RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021485
(312 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 6e-04
Identities = 44/304 (14%), Positives = 82/304 (26%), Gaps = 105/304 (34%)
Query: 16 ESFLDTSCE--QPNVKEPPRVSVKQEAGFRPKA---ETDQYVDDDGFISVLISYVRI--- 67
+ S E ++ G D D +S+ IS I
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 68 ------VTCFVTMM-----------VTTFVWAIVMLLLL----PWP--YQRIRQGNIYGH 104
VT + T +V + + W + +R+ I
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA-I--- 300
Query: 105 VTGRLLMWILGNPVKIEGTEFADKRAIYIS--------NHASPIDIFLLMWLTPTGTV-G 155
+L +I G + E ++ S N P +P ++
Sbjct: 301 ---TVLFFI-G----VRCYEAYPNTSLPPSILEDSLENNEGVP---------SPMLSISN 343
Query: 156 IAKKEIIWYPLFGQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPE----- 210
+ ++++ ++ +++N L +SL+ +
Sbjct: 344 LTQEQVQ------------DYV--NKTN-----SHLPAGKQV----EISLVNGAKNLVVS 380
Query: 211 G-TRSQNGRLLPFKKGFVHMAL-QSRLPIVPIVLSGTHRAWRKGSLHIRPVPITV----K 264
G +S G L +K L QSR+P RK R +P+
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIP---------FSE-RKLKFSNRFLPVASPFHSH 430
Query: 265 YLPP 268
L P
Sbjct: 431 LLVP 434
Score = 37.0 bits (85), Expect = 0.008
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 30/77 (38%)
Query: 230 ALQSRLPIVPIVLSGTHRAWRKGSL-HIRPVPITVKYLPPISTSDW-TADKLDDYIKMVH 287
A +R P+ LS H GSL H+ VP T+ + A +L
Sbjct: 3 AYSTR----PLTLS--H-----GSLEHVLLVP----------TASFFIASQL-------Q 34
Query: 288 DMYVKNLPEPQKPYASD 304
+ + K LPEP + +A+D
Sbjct: 35 EQFNKILPEPTEGFAAD 51
Score = 29.2 bits (65), Expect = 2.0
Identities = 57/357 (15%), Positives = 113/357 (31%), Gaps = 117/357 (32%)
Query: 14 RFESFLDTSCEQPNVKEPPRVSVKQEAGFRPKAETDQYVDDD---GFISVLISYVRIVTC 70
+F ++ + E V + +V F + Y++ + + L+
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEF-----ENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 71 FVTMMVTTFVWAIVMLLLLPWPYQRIRQGNIYGHV-TGRL-LMWILGNPVKIEG---TE- 124
++ ++ A ++ P+ + ++ V G L+ I G G T+
Sbjct: 118 KTKELIKNYITA---RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG------GQGNTDD 168
Query: 125 -FADKRAIY----------ISNHA--------SPID---IF-----LLMWL-----TPTG 152
F + R +Y I A + +D +F +L WL TP
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 153 ----TVGIAKKEIIWYPLFG--QL---YVLAKHIRIDRSNPSAAIQSLKEAAHAIV---- 199
++ I+ PL G QL V AK + + ++ + +V
Sbjct: 229 DYLLSIPIS------CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA 282
Query: 200 ----------KDNLSLII---FPEGTRSQNGRLLPFKKGFVHMALQSRLPIVPIVLSGTH 246
++ I F G R P + LP + S +
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCY--EAYP----------NTSLPPSILEDSLEN 330
Query: 247 RAWRKGSLHIRPVPITVKYLPPISTSDWTADKLDDYIKMVHDMYVKNLPEPQKPYAS 303
+G P P+ +S S+ T +++ DY+ + +LP ++ S
Sbjct: 331 ---NEGV----PSPM-------LSISNLTQEQVQDYVNKTN----SHLPAGKQVEIS 369
Score = 27.7 bits (61), Expect = 7.4
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 168 GQLYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPE 210
Q YV A +R A+ ++ + I + +I +
Sbjct: 1850 NQQYVAAGDLR--------ALDTVTNVLNFIKLQKIDIIELQK 1884
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four
helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1
PDB: 1k30_A
Length = 367
Score = 38.6 bits (89), Expect = 0.002
Identities = 37/207 (17%), Positives = 59/207 (28%), Gaps = 41/207 (19%)
Query: 119 KIEGTEFADKRAIYISNHASPIDIFLLMWLT-------PTGTVGIAKKEIIWYPLFGQL- 170
IE + ISNH + D ++ L T+ +A ++ PL
Sbjct: 121 DIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFS 180
Query: 171 -------YVLAKHIR----IDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGTRS----Q 215
KH+ + + A +SLKE A + + + I P G R
Sbjct: 181 IGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPS 240
Query: 216 NGRLLPFK------KGFVHMALQSRLP--IVPIVLSGTHRAWRKGSL---------HIRP 258
G P + S +P + P+ L H S I
Sbjct: 241 TGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALL-CHDIMPPPSQVEIEIGEKRVIAF 299
Query: 259 VPITVKYLPPISTSDWTADKLDDYIKM 285
+ P IS + A +
Sbjct: 300 NGAGLSVAPEISFEEIAATHKNPEEVR 326
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.17
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 291 VKNLPEPQKPYASDS 305
+K L K YA DS
Sbjct: 22 LKKLQASLKLYADDS 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.22
Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 22/130 (16%)
Query: 170 LYVLAKHIRIDRSNPSAAIQSLKEAAHAIVKDNLSLI--IFPEGT-RSQNGRLLPFKKGF 226
+L K++ Q L LS+I +G N + + K
Sbjct: 304 KSLLLKYLDCR-------PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-- 354
Query: 227 VHMALQSRLPIVPIVLSGTHRAWRKGSLHIRP--VPITVKYLPPISTSDWTADKLDDYIK 284
+ ++S L ++ +R L + P I L I W D +
Sbjct: 355 LTTIIESSLNVLE---PAEYRKMFD-RLSVFPPSAHIPTILLSLI----WFDVIKSDVMV 406
Query: 285 MVHDMYVKNL 294
+V+ ++ +L
Sbjct: 407 VVNKLHKYSL 416
Score = 31.0 bits (69), Expect = 0.56
Identities = 40/318 (12%), Positives = 84/318 (26%), Gaps = 89/318 (27%)
Query: 10 MRNRRFESFLDTSCEQPNVKEPPRVSVKQ-EAGFRPKAETDQYVD-----DDGFISVLIS 63
M + + + ++ + +A R ++ Y + + +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN------VQ 254
Query: 64 YVRIVTCF---VTMMVTTFVWAIVMLLLLPWPYQRIRQGNIYGHVTGR-----LLMWI-- 113
+ F +++TT + V L I + +T LL ++
Sbjct: 255 NAKAWNAFNLSCKILLTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 114 ----------LGNPVKIE--GTEFADKRAIY-------ISNHASPIDIFLLMWLTPTGTV 154
NP ++ D A + + I+ L + L P
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPA--- 369
Query: 155 GIAKKEIIWYPLFGQLYVLAKHIRIDRSNPSAAIQSL-----KEAAHAIVKD--NLSLII 207
+ +F +L V I P+ + + K +V SL+
Sbjct: 370 -------EYRKMFDRLSVFPPSAHI----PTILLSLIWFDVIKSDVMVVVNKLHKYSLV- 417
Query: 208 FPEGTRSQNGRLLPFKKGFVHMALQSRLPIVPIVLSGTHRAWRKGSLHIRPVPITVKYLP 267
+ + L+ ++ + + +LH I Y
Sbjct: 418 --------EKQPKESTISIPSIYLELKVKLE-----------NEYALHRS---IVDHYNI 455
Query: 268 P--ISTSDWTADKLDDYI 283
P + D LD Y
Sbjct: 456 PKTFDSDDLIPPYLDQYF 473
Score = 29.1 bits (64), Expect = 2.5
Identities = 31/254 (12%), Positives = 70/254 (27%), Gaps = 73/254 (28%)
Query: 7 ASFMRNR--RFESFLDTSCEQPNVKEPPRVSVKQEAGFRPKAETDQYVDDDGFISVLISY 64
A +R+ ++++ +C++ + S+ P + +SV
Sbjct: 334 AESIRDGLATWDNWKHVNCDK--LTTIIESSLNV---LEPAEYRKMFDR----LSVFPPS 384
Query: 65 VRIVTCFVTMMVTTFVWA-----IVML---------LLLPWP----------YQRIRQ-- 98
I ++ + +W VM+ L+ P Y ++
Sbjct: 385 AHI-----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 99 -GNIYGHVTGRLLMWILGNPVKIEGTEFADKRA-----IYISNHASPID----------I 142
H R ++ P + + +I +H I+ +
Sbjct: 440 ENEYALH---RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 143 FL-LMWLT----PTGTVGIAKKEIIWYPLFGQLYVLAKHIRIDRSNPSAAIQSLKE---- 193
FL +L T A I+ QL +I + + ++ +
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSIL--NTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 194 -AAHAIVKDNLSLI 206
+ I L+
Sbjct: 555 IEENLICSKYTDLL 568
>3jvo_A GP6; 13-membered ring, viral protein; HET: MSE; 2.10A
{Enterobacteria phage HK97}
Length = 108
Score = 27.3 bits (60), Expect = 2.6
Identities = 4/37 (10%), Positives = 8/37 (21%)
Query: 176 HIRIDRSNPSAAIQSLKEAAHAIVKDNLSLIIFPEGT 212
I + + I +AA +
Sbjct: 17 QIEFEEDDRDELITLYAQAAFDYCMRWCDEPAWKVAA 53
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
transport, major facilitator SUPE transporter, MFS;
3.30A {Streptococcus thermophilus}
Length = 491
Score = 27.0 bits (60), Expect = 9.1
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 56 GFISVLISYVRIVTCFVTMMVTTFVWAIVMLLLLPW 91
+ L + V F + + V IV++ L
Sbjct: 439 AQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKR 474
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.428
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,895,696
Number of extensions: 295532
Number of successful extensions: 506
Number of sequences better than 10.0: 1
Number of HSP's gapped: 503
Number of HSP's successfully gapped: 15
Length of query: 312
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 219
Effective length of database: 4,105,140
Effective search space: 899025660
Effective search space used: 899025660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)