Query 021486
Match_columns 312
No_of_seqs 309 out of 1444
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 04:50:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 2E-34 6.7E-39 233.1 9.3 105 11-116 1-105 (105)
2 3zqc_A MYB3; transcription-DNA 100.0 9E-34 3.1E-38 238.3 10.2 115 13-128 1-115 (131)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 7.2E-34 2.5E-38 231.3 9.1 104 14-118 1-104 (107)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 1.9E-33 6.4E-38 235.2 8.6 108 8-116 21-128 (128)
5 3osg_A MYB21; transcription-DN 100.0 3.1E-33 1.1E-37 233.8 9.8 105 8-114 5-109 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 3.3E-31 1.1E-35 228.9 8.5 109 7-116 51-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 7.4E-31 2.5E-35 226.7 4.4 103 11-114 3-106 (159)
8 2dim_A Cell division cycle 5-l 99.8 4.3E-22 1.5E-26 150.4 2.1 67 8-75 3-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 2.1E-21 7.3E-26 162.0 4.7 74 40-114 1-75 (128)
10 2llk_A Cyclin-D-binding MYB-li 99.7 1.6E-18 5.3E-23 132.8 4.8 59 53-112 9-67 (73)
11 1ign_A Protein (RAP1); RAP1,ye 99.7 4.2E-18 1.5E-22 155.9 7.0 106 9-115 3-200 (246)
12 2cu7_A KIAA1915 protein; nucle 99.7 1E-17 3.5E-22 127.2 7.9 65 61-126 3-67 (72)
13 2din_A Cell division cycle 5-l 99.7 2.3E-17 8E-22 123.0 7.4 61 59-120 1-61 (66)
14 2juh_A Telomere binding protei 99.7 4.4E-18 1.5E-22 141.9 3.1 83 9-91 12-103 (121)
15 2d9a_A B-MYB, MYB-related prot 99.7 1.3E-17 4.3E-22 122.2 3.5 57 9-66 3-59 (60)
16 2roh_A RTBP1, telomere binding 99.7 2.4E-17 8.1E-22 137.6 4.5 80 9-88 26-114 (122)
17 1gvd_A MYB proto-oncogene prot 99.7 1.8E-17 6E-22 118.1 2.9 52 12-64 1-52 (52)
18 1guu_A C-MYB, MYB proto-oncoge 99.6 3.1E-17 1.1E-21 116.7 2.2 52 12-64 1-52 (52)
19 2d9a_A B-MYB, MYB-related prot 99.6 9E-17 3.1E-21 117.6 4.7 55 62-116 3-58 (60)
20 1ity_A TRF1; helix-turn-helix, 99.6 5.4E-17 1.9E-21 122.1 3.4 63 9-71 5-68 (69)
21 2dim_A Cell division cycle 5-l 99.6 1.4E-16 4.8E-21 120.0 5.5 63 62-124 4-67 (70)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 3.3E-16 1.1E-20 111.4 6.0 50 65-114 1-51 (52)
23 1ity_A TRF1; helix-turn-helix, 99.6 6.7E-16 2.3E-20 116.1 6.5 61 60-120 3-66 (69)
24 1gvd_A MYB proto-oncogene prot 99.6 5.8E-16 2E-20 110.2 5.7 50 65-114 1-51 (52)
25 3sjm_A Telomeric repeat-bindin 99.6 1.8E-16 6.2E-21 118.2 2.2 56 11-66 8-64 (64)
26 1w0t_A Telomeric repeat bindin 99.6 1.6E-15 5.5E-20 108.5 6.3 50 66-115 1-53 (53)
27 1x41_A Transcriptional adaptor 99.6 6.1E-16 2.1E-20 113.5 3.2 54 10-64 4-57 (60)
28 1x41_A Transcriptional adaptor 99.6 2.4E-15 8.2E-20 110.3 6.3 53 62-114 3-56 (60)
29 1w0t_A Telomeric repeat bindin 99.5 1.1E-15 3.6E-20 109.4 2.1 50 13-62 1-51 (53)
30 2yum_A ZZZ3 protein, zinc fing 99.5 5.8E-15 2E-19 112.5 5.9 57 62-118 3-65 (75)
31 2din_A Cell division cycle 5-l 99.5 5.6E-16 1.9E-20 115.5 0.1 58 8-68 3-60 (66)
32 2yum_A ZZZ3 protein, zinc fing 99.5 1.5E-15 5E-20 115.8 1.4 61 8-69 2-67 (75)
33 3sjm_A Telomeric repeat-bindin 99.5 1.1E-14 3.7E-19 108.6 5.8 51 65-115 9-62 (64)
34 2elk_A SPCC24B10.08C protein; 99.5 3.6E-15 1.2E-19 108.8 2.6 52 10-61 5-56 (58)
35 2elk_A SPCC24B10.08C protein; 99.5 2.3E-14 7.9E-19 104.5 6.5 50 63-112 5-56 (58)
36 2ltp_A Nuclear receptor corepr 99.2 1.7E-15 6E-20 119.6 0.0 57 59-115 8-64 (89)
37 2cu7_A KIAA1915 protein; nucle 99.5 1.2E-14 3.9E-19 110.3 1.5 58 8-67 3-60 (72)
38 2cqr_A RSGI RUH-043, DNAJ homo 99.4 2.7E-13 9.2E-18 103.7 6.1 51 63-113 14-68 (73)
39 2aje_A Telomere repeat-binding 99.4 6.1E-14 2.1E-18 114.3 2.5 78 9-86 8-94 (105)
40 1gv2_A C-MYB, MYB proto-oncoge 99.4 1.2E-13 4E-18 111.1 4.2 50 64-113 1-51 (105)
41 3osg_A MYB21; transcription-DN 99.4 1.6E-13 5.6E-18 114.1 5.0 55 62-116 6-60 (126)
42 2llk_A Cyclin-D-binding MYB-li 99.4 1.2E-13 4E-18 105.7 3.4 58 7-68 16-73 (73)
43 2ckx_A NGTRF1, telomere bindin 99.4 2.3E-13 7.9E-18 106.5 4.2 69 15-84 1-79 (83)
44 2yus_A SWI/SNF-related matrix- 99.3 6.8E-13 2.3E-17 102.8 4.8 48 64-111 15-62 (79)
45 3zqc_A MYB3; transcription-DNA 99.3 2.3E-13 7.8E-18 113.9 2.2 84 7-96 47-130 (131)
46 2k9n_A MYB24; R2R3 domain, DNA 99.3 7.1E-13 2.4E-17 107.2 4.2 49 67-115 1-50 (107)
47 2yus_A SWI/SNF-related matrix- 99.3 8.2E-13 2.8E-17 102.3 4.1 53 7-61 11-63 (79)
48 2ckx_A NGTRF1, telomere bindin 99.3 4.8E-12 1.6E-16 99.0 6.7 49 68-116 1-54 (83)
49 1x58_A Hypothetical protein 49 99.3 4.4E-12 1.5E-16 93.9 5.9 50 65-114 6-58 (62)
50 2cjj_A Radialis; plant develop 99.3 9.2E-12 3.1E-16 99.3 7.4 58 66-123 7-69 (93)
51 1ign_A Protein (RAP1); RAP1,ye 99.3 2.4E-12 8.3E-17 117.9 4.5 55 63-117 4-64 (246)
52 2ltp_A Nuclear receptor corepr 98.9 5.8E-13 2E-17 105.1 0.0 54 8-63 10-63 (89)
53 2aje_A Telomere repeat-binding 99.2 1.1E-11 3.9E-16 100.8 7.4 55 62-116 8-67 (105)
54 2juh_A Telomere binding protei 99.2 1.3E-11 4.5E-16 102.8 7.7 56 61-116 11-71 (121)
55 2roh_A RTBP1, telomere binding 99.2 5.9E-11 2E-15 99.0 10.3 55 63-117 27-86 (122)
56 2cqr_A RSGI RUH-043, DNAJ homo 99.2 2.2E-12 7.6E-17 98.6 1.1 55 7-62 11-68 (73)
57 2eqr_A N-COR1, N-COR, nuclear 99.0 7.9E-10 2.7E-14 81.2 6.8 48 66-113 11-58 (61)
58 3hm5_A DNA methyltransferase 1 99.0 7.7E-10 2.6E-14 88.2 6.8 68 49-120 16-88 (93)
59 2cqq_A RSGI RUH-037, DNAJ homo 99.0 7E-10 2.4E-14 84.5 5.7 58 64-122 5-66 (72)
60 2cjj_A Radialis; plant develop 98.9 3.5E-10 1.2E-14 90.2 1.1 48 13-61 7-57 (93)
61 2iw5_B Protein corest, REST co 98.8 7.1E-09 2.4E-13 94.4 5.7 49 66-114 132-180 (235)
62 1x58_A Hypothetical protein 49 98.7 4.1E-09 1.4E-13 78.0 1.7 50 11-62 5-57 (62)
63 2eqr_A N-COR1, N-COR, nuclear 98.6 1.1E-08 3.7E-13 75.1 2.7 52 8-61 6-57 (61)
64 1wgx_A KIAA1903 protein; MYB D 98.5 1.2E-07 4E-12 72.4 5.1 46 67-112 8-57 (73)
65 2cqq_A RSGI RUH-037, DNAJ homo 98.5 2.7E-08 9.1E-13 75.7 1.3 51 10-62 4-57 (72)
66 2xag_B REST corepressor 1; ami 98.4 1.3E-07 4.3E-12 94.6 4.8 46 68-113 381-426 (482)
67 1fex_A TRF2-interacting telome 98.4 3.5E-07 1.2E-11 66.9 4.9 47 67-113 2-58 (59)
68 1fex_A TRF2-interacting telome 98.3 8.4E-08 2.9E-12 70.2 0.9 48 14-62 2-58 (59)
69 2yqk_A Arginine-glutamic acid 98.2 4.2E-06 1.4E-10 61.7 6.8 50 62-111 4-54 (63)
70 1wgx_A KIAA1903 protein; MYB D 98.2 5E-07 1.7E-11 68.9 1.6 48 14-62 8-58 (73)
71 2iw5_B Protein corest, REST co 98.2 7.3E-07 2.5E-11 81.2 3.0 50 11-62 130-179 (235)
72 1ug2_A 2610100B20RIK gene prod 98.1 2.7E-06 9.3E-11 67.2 5.6 50 68-117 34-86 (95)
73 2lr8_A CAsp8-associated protei 97.2 9.2E-07 3.1E-11 66.4 0.0 45 69-114 16-63 (70)
74 1ofc_X ISWI protein; nuclear p 98.0 1.1E-05 3.9E-10 76.4 7.0 100 15-115 111-276 (304)
75 4iej_A DNA methyltransferase 1 97.9 2.1E-05 7.1E-10 62.5 7.2 61 55-119 22-87 (93)
76 4eef_G F-HB80.4, designed hema 97.9 2E-06 7E-11 65.5 1.1 43 67-109 20-66 (74)
77 2crg_A Metastasis associated p 97.7 8.9E-05 3E-09 55.7 6.3 45 67-111 8-53 (70)
78 4a69_C Nuclear receptor corepr 97.6 7E-05 2.4E-09 59.4 5.9 46 67-112 43-88 (94)
79 4eef_G F-HB80.4, designed hema 97.6 1.2E-05 4.2E-10 61.2 1.3 44 14-58 20-66 (74)
80 2yqk_A Arginine-glutamic acid 97.5 4.8E-05 1.7E-09 55.9 2.4 50 9-60 4-54 (63)
81 2xag_B REST corepressor 1; ami 97.3 9.8E-05 3.3E-09 73.9 3.0 47 12-60 378-424 (482)
82 2ebi_A DNA binding protein GT- 97.2 0.00032 1.1E-08 54.0 4.6 49 67-115 4-66 (86)
83 3hm5_A DNA methyltransferase 1 97.0 0.00019 6.5E-09 57.0 1.8 49 12-61 28-80 (93)
84 2y9y_A Imitation switch protei 96.7 0.003 1E-07 61.4 7.2 104 15-118 124-295 (374)
85 2crg_A Metastasis associated p 96.6 0.00073 2.5E-08 50.7 1.7 46 13-60 7-53 (70)
86 4a69_C Nuclear receptor corepr 96.5 0.00084 2.9E-08 53.1 1.8 45 14-60 43-87 (94)
87 2lr8_A CAsp8-associated protei 95.4 0.00049 1.7E-08 51.6 0.0 48 13-62 13-62 (70)
88 1ug2_A 2610100B20RIK gene prod 96.3 0.0016 5.6E-08 51.4 2.1 45 14-59 33-79 (95)
89 2ebi_A DNA binding protein GT- 96.2 0.00056 1.9E-08 52.7 -1.0 49 13-61 3-63 (86)
90 4b4c_A Chromodomain-helicase-D 95.4 0.013 4.6E-07 51.5 4.6 39 4-42 124-162 (211)
91 1irz_A ARR10-B; helix-turn-hel 93.8 0.16 5.4E-06 37.5 6.2 48 65-112 5-57 (64)
92 4iej_A DNA methyltransferase 1 92.9 0.04 1.4E-06 43.6 1.9 49 12-61 28-80 (93)
93 1ofc_X ISWI protein; nuclear p 92.6 0.18 6.3E-06 47.6 6.4 47 67-113 110-157 (304)
94 4b4c_A Chromodomain-helicase-D 92.2 0.24 8.1E-06 43.3 6.2 52 65-116 5-61 (211)
95 2xb0_X Chromo domain-containin 90.5 0.23 7.8E-06 46.2 4.5 28 15-42 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 81.5 0.88 3E-05 33.5 2.6 47 11-58 4-54 (64)
97 2xb0_X Chromo domain-containin 75.7 5.7 0.0002 36.7 6.8 48 67-114 3-55 (270)
98 2o8x_A Probable RNA polymerase 63.6 14 0.00046 25.4 5.2 41 73-114 18-58 (70)
99 1u78_A TC3 transposase, transp 60.4 55 0.0019 25.2 8.9 87 15-106 5-98 (141)
100 1ku3_A Sigma factor SIGA; heli 59.9 13 0.00045 26.3 4.7 41 74-115 14-58 (73)
101 2li6_A SWI/SNF chromatin-remod 57.0 7.7 0.00026 31.0 3.2 38 77-114 53-98 (116)
102 2p7v_B Sigma-70, RNA polymeras 56.0 19 0.00066 25.0 4.9 40 74-114 9-52 (68)
103 2lm1_A Lysine-specific demethy 55.6 19 0.00066 28.0 5.3 39 76-114 47-97 (107)
104 3cz6_A DNA-binding protein RAP 54.8 9.7 0.00033 32.9 3.6 29 10-41 110-146 (168)
105 2jrz_A Histone demethylase jar 52.8 18 0.00061 28.9 4.7 39 76-114 43-93 (117)
106 1kkx_A Transcription regulator 51.1 16 0.00055 29.6 4.2 41 77-117 52-100 (123)
107 2cxy_A BAF250B subunit, HBAF25 50.3 22 0.00076 28.6 5.0 39 76-114 54-104 (125)
108 2y9y_A Imitation switch protei 50.1 26 0.0009 33.8 6.2 45 67-111 123-169 (374)
109 3hug_A RNA polymerase sigma fa 48.5 30 0.001 25.5 5.2 41 73-114 40-80 (92)
110 2eqy_A RBP2 like, jumonji, at 48.4 24 0.00083 28.3 4.9 38 77-114 46-95 (122)
111 2rq5_A Protein jumonji; develo 46.1 5.2 0.00018 32.6 0.5 45 36-83 65-113 (121)
112 1x3u_A Transcriptional regulat 44.6 51 0.0018 23.0 5.8 42 70-114 17-58 (79)
113 2li6_A SWI/SNF chromatin-remod 43.0 5.5 0.00019 31.9 0.2 39 24-63 53-98 (116)
114 2rq5_A Protein jumonji; develo 41.7 28 0.00096 28.2 4.3 79 12-116 5-98 (121)
115 2kk0_A AT-rich interactive dom 40.4 33 0.0011 28.4 4.6 39 76-114 67-118 (145)
116 2jxj_A Histone demethylase jar 39.7 15 0.00051 28.0 2.3 38 77-114 40-89 (96)
117 3ulq_B Transcriptional regulat 39.6 61 0.0021 24.2 5.7 46 66-114 26-71 (90)
118 1k78_A Paired box protein PAX5 39.3 94 0.0032 24.4 7.2 79 14-96 30-118 (149)
119 1c20_A DEAD ringer protein; DN 38.5 44 0.0015 26.9 5.1 39 76-114 55-106 (128)
120 1ig6_A MRF-2, modulator recogn 38.3 8.6 0.00029 30.1 0.7 41 23-63 36-87 (107)
121 1or7_A Sigma-24, RNA polymeras 37.8 48 0.0016 26.9 5.3 29 85-114 155-183 (194)
122 1tty_A Sigma-A, RNA polymerase 37.0 48 0.0016 24.2 4.7 40 74-114 22-65 (87)
123 1fse_A GERE; helix-turn-helix 36.9 61 0.0021 22.1 5.1 44 68-114 10-53 (74)
124 1ig6_A MRF-2, modulator recogn 36.8 20 0.0007 27.9 2.7 39 76-114 36-87 (107)
125 1je8_A Nitrate/nitrite respons 36.5 58 0.002 23.6 5.1 43 69-114 21-63 (82)
126 3c57_A Two component transcrip 36.1 60 0.002 24.2 5.2 43 69-114 27-69 (95)
127 2k27_A Paired box protein PAX- 35.7 1.3E+02 0.0045 24.0 7.6 77 15-96 24-111 (159)
128 2jrz_A Histone demethylase jar 34.5 8 0.00027 31.0 -0.1 41 23-63 43-93 (117)
129 1c20_A DEAD ringer protein; DN 31.9 8.9 0.00031 31.1 -0.2 40 24-63 56-106 (128)
130 2yqf_A Ankyrin-1; death domain 30.9 67 0.0023 25.0 4.8 35 71-106 14-48 (111)
131 3i4p_A Transcriptional regulat 30.8 61 0.0021 26.5 4.8 45 73-118 3-48 (162)
132 1xsv_A Hypothetical UPF0122 pr 29.9 87 0.003 24.3 5.4 40 74-114 29-68 (113)
133 2jpc_A SSRB; DNA binding prote 29.9 86 0.003 20.7 4.7 38 75-114 3-40 (61)
134 2kk0_A AT-rich interactive dom 29.4 21 0.00073 29.6 1.7 54 24-77 68-134 (145)
135 1rp3_A RNA polymerase sigma fa 29.2 78 0.0027 26.3 5.3 36 78-114 195-230 (239)
136 3i4p_A Transcriptional regulat 29.1 12 0.00042 30.8 0.2 43 20-64 3-45 (162)
137 3mzy_A RNA polymerase sigma-H 28.4 66 0.0023 24.9 4.5 29 85-114 123-151 (164)
138 2of5_H Leucine-rich repeat and 27.1 69 0.0024 25.3 4.3 31 75-106 13-43 (118)
139 2q1z_A RPOE, ECF SIGE; ECF sig 26.9 40 0.0014 27.2 2.9 30 85-115 150-179 (184)
140 3e7l_A Transcriptional regulat 26.5 88 0.003 21.5 4.4 42 73-123 19-60 (63)
141 2rnj_A Response regulator prot 25.5 74 0.0025 23.3 4.0 42 70-114 30-71 (91)
142 2of5_A Death domain-containing 25.2 78 0.0027 25.1 4.3 29 77-106 26-54 (114)
143 2o71_A Death domain-containing 24.9 83 0.0028 25.0 4.4 29 77-106 26-54 (115)
144 1ntc_A Protein (nitrogen regul 24.6 1.1E+02 0.0038 22.7 4.9 34 73-107 51-84 (91)
145 1hlv_A CENP-B, major centromer 23.6 92 0.0031 23.9 4.4 92 13-114 4-110 (131)
146 2dbb_A Putative HTH-type trans 23.6 1.6E+02 0.0054 23.3 6.0 44 73-117 9-53 (151)
147 3cz6_A DNA-binding protein RAP 23.0 50 0.0017 28.4 2.8 17 63-79 110-126 (168)
148 1p4w_A RCSB; solution structur 21.8 1.7E+02 0.0058 22.2 5.6 45 67-114 32-76 (99)
149 2xsa_A Ogoga, hyaluronoglucosa 20.4 1.8E+02 0.006 28.7 6.5 59 11-84 8-66 (447)
150 1tc3_C Protein (TC3 transposas 20.4 1.5E+02 0.0051 17.8 5.4 38 69-108 5-42 (51)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=2e-34 Score=233.05 Aligned_cols=105 Identities=46% Similarity=0.913 Sum_probs=99.5
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhcCCchH
Q 021486 11 GLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTEEEEKLVIQLHGILGNRWA 90 (312)
Q Consensus 11 ~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kWs 90 (312)
.+++|+||+|||++|+++|++||.++|..||+.+++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 479999999999999999999998899999999986 9999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHHHH
Q 021486 91 AIASQLPGRTDNEIKNLWNTHLKKRM 116 (312)
Q Consensus 91 ~IA~~LpgRT~~qcKnRW~~lLkkkl 116 (312)
.||++|||||++||++||+.++++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999998764
No 2
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=9e-34 Score=238.34 Aligned_cols=115 Identities=37% Similarity=0.695 Sum_probs=106.8
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhcCCchHHH
Q 021486 13 KKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTEEEEKLVIQLHGILGNRWAAI 92 (312)
Q Consensus 13 kKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kWs~I 92 (312)
.||+||+|||++|+++|.+||.++|..||+.+++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|..|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 3899999999999999999998899999999986 999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Q 021486 93 ASQLPGRTDNEIKNLWNTHLKKRMLLMGLDPQTHEP 128 (312)
Q Consensus 93 A~~LpgRT~~qcKnRW~~lLkkkl~~~g~~p~~~~p 128 (312)
|++|||||++||++||+++|++++...........|
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p 115 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP 115 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc
Confidence 999999999999999999999998766555444333
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=7.2e-34 Score=231.27 Aligned_cols=104 Identities=32% Similarity=0.594 Sum_probs=100.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhcCCchHHHh
Q 021486 14 KGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTEEEEKLVIQLHGILGNRWAAIA 93 (312)
Q Consensus 14 KG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA 93 (312)
||+||+|||++|+++|++||.++|..||..+++ |+++||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 799999999999999999998899999999986 9999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHh
Q 021486 94 SQLPGRTDNEIKNLWNTHLKKRMLL 118 (312)
Q Consensus 94 ~~LpgRT~~qcKnRW~~lLkkkl~~ 118 (312)
++|||||++||++||+.++++..+.
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999999999999887654
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.9e-33 Score=235.18 Aligned_cols=108 Identities=44% Similarity=0.887 Sum_probs=102.6
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhcCC
Q 021486 8 DKKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTEEEEKLVIQLHGILGN 87 (312)
Q Consensus 8 ~k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~ 87 (312)
.+|++++|+||+|||++|+++|++||.++|..||+.+++ |+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 478999999999999999999999998899999999986 9999999999999999999999999999999999999999
Q ss_pred chHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 021486 88 RWAAIASQLPGRTDNEIKNLWNTHLKKRM 116 (312)
Q Consensus 88 kWs~IA~~LpgRT~~qcKnRW~~lLkkkl 116 (312)
+|..||++|||||++||++||+.++++++
T Consensus 100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 100 RWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999998764
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=3.1e-33 Score=233.80 Aligned_cols=105 Identities=41% Similarity=0.723 Sum_probs=100.8
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhcCC
Q 021486 8 DKKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTEEEEKLVIQLHGILGN 87 (312)
Q Consensus 8 ~k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~ 87 (312)
.++..+||+||+|||++|+++|++||. +|..||+.+++ |+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999997 99999999986 9999999999999999999999999999999999999999
Q ss_pred chHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 88 RWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 88 kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
+|..||+.|||||++||++||+.++++
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998876
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=3.3e-31 Score=228.88 Aligned_cols=109 Identities=44% Similarity=0.868 Sum_probs=103.4
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhcC
Q 021486 7 CDKKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTEEEEKLVIQLHGILG 86 (312)
Q Consensus 7 c~k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G 86 (312)
..+|.+++|+||+|||++|+++|++||..+|..||+.+++ |+++||+.||.++|+|.+++++||+|||.+|++++.+||
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 3578999999999999999999999998789999999986 999999999999999999999999999999999999999
Q ss_pred CchHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 021486 87 NRWAAIASQLPGRTDNEIKNLWNTHLKKRM 116 (312)
Q Consensus 87 ~kWs~IA~~LpgRT~~qcKnRW~~lLkkkl 116 (312)
++|..||++|||||+++|++||+.++++++
T Consensus 130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~ 159 (159)
T 1h89_C 130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159 (159)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999998764
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=7.4e-31 Score=226.68 Aligned_cols=103 Identities=35% Similarity=0.743 Sum_probs=60.6
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhcCC-ch
Q 021486 11 GLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTEEEEKLVIQLHGILGN-RW 89 (312)
Q Consensus 11 ~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~-kW 89 (312)
+++||+||+|||++|+++|++||.++|..||+.+++ |+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 478999999999999999999998899999999986 9999999999999999999999999999999999999996 69
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 90 AAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 90 s~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
..||..|||||+.||++||+++|.+
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p 106 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNP 106 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 9999999999999999999998754
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4.3e-22 Score=150.44 Aligned_cols=67 Identities=28% Similarity=0.617 Sum_probs=64.1
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCCCCCCCCCHHHH
Q 021486 8 DKKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTEEEE 75 (312)
Q Consensus 8 ~k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ikrg~WT~EED 75 (312)
..+.+++|+||+|||++|+++|++||.++|..||+.|++ |+++||++||.++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 357899999999999999999999998899999999996 9999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.83 E-value=2.1e-21 Score=161.98 Aligned_cols=74 Identities=32% Similarity=0.726 Sum_probs=50.6
Q ss_pred hchhhcCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhcCC-chHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 40 LPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTEEEEKLVIQLHGILGN-RWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 40 IAk~lg~~Rs~kQCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
||+.+++ |+++||+.||.++|+|.+++++||+|||++|+++|.+||. +|..||..|||||+.||++||+++|.+
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNP 75 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCS
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccc
Confidence 6788886 9999999999999999999999999999999999999996 699999999999999999999998754
No 10
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-18 Score=132.84 Aligned_cols=59 Identities=24% Similarity=0.305 Sum_probs=47.4
Q ss_pred cccccccccCCCCCCCCCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHH
Q 021486 53 CRLRWTNYLRPDIKRGPFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHL 112 (312)
Q Consensus 53 Cr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lL 112 (312)
..-||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||++|||+||+.+.
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999 999999999999653
No 11
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.72 E-value=4.2e-18 Score=155.93 Aligned_cols=106 Identities=18% Similarity=0.324 Sum_probs=92.1
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCC-----CcchhchhhcCcccccccccccccccCCCCC-----------------
Q 021486 9 KKGLKKGPWAPEEDEILVEYIKRNGHG-----SWRSLPKLAGLLRCGKSCRLRWTNYLRPDIK----------------- 66 (312)
Q Consensus 9 k~~lkKG~WT~EED~~L~~lV~kyG~~-----~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ik----------------- 66 (312)
.+.++|++||+|||++|+++|++||.. .|..||+.|++ |++.|||.||.++|.+.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 357889999999999999999999753 29999999997 9999999999999999986
Q ss_pred ------------CCCCCHHHHHHHHHHHhh-c------------------------------------------------
Q 021486 67 ------------RGPFTEEEEKLVIQLHGI-L------------------------------------------------ 85 (312)
Q Consensus 67 ------------rg~WT~EED~~Ll~lv~~-~------------------------------------------------ 85 (312)
+..||.+||-.|+..+.+ |
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999998876 1
Q ss_pred -----CC----chHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 021486 86 -----GN----RWAAIASQLPGRTDNEIKNLWNTHLKKR 115 (312)
Q Consensus 86 -----G~----kWs~IA~~LpgRT~~qcKnRW~~lLkkk 115 (312)
|. .|..||+.+|+||.+++|+||...|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999998774
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.72 E-value=1e-17 Score=127.17 Aligned_cols=65 Identities=26% Similarity=0.303 Sum_probs=60.0
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 021486 61 LRPDIKRGPFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRMLLMGLDPQTH 126 (312)
Q Consensus 61 L~p~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkkkl~~~g~~p~~~ 126 (312)
++|.+++++||+|||++|+++|.+||++|..||++|||||++|||+||+.+++++++. |+++...
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~ 67 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP 67 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence 5789999999999999999999999999999999999999999999999999998776 7766554
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.3e-17 Score=123.02 Aligned_cols=61 Identities=21% Similarity=0.320 Sum_probs=57.5
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHHHHHhCC
Q 021486 59 NYLRPDIKRGPFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRMLLMG 120 (312)
Q Consensus 59 n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkkkl~~~g 120 (312)
.+|+|.+++++||.|||++|+++|++||++|..||+ |+|||++||++||+.+|++.+.+..
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 379999999999999999999999999999999999 8899999999999999999987643
No 14
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.69 E-value=4.4e-18 Score=141.87 Aligned_cols=83 Identities=23% Similarity=0.384 Sum_probs=77.0
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhc---CcccccccccccccccC-----CCCCCC-CCCHHHHHHHH
Q 021486 9 KKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAG---LLRCGKSCRLRWTNYLR-----PDIKRG-PFTEEEEKLVI 79 (312)
Q Consensus 9 k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg---~~Rs~kQCr~Rw~n~L~-----p~ikrg-~WT~EED~~Ll 79 (312)
++..++++||+|||+.|+++|++||.++|..|++.++ ..|++.+|++||+|+|+ |.++++ +|+++|+.+|+
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~ 91 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL 91 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHH
Confidence 5678999999999999999999999889999999852 24999999999999998 999999 99999999999
Q ss_pred HHHhhcCCchHH
Q 021486 80 QLHGILGNRWAA 91 (312)
Q Consensus 80 ~lv~~~G~kWs~ 91 (312)
.++..+||+|..
T Consensus 92 ~~h~~~gn~~~~ 103 (121)
T 2juh_A 92 AAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHccchhc
Confidence 999999999976
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=1.3e-17 Score=122.17 Aligned_cols=57 Identities=26% Similarity=0.478 Sum_probs=54.1
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCCCC
Q 021486 9 KKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIK 66 (312)
Q Consensus 9 k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ik 66 (312)
.|.+++++||+|||++|+++|++||.++|..||+.|++ |+++||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 47899999999999999999999998899999999986 9999999999999999876
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.67 E-value=2.4e-17 Score=137.62 Aligned_cols=80 Identities=23% Similarity=0.339 Sum_probs=72.8
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhc---Cccccccccccccccc-----CCCCCCCCCCHHH-HHHHH
Q 021486 9 KKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAG---LLRCGKSCRLRWTNYL-----RPDIKRGPFTEEE-EKLVI 79 (312)
Q Consensus 9 k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg---~~Rs~kQCr~Rw~n~L-----~p~ikrg~WT~EE-D~~Ll 79 (312)
+...++++||+|||+.|+++|++||.++|..|++... ..|++.||++||+|++ +|.++++.|+++| +.+|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 4567899999999999999999999999999998641 2499999999999999 8999999999999 89999
Q ss_pred HHHhhcCCc
Q 021486 80 QLHGILGNR 88 (312)
Q Consensus 80 ~lv~~~G~k 88 (312)
+++..+|++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999974
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.67 E-value=1.8e-17 Score=118.08 Aligned_cols=52 Identities=42% Similarity=0.869 Sum_probs=49.5
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCC
Q 021486 12 LKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPD 64 (312)
Q Consensus 12 lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ 64 (312)
++||+||+|||++|+++|++||..+|..||+.+++ |+++||+.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 68999999999999999999998789999999986 99999999999999985
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.64 E-value=3.1e-17 Score=116.67 Aligned_cols=52 Identities=33% Similarity=0.721 Sum_probs=48.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCC
Q 021486 12 LKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPD 64 (312)
Q Consensus 12 lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ 64 (312)
+++|+||+|||++|+++|++||.++|..||+.+++ |+++||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 58999999999999999999998899999999986 99999999999999985
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=9e-17 Score=117.59 Aligned_cols=55 Identities=25% Similarity=0.418 Sum_probs=51.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcC-CchHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 021486 62 RPDIKRGPFTEEEEKLVIQLHGILG-NRWAAIASQLPGRTDNEIKNLWNTHLKKRM 116 (312)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~lLkkkl 116 (312)
+|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5789999999999999999999999 699999999999999999999999987654
No 20
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.64 E-value=5.4e-17 Score=122.13 Aligned_cols=63 Identities=19% Similarity=0.345 Sum_probs=58.0
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcC-cccccccccccccccCCCCCCCCCC
Q 021486 9 KKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGL-LRCGKSCRLRWTNYLRPDIKRGPFT 71 (312)
Q Consensus 9 k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~-~Rs~kQCr~Rw~n~L~p~ikrg~WT 71 (312)
++..++++||+|||++|+++|++||.++|..||+.+++ +|++.||++||.++|+|.++++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 56789999999999999999999998899999999983 3999999999999999999988753
No 21
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.4e-16 Score=120.05 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcC-CchHHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCCC
Q 021486 62 RPDIKRGPFTEEEEKLVIQLHGILG-NRWAAIASQLPGRTDNEIKNLWNTHLKKRMLLMGLDPQ 124 (312)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~lLkkkl~~~g~~p~ 124 (312)
.|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|++.+.+..|.+.
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~e 67 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGP 67 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChH
Confidence 4678999999999999999999999 79999999999999999999999999998887766654
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.63 E-value=3.3e-16 Score=111.36 Aligned_cols=50 Identities=30% Similarity=0.545 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCC-chHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 65 IKRGPFTEEEEKLVIQLHGILGN-RWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
+++++||+|||++|+++|.+||+ +|..||+.|||||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999998 999999999999999999999999865
No 23
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.61 E-value=6.7e-16 Score=116.12 Aligned_cols=61 Identities=23% Similarity=0.278 Sum_probs=55.5
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhcC-CchHHHhhhCC--CCCHHHHHHHHHHHHHHHHHhCC
Q 021486 60 YLRPDIKRGPFTEEEEKLVIQLHGILG-NRWAAIASQLP--GRTDNEIKNLWNTHLKKRMLLMG 120 (312)
Q Consensus 60 ~L~p~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~Lp--gRT~~qcKnRW~~lLkkkl~~~g 120 (312)
...+..++++||+|||++|+++|.+|| ++|..||.+|+ |||+.||++||+++|++.+.+..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~ 66 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD 66 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 345678899999999999999999999 69999999999 99999999999999999876544
No 24
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.61 E-value=5.8e-16 Score=110.17 Aligned_cols=50 Identities=36% Similarity=0.779 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCC-chHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 65 IKRGPFTEEEEKLVIQLHGILGN-RWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999997 699999999999999999999999864
No 25
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.60 E-value=1.8e-16 Score=118.23 Aligned_cols=56 Identities=25% Similarity=0.436 Sum_probs=49.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhc-CcccccccccccccccCCCCC
Q 021486 11 GLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAG-LLRCGKSCRLRWTNYLRPDIK 66 (312)
Q Consensus 11 ~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg-~~Rs~kQCr~Rw~n~L~p~ik 66 (312)
..+|++||+|||++|+++|++||.++|..|++.++ .+|++.||++||+|+++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 46899999999999999999999989999999865 249999999999999998875
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.59 E-value=1.6e-15 Score=108.47 Aligned_cols=50 Identities=28% Similarity=0.376 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcC-CchHHHhhhCC--CCCHHHHHHHHHHHHHHH
Q 021486 66 KRGPFTEEEEKLVIQLHGILG-NRWAAIASQLP--GRTDNEIKNLWNTHLKKR 115 (312)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G-~kWs~IA~~Lp--gRT~~qcKnRW~~lLkkk 115 (312)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++++.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 578999999999999999999 69999999999 999999999999998753
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=6.1e-16 Score=113.54 Aligned_cols=54 Identities=17% Similarity=0.461 Sum_probs=51.3
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCC
Q 021486 10 KGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPD 64 (312)
Q Consensus 10 ~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ 64 (312)
+.+++++||+|||++|+++|++||.++|..||+.+++ |+++||++||.++|.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence 6899999999999999999999998899999999997 99999999999999875
No 28
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=2.4e-15 Score=110.35 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=49.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcC-CchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 62 RPDIKRGPFTEEEEKLVIQLHGILG-NRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
.+.+++++||+|||++|+++|.+|| ++|..||++|||||+.||++||+++|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 7999999999999999999999998753
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.54 E-value=1.1e-15 Score=109.40 Aligned_cols=50 Identities=24% Similarity=0.454 Sum_probs=46.5
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcC-cccccccccccccccC
Q 021486 13 KKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGL-LRCGKSCRLRWTNYLR 62 (312)
Q Consensus 13 kKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~-~Rs~kQCr~Rw~n~L~ 62 (312)
++|+||+|||++|+++|++||.++|..||+.+++ +|++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 6899999999999999999998899999999983 2999999999999875
No 30
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=5.8e-15 Score=112.48 Aligned_cols=57 Identities=25% Similarity=0.219 Sum_probs=52.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcC------CchHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q 021486 62 RPDIKRGPFTEEEEKLVIQLHGILG------NRWAAIASQLPGRTDNEIKNLWNTHLKKRMLL 118 (312)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G------~kWs~IA~~LpgRT~~qcKnRW~~lLkkkl~~ 118 (312)
+|.+++++||.|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|.+.++.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999 78999999999999999999999999886543
No 31
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=5.6e-16 Score=115.48 Aligned_cols=58 Identities=24% Similarity=0.361 Sum_probs=52.9
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCCCCCC
Q 021486 8 DKKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRG 68 (312)
Q Consensus 8 ~k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ikrg 68 (312)
..|.+++++||+|||++|+++|++||. +|..||+ +++ |+++||+.||.++|+|.++++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCC
Confidence 578999999999999999999999996 9999999 544 999999999999999877664
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-15 Score=115.82 Aligned_cols=61 Identities=18% Similarity=0.271 Sum_probs=56.2
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCC-----CCcchhchhhcCcccccccccccccccCCCCCCCC
Q 021486 8 DKKGLKKGPWAPEEDEILVEYIKRNGH-----GSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGP 69 (312)
Q Consensus 8 ~k~~lkKG~WT~EED~~L~~lV~kyG~-----~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ikrg~ 69 (312)
.+|.+++++||+|||++|+++|++||. ++|..||+.|++ |+.+||+.||++||.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence 368999999999999999999999996 689999999997 9999999999999998777664
No 33
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.52 E-value=1.1e-14 Score=108.57 Aligned_cols=51 Identities=33% Similarity=0.463 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC-CchHHHhhhCC--CCCHHHHHHHHHHHHHHH
Q 021486 65 IKRGPFTEEEEKLVIQLHGILG-NRWAAIASQLP--GRTDNEIKNLWNTHLKKR 115 (312)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~Lp--gRT~~qcKnRW~~lLkkk 115 (312)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.||++||++++++.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4789999999999999999999 58999999976 999999999999998764
No 34
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=3.6e-15 Score=108.84 Aligned_cols=52 Identities=19% Similarity=0.459 Sum_probs=47.8
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCccccccccccccccc
Q 021486 10 KGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61 (312)
Q Consensus 10 ~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L 61 (312)
..+.+++||+|||++|+++|++||.++|..||+.++.+|+++||+.||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4577999999999999999999998899999999994499999999999875
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.51 E-value=2.3e-14 Score=104.54 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=46.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcC-CchHHHhhhCC-CCCHHHHHHHHHHHH
Q 021486 63 PDIKRGPFTEEEEKLVIQLHGILG-NRWAAIASQLP-GRTDNEIKNLWNTHL 112 (312)
Q Consensus 63 p~ikrg~WT~EED~~Ll~lv~~~G-~kWs~IA~~Lp-gRT~~qcKnRW~~lL 112 (312)
..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||++++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999999 89999999999 999999999999874
No 36
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.24 E-value=1.7e-15 Score=119.64 Aligned_cols=57 Identities=25% Similarity=0.240 Sum_probs=53.6
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 021486 59 NYLRPDIKRGPFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKR 115 (312)
Q Consensus 59 n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkkk 115 (312)
..+.|.+++++||.|||++|+++|.+||++|..||.+|||||++||++||+.++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 356789999999999999999999999999999999999999999999999998874
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.45 E-value=1.2e-14 Score=110.29 Aligned_cols=58 Identities=21% Similarity=0.357 Sum_probs=53.6
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCCCCC
Q 021486 8 DKKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKR 67 (312)
Q Consensus 8 ~k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ikr 67 (312)
..|.+++++||+|||++|+++|++||. +|..||+.+++ |+..||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999996 99999999997 99999999999999876655
No 38
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.40 E-value=2.7e-13 Score=103.70 Aligned_cols=51 Identities=16% Similarity=0.312 Sum_probs=47.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcC----CchHHHhhhCCCCCHHHHHHHHHHHHH
Q 021486 63 PDIKRGPFTEEEEKLVIQLHGILG----NRWAAIASQLPGRTDNEIKNLWNTHLK 113 (312)
Q Consensus 63 p~ikrg~WT~EED~~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~~lLk 113 (312)
+.+++++||.+||++|++++.+|| ++|..||++|||||.+||++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 567889999999999999999999 789999999999999999999998864
No 39
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.40 E-value=6.1e-14 Score=114.26 Aligned_cols=78 Identities=24% Similarity=0.375 Sum_probs=67.2
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhc---Cccccccccccccccc-----CCCCCCCCCCHHHHHH-HH
Q 021486 9 KKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAG---LLRCGKSCRLRWTNYL-----RPDIKRGPFTEEEEKL-VI 79 (312)
Q Consensus 9 k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg---~~Rs~kQCr~Rw~n~L-----~p~ikrg~WT~EED~~-Ll 79 (312)
++..++++||+|||+.|+++|++||.++|..|++.++ ..|+..+|++||++++ +|.+++|.-+++|-.. ++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~ 87 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVL 87 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHH
Confidence 5688999999999999999999999999999998652 2499999999999999 6999999888777665 88
Q ss_pred HHHhhcC
Q 021486 80 QLHGILG 86 (312)
Q Consensus 80 ~lv~~~G 86 (312)
+|+..+|
T Consensus 88 ~~~~~~~ 94 (105)
T 2aje_A 88 NAHGYWT 94 (105)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887655
No 40
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.40 E-value=1.2e-13 Score=111.06 Aligned_cols=50 Identities=38% Similarity=0.812 Sum_probs=47.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCC-chHHHhhhCCCCCHHHHHHHHHHHHH
Q 021486 64 DIKRGPFTEEEEKLVIQLHGILGN-RWAAIASQLPGRTDNEIKNLWNTHLK 113 (312)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~lLk 113 (312)
++++++||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 51 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccC
Confidence 478999999999999999999996 69999999999999999999999864
No 41
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.40 E-value=1.6e-13 Score=114.15 Aligned_cols=55 Identities=24% Similarity=0.503 Sum_probs=50.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q 021486 62 RPDIKRGPFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRM 116 (312)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkkkl 116 (312)
.+..++++||+|||++|+++|.+||.+|..||..|||||+.||+.||+++|.+.+
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~ 60 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSI 60 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccc
Confidence 4567899999999999999999999999999999999999999999999986543
No 42
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.39 E-value=1.2e-13 Score=105.71 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=48.5
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCCCCCC
Q 021486 7 CDKKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRG 68 (312)
Q Consensus 7 c~k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ikrg 68 (312)
...|++++|+||+|||++|+++|++||. .|..||+.+ + |++.||+.||.. |....+.|
T Consensus 16 ~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~~G 73 (73)
T 2llk_A 16 FQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-G-RSASSVKDRCRL-MKDTCNTG 73 (73)
T ss_dssp ---CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-T-SCHHHHHHHHHH-CSCCCSCC
T ss_pred ecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-C-CCHHHHHHHHHH-HHHHccCC
Confidence 4579999999999999999999999995 699999999 4 999999999974 55555443
No 43
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.37 E-value=2.3e-13 Score=106.47 Aligned_cols=69 Identities=28% Similarity=0.508 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhchh----hcCccccccccccccccc-----CCCCCCC-CCCHHHHHHHHHHHhh
Q 021486 15 GPWAPEEDEILVEYIKRNGHGSWRSLPKL----AGLLRCGKSCRLRWTNYL-----RPDIKRG-PFTEEEEKLVIQLHGI 84 (312)
Q Consensus 15 G~WT~EED~~L~~lV~kyG~~~W~~IAk~----lg~~Rs~kQCr~Rw~n~L-----~p~ikrg-~WT~EED~~Ll~lv~~ 84 (312)
++||+|||+.|+++|++||.++|..|++. +++ |++.+|++||+|++ +|.++++ +...+...+++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999985 554 99999999999998 6776665 6777777889888754
No 44
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.34 E-value=6.8e-13 Score=102.80 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHH
Q 021486 64 DIKRGPFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTH 111 (312)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~l 111 (312)
...+++||.|||++|++++.+||++|..||++|++||+.||++||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456899999999999999999999999999999999999999999866
No 45
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.34 E-value=2.3e-13 Score=113.86 Aligned_cols=84 Identities=21% Similarity=0.355 Sum_probs=61.6
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhcC
Q 021486 7 CDKKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTEEEEKLVIQLHGILG 86 (312)
Q Consensus 7 c~k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G 86 (312)
...|.+++|+||+|||++|+++|.+|| .+|..||+.|++ |++.||+.||.++|++.+..++|+.+- +......+
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~g-Rt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk 120 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPG-RTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKK 120 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTT-CCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC--
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhh
Confidence 347899999999999999999999999 589999999986 999999999999999999999987542 11112234
Q ss_pred CchHHHhhhC
Q 021486 87 NRWAAIASQL 96 (312)
Q Consensus 87 ~kWs~IA~~L 96 (312)
.+|..|++.|
T Consensus 121 ~~~~~i~k~~ 130 (131)
T 3zqc_A 121 RKAADVPKKL 130 (131)
T ss_dssp ----------
T ss_pred hhhhhcchhc
Confidence 5688888765
No 46
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.32 E-value=7.1e-13 Score=107.22 Aligned_cols=49 Identities=27% Similarity=0.432 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCC-chHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 021486 67 RGPFTEEEEKLVIQLHGILGN-RWAAIASQLPGRTDNEIKNLWNTHLKKR 115 (312)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~lLkkk 115 (312)
+++||+|||++|+++|.+||. +|..||..|||||+.||+.||.++|.+.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~ 50 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPA 50 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHccc
Confidence 589999999999999999996 8999999999999999999999988653
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.31 E-value=8.2e-13 Score=102.34 Aligned_cols=53 Identities=19% Similarity=0.385 Sum_probs=48.9
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCccccccccccccccc
Q 021486 7 CDKKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61 (312)
Q Consensus 7 c~k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L 61 (312)
+.+...++++||+|||++|+++|++|| ++|..||+.+++ |+..||+.||.++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRLP 63 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTSC
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence 356678899999999999999999999 799999999996 99999999999983
No 48
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.28 E-value=4.8e-12 Score=98.98 Aligned_cols=49 Identities=24% Similarity=0.484 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHhhcCC-chHHHhhh----CCCCCHHHHHHHHHHHHHHHH
Q 021486 68 GPFTEEEEKLVIQLHGILGN-RWAAIASQ----LPGRTDNEIKNLWNTHLKKRM 116 (312)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~----LpgRT~~qcKnRW~~lLkkkl 116 (312)
.+||.|||+.|+++|++||+ +|+.|++. |+|||+++||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999997 99999996 899999999999999998765
No 49
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.28 E-value=4.4e-12 Score=93.92 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCchHHHh---hhCCCCCHHHHHHHHHHHHHH
Q 021486 65 IKRGPFTEEEEKLVIQLHGILGNRWAAIA---SQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G~kWs~IA---~~LpgRT~~qcKnRW~~lLkk 114 (312)
-++.+||+|||+.|+++|++||.+|..|+ .++++||..++|+||+++.++
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 578999999999999999764
No 50
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.26 E-value=9.2e-12 Score=99.33 Aligned_cols=58 Identities=24% Similarity=0.470 Sum_probs=50.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcC----CchHHHhhhCCCCCHHHHHHHHHHHHHHH-HHhCCCCC
Q 021486 66 KRGPFTEEEEKLVIQLHGILG----NRWAAIASQLPGRTDNEIKNLWNTHLKKR-MLLMGLDP 123 (312)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~~lLkkk-l~~~g~~p 123 (312)
.+++||.|||++|++++.+|| ++|..||++|||||.+||++||+.++... .+..|..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp 69 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 69 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 467999999999999999996 78999999999999999999999988664 45555554
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.26 E-value=2.4e-12 Score=117.95 Aligned_cols=55 Identities=25% Similarity=0.504 Sum_probs=48.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCc------hHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 021486 63 PDIKRGPFTEEEEKLVIQLHGILGNR------WAAIASQLPGRTDNEIKNLWNTHLKKRML 117 (312)
Q Consensus 63 p~ikrg~WT~EED~~Ll~lv~~~G~k------Ws~IA~~LpgRT~~qcKnRW~~lLkkkl~ 117 (312)
+.+++++||+|||++|+++|+++|++ |..||++|||||++|||+||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 45789999999999999999999985 99999999999999999999999999865
No 52
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.90 E-value=5.8e-13 Score=105.14 Aligned_cols=54 Identities=19% Similarity=0.439 Sum_probs=50.2
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCC
Q 021486 8 DKKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRP 63 (312)
Q Consensus 8 ~k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p 63 (312)
..+.+++|+||+|||++|+++|++||. +|..||+.+++ |+..||+.||.++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 467899999999999999999999996 89999999996 9999999999999864
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.24 E-value=1.1e-11 Score=100.81 Aligned_cols=55 Identities=25% Similarity=0.403 Sum_probs=49.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCC-chHHHhhhC----CCCCHHHHHHHHHHHHHHHH
Q 021486 62 RPDIKRGPFTEEEEKLVIQLHGILGN-RWAAIASQL----PGRTDNEIKNLWNTHLKKRM 116 (312)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~L----pgRT~~qcKnRW~~lLkkkl 116 (312)
.+..++++||.|||+.|+++|++||. +|..|++.+ +|||+.+||+||+++++...
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34578899999999999999999997 999999975 89999999999999988643
No 54
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.24 E-value=1.3e-11 Score=102.78 Aligned_cols=56 Identities=25% Similarity=0.445 Sum_probs=51.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCC-chHHHhhh----CCCCCHHHHHHHHHHHHHHHH
Q 021486 61 LRPDIKRGPFTEEEEKLVIQLHGILGN-RWAAIASQ----LPGRTDNEIKNLWNTHLKKRM 116 (312)
Q Consensus 61 L~p~ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----LpgRT~~qcKnRW~~lLkkkl 116 (312)
+.+..++++||.|||+.|+++|++||+ +|+.|++. |+|||+++||+||+++++...
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 556788999999999999999999997 99999998 499999999999999998754
No 55
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.21 E-value=5.9e-11 Score=98.96 Aligned_cols=55 Identities=27% Similarity=0.473 Sum_probs=49.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCC-chHHHhhhC----CCCCHHHHHHHHHHHHHHHHH
Q 021486 63 PDIKRGPFTEEEEKLVIQLHGILGN-RWAAIASQL----PGRTDNEIKNLWNTHLKKRML 117 (312)
Q Consensus 63 p~ikrg~WT~EED~~Ll~lv~~~G~-kWs~IA~~L----pgRT~~qcKnRW~~lLkkkl~ 117 (312)
...++++||.|||+.|+++|++||. +|..|++.+ +|||+.|||+||+++++....
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~ 86 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASI 86 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence 3457899999999999999999997 999999974 899999999999999987653
No 56
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.20 E-value=2.2e-12 Score=98.59 Aligned_cols=55 Identities=11% Similarity=0.383 Sum_probs=49.5
Q ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHhCC---CCcchhchhhcCcccccccccccccccC
Q 021486 7 CDKKGLKKGPWAPEEDEILVEYIKRNGH---GSWRSLPKLAGLLRCGKSCRLRWTNYLR 62 (312)
Q Consensus 7 c~k~~lkKG~WT~EED~~L~~lV~kyG~---~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~ 62 (312)
-+++...+++||+|||++|+++|++||. .+|..||+.|++ |+.+||+.||.+++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3567889999999999999999999993 589999999996 999999999998764
No 57
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=7.9e-10 Score=81.22 Aligned_cols=48 Identities=15% Similarity=0.081 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 021486 66 KRGPFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLK 113 (312)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLk 113 (312)
..++||+||++++++++.+||.+|..||.+||+||..||+++|+...|
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999987644
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.98 E-value=7.7e-10 Score=88.17 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=61.1
Q ss_pred cccccccccccccCCCCCCCCCCHHHHHHHHHHHhhcCCchHHHhhhC-----CCCCHHHHHHHHHHHHHHHHHhCC
Q 021486 49 CGKSCRLRWTNYLRPDIKRGPFTEEEEKLVIQLHGILGNRWAAIASQL-----PGRTDNEIKNLWNTHLKKRMLLMG 120 (312)
Q Consensus 49 s~kQCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~L-----pgRT~~qcKnRW~~lLkkkl~~~g 120 (312)
-+.=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..++|+||+.+.++-+...+
T Consensus 16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345578899999976 89999999999999999999999999999 589999999999999998877653
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.96 E-value=7e-10 Score=84.45 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=49.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcC----CchHHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCC
Q 021486 64 DIKRGPFTEEEEKLVIQLHGILG----NRWAAIASQLPGRTDNEIKNLWNTHLKKRMLLMGLD 122 (312)
Q Consensus 64 ~ikrg~WT~EED~~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~~lLkkkl~~~g~~ 122 (312)
..+.+.||.||+++|.+++.+|+ ++|..||.+| |||..||++||+.+.+...+..|..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~v 66 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGMV 66 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCCC
Confidence 45678999999999999999997 6899999998 9999999999999976644334433
No 60
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.87 E-value=3.5e-10 Score=90.17 Aligned_cols=48 Identities=10% Similarity=0.321 Sum_probs=43.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhC---CCCcchhchhhcCccccccccccccccc
Q 021486 13 KKGPWAPEEDEILVEYIKRNG---HGSWRSLPKLAGLLRCGKSCRLRWTNYL 61 (312)
Q Consensus 13 kKG~WT~EED~~L~~lV~kyG---~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L 61 (312)
-+++||+|||++|.+++.+|| .+.|..||+.+++ |+.+||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 368999999999999999997 4579999999996 99999999999864
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.75 E-value=7.1e-09 Score=94.38 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 66 KRGPFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
..++||+||++++++++.+||++|..||+.+++||..|||++|+.+.++
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999988765
No 62
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.69 E-value=4.1e-09 Score=78.03 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=43.9
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCcchhch---hhcCcccccccccccccccC
Q 021486 11 GLKKGPWAPEEDEILVEYIKRNGHGSWRSLPK---LAGLLRCGKSCRLRWTNYLR 62 (312)
Q Consensus 11 ~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk---~lg~~Rs~kQCr~Rw~n~L~ 62 (312)
.-++++||+|||+.|++.|++||. +|..|+. .+. .|+...+++||++...
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 347899999999999999999997 9999994 444 4999999999998764
No 63
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.1e-08 Score=75.09 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=46.0
Q ss_pred CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCccccccccccccccc
Q 021486 8 DKKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61 (312)
Q Consensus 8 ~k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L 61 (312)
++..-..++||+||++++++++.+|| .+|..||+.++. |+..||+.+|....
T Consensus 6 ~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~-rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 6 SGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLER-KSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTT-SCHHHHHHHHHHHT
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence 44556779999999999999999999 599999999996 99999999997653
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.49 E-value=1.2e-07 Score=72.39 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHhhcC----CchHHHhhhCCCCCHHHHHHHHHHHH
Q 021486 67 RGPFTEEEEKLVIQLHGILG----NRWAAIASQLPGRTDNEIKNLWNTHL 112 (312)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G----~kWs~IA~~LpgRT~~qcKnRW~~lL 112 (312)
...||.+|+++|.++...|+ .+|..||..+||||..+|+.||..++
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46899999999999999998 47999999999999999999999874
No 65
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.49 E-value=2.7e-08 Score=75.68 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=44.8
Q ss_pred CCCCcCCCCHHHHHHHHHHHHHhCC---CCcchhchhhcCcccccccccccccccC
Q 021486 10 KGLKKGPWAPEEDEILVEYIKRNGH---GSWRSLPKLAGLLRCGKSCRLRWTNYLR 62 (312)
Q Consensus 10 ~~lkKG~WT~EED~~L~~lV~kyG~---~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~ 62 (312)
.+.+.+.||.|||++|.+++.+|+. +.|..||+.+| |+..+|+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 3567889999999999999999973 57999999995 999999999987654
No 66
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.43 E-value=1.3e-07 Score=94.58 Aligned_cols=46 Identities=22% Similarity=0.342 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHH
Q 021486 68 GPFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLK 113 (312)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLk 113 (312)
..||.||-.++++++.+||..|..||..+++||..|||++|..+.+
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR 426 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999976543
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.38 E-value=3.5e-07 Score=66.90 Aligned_cols=47 Identities=23% Similarity=0.440 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHhhc--------CCc-hHHHhh-hCCCCCHHHHHHHHHHHHH
Q 021486 67 RGPFTEEEEKLVIQLHGIL--------GNR-WAAIAS-QLPGRTDNEIKNLWNTHLK 113 (312)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~--------G~k-Ws~IA~-~LpgRT~~qcKnRW~~lLk 113 (312)
|.+||.|||..|++.|.++ |++ |..+++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 554 999999 8999999999999998764
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.34 E-value=8.4e-08 Score=70.20 Aligned_cols=48 Identities=23% Similarity=0.457 Sum_probs=42.7
Q ss_pred cCCCCHHHHHHHHHHHHHh--------CCCCcchhch-hhcCcccccccccccccccC
Q 021486 14 KGPWAPEEDEILVEYIKRN--------GHGSWRSLPK-LAGLLRCGKSCRLRWTNYLR 62 (312)
Q Consensus 14 KG~WT~EED~~L~~lV~ky--------G~~~W~~IAk-~lg~~Rs~kQCr~Rw~n~L~ 62 (312)
+.+||+|||+.|+++|.+| |..-|..+++ .++. ++..+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 5689999999999999999 5556999999 6775 999999999999875
No 69
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=4.2e-06 Score=61.71 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=45.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCchHHHhh-hCCCCCHHHHHHHHHHH
Q 021486 62 RPDIKRGPFTEEEEKLVIQLHGILGNRWAAIAS-QLPGRTDNEIKNLWNTH 111 (312)
Q Consensus 62 ~p~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~-~LpgRT~~qcKnRW~~l 111 (312)
.|.++...||+||-++..+.+.+||.+|..|++ .|++||..||...|+..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 367788999999999999999999999999999 58999999999998755
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.16 E-value=5e-07 Score=68.92 Aligned_cols=48 Identities=19% Similarity=0.366 Sum_probs=43.2
Q ss_pred cCCCCHHHHHHHHHHHHHhCC---CCcchhchhhcCcccccccccccccccC
Q 021486 14 KGPWAPEEDEILVEYIKRNGH---GSWRSLPKLAGLLRCGKSCRLRWTNYLR 62 (312)
Q Consensus 14 KG~WT~EED~~L~~lV~kyG~---~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~ 62 (312)
...||.+|+++|..++..|+. +.|..||..+|+ |+..+|+.||..++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 468999999999999999975 479999999997 999999999988754
No 71
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.16 E-value=7.3e-07 Score=81.19 Aligned_cols=50 Identities=20% Similarity=0.401 Sum_probs=45.4
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccC
Q 021486 11 GLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLR 62 (312)
Q Consensus 11 ~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~ 62 (312)
....++||+||++++++++.+|| ++|..||+.++. |+..||+.+|.++.+
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34578999999999999999999 599999999996 999999999998764
No 72
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.14 E-value=2.7e-06 Score=67.20 Aligned_cols=50 Identities=16% Similarity=0.281 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHhhcCC---chHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 021486 68 GPFTEEEEKLVIQLHGILGN---RWAAIASQLPGRTDNEIKNLWNTHLKKRML 117 (312)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~---kWs~IA~~LpgRT~~qcKnRW~~lLkkkl~ 117 (312)
-.||.|||..||...++-|. .|..||+.|.+|+.+||++||+.+++---.
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 36999999999999999996 799999999999999999999999876443
No 73
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.23 E-value=9.2e-07 Score=66.38 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHhhcCC---chHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 69 PFTEEEEKLVIQLHGILGN---RWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
.||.|||..|+..+++-|. .|..||..| +|+++||++||..+++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999997 799999999 99999999999998753
No 74
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.95 E-value=1.1e-05 Score=76.40 Aligned_cols=100 Identities=17% Similarity=0.224 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhchhhcCccccccccc-------ccccc---------------------------
Q 021486 15 GPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRL-------RWTNY--------------------------- 60 (312)
Q Consensus 15 G~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~-------Rw~n~--------------------------- 60 (312)
+.||..+...++.++.+||..+|..||..+++ ++...++. ||..+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999975 77766643 22110
Q ss_pred -------------c---CCCCCCCCCCHHHHHHHHHHHhhcCC----chHHHhh------------hCCCCCHHHHHHHH
Q 021486 61 -------------L---RPDIKRGPFTEEEEKLVIQLHGILGN----RWAAIAS------------QLPGRTDNEIKNLW 108 (312)
Q Consensus 61 -------------L---~p~ikrg~WT~EED~~Ll~lv~~~G~----kWs~IA~------------~LpgRT~~qcKnRW 108 (312)
| -+..+...||++||..|+-++.+||- .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 02234568999999999999999994 6999962 45679999999999
Q ss_pred HHHHHHH
Q 021486 109 NTHLKKR 115 (312)
Q Consensus 109 ~~lLkkk 115 (312)
+++++-.
T Consensus 270 ~tLi~~i 276 (304)
T 1ofc_X 270 NTLITLI 276 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999754
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.94 E-value=2.1e-05 Score=62.52 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=52.5
Q ss_pred cccccccCCCCCCCCCCHHHHHHHHHHHhhcCCchHHHhhhCC-----CCCHHHHHHHHHHHHHHHHHhC
Q 021486 55 LRWTNYLRPDIKRGPFTEEEEKLVIQLHGILGNRWAAIASQLP-----GRTDNEIKNLWNTHLKKRMLLM 119 (312)
Q Consensus 55 ~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G~kWs~IA~~Lp-----gRT~~qcKnRW~~lLkkkl~~~ 119 (312)
+-|..+|. ...||.||...|++|+++|+-+|..|+.... +||-.++|.||+.+.++-+...
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34555664 3689999999999999999999999999974 7999999999999998877654
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.93 E-value=2e-06 Score=65.49 Aligned_cols=43 Identities=23% Similarity=0.401 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCC----chHHHhhhCCCCCHHHHHHHHH
Q 021486 67 RGPFTEEEEKLVIQLHGILGN----RWAAIASQLPGRTDNEIKNLWN 109 (312)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~----kWs~IA~~LpgRT~~qcKnRW~ 109 (312)
...||.+|+++|.++..+|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999884
No 77
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.66 E-value=8.9e-05 Score=55.71 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCchHHHhh-hCCCCCHHHHHHHHHHH
Q 021486 67 RGPFTEEEEKLVIQLHGILGNRWAAIAS-QLPGRTDNEIKNLWNTH 111 (312)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~kWs~IA~-~LpgRT~~qcKnRW~~l 111 (312)
...||+||-++..+.+.+||.+|..|++ .||+||..+|...|+..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW 53 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 4689999999999999999999999999 59999999999999843
No 78
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.65 E-value=7e-05 Score=59.41 Aligned_cols=46 Identities=17% Similarity=0.082 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHH
Q 021486 67 RGPFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHL 112 (312)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lL 112 (312)
...||+||.++..+.+..||.+|..|+..||+||..+|...|+..-
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK 88 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence 4689999999999999999999999999999999999999987653
No 79
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.63 E-value=1.2e-05 Score=61.18 Aligned_cols=44 Identities=11% Similarity=0.295 Sum_probs=38.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCC---CcchhchhhcCcccccccccccc
Q 021486 14 KGPWAPEEDEILVEYIKRNGHG---SWRSLPKLAGLLRCGKSCRLRWT 58 (312)
Q Consensus 14 KG~WT~EED~~L~~lV~kyG~~---~W~~IAk~lg~~Rs~kQCr~Rw~ 58 (312)
.+.||.||+++|..++.+|+.. .|.+||+.+|+ |+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4689999999999999999753 79999999997 99999999985
No 80
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=4.8e-05 Score=55.94 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=44.3
Q ss_pred CCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhch-hhcCcccccccccccccc
Q 021486 9 KKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPK-LAGLLRCGKSCRLRWTNY 60 (312)
Q Consensus 9 k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk-~lg~~Rs~kQCr~Rw~n~ 60 (312)
.|.++...||+||-++..+++.+||. +|..|++ .++. |+..||..-|...
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPN-KETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTT-SCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CcHHHHHHHHhcc
Confidence 57888999999999999999999995 9999998 5885 9999998877544
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.28 E-value=9.8e-05 Score=73.86 Aligned_cols=47 Identities=19% Similarity=0.416 Sum_probs=43.0
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccc
Q 021486 12 LKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNY 60 (312)
Q Consensus 12 lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~ 60 (312)
....+||.||.+++++++.+|| .+|..|++.+|. |+..||+..|.++
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgT-KT~~Qvk~fy~~~ 424 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGN-KSVVQVKNFFVNY 424 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSS-CCHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 4568999999999999999999 599999999996 9999999998765
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.21 E-value=0.00032 Score=54.02 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHhhcC----------CchHHHhhhCC----CCCHHHHHHHHHHHHHHH
Q 021486 67 RGPFTEEEEKLVIQLHGILG----------NRWAAIASQLP----GRTDNEIKNLWNTHLKKR 115 (312)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G----------~kWs~IA~~Lp----gRT~~qcKnRW~~lLkkk 115 (312)
...||.+|-..||+++..+. ..|..||..|. .||+.||+++|.++.+.-
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 46899999999999987632 14999999973 699999999999887763
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.04 E-value=0.00019 Score=57.00 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=42.0
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhc----Cccccccccccccccc
Q 021486 12 LKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAG----LLRCGKSCRLRWTNYL 61 (312)
Q Consensus 12 lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg----~~Rs~kQCr~Rw~n~L 61 (312)
++..+||.||+..|++++++|+. .|..|+..+. ..|+..+++.||..+.
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999995 9999998873 2399999999998654
No 84
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.68 E-value=0.003 Score=61.38 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=77.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhchhhcCccccccccc-------ccccc---------------------------
Q 021486 15 GPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRL-------RWTNY--------------------------- 60 (312)
Q Consensus 15 G~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~-------Rw~n~--------------------------- 60 (312)
+-||.-+=..++.++.+||..+-..||..++.+++...++. ||..+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999889999998862266655542 22110
Q ss_pred -------------c----CCC-CCCCCCCHHHHHHHHHHHhhcC----CchHHHhhh------------CCCCCHHHHHH
Q 021486 61 -------------L----RPD-IKRGPFTEEEEKLVIQLHGILG----NRWAAIASQ------------LPGRTDNEIKN 106 (312)
Q Consensus 61 -------------L----~p~-ikrg~WT~EED~~Ll~lv~~~G----~kWs~IA~~------------LpgRT~~qcKn 106 (312)
| .+. .+...||++||..||-++.+|| +.|..|-.. +..||+.+|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 011 1355799999999999999999 469999544 45799999999
Q ss_pred HHHHHHHHHHHh
Q 021486 107 LWNTHLKKRMLL 118 (312)
Q Consensus 107 RW~~lLkkkl~~ 118 (312)
|.+++++-..+.
T Consensus 284 Rc~tLi~~IeKE 295 (374)
T 2y9y_A 284 RGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999765443
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.56 E-value=0.00073 Score=50.65 Aligned_cols=46 Identities=11% Similarity=0.238 Sum_probs=40.3
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcchhch-hhcCcccccccccccccc
Q 021486 13 KKGPWAPEEDEILVEYIKRNGHGSWRSLPK-LAGLLRCGKSCRLRWTNY 60 (312)
Q Consensus 13 kKG~WT~EED~~L~~lV~kyG~~~W~~IAk-~lg~~Rs~kQCr~Rw~n~ 60 (312)
....||+||-++..+++.+||. +|..|++ .++. |+..+|..-|...
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY~w 53 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYYMW 53 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CCHHHHHHHHHhh
Confidence 4568999999999999999995 9999999 5885 9999999877644
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.50 E-value=0.00084 Score=53.13 Aligned_cols=45 Identities=13% Similarity=0.234 Sum_probs=40.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccc
Q 021486 14 KGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNY 60 (312)
Q Consensus 14 KG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~ 60 (312)
...||+||.++..+....|| .+|..|++.++. |+..+|...|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~-Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLER-KTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTT-CCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCC-CCHHHHHHHHhcc
Confidence 46799999999999999999 599999999986 9999999877543
No 87
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.44 E-value=0.00049 Score=51.64 Aligned_cols=48 Identities=10% Similarity=0.257 Sum_probs=41.0
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC--CCcchhchhhcCcccccccccccccccC
Q 021486 13 KKGPWAPEEDEILVEYIKRNGH--GSWRSLPKLAGLLRCGKSCRLRWTNYLR 62 (312)
Q Consensus 13 kKG~WT~EED~~L~~lV~kyG~--~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~ 62 (312)
+--.||.|||..|+..+++.|. .-|..||+.++ |++.|+..||+..+.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLMK 62 (70)
Confidence 3446999999999999999885 36999999994 999999999987543
No 88
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.27 E-value=0.0016 Score=51.40 Aligned_cols=45 Identities=13% Similarity=0.327 Sum_probs=39.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCC--CCcchhchhhcCccccccccccccc
Q 021486 14 KGPWAPEEDEILVEYIKRNGH--GSWRSLPKLAGLLRCGKSCRLRWTN 59 (312)
Q Consensus 14 KG~WT~EED~~L~~lV~kyG~--~~W~~IAk~lg~~Rs~kQCr~Rw~n 59 (312)
---||.|||..|+...++.|. .-|..||+.+++ |++.|+.+||+.
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~ 79 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRE 79 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHH
Confidence 346999999999999999875 369999999986 999999999975
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.17 E-value=0.00056 Score=52.65 Aligned_cols=49 Identities=20% Similarity=0.525 Sum_probs=39.1
Q ss_pred CcCCCCHHHHHHHHHHHHHhCC---------CCcchhchhh---cCccccccccccccccc
Q 021486 13 KKGPWAPEEDEILVEYIKRNGH---------GSWRSLPKLA---GLLRCGKSCRLRWTNYL 61 (312)
Q Consensus 13 kKG~WT~EED~~L~~lV~kyG~---------~~W~~IAk~l---g~~Rs~kQCr~Rw~n~L 61 (312)
+...||.+|-..|+++...+.. .-|..||..| |..|++.||+.+|.|+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999875321 1599999764 45699999999998864
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.39 E-value=0.013 Score=51.47 Aligned_cols=39 Identities=31% Similarity=0.516 Sum_probs=33.3
Q ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcchhch
Q 021486 4 TPCCDKKGLKKGPWAPEEDEILVEYIKRNGHGSWRSLPK 42 (312)
Q Consensus 4 ~pcc~k~~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk 42 (312)
-|++.++.-....||.+||..|+-.|.+||.++|..|-.
T Consensus 124 i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 124 IPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 356666666677899999999999999999999999875
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.77 E-value=0.16 Score=37.53 Aligned_cols=48 Identities=15% Similarity=0.052 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCc---hHHHhhhC--CCCCHHHHHHHHHHHH
Q 021486 65 IKRGPFTEEEEKLVIQLHGILGNR---WAAIASQL--PGRTDNEIKNLWNTHL 112 (312)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G~k---Ws~IA~~L--pgRT~~qcKnRW~~lL 112 (312)
..+-.||+|..+..++++.++|.. +..|-+.| +|.|..+|+.|.+.+.
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR 57 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR 57 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 356689999999999999999954 78998886 6899999999877653
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=92.90 E-value=0.04 Score=43.62 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=40.1
Q ss_pred CCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhc----Cccccccccccccccc
Q 021486 12 LKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAG----LLRCGKSCRLRWTNYL 61 (312)
Q Consensus 12 lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg----~~Rs~kQCr~Rw~n~L 61 (312)
++...||.||...|++++++|.. .|..|+.... ..|+.-+.++||..+.
T Consensus 28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999995 9999997653 1388888888887653
No 93
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.65 E-value=0.18 Score=47.60 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCC-chHHHhhhCCCCCHHHHHHHHHHHHH
Q 021486 67 RGPFTEEEEKLVIQLHGILGN-RWAAIASQLPGRTDNEIKNLWNTHLK 113 (312)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~-kWs~IA~~LpgRT~~qcKnRW~~lLk 113 (312)
.+.||..+....+.++.+||. .|..||..|+|+|..+|+.++.....
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 457999999999999999995 79999999999999999776655544
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.21 E-value=0.24 Score=43.34 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC---CchHHHhhh--CCCCCHHHHHHHHHHHHHHHH
Q 021486 65 IKRGPFTEEEEKLVIQLHGILG---NRWAAIASQ--LPGRTDNEIKNLWNTHLKKRM 116 (312)
Q Consensus 65 ikrg~WT~EED~~Ll~lv~~~G---~kWs~IA~~--LpgRT~~qcKnRW~~lLkkkl 116 (312)
-....||..|-..|+..+.+|| .+|..|+.. |.++|..+|+..+..++..-.
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~ 61 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCI 61 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 3557899999999999999999 579999865 789999999998887776543
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.47 E-value=0.23 Score=46.17 Aligned_cols=28 Identities=36% Similarity=0.680 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhch
Q 021486 15 GPWAPEEDEILVEYIKRNGHGSWRSLPK 42 (312)
Q Consensus 15 G~WT~EED~~L~~lV~kyG~~~W~~IAk 42 (312)
..|+.+||..|+..|-+||.++|.+|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999999999974
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=81.47 E-value=0.88 Score=33.48 Aligned_cols=47 Identities=9% Similarity=0.090 Sum_probs=33.7
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCC---cchhchhhcC-cccccccccccc
Q 021486 11 GLKKGPWAPEEDEILVEYIKRNGHGS---WRSLPKLAGL-LRCGKSCRLRWT 58 (312)
Q Consensus 11 ~lkKG~WT~EED~~L~~lV~kyG~~~---W~~IAk~lg~-~Rs~kQCr~Rw~ 58 (312)
...+-.||+|..++.+++|++.|. + +..|.+.|+- +.+..++.-+.+
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQ 54 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQ 54 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHH
Confidence 345778999999999999999994 4 5677777662 245555554433
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=75.74 E-value=5.7 Score=36.72 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHhhcC---CchHHHhhh--CCCCCHHHHHHHHHHHHHH
Q 021486 67 RGPFTEEEEKLVIQLHGILG---NRWAAIASQ--LPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G---~kWs~IA~~--LpgRT~~qcKnRW~~lLkk 114 (312)
+++||+.|-..|+..+.+|| .+|..|+.. |+.++...++.-++.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 589999765 6899999999888877654
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=63.59 E-value=14 Score=25.40 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 73 EEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 73 EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
+.+..++.++-..|-.+.+||..| |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455566667667889999999999 88999999887766554
No 99
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=60.40 E-value=55 Score=25.18 Aligned_cols=87 Identities=16% Similarity=0.128 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhchhhcCccccccccc---cccccc--CCCCCCCCCCHHHHHHHHHHHhhcCCch
Q 021486 15 GPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRL---RWTNYL--RPDIKRGPFTEEEEKLVIQLHGILGNRW 89 (312)
Q Consensus 15 G~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~---Rw~n~L--~p~ikrg~WT~EED~~Ll~lv~~~G~kW 89 (312)
...|.++-..++.++. .|. .-..||+.+| .+...++. +|..+- ...-.....+.+++..|+++...-+-.-
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lg--is~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~ 80 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKIS--RSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTA 80 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCH
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCH
Confidence 3578888888887774 463 6789999998 44444432 222221 1111223578888888888733322345
Q ss_pred HHHhhhCCC--CCHHHHHH
Q 021486 90 AAIASQLPG--RTDNEIKN 106 (312)
Q Consensus 90 s~IA~~Lpg--RT~~qcKn 106 (312)
.+|+..| | -+...|..
T Consensus 81 ~~i~~~l-g~~~s~~tV~r 98 (141)
T 1u78_A 81 RDIRNEL-QLSASKRTILN 98 (141)
T ss_dssp HHHHHHT-TCCSCHHHHHH
T ss_pred HHHHHHH-CCCccHHHHHH
Confidence 6788887 4 45554544
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=59.87 E-value=13 Score=26.27 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=30.4
Q ss_pred HHHHHHHHHhh----cCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 021486 74 EEKLVIQLHGI----LGNRWAAIASQLPGRTDNEIKNLWNTHLKKR 115 (312)
Q Consensus 74 ED~~Ll~lv~~----~G~kWs~IA~~LpgRT~~qcKnRW~~lLkkk 115 (312)
.+..++.+.-. .|-.|.+||..| |-+...|+.+....+++-
T Consensus 14 ~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 14 REAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34445555544 578899999999 999999999877766543
No 101
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=56.99 E-value=7.7 Score=30.99 Aligned_cols=38 Identities=16% Similarity=0.334 Sum_probs=30.3
Q ss_pred HHHHHHhhcC--------CchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 77 LVIQLHGILG--------NRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 77 ~Ll~lv~~~G--------~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
.|..+|.++| +.|..|+..|.--....+|..|..+|-+
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 4777788877 3699999998444488999999998855
No 102
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=55.96 E-value=19 Score=25.00 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=30.2
Q ss_pred HHHHHHHHHh----hcCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 74 EEKLVIQLHG----ILGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 74 ED~~Ll~lv~----~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
.+..++.+.- ..|-.+.+||..| |-+...|+.+....+++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3444555544 3578899999999 99999999988777654
No 103
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=55.61 E-value=19 Score=27.97 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=29.2
Q ss_pred HHHHHHHhhcC--------CchHHHhhhCCCCC----HHHHHHHHHHHHHH
Q 021486 76 KLVIQLHGILG--------NRWAAIASQLPGRT----DNEIKNLWNTHLKK 114 (312)
Q Consensus 76 ~~Ll~lv~~~G--------~kWs~IA~~LpgRT----~~qcKnRW~~lLkk 114 (312)
-.|..+|.+.| +.|..|+..|.--. ..++|..|..+|-+
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 35677777777 36999999993322 57889999988865
No 104
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=54.77 E-value=9.7 Score=32.90 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=22.0
Q ss_pred CCCCcCCCCHHHHHHHH--------HHHHHhCCCCcchhc
Q 021486 10 KGLKKGPWAPEEDEILV--------EYIKRNGHGSWRSLP 41 (312)
Q Consensus 10 ~~lkKG~WT~EED~~L~--------~lV~kyG~~~W~~IA 41 (312)
|.-..|-||+|+|+.|. .+++||| |..|.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie 146 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRME 146 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHH
Confidence 34568999999999985 6788887 44444
No 105
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=52.77 E-value=18 Score=28.90 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=29.5
Q ss_pred HHHHHHHhhcC--------CchHHHhhhCCCCC----HHHHHHHHHHHHHH
Q 021486 76 KLVIQLHGILG--------NRWAAIASQLPGRT----DNEIKNLWNTHLKK 114 (312)
Q Consensus 76 ~~Ll~lv~~~G--------~kWs~IA~~LpgRT----~~qcKnRW~~lLkk 114 (312)
-+|..+|.++| +.|..|+..|.--. ..++|..|..+|-.
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 35777788887 36999999983322 57889999988865
No 106
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=51.05 E-value=16 Score=29.62 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=32.0
Q ss_pred HHHHHHhhcCC--------chHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 021486 77 LVIQLHGILGN--------RWAAIASQLPGRTDNEIKNLWNTHLKKRML 117 (312)
Q Consensus 77 ~Ll~lv~~~G~--------kWs~IA~~LpgRT~~qcKnRW~~lLkkkl~ 117 (312)
+|..+|.+.|+ .|..|+..|.--....+|..|..+|-+--.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 47777777773 599999998444499999999999977443
No 107
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=50.30 E-value=22 Score=28.62 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=29.8
Q ss_pred HHHHHHHhhcC--------CchHHHhhhCCCCC----HHHHHHHHHHHHHH
Q 021486 76 KLVIQLHGILG--------NRWAAIASQLPGRT----DNEIKNLWNTHLKK 114 (312)
Q Consensus 76 ~~Ll~lv~~~G--------~kWs~IA~~LpgRT----~~qcKnRW~~lLkk 114 (312)
-+|..+|.++| +.|.+|+..|.--+ ..++|..|..+|-.
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 35777777777 36999999993322 56899999999876
No 108
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=50.12 E-value=26 Score=33.82 Aligned_cols=45 Identities=24% Similarity=0.317 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCC-chHHHhhhCC-CCCHHHHHHHHHHH
Q 021486 67 RGPFTEEEEKLVIQLHGILGN-RWAAIASQLP-GRTDNEIKNLWNTH 111 (312)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~-kWs~IA~~Lp-gRT~~qcKnRW~~l 111 (312)
.+.||.-+=..++.+..+||. .-..||..|. |+|..+|+.+....
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vF 169 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAF 169 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 357999899999999999995 5999999997 99999999554433
No 109
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=48.45 E-value=30 Score=25.47 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 73 EEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 73 EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
+.+..++.++-..|-.-.+||..| |-+...|+.+....+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 345566667667788899999999 99999999887765544
No 110
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=48.36 E-value=24 Score=28.33 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=28.8
Q ss_pred HHHHHHhhcC--------CchHHHhhhCCCCC----HHHHHHHHHHHHHH
Q 021486 77 LVIQLHGILG--------NRWAAIASQLPGRT----DNEIKNLWNTHLKK 114 (312)
Q Consensus 77 ~Ll~lv~~~G--------~kWs~IA~~LpgRT----~~qcKnRW~~lLkk 114 (312)
+|..+|.++| +.|..|+..|.-.. ...+|..|..+|-.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 5777777777 36999999993321 46889999998866
No 111
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=46.11 E-value=5.2 Score=32.59 Aligned_cols=45 Identities=13% Similarity=0.254 Sum_probs=32.4
Q ss_pred CcchhchhhcCcccc----cccccccccccCCCCCCCCCCHHHHHHHHHHHh
Q 021486 36 SWRSLPKLAGLLRCG----KSCRLRWTNYLRPDIKRGPFTEEEEKLVIQLHG 83 (312)
Q Consensus 36 ~W~~IAk~lg~~Rs~----kQCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~ 83 (312)
.|..|+..++...+. ...+..|.++|.|- ..++++|-..|.+-|.
T Consensus 65 ~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 65 KWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp CHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 799999999864332 35677888888762 2377888888876653
No 112
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=44.56 E-value=51 Score=23.00 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 70 FTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 70 WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
+|+.|-+ ++.++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 17 L~~~e~~-vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQ-VLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHH-HHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHH-HHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3444544 44455 6688899999999 88999999887766544
No 113
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=43.04 E-value=5.5 Score=31.87 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=29.2
Q ss_pred HHHHHHHHhCC-------CCcchhchhhcCcccccccccccccccCC
Q 021486 24 ILVEYIKRNGH-------GSWRSLPKLAGLLRCGKSCRLRWTNYLRP 63 (312)
Q Consensus 24 ~L~~lV~kyG~-------~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p 63 (312)
+|..+|.+.|- +.|..|+..+|. -.+...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTS-CCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 56677777652 379999999997 3377788888888764
No 114
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=41.68 E-value=28 Score=28.18 Aligned_cols=79 Identities=18% Similarity=0.351 Sum_probs=51.7
Q ss_pred CCcCCCCHHHH--HHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhhcC---
Q 021486 12 LKKGPWAPEED--EILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTEEEEKLVIQLHGILG--- 86 (312)
Q Consensus 12 lkKG~WT~EED--~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~~G--- 86 (312)
.=+.+|.+.+. +.|..+.++.|. ....++..-| | .| +--+|..+|.++|
T Consensus 5 ~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~i~g--k-----------~l------------DL~~Ly~~V~~~GG~~ 58 (121)
T 2rq5_A 5 SLGRRWGPNVQRLACIKKHLRSQGI-TMDELPLIGG--C-----------EL------------DLACFFRLINEMGGMQ 58 (121)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCEETT--E-----------EC------------CHHHHHHHHHHTTSHH
T ss_pred HhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCcCCC--E-----------ec------------cHHHHHHHHHHcCcHH
Confidence 33567988775 457777778785 5555554332 1 11 1235778888888
Q ss_pred -----CchHHHhhhC--CCC---CHHHHHHHHHHHHHHHH
Q 021486 87 -----NRWAAIASQL--PGR---TDNEIKNLWNTHLKKRM 116 (312)
Q Consensus 87 -----~kWs~IA~~L--pgR---T~~qcKnRW~~lLkkkl 116 (312)
+.|..|+..| |.- ....+|+.|..+|-+--
T Consensus 59 ~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE 98 (121)
T 2rq5_A 59 QVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD 98 (121)
T ss_dssp HHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH
T ss_pred HhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH
Confidence 4699999999 321 25688999988886643
No 115
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=40.37 E-value=33 Score=28.44 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=29.6
Q ss_pred HHHHHHHhhcC--------CchHHHhhhCC--CC---CHHHHHHHHHHHHHH
Q 021486 76 KLVIQLHGILG--------NRWAAIASQLP--GR---TDNEIKNLWNTHLKK 114 (312)
Q Consensus 76 ~~Ll~lv~~~G--------~kWs~IA~~Lp--gR---T~~qcKnRW~~lLkk 114 (312)
-+|..+|.+.| +.|..|+..|. .. ...++|..|..+|-.
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~ 118 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYP 118 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHH
Confidence 35777788887 36999999983 22 257899999998866
No 116
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=39.72 E-value=15 Score=28.03 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=27.4
Q ss_pred HHHHHHhhcC--------CchHHHhhhCCCC----CHHHHHHHHHHHHHH
Q 021486 77 LVIQLHGILG--------NRWAAIASQLPGR----TDNEIKNLWNTHLKK 114 (312)
Q Consensus 77 ~Ll~lv~~~G--------~kWs~IA~~LpgR----T~~qcKnRW~~lLkk 114 (312)
.|..+|.+.| +.|.+|+..|.-- ...++|+.|..+|-.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 4667777776 4699999998321 256888888887754
No 117
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=39.64 E-value=61 Score=24.20 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 66 KRGPFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 66 krg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
.....|+.|-+.|.-++ .|..-.+||..| |-+...|+.+...++++
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34567888877666554 788899999999 99999999988777554
No 118
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=39.31 E-value=94 Score=24.44 Aligned_cols=79 Identities=11% Similarity=0.042 Sum_probs=47.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCccccccccc---cccc--ccCCCCC----CCCCCHHHHHHHHHHHhh
Q 021486 14 KGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRL---RWTN--YLRPDIK----RGPFTEEEEKLVIQLHGI 84 (312)
Q Consensus 14 KG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~---Rw~n--~L~p~ik----rg~WT~EED~~Ll~lv~~ 84 (312)
....|.++-..++.++. .|. ....||+.+| .+...++. ||.. .+.+... ....+.++.+.|++++.+
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lg--is~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 105 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGV-RPCDISRQLR--VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQ 105 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTC-CHHHHHHHHT--CCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCC-CHHHHHHHHC--cCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 45789998888888884 563 6789999998 44444332 2221 1223222 234788888888888876
Q ss_pred cC-CchHHHhhhC
Q 021486 85 LG-NRWAAIASQL 96 (312)
Q Consensus 85 ~G-~kWs~IA~~L 96 (312)
.+ -.-.+|+..|
T Consensus 106 ~~~~s~~~i~~~l 118 (149)
T 1k78_A 106 NPTMFAWEIRDRL 118 (149)
T ss_dssp CTTCCHHHHHHHH
T ss_pred CcchhHHHHHHHH
Confidence 43 2233455444
No 119
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=38.54 E-value=44 Score=26.86 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=30.0
Q ss_pred HHHHHHHhhcC--------CchHHHhhhCC--CC---CHHHHHHHHHHHHHH
Q 021486 76 KLVIQLHGILG--------NRWAAIASQLP--GR---TDNEIKNLWNTHLKK 114 (312)
Q Consensus 76 ~~Ll~lv~~~G--------~kWs~IA~~Lp--gR---T~~qcKnRW~~lLkk 114 (312)
-.|..+|.++| +.|..|+..|. .. ...++|..|..+|-+
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 45777788887 46999999983 22 267899999999876
No 120
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=38.27 E-value=8.6 Score=30.13 Aligned_cols=41 Identities=12% Similarity=0.244 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCC-------CCcchhchhhcCcc----cccccccccccccCC
Q 021486 23 EILVEYIKRNGH-------GSWRSLPKLAGLLR----CGKSCRLRWTNYLRP 63 (312)
Q Consensus 23 ~~L~~lV~kyG~-------~~W~~IAk~lg~~R----s~kQCr~Rw~n~L~p 63 (312)
-+|..+|.+.|- +.|..|+..+|... .+.+.+..|.++|.|
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 356666766652 37999999998633 235677788888875
No 121
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=37.84 E-value=48 Score=26.85 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=24.5
Q ss_pred cCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 85 LGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 85 ~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
.|-...+||..| |-+...|+++....+++
T Consensus 155 ~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467899999999 99999999988776655
No 122
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=36.97 E-value=48 Score=24.24 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=29.5
Q ss_pred HHHHHHHHHhh----cCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 74 EEKLVIQLHGI----LGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 74 ED~~Ll~lv~~----~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
.+..++.+.-. .|-.+.+||..| |-+...|+.+-...+++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34445555444 567899999999 99999999877666544
No 123
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=36.89 E-value=61 Score=22.14 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 68 GPFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 68 g~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
..+|+.|-+.|.. + ..|..-.+||..| |-+...|+.+....+++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3567777666555 4 5677899999999 88999999887766543
No 124
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=36.82 E-value=20 Score=27.92 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=28.9
Q ss_pred HHHHHHHhhcC--------CchHHHhhhCCC--C---CHHHHHHHHHHHHHH
Q 021486 76 KLVIQLHGILG--------NRWAAIASQLPG--R---TDNEIKNLWNTHLKK 114 (312)
Q Consensus 76 ~~Ll~lv~~~G--------~kWs~IA~~Lpg--R---T~~qcKnRW~~lLkk 114 (312)
-.|..+|.++| +.|..|+..|.- . ...++|..|..+|-.
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 35777777777 469999999832 1 246899999988855
No 125
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=36.52 E-value=58 Score=23.56 Aligned_cols=43 Identities=26% Similarity=0.216 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 69 PFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
..|+.|-+.|.. + ..|-.-.+||..| |-+...|+.+....+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666655554 4 5788899999999 89999999887766544
No 126
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=36.06 E-value=60 Score=24.20 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 69 PFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
..|+.|-+.|.. + ..|-.-.+||..| |-+...|+.+....+++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666655554 4 6788899999999 99999999887766544
No 127
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=35.74 E-value=1.3e+02 Score=23.96 Aligned_cols=77 Identities=10% Similarity=0.005 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccc------cCCCCC----CCCCCHHHHHHHHHHHhh
Q 021486 15 GPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNY------LRPDIK----RGPFTEEEEKLVIQLHGI 84 (312)
Q Consensus 15 G~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~------L~p~ik----rg~WT~EED~~Ll~lv~~ 84 (312)
.+.|.++-..++.++. .| .....||+.++ .+...++ ||.+. +.+... ....+.++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lg--is~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQLR--VSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHHT--CCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4688888888888885 46 37789999998 4444433 33322 222211 234777788888888766
Q ss_pred cC-CchHHHhhhC
Q 021486 85 LG-NRWAAIASQL 96 (312)
Q Consensus 85 ~G-~kWs~IA~~L 96 (312)
.+ -.-.+|+..+
T Consensus 99 ~~~~s~~~i~~~l 111 (159)
T 2k27_A 99 NPTMFAWEIRDRL 111 (159)
T ss_dssp CSSSCHHHHHHHH
T ss_pred CccchHHHHHHHH
Confidence 43 2234455444
No 128
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=34.46 E-value=8 Score=31.00 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCC-------CCcchhchhhcCccc---ccccccccccccCC
Q 021486 23 EILVEYIKRNGH-------GSWRSLPKLAGLLRC---GKSCRLRWTNYLRP 63 (312)
Q Consensus 23 ~~L~~lV~kyG~-------~~W~~IAk~lg~~Rs---~kQCr~Rw~n~L~p 63 (312)
-+|..+|.+.|- +.|..|+..+|...+ +.+.+..|.++|.|
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 356777777762 379999999986332 34566677777654
No 129
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=31.92 E-value=8.9 Score=31.10 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=27.4
Q ss_pred HHHHHHHHhCC-------CCcchhchhhcCccc----ccccccccccccCC
Q 021486 24 ILVEYIKRNGH-------GSWRSLPKLAGLLRC----GKSCRLRWTNYLRP 63 (312)
Q Consensus 24 ~L~~lV~kyG~-------~~W~~IAk~lg~~Rs----~kQCr~Rw~n~L~p 63 (312)
+|..+|.+.|- +.|..|+..+|...+ +.+.+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 56677777662 379999999986332 34567777777765
No 130
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=30.85 E-value=67 Score=24.98 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHH
Q 021486 71 TEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKN 106 (312)
Q Consensus 71 T~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKn 106 (312)
+..-+..|..+....|..|..+|..| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56677788888899999999999999 777776654
No 131
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=30.80 E-value=61 Score=26.47 Aligned_cols=45 Identities=7% Similarity=0.029 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhhcC-CchHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q 021486 73 EEEKLVIQLHGILG-NRWAAIASQLPGRTDNEIKNLWNTHLKKRMLL 118 (312)
Q Consensus 73 EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~lLkkkl~~ 118 (312)
+-|.+|+++.++-| -.|.+||+.+ |=+...|+.|++.+.+..+.+
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 45778888887766 4699999999 999999999999887776543
No 132
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.93 E-value=87 Score=24.28 Aligned_cols=40 Identities=8% Similarity=0.054 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 74 EEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 74 ED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
.+..++.++...|-...+||..| |-+...|+.+....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44556666667788999999999 99999999887665544
No 133
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.86 E-value=86 Score=20.67 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=28.8
Q ss_pred HHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 75 EKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 75 D~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
+..++.++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 3 e~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKLI-DEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 34455553 5577889999999 99999999987766554
No 134
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=29.42 E-value=21 Score=29.59 Aligned_cols=54 Identities=26% Similarity=0.378 Sum_probs=33.0
Q ss_pred HHHHHHHHhCC-------CCcchhchhhcCccc----ccccccccccccCC--CCCCCCCCHHHHHH
Q 021486 24 ILVEYIKRNGH-------GSWRSLPKLAGLLRC----GKSCRLRWTNYLRP--DIKRGPFTEEEEKL 77 (312)
Q Consensus 24 ~L~~lV~kyG~-------~~W~~IAk~lg~~Rs----~kQCr~Rw~n~L~p--~ikrg~WT~EED~~ 77 (312)
+|..+|.+.|- +.|..|+..++...+ +.+.+..|.++|.| ...+|.=.++|-+.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~ 134 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQA 134 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 45566666652 379999999986332 34677788888876 22334434444333
No 135
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=29.15 E-value=78 Score=26.29 Aligned_cols=36 Identities=22% Similarity=0.117 Sum_probs=26.8
Q ss_pred HHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 78 VIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 78 Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
++.++-..|-...+||..| |-+...|+.+....+++
T Consensus 195 vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 195 VIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3334444577899999999 99999998887666544
No 136
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=29.12 E-value=12 Score=30.78 Aligned_cols=43 Identities=14% Similarity=0.184 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCC
Q 021486 20 EEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPD 64 (312)
Q Consensus 20 EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ 64 (312)
+-|.+|+.+.++.|.-.|..||+.+| -+...|+.|+.......
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 45889999999998889999999999 67788888877654443
No 137
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=28.36 E-value=66 Score=24.92 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=23.6
Q ss_pred cCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 85 LGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 85 ~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
.|-...+||..| |-+...|+++....+++
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467799999999 89999999887766544
No 138
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.13 E-value=69 Score=25.30 Aligned_cols=31 Identities=29% Similarity=0.578 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcCCchHHHhhhCCCCCHHHHHH
Q 021486 75 EKLVIQLHGILGNRWAAIASQLPGRTDNEIKN 106 (312)
Q Consensus 75 D~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKn 106 (312)
+..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567788899999999999999 777766644
No 139
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=26.87 E-value=40 Score=27.19 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=24.6
Q ss_pred cCCchHHHhhhCCCCCHHHHHHHHHHHHHHH
Q 021486 85 LGNRWAAIASQLPGRTDNEIKNLWNTHLKKR 115 (312)
Q Consensus 85 ~G~kWs~IA~~LpgRT~~qcKnRW~~lLkkk 115 (312)
.|-...+||..| |-+...|+++....+++-
T Consensus 150 ~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 150 GDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp SCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 467789999999 889999999888776553
No 140
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=26.45 E-value=88 Score=21.53 Aligned_cols=42 Identities=10% Similarity=0.083 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Q 021486 73 EEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRMLLMGLDP 123 (312)
Q Consensus 73 EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkkkl~~~g~~p 123 (312)
-|.+.|.++...+++++...|+.| |=+.. .|.+++++.|+.+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~--------tL~rklkk~gi~~ 60 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLS--------NLYRKIKSLNIRV 60 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHH--------HHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHH--------HHHHHHHHhCCCC
Confidence 477788889999999999999998 55544 3445566666654
No 141
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=25.51 E-value=74 Score=23.27 Aligned_cols=42 Identities=29% Similarity=0.236 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 70 FTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 70 WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
.|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+....+++
T Consensus 30 Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 30 LTEREMEILL-LI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp CCSHHHHHHH-HH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4555555554 44 5688889999999 99999999887766544
No 142
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=25.21 E-value=78 Score=25.09 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=22.7
Q ss_pred HHHHHHhhcCCchHHHhhhCCCCCHHHHHH
Q 021486 77 LVIQLHGILGNRWAAIASQLPGRTDNEIKN 106 (312)
Q Consensus 77 ~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKn 106 (312)
.|..+....|..|..+|..| |=+..+|..
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666888999999999999 766666543
No 143
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=24.88 E-value=83 Score=24.97 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=22.6
Q ss_pred HHHHHHhhcCCchHHHhhhCCCCCHHHHHH
Q 021486 77 LVIQLHGILGNRWAAIASQLPGRTDNEIKN 106 (312)
Q Consensus 77 ~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKn 106 (312)
.|..++...|..|..+|..| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56666888999999999999 766665543
No 144
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=24.64 E-value=1.1e+02 Score=22.65 Aligned_cols=34 Identities=15% Similarity=0.029 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHH
Q 021486 73 EEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNL 107 (312)
Q Consensus 73 EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnR 107 (312)
-|...|.++..++|++....|+.| |=+...+..+
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 467788889999999999999999 7776655444
No 145
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=23.63 E-value=92 Score=23.94 Aligned_cols=92 Identities=11% Similarity=0.035 Sum_probs=51.9
Q ss_pred CcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCccccccccccccc----cc---------CCCC--CCCCCCHHHHHH
Q 021486 13 KKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTN----YL---------RPDI--KRGPFTEEEEKL 77 (312)
Q Consensus 13 kKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n----~L---------~p~i--krg~WT~EED~~ 77 (312)
++..+|.|+-..++.++...|...=..||+.+|..+ ..++ +|.+ ++ ++.. .+..-.++.|+.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~--stl~-~~~~~~~~~~~~~~~~~~~~~~~kr~r~~~~~~~E~~ 80 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPP--STLS-TILKNKRAILASERKYGVASTCRKTNKLSPYDKLEGL 80 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCH--HHHH-HHHHTHHHHHHHHHHHGGGGGTCCCCCCCTTHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCH--HHHH-HHHhchhhhcchhhhccccchhhcccCCCCCHHHHHH
Confidence 567899999999999987777422227898888532 2221 1211 11 1111 123355677888
Q ss_pred HHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 78 VIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 78 Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
|++.+..... ..+| =|...|+.+...+...
T Consensus 81 L~~Wi~~~~~------~g~p-vs~~~I~~kA~~i~~~ 110 (131)
T 1hlv_A 81 LIAWFQQIRA------AGLP-VKGIILKEKALRIAEE 110 (131)
T ss_dssp HHHHHHHHGG------GTCC-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------CCCC-CCHHHHHHHHHHHHHH
Confidence 8887755421 1222 3566666666665544
No 146
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=23.56 E-value=1.6e+02 Score=23.26 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhcC-CchHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q 021486 73 EEEKLVIQLHGILG-NRWAAIASQLPGRTDNEIKNLWNTHLKKRML 117 (312)
Q Consensus 73 EED~~Ll~lv~~~G-~kWs~IA~~LpgRT~~qcKnRW~~lLkkkl~ 117 (312)
+-|..|+.+....| -.+.+||+.+ |=+...|..+.+.+.+..+.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~i 53 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGII 53 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCE
Confidence 34556777766666 5799999999 88999999999988777654
No 147
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=23.04 E-value=50 Score=28.44 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=14.9
Q ss_pred CCCCCCCCCHHHHHHHH
Q 021486 63 PDIKRGPFTEEEEKLVI 79 (312)
Q Consensus 63 p~ikrg~WT~EED~~Ll 79 (312)
|....|-||.++|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 56788999999999887
No 148
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=21.82 E-value=1.7e+02 Score=22.15 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHHHHHHHH
Q 021486 67 RGPFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKK 114 (312)
Q Consensus 67 rg~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW~~lLkk 114 (312)
....|+.|-+.|.-++ .|-.-.+||..| |-+...|+.+...++++
T Consensus 32 ~~~Lt~re~~Vl~l~~--~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA--EGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHH--HTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4567888877665543 688889999999 88999999887766554
No 149
>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*
Probab=20.42 E-value=1.8e+02 Score=28.70 Aligned_cols=59 Identities=20% Similarity=0.451 Sum_probs=41.2
Q ss_pred CCCcCCCCHHHHHHHHHHHHHhCCCCcchhchhhcCcccccccccccccccCCCCCCCCCCHHHHHHHHHHHhh
Q 021486 11 GLKKGPWAPEEDEILVEYIKRNGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTEEEEKLVIQLHGI 84 (312)
Q Consensus 11 ~lkKG~WT~EED~~L~~lV~kyG~~~W~~IAk~lg~~Rs~kQCr~Rw~n~L~p~ikrg~WT~EED~~Ll~lv~~ 84 (312)
|+-..|||.|+-..|++...+|+.+..---+ +...--|.+| |.+|+.+|-+.|.+|++.
T Consensus 8 GFYG~PWS~e~R~~l~~f~g~~kmNtYiYAP------KDDpyhr~~W---------Re~Yp~eel~~l~eLv~~ 66 (447)
T 2xsa_A 8 GFYGRDWRRDERATVMDWIAAAGMNTYIYGP------KDDVHVRARW---------RVPYDAAGLARLTELRDA 66 (447)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHTTCCEEEECC------TTCTTTTTTT---------TSCCCHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCceEEEcc------CCChHHHHhh---------cccCCHHHHHHHHHHHHH
Confidence 4556799999999999999999875332212 2333334455 457888888888888765
No 150
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=20.41 E-value=1.5e+02 Score=17.77 Aligned_cols=38 Identities=11% Similarity=0.244 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHhhcCCchHHHhhhCCCCCHHHHHHHH
Q 021486 69 PFTEEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLW 108 (312)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kWs~IA~~LpgRT~~qcKnRW 108 (312)
..+.++-..++.++ .-|-...+||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 45667766777765 4577899999999 88887776543
Done!