BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021485
         (312 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZDT|A Chain A, Crystal Structure Of Basic Patch Mutant Fak Ferm Domain
           Fak31-405 K216a, K218a, R221a, K222a
 pdb|3ZDT|B Chain B, Crystal Structure Of Basic Patch Mutant Fak Ferm Domain
           Fak31-405 K216a, K218a, R221a, K222a
          Length = 377

 Score = 28.5 bits (62), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 237 IVPIVLSGTHRAWRKGSLHIR----PVPITVKYLPPISTSDWTADKLDDYIKMVHDMYVK 292
           +  I  S +    RKG L ++    P P+TV   P ++ ++  AD +D Y ++V+     
Sbjct: 271 VQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVT-APSLTIAENMADLIDGYCRLVNGATQS 329

Query: 293 NLPEPQK 299
            +  PQK
Sbjct: 330 FIIRPQK 336


>pdb|2AEH|A Chain A, Focal Adhesion Kinase 1
 pdb|2AEH|B Chain B, Focal Adhesion Kinase 1
          Length = 369

 Score = 28.5 bits (62), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 237 IVPIVLSGTHRAWRKGSLHIR----PVPITVKYLPPISTSDWTADKLDDYIKMVHDMYVK 292
           +  I  S +    RKG L ++    P P+TV   P ++ ++  AD +D Y ++V+     
Sbjct: 269 VQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVT-APSLTIAENMADLIDGYCRLVNGATQS 327

Query: 293 NLPEPQK 299
            +  PQK
Sbjct: 328 FIIRPQK 334


>pdb|2J0M|A Chain A, Crystal Structure A Two-Chain Complex Between The Ferm And
           Kinase Domains Of Focal Adhesion Kinase
          Length = 371

 Score = 28.5 bits (62), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 237 IVPIVLSGTHRAWRKGSLHIR----PVPITVKYLPPISTSDWTADKLDDYIKMVHDMYVK 292
           +  I  S +    RKG L ++    P P+TV   P ++ ++  AD +D Y ++V+     
Sbjct: 271 VQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVT-APSLTIAENMADLIDGYCRLVNGATQS 329

Query: 293 NLPEPQK 299
            +  PQK
Sbjct: 330 FIIRPQK 336


>pdb|2AL6|A Chain A, Ferm Domain Of Focal Adhesion Kinase
 pdb|2AL6|B Chain B, Ferm Domain Of Focal Adhesion Kinase
          Length = 375

 Score = 28.5 bits (62), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 237 IVPIVLSGTHRAWRKGSLHIR----PVPITVKYLPPISTSDWTADKLDDYIKMVHDMYVK 292
           +  I  S +    RKG L ++    P P+TV   P ++ ++  AD +D Y ++V+     
Sbjct: 269 VQTIQYSNSEDKDRKGMLQLKIAGAPEPLTVT-APSLTIAENMADLIDGYCRLVNGATQS 327

Query: 293 NLPEPQK 299
            +  PQK
Sbjct: 328 FIIRPQK 334


>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
           Containing The Ferm And Kinase Domains.
 pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
           Containing The Ferm And Kinase Domains
          Length = 656

 Score = 28.5 bits (62), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 240 IVLSGTHRAWRKGSLHIR----PVPITVKYLPPISTSDWTADKLDDYIKMVHDMYVKNLP 295
           I  S +    RKG L ++    P P+TV   P ++ ++  AD +D Y ++V+      + 
Sbjct: 272 IQYSNSEDKDRKGMLQLKIAGAPEPLTVT-APSLTIAENMADLIDGYCRLVNGATQSFII 330

Query: 296 EPQK 299
            PQK
Sbjct: 331 RPQK 334


>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
           Containing The Ferm And Kinase Domains
          Length = 656

 Score = 28.5 bits (62), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 240 IVLSGTHRAWRKGSLHIR----PVPITVKYLPPISTSDWTADKLDDYIKMVHDMYVKNLP 295
           I  S +    RKG L ++    P P+TV   P ++ ++  AD +D Y ++V+      + 
Sbjct: 272 IQYSNSEDKDRKGMLQLKIAGAPEPLTVT-APSLTIAENMADLIDGYCRLVNGATQSFII 330

Query: 296 EPQK 299
            PQK
Sbjct: 331 RPQK 334


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,396,892
Number of Sequences: 62578
Number of extensions: 379411
Number of successful extensions: 581
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 6
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)