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTD 223 (312)
Q Consensus 159 ~~~~l~~~~~d--------g~v~iwd~~~~~~~~~--~~~~~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~ 223 (312)
++...+.|+.. ..+.+||..+.+.... +.........+.+ +++.++.|+.+ ..|.+||+.+..
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 46666666642 2388899887654322 1111111112222 66677777643 468888888776
Q ss_pred CCCC
Q 021484 224 FPPL 227 (312)
Q Consensus 224 ~~~~ 227 (312)
...+
T Consensus 515 W~~~ 518 (534)
T PHA03098 515 WTLF 518 (534)
T ss_pred EEec
Confidence 5443
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.01 E-value=4.3 Score=37.99 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=53.0
Q ss_pred ccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEe------cccCCceeeEEEEecCC---
Q 021484 89 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS------GHRNSQTVKGVNFFGPN--- 159 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~v~~~s~~--- 159 (312)
-.|..|..+|+|++++-.+...|.|..+....+.... + ++....-..+.+. .......|..+.| +|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~-~--~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~W-hP~s~~ 160 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGE-F--EDGKKEINCRTVPVDERFFTSNSSLEIKQVRW-HPWSES 160 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCcccc-c--cCCCcceeEEEEEechhhccCCCCceEEEEEE-cCCCCC
Confidence 4688999999999888877677777776543211100 0 0000000111111 1111234899999 665
Q ss_pred CCEEEEeccCceEEEEeccC
Q 021484 160 DEYVMSGSDCGHLFIWKKKG 179 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~ 179 (312)
+..|+.-+.|+++++||+..
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCeEEEEecCCEEEEEecCC
Confidence 58899999999999999864
No 411
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.94 E-value=0.74 Score=43.97 Aligned_cols=152 Identities=7% Similarity=-0.005 Sum_probs=88.6
Q ss_pred cceEEEEEcCCCCcEEEE--EeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC--eEEEe
Q 021484 31 IRLNAIVIDPRNPNYFAV--GGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE--LLISY 106 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~s~ 106 (312)
.++..+...+++ ...++ .+.+..|..||+++-....... ...++.............++.|+|.-. .++..
T Consensus 101 ~pi~~~v~~~D~-t~s~v~~tsng~~v~~fD~~~fs~s~~~~----~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l 175 (1405)
T KOG3630|consen 101 IPIVIFVCFHDA-TDSVVVSTSNGEAVYSFDLEEFSESRYET----TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL 175 (1405)
T ss_pred ccceEEEeccCC-ceEEEEEecCCceEEEEehHhhhhhhhhh----ccccccccchhccccccccccccCCccchhhhhc
Confidence 355666666665 33333 3444578889998654211100 111111111122234456788988764 33344
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
.|+.|++..+.... .....+. .. ..+++++| +|.|++++.|-..|++.-|-.. .+....+
T Consensus 176 ~dlsl~V~~~~~~~---------------~~v~s~p-~t--~~~Tav~W-SprGKQl~iG~nnGt~vQy~P~-leik~~i 235 (1405)
T KOG3630|consen 176 SDLSLRVKSTKQLA---------------QNVTSFP-VT--NSQTAVLW-SPRGKQLFIGRNNGTEVQYEPS-LEIKSEI 235 (1405)
T ss_pred cccchhhhhhhhhh---------------hhhcccC-cc--cceeeEEe-ccccceeeEecCCCeEEEeecc-cceeecc
Confidence 79999988775320 1222222 12 23899999 9999999999999999888754 4444444
Q ss_pred ecC----ccceEEEEEcCCCCeEEE
Q 021484 187 VGD----RHVVNQLEPHPHIPMFAT 207 (312)
Q Consensus 187 ~~~----~~~v~~~~~~p~~~~l~t 207 (312)
.+. ...|.+|.|-....+++.
T Consensus 236 p~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 236 PEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cCCCcCCCcceeEEEEecceeEEEE
Confidence 321 367899999777666443
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.86 E-value=0.24 Score=27.15 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=25.3
Q ss_pred cceEEEEEcCCCC---eEEEEeCCCcEEEccCCC
Q 021484 191 HVVNQLEPHPHIP---MFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 191 ~~v~~~~~~p~~~---~l~t~~~d~~i~iwd~~~ 221 (312)
+.|.++.|+|... +|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998654 677777789999999985
No 413
>PRK13684 Ycf48-like protein; Provisional
Probab=93.77 E-value=3.6 Score=34.65 Aligned_cols=155 Identities=12% Similarity=0.078 Sum_probs=84.2
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEE-EccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVY-DIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d 108 (312)
...+.++.+.|++ .+++++ ..|.+..- +-....+ .. ....-...++++.+.+++..++.+..
T Consensus 172 ~g~~~~i~~~~~g-~~v~~g-~~G~i~~s~~~gg~tW-------------~~--~~~~~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAVS-SRGNFYSTWEPGQTAW-------------TP--HQRNSSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred cceEEEEEECCCC-eEEEEe-CCceEEEEcCCCCCeE-------------EE--eeCCCcccceeeeEcCCCCEEEEecC
Confidence 4568889999976 555554 45655431 2111111 11 11223467889999999998888877
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
|.+++=....+. +.+... .........+..+.+ .+++..+++ +.+|.+. .....++.-.....
T Consensus 235 G~~~~~s~d~G~-------------sW~~~~-~~~~~~~~~l~~v~~-~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~ 297 (334)
T PRK13684 235 GQIRFNDPDDLE-------------SWSKPI-IPEITNGYGYLDLAY-RTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPV 297 (334)
T ss_pred CEEEEccCCCCC-------------cccccc-CCccccccceeeEEE-cCCCCEEEE-cCCCeEE-EeCCCCCCCeECCc
Confidence 776532233320 001111 110001122778888 777775554 4567664 34454544333321
Q ss_pred ---CccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484 189 ---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 189 ---~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
-....+.+.|..+++.+++| ..|.|--|+-
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~G-~~G~il~~~~ 330 (334)
T PRK13684 298 GEEVPSNFYKIVFLDPEKGFVLG-QRGVLLRYVG 330 (334)
T ss_pred CCCCCcceEEEEEeCCCceEEEC-CCceEEEecC
Confidence 22357788888777776655 5788877764
No 414
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.55 E-value=4.2 Score=34.62 Aligned_cols=171 Identities=12% Similarity=0.178 Sum_probs=77.5
Q ss_pred ecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCCcEEEEEeC---CC-eEEEEEccCCeecCCCCCCCCccccc
Q 021484 4 FDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNPNYFAVGGS---DE-YARVYDIRKCHWYSPISSDTPVDTFC 79 (312)
Q Consensus 4 wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~~~~~---dg-~i~iwd~~~~~~~~~~~~~~~~~~~~ 79 (312)
.|+.+++...++.. ..-+.-+-|+|..+.+|+-+.+ +. .-|||-+++..- ....
T Consensus 173 idl~tG~~~~v~~~------------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~--------~~~~-- 230 (386)
T PF14583_consen 173 IDLKTGERKVVFED------------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS--------NVKK-- 230 (386)
T ss_dssp EETTT--EEEEEEE------------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-----------EE--
T ss_pred EECCCCceeEEEec------------CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCC--------ccee--
Confidence 45666655455443 2236778999988777777543 33 236776654320 0000
Q ss_pred ccccccCCCccEEEEEEccCCCeEEE-e--c---CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEE
Q 021484 80 PRHLIGKNNIHITGLAYSNTSELLIS-Y--N---DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGV 153 (312)
Q Consensus 80 ~~~~~~~~~~~i~~~~~~~~~~~l~s-~--~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 153 (312)
... ......+.---|.|+|..+.- + . +..|.-+|+.++ +...... ... ....
T Consensus 231 v~~--~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~----------------~~~~~~~--~p~--~~H~ 288 (386)
T PF14583_consen 231 VHR--RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTG----------------ERRRLME--MPW--CSHF 288 (386)
T ss_dssp SS-----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT------------------EEEEEE--E-S--EEEE
T ss_pred eec--CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCC----------------CceEEEe--CCc--eeee
Confidence 000 111344555568999974332 2 1 334666677665 2222111 111 2233
Q ss_pred EEecCCCCEEEEeccC----------------ceEEEEeccCCeeEEEe---------ecCcc-ceEEEEEcCCCCe-EE
Q 021484 154 NFFGPNDEYVMSGSDC----------------GHLFIWKKKGGKLVRLM---------VGDRH-VVNQLEPHPHIPM-FA 206 (312)
Q Consensus 154 ~~~s~~~~~l~~~~~d----------------g~v~iwd~~~~~~~~~~---------~~~~~-~v~~~~~~p~~~~-l~ 206 (312)
.- ++++++++-=+.| ..|+++++..++..... .++.. .=-.+.|+||+++ |.
T Consensus 289 ~s-s~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF 367 (386)
T PF14583_consen 289 MS-SPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLF 367 (386)
T ss_dssp EE--TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEE
T ss_pred EE-cCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEE
Confidence 33 7888877643332 24667787766543211 11111 1135789999998 55
Q ss_pred EEeCCCcEEEccC
Q 021484 207 TCGIEKTVKLWAP 219 (312)
Q Consensus 207 t~~~d~~i~iwd~ 219 (312)
++...|...||-+
T Consensus 368 ~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 368 RSDMEGPPAVYLV 380 (386)
T ss_dssp EE-TTSS-EEEEE
T ss_pred ECCCCCCccEEEE
Confidence 6667887777643
No 415
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.53 E-value=3.7 Score=33.93 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=58.1
Q ss_pred CCccEEEEEEccCCCeEEEecCCcEE-EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021484 87 NNIHITGLAYSNTSELLISYNDELVY-LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 165 (312)
Q Consensus 87 ~~~~i~~~~~~~~~~~l~s~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~ 165 (312)
-...+..+.-+++|++++.+..|.++ -|+.... .-+... ......|..+.| .+++.+.+.
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~-----------------~w~~~~-r~~~~riq~~gf-~~~~~lw~~ 203 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT-----------------TWQPHN-RNSSRRIQSMGF-SPDGNLWML 203 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S-----------------S-EEEE---SSS-EEEEEE--TTS-EEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCc-----------------cceEEc-cCccceehhcee-cCCCCEEEE
Confidence 34678888899999999998877665 6665321 111111 112245999999 899887665
Q ss_pred eccCceEEEEe-ccCCeeEEE----eecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484 166 GSDCGHLFIWK-KKGGKLVRL----MVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 166 ~~~dg~v~iwd-~~~~~~~~~----~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~i 216 (312)
+ ..|.|++=+ ....+.... +....-.+.+++|.+++...++|+ .|++..
T Consensus 204 ~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~ 257 (302)
T PF14870_consen 204 A-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV 257 (302)
T ss_dssp E-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE
T ss_pred e-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE
Confidence 5 788888877 222222111 111223478999999988888776 444433
No 416
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=1.1 Score=39.15 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=49.4
Q ss_pred eeEEEEecCCCCEEEEeccCceEEEEe---------ccCCeeEE---Eee------cCc--cceEEEEEcCCC---CeEE
Q 021484 150 VKGVNFFGPNDEYVMSGSDCGHLFIWK---------KKGGKLVR---LMV------GDR--HVVNQLEPHPHI---PMFA 206 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~iwd---------~~~~~~~~---~~~------~~~--~~v~~~~~~p~~---~~l~ 206 (312)
|..+.. ++.|..++..+.+|.+.++= +.+|++.. ++. ... -.+..++|||+. ..+.
T Consensus 106 V~~vl~-s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 106 VYQVLL-SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEe-cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 667776 89999999999999876654 22343321 111 111 235678999986 4577
Q ss_pred EEeCCCcEEEccCCCC
Q 021484 207 TCGIEKTVKLWAPMPT 222 (312)
Q Consensus 207 t~~~d~~i~iwd~~~~ 222 (312)
.-+.|.+||+||+...
T Consensus 185 iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEecCcEEEEEecCCc
Confidence 7788999999998754
No 417
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.00 E-value=3.3 Score=34.88 Aligned_cols=111 Identities=14% Similarity=0.306 Sum_probs=56.7
Q ss_pred cEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC---CCEEEEe
Q 021484 90 HITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN---DEYVMSG 166 (312)
Q Consensus 90 ~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~---~~~l~~~ 166 (312)
..++|+|.|+|+++++-..|.|++++....... . +.. ......... .-+..+++ +|+ ..+|...
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~-----~---v~~--~~~v~~~~~--~gllgia~-~p~f~~n~~lYv~ 69 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKT-----P---VAD--LPEVFADGE--RGLLGIAF-HPDFASNGYLYVY 69 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECE-----E---EEE---TTTBTSTT--BSEEEEEE--TTCCCC-EEEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcc-----e---ecc--ccccccccc--CCccccee-ccccCCCCEEEEE
Confidence 457899999999999878999999993322000 0 000 001111122 23789998 673 3344333
Q ss_pred cc-C--------ceEEEEeccCC-------eeE-EEeec---CccceEEEEEcCCCCeEEEEeCCCc
Q 021484 167 SD-C--------GHLFIWKKKGG-------KLV-RLMVG---DRHVVNQLEPHPHIPMFATCGIEKT 213 (312)
Q Consensus 167 ~~-d--------g~v~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~~p~~~~l~t~~~d~~ 213 (312)
.. . ..|.-|....+ +.+ ..+.. ....-..|.|.|+|.+.++.+..+.
T Consensus 70 ~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 70 YTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred EEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 32 1 23444444333 111 12222 2234567999999987666664433
No 418
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.99 E-value=9 Score=36.84 Aligned_cols=106 Identities=8% Similarity=0.022 Sum_probs=64.5
Q ss_pred EEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEE
Q 021484 94 LAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLF 173 (312)
Q Consensus 94 ~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~ 173 (312)
.+..|...++.++-...+++|++... ++++......-+..|+.+.+ .+..+++|...-.+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K----------------~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~ 999 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKK----------------KLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVH 999 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChH----------------HHHhhhhhccCceEEEEEee---cceEEEEeeccceEE
Confidence 35567777888888899999999876 55554443333345888876 466777777655555
Q ss_pred EE--eccCCeeEEEeecCc--cceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484 174 IW--KKKGGKLVRLMVGDR--HVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 174 iw--d~~~~~~~~~~~~~~--~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
++ +....+. ..+.... ..|+++.+ -+...+|.+..=|.+.+-.+.
T Consensus 1000 ~~~y~~~~n~l-~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1000 FVRYRREDNQL-IVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred EEEEecCCCeE-EEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECC
Confidence 54 4443443 3443222 24554443 355567777666666666544
No 419
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.77 E-value=2.3 Score=38.77 Aligned_cols=108 Identities=11% Similarity=0.139 Sum_probs=66.2
Q ss_pred eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee-cCccceEEEEEc--CCCCeEEEEeCCCcEEEccCCC-----
Q 021484 150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV-GDRHVVNQLEPH--PHIPMFATCGIEKTVKLWAPMP----- 221 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~--p~~~~l~t~~~d~~i~iwd~~~----- 221 (312)
..-+.- +.-++..++-+....+.|||.+.+.....-. ...+.|.++.|. |+++.+++.|....|.+|.-..
T Consensus 32 ~~li~g-ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISG-SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEee-cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 444444 4456666666667789999999887543322 345789999985 7888888999999999986321
Q ss_pred C--C---C--CCCCCChhhhhhhhccCCCCceeEEecCCceEEEEE
Q 021484 222 T--D---F--PPLPDNAEKIMKANKQGREDHSRITLTPDVIMHVLR 260 (312)
Q Consensus 222 ~--~---~--~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~ 260 (312)
. . + ..+..++...+....|..++.++++. ++.+.|++
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEEC
Confidence 1 1 1 11223343334445566666666554 44455554
No 420
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.71 E-value=3.6 Score=35.20 Aligned_cols=104 Identities=18% Similarity=0.292 Sum_probs=55.3
Q ss_pred ccEEEEEEccCCCeEEEec------------CC-cEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEE
Q 021484 89 IHITGLAYSNTSELLISYN------------DE-LVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNF 155 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~------------d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 155 (312)
.....|+|.++|+++++.. .+ .|.+++-.++.+.. .....+..... ....+++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~------------d~~~vfa~~l~--~p~Gi~~ 79 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY------------DKSNVFAEELS--MVTGLAV 79 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc------------ceeEEeecCCC--CccceeE
Confidence 3456889999999877742 22 67766544321100 12233332222 2678888
Q ss_pred ecCCCCEEEEeccCceEEEEeccC-----Cee--E-EEeec----CccceEEEEEcCCCCeEEEEe
Q 021484 156 FGPNDEYVMSGSDCGHLFIWKKKG-----GKL--V-RLMVG----DRHVVNQLEPHPHIPMFATCG 209 (312)
Q Consensus 156 ~s~~~~~l~~~~~dg~v~iwd~~~-----~~~--~-~~~~~----~~~~v~~~~~~p~~~~l~t~~ 209 (312)
.+++ |+++......++.|... ++. + ..+.. +......++|.|+|.+.++.+
T Consensus 80 -~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 80 -AVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred -ecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 6777 44444443333445431 121 2 22222 124467899999998865544
No 421
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=92.41 E-value=5.9 Score=33.28 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=89.6
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCe------EEEEEccCCeecCCCCCCCCcccccccccccC-------CCccEEEEEE
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEY------ARVYDIRKCHWYSPISSDTPVDTFCPRHLIGK-------NNIHITGLAY 96 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~ 96 (312)
-+.+..+.+.|++ ..+++.+.+|. +..+++....- ....+.......+... ..-..-+|++
T Consensus 19 ~GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~ 92 (326)
T PF13449_consen 19 FGGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQG-----GIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV 92 (326)
T ss_pred cCcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCC-----CccceEeccceeccCCCCCcCCcCCCChhHeEE
Confidence 4678999999766 45666677777 66556553110 0000100000011000 0113447888
Q ss_pred ccCCCeEEEec-C------CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc-
Q 021484 97 SNTSELLISYN-D------ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD- 168 (312)
Q Consensus 97 ~~~~~~l~s~~-d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~- 168 (312)
.++|.++++.. + ..|+.++.. +.......++..-....... .+.....-..++++ +|+|+.|+++.+
T Consensus 93 ~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~---~~~~~N~G~E~la~-~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 93 PPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGT---SGRRNNRGFEGLAV-SPDGRTLFAAMES 167 (326)
T ss_pred ecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCcc---ccccCCCCeEEEEE-CCCCCEEEEEECc
Confidence 78888888874 6 778888876 31100000110000000000 11112223889998 999997666543
Q ss_pred ----Cc--e-------EEE--EeccC-CeeEEEe----ec-----CccceEEEEEcCCCCeEEEE-----eCCCcEEEcc
Q 021484 169 ----CG--H-------LFI--WKKKG-GKLVRLM----VG-----DRHVVNQLEPHPHIPMFATC-----GIEKTVKLWA 218 (312)
Q Consensus 169 ----dg--~-------v~i--wd~~~-~~~~~~~----~~-----~~~~v~~~~~~p~~~~l~t~-----~~d~~i~iwd 218 (312)
|+ . +++ ||..+ ++....+ .. ....|+.+.+-+++++++.= .....++|+.
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~ 247 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR 247 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence 22 1 444 45544 3232222 21 34578899999999875432 1234555555
Q ss_pred CC
Q 021484 219 PM 220 (312)
Q Consensus 219 ~~ 220 (312)
+.
T Consensus 248 v~ 249 (326)
T PF13449_consen 248 VD 249 (326)
T ss_pred EE
Confidence 43
No 422
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.36 E-value=1.3 Score=33.34 Aligned_cols=31 Identities=16% Similarity=0.105 Sum_probs=25.5
Q ss_pred cceEEEEEcCCC------CeEEEEeCCCcEEEccCCC
Q 021484 191 HVVNQLEPHPHI------PMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 191 ~~v~~~~~~p~~------~~l~t~~~d~~i~iwd~~~ 221 (312)
..|..++|||.| -+|++...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478899999965 2488888999999998764
No 423
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.32 E-value=5 Score=32.26 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=80.1
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP 122 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 122 (312)
.++...-.++...+||..+.+.. ..|. . ...=..++ .+++.|+.+ ....++.+|..+.
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~---------~~~~-----y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f--- 159 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKI---------GTFP-----Y--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETF--- 159 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEE---------EEEE--------SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT----
T ss_pred EEEEEEecCCeEEEEccccceEE---------EEEe-----c--CCcceEEE--cCCCEEEEECCccceEEECCccc---
Confidence 56777778999999999887632 1111 1 12234555 566655555 5889999998765
Q ss_pred CCCcCCcccccCCCCCceEecccCCc---eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec-----------
Q 021484 123 SPLSLSPEDLQKREEPQVYSGHRNSQ---TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG----------- 188 (312)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----------- 188 (312)
+..+.+....... .+.-+.|. +|...|=.-....|...|..+|+.+..+..
T Consensus 160 -------------~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~ 224 (264)
T PF05096_consen 160 -------------KEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDK 224 (264)
T ss_dssp -------------SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTT
T ss_pred -------------ceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccc
Confidence 4444444333222 26667773 677667666778899999999998876631
Q ss_pred -C---ccceEEEEEcCCCCeEEEEe
Q 021484 189 -D---RHVVNQLEPHPHIPMFATCG 209 (312)
Q Consensus 189 -~---~~~v~~~~~~p~~~~l~t~~ 209 (312)
+ ..-.+.+++.|..+.|...+
T Consensus 225 ~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 225 SRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp ST--TTS-EEEEEEETTTTEEEEEE
T ss_pred cccccCCeeEeEeEeCCCCEEEEEe
Confidence 0 23468999999877754444
No 424
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.06 E-value=5.7 Score=32.32 Aligned_cols=117 Identities=9% Similarity=0.117 Sum_probs=75.7
Q ss_pred CCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021484 87 NNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 165 (312)
Q Consensus 87 ~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~ 165 (312)
-...+.+++|+|+.+.|.+. ....-.++=...+ +.++++.-..- .....+.| -.++++.++
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G----------------dlirtiPL~g~-~DpE~Iey-ig~n~fvi~ 145 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG----------------DLIRTIPLTGF-SDPETIEY-IGGNQFVIV 145 (316)
T ss_pred ccccccceeeCCCcceEEEecCCCceEEEEecCC----------------ceEEEeccccc-CChhHeEE-ecCCEEEEE
Confidence 34559999999999866664 5444444433334 45555542211 11456777 677888888
Q ss_pred eccCceEEEEeccCCeeEE-------Eee--cC-ccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484 166 GSDCGHLFIWKKKGGKLVR-------LMV--GD-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 166 ~~~dg~v~iwd~~~~~~~~-------~~~--~~-~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
--.++.+.++.+.....+. .+. .+ +...-.++|.|..+.|..+=+-.=++||....
T Consensus 146 dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 146 DERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred ehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 8889999998766442211 111 12 45677899999999888887777777776553
No 425
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=91.41 E-value=6.7 Score=31.83 Aligned_cols=205 Identities=11% Similarity=0.052 Sum_probs=101.8
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCC-CCCcccccccccccCCCccEEEEE--EccCC-CeEEEe
Q 021484 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISS-DTPVDTFCPRHLIGKNNIHITGLA--YSNTS-ELLISY 106 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~-~~l~s~ 106 (312)
.+|..+...|+- +.+++- .|+.++++++..-........ ..+... ..... ......+...+ -...+ ..|+.+
T Consensus 36 ~~I~ql~vl~~~-~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~-~~~~~-~~~~~~v~~f~~~~~~~~~~~L~va 111 (275)
T PF00780_consen 36 SSITQLSVLPEL-NLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSR-SLPTK-LPETKGVSFFAVNGGHEGSRRLCVA 111 (275)
T ss_pred ceEEEEEEeccc-CEEEEE-cCCccEEEEchhhccccccccccccccc-ccccc-ccccCCeeEEeeccccccceEEEEE
Confidence 358999998876 444443 359999999986653221100 000000 00000 11123344444 11222 466777
Q ss_pred cCCcEEEEEcCCCcCCCCCcCCcccccCC-CCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEE
Q 021484 107 NDELVYLFEKNMGLGPSPLSLSPEDLQKR-EEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 107 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
....|.+|...... ... +..+.+.-. ..+..++| . ++.++.|.. ....+.|+.++.....
T Consensus 112 ~kk~i~i~~~~~~~------------~~f~~~~ke~~lp---~~~~~i~~-~--~~~i~v~~~-~~f~~idl~~~~~~~l 172 (275)
T PF00780_consen 112 VKKKILIYEWNDPR------------NSFSKLLKEISLP---DPPSSIAF-L--GNKICVGTS-KGFYLIDLNTGSPSEL 172 (275)
T ss_pred ECCEEEEEEEECCc------------ccccceeEEEEcC---CCcEEEEE-e--CCEEEEEeC-CceEEEecCCCCceEE
Confidence 77788888876531 001 122333322 34889998 3 667777764 4477889887765443
Q ss_pred eecC------------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCC--CCCCChhhhhhhhccCCCCceeEEec
Q 021484 186 MVGD------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFP--PLPDNAEKIMKANKQGREDHSRITLT 251 (312)
Q Consensus 186 ~~~~------------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~s~~ 251 (312)
+... ..++..+.. +++.+|+.- |..-.+-|..+.... .+. -......... ...++++..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~-W~~~p~~~~~---~~pyli~~~ 245 (275)
T PF00780_consen 173 LDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKNGEPSRKSTIQ-WSSAPQSVAY---SSPYLIAFS 245 (275)
T ss_pred eCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCCCCcCcccEEE-cCCchhEEEE---ECCEEEEEC
Confidence 3211 112333333 344454432 334444444443222 111 0111111121 234888888
Q ss_pred CCceEEEEEecccCc
Q 021484 252 PDVIMHVLRLQRRQT 266 (312)
Q Consensus 252 ~d~~i~i~~~~~~~~ 266 (312)
.++ +.|+++.+.+.
T Consensus 246 ~~~-iEV~~~~~~~l 259 (275)
T PF00780_consen 246 SNS-IEVRSLETGEL 259 (275)
T ss_pred CCE-EEEEECcCCcE
Confidence 866 99999887743
No 426
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.41 E-value=1.3 Score=23.79 Aligned_cols=40 Identities=8% Similarity=0.046 Sum_probs=27.2
Q ss_pred CCCCEEEEe-ccCceEEEEeccCCeeEEEeecCccceEEEEE
Q 021484 158 PNDEYVMSG-SDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEP 198 (312)
Q Consensus 158 ~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~ 198 (312)
|++++|+++ ..++.|.++|..+++.+..+.... ....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~-~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG-YPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC-CCceEEe
Confidence 456666554 458899999999998888776532 2344544
No 427
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.40 E-value=3.8 Score=35.39 Aligned_cols=120 Identities=11% Similarity=0.114 Sum_probs=70.3
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecC
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYND 108 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d 108 (312)
-+++|.++.|++++ +.+|+--.+.+|.+++....+.... ..+..+..+..|....|+.+.. +|--.+
T Consensus 65 d~G~I~SIkFSlDn-kilAVQR~~~~v~f~nf~~d~~~l~-----------~~~~ck~k~~~IlGF~W~~s~e-~A~i~~ 131 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDN-KILAVQRTSKTVDFCNFIPDNSQLE-----------YTQECKTKNANILGFCWTSSTE-IAFITD 131 (657)
T ss_pred CCCceeEEEeccCc-ceEEEEecCceEEEEecCCCchhhH-----------HHHHhccCcceeEEEEEecCee-EEEEec
Confidence 35699999999999 8999999999999999854431000 0000023345688999988754 333334
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec--cCceEEEEeccC
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS--DCGHLFIWKKKG 179 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~--~dg~v~iwd~~~ 179 (312)
.-+-+|...... ..++..+.+... |.--.| .++-+.++.++ ..+.+.-+.+++
T Consensus 132 ~G~e~y~v~pek---------------rslRlVks~~~n--vnWy~y-c~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 132 QGIEFYQVLPEK---------------RSLRLVKSHNLN--VNWYMY-CPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred CCeEEEEEchhh---------------hhhhhhhhcccC--ccEEEE-ccccceEeeeccccccccccEEEee
Confidence 445555543321 244444555544 666667 56665544333 344444444443
No 428
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.36 E-value=0.031 Score=47.78 Aligned_cols=147 Identities=14% Similarity=0.160 Sum_probs=97.9
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEE-e-cCCc
Q 021484 33 LNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS-Y-NDEL 110 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s-~-~d~~ 110 (312)
.....|-|.+. -++.++.+..+..||-.... +.. ...+.....++|..++..++. + ..+.
T Consensus 37 pi~~~w~~e~~-nlavaca~tiv~~YD~agq~-~le----------------~n~tg~aldm~wDkegdvlavlAek~~p 98 (615)
T KOG2247|consen 37 PIIHRWRPEGH-NLAVACANTIVIYYDKAGQV-ILE----------------LNPTGKALDMAWDKEGDVLAVLAEKTGP 98 (615)
T ss_pred cceeeEecCCC-ceehhhhhhHHHhhhhhcce-ecc----------------cCCchhHhhhhhccccchhhhhhhcCCC
Confidence 34567788874 47778888889999965332 111 122445567888888875554 4 5899
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEe-cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecC
Q 021484 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS-GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGD 189 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 189 (312)
+++||+.+. -.+.+. +.... -.-+.| ++....++.+...|.+.+++..+.+.+-..-.|
T Consensus 99 iylwd~n~e-----------------ytqqLE~gg~~s--~sll~w-sKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh 158 (615)
T KOG2247|consen 99 IYLWDVNSE-----------------YTQQLESGGTSS--KSLLAW-SKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKH 158 (615)
T ss_pred eeechhhhh-----------------hHHHHhccCcch--HHHHhh-ccCCccccccccccceEEEeccchhhhhhhccc
Confidence 999999875 222222 11111 122566 888999999999999999998887766555448
Q ss_pred ccceEEEEEcCCCCeEEEEeCCCcEEEcc
Q 021484 190 RHVVNQLEPHPHIPMFATCGIEKTVKLWA 218 (312)
Q Consensus 190 ~~~v~~~~~~p~~~~l~t~~~d~~i~iwd 218 (312)
..+++++++.+.+.. +.++.|..+.+-.
T Consensus 159 ~RRgtq~av~lEd~v-il~dcd~~L~v~~ 186 (615)
T KOG2247|consen 159 QRRGTQIAVTLEDYV-ILCDCDNTLSVTT 186 (615)
T ss_pred ccceeEEEeccccee-eecCcHHHHHHhh
Confidence 889999999988644 4444455444433
No 429
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.25 E-value=2.9 Score=37.27 Aligned_cols=71 Identities=10% Similarity=0.081 Sum_probs=43.4
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe--cCCcE
Q 021484 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY--NDELV 111 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~--~d~~i 111 (312)
..+.|||.. .+|++-.....-.+++++.... .++.- ....+-|.|.+|.+||+.|+.+ +.=.-
T Consensus 116 QGCVWHPk~-~iL~VLT~~dvSV~~sV~~d~s-------------rVkaD-i~~~G~IhCACWT~DG~RLVVAvGSsLHS 180 (671)
T PF15390_consen 116 QGCVWHPKK-AILTVLTARDVSVLPSVHCDSS-------------RVKAD-IKTSGLIHCACWTKDGQRLVVAVGSSLHS 180 (671)
T ss_pred CcccccCCC-ceEEEEecCceeEeeeeeeCCc-------------eEEEe-ccCCceEEEEEecCcCCEEEEEeCCeEEE
Confidence 467899987 4655544433333466654321 11111 2336789999999999866654 45567
Q ss_pred EEEEcCCC
Q 021484 112 YLFEKNMG 119 (312)
Q Consensus 112 ~iwd~~~~ 119 (312)
++||-...
T Consensus 181 yiWd~~qK 188 (671)
T PF15390_consen 181 YIWDSAQK 188 (671)
T ss_pred EEecCchh
Confidence 89986543
No 430
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.12 E-value=5.9 Score=30.67 Aligned_cols=103 Identities=10% Similarity=0.075 Sum_probs=62.2
Q ss_pred CeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccC---c---eEEE
Q 021484 101 ELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDC---G---HLFI 174 (312)
Q Consensus 101 ~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~d---g---~v~i 174 (312)
.++++.....|.+|++.... .++...|..- +.|..+.+ +..|+||++--.+ . .+++
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~--------------~~~~~~F~Tv---~~V~~l~y-~~~GDYlvTlE~k~~~~~~~fvR~ 91 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEE--------------CPLLCTFSTV---GRVLQLVY-SEAGDYLVTLEEKNKRSPVDFVRA 91 (215)
T ss_pred eEEEEcCCCEEEEEEcccCC--------------CceeEEEcch---hheeEEEe-ccccceEEEEEeecCCccceEEEE
Confidence 35455677889999998431 1344444433 33889998 8999999986432 2 5666
Q ss_pred E-eccC----CeeEE-EeecC---------------------ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484 175 W-KKKG----GKLVR-LMVGD---------------------RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 175 w-d~~~----~~~~~-~~~~~---------------------~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
| +++. .+++. .+.+| ..++.+++..|...-|+.|+ ++++.+|.+..+
T Consensus 92 Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 92 YFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred EEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence 5 2221 12222 11121 23567788888655555555 578999987654
No 431
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.10 E-value=5.9 Score=30.66 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=32.1
Q ss_pred EEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe
Q 021484 45 YFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY 106 (312)
Q Consensus 45 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~ 106 (312)
.|..+...+.|.+|++....+ .+...| ..-+.|..+.++..|.+|++-
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~-------~~~~~F-------~Tv~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEEC-------PLLCTF-------STVGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCC-------ceeEEE-------cchhheeEEEeccccceEEEE
Confidence 343436668899999984431 111111 224778999999999999995
No 432
>PRK13684 Ycf48-like protein; Provisional
Probab=91.07 E-value=8.6 Score=32.45 Aligned_cols=107 Identities=11% Similarity=0.000 Sum_probs=60.2
Q ss_pred ccEEEEEEccCCCeEEEecCCcEEEE-EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec
Q 021484 89 IHITGLAYSNTSELLISYNDELVYLF-EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 167 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~ 167 (312)
..+..+.+.|++.+++++..|.++.- +-. + +.-...... ....+..+.+ .++++.++++
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~s~~~g-g----------------~tW~~~~~~-~~~~l~~i~~-~~~g~~~~vg- 232 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYSTWEPG-Q----------------TAWTPHQRN-SSRRLQSMGF-QPDGNLWMLA- 232 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEEEcCCC-C----------------CeEEEeeCC-CcccceeeeE-cCCCCEEEEe-
Confidence 45777888888877777777766542 211 1 111111111 1134888888 7888877665
Q ss_pred cCceEEEEeccCCeeEEEeecC----ccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484 168 DCGHLFIWKKKGGKLVRLMVGD----RHVVNQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 168 ~dg~v~iwd~~~~~~~~~~~~~----~~~v~~~~~~p~~~~l~t~~~d~~i~i 216 (312)
..|.+++=..+.+..-.....+ ...+..+.+.|++..++++ .+|.|..
T Consensus 233 ~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~ 284 (334)
T PRK13684 233 RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV 284 (334)
T ss_pred cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE
Confidence 4576653234444432222211 2357788999987765544 5676654
No 433
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=90.97 E-value=12 Score=35.71 Aligned_cols=120 Identities=8% Similarity=0.044 Sum_probs=72.2
Q ss_pred CCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEE
Q 021484 137 EPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKL 216 (312)
Q Consensus 137 ~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~i 216 (312)
.++....+.-.+.+.++.- -+|+++|.- ...|++|++.+.+.++.--.|..++..+...-.+..++.|..-+.+.+
T Consensus 819 ~L~~v~e~~v~Gav~aL~~--fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 819 SLELVAETVVKGAVYALVE--FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred ceeeeeeeeeccceeehhh--hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 4444443433333555543 367777654 468999999887666655567778888888889999999998888877
Q ss_pred ccCCCCC--CCCCCC--ChhhhhhhhccCCCCceeEEecCCceEEEEEec
Q 021484 217 WAPMPTD--FPPLPD--NAEKIMKANKQGREDHSRITLTPDVIMHVLRLQ 262 (312)
Q Consensus 217 wd~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~ 262 (312)
-..+..+ ...+.. +..++.+. ..-+.+..+-+..++.+.+....
T Consensus 895 l~y~~~eg~f~evArD~~p~Wmtav--eil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 895 LQYKGDEGNFEEVARDYNPNWMTAV--EILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EEEeccCCceEEeehhhCccceeeE--EEecCceEEeecccccEEEEEec
Confidence 6655544 322211 22222221 11234445555566666666543
No 434
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.69 E-value=5.8 Score=38.94 Aligned_cols=160 Identities=11% Similarity=0.086 Sum_probs=86.5
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEE--------EccCCC-eEE
Q 021484 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLA--------YSNTSE-LLI 104 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~-~l~ 104 (312)
..|-+-|.-++.-+ +.|..+.+|+..++...... .+-...|..+. |.|.=+ .|+
T Consensus 82 ~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~~---------------d~~shtIl~V~LvkPkpgvFv~~IqhlLv 144 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAEY---------------DGLSHTILKVGLVKPKPGVFVPEIQHLLV 144 (1311)
T ss_pred eeeccchhhcceEE--EeCCeEEEEEcCCCCccccc---------------cchhhhheeeeeecCCCCcchhhhheeEE
Confidence 34444454323333 35789999999985421111 22223333332 223223 444
Q ss_pred EecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEecc--C---
Q 021484 105 SYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKK--G--- 179 (312)
Q Consensus 105 s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~--~--- 179 (312)
.+.--.|.++-+.-...+.... .....++-..++..|.++.+ ..+|+.+++|- ||.|+-.-.. .
T Consensus 145 vaT~~ei~ilgV~~~~~~~~~~---------~f~~~~~i~~dg~~V~~I~~-t~nGRIF~~G~-dg~lyEl~Yq~~~gWf 213 (1311)
T KOG1900|consen 145 VATPVEIVILGVSFDEFTGELS---------IFNTSFKISVDGVSVNCITY-TENGRIFFAGR-DGNLYELVYQAEDGWF 213 (1311)
T ss_pred ecccceEEEEEEEeccccCccc---------ccccceeeecCCceEEEEEe-ccCCcEEEeec-CCCEEEEEEeccCchh
Confidence 4556666666554321110000 01111222233345899997 88888877765 4544322111 1
Q ss_pred Ce-e----------------EEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484 180 GK-L----------------VRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 180 ~~-~----------------~~~~~-~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
++ + +..+. .+..+|..+........+.+-+..++|++|++..
T Consensus 214 ~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 214 GSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11 1 11223 4567899999988888899999999999999876
No 435
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.34 E-value=14 Score=33.54 Aligned_cols=72 Identities=8% Similarity=0.078 Sum_probs=46.5
Q ss_pred EEEEecCCCCEEEEeccC-----c-----------eEEEEeccCCeeEEEeecCccce---------EEEEEcCCCC---
Q 021484 152 GVNFFGPNDEYVMSGSDC-----G-----------HLFIWKKKGGKLVRLMVGDRHVV---------NQLEPHPHIP--- 203 (312)
Q Consensus 152 ~v~~~s~~~~~l~~~~~d-----g-----------~v~iwd~~~~~~~~~~~~~~~~v---------~~~~~~p~~~--- 203 (312)
..++ ++...+++.+... + .|.-.|+++|+..-.++.....+ .-+....+|+
T Consensus 238 ~~s~-D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~ 316 (527)
T TIGR03075 238 TGSY-DPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRK 316 (527)
T ss_pred ceeE-cCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEE
Confidence 3455 6666666655521 2 67788899999876665322211 1122334665
Q ss_pred eEEEEeCCCcEEEccCCCCCC
Q 021484 204 MFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 204 ~l~t~~~d~~i~iwd~~~~~~ 224 (312)
.++.+..+|.+.+.|..++++
T Consensus 317 ~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 317 LLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeCCCceEEEEECCCCce
Confidence 578889999999999988764
No 436
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.91 E-value=5.4 Score=28.29 Aligned_cols=122 Identities=11% Similarity=0.097 Sum_probs=69.3
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEcc---CC--CeEEEecC
Q 021484 34 NAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSN---TS--ELLISYND 108 (312)
Q Consensus 34 ~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~--~~l~s~~d 108 (312)
..-+|....+ .|+.++.-|+|.|++.......... ...+++.+ .-...|++|+-.+ +. ..|+.++.
T Consensus 2 aiGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~-~~~~i~~L-------Nin~~italaaG~l~~~~~~D~LliGt~ 72 (136)
T PF14781_consen 2 AIGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGR-QDSDISFL-------NINQEITALAAGRLKPDDGRDCLLIGTQ 72 (136)
T ss_pred eEEEeCCCce-eEEEEecCCEEEEECCCcccccccc-ccCceeEE-------ECCCceEEEEEEecCCCCCcCEEEEecc
Confidence 3456777774 7888888899999998754321110 11122111 1245677776544 22 48888999
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEe--cCCCCEEEEeccCceEEEEeccCCeeE
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFF--GPNDEYVMSGSDCGHLFIWKKKGGKLV 183 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~--s~~~~~l~~~~~dg~v~iwd~~~~~~~ 183 (312)
..+..||+.... - .-++.-.+. |.++.+- .....-|+..+....|.-||..-.+..
T Consensus 73 t~llaYDV~~N~----------------d-~Fyke~~DG--vn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 73 TSLLAYDVENNS----------------D-LFYKEVPDG--VNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred ceEEEEEcccCc----------------h-hhhhhCccc--eeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 999999998761 1 112222333 5666551 222233444445667777776644433
No 437
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.76 E-value=19 Score=34.37 Aligned_cols=129 Identities=11% Similarity=0.106 Sum_probs=74.6
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCccccccccc-cc-CCCccEEEEEEccCCCeEEEecC
Q 021484 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHL-IG-KNNIHITGLAYSNTSELLISYND 108 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~i~~~~~~~~~~~l~s~~d 108 (312)
.+..+++|+|.....||+....|...||++.......... -......+ ..+ .. .....-..|.|.++-..|+.++.
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~-~~~~~~~~-gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSN-LRLSRNIS-GSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcc-eeeccCCC-ccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 4677899999877899999999999999992221100000 00000000 001 00 11234557889888888888888
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-CCEEEEeccCceEEEEeccC
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-DEYVMSGSDCGHLFIWKKKG 179 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-~~~l~~~~~dg~v~iwd~~~ 179 (312)
..+.++|+.+. .....+........|.++.- ++. ..+++.-+. ..|.+.++.+
T Consensus 224 ~~l~~~d~~~~----------------~~~~~l~~~~~~~~IlDv~~-~~~~~~~~FiLTs-~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESN----------------WQTEYLVTAKTWSWILDVKR-SPDNPSHVFILTS-KEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCC----------------CccchhccCCChhheeeEEe-cCCccceEEEEec-CeEEEEEccC
Confidence 99999999876 22111222222234777776 554 222222222 5676777665
No 438
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.64 E-value=18 Score=33.80 Aligned_cols=123 Identities=9% Similarity=-0.013 Sum_probs=69.2
Q ss_pred cEEEEEEccCC--CeEEEe-cCCcEEEEEcCCCc-----C--CCCCcCCcccccCCCCCceEecccCCceeeEEEEec--
Q 021484 90 HITGLAYSNTS--ELLISY-NDELVYLFEKNMGL-----G--PSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFG-- 157 (312)
Q Consensus 90 ~i~~~~~~~~~--~~l~s~-~d~~i~iwd~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s-- 157 (312)
.|.-|....-| ++|+.+ .||.|.+|.++.-. . ..... ..-...++-..+... ..++++++ .
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~---~~r~~i~P~f~~~v~---~SaWGLdI-h~~ 174 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG---FSRLKIKPFFHLRVG---ASAWGLDI-HDY 174 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc---cccccCCCCeEeecC---CceeEEEE-Eec
Confidence 35555544433 355555 79999999874311 0 00000 000011122222222 23788988 5
Q ss_pred CCCCEEEEeccCceEEEEeccCC--eeE-EEeecCccceEEEEEcCCC-----C-eEEEEeCCCcEEEccC
Q 021484 158 PNDEYVMSGSDCGHLFIWKKKGG--KLV-RLMVGDRHVVNQLEPHPHI-----P-MFATCGIEKTVKLWAP 219 (312)
Q Consensus 158 ~~~~~l~~~~~dg~v~iwd~~~~--~~~-~~~~~~~~~v~~~~~~p~~-----~-~l~t~~~d~~i~iwd~ 219 (312)
...++||+++....|.||-+... +.. ..-..|...|-+|+|-++. . .+++++-.|.+-+|++
T Consensus 175 ~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 175 KKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred CcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 66788888888888888764431 111 1111255678888887654 2 6888889999888777
No 439
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.56 E-value=19 Score=34.20 Aligned_cols=67 Identities=12% Similarity=-0.000 Sum_probs=49.3
Q ss_pred ceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEe----e-----------c----CccceEEEEEcCCCCeEEEE
Q 021484 148 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLM----V-----------G----DRHVVNQLEPHPHIPMFATC 208 (312)
Q Consensus 148 ~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~----~-----------~----~~~~v~~~~~~p~~~~l~t~ 208 (312)
+.|.++.. ..-+.+++.+..||+|.++|..+.+.+... . + +-.++..++|||++-.++.-
T Consensus 260 ~~V~si~~-~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITS-PELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEe-cccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 34888876 667889999999999999998776544333 1 0 01133458899999999999
Q ss_pred eCCCcEE
Q 021484 209 GIEKTVK 215 (312)
Q Consensus 209 ~~d~~i~ 215 (312)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9999865
No 440
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=89.48 E-value=9.8 Score=30.63 Aligned_cols=108 Identities=14% Similarity=0.045 Sum_probs=65.4
Q ss_pred cEEEEEEccCCCeEEEec--CCc--EEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEE
Q 021484 90 HITGLAYSNTSELLISYN--DEL--VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMS 165 (312)
Q Consensus 90 ~i~~~~~~~~~~~l~s~~--d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~ 165 (312)
.+.+.++++++..++.-. ++. ++++..... ....+.+. .+..-.| ++++...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-----------------~~~~~~g~----~l~~PS~-d~~g~~W~v 82 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-----------------VRPVLTGG----SLTRPSW-DPDGWVWTV 82 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-----------------ceeeccCC----ccccccc-cCCCCEEEE
Confidence 678899999998666532 444 555544322 22222222 2778888 888887777
Q ss_pred eccCceEEEEe-ccCCeeE-EEeec--CccceEEEEEcCCCCeEEEEe---CCCcEEEccC
Q 021484 166 GSDCGHLFIWK-KKGGKLV-RLMVG--DRHVVNQLEPHPHIPMFATCG---IEKTVKLWAP 219 (312)
Q Consensus 166 ~~~dg~v~iwd-~~~~~~~-~~~~~--~~~~v~~~~~~p~~~~l~t~~---~d~~i~iwd~ 219 (312)
...+....++. ..+++.. ..+.. -...|..+.+||+|..+|... .++.|.+=-+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 83 DDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred EcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 77666666663 2333221 12221 112899999999998866554 3567777644
No 441
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.33 E-value=4.3 Score=36.86 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=28.0
Q ss_pred eeEEEEecC----CCCEEEEeccCceEEEEeccCCeeEEEe
Q 021484 150 VKGVNFFGP----NDEYVMSGSDCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 150 v~~v~~~s~----~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 186 (312)
+..++. +. +..+|++.+.|+++++||+.+++++...
T Consensus 217 ~~~~~~-~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 217 AASLAV-SSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEE------ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred cceEEE-ecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 444554 44 6789999999999999999999996655
No 442
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=89.31 E-value=21 Score=34.26 Aligned_cols=153 Identities=10% Similarity=0.097 Sum_probs=89.1
Q ss_pred ceEEEEEcCCCCcEEEEEeC----------CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCC
Q 021484 32 RLNAIVIDPRNPNYFAVGGS----------DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSE 101 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 101 (312)
.|.++.|..+...++++|+. .|.|.+|.+...+- ++.... ..-.+.+.++.-- +|+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~---------L~~v~e----~~v~Gav~aL~~f-ngk 841 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS---------LELVAE----TVVKGAVYALVEF-NGK 841 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc---------eeeeee----eeeccceeehhhh-CCe
Confidence 45566688774477777752 47788887776220 000000 0012333333211 344
Q ss_pred eEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCe
Q 021484 102 LLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGK 181 (312)
Q Consensus 102 ~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~ 181 (312)
++++-...|++|+..+. +.++.-..+... +..+.. ...+..+++|..-+.+.+...+..+
T Consensus 842 -llA~In~~vrLye~t~~----------------~eLr~e~~~~~~--~~aL~l-~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 842 -LLAGINQSVRLYEWTTE----------------RELRIECNISNP--IIALDL-QVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred -EEEecCcEEEEEEcccc----------------ceehhhhcccCC--eEEEEE-EecCcEEEEeeccceEEEEEEeccC
Confidence 44555678999998776 455555566655 666665 6789999999998888776655433
Q ss_pred --eEEEee-cCccceEEEEEcCCCCeEEEEeCCCcEEEccC
Q 021484 182 --LVRLMV-GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAP 219 (312)
Q Consensus 182 --~~~~~~-~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~ 219 (312)
....-+ -+....+.+.+-.+..+ +.+..+|.+.+-..
T Consensus 902 g~f~evArD~~p~Wmtaveil~~d~y-lgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 902 GNFEEVARDYNPNWMTAVEILDDDTY-LGAENSGNLFTVRK 941 (1096)
T ss_pred CceEEeehhhCccceeeEEEecCceE-EeecccccEEEEEe
Confidence 332222 35566777776655444 44456677766543
No 443
>PRK10115 protease 2; Provisional
Probab=89.21 E-value=20 Score=33.77 Aligned_cols=113 Identities=15% Similarity=0.226 Sum_probs=61.5
Q ss_pred cceEEEEEcCCCCcEEEEE-eC----CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeE-E
Q 021484 31 IRLNAIVIDPRNPNYFAVG-GS----DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELL-I 104 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~-~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~ 104 (312)
-.+..+.|+|++ ++|+.+ .. ...|++.|+.+++.. +..+ .. .-..++|.++++.| .
T Consensus 127 ~~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l-------------~~~i-~~---~~~~~~w~~D~~~~~y 188 (686)
T PRK10115 127 YTLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWY-------------PELL-DN---VEPSFVWANDSWTFYY 188 (686)
T ss_pred EEEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCC-------------Cccc-cC---cceEEEEeeCCCEEEE
Confidence 457788999998 566554 22 345888888776521 1111 11 11468999999844 4
Q ss_pred Eec-C-----CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEecc---CceEEEE
Q 021484 105 SYN-D-----ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSD---CGHLFIW 175 (312)
Q Consensus 105 s~~-d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~---dg~v~iw 175 (312)
+.. + ..|+.+++.++.. +....+...... ..-..+.+.++++++..+. ++.+.++
T Consensus 189 ~~~~~~~~~~~~v~~h~lgt~~~--------------~d~lv~~e~~~~--~~~~~~~s~d~~~l~i~~~~~~~~~~~l~ 252 (686)
T PRK10115 189 VRKHPVTLLPYQVWRHTIGTPAS--------------QDELVYEEKDDT--FYVSLHKTTSKHYVVIHLASATTSEVLLL 252 (686)
T ss_pred EEecCCCCCCCEEEEEECCCChh--------------HCeEEEeeCCCC--EEEEEEEcCCCCEEEEEEECCccccEEEE
Confidence 432 2 3577788876510 112234432222 2212222557777664433 4578888
Q ss_pred ec
Q 021484 176 KK 177 (312)
Q Consensus 176 d~ 177 (312)
+.
T Consensus 253 ~~ 254 (686)
T PRK10115 253 DA 254 (686)
T ss_pred EC
Confidence 84
No 444
>PRK10115 protease 2; Provisional
Probab=89.02 E-value=20 Score=33.68 Aligned_cols=109 Identities=6% Similarity=-0.057 Sum_probs=63.4
Q ss_pred ccEEEEEEccCCCeEEEec--CC----cEEEEEcCCCcCCCCCcCCcccccCCCCC-ceEecccCCceeeEEEEecCCCC
Q 021484 89 IHITGLAYSNTSELLISYN--DE----LVYLFEKNMGLGPSPLSLSPEDLQKREEP-QVYSGHRNSQTVKGVNFFGPNDE 161 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~--d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~v~~~s~~~~ 161 (312)
-.+..+.++|+|++|+.+. +| .|++.|+.++ ..+ ..+.+- -..++| .++++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg----------------~~l~~~i~~~-----~~~~~w-~~D~~ 184 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG----------------NWYPELLDNV-----EPSFVW-ANDSW 184 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC----------------CCCCccccCc-----ceEEEE-eeCCC
Confidence 4467789999999777652 33 3888888766 221 122111 135888 78887
Q ss_pred EEEEeccC------ceEEEEeccCC--eeEEEeecCccceE-EEEEcCCCCeEEEEe---CCCcEEEccC
Q 021484 162 YVMSGSDC------GHLFIWKKKGG--KLVRLMVGDRHVVN-QLEPHPHIPMFATCG---IEKTVKLWAP 219 (312)
Q Consensus 162 ~l~~~~~d------g~v~iwd~~~~--~~~~~~~~~~~~v~-~~~~~p~~~~l~t~~---~d~~i~iwd~ 219 (312)
.|+....+ ..|+.+++.++ +-...+........ .+..+.++++++..+ .++.+.+++.
T Consensus 185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 66554332 36778888877 33334443333333 333344777744433 3457888884
No 445
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.99 E-value=8.6 Score=36.40 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=40.9
Q ss_pred CCEEEEeccCceEEEEeccCCeeEEEeecCccce-------------EEEEEcC--CCCeEEEEeC----------CCcE
Q 021484 160 DEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV-------------NQLEPHP--HIPMFATCGI----------EKTV 214 (312)
Q Consensus 160 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v-------------~~~~~~p--~~~~l~t~~~----------d~~i 214 (312)
+..++.++.|+.|.-.|.++|+.+-.+.. .+.| ..+.-.| .+..++.++. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 45788899999999999999998876532 1111 0111122 1334555532 5889
Q ss_pred EEccCCCCC
Q 021484 215 KLWAPMPTD 223 (312)
Q Consensus 215 ~iwd~~~~~ 223 (312)
+-+|.++++
T Consensus 339 ~A~Da~TGk 347 (764)
T TIGR03074 339 RAFDVNTGA 347 (764)
T ss_pred EEEECCCCc
Confidence 999998876
No 446
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.65 E-value=1.9 Score=39.15 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=41.3
Q ss_pred CCCCEEEEeccCceEEEEeccC----CeeEEEe-ec---------------------CccceEEEEEcC----CCCeEEE
Q 021484 158 PNDEYVMSGSDCGHLFIWKKKG----GKLVRLM-VG---------------------DRHVVNQLEPHP----HIPMFAT 207 (312)
Q Consensus 158 ~~~~~l~~~~~dg~v~iwd~~~----~~~~~~~-~~---------------------~~~~v~~~~~~p----~~~~l~t 207 (312)
++...++.+..||.+....... +...... .. ....+..++.++ +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3677788888899888887653 2221111 10 012455666666 6678999
Q ss_pred EeCCCcEEEccCCCCCC
Q 021484 208 CGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 208 ~~~d~~i~iwd~~~~~~ 224 (312)
.+.|+++|+||+.++..
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999998875
No 447
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=88.65 E-value=6.7 Score=36.51 Aligned_cols=101 Identities=10% Similarity=0.098 Sum_probs=52.5
Q ss_pred eEEEEecCCCCEEEEeccCc-----eEEEEec---cCCeeEEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCC
Q 021484 151 KGVNFFGPNDEYVMSGSDCG-----HLFIWKK---KGGKLVRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPT 222 (312)
Q Consensus 151 ~~v~~~s~~~~~l~~~~~dg-----~v~iwd~---~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~ 222 (312)
..++| -|.|..+++-..|| .|.++.. +.|+.-... +....+..++|.-....++.+ ....|++|-....
T Consensus 250 ~~LSW-kpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~-~~n~~~lwttkNy 326 (1243)
T COG5290 250 HQLSW-KPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVA-EGNLLKLWTTKNY 326 (1243)
T ss_pred hcccc-ccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHHh-hcceEEEEEccce
Confidence 45788 89999999877554 3555542 223321111 223455667776655544433 4578999987765
Q ss_pred CCCCCCCChhhhhhhhccCCCCceeEEecCCc
Q 021484 223 DFPPLPDNAEKIMKANKQGREDHSRITLTPDV 254 (312)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 254 (312)
...--....-+-+....|+++...-+-++..+
T Consensus 327 hWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~ 358 (1243)
T COG5290 327 HWYLKVERQIPGISYVKWHPEEKNTLLFRDGE 358 (1243)
T ss_pred EEEEEEeecCCCcceeeeccccCcEEEEecCC
Confidence 43110011111234455777543333333333
No 448
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.48 E-value=9.8 Score=29.38 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=68.7
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cCCcEEEEEcCCCcCC
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-NDELVYLFEKNMGLGP 122 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~ 122 (312)
.+..-.-.+|.-..+|.++.++.. .. .-.+.=+.+ ..+++-|..+ ....++.-|..+-
T Consensus 102 ~~y~LTw~egvaf~~d~~t~~~lg--------------~~--~y~GeGWgL--t~d~~~LimsdGsatL~frdP~tf--- 160 (262)
T COG3823 102 YFYQLTWKEGVAFKYDADTLEELG--------------RF--SYEGEGWGL--TSDDKNLIMSDGSATLQFRDPKTF--- 160 (262)
T ss_pred eEEEEEeccceeEEEChHHhhhhc--------------cc--ccCCcceee--ecCCcceEeeCCceEEEecCHHHh---
Confidence 344455678888888888776321 11 011222233 3455545554 3556666565543
Q ss_pred CCCcCCcccccCCCCCceEecccCC---ceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee------------
Q 021484 123 SPLSLSPEDLQKREEPQVYSGHRNS---QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV------------ 187 (312)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~------------ 187 (312)
....+....... ..+..+.| -+|...+-.-.+..|...+..+|+.+..+.
T Consensus 161 -------------a~~~~v~VT~~g~pv~~LNELE~--VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~ 225 (262)
T COG3823 161 -------------AELDTVQVTDDGVPVSKLNELEW--VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDK 225 (262)
T ss_pred -------------hhcceEEEEECCeecccccceee--eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccc
Confidence 222222211111 12445555 356666655566667777777777665443
Q ss_pred cCccceEEEEEcCCCCe-EEEE
Q 021484 188 GDRHVVNQLEPHPHIPM-FATC 208 (312)
Q Consensus 188 ~~~~~v~~~~~~p~~~~-l~t~ 208 (312)
.|..-.+.+++.|++.. ++||
T Consensus 226 ~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 226 SNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccccccceeecCcCCeEEEec
Confidence 23345678999998854 5555
No 449
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.22 E-value=5 Score=34.80 Aligned_cols=74 Identities=12% Similarity=0.198 Sum_probs=50.8
Q ss_pred eeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccc-eEEEEE-cCCC----------------Ce-EEEEe
Q 021484 149 TVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV-VNQLEP-HPHI----------------PM-FATCG 209 (312)
Q Consensus 149 ~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-v~~~~~-~p~~----------------~~-l~t~~ 209 (312)
.+.+++. +|.+++.++...-|+|.++|+.++..++.+++-.+. +.-+.. .+.. .+ ++-+-
T Consensus 309 ~~~~i~~-sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 309 EGESICL-SPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred eEEEEEE-CCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 3788887 999999999999999999999999888877765431 111111 1111 11 34445
Q ss_pred CCCcEEEccCCCCC
Q 021484 210 IEKTVKLWAPMPTD 223 (312)
Q Consensus 210 ~d~~i~iwd~~~~~ 223 (312)
.-|.|.||.++.+.
T Consensus 388 rRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 388 RRGILEVWSMRQGP 401 (415)
T ss_pred cCCeEEEEecCCCC
Confidence 67889999987764
No 450
>PHA02790 Kelch-like protein; Provisional
Probab=88.13 E-value=19 Score=32.21 Aligned_cols=61 Identities=7% Similarity=0.067 Sum_probs=33.0
Q ss_pred CCCEEEEeccCceEEEEeccCCeeEE--EeecCccceEEEEEcCCCCeEEEEeCC-----CcEEEccCCCCCC
Q 021484 159 NDEYVMSGSDCGHLFIWKKKGGKLVR--LMVGDRHVVNQLEPHPHIPMFATCGIE-----KTVKLWAPMPTDF 224 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~v~~~~~~p~~~~l~t~~~d-----~~i~iwd~~~~~~ 224 (312)
+++..+.| |.+.+||..+.+... .+.........+. -++++.+.||.+ .++..||+.+.+.
T Consensus 407 ~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 407 GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred CCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 45655666 356788887765432 2221111222222 266777777754 3566777776654
No 451
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.66 E-value=14 Score=30.35 Aligned_cols=182 Identities=14% Similarity=0.106 Sum_probs=92.2
Q ss_pred cceEEEEEcCCC-----------CcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccE-EEEEEcc
Q 021484 31 IRLNAIVIDPRN-----------PNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHI-TGLAYSN 98 (312)
Q Consensus 31 ~~v~~~~~~p~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~ 98 (312)
...+.+.|+... ...++.+++||+|.-|...-... .++..+.. +-......| ..+++..
T Consensus 77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t-------~~~~~~~~--~d~s~~gavYkGLAi~~ 147 (336)
T TIGR03118 77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTT-------RMTRAEIV--VDASQQGNVYKGLAVGP 147 (336)
T ss_pred CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcc-------cccccEEE--EccCCCcceeeeeEEee
Confidence 456777777432 13467788999999999643320 00000000 001111222 3455544
Q ss_pred C--CCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEE
Q 021484 99 T--SELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFI 174 (312)
Q Consensus 99 ~--~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~i 174 (312)
. +.+|..+ ..++|-+||-.=........+..-.+...-...-+..-...-+|+-..- .++.+.=+.|..-|.|-+
T Consensus 148 ~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~q-d~~~~d~v~G~G~G~Vdv 226 (336)
T TIGR03118 148 TGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQ-DADRNDEVAGAGLGYVNV 226 (336)
T ss_pred cCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEec-CCcccccccCCCcceEEE
Confidence 3 4555555 4899999986432111111000000000000000000111112332222 444444455666789999
Q ss_pred EeccCCeeEEEeec--CccceEEEEEcC------CCCeEEEEeCCCcEEEccCCCCC
Q 021484 175 WKKKGGKLVRLMVG--DRHVVNQLEPHP------HIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 175 wd~~~~~~~~~~~~--~~~~v~~~~~~p------~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
||+. ++.++.+.. .-.....|+..| .+.+|+---.||+|..||..++.
T Consensus 227 Fd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 227 FTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred EcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 9986 888887742 223456677765 45566666689999999998765
No 452
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.45 E-value=18 Score=31.32 Aligned_cols=110 Identities=9% Similarity=-0.010 Sum_probs=60.8
Q ss_pred EEEEEccCCCeEEEecCCcEEE-EEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCc
Q 021484 92 TGLAYSNTSELLISYNDELVYL-FEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCG 170 (312)
Q Consensus 92 ~~~~~~~~~~~l~s~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg 170 (312)
..+..++++.+++.+..|.+.. ||-.. ..-+... ......+..+.| .+++..++++ ..|
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~-----------------~~W~~~~-~~~~~~l~~v~~-~~dg~l~l~g-~~G 301 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQ-----------------PYWQPHN-RASARRIQNMGW-RADGGLWLLT-RGG 301 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCC-----------------cceEEec-CCCccceeeeeE-cCCCCEEEEe-CCc
Confidence 3455667777777776665443 33211 0001111 111233888988 7888887766 456
Q ss_pred eEEEEeccCCe-----eEEEeec--CccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 171 HLFIWKKKGGK-----LVRLMVG--DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 171 ~v~iwd~~~~~-----~~~~~~~--~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
.+ ++....++ ....... ....++++.|.+++..+++| ..|.+....-....
T Consensus 302 ~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~D~G~t 359 (398)
T PLN00033 302 GL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRSTDGGKS 359 (398)
T ss_pred eE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeCCCCcc
Confidence 65 34444443 2222221 12358899999887766555 57877777644444
No 453
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.99 E-value=15 Score=29.79 Aligned_cols=197 Identities=8% Similarity=-0.012 Sum_probs=111.0
Q ss_pred cceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCc
Q 021484 31 IRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDEL 110 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~ 110 (312)
..-..++-.|+| ..-.++...+.|=-.|..+++.. .+..+.......|..-|+|..-++-...-
T Consensus 62 ~ap~dvapapdG-~VWft~qg~gaiGhLdP~tGev~---------------~ypLg~Ga~Phgiv~gpdg~~Witd~~~a 125 (353)
T COG4257 62 SAPFDVAPAPDG-AVWFTAQGTGAIGHLDPATGEVE---------------TYPLGSGASPHGIVVGPDGSAWITDTGLA 125 (353)
T ss_pred CCccccccCCCC-ceEEecCccccceecCCCCCceE---------------EEecCCCCCCceEEECCCCCeeEecCcce
Confidence 345567777777 56677766666766777777521 11123344455677778876555532224
Q ss_pred EEEEEcCCCcCCCCCcCCcccccCCCCCceEe--cccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec
Q 021484 111 VYLFEKNMGLGPSPLSLSPEDLQKREEPQVYS--GHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 111 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
|.-+|-++. ....|. ............| ++.|++.+++.. |.---.|.. ...+..+..
T Consensus 126 I~R~dpkt~-----------------evt~f~lp~~~a~~nlet~vf-D~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpa 185 (353)
T COG4257 126 IGRLDPKTL-----------------EVTRFPLPLEHADANLETAVF-DPWGNLWFTGQI-GAYGRLDPA-RNVISVFPA 185 (353)
T ss_pred eEEecCccc-----------------ceEEeecccccCCCcccceee-CCCccEEEeecc-ccceecCcc-cCceeeecc
Confidence 444554432 122222 1112233777888 999999988863 111111221 122344433
Q ss_pred C-ccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCCh--hhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 189 D-RHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNA--EKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 189 ~-~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
. ....+.|+-.|+|..-++.-.+..|-.-|...+....+.... ..-....+..+-++..++....+.+..+|-..
T Consensus 186 PqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 186 PQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred CCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc
Confidence 2 235578899999999777667788888888777544333211 22223444455566777766667777776443
No 454
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.86 E-value=27 Score=32.65 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=71.9
Q ss_pred CccceEEEEEcCC-CCcEEEEEeCCCeEEEEEccCCe-ecCCC--CCCC-C-cccccccccccCCCccEEEEEEc--cCC
Q 021484 29 NSIRLNAIVIDPR-NPNYFAVGGSDEYARVYDIRKCH-WYSPI--SSDT-P-VDTFCPRHLIGKNNIHITGLAYS--NTS 100 (312)
Q Consensus 29 h~~~v~~~~~~p~-~~~~l~~~~~dg~i~iwd~~~~~-~~~~~--~~~~-~-~~~~~~~~~~~~~~~~i~~~~~~--~~~ 100 (312)
.+..|+-|....- +...|+.+..||.|.+|.+++-- .+... ..+. . .....+... ..-...+++++++ ...
T Consensus 99 ~PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~-~~v~~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 99 FPHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFH-LRVGASAWGLDIHDYKKS 177 (717)
T ss_pred CCceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeE-eecCCceeEEEEEecCcc
Confidence 3455666665542 22688899999999999874211 00000 0000 0 000011111 2234578999998 666
Q ss_pred CeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC----CC-EEEEeccCceEEE
Q 021484 101 ELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN----DE-YVMSGSDCGHLFI 174 (312)
Q Consensus 101 ~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~----~~-~l~~~~~dg~v~i 174 (312)
++||.++ ...|.||-....... .....-..+... |.+|+|.+.+ |. ++++++-.|.+.+
T Consensus 178 rlIAVSsNs~~VTVFaf~l~~~r-------------~~~~~s~~~~hN--IP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 178 RLIAVSSNSQEVTVFAFALVDER-------------FYHVPSHQHSHN--IPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred eEEEEecCCceEEEEEEeccccc-------------cccccccccccC--CCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 7888874 566666654321000 000000113322 8889884222 32 7888899999999
Q ss_pred Eec
Q 021484 175 WKK 177 (312)
Q Consensus 175 wd~ 177 (312)
|++
T Consensus 243 ~~I 245 (717)
T PF08728_consen 243 FKI 245 (717)
T ss_pred EEE
Confidence 887
No 455
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=86.56 E-value=17 Score=29.96 Aligned_cols=195 Identities=17% Similarity=0.207 Sum_probs=92.2
Q ss_pred eeecccCccceeeEEecccccCCcCCCCccceEEEEEcCCCC-----cEEEEEeCCCeEEEEEccCCeecCCCCC---CC
Q 021484 2 WQFDLRSDSATRLFYCSSFSENSKQPMNSIRLNAIVIDPRNP-----NYFAVGGSDEYARVYDIRKCHWYSPISS---DT 73 (312)
Q Consensus 2 ~~wd~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~ 73 (312)
-+||+++++..+.+.....- . .....+..+.+....+ ..+++=+..+-|.++|+.+++....... ..
T Consensus 37 v~~Dl~t~~li~~~~~p~~~---~--~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~ 111 (287)
T PF03022_consen 37 VAFDLKTNQLIRRYPFPPDI---A--PPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPD 111 (287)
T ss_dssp EEEETTTTCEEEEEE--CCC---S---TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS
T ss_pred EEEECCCCcEEEEEECChHH---c--ccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCccee
Confidence 47888888755555443221 0 0356788898887432 2344445557899999998874322211 00
Q ss_pred C-cccccccccccCCCccEEEEEEcc---CCCeEEEe--cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCC
Q 021484 74 P-VDTFCPRHLIGKNNIHITGLAYSN---TSELLISY--NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNS 147 (312)
Q Consensus 74 ~-~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~s~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (312)
| ...+............+..++.+| +++.|.-. +...++--...--..+ ...... .-....+.+ +.+.
T Consensus 112 p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~---~~~~~~-~~~~~v~~l-G~k~- 185 (287)
T PF03022_consen 112 PDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDP---SLSDAQ-ALASQVQDL-GDKG- 185 (287)
T ss_dssp -SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCST---T--HHH--HHHT-EEE-EE---
T ss_pred ccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCc---cccccc-cccccceec-cccC-
Confidence 0 011110000011133477777766 55555543 2333333332110000 000000 000111122 2221
Q ss_pred ceeeEEEEecCCCCEEEEeccCceEEEEeccCC---eeEEEee-cC--ccceEEEEEcC--CCCeEEEE
Q 021484 148 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG---KLVRLMV-GD--RHVVNQLEPHP--HIPMFATC 208 (312)
Q Consensus 148 ~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~-~~--~~~v~~~~~~p--~~~~l~t~ 208 (312)
.....+++ +++|.++++--..+.|..|+..+. +....+. .. -..+.++++.+ +|.+.+.+
T Consensus 186 ~~s~g~~~-D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 186 SQSDGMAI-DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp -SECEEEE-ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCceEEE-CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 12456777 789999999999999999998751 1122222 11 24678888888 66664444
No 456
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.38 E-value=28 Score=32.40 Aligned_cols=53 Identities=19% Similarity=0.358 Sum_probs=37.9
Q ss_pred CCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCC
Q 021484 51 SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMG 119 (312)
Q Consensus 51 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~ 119 (312)
.--.|+||+.. |+ ....+.-.|. .+..+.|+.+..+|+...+|++++|++...
T Consensus 62 a~~~I~If~~s-G~--------------lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 62 ARPYIRIFNIS-GQ--------------LLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred cceeEEEEecc-cc--------------chHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchh
Confidence 34568888875 43 1222223343 678999999988998899999999998754
No 457
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.32 E-value=25 Score=31.83 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=60.9
Q ss_pred cEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCC
Q 021484 44 NYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPS 123 (312)
Q Consensus 44 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~ 123 (312)
..++.++.++.|+-.|..+++.+.......+...... ......-..+++. ++++++...++.|.-+|..++
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~----~~~~~~~rg~av~-~~~v~v~t~dg~l~ALDa~TG---- 140 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPV----MCCDVVNRGVALY-DGKVFFGTLDARLVALDAKTG---- 140 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccc----cccccccccceEE-CCEEEEEcCCCEEEEEECCCC----
Confidence 4667777788999999999986544322111100000 0000000112222 345555557999999999888
Q ss_pred CCcCCcccccCCCCCceEecc--cCCceeeE-EEEecCCCCEEEEec------cCceEEEEeccCCeeEEEe
Q 021484 124 PLSLSPEDLQKREEPQVYSGH--RNSQTVKG-VNFFGPNDEYVMSGS------DCGHLFIWKKKGGKLVRLM 186 (312)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~-v~~~s~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~ 186 (312)
+.+...... .....+.+ -.. .++ .++.+. .+|.|..+|..+|+.+-.+
T Consensus 141 ------------k~~W~~~~~~~~~~~~~tssP~v--~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 141 ------------KVVWSKKNGDYKAGYTITAAPLV--VKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred ------------CEEeecccccccccccccCCcEE--ECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 444333211 10000111 111 023 344443 2689999999999876554
No 458
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=85.40 E-value=35 Score=32.55 Aligned_cols=55 Identities=7% Similarity=-0.009 Sum_probs=36.0
Q ss_pred CceEEEEeccCCeeEEEeecCccc---------eEEEEEcC-CCC---eEEEEeCCCcEEEccCCCCC
Q 021484 169 CGHLFIWKKKGGKLVRLMVGDRHV---------VNQLEPHP-HIP---MFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 169 dg~v~iwd~~~~~~~~~~~~~~~~---------v~~~~~~p-~~~---~l~t~~~d~~i~iwd~~~~~ 223 (312)
.+.|.-.|.++|+..-.++..... ..-+.+.. +|+ .++.++.+|.+.+.|.++++
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 456777888899887666531111 11122222 553 68888999999999998876
No 459
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.82 E-value=4.7 Score=21.27 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=19.6
Q ss_pred cceEEEEEcCCCCcEEEEEeCC--CeEEEE
Q 021484 31 IRLNAIVIDPRNPNYFAVGGSD--EYARVY 58 (312)
Q Consensus 31 ~~v~~~~~~p~~~~~l~~~~~d--g~i~iw 58 (312)
..-...+|+|+|..++.++..+ |.-.||
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3567889999996666666666 666665
No 460
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=83.81 E-value=28 Score=30.21 Aligned_cols=111 Identities=12% Similarity=0.084 Sum_probs=64.6
Q ss_pred CccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEec---ccCCceeeEEEEecCCCCEEE
Q 021484 88 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSG---HRNSQTVKGVNFFGPNDEYVM 164 (312)
Q Consensus 88 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~v~~~s~~~~~l~ 164 (312)
...++.+.+.+++.+++.+..|.+..=+-... + .....+.. ......+..+.| .+++..++
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~--------------~-~~~~~f~~~~~~~~~~~l~~v~~-~~d~~~~a 343 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYVSKGTGL--------------T-EEDFDFEEADIKSRGFGILDVGY-RSKKEAWA 343 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEEecCCCC--------------c-ccccceeecccCCCCcceEEEEE-cCCCcEEE
Confidence 45688999999999888888777655332211 0 00001111 111123888988 66666555
Q ss_pred EeccCceEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEeCCCcEEEc
Q 021484 165 SGSDCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLW 217 (312)
Q Consensus 165 ~~~~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~t~~~d~~i~iw 217 (312)
+ +..|.+.... ..++.-...+ .-....+.+.|.++++.+++|. +|.|--|
T Consensus 344 ~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~il~~ 396 (398)
T PLN00033 344 A-GGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVLLRY 396 (398)
T ss_pred E-ECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEEEEe
Confidence 5 4567665543 4455433332 2235688999988877777764 6776544
No 461
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.59 E-value=38 Score=31.59 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=45.6
Q ss_pred eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEee--cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMV--GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
+..+.. ||+.++|+.=.+.|.|.+-+.+..+....+. .| .+...++|.-+. -++.+.+..+.+....+..
T Consensus 219 ~~ki~V-S~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~-~~p~qm~Wcgnd--aVvl~~e~~l~lvgp~gd~ 290 (829)
T KOG2280|consen 219 VVKISV-SPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDH-DPPKQMAWCGND--AVVLSWEVNLMLVGPPGDS 290 (829)
T ss_pred EEEEEE-cCCcceEEEEecCCcEEEEecchhhhhhccCCCCC-CchHhceeecCC--ceEEEEeeeEEEEcCCCCc
Confidence 566666 8899999999999999999888777766665 23 233467775544 2233334455555544443
No 462
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=83.22 E-value=28 Score=29.65 Aligned_cols=53 Identities=15% Similarity=0.305 Sum_probs=33.7
Q ss_pred EeccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe--CCCcEEEcc
Q 021484 165 SGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG--IEKTVKLWA 218 (312)
Q Consensus 165 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~--~d~~i~iwd 218 (312)
.+..+|++.-||..+... +.+...-.-.+.++.||++.+++.+- .-..-|.|=
T Consensus 194 ~g~~~GRl~~YD~~tK~~-~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi 248 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKVT-KVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWI 248 (376)
T ss_pred cCCCccceEEecCcccch-hhhhhcccccccccCCCCCCEEEEEeeccceeeeeEe
Confidence 444678888888776543 33332334457899999999977764 223445663
No 463
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.19 E-value=21 Score=31.73 Aligned_cols=89 Identities=10% Similarity=0.135 Sum_probs=51.9
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcc---ccccc--ccccCCCccEEEEEEccCC----
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVD---TFCPR--HLIGKNNIHITGLAYSNTS---- 100 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~i~~~~~~~~~---- 100 (312)
.-.|..+..++.| ..++-.+.+|.+.++=.+.......++.+.++- ++... .+.....-.+...+|+|+.
T Consensus 103 ~feV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 103 LFEVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred eEEEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence 3467888899999 678888888877665533222112222222221 11111 1111222345678899976
Q ss_pred CeEEEecCCcEEEEEcCCC
Q 021484 101 ELLISYNDELVYLFEKNMG 119 (312)
Q Consensus 101 ~~l~s~~d~~i~iwd~~~~ 119 (312)
.+++-.+|..+++||+...
T Consensus 182 hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred eEEEEecCcEEEEEecCCc
Confidence 3555578999999999764
No 464
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=82.93 E-value=13 Score=32.33 Aligned_cols=163 Identities=13% Similarity=0.074 Sum_probs=88.4
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCC----ccEE-EEEEccCCC-eE
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNN----IHIT-GLAYSNTSE-LL 103 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~-~~~~~~~~~-~l 103 (312)
...|..+-..|++ +.++.-+. ..+.++++.+..+... .+..... ..|+ .+..-..|. ++
T Consensus 220 ~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~r-------------kl~~dspg~~~~~Vte~l~lL~Gg~SLL 284 (733)
T COG4590 220 FSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIR-------------KLVDDSPGDSRHQVTEQLYLLSGGFSLL 284 (733)
T ss_pred ccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchh-------------hhhhcCCCchHHHHHHHHHHHhCceeEE
Confidence 4567788899999 56655444 6788888876543211 0001000 0111 111122333 55
Q ss_pred EEecCCcEEEE-EcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCee
Q 021484 104 ISYNDELVYLF-EKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKL 182 (312)
Q Consensus 104 ~s~~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~ 182 (312)
+...||.|.-| |.+....+ ....++.++-.... +..+.- ..+.+-+++-...|++..+..-..+.
T Consensus 285 v~~~dG~vsQWFdvr~~~~p-----------~l~h~R~f~l~pa~--~~~l~p-e~~rkgF~~l~~~G~L~~f~st~~~~ 350 (733)
T COG4590 285 VVHEDGLVSQWFDVRRDGQP-----------HLNHIRNFKLAPAE--VQFLLP-ETNRKGFYSLYRNGTLQSFYSTSEKL 350 (733)
T ss_pred EEcCCCceeeeeeeecCCCC-----------cceeeeccccCccc--ceeecc-ccccceEEEEcCCCceeeeecccCcc
Confidence 55678888766 66554211 11122222222222 333322 23344567777888888876543333
Q ss_pred EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 183 VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 183 ~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
+. +..--..+.-+++||.+.++++-. .|.|+++.+++..
T Consensus 351 lL-~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 351 LL-FERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred ee-hhhhhcCcceeeeCcccchheeec-CCceEEEEecCCC
Confidence 32 222223566789999999987754 6889999887754
No 465
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.88 E-value=5.2 Score=21.09 Aligned_cols=29 Identities=3% Similarity=-0.099 Sum_probs=19.0
Q ss_pred CccceEEEEEcCCCCeEEEEe-CC--CcEEEc
Q 021484 189 DRHVVNQLEPHPHIPMFATCG-IE--KTVKLW 217 (312)
Q Consensus 189 ~~~~v~~~~~~p~~~~l~t~~-~d--~~i~iw 217 (312)
....-....|+|+|+.|+-++ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567889999999866555 44 555555
No 466
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.73 E-value=12 Score=28.00 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=23.5
Q ss_pred ccEEEEEEccCCC------eEEEe-cCCcEEEEEcCC
Q 021484 89 IHITGLAYSNTSE------LLISY-NDELVYLFEKNM 118 (312)
Q Consensus 89 ~~i~~~~~~~~~~------~l~s~-~d~~i~iwd~~~ 118 (312)
..+..++|||.|- +|+.. .++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 3789999999662 66664 699999998654
No 467
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=81.99 E-value=4.5 Score=19.70 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYD 59 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd 59 (312)
.|.+++..+ .+++.+.+-+.+|+|.
T Consensus 3 ~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC---CEEEEEeCCCeEEecC
Confidence 477888766 5888888889999974
No 468
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=81.67 E-value=0.41 Score=41.33 Aligned_cols=101 Identities=11% Similarity=0.088 Sum_probs=65.5
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEe-cC
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISY-ND 108 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~-~d 108 (312)
++....++|..+++..++.+-..+.+.+||+.+..- ..+-.+-...-.-+.|++.+..++.+ ..
T Consensus 74 tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt---------------qqLE~gg~~s~sll~wsKg~~el~ig~~~ 138 (615)
T KOG2247|consen 74 TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT---------------QQLESGGTSSKSLLAWSKGTPELVIGNNA 138 (615)
T ss_pred chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH---------------HHHhccCcchHHHHhhccCCccccccccc
Confidence 445668899998877777888899999999985431 11111111222237888888877776 48
Q ss_pred CcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEE
Q 021484 109 ELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVM 164 (312)
Q Consensus 109 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~ 164 (312)
+.+.+++..+. +.....-.|... ++++++ .+.+..+.
T Consensus 139 gn~viynhgts----------------R~iiv~Gkh~RR--gtq~av-~lEd~vil 175 (615)
T KOG2247|consen 139 GNIVIYNHGTS----------------RRIIVMGKHQRR--GTQIAV-TLEDYVIL 175 (615)
T ss_pred cceEEEeccch----------------hhhhhhcccccc--eeEEEe-cccceeee
Confidence 99999998765 232222225544 888888 66655443
No 469
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=81.37 E-value=4.9 Score=20.13 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=20.2
Q ss_pred CEEEEeccCceEEEEeccCCeeEEE
Q 021484 161 EYVMSGSDCGHLFIWKKKGGKLVRL 185 (312)
Q Consensus 161 ~~l~~~~~dg~v~iwd~~~~~~~~~ 185 (312)
..++.++.+|.+..+|..+|+.+-.
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 3577888899999999998887643
No 470
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=78.31 E-value=9.3 Score=31.27 Aligned_cols=61 Identities=10% Similarity=0.120 Sum_probs=45.6
Q ss_pred CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe------CCCcEEEccCCCCCCCCCCC
Q 021484 169 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG------IEKTVKLWAPMPTDFPPLPD 229 (312)
Q Consensus 169 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~------~d~~i~iwd~~~~~~~~~~~ 229 (312)
...|++||..+.+....-.+-.+.|+++.|..+.+.++.|. ....+..||+.++....+..
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence 55799999987776655555668899999987767777765 34578889999887655554
No 471
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=77.24 E-value=50 Score=28.92 Aligned_cols=60 Identities=12% Similarity=0.071 Sum_probs=36.8
Q ss_pred EEEEeccCceEEEEeccCCeeEEEeecCccce--EEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 162 YVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVV--NQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 162 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~v--~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
.++.++.++++.||.=. +.+-.-+....+| .-..|......+++-+.+|.+.+-=+.+..
T Consensus 302 ~llV~t~t~~LlVy~d~--~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 302 NLLVGTHTGTLLVYEDT--TLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred EEEEEecCCeEEEEeCC--eEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence 58889999999998633 3322222222232 222333344568888899999997766653
No 472
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=76.12 E-value=9.5 Score=20.09 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=22.4
Q ss_pred EEEEeccCceEEEEeccCCeeEEEeec
Q 021484 162 YVMSGSDCGHLFIWKKKGGKLVRLMVG 188 (312)
Q Consensus 162 ~l~~~~~dg~v~iwd~~~~~~~~~~~~ 188 (312)
.++.++.+|.|+-.|.++|+.+-.++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 356669999999999999998877753
No 473
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=76.10 E-value=33 Score=28.39 Aligned_cols=71 Identities=14% Similarity=0.196 Sum_probs=50.6
Q ss_pred eeEEEEecCCCCEEEEeccCceEEEEecc------CC-eeEEEeec-----CccceEEEEEcCCCC------------eE
Q 021484 150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKK------GG-KLVRLMVG-----DRHVVNQLEPHPHIP------------MF 205 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~p~~~------------~l 205 (312)
-+.+++ +|.+.+.++....+...+||.. .. ..+..+.. .....+.+.|+.... .+
T Consensus 25 ~WGia~-~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSY-RPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEe-cCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 678998 8999999999999999999986 12 22333332 123567777764332 26
Q ss_pred EEEeCCCcEEEccCCC
Q 021484 206 ATCGIEKTVKLWAPMP 221 (312)
Q Consensus 206 ~t~~~d~~i~iwd~~~ 221 (312)
+.+++||+|.-|...-
T Consensus 104 if~tEdGTisaW~p~v 119 (336)
T TIGR03118 104 LFVTEDGTLSGWAPAL 119 (336)
T ss_pred EEEeCCceEEeecCcC
Confidence 7889999999999643
No 474
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=75.47 E-value=19 Score=31.39 Aligned_cols=163 Identities=10% Similarity=0.060 Sum_probs=83.4
Q ss_pred ccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceee-EEEEecCCCCEEEEec
Q 021484 89 IHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVK-GVNFFGPNDEYVMSGS 167 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~~s~~~~~l~~~~ 167 (312)
..+..+-..|+|+.+..-+..++.++++.+.. ++.. +....-.+.. ...|+ .+.. -..|.-+++++
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~------l~~r-----kl~~dspg~~-~~~Vte~l~l-L~Gg~SLLv~~ 287 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTGSELVVALLDKRS------LQIR-----KLVDDSPGDS-RHQVTEQLYL-LSGGFSLLVVH 287 (733)
T ss_pred cchHhhEECCCCCEEEEecCCeEEEEeecccc------cchh-----hhhhcCCCch-HHHHHHHHHH-HhCceeEEEEc
Confidence 44666778899997766555788888886641 0000 1111111100 00122 1111 23456688889
Q ss_pred cCceEEEE-ecc-CCee----EEEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccC
Q 021484 168 DCGHLFIW-KKK-GGKL----VRLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQG 241 (312)
Q Consensus 168 ~dg~v~iw-d~~-~~~~----~~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 241 (312)
.||-|.-| |.+ ++++ ++.++-....+..+.-..+.+.+++-+..|++.++.....+..-+. ..-........+
T Consensus 288 ~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-~~~~~~~~~~~S 366 (733)
T COG4590 288 EDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-RAYQAPQLVAMS 366 (733)
T ss_pred CCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-hhhcCcceeeeC
Confidence 99998877 443 2322 2222222233433332233445888888899888775544432111 111122333455
Q ss_pred CCCceeEEecCCceEEEEEecccCc
Q 021484 242 REDHSRITLTPDVIMHVLRLQRRQT 266 (312)
Q Consensus 242 ~~~~~l~s~~~d~~i~i~~~~~~~~ 266 (312)
+...++++- ..+.++++.+.+++.
T Consensus 367 p~~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 367 PNQAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred cccchheee-cCCceEEEEecCCCC
Confidence 555555543 356788888776643
No 475
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.22 E-value=57 Score=32.60 Aligned_cols=136 Identities=13% Similarity=0.150 Sum_probs=69.2
Q ss_pred ecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCC-------CCEEEEeccCceEEEEecc
Q 021484 106 YNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPN-------DEYVMSGSDCGHLFIWKKK 178 (312)
Q Consensus 106 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~-------~~~l~~~~~dg~v~iwd~~ 178 (312)
..|+.+.+|+.+++ .....+.+.... |..|...-|. =++++.-+.--.|.++-+.
T Consensus 96 TiDn~L~lWny~~~----------------~e~~~~d~~sht--Il~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~ 157 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESD----------------NELAEYDGLSHT--ILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVS 157 (1311)
T ss_pred EeCCeEEEEEcCCC----------------Cccccccchhhh--heeeeeecCCCCcchhhhheeEEecccceEEEEEEE
Confidence 45999999999885 333444443332 4444432222 2233333333445554322
Q ss_pred ----CCee---E--EEeecCccceEEEEEcCCCCeEEEEeCCCcEEEccCC----CC----CC-----------------
Q 021484 179 ----GGKL---V--RLMVGDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM----PT----DF----------------- 224 (312)
Q Consensus 179 ----~~~~---~--~~~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~----~~----~~----------------- 224 (312)
++.. . ..+....-.|+++....+|+.|++|- || .+|.+. .+ +.
T Consensus 158 ~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~ 234 (1311)
T KOG1900|consen 158 FDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL 234 (1311)
T ss_pred eccccCcccccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence 1111 0 12222345788898888898888775 55 444421 11 00
Q ss_pred CCCC-CChhhhhhhhccCCCCceeEEecCCceEEEEEecc
Q 021484 225 PPLP-DNAEKIMKANKQGREDHSRITLTPDVIMHVLRLQR 263 (312)
Q Consensus 225 ~~~~-~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~~~~~ 263 (312)
..++ .+..++ .-.........+.+-+..+.+++|++..
T Consensus 235 ~~~~~~~~dpI-~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 235 LSVPGSSKDPI-RQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hcCCCCCCCcc-eeeEeccccceeeeeccCceEEEEEccC
Confidence 0111 111122 1111233345677888889999999876
No 476
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=74.89 E-value=95 Score=31.01 Aligned_cols=156 Identities=12% Similarity=0.130 Sum_probs=85.3
Q ss_pred cEEEEEe---------CCCeEEEEEccCCeecCCCCCCCCcccccccccc-cCCCccEEEEEEccCCCeEEEecCCcEEE
Q 021484 44 NYFAVGG---------SDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLI-GKNNIHITGLAYSNTSELLISYNDELVYL 113 (312)
Q Consensus 44 ~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~s~~d~~i~i 113 (312)
.+|++|. ..|.+.|||+-.-- .+.+.|...+..+.+. ...+++|..++= -+| +|+++...+|.+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVV----PepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~~GqKI~v 1120 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVV----PEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSSQGQKIIV 1120 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEec----CCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEccCcEEEE
Confidence 3677764 24889999975311 1112233333333222 233556665542 233 677777889999
Q ss_pred EEcCCCcCCCCCcCCcccccCCCCC-ceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCC-eeEEEeec--C
Q 021484 114 FEKNMGLGPSPLSLSPEDLQKREEP-QVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGG-KLVRLMVG--D 189 (312)
Q Consensus 114 wd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~--~ 189 (312)
|++.... ..+ ..|-.. +.++.++ ..-.++|+.|.--..|.+.-+... ..+..+.. .
T Consensus 1121 ~~l~r~~---------------~ligVaFiD~--~~yv~s~---~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~ 1180 (1366)
T KOG1896|consen 1121 RKLDRDS---------------ELIGVAFIDL--PLYVHSM---KVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFE 1180 (1366)
T ss_pred EEeccCC---------------cceeeEEecc--ceeEEeh---hhhhhheehhhhhhceEEEEEccCceEEEEeecCCc
Confidence 9994431 121 112111 1223333 234677888877777777665432 22222221 1
Q ss_pred ccceEEEEEcCCCCe--EEEEeCCCcEEEccCCCCCCC
Q 021484 190 RHVVNQLEPHPHIPM--FATCGIEKTVKLWAPMPTDFP 225 (312)
Q Consensus 190 ~~~v~~~~~~p~~~~--l~t~~~d~~i~iwd~~~~~~~ 225 (312)
.-.++++.|--+|.. ++.+..|+.|++|-.....+.
T Consensus 1181 ~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~e 1218 (1366)
T KOG1896|consen 1181 PLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPENIE 1218 (1366)
T ss_pred hhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCcc
Confidence 235778888777754 888889999999876554443
No 477
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=74.46 E-value=47 Score=27.34 Aligned_cols=165 Identities=8% Similarity=-0.011 Sum_probs=0.0
Q ss_pred EEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCccc
Q 021484 113 LFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHV 192 (312)
Q Consensus 113 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 192 (312)
+|+.... .....+..-..+.-+..+.+ .+++...+..+.-++|.|+.+...-..+..-.-.
T Consensus 68 itn~~~~----------------t~~~l~~~i~~~~l~~Dv~v---se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~ 128 (370)
T COG5276 68 ITNVSLQ----------------THDVLLSVINARDLFADVRV---SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD 128 (370)
T ss_pred ccCcccc----------------cCcceEEEEehhhhhheeEe---cccEEEEEcCCCceEEEeccCCCCcceeccccCC
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEccCCCCCCCCCCCChhhhhhhhccCC-CCceeEEecCCceEEEEEecccCccceeE
Q 021484 193 VNQLEPHPHIPMFATCGIEKTVKLWAPMPTDFPPLPDNAEKIMKANKQGR-EDHSRITLTPDVIMHVLRLQRRQTLAYRE 271 (312)
Q Consensus 193 v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~i~~~~~~~~~~~~~ 271 (312)
=..-.|.-.|++...+..|.-+-+.|+.....-.+.+.-...-...+--. .+++......|+-+.+.|+.....+.+..
T Consensus 129 gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~ 208 (370)
T COG5276 129 GYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIG 208 (370)
T ss_pred ceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEE
Q ss_pred eecCC-CccCCCCCCCeEEEeecCCC
Q 021484 272 RRYNA-ADFESDEEEGETYLLGFSDS 296 (312)
Q Consensus 272 ~~~~~-~~~~~~~~~~~v~~~~~~~~ 296 (312)
+...+ ..-..--.+.+.|+++...+
T Consensus 209 ~~n~g~g~~sv~vsdnr~y~vvy~eg 234 (370)
T COG5276 209 SYNTGPGTYSVSVSDNRAYLVVYDEG 234 (370)
T ss_pred EEecCCceEEEEecCCeeEEEEcccc
No 478
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=73.37 E-value=23 Score=23.21 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=29.1
Q ss_pred eccCceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe
Q 021484 166 GSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG 209 (312)
Q Consensus 166 ~~~dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~ 209 (312)
+..+|.+.-||..+++....+.+ -.-.+.|+.+|++..++.+-
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEe
Confidence 44578999999998876444443 23568999999999866653
No 479
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=73.16 E-value=67 Score=28.49 Aligned_cols=31 Identities=10% Similarity=0.131 Sum_probs=25.5
Q ss_pred ccEEEEEEccCCCeEEEec-CCcEEEEEcCCC
Q 021484 89 IHITGLAYSNTSELLISYN-DELVYLFEKNMG 119 (312)
Q Consensus 89 ~~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~ 119 (312)
...+.|+|.|+|++|++-. .|.|++++..+.
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 4567999999999999986 699999986543
No 480
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=72.50 E-value=24 Score=33.67 Aligned_cols=82 Identities=15% Similarity=-0.004 Sum_probs=53.2
Q ss_pred ccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCC----CCCCCcccccccccccCCCccEEEEEEccCCCeEEE
Q 021484 30 SIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPI----SSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLIS 105 (312)
Q Consensus 30 ~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s 105 (312)
...|.++.....+ ..++....||+|.++|..+.+.+... .....+.......+...+...+.-++|||.+..++.
T Consensus 259 ~~~V~si~~~~~~-~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 259 NKRVVSITSPELD-IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred CCeEEEEEecccC-cEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 4568888887776 68999999999999999988766544 212112222111111122235667899999987777
Q ss_pred e-cCCcEE
Q 021484 106 Y-NDELVY 112 (312)
Q Consensus 106 ~-~d~~i~ 112 (312)
- .++.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 4 577755
No 481
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=72.24 E-value=73 Score=28.52 Aligned_cols=131 Identities=13% Similarity=0.185 Sum_probs=67.7
Q ss_pred CCCeEEE-e-cCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCC-------CEEEEeccC
Q 021484 99 TSELLIS-Y-NDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPND-------EYVMSGSDC 169 (312)
Q Consensus 99 ~~~~l~s-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~-------~~l~~~~~d 169 (312)
+..+|.. + ....++-.|++.+ +.+.....+.. + -+.| .|.. ..-+.|-.+
T Consensus 478 dssli~~dg~~~~kLykmDIErG----------------kvveeW~~~dd---v-vVqy-~p~~kf~qmt~eqtlvGlS~ 536 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERG----------------KVVEEWDLKDD---V-VVQY-NPYFKFQQMTDEQTLVGLSD 536 (776)
T ss_pred CcceEEecCCCcccceeeecccc----------------eeeeEeecCCc---c-eeec-CCchhHHhcCccceEEeecc
Confidence 4445554 4 3667777788777 66666665553 2 3445 5532 123345556
Q ss_pred ceEEEEeccC-CeeEEEeecCccceEEEEEc----CCCCeEEEEeCCCcEEEccCCCCCCC-CCCCChhhhhhhhccCCC
Q 021484 170 GHLFIWKKKG-GKLVRLMVGDRHVVNQLEPH----PHIPMFATCGIEKTVKLWAPMPTDFP-PLPDNAEKIMKANKQGRE 243 (312)
Q Consensus 170 g~v~iwd~~~-~~~~~~~~~~~~~v~~~~~~----p~~~~l~t~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~ 243 (312)
..|.-.|.+- |..+.... ...-++.-.|+ -...++|.+|.-|-||+||--+.... .+++-...+ .-.....+
T Consensus 537 ~svFrIDPR~~gNKi~v~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aI-k~idvta~ 614 (776)
T COG5167 537 YSVFRIDPRARGNKIKVVE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAI-KHIDVTAN 614 (776)
T ss_pred cceEEecccccCCceeeee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccce-eeeEeecC
Confidence 6666666542 32222211 11222222233 24568999999999999995544432 233333333 22223444
Q ss_pred CceeEEecC
Q 021484 244 DHSRITLTP 252 (312)
Q Consensus 244 ~~~l~s~~~ 252 (312)
+.++++.+.
T Consensus 615 Gk~ilaTCk 623 (776)
T COG5167 615 GKHILATCK 623 (776)
T ss_pred CcEEEEeec
Confidence 555554443
No 482
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=71.98 E-value=33 Score=24.46 Aligned_cols=68 Identities=9% Similarity=0.127 Sum_probs=44.4
Q ss_pred EEEecCCCCEEEEeccCceEEEEeccCC--------eeEEEeecCccceEEEEEc---CCC--CeEEEEeCCCcEEEccC
Q 021484 153 VNFFGPNDEYVMSGSDCGHLFIWKKKGG--------KLVRLMVGDRHVVNQLEPH---PHI--PMFATCGIEKTVKLWAP 219 (312)
Q Consensus 153 v~~~s~~~~~l~~~~~dg~v~iwd~~~~--------~~~~~~~~~~~~v~~~~~~---p~~--~~l~t~~~d~~i~iwd~ 219 (312)
-.| +.....|++++..|+|.|++.... ..+..+. -...|++++-. |+. ..|+.| ....|..||.
T Consensus 4 Gkf-DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliG-t~t~llaYDV 80 (136)
T PF14781_consen 4 GKF-DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDV 80 (136)
T ss_pred EEe-CCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEc
Confidence 345 666778999999999999986532 2334443 34567776543 333 235554 4789999998
Q ss_pred CCCC
Q 021484 220 MPTD 223 (312)
Q Consensus 220 ~~~~ 223 (312)
....
T Consensus 81 ~~N~ 84 (136)
T PF14781_consen 81 ENNS 84 (136)
T ss_pred ccCc
Confidence 8765
No 483
>PLN02153 epithiospecifier protein
Probab=70.42 E-value=65 Score=27.19 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=15.9
Q ss_pred cEEEEEeCC-----CeEEEEEccCCeec
Q 021484 44 NYFAVGGSD-----EYARVYDIRKCHWY 66 (312)
Q Consensus 44 ~~l~~~~~d-----g~i~iwd~~~~~~~ 66 (312)
.+++.|+.+ ..+.+||+.+.++.
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 114 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWT 114 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEE
Confidence 677777753 35778898877653
No 484
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=69.83 E-value=33 Score=27.61 Aligned_cols=74 Identities=9% Similarity=0.109 Sum_probs=0.0
Q ss_pred CCccceEEEEE------cCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEc-cCC
Q 021484 28 MNSIRLNAIVI------DPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYS-NTS 100 (312)
Q Consensus 28 ~h~~~v~~~~~------~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 100 (312)
.+...|+||+- .++....|+.|+++|.|.|.|....... ....+......-...-.|. -+.
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il------------~~~~lpsvPv~i~~~G~~devdy 241 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTIL------------KQVQLPSVPVFISVSGQYDEVDY 241 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeE------------EEEecCCCceEEEEEeeeeccce
Q ss_pred CeEEEecCCcEEE
Q 021484 101 ELLISYNDELVYL 113 (312)
Q Consensus 101 ~~l~s~~d~~i~i 113 (312)
++++++.||.|++
T Consensus 242 RI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 242 RIVVACRDGKIYT 254 (257)
T ss_pred EEEEEeCCCEEEE
No 485
>PLN02193 nitrile-specifier protein
Probab=69.66 E-value=83 Score=28.10 Aligned_cols=64 Identities=5% Similarity=-0.105 Sum_probs=34.6
Q ss_pred CCCEEEEeccC----ceEEEEeccCCeeEEEeec---Cc--cceEEEEEcCCCCeEEEEeCC--------------CcEE
Q 021484 159 NDEYVMSGSDC----GHLFIWKKKGGKLVRLMVG---DR--HVVNQLEPHPHIPMFATCGIE--------------KTVK 215 (312)
Q Consensus 159 ~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~---~~--~~v~~~~~~p~~~~l~t~~~d--------------~~i~ 215 (312)
+++.++.++.+ ..+.+||+.+.+....-.. .. .....+. -++++++.|+.. ..+.
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~ 405 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTF 405 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceeccEE
Confidence 46666666654 4688999887765332110 11 1111222 255667777643 1366
Q ss_pred EccCCCCCC
Q 021484 216 LWAPMPTDF 224 (312)
Q Consensus 216 iwd~~~~~~ 224 (312)
+||+.+...
T Consensus 406 ~~D~~t~~W 414 (470)
T PLN02193 406 ALDTETLQW 414 (470)
T ss_pred EEEcCcCEE
Confidence 777776654
No 486
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.25 E-value=42 Score=33.12 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=28.7
Q ss_pred CccceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCe
Q 021484 29 NSIRLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCH 64 (312)
Q Consensus 29 h~~~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~ 64 (312)
-+.....++|+|.- .++|.++..|.|++|-...-+
T Consensus 34 ~~~~~~~~afD~~q-~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQ-GLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCCCcceeecccc-ceEEEEEecccEEEecccceE
Confidence 34566789999987 799999999999999876444
No 487
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=68.01 E-value=31 Score=22.47 Aligned_cols=50 Identities=8% Similarity=0.228 Sum_probs=30.9
Q ss_pred CceEEEEeccCCeeEEEeecCccceEEEEEcCCCCeEEEEe-CCCcEEEccCCC
Q 021484 169 CGHLFIWKKKGGKLVRLMVGDRHVVNQLEPHPHIPMFATCG-IEKTVKLWAPMP 221 (312)
Q Consensus 169 dg~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~l~t~~-~d~~i~iwd~~~ 221 (312)
-+.|..||.... +.....-...+.+.++|++++|..++ ..+.|++|..+.
T Consensus 35 ~~~Vvyyd~~~~---~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 35 WGNVVYYDGKEV---KVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CceEEEEeCCEe---EEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 345555664322 22222223457899999999865554 778999997653
No 488
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=67.07 E-value=70 Score=26.28 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=36.8
Q ss_pred CCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCCCeEEEec---CC----cEEEEEcCCC
Q 021484 52 DEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTSELLISYN---DE----LVYLFEKNMG 119 (312)
Q Consensus 52 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~s~~---d~----~i~iwd~~~~ 119 (312)
-..|.+||..+.++.... .+-.+.|+.+.|..+.++++++. ++ .+..||..+.
T Consensus 15 C~~lC~yd~~~~qW~~~g---------------~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPG---------------NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CCEEEEEECCCCEeecCC---------------CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 356999999988754221 22367899999997777777753 33 4778888764
No 489
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=67.03 E-value=73 Score=27.26 Aligned_cols=104 Identities=12% Similarity=0.098 Sum_probs=0.0
Q ss_pred CCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEeccc--CCceeeEEEEecCCCCEEEEeccCceEEEEe
Q 021484 99 TSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHR--NSQTVKGVNFFGPNDEYVMSGSDCGHLFIWK 176 (312)
Q Consensus 99 ~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~~s~~~~~l~~~~~dg~v~iwd 176 (312)
+++.++...+|.|.-+|..++ ..+....... .. +..-.+ -.+|+ ++.++.+|.++.+|
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g----------------~~~W~~~~~~~~~~--~~~~~~-~~~G~-i~~g~~~g~~y~ld 127 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTG----------------LVKWSYPLLGAVAQ--LSGPIL-GSDGK-IYVGSWDGKLYALD 127 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCC----------------cEEecccCcCccee--ccCceE-EeCCe-EEEecccceEEEEE
Q ss_pred ccCCeeEEEeecCc-cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 177 KKGGKLVRLMVGDR-HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 177 ~~~~~~~~~~~~~~-~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
.++|+.+-...... ..+.....-.++..++.. .++.+.-.+..++.
T Consensus 128 ~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~ 174 (370)
T COG1520 128 ASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGT-DDGHLYALNADTGT 174 (370)
T ss_pred CCCCcEEEEEecCCCeEEecCcEEcCcEEEEec-CCCeEEEEEccCCc
No 490
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=66.17 E-value=13 Score=19.74 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=16.1
Q ss_pred CCCEEEEeccCceEEEEeccC
Q 021484 159 NDEYVMSGSDCGHLFIWKKKG 179 (312)
Q Consensus 159 ~~~~l~~~~~dg~v~iwd~~~ 179 (312)
.+..++.++.||.|+.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 466888999999999999764
No 491
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=66.14 E-value=14 Score=17.90 Aligned_cols=25 Identities=12% Similarity=0.416 Sum_probs=17.5
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEE
Q 021484 33 LNAIVIDPRNPNYFAVGGSDEYARVY 58 (312)
Q Consensus 33 v~~~~~~p~~~~~l~~~~~dg~i~iw 58 (312)
...++.+++| +++++=+....|++|
T Consensus 4 P~gvav~~~g-~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDG-NIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTS-EEEEEECCCTEEEEE
T ss_pred CcEEEEeCCC-CEEEEECCCCEEEEC
Confidence 4577777777 677776777777664
No 492
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=65.39 E-value=64 Score=30.68 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=44.7
Q ss_pred ceeeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeec---CccceEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484 148 QTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVG---DRHVVNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 148 ~~v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
.++.+.+| . +-++.++.+|.|.++...+......+.. |...|+++...-++-+++.++.| .+++++..
T Consensus 627 lPvrsla~-~---ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~-~~rlfhte 697 (925)
T KOG3522|consen 627 LPVRSLAF-Q---EDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD-EERLFHTE 697 (925)
T ss_pred ccccchhh-h---hceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC-EEEEeccc
Confidence 34778776 2 2345677899999999877655554443 45678999888887776666543 44444433
No 493
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=62.61 E-value=1.1e+02 Score=26.86 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEccCCC
Q 021484 192 VVNQLEPHPHIPMFATCGIEKTVKLWAPMP 221 (312)
Q Consensus 192 ~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~ 221 (312)
.|..++..+..+.+++...++.|.+|++..
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 388899999889999999999999999975
No 494
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=62.42 E-value=95 Score=26.19 Aligned_cols=66 Identities=9% Similarity=0.150 Sum_probs=43.9
Q ss_pred eeEEEEec------CCCCEEEEeccCceEEEEeccCCeeEEE----eecCccceEEEEEcCCCCeEEEEeCCCcEE
Q 021484 150 VKGVNFFG------PNDEYVMSGSDCGHLFIWKKKGGKLVRL----MVGDRHVVNQLEPHPHIPMFATCGIEKTVK 215 (312)
Q Consensus 150 v~~v~~~s------~~~~~l~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~v~~~~~~p~~~~l~t~~~d~~i~ 215 (312)
+..+.|.. -.+.++++.-..+.|....+..+..+.. +.....++.++++.|+|.+.++...+|.|.
T Consensus 255 p~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 255 PTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 66777631 1456777777778888888875543322 223444899999999999988888888774
No 495
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=61.74 E-value=93 Score=25.85 Aligned_cols=71 Identities=20% Similarity=0.388 Sum_probs=43.8
Q ss_pred cEEEEEEccCCCeEEEec-CCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCc-e--eeEEEEecCCCCEEEE
Q 021484 90 HITGLAYSNTSELLISYN-DELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQ-T--VKGVNFFGPNDEYVMS 165 (312)
Q Consensus 90 ~i~~~~~~~~~~~l~s~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--v~~v~~~s~~~~~l~~ 165 (312)
.+.++...++|.+|+|+. -..|.+.+..++ +.+..+.+..... . -...+| -.+-+++-.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG----------------~I~W~lgG~~~~df~~~~~~f~~-QHdar~~~~ 207 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTG----------------KIIWRLGGKRNSDFTLPATNFSW-QHDARFLNE 207 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCC----------------cEEEEeCCCCCCcccccCCcEee-ccCCEEecc
Confidence 477888889999999985 788999998877 4555554441110 0 111233 233444444
Q ss_pred eccCceEEEEec
Q 021484 166 GSDCGHLFIWKK 177 (312)
Q Consensus 166 ~~~dg~v~iwd~ 177 (312)
+..++.|.++|-
T Consensus 208 ~~~~~~IslFDN 219 (299)
T PF14269_consen 208 SNDDGTISLFDN 219 (299)
T ss_pred CCCCCEEEEEcC
Confidence 566777777775
No 496
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=61.02 E-value=14 Score=34.27 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=28.3
Q ss_pred cceEEEEEcCCCCeEEEEeCCCcEEEccCCCCC
Q 021484 191 HVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTD 223 (312)
Q Consensus 191 ~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~ 223 (312)
..++++.-+|.+..++.++.||.|++|+.....
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 456788889999999999999999999976554
No 497
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=59.85 E-value=1.3e+02 Score=26.82 Aligned_cols=60 Identities=13% Similarity=0.032 Sum_probs=36.6
Q ss_pred ceEEEEEcCCCCcEEEEEeCCCeEEEEEccCCeecCCCCCCCCcccccccccccCCCccEEEEEEccCC
Q 021484 32 RLNAIVIDPRNPNYFAVGGSDEYARVYDIRKCHWYSPISSDTPVDTFCPRHLIGKNNIHITGLAYSNTS 100 (312)
Q Consensus 32 ~v~~~~~~p~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 100 (312)
....|+|.|++ ++|++--..|.|++++..++... .+..+. .............|+++|+-
T Consensus 31 ~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~~-------~~~~l~-~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDN-QLWVTERATGKILRVNPETGEVK-------VVFTLP-EIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCC-eEEEEEecCCEEEEEeCCCCcee-------eeecCC-ceeccCCCCceeeEEECCCc
Confidence 46789999998 67766554699999986554311 111110 01101125678899999874
No 498
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=58.50 E-value=1e+02 Score=25.27 Aligned_cols=117 Identities=8% Similarity=0.031 Sum_probs=73.1
Q ss_pred CccEEEEEEccCCCeEEEecCCcEEEEEcCCCcCCCCCcCCcccccCCCCCceEecccCCceeeEEEEecCCCCEEEEec
Q 021484 88 NIHITGLAYSNTSELLISYNDELVYLFEKNMGLGPSPLSLSPEDLQKREEPQVYSGHRNSQTVKGVNFFGPNDEYVMSGS 167 (312)
Q Consensus 88 ~~~i~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~s~~~~~l~~~~ 167 (312)
........|.+.|++-+++..|.---.|... ..+++|..... .....++- .|+|...++.-
T Consensus 147 ~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-----------------~~i~vfpaPqG-~gpyGi~a-tpdGsvwyasl 207 (353)
T COG4257 147 DANLETAVFDPWGNLWFTGQIGAYGRLDPAR-----------------NVISVFPAPQG-GGPYGICA-TPDGSVWYASL 207 (353)
T ss_pred CCcccceeeCCCccEEEeeccccceecCccc-----------------CceeeeccCCC-CCCcceEE-CCCCcEEEEec
Confidence 4556778899999877776533322222222 23444443322 22566776 89999888877
Q ss_pred cCceEEEEeccCCeeEEEee---cCccceEEEEEcCCCCeEEEEeCCCcEEEccCCCCCC
Q 021484 168 DCGHLFIWKKKGGKLVRLMV---GDRHVVNQLEPHPHIPMFATCGIEKTVKLWAPMPTDF 224 (312)
Q Consensus 168 ~dg~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~l~t~~~d~~i~iwd~~~~~~ 224 (312)
.+.-|...|..++... .+. .....-..+--+|.++.-+|....+.+..+|......
T Consensus 208 agnaiaridp~~~~ae-v~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW 266 (353)
T COG4257 208 AGNAIARIDPFAGHAE-VVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSW 266 (353)
T ss_pred cccceEEcccccCCcc-eecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccc
Confidence 7777888887766322 222 1122334455578888888888888999999877654
No 499
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=55.27 E-value=1.3e+02 Score=25.43 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=15.9
Q ss_pred cEEEEEeCC-----------CeEEEEEccCCeec
Q 021484 44 NYFAVGGSD-----------EYARVYDIRKCHWY 66 (312)
Q Consensus 44 ~~l~~~~~d-----------g~i~iwd~~~~~~~ 66 (312)
.+++.|+.+ ..+..||..+.++.
T Consensus 65 ~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 65 KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred EEEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Confidence 677887753 24777888877654
No 500
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=55.09 E-value=1.2e+02 Score=25.15 Aligned_cols=70 Identities=13% Similarity=0.296 Sum_probs=49.4
Q ss_pred eeEEEEecCCCCEEEEeccCceEEEEeccCCeeEEEeecCcc-c----eEEEEEcCCCCeEEEEeCCCcEEEccCC
Q 021484 150 VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-V----VNQLEPHPHIPMFATCGIEKTVKLWAPM 220 (312)
Q Consensus 150 v~~v~~~s~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~----v~~~~~~p~~~~l~t~~~d~~i~iwd~~ 220 (312)
+.+|.. ..+|.+|++.-.-..|.+.|.++|+.+-.+.+... . -...+|--+-+++-.+..+++|.|+|-.
T Consensus 146 iNsV~~-~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 146 INSVDK-DDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeee-cCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 778887 78899999999999999999999998888765421 1 0112232233334344678899999973
Done!