Your job contains 1 sequence.
>021488
MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV
EGYNRIYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA
LKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAV
TSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGEKGHLSSACLKKTADQTMVTGKV
SDNAGSRTGNFADNAGLGTTNVSDNAGLSAVSGKIRRRTCYECGEKGHLSSACPKKTADQ
TNSTTIQVEQL
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021488
(311 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2100696 - symbol:PHIP1 "phragmoplastin interac... 649 1.2e-63 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 190 2.1e-12 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 165 4.1e-10 1
ASPGD|ASPL0000073559 - symbol:AN10574 species:162425 "Eme... 168 7.8e-10 2
ZFIN|ZDB-GENE-080709-5 - symbol:pabpn1l "poly(A) binding ... 146 8.4e-10 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 161 1.9e-09 1
UNIPROTKB|B4DEH8 - symbol:PABPN1 "cDNA FLJ57714, highly s... 140 3.9e-09 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 140 3.9e-09 1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 159 4.7e-09 1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 154 5.3e-09 1
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 159 6.2e-09 1
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 161 6.6e-09 1
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 161 8.3e-09 1
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 161 8.4e-09 1
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 159 9.2e-09 1
UNIPROTKB|F6QIA5 - symbol:RBM39 "Uncharacterized protein"... 159 9.2e-09 1
UNIPROTKB|F2Z5I2 - symbol:RBM39 "Uncharacterized protein"... 159 9.2e-09 1
UNIPROTKB|E1BRU3 - symbol:LOC100858247 "Uncharacterized p... 159 9.3e-09 1
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 159 9.3e-09 1
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 159 9.3e-09 1
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 159 9.3e-09 1
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 159 9.3e-09 1
UNIPROTKB|F1N0I9 - symbol:SART3 "Uncharacterized protein"... 160 1.0e-08 1
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 158 1.8e-08 1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 155 2.6e-08 1
UNIPROTKB|F1NWW9 - symbol:PABPN1 "Uncharacterized protein... 134 3.6e-08 1
UNIPROTKB|F1RGA7 - symbol:SART3 "Uncharacterized protein"... 157 3.7e-08 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 131 3.9e-08 1
ZFIN|ZDB-GENE-040426-2401 - symbol:pabpn1 "poly(A) bindin... 147 5.5e-08 1
ZFIN|ZDB-GENE-040724-10 - symbol:sart3 "squamous cell car... 153 1.0e-07 1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p... 147 1.1e-07 1
ASPGD|ASPL0000069068 - symbol:AN7350 species:162425 "Emer... 149 1.2e-07 1
FB|FBgn0032620 - symbol:CG12288 species:7227 "Drosophila ... 148 1.2e-07 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 147 1.3e-07 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 147 1.3e-07 1
SGD|S000005119 - symbol:NOP13 "Nucleolar protein found in... 147 1.3e-07 1
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 149 1.3e-07 1
UNIPROTKB|Q6NVP7 - symbol:pabpn1 "Polyadenylate-binding p... 144 1.4e-07 1
UNIPROTKB|E9PTI5 - symbol:E9PTI5 "Uncharacterized protein... 149 1.4e-07 1
UNIPROTKB|Q7ZXB8 - symbol:pabpn1-b "Polyadenylate-binding... 143 1.8e-07 1
UNIPROTKB|F1NYA2 - symbol:LOC100859865 "Uncharacterized p... 124 2.3e-07 1
POMBASE|SPBC18H10.04c - symbol:sce3 "translation initiati... 140 2.5e-07 2
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s... 148 2.6e-07 1
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 146 3.0e-07 1
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei... 140 3.1e-07 1
MGI|MGI:1859158 - symbol:Pabpn1 "poly(A) binding protein,... 141 3.3e-07 1
UNIPROTKB|F1MTN4 - symbol:PABPN1 "Polyadenylate-binding p... 140 3.3e-07 1
UNIPROTKB|P08199 - symbol:NCL "Nucleolin" species:10036 "... 147 3.3e-07 1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p... 147 3.4e-07 1
UNIPROTKB|G4MYV6 - symbol:MGG_11418 "Nucleic acid-binding... 140 3.5e-07 1
UNIPROTKB|Q6TY21 - symbol:Pabpn1l-b "Embryonic polyadenyl... 136 3.6e-07 1
UNIPROTKB|F1NF69 - symbol:SART3 "Uncharacterized protein"... 147 3.7e-07 1
UNIPROTKB|F1NUL7 - symbol:SART3 "Uncharacterized protein"... 147 4.3e-07 1
UNIPROTKB|G3V7Z8 - symbol:Pabpn1 "Protein Pabpn1" species... 140 4.4e-07 1
UNIPROTKB|E1BWJ0 - symbol:SART3 "Uncharacterized protein"... 146 4.5e-07 1
UNIPROTKB|Q28165 - symbol:PABPN1 "Polyadenylate-binding p... 140 4.5e-07 1
UNIPROTKB|E2R6I0 - symbol:PABPN1 "Uncharacterized protein... 140 4.5e-07 1
UNIPROTKB|Q86U42 - symbol:PABPN1 "Polyadenylate-binding p... 140 4.5e-07 1
UNIPROTKB|F2Z5L8 - symbol:PABPN1 "Uncharacterized protein... 140 4.5e-07 1
UNIPROTKB|Q15056 - symbol:EIF4H "Eukaryotic translation i... 137 5.2e-07 1
UNIPROTKB|E2RIB8 - symbol:RBM28 "Uncharacterized protein"... 143 5.3e-07 2
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s... 145 5.6e-07 1
RGD|1311646 - symbol:Sart3 "squamous cell carcinoma antig... 146 6.4e-07 1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl... 134 6.5e-07 1
UNIPROTKB|I3LPP8 - symbol:RBM23 "Uncharacterized protein"... 141 7.0e-07 1
UNIPROTKB|Q9DDY9 - symbol:pabpn1-a "Polyadenylate-binding... 138 7.0e-07 1
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H... 144 7.2e-07 1
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M... 144 7.2e-07 1
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P... 144 7.2e-07 1
UNIPROTKB|E2QVA8 - symbol:RBM23 "Uncharacterized protein"... 141 7.5e-07 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 119 8.1e-07 1
ZFIN|ZDB-GENE-040718-77 - symbol:rbm34 "RNA binding motif... 140 8.6e-07 1
UNIPROTKB|F8W0K0 - symbol:EIF4B "Eukaryotic translation i... 123 8.8e-07 1
UNIPROTKB|I3LRD5 - symbol:EIF4H "Uncharacterized protein"... 135 9.1e-07 1
MGI|MGI:1341822 - symbol:Eif4h "eukaryotic translation in... 135 9.1e-07 1
ZFIN|ZDB-GENE-030131-6986 - symbol:ncl "nucleolin" specie... 143 9.3e-07 1
UNIPROTKB|J9NZ20 - symbol:ZCRB1 "Uncharacterized protein"... 89 9.7e-07 2
MGI|MGI:1914447 - symbol:Zcrb1 "zinc finger CCHC-type and... 89 9.7e-07 2
RGD|1309851 - symbol:Zcrb1 "zinc finger CCHC-type and RNA... 89 9.7e-07 2
UNIPROTKB|Q86U06 - symbol:RBM23 "Probable RNA-binding pro... 140 9.7e-07 1
ASPGD|ASPL0000053752 - symbol:AN1340 species:162425 "Emer... 128 1.1e-06 1
UNIPROTKB|E2QXZ2 - symbol:SART3 "Uncharacterized protein"... 144 1.2e-06 1
UNIPROTKB|E2RQG8 - symbol:EIF4H "Uncharacterized protein"... 134 1.2e-06 1
UNIPROTKB|Q74DJ2 - symbol:GSU1324 "RNA-binding protein" s... 117 1.3e-06 1
TIGR_CMR|GSU_1324 - symbol:GSU_1324 "RNA-binding protein"... 117 1.3e-06 1
ZFIN|ZDB-GENE-040426-2717 - symbol:hnrpdl "heterogeneous ... 135 1.6e-06 1
UNIPROTKB|B7ZKM0 - symbol:SART3 "Squamous cell carcinoma ... 142 1.7e-06 1
UNIPROTKB|Q15020 - symbol:SART3 "Squamous cell carcinoma ... 142 1.8e-06 1
UNIPROTKB|G4N5M5 - symbol:MGG_05264 "Translation initiati... 139 1.9e-06 1
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 120 1.9e-06 1
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n... 140 2.0e-06 1
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ... 140 2.0e-06 1
UNIPROTKB|Q8TBF4 - symbol:ZCRB1 "Zinc finger CCHC-type an... 86 2.2e-06 2
UNIPROTKB|E1BZH4 - symbol:LOC100859865 "Uncharacterized p... 132 2.3e-06 1
MGI|MGI:1858230 - symbol:Sart3 "squamous cell carcinoma a... 141 2.3e-06 1
UNIPROTKB|H7BY16 - symbol:NCL "Nucleolin" species:9606 "H... 112 2.4e-06 2
UNIPROTKB|I3LCY5 - symbol:LOC100525398 "Uncharacterized p... 133 2.6e-06 1
UNIPROTKB|E1BTK3 - symbol:ZCRB1 "Uncharacterized protein"... 86 2.8e-06 2
UNIPROTKB|Q56JZ7 - symbol:ZCRB1 "Zinc finger CCHC-type an... 86 2.8e-06 2
ZFIN|ZDB-GENE-010328-19 - symbol:eif4h "eukaryotic transl... 131 3.3e-06 1
WARNING: Descriptions of 223 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2100696 [details] [associations]
symbol:PHIP1 "phragmoplastin interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0009920
"cell plate formation involved in plant-type cell wall biogenesis"
evidence=IDA] [GO:0019898 "extrinsic to membrane" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
GO:GO:0046872 GO:GO:0019898 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 EMBL:AL132954 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P09651 GO:GO:0009920 IPI:IPI00527178 PIR:T47673
RefSeq:NP_191094.1 UniGene:At.28318 ProteinModelPortal:Q9M3B8
SMR:Q9M3B8 STRING:Q9M3B8 PRIDE:Q9M3B8 EnsemblPlants:AT3G55340.1
GeneID:824700 KEGG:ath:AT3G55340 TAIR:At3g55340 InParanoid:Q9M3B8
OMA:KKRRTCY PhylomeDB:Q9M3B8 ProtClustDB:CLSN2685284
Genevestigator:Q9M3B8 Uniprot:Q9M3B8
Length = 597
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 152/326 (46%), Positives = 197/326 (60%)
Query: 4 PDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPY-KAT-----KAKRTSDFTP 57
P+ G F GIA I F TE KRALA D + M +L IQ Y K T + K +S F P
Sbjct: 196 PEDGAFSGIAFITFDTEDGAKRALAFDRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAP 255
Query: 58 KIVEGYNRIYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
++V+GYNR+YIGNL+WD TE D++KLFSDC I+S+R G NKETGEF+GYAHVDF DS+S+
Sbjct: 256 EMVDGYNRVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFKDSVSV 315
Query: 118 SMALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNS 177
++ALKLDQ+V+ GRPVKI CA+ K R P+ + T++AG S + +++
Sbjct: 316 AIALKLDQQVICGRPVKICCAL--------KDR--PATDHTPGE-TNNAG---SYNMEDT 361
Query: 178 GAVTSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGEKGHLSSAC---LKKTADQT 234
A V A AG D + + S K++RR CYECGEKGHLS+AC L+K DQ
Sbjct: 362 YAAADPVPALAGRSEVDDGNYFATTVSSSKVKRRVCYECGEKGHLSTACPIKLQKADDQA 421
Query: 235 -------MVTGKVSDNAGSRTGNFAD----NAGLGTTNVSDNAGLSAVS---GKIRRRTC 280
V G+ + + N D N +TN + N G SA + GK++RR C
Sbjct: 422 NSKLGQETVDGRPAMQSYGLPKNSGDSYYMNETYASTNETYNGGYSASAVGTGKVKRRNC 481
Query: 281 YECGEKGHLSSACPKK--TADQTNST 304
YECGEKGHLS+ACP K TNST
Sbjct: 482 YECGEKGHLSTACPIKLQNTSHTNST 507
Score = 189 (71.6 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 96/317 (30%), Positives = 134/317 (42%)
Query: 5 DTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEG-- 62
+TG+F+G A ++F+ +V AL LD + G +KI A K + +D TP
Sbjct: 297 ETGEFKGYAHVDFKDSVSVAIALKLDQQVICGRPVKI--CCALKDRPATDHTPGETNNAG 354
Query: 63 -YNR--IY-----IGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDS 114
YN Y + L+ +D + S ++ E GE +G H+ +
Sbjct: 355 SYNMEDTYAAADPVPALAGRSEVDDGNYFATTVSSSKVKRRVCYECGE-KG--HLSTACP 411
Query: 115 LSLSMA-----LKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLG 169
+ L A KL QE V GRP S +P NS + A++ T + G
Sbjct: 412 IKLQKADDQANSKLGQETVDGRPAMQSYGLPK----NSGDSYYMNETYASTNETYNGGYS 467
Query: 170 TSNDADNSGAVTSNVAANAGS-GTSDVTEHIDL---SAVSGKIRRRTCYECGEKGHLSSA 225
S A +G V G G I L S + + +T E G S +
Sbjct: 468 AS--AVGTGKVKRRNCYECGEKGHLSTACPIKLQNTSHTNSTLDHQTV-EAGPTQVTSYS 524
Query: 226 CLKKTADQTMVTGKVSDNAGSRTGNFADNAGLGTTNVSDNAGL-SAVS-GKIRRRTCYEC 283
KKT D G D + + D TN +++A L SAVS GKI++R CYEC
Sbjct: 525 LQKKTRDTENNGGSFMDESYATVPISID-----VTNGANDASLTSAVSTGKIKKRNCYEC 579
Query: 284 GEKGHLSSACPKKTADQ 300
GEKGHLSSACP K Q
Sbjct: 580 GEKGHLSSACPNKLQKQ 596
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 190 (71.9 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 43/148 (29%), Positives = 80/148 (54%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGS-EMDGLFLKIQ---PYKATKA----KRTSDFTP 57
+G+ +G ++F T A K A+A +G+ E+DG + + P A +R +F
Sbjct: 300 SGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGD 359
Query: 58 KIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLS 116
++ E + +++GNLS++ TE+DL F C I S+R T+ ++G +G+ +V FSD S
Sbjct: 360 QLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDS 419
Query: 117 LSMALKLDQEVVRGRPVKISCAVPPKKG 144
++++ + GRP ++ + P G
Sbjct: 420 AKKCVEMNGHFIAGRPCRLDFSTPRTGG 447
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 165 (63.1 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 42/137 (30%), Positives = 73/137 (53%)
Query: 5 DTGKFRGIAIINFRT-EGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGY 63
DT + RG + T E A K + E++G L + A + R + P++ +
Sbjct: 149 DTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNR-AAPRGSRP-ERQPRVYDAA 206
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
RIY+GNL WD+ L++LFS+ K+ R +++ETG RG+ V S+ +++A+
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 266
Query: 123 -LDQEVVRGRPVKISCA 138
LD + + GR +K++ A
Sbjct: 267 ALDGQNLEGRAIKVNVA 283
>ASPGD|ASPL0000073559 [details] [associations]
symbol:AN10574 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
Length = 1290
Score = 168 (64.2 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 44/132 (33%), Positives = 67/132 (50%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEM-DGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYI 68
R + F+T A ALALDGS + +GL L + K + R D I EG I++
Sbjct: 945 RRFCYLQFKTSVAAHSALALDGSAVGNGLHLVV---KISDPSRKQDRNGPIYEG-REIHV 1000
Query: 69 GNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVV 128
N++W +E+DLK+LFS L K G +G+ +V FS + AL + ++
Sbjct: 1001 SNVNWSASEDDLKELFSRFGTVELVRLPRKVDGGSKGFGYVVFSSKEEATAALAMHEQEF 1060
Query: 129 RGRPVKISCAVP 140
RGRP+ + + P
Sbjct: 1061 RGRPLHVKVSAP 1072
Score = 50 (22.7 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 140 PPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVTSNVAAN 187
PP+ G S R KR T++ T + T+ + SG + N +N
Sbjct: 1223 PPQPGGRSGKRGHLGVKRGTAQPTSTTTTMTTTTTNASGEGSKNQKSN 1270
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 146 (56.5 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 35/113 (30%), Positives = 64/113 (56%)
Query: 27 LALDGSEMDGLFLKIQPYKATKAKRTSDFT--PKIVEGYNRIYIGNLSWDITEEDLKKLF 84
L +D S+M + PY + +A+ D T +I IY+GN+ + T ++L+ F
Sbjct: 28 LEMDESDMQYEVERQFPY-SPEAELFFDMTHEERIDSDRRSIYVGNVDYGATADELEMYF 86
Query: 85 SDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKIS 136
+ C ++ + N+ TG +G+A+++FSD S+ A+ LD+ + RGR +K+S
Sbjct: 87 NSCGHVNRVTIPYNRFTGHPKGFAYIEFSDRESVRTAMALDETLFRGRVIKVS 139
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 161 (61.7 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 41/145 (28%), Positives = 75/145 (51%)
Query: 5 DTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGY 63
+T + RG + + + A+ + +++G L + KA + P++ E
Sbjct: 186 ETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN--KAAPRGSRPERAPRVYEPA 243
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
R+Y+GNL WD+ L++LFS+ K+ R ++ETG RG+ V SD L+ A+
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 123 -LDQEVVRGRPVKISCAV--PPKKG 144
LD + + GR ++++ A PP++G
Sbjct: 304 ALDGQNLEGRAIRVNVAEERPPRRG 328
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 140 (54.3 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 30/100 (30%), Positives = 57/100 (57%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K +G +G+A+++FSD S+ +L LD
Sbjct: 46 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 105
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTD 164
+ + RGR +K+ + GI++ R P R ++ T+
Sbjct: 106 ESLFRGRQIKVIPKRTNRPGISTTDRGFP-RARYRARTTN 144
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 140 (54.3 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 30/100 (30%), Positives = 57/100 (57%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K +G +G+A+++FSD S+ +L LD
Sbjct: 46 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 105
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTD 164
+ + RGR +K+ + GI++ R P R ++ T+
Sbjct: 106 ESLFRGRQIKVIPKRTNRPGISTTDRGFP-RARYRARTTN 144
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 159 (61.0 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 47/151 (31%), Positives = 81/151 (53%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK--AKRTSDFTPKIVEGYNRIY 67
+GIA + F +V A+ L G + G+ + +Q +A K A ++ K G R+Y
Sbjct: 37 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLY 96
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LDQ 125
+G+L ++ITE+ L+ +F +I S++ + ETG +GY + FSDS AL+ L+
Sbjct: 97 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 156
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNK 156
+ GRP+K+ V + +S S L S++
Sbjct: 157 FELAGRPMKVG-HVTERTDASSASSFLDSDE 186
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 154 (59.3 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 43/137 (31%), Positives = 67/137 (48%)
Query: 5 DTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGY 63
DTG+ RG A + + LDG+E G LK+ A K K + P E
Sbjct: 121 DTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVN--FADKPKPNKE--PLYPETE 176
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
+++++GNLSW +T E L F +C + R + +TG RGY V +S + AL+
Sbjct: 177 HKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALE 236
Query: 123 -LDQEVVRGRPVKISCA 138
LD + GR ++++ A
Sbjct: 237 SLDGFELEGRAIRVNLA 253
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 159 (61.0 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 47/151 (31%), Positives = 81/151 (53%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK--AKRTSDFTPKIVEGYNRIY 67
+GIA + F +V A+ L G + G+ + +Q +A K A ++ K G R+Y
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLY 253
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LDQ 125
+G+L ++ITE+ L+ +F +I S++ + ETG +GY + FSDS AL+ L+
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNK 156
+ GRP+K+ V + +S S L S++
Sbjct: 314 FELAGRPMKVG-HVTERTDASSASSFLDSDE 343
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 161 (61.7 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 58/220 (26%), Positives = 103/220 (46%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSD---FTP 57
+T T +F+GIA I F +V AL L G + G+ + +Q +A K + + F P
Sbjct: 269 ITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQP 328
Query: 58 KIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLS 116
K G R+Y+G+L ++ITE+ L+ +F KI +++ + ETG +GY + + ++
Sbjct: 329 KSHTGPMRLYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADD 388
Query: 117 LSMALK-LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSND-A 174
AL+ L+ + GR +K+ V + +N+ S R + + L A
Sbjct: 389 AKKALEQLNGFELAGRLMKVG-NVTERLDMNTTSLDTDEMDRTGIDLGATGRLQLMFKLA 447
Query: 175 DNSGAVTSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCY 214
+ +G AANA T+ + V+ I + C+
Sbjct: 448 EGAGLAVPQAAANALLATAPQPAPLQQQEVAPSIATQ-CF 486
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 161 (61.7 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 65/258 (25%), Positives = 113/258 (43%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNR 65
G +G+A I F+TE ++AL G+E+DG + I Y K+++ S E
Sbjct: 403 GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVID-YTGEKSQQESQKGGGERESKTL 461
Query: 66 IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LD 124
I + NLS+ +EE L++LF K +S++ N + G +GYA V+F + AL +
Sbjct: 462 I-VNNLSYAASEETLQELFK--KATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSCN 517
Query: 125 QEVVRGRPVKISCAVPP-KKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNS--GAVT 181
+ GR +++ + P +KG N +R + + T V + T S G+++
Sbjct: 518 NTEIEGRAIRLEFSSPSWQKG-NMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGSIS 576
Query: 182 SNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE-KGHLSSACLKKTADQTMVTGKV 240
+ + + +G+S +D S+ + E GE G+ + K + G
Sbjct: 577 ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGEFQRGGGF 636
Query: 241 SDNAGSRTGNFADNAGLG 258
G R G G G
Sbjct: 637 GGGFGGRGGRGGGRGGFG 654
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 161 (61.7 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 65/258 (25%), Positives = 113/258 (43%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNR 65
G +G+A I F+TE ++AL G+E+DG + I Y K+++ S E
Sbjct: 405 GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVID-YTGEKSQQESQKGGGERESKTL 463
Query: 66 IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LD 124
I + NLS+ +EE L++LF K +S++ N + G +GYA V+F + AL +
Sbjct: 464 I-VNNLSYAASEETLQELFK--KATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSCN 519
Query: 125 QEVVRGRPVKISCAVPP-KKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNS--GAVT 181
+ GR +++ + P +KG N +R + + T V + T S G+++
Sbjct: 520 NTEIEGRAIRLEFSSPSWQKG-NMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGSIS 578
Query: 182 SNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE-KGHLSSACLKKTADQTMVTGKV 240
+ + + +G+S +D S+ + E GE G+ + K + G
Sbjct: 579 ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGEFQRGGGF 638
Query: 241 SDNAGSRTGNFADNAGLG 258
G R G G G
Sbjct: 639 GGGFGGRGGRGGGRGGFG 656
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 159 (61.0 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 47/151 (31%), Positives = 81/151 (53%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK--AKRTSDFTPKIVEGYNRIY 67
+GIA + F +V A+ L G + G+ + +Q +A K A ++ K G R+Y
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLY 253
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LDQ 125
+G+L ++ITE+ L+ +F +I S++ + ETG +GY + FSDS AL+ L+
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNK 156
+ GRP+K+ V + +S S L S++
Sbjct: 314 FELAGRPMKVG-HVTERTDASSASSFLDSDE 343
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 159 (61.0 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 47/151 (31%), Positives = 81/151 (53%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK--AKRTSDFTPKIVEGYNRIY 67
+GIA + F +V A+ L G + G+ + +Q +A K A ++ K G R+Y
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLY 253
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LDQ 125
+G+L ++ITE+ L+ +F +I S++ + ETG +GY + FSDS AL+ L+
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNK 156
+ GRP+K+ V + +S S L S++
Sbjct: 314 FELAGRPMKVG-HVTERTDASSASSFLDSDE 343
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 159 (61.0 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 47/151 (31%), Positives = 81/151 (53%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK--AKRTSDFTPKIVEGYNRIY 67
+GIA + F +V A+ L G + G+ + +Q +A K A ++ K G R+Y
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLY 253
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LDQ 125
+G+L ++ITE+ L+ +F +I S++ + ETG +GY + FSDS AL+ L+
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNK 156
+ GRP+K+ V + +S S L S++
Sbjct: 314 FELAGRPMKVG-HVTERTDASSASSFLDSDE 343
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 159 (61.0 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 47/151 (31%), Positives = 81/151 (53%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK--AKRTSDFTPKIVEGYNRIY 67
+GIA + F +V A+ L G + G+ + +Q +A K A ++ K G R+Y
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLY 253
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LDQ 125
+G+L ++ITE+ L+ +F +I S++ + ETG +GY + FSDS AL+ L+
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNK 156
+ GRP+K+ V + +S S L S++
Sbjct: 314 FELAGRPMKVG-HVTERTDASSASSFLDSDE 343
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 159 (61.0 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 47/151 (31%), Positives = 81/151 (53%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK--AKRTSDFTPKIVEGYNRIY 67
+GIA + F +V A+ L G + G+ + +Q +A K A ++ K G R+Y
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLY 253
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LDQ 125
+G+L ++ITE+ L+ +F +I S++ + ETG +GY + FSDS AL+ L+
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNK 156
+ GRP+K+ V + +S S L S++
Sbjct: 314 FELAGRPMKVG-HVTERTDASSASSFLDSDE 343
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 159 (61.0 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 47/151 (31%), Positives = 81/151 (53%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK--AKRTSDFTPKIVEGYNRIY 67
+GIA + F +V A+ L G + G+ + +Q +A K A ++ K G R+Y
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLY 253
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LDQ 125
+G+L ++ITE+ L+ +F +I S++ + ETG +GY + FSDS AL+ L+
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNK 156
+ GRP+K+ V + +S S L S++
Sbjct: 314 FELAGRPMKVG-HVTERTDASSASSFLDSDE 343
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 159 (61.0 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 47/151 (31%), Positives = 81/151 (53%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK--AKRTSDFTPKIVEGYNRIY 67
+GIA + F +V A+ L G + G+ + +Q +A K A ++ K G R+Y
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLY 253
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LDQ 125
+G+L ++ITE+ L+ +F +I S++ + ETG +GY + FSDS AL+ L+
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNK 156
+ GRP+K+ V + +S S L S++
Sbjct: 314 FELAGRPMKVG-HVTERTDASSASSFLDSDE 343
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 159 (61.0 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 47/151 (31%), Positives = 81/151 (53%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK--AKRTSDFTPKIVEGYNRIY 67
+GIA + F +V A+ L G + G+ + +Q +A K A ++ K G R+Y
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLY 253
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LDQ 125
+G+L ++ITE+ L+ +F +I S++ + ETG +GY + FSDS AL+ L+
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNK 156
+ GRP+K+ V + +S S L S++
Sbjct: 314 FELAGRPMKVG-HVTERTDASSASSFLDSDE 343
>UNIPROTKB|F1N0I9 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 EMBL:DAAA02045494 IPI:IPI00842907
Ensembl:ENSBTAT00000045157 OMA:PYSMSEP Uniprot:F1N0I9
Length = 655
Score = 160 (61.4 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 46/176 (26%), Positives = 87/176 (49%)
Query: 3 FPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSD--FTPKIV 60
F + G FRG + FR E A +AL LD ++G + + P K+K F
Sbjct: 437 FSNRGDFRGYCYVEFREEAAALQALQLDRQSVEGRPMFVSPC-VDKSKNPDFKVFRYSTA 495
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDCK----ISSLRFGTNKETGEFRGYAHVDFSDSLS 116
+++++ L + T+E+L+++ CK + +R TN+ G+ +G A+V++ +
Sbjct: 496 LEKHKLFVSGLPFSCTKEELEEI---CKAHGTVKDIRLVTNR-AGKPKGLAYVEYENESQ 551
Query: 117 LSMA-LKLDQEVVRGRPVKISCAVPPKKGINSK--SRSLPSNKRATSKVTDSAGLG 169
S A LK+D +R +K++ + PP++ + K +R P + +V + G G
Sbjct: 552 ASQAVLKMDGMTIRENVIKVAISNPPQRKVPEKPEARKAPGSALLPRQVYGARGKG 607
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 158 (60.7 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 65/258 (25%), Positives = 113/258 (43%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNR 65
G +G+A I F+TE ++AL G+E+DG + I Y K+++ S E
Sbjct: 405 GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVID-YTGEKSQQESQKGGGERESKTL 463
Query: 66 IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LD 124
I + NLS+ +EE L++LF K +S++ N + G +GYA V+F + AL +
Sbjct: 464 I-VNNLSYAASEETLQELFK--KATSIKMPQNNQ-GRPKGYAFVEFPTAEDAKEALNSCN 519
Query: 125 QEVVRGRPVKISCAVPP-KKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNS--GAVT 181
+ GR +++ + P +KG N +R + + T V + T S G+++
Sbjct: 520 NTEIEGRAIRLEFSSPSWQKG-NMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGSIS 578
Query: 182 SNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE-KGHLSSACLKKTADQTMVTGKV 240
+ + + +G+S +D S+ + E GE G+ + K + G
Sbjct: 579 ARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGEFQRGGGF 638
Query: 241 SDNAGSRTGNFADNAGLG 258
G R G G G
Sbjct: 639 GGGFGGRGGRGGRGGGRG 656
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 155 (59.6 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 42/130 (32%), Positives = 72/130 (55%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK--AKRTSDFTPKIVEGYNRIY 67
+GIA I F +V A+ L G + G+ + +Q +A K A ++ K G R+Y
Sbjct: 190 KGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAAALANNLQKGSAGPMRLY 249
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LDQ 125
+G+L ++ITE+ L+ +F +I S++ + ETG +GY + FSD+ AL+ L+
Sbjct: 250 VGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNG 309
Query: 126 EVVRGRPVKI 135
+ GRP+K+
Sbjct: 310 FELAGRPMKV 319
>UNIPROTKB|F1NWW9 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 OMA:MAANQEG EMBL:AADN02054103
IPI:IPI00598135 ProteinModelPortal:F1NWW9
Ensembl:ENSGALT00000010095 Uniprot:F1NWW9
Length = 184
Score = 134 (52.2 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 31/93 (33%), Positives = 54/93 (58%)
Query: 60 VEGYNR-IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
VE R IY+GN+ + T E+L+ F+ C +I+ + +K +G +GYA+++F S+
Sbjct: 47 VEADQRSIYVGNVDYGGTAEELESHFNICGRINRVTILCDKFSGHPKGYAYIEFEQKSSV 106
Query: 118 SMALKLDQEVVRGRPVKISCAVPPKKGINSKSR 150
A++LD+ + RGR +K+ GI+S R
Sbjct: 107 KAAVELDESIFRGRVIKVLPKRTNMPGISSTDR 139
>UNIPROTKB|F1RGA7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 OMA:SQAVMKM EMBL:CU424486
RefSeq:XP_001926720.3 UniGene:Ssc.37664 Ensembl:ENSSSCT00000010898
GeneID:100152586 KEGG:ssc:100152586 Uniprot:F1RGA7
Length = 959
Score = 157 (60.3 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 46/176 (26%), Positives = 85/176 (48%)
Query: 3 FPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSD--FTPKIV 60
F + G FRG + F+ E A +RAL LD ++G + + P K+K F
Sbjct: 735 FSNRGDFRGYCYVEFKEEAAAQRALELDRKSVEGRPMFVSPC-VDKSKNPDFKVFRYSTA 793
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDCK----ISSLRFGTNKETGEFRGYAHVDFSDSLS 116
++++I L + T E+L+++ CK + +R TN+ G+ +G A+V++ +
Sbjct: 794 LEKHKLFISGLPFSCTREELEEI---CKAHGTVKDIRLVTNR-AGKPKGLAYVEYENESQ 849
Query: 117 LSMA-LKLDQEVVRGRPVKISCAVPPKKGINSK--SRSLPSNKRATSKVTDSAGLG 169
S A LK+D V+ +K++ + PP++ K +R P ++ + G G
Sbjct: 850 ASQAVLKMDGMTVKENIIKVAISNPPQRKFPEKPEARKAPGGPLVPRQIYGARGKG 905
Score = 122 (48.0 bits), Expect = 0.00030, P = 0.00030
Identities = 35/121 (28%), Positives = 63/121 (52%)
Query: 36 GLFLKIQPYKATKAKRTSDFTPKIVEGYNR----IYIGNLSWDITEED--LKKLFSDC-K 88
G+ L +P + A R PK++ ++ +++ NL + + E L+ LF C
Sbjct: 670 GVELPSKPKERVAAPRRD--VPKVLHDSSKDGITVFVSNLPYSLEEPATVLRPLFEACGD 727
Query: 89 ISSLR-FGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPKKGINS 147
+ +R +N+ G+FRGY +V+F + + AL+LD++ V GRP+ +S V K +
Sbjct: 728 VVEIRPIFSNR--GDFRGYCYVEFKEEAAAQRALELDRKSVEGRPMFVSPCVDKSKNPDF 785
Query: 148 K 148
K
Sbjct: 786 K 786
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 131 (51.2 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 32/101 (31%), Positives = 57/101 (56%)
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSL-SLSMAL 121
++++IG LSW + E+ LK FS +++ +R +K +G RG+ VDF++ +LS
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKD 100
Query: 122 KLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKV 162
+D + + GRP++IS A+ +G L +KR +V
Sbjct: 101 AMDGKGLLGRPLRISFALERVRGGPVVVPRLGKSKRERERV 141
>ZFIN|ZDB-GENE-040426-2401 [details] [associations]
symbol:pabpn1 "poly(A) binding protein, nuclear 1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2401 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 KO:K14396
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD
CTD:8106 EMBL:BX294113 EMBL:BC068437 EMBL:BC079522 IPI:IPI00508307
RefSeq:NP_001098602.1 RefSeq:NP_998424.1 UniGene:Dr.76617
SMR:Q6NUT4 STRING:Q6NUT4 Ensembl:ENSDART00000066722 GeneID:406543
KEGG:dre:406543 InParanoid:Q6NUT4 OMA:MNLSPPP NextBio:20818107
Uniprot:Q6NUT4
Length = 284
Score = 147 (56.8 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 30/96 (31%), Positives = 55/96 (57%)
Query: 60 VEGYNR-IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
+E R IY+GN+ + T E+L+ F C ++ + +K TG +G+A+++F+D S+
Sbjct: 93 IEADGRSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFADKESV 152
Query: 118 SMALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLP 153
A+ LD+ + RGR +K+ + GI++ R P
Sbjct: 153 RTAMALDESLFRGRQIKVGAKRTNRPGISTTDRGFP 188
>ZFIN|ZDB-GENE-040724-10 [details] [associations]
symbol:sart3 "squamous cell carcinoma antigen
recognised by T cells 3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IMP] [GO:0031017 "exocrine pancreas
development" evidence=IMP] [GO:0030098 "lymphocyte differentiation"
evidence=IMP] [GO:0048538 "thymus development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
ZFIN:ZDB-GENE-040724-10 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0048538 GO:GO:0000245
GO:GO:0031017 GO:GO:0030098 HOGENOM:HOG000063708 HOVERGEN:HBG053888
EMBL:BC159116 IPI:IPI00483754 UniGene:Dr.78990
ProteinModelPortal:B0JZB9 SMR:B0JZB9 STRING:B0JZB9
ArrayExpress:B0JZB9 Uniprot:B0JZB9
Length = 952
Score = 153 (58.9 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 46/155 (29%), Positives = 74/155 (47%)
Query: 3 FPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQP-YKATKAKRTSDFTPKIVE 61
F G FRG + F AV AL +D E+DG + + P K F K
Sbjct: 724 FTAKGTFRGYCYVQFEDRLAVPEALKMDRQEVDGRPMYVSPCVDKNKNPDFKVFKYKTSM 783
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
++I+I L + T+E L+ L + I ++R TN+ +G+ +G A+V+F D S A
Sbjct: 784 EKHKIFISGLPYSATKETLEDLCKEHGTIRAIRIVTNR-SGKSKGLAYVEFEDEAQASQA 842
Query: 121 -LKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPS 154
LK+D ++ + ++ + PP G K + PS
Sbjct: 843 VLKMDGTMLENFTLSVAISNPP--GRRMKDEAAPS 875
Score = 129 (50.5 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 52/187 (27%), Positives = 87/187 (46%)
Query: 24 KRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEED--LK 81
+RA +E G F K Q ++ D + + N +++ NL++++ + + L+
Sbjct: 650 RRAPPARKTEPPG-FRKNQQGAPEPQRQPHDMPKEQRKDENCVFVSNLTFNMEDPEGKLR 708
Query: 82 KLFSDC-KISSLR-FGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAV 139
LF C I +R T K G FRGY +V F D L++ ALK+D++ V GRP+ +S V
Sbjct: 709 TLFQGCGTIQQVRPVFTAK--GTFRGYCYVQFEDRLAVPEALKMDRQEVDGRPMYVSPCV 766
Query: 140 PPKKGINSK----SRSLPSNKRATSKVTDSAGLGTSND-ADNSGAVTS-NVAANAGSGTS 193
K + K S+ +K S + SA T D G + + + N SG S
Sbjct: 767 DKNKNPDFKVFKYKTSMEKHKIFISGLPYSATKETLEDLCKEHGTIRAIRIVTNR-SGKS 825
Query: 194 DVTEHID 200
+++
Sbjct: 826 KGLAYVE 832
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 147 (56.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 51/218 (23%), Positives = 104/218 (47%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTP---KIVEG 62
GK +GIA I F+TE ++ L G+E+DG + + Y K + DF G
Sbjct: 80 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLY-YTGEKGQN-QDFRGGKNSTWSG 137
Query: 63 YNR-IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL 121
++ + + NL++ TEE L+++F K + ++ N + G+ +GYA ++F+ AL
Sbjct: 138 ESKTLVLSNLAYSATEETLQEVFE--KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 194
Query: 122 K-LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAV 180
++ + GR +++ P +G + +RS PS +++ T ++ + G++
Sbjct: 195 NSCNKREIEGRAIRLELQGP--RG-SPNARSQPSKTLFVKGLSEETTEETLKESFD-GSI 250
Query: 181 TSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE 218
+ + + +G+S +D ++ + E GE
Sbjct: 251 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 288
>ASPGD|ASPL0000069068 [details] [associations]
symbol:AN7350 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001304 GO:GO:0003743 ProteinModelPortal:C8VCK1
EnsemblFungi:CADANIAT00000083 HOGENOM:HOG000167806 OMA:EPPMERP
Uniprot:C8VCK1
Length = 497
Score = 149 (57.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 36/111 (32%), Positives = 59/111 (53%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
+IGNLS+D T D+ LF+DC ++++R +K T +G+ +V+F L AL L
Sbjct: 85 HIGNLSFDATSGDISDLFADCGVTNVRIVEDKLTKAPKGFGYVEFETVDGLKKALDLSGA 144
Query: 127 VVRGRPVKISCAVPPK----KGINSKSRSLPSNKRATSKVTDSAGLGTSND 173
++GR +++S A PPK K ++ R + +V D A G + D
Sbjct: 145 TLQGRSIRVSIAEPPKERDVKELDWTRRGPLPDVAPPRRVPDRASFGRNLD 195
>FB|FBgn0032620 [details] [associations]
symbol:CG12288 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005875 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 HSSP:P52298
EMBL:AY118842 ProteinModelPortal:Q8MSG1 SMR:Q8MSG1 STRING:Q8MSG1
PaxDb:Q8MSG1 PRIDE:Q8MSG1 FlyBase:FBgn0032620 InParanoid:Q8MSG1
OrthoDB:EOG40P2PK ArrayExpress:Q8MSG1 Bgee:Q8MSG1 Uniprot:Q8MSG1
Length = 435
Score = 148 (57.2 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 43/153 (28%), Positives = 76/153 (49%)
Query: 24 KRALALDGSEMDGLFLKIQPYK-ATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKK 82
++ALAL+GSE L++ P A K + D P + I++G+L + TEE L++
Sbjct: 219 QQALALNGSEFKENHLRVTPASMAEKFGQAKDQQPSDKDAKRTIFVGSLKYSATEEQLRE 278
Query: 83 LFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPP 141
+FS C +I +R + + G +G A+V F ++ +AL+L+Q ++ RP+ +
Sbjct: 279 IFSSCGEIDYIRCLQDGDKG-CKGVAYVCFQKPDAVGLALELNQTLLDDRPINVERYQVK 337
Query: 142 KKGINSKSRSLPSNKRATSKVTDSAGLGTSNDA 174
K G + ++ A SK + N A
Sbjct: 338 KLGAKQVRDAAAAS--AASKTSSKTKAKNQNSA 368
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 40/155 (25%), Positives = 80/155 (51%)
Query: 6 TGKFRGIAIINFRTEGAVKRALA-LDGSEMDG--LFLKIQPYKATKAKRTSDFTPKIVEG 62
TGK RG ++F ++ A ++AL + G E+DG + L + K +K +D + +
Sbjct: 205 TGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDS 264
Query: 63 YN----RIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
+ ++IGNLS++ ++L +F + + S R T+ +T + +G+ +V FS
Sbjct: 265 QSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEA 324
Query: 118 SMALK-LDQEVVRGRPVKISCAVPPKKGINSKSRS 151
AL+ ++ E + GRP ++ + P N+ + +
Sbjct: 325 KAALEAMNGEYIEGRPCRLDFSTPRDNTNNNNNNN 359
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 40/155 (25%), Positives = 80/155 (51%)
Query: 6 TGKFRGIAIINFRTEGAVKRALA-LDGSEMDG--LFLKIQPYKATKAKRTSDFTPKIVEG 62
TGK RG ++F ++ A ++AL + G E+DG + L + K +K +D + +
Sbjct: 205 TGKSRGYGYVDFESKSAAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDS 264
Query: 63 YN----RIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
+ ++IGNLS++ ++L +F + + S R T+ +T + +G+ +V FS
Sbjct: 265 QSPPSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEA 324
Query: 118 SMALK-LDQEVVRGRPVKISCAVPPKKGINSKSRS 151
AL+ ++ E + GRP ++ + P N+ + +
Sbjct: 325 KAALEAMNGEYIEGRPCRLDFSTPRDNTNNNNNNN 359
>SGD|S000005119 [details] [associations]
symbol:NOP13 "Nucleolar protein found in preribosomal
complexes" species:4932 "Saccharomyces cerevisiae" [GO:0030684
"preribosome" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000005119 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723 eggNOG:COG0724
GO:GO:0030684 EMBL:Z71451 PIR:S63130 RefSeq:NP_014224.2
ProteinModelPortal:P53883 SMR:P53883 DIP:DIP-4331N IntAct:P53883
MINT:MINT-479067 STRING:P53883 PaxDb:P53883 PeptideAtlas:P53883
EnsemblFungi:YNL175C GeneID:855547 KEGG:sce:YNL175C CYGD:YNL175c
HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF NextBio:979619
Genevestigator:P53883 GermOnline:YNL175C Uniprot:P53883
Length = 403
Score = 147 (56.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 46/187 (24%), Positives = 94/187 (50%)
Query: 8 KFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGY-NRI 66
K +G + F+ +K L L S ++G + I+ + + D + + +RI
Sbjct: 181 KNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLIKDSENYSGRPDKDDLVAMSKNPPSRI 240
Query: 67 -YIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
++GNLS+D+T++ L+K F C I +R T +++G+ +G+A +DF + + ALK D
Sbjct: 241 LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNALK-D 299
Query: 125 QEV--VRGRPVKISCAVP-PKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVT 181
+ + GRP+++ K+ + K ++ N ++ ++++ G + DN G+
Sbjct: 300 KSCRKIAGRPLRMEYGEDRSKRQVRKKVENVSRNNSSSFDISNNKGYDRAGQ-DN-GSKP 357
Query: 182 SNVAANA 188
+NA
Sbjct: 358 EYKRSNA 364
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 149 (57.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 43/151 (28%), Positives = 79/151 (52%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK--AKRTSDFTPKIVEGYNRIY 67
+GIA + F +V A+ L G + G+ + +Q +A K A + + G R+Y
Sbjct: 208 KGIAYVEFVDSTSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMASMLQRGGAGPMRLY 267
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LDQ 125
+G+L ++ITE+ L+ +F KI ++ + ETG +GY + F+D+ AL+ L+
Sbjct: 268 VGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQLNG 327
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNK 156
+ GRP+K+ V + +S S L +++
Sbjct: 328 FELAGRPMKVG-HVTERSDASSASSFLDNDE 357
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 144 (55.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K TG +G+A+++FSD S+ +L LD
Sbjct: 165 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALD 224
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLP 153
+ + RGR +K+ + GI++ R P
Sbjct: 225 ESLFRGRQIKVVPKRTNRPGISTTDRGFP 253
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 149 (57.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 62/256 (24%), Positives = 115/256 (44%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPK--IVEGY 63
G+ +GIA I F++E ++ L G+E+DG + + Y K +R + T K G
Sbjct: 284 GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY-YTGEKGQR-QERTGKNSTWSGE 341
Query: 64 NR-IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
++ + + NLS+ TEE L+++F K + ++ N G+ +GYA ++F+ AL
Sbjct: 342 SKTLVLSNLSYSATEETLQEVFE--KATFIKVPQNPH-GKSKGYAFIEFASFEDAKEALN 398
Query: 123 LDQEV-VRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVT 181
++ + GR +++ P +G + +RS PS +++ T ++ G+V
Sbjct: 399 SCNKMEIEGRTIRLELQGP--RG-SPNARSQPSKTLFVKGLSEDTTEETLKESFE-GSVR 454
Query: 182 SNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGEKGHLSSACLKKTADQTMVTGKVS 241
+ + + +G+S +D ++ +T E E G + K T D GK
Sbjct: 455 ARIVTDRETGSSKGFGFVDFNSEEDA---KTAKEAMEDGEIDGN--KVTLDWAKPKGKGG 509
Query: 242 -DNAGSRTGNFADNAG 256
G G F G
Sbjct: 510 FGGRGGGRGGFGGRGG 525
>UNIPROTKB|Q7ZXB8 [details] [associations]
symbol:pabpn1-b "Polyadenylate-binding protein 2-B"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
KO:K14396 HSSP:P33240 EMBL:BC045063 RefSeq:NP_001080719.1
UniGene:Xl.21871 ProteinModelPortal:Q7ZXB8 SMR:Q7ZXB8 GeneID:380411
KEGG:xla:380411 CTD:380411 Xenbase:XB-GENE-1007055 Uniprot:Q7ZXB8
Length = 295
Score = 143 (55.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 29/89 (32%), Positives = 52/89 (58%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K TG +G+A+++FSD S+ +L LD
Sbjct: 164 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALD 223
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLP 153
+ + RGR +K+ + GI++ R P
Sbjct: 224 ESLFRGRQIKVVPKRTNRPGISTTDRGFP 252
>UNIPROTKB|F1NYA2 [details] [associations]
symbol:LOC100859865 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 EMBL:AADN02026007 IPI:IPI00581340
ProteinModelPortal:F1NYA2 Ensembl:ENSGALT00000001999 Uniprot:F1NYA2
Length = 146
Score = 124 (48.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D + S+R +KET +F+G+ +V+F + SL AL D
Sbjct: 43 YVGNLPFNTVQGDIDAIFKDLSVRSVRLVRDKETDKFKGFCYVEFDEVESLKEALTYDGA 102
Query: 127 VVRGRPVKISCA 138
++ R +++ A
Sbjct: 103 LLGDRSLRVDIA 114
>POMBASE|SPBC18H10.04c [details] [associations]
symbol:sce3 "translation initiation factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003723
"RNA binding" evidence=ISM] [GO:0003743 "translation initiation
factor activity" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005840 "ribosome" evidence=ISO] [GO:0006413 "translational
initiation" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC18H10.04c
GO:GO:0005829 GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0005840 GO:GO:0003743
eggNOG:COG0724 GO:GO:0002183 KO:K03258 EMBL:AJ000318 PIR:T45516
RefSeq:NP_595728.1 ProteinModelPortal:O14369 STRING:O14369
PRIDE:O14369 EnsemblFungi:SPBC18H10.04c.1 GeneID:2540528
KEGG:spo:SPBC18H10.04c OMA:ENHRDFS OrthoDB:EOG40KC7K
NextBio:20801655 Uniprot:O14369
Length = 388
Score = 140 (54.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
++GNLS+D+TE DL F + ++S+R + T RG+ +V+F + +LS AL L E
Sbjct: 97 HVGNLSFDLTENDLGDFFGE-GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 127 VVRGRPVKISCAVPPKKGINSKSRS 151
+ GRPV+I+ A P++ + RS
Sbjct: 156 DLMGRPVRITVA-EPRRSFAREERS 179
Score = 43 (20.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 20/99 (20%), Positives = 34/99 (34%)
Query: 141 PKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVTSNVAANAGSGTSDVTEHID 200
P+ N + + PS TS G + DN+ +V V T D
Sbjct: 248 PRSSSNVNTEATPSATTTTSSKPKRDPFGGAKPVDNT-SVLQRVEEKLAKRTQSFRRE-D 305
Query: 201 LSAVSGKIRRRTCYECGEKGHLSSACLKKTADQTMVTGK 239
+ R+ + EK + A +K +D + G+
Sbjct: 306 NANRERSTSRKPSADKAEKTDKTDAIAEKVSDIRLGDGE 344
Score = 41 (19.5 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 229 KTADQTMVTGKVSDNAGSRTGNFA--DNA 255
K D T V +V + RT +F DNA
Sbjct: 279 KPVDNTSVLQRVEEKLAKRTQSFRREDNA 307
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 148 (57.2 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 51/217 (23%), Positives = 103/217 (47%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPK--IVEGY 63
GK +GIA I F+TE ++ L G+E+DG + + Y K + K G
Sbjct: 436 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLY-YTGEKGQSQDHRGGKNSTWSGE 494
Query: 64 NR-IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
++ + + NLS+ TEE L+++F K + ++ N + G+ +GYA ++F+ AL
Sbjct: 495 SKTLVLSNLSYSATEETLQEVFE--KATHIKVPQN-QNGKSKGYAFIEFASFEDAKEALN 551
Query: 123 -LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVT 181
++ + GR +++ P +G + +RS PS +++ T ++ + G++
Sbjct: 552 SCNKREIEGRAIRLELQGP--RG-SPNARSQPSKTLFVKGLSEDTTEETLKESFD-GSIR 607
Query: 182 SNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE 218
+ + + +G+S +D ++ + E GE
Sbjct: 608 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 644
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 146 (56.5 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 47/174 (27%), Positives = 83/174 (47%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAK--RTSDFTP--KIVE 61
+G+ +G+ + F+ E +V A+ L G ++ G+ + Q +A K + R S+ + K
Sbjct: 211 SGRSKGVGYVEFKDESSVAPAIQLTGQKLLGIPIIAQLTEAEKNRQARNSEASSGNKHSA 270
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDCKISSLRFGT--NKETGEFRGYAHVDFSDSLSLSM 119
++R+Y+GN+ + I E DL+ +F L F ETG RGY V F D
Sbjct: 271 PFHRLYVGNIHFSIDENDLQSVFEP--FGELEFVQLQKDETGRSRGYGFVQFRDPNQARE 328
Query: 120 AL-KLDQEVVRGRPVKISCA---VPPKKGINSKSRSLPSNKRATSKVTDSAGLG 169
AL K++ + GR +++ P+ ++S+S + S + S G G
Sbjct: 329 ALEKMNGYDLGGRAIRVGLGNDKFTPENTQRTQSQSANQSNFQGSMFSGSGGRG 382
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 140 (54.3 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 39/131 (29%), Positives = 71/131 (54%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYN---RI 66
+GIA + F +V A+ L G + G+ + +Q +A K R + + +G R+
Sbjct: 37 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK-NRLAAMANNLQKGNGGPMRL 95
Query: 67 YIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LD 124
Y+G+L ++ITE+ L+ +F KI ++ + +TG +GY + FSDS AL+ L+
Sbjct: 96 YVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 155
Query: 125 QEVVRGRPVKI 135
+ GRP+++
Sbjct: 156 GFELAGRPMRV 166
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 141 (54.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 28/92 (30%), Positives = 54/92 (58%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K +G +G+A+++FSD S+ +L LD
Sbjct: 170 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 229
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLPSNK 156
+ + RGR +K+ + GI++ R P ++
Sbjct: 230 ESLFRGRQIKVIPKRTNRPGISTTDRGFPRSR 261
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 140 (54.3 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 30/100 (30%), Positives = 57/100 (57%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K +G +G+A+++FSD S+ +L LD
Sbjct: 143 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 202
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTD 164
+ + RGR +K+ + GI++ R P R ++ T+
Sbjct: 203 ESLFRGRQIKVIPKRTNRPGISTTDRGFP-RARYRARTTN 241
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 147 (56.8 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 53/217 (24%), Positives = 106/217 (48%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPK--IVEGY 63
GK +GIA I F++E ++ L G+E+DG + + Y K +R + T K G
Sbjct: 427 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY-YTGEKGQR-QERTGKNSTWSGE 484
Query: 64 NR-IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
++ + + NLS+ TEE L+++F K + ++ N++ G+ +GYA ++F+ AL
Sbjct: 485 SKTLVLSNLSYSATEETLQEVFE--KATFIKVPQNQQ-GKSKGYAFIEFASFEDAKEALN 541
Query: 123 LDQEV-VRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVT 181
++ + GR +++ P +G + +RS PS +++ T ++ G+V
Sbjct: 542 SCNKMEIEGRTIRLELQGP--RG-SPNARSQPSKTLFVKGLSEDTTEETLKESFE-GSVR 597
Query: 182 SNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE 218
+ + + +G+S +D ++ + E GE
Sbjct: 598 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 634
>UNIPROTKB|I3LRH2 [details] [associations]
symbol:LOC100737210 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
Uniprot:I3LRH2
Length = 724
Score = 147 (56.8 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 51/218 (23%), Positives = 104/218 (47%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTP---KIVEG 62
GK +GIA I F+TE ++ L G+E+DG + + Y K + DF G
Sbjct: 439 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLY-YTGEKGQN-QDFRGGKNSTWSG 496
Query: 63 YNR-IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL 121
++ + + NL++ TEE L+++F K + ++ N + G+ +GYA ++F+ AL
Sbjct: 497 ESKTLVLSNLAYSATEETLQEVFE--KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 553
Query: 122 K-LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAV 180
++ + GR +++ P +G + +RS PS +++ T ++ + G++
Sbjct: 554 NSCNKREIEGRAIRLELQGP--RG-SPNARSQPSKTLFVKGLSEETTEETLKESFD-GSI 609
Query: 181 TSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE 218
+ + + +G+S +D ++ + E GE
Sbjct: 610 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 647
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 140 (54.3 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 47/170 (27%), Positives = 79/170 (46%)
Query: 7 GKFRGIAIINFRT-EGAVKRALALDGSEMDGLFLKIQP-YKATKAKRTSDFTPKIVEGYN 64
G +G I F T E A K + + G + + P KA+K + +
Sbjct: 110 GLSKGFGFIYFETPEAAQKACEEANNTFWHGRRINVAPRIKASKPGNRDAMNQEERTPTS 169
Query: 65 RIYIGNLSWDITEEDLKKLFSDCK-ISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-K 122
+YIGN+ ++ T+ L LF D + + +R ++ TG RG+AH DF D S + A+ K
Sbjct: 170 SLYIGNIPYESTDAALNNLFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKAVEK 229
Query: 123 LDQEVVRGRPVKISCAVP--PK-KGINSKSRSLPSNKRATSKVTDSAGLG 169
+ + GR +++ + P P+ + + + S S S S+ DS G G
Sbjct: 230 VKLMELMGRTLRVDYSTPRVPRNERMQTASGSRDSRDSRDSR--DSRGSG 277
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 136 (52.9 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
+Y+GN+ + T +DL+ FS C I+ + +K +G +GYA+++F++ S+ A+ +D
Sbjct: 95 VYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMD 154
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSR 150
+ V RGR +K+ GI+S R
Sbjct: 155 ETVFRGRTIKVLPKRTNMPGISSTDR 180
>UNIPROTKB|F1NF69 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00577406 Ensembl:ENSGALT00000007806
ArrayExpress:F1NF69 Uniprot:F1NF69
Length = 772
Score = 147 (56.8 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 36/100 (36%), Positives = 61/100 (61%)
Query: 57 PKIVEGYNR----IYIGNLSWDITEED--LKKLFSDC-KISSLR-FGTNKETGEFRGYAH 108
PK++ ++ +++ NLS+++T+ + LK+LF C ++S +R +NK G FRGY +
Sbjct: 577 PKVLHDSSKDNITVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNK--GTFRGYCY 634
Query: 109 VDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPKKGINSK 148
V+F D S AL +D++VV GRP+ +S V K + K
Sbjct: 635 VEFKDEKSALQALGMDRKVVEGRPMFVSPCVDKNKNPDFK 674
Score = 133 (51.9 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 36/153 (23%), Positives = 77/153 (50%)
Query: 3 FPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFT----PK 58
F + G FRG + F+ E + +AL +D ++G + + P + DF
Sbjct: 623 FSNKGTFRGYCYVEFKDEKSALQALGMDRKVVEGRPMFVSP--CVDKNKNPDFKVFRYST 680
Query: 59 IVEGYNRIYIGNLSWDITEEDLKKLF-SDCKISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
+E + +++I L + T+E+L+ + + + +R TN+ G+ +G A+V++ +
Sbjct: 681 TLEKH-KLFISGLPFSCTKEELEDICKAHGNVKDIRLVTNR-AGKPKGLAYVEYENEAQA 738
Query: 118 SMA-LKLDQEVVRGRPVKISCAVPPKKGINSKS 149
S A LK+D ++ +K++ + PP + + K+
Sbjct: 739 SQAVLKMDGLTIKEHVIKVAISNPPLRKLPDKA 771
>UNIPROTKB|F1NUL7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00819201 Ensembl:ENSGALT00000038897
ArrayExpress:F1NUL7 Uniprot:F1NUL7
Length = 857
Score = 147 (56.8 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 36/100 (36%), Positives = 61/100 (61%)
Query: 57 PKIVEGYNR----IYIGNLSWDITEED--LKKLFSDC-KISSLR-FGTNKETGEFRGYAH 108
PK++ ++ +++ NLS+++T+ + LK+LF C ++S +R +NK G FRGY +
Sbjct: 587 PKVLHDSSKDNITVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNK--GTFRGYCY 644
Query: 109 VDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPKKGINSK 148
V+F D S AL +D++VV GRP+ +S V K + K
Sbjct: 645 VEFKDEKSALQALGMDRKVVEGRPMFVSPCVDKNKNPDFK 684
Score = 137 (53.3 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 45/198 (22%), Positives = 97/198 (48%)
Query: 3 FPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFT----PK 58
F + G FRG + F+ E + +AL +D ++G + + P + DF
Sbjct: 633 FSNKGTFRGYCYVEFKDEKSALQALGMDRKVVEGRPMFVSP--CVDKNKNPDFKVFRYST 690
Query: 59 IVEGYNRIYIGNLSWDITEEDLKKLF-SDCKISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
+E + +++I L + T+E+L+ + + + +R TN+ G+ +G A+V++ +
Sbjct: 691 TLEKH-KLFISGLPFSCTKEELEDICKAHGNVKDIRLVTNR-AGKPKGLAYVEYENEAQA 748
Query: 118 SMA-LKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSK-VTDSAGLGTSNDAD 175
S A LK+D ++ +K++ + PP + + K+ + +++ A + + + G G + +
Sbjct: 749 SQAVLKMDGLTIKEHVIKVAISNPPLRKLPDKAEAGRASQFAVPRQIYGARGKGRTQLSM 808
Query: 176 NSGAVT--SNVAANAGSG 191
A+ SN A A +G
Sbjct: 809 MPRALQRQSNPVAKAENG 826
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 140 (54.3 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 30/100 (30%), Positives = 57/100 (57%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K +G +G+A+++FSD S+ +L LD
Sbjct: 170 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 229
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTD 164
+ + RGR +K+ + GI++ R P R ++ T+
Sbjct: 230 ESLFRGRQIKVIPKRTNRPGISTTDRGFP-RARYRARTTN 268
>UNIPROTKB|E1BWJ0 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 OMA:SQAVMKM
EMBL:AADN02034959 EMBL:AADN02034960 EMBL:AADN02034961
EMBL:AADN02034962 EMBL:AADN02034963 IPI:IPI00823214
ProteinModelPortal:E1BWJ0 Ensembl:ENSGALT00000038892
ArrayExpress:E1BWJ0 Uniprot:E1BWJ0
Length = 731
Score = 146 (56.5 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 34/87 (39%), Positives = 55/87 (63%)
Query: 66 IYIGNLSWDITEED--LKKLFSDC-KISSLR-FGTNKETGEFRGYAHVDFSDSLSLSMAL 121
+++ NLS+++T+ + LK+LF C ++S +R +NK G FRGY +V+F D S AL
Sbjct: 639 VFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNK--GTFRGYCYVEFKDEKSALQAL 696
Query: 122 KLDQEVVRGRPVKISCAVPPKKGINSK 148
+D++VV GRP+ +S V K + K
Sbjct: 697 GMDRKVVEGRPMFVSPCVDKNKNPDFK 723
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 140 (54.3 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 30/100 (30%), Positives = 57/100 (57%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K +G +G+A+++FSD S+ +L LD
Sbjct: 174 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 233
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTD 164
+ + RGR +K+ + GI++ R P R ++ T+
Sbjct: 234 ESLFRGRQIKVIPKRTNRPGISTTDRGFP-RARYRARTTN 272
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 140 (54.3 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 30/100 (30%), Positives = 57/100 (57%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K +G +G+A+++FSD S+ +L LD
Sbjct: 174 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 233
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTD 164
+ + RGR +K+ + GI++ R P R ++ T+
Sbjct: 234 ESLFRGRQIKVIPKRTNRPGISTTDRGFP-RARYRARTTN 272
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 140 (54.3 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 30/100 (30%), Positives = 57/100 (57%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K +G +G+A+++FSD S+ +L LD
Sbjct: 174 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 233
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTD 164
+ + RGR +K+ + GI++ R P R ++ T+
Sbjct: 234 ESLFRGRQIKVIPKRTNRPGISTTDRGFP-RARYRARTTN 272
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 140 (54.3 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 30/100 (30%), Positives = 57/100 (57%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K +G +G+A+++FSD S+ +L LD
Sbjct: 174 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 233
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTD 164
+ + RGR +K+ + GI++ R P R ++ T+
Sbjct: 234 ESLFRGRQIKVIPKRTNRPGISTTDRGFP-RARYRARTTN 272
>UNIPROTKB|Q15056 [details] [associations]
symbol:EIF4H "Eukaryotic translation initiation factor 4H"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0019953 "sexual reproduction" evidence=IEA] [GO:0048589
"developmental growth" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006446 "regulation of translational initiation"
evidence=TAS] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=TAS] [GO:0016281 "eukaryotic translation
initiation factor 4F complex" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_17015 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0048471 GO:GO:0019048 GO:GO:0000166
GO:GO:0006446 GO:GO:0016281 Gene3D:3.30.70.330 GO:GO:0003743
EMBL:CH471200 Orphanet:904 eggNOG:COG0724 Reactome:REACT_1762
CTD:7458 HOVERGEN:HBG018193 EMBL:AF045555 EMBL:D26068 EMBL:AK290676
EMBL:BC010021 EMBL:BC021214 EMBL:BC066928 IPI:IPI00014263
IPI:IPI00375127 RefSeq:NP_071496.1 RefSeq:NP_114381.1
UniGene:Hs.520943 ProteinModelPortal:Q15056 SMR:Q15056
IntAct:Q15056 STRING:Q15056 PhosphoSite:Q15056 DMDM:18276665
PaxDb:Q15056 PRIDE:Q15056 DNASU:7458 Ensembl:ENST00000265753
Ensembl:ENST00000353999 Ensembl:ENST00000575843
Ensembl:ENST00000575925 GeneID:7458 KEGG:hsa:7458 UCSC:uc003uad.1
UCSC:uc003uae.1 GeneCards:GC07P073588 HGNC:HGNC:12741 HPA:HPA030542
MIM:603431 neXtProt:NX_Q15056 PharmGKB:PA162384997
HOGENOM:HOG000013063 InParanoid:Q15056 OMA:PRTVSEP
OrthoDB:EOG46DM3S PhylomeDB:Q15056 ChEMBL:CHEMBL1293274
ChiTaRS:EIF4H GenomeRNAi:7458 NextBio:29206 ArrayExpress:Q15056
Bgee:Q15056 CleanEx:HS_EIF4H Genevestigator:Q15056 Uniprot:Q15056
Length = 248
Score = 137 (53.3 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 38/130 (29%), Positives = 62/130 (47%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D I S+R +K+T +F+G+ +V+F + SL AL D
Sbjct: 45 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 104
Query: 127 VVRGRPVKISCAVPPK--KGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVTSNV 184
++ R +++ A K KG + P + R +S G S D NSG +
Sbjct: 105 LLGDRSLRVDIAEGRKQDKGGFGFRKGGPDD-RGMGSSRESRGGWDSRDDFNSGFRDDFL 163
Query: 185 AANAGSGTSD 194
GS D
Sbjct: 164 GGRGGSRPGD 173
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 143 (55.4 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 40/121 (33%), Positives = 61/121 (50%)
Query: 43 PYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETG 101
P K K K+ PK+ + R+ I NLS+ +E+DLK +F + + K G
Sbjct: 98 PKKEPKPKK-----PKVADKKARLIIRNLSFKCSEDDLKTVFGQYGAVLEVNI-PRKPDG 151
Query: 102 EFRGYAHVDFSDSLSLSMALK-LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATS 160
+ RG+A V F + L ALK ++ + ++GR V + AV K N++S S P KR
Sbjct: 152 KMRGFAFVQFKNLLEAGKALKSMNMKEIKGRTVAVDWAVAKDKYKNTQSASAPGEKRPEP 211
Query: 161 K 161
K
Sbjct: 212 K 212
Score = 45 (20.9 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 274 KIRRRTCYECGEKGHLSSACPKKTADQTNSTTIQVEQL 311
KIR+R +KG + S PKK Q NS + ++L
Sbjct: 672 KIRQR------DKGRVKSLPPKKPKPQINSQKQEKQKL 703
>UNIPROTKB|F1Q0B0 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
"protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
Length = 715
Score = 145 (56.1 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 51/218 (23%), Positives = 104/218 (47%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTP---KIVEG 62
GK +GIA I F+TE ++ G+E+DG + + Y K + + D+ G
Sbjct: 431 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLY-YTGEKGQ-SQDYRGGKNSTWSG 488
Query: 63 YNR-IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL 121
++ + + NLS+ TEE L+++F K + ++ N + G+ +GYA ++F+ AL
Sbjct: 489 ESKTLVLSNLSYSATEETLQEVFE--KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 545
Query: 122 K-LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAV 180
++ + GR +++ P +G + +RS PS +++ T ++ + G+V
Sbjct: 546 NSCNKREIEGRAIRLELQGP--RG-SPNARSQPSKTLFVKGLSEDTTEETLKESFD-GSV 601
Query: 181 TSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE 218
+ + + +G+S +D ++ + E GE
Sbjct: 602 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 639
>RGD|1311646 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T-cells 3" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
RGD:1311646 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 EMBL:CH473973
GeneTree:ENSGT00550000074656 InterPro:IPR008669 Pfam:PF05391
CTD:9733 OMA:SQAVMKM OrthoDB:EOG4RXXZG IPI:IPI00371231
RefSeq:NP_001100626.1 UniGene:Rn.101480 Ensembl:ENSRNOT00000000891
GeneID:304582 KEGG:rno:304582 UCSC:RGD:1311646 NextBio:653335
Uniprot:D3ZAS8
Length = 960
Score = 146 (56.5 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 44/176 (25%), Positives = 86/176 (48%)
Query: 3 FPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSD--FTPKIV 60
F + G FRG + F+ E + ++AL LD ++G + + P K+K F
Sbjct: 737 FSNRGDFRGYCYVEFKEEKSAQQALDLDRKNVEGRPMFVSPC-VDKSKNPDFKMFRYSTT 795
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDCK----ISSLRFGTNKETGEFRGYAHVDFSDSLS 116
++++I L + T+E+L+ + CK + LR TN+ G+ +G A+V++ +
Sbjct: 796 LEKHKLFISGLPFSCTKEELEGI---CKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQ 851
Query: 117 LSMA-LKLDQEVVRGRPVKISCAVPPKKGINSKS--RSLPSNKRATSKVTDSAGLG 169
S A LK+D ++ +K++ + PP++ + K R+ P ++ + G G
Sbjct: 852 ASQAVLKMDGMTIKENVIKVAISNPPQRKVPEKPEVRTAPGAPMVPRQMYGARGKG 907
Score = 129 (50.5 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 38/115 (33%), Positives = 61/115 (53%)
Query: 42 QPYKATKAKRTSDFTPKIVEGYNR----IYIGNLSWDITEEDLK--KLFSDC-KISSLR- 93
Q KA KR D PK+ ++ +++ NL + I E ++K LF C ++ +R
Sbjct: 679 QKEKAASLKR--DM-PKVAHDSSKDSVTVFVSNLPYSIEEPEVKLRPLFEACGEVVQIRP 735
Query: 94 FGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPKKGINSK 148
+N+ G+FRGY +V+F + S AL LD++ V GRP+ +S V K + K
Sbjct: 736 IFSNR--GDFRGYCYVEFKEEKSAQQALDLDRKNVEGRPMFVSPCVDKSKNPDFK 788
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 134 (52.2 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 28/86 (32%), Positives = 51/86 (59%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
+Y+GN+ + T +DL+ FS C I+ + +K +G +GYA+++F++ S+ A+ +D
Sbjct: 95 VYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMD 154
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSR 150
+ V RGR +K+ GI+S R
Sbjct: 155 ETVFRGRTIKVLPKRTNMPGISSTDR 180
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 141 (54.7 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 40/130 (30%), Positives = 71/130 (54%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTS--DFTPKIVEGYNRIY 67
+GIA + F +V A+ L G + G+ + +Q +A K + + + K G R+Y
Sbjct: 198 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGTGGPMRLY 257
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LDQ 125
+G+L ++ITE+ L+ +F KI ++ + +TG +GY + FSDS AL+ L+
Sbjct: 258 VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG 317
Query: 126 EVVRGRPVKI 135
+ GRP++I
Sbjct: 318 FELAGRPMRI 327
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 138 (53.6 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 28/89 (31%), Positives = 51/89 (57%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K TG +G+A+++F D S+ +L LD
Sbjct: 165 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALD 224
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLP 153
+ + RGR +K+ + GI++ R P
Sbjct: 225 ESLFRGRQIKVVPKRTNRPGISTTDRGFP 253
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 144 (55.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 51/218 (23%), Positives = 103/218 (47%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTP---KIVEG 62
GK +GIA I F+TE ++ G+E+DG + + Y K + D+ G
Sbjct: 426 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLY-YTGEKGQN-QDYRGGKNSTWSG 483
Query: 63 YNR-IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL 121
++ + + NLS+ TEE L+++F K + ++ N + G+ +GYA ++F+ AL
Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFE--KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 540
Query: 122 K-LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAV 180
++ + GR +++ P +G + +RS PS +++ T ++ + G+V
Sbjct: 541 NSCNKREIEGRAIRLELQGP--RG-SPNARSQPSKTLFVKGLSEDTTEETLKESFD-GSV 596
Query: 181 TSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE 218
+ + + +G+S +D ++ + E GE
Sbjct: 597 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 634
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 144 (55.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 51/218 (23%), Positives = 103/218 (47%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTP---KIVEG 62
GK +GIA I F+TE ++ G+E+DG + + Y K + D+ G
Sbjct: 427 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLY-YTGEKGQN-QDYRGGKNSTWSG 484
Query: 63 YNR-IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL 121
++ + + NLS+ TEE L+++F K + ++ N + G+ +GYA ++F+ AL
Sbjct: 485 ESKTLVLSNLSYSATEETLQEVFE--KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 541
Query: 122 K-LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAV 180
++ + GR +++ P +G + +RS PS +++ T ++ + G+V
Sbjct: 542 NSCNKREIEGRAIRLELQGP--RG-SPNARSQPSKTLFVKGLSEDTTEETLKESFD-GSV 597
Query: 181 TSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE 218
+ + + +G+S +D ++ + E GE
Sbjct: 598 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 635
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 144 (55.7 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 51/218 (23%), Positives = 103/218 (47%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTP---KIVEG 62
GK +GIA I F+TE ++ G+E+DG + + Y K + D+ G
Sbjct: 428 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLY-YTGEKGQN-QDYRGGKNSTWSG 485
Query: 63 YNR-IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL 121
++ + + NLS+ TEE L+++F K + ++ N + G+ +GYA ++F+ AL
Sbjct: 486 ESKTLVLSNLSYSATEETLQEVFE--KATFIKVPQN-QNGKSKGYAFIEFASFEDAKEAL 542
Query: 122 K-LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAV 180
++ + GR +++ P +G + +RS PS +++ T ++ + G+V
Sbjct: 543 NSCNKREIEGRAIRLELQGP--RG-SPNARSQPSKTLFVKGLSEDTTEETLKESFD-GSV 598
Query: 181 TSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE 218
+ + + +G+S +D ++ + E GE
Sbjct: 599 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 636
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 141 (54.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 39/131 (29%), Positives = 72/131 (54%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYN---RI 66
+GIA + F +V A+ L G + G+ + +Q +A K R + + +G + R+
Sbjct: 208 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK-NRLAAMANNLQKGSSGPMRL 266
Query: 67 YIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LD 124
Y+G+L ++ITE+ L+ +F KI ++ + +TG +GY + FSDS AL+ L+
Sbjct: 267 YVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 326
Query: 125 QEVVRGRPVKI 135
+ GRP+++
Sbjct: 327 GFELAGRPMRV 337
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 119 (46.9 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 25/81 (30%), Positives = 49/81 (60%)
Query: 60 VEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLS 118
+ G +Y+GN + TEE+L FS +I+++R ++ETG RG+A ++F++ S
Sbjct: 1 MSGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQ 60
Query: 119 MALK-LDQEVVRGRPVKISCA 138
A++ ++ GRP++++ A
Sbjct: 61 RAVEQMNGAEFNGRPLRVNLA 81
>ZFIN|ZDB-GENE-040718-77 [details] [associations]
symbol:rbm34 "RNA binding motif protein 34"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-77 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K14837 GeneTree:ENSGT00390000011249 CTD:23029
HOGENOM:HOG000060230 HOVERGEN:HBG052167 OMA:KEFGHIE EMBL:BX569779
EMBL:BC075875 IPI:IPI00494733 RefSeq:NP_001002382.1
UniGene:Dr.84194 STRING:Q6DHU2 Ensembl:ENSDART00000039490
GeneID:436655 KEGG:dre:436655 NextBio:20831100 Uniprot:Q6DHU2
Length = 411
Score = 140 (54.3 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 53/214 (24%), Positives = 102/214 (47%)
Query: 13 AIINFRTEGAVKRALALDGSEMD-GLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNL 71
A I F+ E + AL +G E+ G ++++ R S + + I++GNL
Sbjct: 210 AYIVFKEEESATDALKWNGHEIQAGFYIRVD--------RVSQHSKH--DHKRSIFVGNL 259
Query: 72 SWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRG 130
+DI+E L+ F +C I ++R ++++G +G+ +V F S+ +ALKL+ ++
Sbjct: 260 PYDISELPLQNHFQECGNIEAVRLVRDRDSGMGKGFGYVLFESPDSVMLALKLNGSTLQQ 319
Query: 131 RPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSND-ADNSGA--VTSNVAAN 187
R +++ +V KK K + P ++A + T G + +N+G T N
Sbjct: 320 RKIRVKRSV--KK---EKEKKTPPGRKAEGQRTGGGLKGPKQEFRNNTGRKNFTKNPRNK 374
Query: 188 AGSGTSDVTEHIDLSAVSGKIRRRTCYECGEKGH 221
+S E D +A GK +++ ++ +K H
Sbjct: 375 PTQASSFKGEMADPTAKRGKPQKKK-FKHKKKKH 407
>UNIPROTKB|F8W0K0 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021052
ProteinModelPortal:F8W0K0 SMR:F8W0K0 Ensembl:ENST00000551002
ArrayExpress:F8W0K0 Bgee:F8W0K0 Uniprot:F8W0K0
Length = 170
Score = 123 (48.4 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 29/100 (29%), Positives = 52/100 (52%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGE-FRGYAHVDFSDSLSLSMALKLDQ 125
++GNL +D+TEE +K+ F IS++R E +G+ + +F D SL AL L++
Sbjct: 53 FLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE 112
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDS 165
E + R +++ A + + RS ++ S TD+
Sbjct: 113 ESLGNRRIRVDVA-DQAQDKDRDDRSFGRDRNRDSDKTDT 151
>UNIPROTKB|I3LRD5 [details] [associations]
symbol:EIF4H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048589 "developmental growth" evidence=IEA]
[GO:0019953 "sexual reproduction" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063406
CTD:7458 OMA:PRTVSEP EMBL:FP340223 UniGene:Ssc.54702
GeneID:100627717 KEGG:ssc:100627717 RefSeq:NP_001230376.1
Ensembl:ENSSSCT00000024462 Uniprot:I3LRD5
Length = 248
Score = 135 (52.6 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 38/130 (29%), Positives = 62/130 (47%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D I S+R +K+T +F+G+ +V+F + SL AL D
Sbjct: 45 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 104
Query: 127 VVRGRPVKISCAVPPK--KGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVTSNV 184
++ R +++ A K KG + P + R +S G S D NSG +
Sbjct: 105 LLGDRSLRVDIAEGRKQDKGGFGFRKGGPDD-RGMGGSRESRGGWDSRDDFNSGFRDDFL 163
Query: 185 AANAGSGTSD 194
GS D
Sbjct: 164 GGRGGSRPGD 173
>MGI|MGI:1341822 [details] [associations]
symbol:Eif4h "eukaryotic translation initiation factor 4H"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0019953 "sexual
reproduction" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1341822 GO:GO:0048471
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048589 GO:GO:0003743
GO:GO:0019953 eggNOG:COG0724 EMBL:AF289664
GeneTree:ENSGT00530000063406 CTD:7458 HOVERGEN:HBG018193
HOGENOM:HOG000013063 OMA:PRTVSEP OrthoDB:EOG46DM3S ChiTaRS:EIF4H
EMBL:AF139987 EMBL:BC014796 IPI:IPI00124742 IPI:IPI00222560
RefSeq:NP_291039.1 UniGene:Mm.27955 PDB:2DNG PDBsum:2DNG
ProteinModelPortal:Q9WUK2 SMR:Q9WUK2 STRING:Q9WUK2
PhosphoSite:Q9WUK2 PaxDb:Q9WUK2 PRIDE:Q9WUK2
Ensembl:ENSMUST00000036125 GeneID:22384 KEGG:mmu:22384
InParanoid:Q9WUK2 EvolutionaryTrace:Q9WUK2 NextBio:302749
PMAP-CutDB:Q9WUK2 Bgee:Q9WUK2 CleanEx:MM_EIF4H
Genevestigator:Q9WUK2 GermOnline:ENSMUSG00000040731 Uniprot:Q9WUK2
Length = 248
Score = 135 (52.6 bits), Expect = 9.1e-07, P = 9.1e-07
Identities = 38/130 (29%), Positives = 62/130 (47%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D I S+R +K+T +F+G+ +V+F + SL AL D
Sbjct: 45 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 104
Query: 127 VVRGRPVKISCAVPPK--KGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVTSNV 184
++ R +++ A K KG + P + R +S G S D NSG +
Sbjct: 105 LLGDRSLRVDIAEGRKQDKGGFGFRKGGPDD-RGMGGSRESRGGWDSRDDFNSGYRDDFL 163
Query: 185 AANAGSGTSD 194
GS D
Sbjct: 164 GGRGGSRPGD 173
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 143 (55.4 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 48/192 (25%), Positives = 93/192 (48%)
Query: 5 DTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGY 63
+TG RGIA I F+TE ++AL GS++ G + I + K+++ P +
Sbjct: 412 NTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSI-IVDFTGDKSRQGGRGAPSASKV- 469
Query: 64 NRIYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK- 122
+ + NL++ +E+ L+ +F K S+R N G +GYA V+F + AL+
Sbjct: 470 --LVVNNLAFSASEDSLQSVFE--KAVSIRIPQNN--GRPKGYAFVEFENVEDSKEALEN 523
Query: 123 LDQEVVRGRPVKISCAVPPK-KGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVT 181
+ + GR +++ + + +G + S P+ ++D T D+ + GA+
Sbjct: 524 CNNTDIEGRSIRLEYSQNDRERGGGGRGNSGPTKTLFVKGLSDDTTDQTLKDSFD-GAIA 582
Query: 182 SNVAANAGSGTS 193
+ +A + +G+S
Sbjct: 583 ARIATDRDTGSS 594
Score = 117 (46.2 bits), Expect = 0.00074, P = 0.00074
Identities = 44/165 (26%), Positives = 75/165 (45%)
Query: 7 GKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNR- 65
G + ++F +E +++AL L+G ++ G QP K KA+ + E R
Sbjct: 327 GGTKKFGYVDFASEEELQKALELNGKKLLG-----QPVKLDKARSKENSQENKKERDART 381
Query: 66 IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQ 125
+++ NL + IT++DL+++F + G TG RG A+++F AL+ Q
Sbjct: 382 LFVKNLPYSITQDDLREIFDQAVDIRVPMGN---TGTSRGIAYIEFKTEAIAEKALEEAQ 438
Query: 126 -EVVRGRPVKISCAVPPKK----GINSKSRSLPSNKRATSKVTDS 165
V+GR + + + G S S+ L N A S DS
Sbjct: 439 GSDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSASEDS 483
>UNIPROTKB|J9NZ20 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AAEX03015129
RefSeq:XP_534835.1 ProteinModelPortal:J9NZ20
Ensembl:ENSCAFT00000049381 GeneID:477640 KEGG:cfa:477640
Uniprot:J9NZ20
Length = 217
Score = 89 (36.4 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLS-LSMALKL 123
+Y+ NL + +T DL ++FS K+ + +K+T + +G A + F D S L+ +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71
Query: 124 DQEVVRGRPVKISCAV 139
+ + + GR +K S A+
Sbjct: 72 NNKQLFGRVIKASIAI 87
Score = 86 (35.3 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 280 CYECGEKGHLSSACPK 295
CYECGE GHLS ACPK
Sbjct: 107 CYECGESGHLSYACPK 122
Score = 78 (32.5 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 19/36 (52%), Positives = 20/36 (55%)
Query: 199 IDLSAVSGKIRRRT------CYECGEKGHLSSACLK 228
ID + IRRR CYECGE GHLS AC K
Sbjct: 87 IDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPK 122
>MGI|MGI:1914447 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
MGI:MGI:1914447 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:AB095989 EMBL:AK012852 EMBL:AK170136
EMBL:BC058368 IPI:IPI00112291 IPI:IPI00798500 RefSeq:NP_080301.1
UniGene:Mm.293181 ProteinModelPortal:Q9CZ96 SMR:Q9CZ96
STRING:Q9CZ96 PhosphoSite:Q9CZ96 PRIDE:Q9CZ96
Ensembl:ENSMUST00000076070 Ensembl:ENSMUST00000162160 GeneID:67197
KEGG:mmu:67197 UCSC:uc007xiu.1 UCSC:uc007xiv.1 InParanoid:Q9CZ96
ChiTaRS:ZCRB1 NextBio:323848 Bgee:Q9CZ96 CleanEx:MM_ZCRB1
Genevestigator:Q9CZ96 GermOnline:ENSMUSG00000022635 Uniprot:Q9CZ96
Length = 217
Score = 89 (36.4 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLS-LSMALKL 123
+Y+ NL + +T DL ++FS K+ + +K+T + +G A + F D S L+ +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71
Query: 124 DQEVVRGRPVKISCAV 139
+ + + GR +K S A+
Sbjct: 72 NNKQLFGRVIKASIAI 87
Score = 86 (35.3 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 280 CYECGEKGHLSSACPK 295
CYECGE GHLS ACPK
Sbjct: 107 CYECGESGHLSYACPK 122
Score = 78 (32.5 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 19/36 (52%), Positives = 20/36 (55%)
Query: 199 IDLSAVSGKIRRRT------CYECGEKGHLSSACLK 228
ID + IRRR CYECGE GHLS AC K
Sbjct: 87 IDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPK 122
>RGD|1309851 [details] [associations]
symbol:Zcrb1 "zinc finger CCHC-type and RNA binding motif 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
RGD:1309851 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:P62995 CTD:85437
HOGENOM:HOG000007632 KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW
eggNOG:NOG270852 EMBL:BC099747 IPI:IPI00211761
RefSeq:NP_001030112.1 UniGene:Rn.136969 ProteinModelPortal:Q499V6
SMR:Q499V6 STRING:Q499V6 Ensembl:ENSRNOT00000006780 GeneID:362990
KEGG:rno:362990 InParanoid:Q499V6 NextBio:682050
Genevestigator:Q499V6 GermOnline:ENSRNOG00000004996 Uniprot:Q499V6
Length = 217
Score = 89 (36.4 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLS-LSMALKL 123
+Y+ NL + +T DL ++FS K+ + +K+T + +G A + F D S L+ +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRAI 71
Query: 124 DQEVVRGRPVKISCAV 139
+ + + GR +K S A+
Sbjct: 72 NNKQLFGRVIKASIAI 87
Score = 86 (35.3 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 280 CYECGEKGHLSSACPK 295
CYECGE GHLS ACPK
Sbjct: 107 CYECGESGHLSYACPK 122
Score = 78 (32.5 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 19/36 (52%), Positives = 20/36 (55%)
Query: 199 IDLSAVSGKIRRRT------CYECGEKGHLSSACLK 228
ID + IRRR CYECGE GHLS AC K
Sbjct: 87 IDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPK 122
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 140 (54.3 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 39/131 (29%), Positives = 71/131 (54%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYN---RI 66
+GIA + F +V A+ L G + G+ + +Q +A K R + + +G R+
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK-NRLAAMANNLQKGNGGPMRL 265
Query: 67 YIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LD 124
Y+G+L ++ITE+ L+ +F KI ++ + +TG +GY + FSDS AL+ L+
Sbjct: 266 YVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 325
Query: 125 QEVVRGRPVKI 135
+ GRP+++
Sbjct: 326 GFELAGRPMRV 336
>ASPGD|ASPL0000053752 [details] [associations]
symbol:AN1340 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 EMBL:AACD01000018
OrthoDB:EOG44N22T RefSeq:XP_658944.1 ProteinModelPortal:Q5BDP0
SMR:Q5BDP0 STRING:Q5BDP0 EnsemblFungi:CADANIAT00001272
GeneID:2877113 KEGG:ani:AN1340.2 OMA:SRACCYG Uniprot:Q5BDP0
Length = 187
Score = 128 (50.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 36/131 (27%), Positives = 72/131 (54%)
Query: 22 AVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNR-IYIGNLSWDITEEDL 80
A+KR +A EM+ K++ +AT +++ + R I++GN+ + + E++
Sbjct: 29 AMKRRVA----EMESEAAKLREMQATLDQQSESLKEDKEDIDARSIFVGNVDYGASPEEI 84
Query: 81 KKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAV 139
+ F C I+ + +K TG+ +GYA+V+F++ ++ AL L++ V RGR +K+
Sbjct: 85 QAHFQSCGSINRVTILLDKFTGQPKGYAYVEFAEPSLVAQALVLNESVFRGRNLKVVPKR 144
Query: 140 PPKKGINSKSR 150
G++S+ R
Sbjct: 145 TNLPGMSSRGR 155
>UNIPROTKB|E2QXZ2 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 GeneTree:ENSGT00550000074656
InterPro:IPR008669 Pfam:PF05391 OMA:SQAVMKM EMBL:AAEX03014754
Ensembl:ENSCAFT00000018071 Uniprot:E2QXZ2
Length = 1082
Score = 144 (55.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 41/176 (23%), Positives = 86/176 (48%)
Query: 3 FPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSD--FTPKIV 60
F + G FRG + F+ E + +AL LD ++G + + P K+K F
Sbjct: 858 FSNRGDFRGYCYVEFKEEKSALQALELDRKTVEGRPMFVSPC-VDKSKHPDFKVFRYSTA 916
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDCK----ISSLRFGTNKETGEFRGYAHVDFSDSLS 116
+++++ L + T+E+L+++ CK + +R TN+ G+ +G A+V++ +
Sbjct: 917 LEKHKLFVSGLPFSCTKEELEEI---CKAHGTVKDIRLVTNR-AGKPKGLAYVEYENESQ 972
Query: 117 LSMA-LKLDQEVVRGRPVKISCAVPPKKGINSK--SRSLPSNKRATSKVTDSAGLG 169
S A LK+D ++ +K++ + PP++ + K ++ P ++ + G G
Sbjct: 973 ASQAVLKMDGMTIKENVIKVAISNPPQRKVPEKPETKKAPGGGMVPRQIYGARGKG 1028
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 66 IYIGNLSWDITEEDLK--KLFSDC-KISSLR-FGTNKETGEFRGYAHVDFSDSLSLSMAL 121
+++ NL + + E ++K LF C +++ +R +N+ G+FRGY +V+F + S AL
Sbjct: 825 VFVSNLPYSMDEPEVKLRPLFEACGEVTEIRPIFSNR--GDFRGYCYVEFKEEKSALQAL 882
Query: 122 KLDQEVVRGRPVKISCAVPPKK 143
+LD++ V GRP+ +S V K
Sbjct: 883 ELDRKTVEGRPMFVSPCVDKSK 904
>UNIPROTKB|E2RQG8 [details] [associations]
symbol:EIF4H "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 OMA:PNMDFRE EMBL:AAEX03004233
Ensembl:ENSCAFT00000019083 Uniprot:E2RQG8
Length = 251
Score = 134 (52.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 38/130 (29%), Positives = 62/130 (47%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D I S+R +K+T +F+G+ +V+F + SL AL D
Sbjct: 48 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 107
Query: 127 VVRGRPVKISCAVPPK--KGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVTSNV 184
++ R +++ A K KG + P + R +S G S D NSG +
Sbjct: 108 LLGDRSLRVDIAEGRKQDKGGFGFRKGGPDD-RGMGGPGESRGGWDSRDDFNSGFRDDFL 166
Query: 185 AANAGSGTSD 194
GS D
Sbjct: 167 GGRGGSRPGD 176
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 117 (46.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-L 123
+Y+G++S++ TE+DL++LFS ++S+ T+ ETG +G +V A++ L
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 124 DQEVVRGRPVKISCAVPPKKGINSKSR 150
D ++R R + +S A P K+ R
Sbjct: 65 DGALLRNRVITVSVARPQKQATRPAPR 91
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 117 (46.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 27/87 (31%), Positives = 49/87 (56%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-L 123
+Y+G++S++ TE+DL++LFS ++S+ T+ ETG +G +V A++ L
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 124 DQEVVRGRPVKISCAVPPKKGINSKSR 150
D ++R R + +S A P K+ R
Sbjct: 65 DGALLRNRVITVSVARPQKQATRPAPR 91
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 135 (52.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 38/112 (33%), Positives = 58/112 (51%)
Query: 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVE 61
T P TG+ RG + F+ +V R L L ++DG + + KA K K PK
Sbjct: 63 TDPLTGRSRGFGFVLFKDAESVDRVLELTEHKLDGKLIDPKRAKAIKGKEP----PK--- 115
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFS 112
++++G LS DITEE L++ F +I S+ T+ +T E RG+ V F+
Sbjct: 116 ---KVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFA 164
>UNIPROTKB|B7ZKM0 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AC008119
InterPro:IPR008669 Pfam:PF05391 UniGene:Hs.584842 HGNC:HGNC:16860
HOVERGEN:HBG053888 ChiTaRS:SART3 EMBL:AC010206 EMBL:BC143253
IPI:IPI00719256 SMR:B7ZKM0 STRING:B7ZKM0 Ensembl:ENST00000431469
UCSC:uc010swx.1 Uniprot:B7ZKM0
Length = 927
Score = 142 (55.0 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 44/178 (24%), Positives = 88/178 (49%)
Query: 3 FPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFT----PK 58
F + G FRG + F+ E + +AL +D ++G + + P K+K DF
Sbjct: 703 FSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPC-VDKSKNP-DFKVFRYST 760
Query: 59 IVEGYNRIYIGNLSWDITEEDLKKLFSDCK----ISSLRFGTNKETGEFRGYAHVDFSDS 114
+E + +++I L + T+E+L+++ CK + LR TN+ G+ +G A+V++ +
Sbjct: 761 SLEKH-KLFISGLPFSCTKEELEEI---CKAHGTVKDLRLVTNR-AGKPKGLAYVEYENE 815
Query: 115 LSLSMA-LKLDQEVVRGRPVKISCAVPPKKGINSK--SRSLPSNKRATSKVTDSAGLG 169
S A +K+D ++ +K++ + PP++ + K +R P + + G G
Sbjct: 816 SQASQAVMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLPQTYGARGKG 873
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 41/127 (32%), Positives = 68/127 (53%)
Query: 42 QPYKATKAKRTSDFTPKIVEGYNR----IYIGNLSWDITEED--LKKLFSDC-KISSLR- 93
Q KA KR D PK++ ++ +++ NL + + E D L+ LF C ++ +R
Sbjct: 645 QKEKAASLKR--DM-PKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRP 701
Query: 94 FGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPKKGINSK----S 149
+N+ G+FRGY +V+F + S AL++D++ V GRP+ +S V K + K S
Sbjct: 702 IFSNR--GDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYS 759
Query: 150 RSLPSNK 156
SL +K
Sbjct: 760 TSLEKHK 766
>UNIPROTKB|Q15020 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00386 EMBL:AB020880 GO:GO:0043231
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 EMBL:AF387506 EMBL:D63879 EMBL:AK290209
EMBL:BC032601 EMBL:BC041638 EMBL:BC093784 EMBL:BC103706
EMBL:BC111983 IPI:IPI00006025 IPI:IPI00383381 IPI:IPI01022779
RefSeq:NP_055521.1 UniGene:Hs.584842 PDB:2DO4 PDBsum:2DO4
ProteinModelPortal:Q15020 SMR:Q15020 IntAct:Q15020
MINT:MINT-2867335 STRING:Q15020 PhosphoSite:Q15020 DMDM:74762140
PaxDb:Q15020 PeptideAtlas:Q15020 PRIDE:Q15020
Ensembl:ENST00000228284 Ensembl:ENST00000546611
Ensembl:ENST00000546728 GeneID:9733 KEGG:hsa:9733 UCSC:uc001tmy.1
UCSC:uc001tnb.3 CTD:9733 GeneCards:GC12M108915 HGNC:HGNC:16860
HPA:HPA044322 MIM:175900 MIM:611684 neXtProt:NX_Q15020
Orphanet:79152 PharmGKB:PA34948 HOGENOM:HOG000063708
HOVERGEN:HBG053888 InParanoid:Q15020 OMA:SQAVMKM OrthoDB:EOG4RXXZG
PhylomeDB:Q15020 ChiTaRS:SART3 EvolutionaryTrace:Q15020
GenomeRNAi:9733 NextBio:36616 ArrayExpress:Q15020 Bgee:Q15020
CleanEx:HS_SART3 Genevestigator:Q15020 GermOnline:ENSG00000075856
Uniprot:Q15020
Length = 963
Score = 142 (55.0 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 44/178 (24%), Positives = 88/178 (49%)
Query: 3 FPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFT----PK 58
F + G FRG + F+ E + +AL +D ++G + + P K+K DF
Sbjct: 739 FSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPC-VDKSKNP-DFKVFRYST 796
Query: 59 IVEGYNRIYIGNLSWDITEEDLKKLFSDCK----ISSLRFGTNKETGEFRGYAHVDFSDS 114
+E + +++I L + T+E+L+++ CK + LR TN+ G+ +G A+V++ +
Sbjct: 797 SLEKH-KLFISGLPFSCTKEELEEI---CKAHGTVKDLRLVTNR-AGKPKGLAYVEYENE 851
Query: 115 LSLSMA-LKLDQEVVRGRPVKISCAVPPKKGINSK--SRSLPSNKRATSKVTDSAGLG 169
S A +K+D ++ +K++ + PP++ + K +R P + + G G
Sbjct: 852 SQASQAVMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPGGPMLLPQTYGARGKG 909
Score = 131 (51.2 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 41/127 (32%), Positives = 68/127 (53%)
Query: 42 QPYKATKAKRTSDFTPKIVEGYNR----IYIGNLSWDITEED--LKKLFSDC-KISSLR- 93
Q KA KR D PK++ ++ +++ NL + + E D L+ LF C ++ +R
Sbjct: 681 QKEKAASLKR--DM-PKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRP 737
Query: 94 FGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPKKGINSK----S 149
+N+ G+FRGY +V+F + S AL++D++ V GRP+ +S V K + K S
Sbjct: 738 IFSNR--GDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYS 795
Query: 150 RSLPSNK 156
SL +K
Sbjct: 796 TSLEKHK 802
>UNIPROTKB|G4N5M5 [details] [associations]
symbol:MGG_05264 "Translation initiation factor 4B"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CM001233 Gene3D:3.30.70.330 GO:GO:0003743
KO:K03258 RefSeq:XP_003712822.1 EnsemblFungi:MGG_05264T0
GeneID:2675531 KEGG:mgr:MGG_05264 Uniprot:G4N5M5
Length = 563
Score = 139 (54.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 29/85 (34%), Positives = 50/85 (58%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
++GNLS+D T E + F+ C++ S+R ++E +G+ + +F+ + L AL D +
Sbjct: 85 HLGNLSYDATNETVTDFFAACEVVSVRIVEDREQQRPKGFGYAEFATAEGLQKALNFDGD 144
Query: 127 VVRGRPVKISCAVPPKKGINSKSRS 151
+GR ++I A PPK NS+ RS
Sbjct: 145 SFQGRVIRIRIADPPK---NSEGRS 166
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 24/86 (27%), Positives = 51/86 (59%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
+Y+GN+ + +T E+L+ F+ C ++ + +K TG +G+A+++FS+ + AL L+
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLN 116
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSR 150
++ RP+K++ P + + SR
Sbjct: 117 GSMLHERPLKVT---PKRTNVPGMSR 139
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 140 (54.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 52/217 (23%), Positives = 104/217 (47%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPK--IVEGY 63
G+ +GIA I F++E ++ L G+E+DG + + Y K +R + T K G
Sbjct: 430 GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY-YTGEKGQR-QERTGKNSTWSGE 487
Query: 64 NR-IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
++ + + NLS+ TEE L+++F K + ++ N G+ +GYA ++F+ AL
Sbjct: 488 SKTLVLSNLSYSATEETLQEVFE--KATFIKVPQNPH-GKSKGYAFIEFASFEDAKEALN 544
Query: 123 LDQEV-VRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVT 181
++ + GR +++ P +G + +RS PS +++ T ++ G+V
Sbjct: 545 SCNKMEIEGRTIRLELQGP--RG-SPNARSQPSKTLFVKGLSEDTTEETLKESFE-GSVR 600
Query: 182 SNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE 218
+ + + +G+S +D ++ + E GE
Sbjct: 601 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 637
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 140 (54.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 52/217 (23%), Positives = 104/217 (47%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPK--IVEGY 63
G+ +GIA I F++E ++ L G+E+DG + + Y K +R + T K G
Sbjct: 431 GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY-YTGEKGQR-QERTGKNSTWSGE 488
Query: 64 NR-IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
++ + + NLS+ TEE L+++F K + ++ N G+ +GYA ++F+ AL
Sbjct: 489 SKTLVLSNLSYSATEETLQEVFE--KATFIKVPQNPH-GKSKGYAFIEFASFEDAKEALN 545
Query: 123 LDQEV-VRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVT 181
++ + GR +++ P +G + +RS PS +++ T ++ G+V
Sbjct: 546 SCNKMEIEGRTIRLELQGP--RG-SPNARSQPSKTLFVKGLSEDTTEETLKESFE-GSVR 601
Query: 182 SNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE 218
+ + + +G+S +D ++ + E GE
Sbjct: 602 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 638
>UNIPROTKB|Q8TBF4 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IC]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471111 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GO:GO:0005689 CTD:85437 HOGENOM:HOG000007632
KO:K13154 OMA:RXVTIMK OrthoDB:EOG4GXFNW eggNOG:NOG270852
EMBL:AB062361 EMBL:BC010177 EMBL:BC022543 EMBL:BK005200
IPI:IPI00154614 RefSeq:NP_149105.3 UniGene:Hs.496279 PDB:2E5H
PDBsum:2E5H ProteinModelPortal:Q8TBF4 SMR:Q8TBF4 STRING:Q8TBF4
PhosphoSite:Q8TBF4 DMDM:158931154 PRIDE:Q8TBF4 DNASU:85437
Ensembl:ENST00000266529 GeneID:85437 KEGG:hsa:85437 UCSC:uc001rmz.3
GeneCards:GC12M042705 HGNC:HGNC:29620 HPA:HPA038864 MIM:610750
neXtProt:NX_Q8TBF4 PharmGKB:PA143485674 InParanoid:Q8TBF4
PhylomeDB:Q8TBF4 EvolutionaryTrace:Q8TBF4 GenomeRNAi:85437
NextBio:76004 ArrayExpress:Q8TBF4 Bgee:Q8TBF4 CleanEx:HS_ZCRB1
Genevestigator:Q8TBF4 GermOnline:ENSG00000139168 Uniprot:Q8TBF4
Length = 217
Score = 86 (35.3 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 280 CYECGEKGHLSSACPK 295
CYECGE GHLS ACPK
Sbjct: 107 CYECGESGHLSYACPK 122
Score = 86 (35.3 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-L 123
+Y+ NL + +T DL ++FS K+ + +K+T + +G A + F D S + +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAI 71
Query: 124 DQEVVRGRPVKISCAV 139
+ + + GR +K S A+
Sbjct: 72 NNKQLFGRVIKASIAI 87
Score = 78 (32.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 19/36 (52%), Positives = 20/36 (55%)
Query: 199 IDLSAVSGKIRRRT------CYECGEKGHLSSACLK 228
ID + IRRR CYECGE GHLS AC K
Sbjct: 87 IDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPK 122
>UNIPROTKB|E1BZH4 [details] [associations]
symbol:LOC100859865 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019953
"sexual reproduction" evidence=IEA] [GO:0048589 "developmental
growth" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063406
OMA:PRTVSEP EMBL:AADN02026007 IPI:IPI00604206 RefSeq:XP_003642445.1
Ensembl:ENSGALT00000001998 GeneID:100859865 KEGG:gga:100859865
Uniprot:E1BZH4
Length = 254
Score = 132 (51.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 36/128 (28%), Positives = 61/128 (47%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D + S+R +KET +F+G+ +V+F + SL AL D
Sbjct: 43 YVGNLPFNTVQGDIDAIFKDLSVRSVRLVRDKETDKFKGFCYVEFDEVESLKEALTYDGA 102
Query: 127 VVRGRPVKISCAVPPK--KGINSKSRSLPSNKRATSKVTDSAGLG-TSNDADNSGAVTSN 183
++ R +++ A K KG + P ++ +S G G S D SG +
Sbjct: 103 LLGDRSLRVDIAEGRKQDKGGFGFRKGGPDDRGMGGGSRESRGGGWDSRDDFGSGFKDDD 162
Query: 184 VAANAGSG 191
G G
Sbjct: 163 FLGGRGRG 170
>MGI|MGI:1858230 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T cells 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
MGI:MGI:1858230 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 HOGENOM:HOG000063708 HOVERGEN:HBG053888
OMA:SQAVMKM OrthoDB:EOG4RXXZG ChiTaRS:SART3 EMBL:AF172722
EMBL:AK053828 EMBL:AK129067 EMBL:AK086398 EMBL:BC036350
EMBL:BC057156 IPI:IPI00458854 IPI:IPI00471258 RefSeq:NP_058622.1
UniGene:Mm.29594 ProteinModelPortal:Q9JLI8 SMR:Q9JLI8 STRING:Q9JLI8
PhosphoSite:Q9JLI8 PaxDb:Q9JLI8 PRIDE:Q9JLI8
Ensembl:ENSMUST00000019118 GeneID:53890 KEGG:mmu:53890
UCSC:uc008yym.1 InParanoid:Q9JLI8 NextBio:310779 Bgee:Q9JLI8
Genevestigator:Q9JLI8 GermOnline:ENSMUSG00000018974 Uniprot:Q9JLI8
Length = 962
Score = 141 (54.7 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 44/176 (25%), Positives = 85/176 (48%)
Query: 3 FPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSD--FTPKIV 60
F + G FRG + F E + ++AL LD ++G + + P K+K F
Sbjct: 739 FSNRGDFRGYCYVEFGEEKSAQQALELDRKIVEGRPMFVSPC-VDKSKNPDFKVFRYSTT 797
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDCK----ISSLRFGTNKETGEFRGYAHVDFSDSLS 116
++++I L + T+E+L+ + CK + LR TN+ G+ +G A+V++ +
Sbjct: 798 LEKHKLFISGLPFSCTKEELEDI---CKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQ 853
Query: 117 LSMA-LKLDQEVVRGRPVKISCAVPPKKGINSKS--RSLPSNKRATSKVTDSAGLG 169
S A +K+D +R +K++ + PP++ + K R+ P ++ + G G
Sbjct: 854 ASQAVMKMDGMTIRENVIKVAISNPPQRKVPEKPEVRTAPGAPMLPRQMYGARGKG 909
Score = 139 (54.0 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 45/147 (30%), Positives = 78/147 (53%)
Query: 18 RTEGAVK--RALAL-DGSEMDG--LFLKIQPYKATKAKRTS---DFTPKIVEGYNR---- 65
RTE ++ A A+ + +E+ G L + + P K K S D PK+ ++
Sbjct: 647 RTENSLASGEASAMKEETELSGKCLTIDVGPPSKQKEKAASLKRDM-PKVAHDSSKDSVT 705
Query: 66 IYIGNLSWDITEEDLK--KLFSDC-KISSLR-FGTNKETGEFRGYAHVDFSDSLSLSMAL 121
+++ NL + I E ++K LF C ++ +R +N+ G+FRGY +V+F + S AL
Sbjct: 706 VFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNR--GDFRGYCYVEFGEEKSAQQAL 763
Query: 122 KLDQEVVRGRPVKISCAVPPKKGINSK 148
+LD+++V GRP+ +S V K + K
Sbjct: 764 ELDRKIVEGRPMFVSPCVDKSKNPDFK 790
>UNIPROTKB|H7BY16 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
Length = 297
Score = 112 (44.5 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 39/170 (22%), Positives = 83/170 (48%)
Query: 51 RTSDFTPKIVEGYNR-IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHV 109
RT+ T + V G ++ + + NLS+ TEE L+++F K + ++ N + G+ +GYA +
Sbjct: 97 RTTSRTLQHVLGESKTLVLSNLSYSATEETLQEVFE--KATFIKVPQN-QNGKSKGYAFI 153
Query: 110 DFSDSLSLSMALK-LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGL 168
+F+ AL ++ + GR +++ P +G + +RS PS +++
Sbjct: 154 EFASFEDAKEALNSCNKREIEGRAIRLELQGP--RG-SPNARSQPSKTLFVKGLSEDTTE 210
Query: 169 GTSNDADNSGAVTSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE 218
T ++ + G+V + + + +G+S +D ++ + E GE
Sbjct: 211 ETLKESFD-GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 259
Score = 112 (44.5 bits), Expect = 0.00069, P = 0.00069
Identities = 37/140 (26%), Positives = 67/140 (47%)
Query: 7 GKFRGIAIINFRTEGAVKRAL-ALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNR 65
GK +G A I F + K AL + + E++G ++++ + + + P
Sbjct: 145 GKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE-LQGPRGSPNARSQPS-----KT 198
Query: 66 IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LD 124
+++ LS D TEE LK+ F D + + R T++ETG +G+ VDF+ A + ++
Sbjct: 199 LFVKGLSEDTTEETLKESF-DGSVRA-RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 256
Query: 125 QEVVRGRPVKISCAVPPKKG 144
+ G V + A P +G
Sbjct: 257 DGEIDGNKVTLDWAKPKGEG 276
Score = 61 (26.5 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAK 50
GK +GIA I F+TE ++ G+E+DG + + Y K +
Sbjct: 27 GKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLY-YTGEKGQ 70
>UNIPROTKB|I3LCY5 [details] [associations]
symbol:LOC100525398 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:FP102571
Ensembl:ENSSSCT00000023360 Uniprot:I3LCY5
Length = 295
Score = 133 (51.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 29/96 (30%), Positives = 53/96 (55%)
Query: 56 TPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDS 114
T K+ + +Y+GN+ ++ T +L+ F+ C +I + +K +G +GYA+++F+
Sbjct: 154 TEKVEADHRSVYVGNVDYEGTARELEAYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATE 213
Query: 115 LSLSMALKLDQEVVRGRPVKISCAVPPKKGINSKSR 150
S A++LD V RGR +K+ GI+S R
Sbjct: 214 SSAQAAVELDNSVFRGRVIKVLPKRTNFPGISSTDR 249
>UNIPROTKB|E1BTK3 [details] [associations]
symbol:ZCRB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GO:GO:0005689 GeneTree:ENSGT00600000084414
CTD:85437 KO:K13154 OMA:RXVTIMK EMBL:AADN02010031 IPI:IPI00592809
RefSeq:XP_416034.1 ProteinModelPortal:E1BTK3
Ensembl:ENSGALT00000015532 GeneID:417791 KEGG:gga:417791
NextBio:20821039 Uniprot:E1BTK3
Length = 216
Score = 86 (35.3 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-L 123
+Y+ NL + +T DL ++FS K+ + +K+T + +G A + F D S + L
Sbjct: 12 VYVSNLPFALTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKESAQNCSRAL 71
Query: 124 DQEVVRGRPVKISCAV 139
+ + + GR +K S A+
Sbjct: 72 NNKQLFGRVIKASIAI 87
Score = 85 (35.0 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 280 CYECGEKGHLSSACPK 295
CYECGE GHLS ACPK
Sbjct: 107 CYECGEAGHLSYACPK 122
Score = 77 (32.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 19/36 (52%), Positives = 20/36 (55%)
Query: 199 IDLSAVSGKIRRRT------CYECGEKGHLSSACLK 228
ID + IRRR CYECGE GHLS AC K
Sbjct: 87 IDNGRAAEFIRRRNYFDKSKCYECGEAGHLSYACPK 122
>UNIPROTKB|Q56JZ7 [details] [associations]
symbol:ZCRB1 "Zinc finger CCHC-type and RNA-binding
motif-containing protein 1" species:9913 "Bos taurus" [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:4.10.60.10 eggNOG:COG0724 HOVERGEN:HBG107480 GO:GO:0005689
GeneTree:ENSGT00600000084414 HSSP:Q7YZ92 EMBL:AY911330
EMBL:BC109899 IPI:IPI00690660 RefSeq:NP_001020489.1
UniGene:Bt.48372 ProteinModelPortal:Q56JZ7 SMR:Q56JZ7 STRING:Q56JZ7
Ensembl:ENSBTAT00000025452 GeneID:504536 KEGG:bta:504536 CTD:85437
HOGENOM:HOG000007632 InParanoid:Q56JZ7 KO:K13154 OMA:RXVTIMK
OrthoDB:EOG4GXFNW NextBio:20866714 Uniprot:Q56JZ7
Length = 217
Score = 86 (35.3 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 280 CYECGEKGHLSSACPK 295
CYECGE GHLS ACPK
Sbjct: 107 CYECGESGHLSYACPK 122
Score = 85 (35.0 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-L 123
+Y+ NL + +T DL ++FS K+ + +K+T +G A + F D S + +
Sbjct: 12 VYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTRAI 71
Query: 124 DQEVVRGRPVKISCAV 139
+ + + GR +K S A+
Sbjct: 72 NNKQLFGRVIKASIAI 87
Score = 78 (32.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 19/36 (52%), Positives = 20/36 (55%)
Query: 199 IDLSAVSGKIRRRT------CYECGEKGHLSSACLK 228
ID + IRRR CYECGE GHLS AC K
Sbjct: 87 IDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACPK 122
>ZFIN|ZDB-GENE-010328-19 [details] [associations]
symbol:eif4h "eukaryotic translation initiation
factor 4h" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-010328-19 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG018193
HOGENOM:HOG000013063 OrthoDB:EOG46DM3S eggNOG:NOG240551
EMBL:BC065640 IPI:IPI00481882 UniGene:Dr.76638
ProteinModelPortal:Q6P0F5 SMR:Q6P0F5 STRING:Q6P0F5 PRIDE:Q6P0F5
InParanoid:Q6P0F5 NextBio:20816803 ArrayExpress:Q6P0F5 Bgee:Q6P0F5
Uniprot:Q6P0F5
Length = 263
Score = 131 (51.2 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 32/114 (28%), Positives = 55/114 (48%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D + S+R +KET +F+G+ +V+F D SL AL D
Sbjct: 47 YVGNLPFNTVQGDIDAIFRDLSVRSVRLVRDKETDKFKGFCYVEFDDLESLKEALTYDGA 106
Query: 127 VVRGRPVKISCAVPPK--KGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSG 178
++ R +++ A + +G R S+ G + D D SG
Sbjct: 107 LLGDRSLRVDIAEGRRQERGGGGFGFRKDDRGRGGSRGARGGGRDSREDFDQSG 160
>TAIR|locus:2075860 [details] [associations]
symbol:U11/U12-31K "U11/U12-31K" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0051302
"regulation of cell division" evidence=IMP] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 EMBL:CP002686 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011560
GO:GO:0030529 Gene3D:4.10.60.10 GO:GO:0000398 GO:GO:0032502
GO:GO:0051302 HSSP:O08583 KO:K13154 OMA:YRYSSVA EMBL:BT015938
EMBL:BT021922 IPI:IPI00529628 RefSeq:NP_187651.1 UniGene:At.39936
ProteinModelPortal:Q9CAE4 SMR:Q9CAE4 STRING:Q9CAE4
EnsemblPlants:AT3G10400.1 GeneID:820203 KEGG:ath:AT3G10400
TAIR:At3g10400 InParanoid:Q9CAE4 PhylomeDB:Q9CAE4
ProtClustDB:CLSN2684009 Genevestigator:Q9CAE4 Uniprot:Q9CAE4
Length = 261
Score = 93 (37.8 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 25/101 (24%), Positives = 49/101 (48%)
Query: 40 KIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNK 98
K QP + K+ + + + +Y+ NL + +T D+ LFS K++ + ++
Sbjct: 33 KHQPSSSAKSSAPGGGSGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDR 92
Query: 99 ETGEFRGYAHVDF-SDSLSLSMALKLDQEVVRGRPVKISCA 138
T + RG A V + S + A +D +++ GR + +S A
Sbjct: 93 HTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSIA 133
Score = 79 (32.9 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 12/16 (75%), Positives = 14/16 (87%)
Query: 280 CYECGEKGHLSSACPK 295
CYECG++GHLS CPK
Sbjct: 154 CYECGDEGHLSYECPK 169
>WB|WBGene00008688 [details] [associations]
symbol:F11A10.7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0071688 "striated muscle
myosin thick filament assembly" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0002009
GO:GO:0006898 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0000166 GO:GO:0071688 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0003676 GO:GO:0040035 GO:GO:0007281 HSSP:P19339
eggNOG:COG0724 EMBL:Z68297 KO:K14837 GeneTree:ENSGT00390000011249
RefSeq:NP_502291.1 ProteinModelPortal:Q95QL3 SMR:Q95QL3
STRING:Q95QL3 PaxDb:Q95QL3 EnsemblMetazoa:F11A10.7 GeneID:178148
KEGG:cel:CELE_F11A10.7 UCSC:F11A10.7 CTD:178148 WormBase:F11A10.7
HOGENOM:HOG000017901 InParanoid:Q95QL3 OMA:KEFGHIE NextBio:899918
Uniprot:Q95QL3
Length = 394
Score = 134 (52.2 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 40/148 (27%), Positives = 80/148 (54%)
Query: 15 INFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWD 74
+ F E +V++AL +G+++D +++ + K + D I++GNL ++
Sbjct: 206 VKFGAEESVEKALKYNGTKLDDHVIRVDKVGSKKKEFGKDMA---------IFVGNLPFE 256
Query: 75 ITEEDLKKLFSDC--KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRP 132
ITE+ L FS + ++R +K+TG+ +G+A V+F S+S+AL ++ + R
Sbjct: 257 ITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLALSMETIKMEKRD 316
Query: 133 VKISCAVPPKKGINSKSRSLPSNKRATS 160
++I+ + KKG +K + + K+ TS
Sbjct: 317 LRITKVM--KKGHLTK---IQTAKKRTS 339
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 135 (52.6 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 40/131 (30%), Positives = 69/131 (52%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYN---RI 66
+GIA + F +V A+ L G + G+ + +Q +A K R + + +G R+
Sbjct: 222 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK-NRLAAMANNLQKGSGGPVRL 280
Query: 67 YIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LD 124
Y+G+L +ITE+ L+ + KI ++ + ETG +GY + FSDS AL+ L+
Sbjct: 281 YVGSLHCNITEDMLRGILEPFGKIDNIVLMKDSETGRSKGYGFITFSDSECARRALEQLN 340
Query: 125 QEVVRGRPVKI 135
+ GRP++I
Sbjct: 341 GFELAGRPMRI 351
>UNIPROTKB|A2A2V2 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL133418 EMBL:AL732292 UniGene:Hs.535224
HGNC:HGNC:28965 HOGENOM:HOG000060230 HOVERGEN:HBG052167
IPI:IPI00930315 SMR:A2A2V2 STRING:A2A2V2 Ensembl:ENST00000447801
Uniprot:A2A2V2
Length = 408
Score = 134 (52.2 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 47/166 (28%), Positives = 85/166 (51%)
Query: 13 AIINFRTEGAVKRALALDGSEM-DGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNL 71
A + F+ E A +AL +G+++ DG +++ A TS + V ++GNL
Sbjct: 224 AYVVFKEESAATQALKRNGAQIADGFRIRVD-----LASETSSRDKRSV------FVGNL 272
Query: 72 SWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRG 130
+ + E ++K F DC I ++R +K TG +G+ +V F ++ S+ +ALKL+ + G
Sbjct: 273 PYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMG 332
Query: 131 RPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLG-TSNDAD 175
R +++ +V +K K ++ SN R + GL TS A+
Sbjct: 333 RKLRVMRSVNKEK---FKQQN--SNPRLKNVSKPKQGLNFTSKTAE 373
>UNIPROTKB|P42696 [details] [associations]
symbol:RBM34 "RNA-binding protein 34" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL133418 eggNOG:COG0724 EMBL:D38491 EMBL:AK292362
EMBL:AL732292 EMBL:BC029451 IPI:IPI00181617 IPI:IPI00930357
RefSeq:NP_001155005.1 RefSeq:NP_055829.2 UniGene:Hs.535224
ProteinModelPortal:P42696 SMR:P42696 IntAct:P42696 STRING:P42696
PhosphoSite:P42696 DMDM:57013870 SWISS-2DPAGE:P42696 PaxDb:P42696
PRIDE:P42696 DNASU:23029 Ensembl:ENST00000366606
Ensembl:ENST00000408888 GeneID:23029 KEGG:hsa:23029 UCSC:uc001hwn.3
UCSC:uc010pxp.1 CTD:23029 GeneCards:GC01M235294 HGNC:HGNC:28965
HPA:HPA028606 neXtProt:NX_P42696 PharmGKB:PA142671094
HOGENOM:HOG000060230 HOVERGEN:HBG052167 InParanoid:P42696
OMA:AEGHSKS OrthoDB:EOG46DM2Z PhylomeDB:P42696 GenomeRNAi:23029
NextBio:44002 ArrayExpress:P42696 Bgee:P42696 CleanEx:HS_RBM34
Genevestigator:P42696 GermOnline:ENSG00000188739 Uniprot:P42696
Length = 430
Score = 134 (52.2 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 47/166 (28%), Positives = 85/166 (51%)
Query: 13 AIINFRTEGAVKRALALDGSEM-DGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNL 71
A + F+ E A +AL +G+++ DG +++ A TS + V ++GNL
Sbjct: 246 AYVVFKEESAATQALKRNGAQIADGFRIRVD-----LASETSSRDKRSV------FVGNL 294
Query: 72 SWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRG 130
+ + E ++K F DC I ++R +K TG +G+ +V F ++ S+ +ALKL+ + G
Sbjct: 295 PYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMG 354
Query: 131 RPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLG-TSNDAD 175
R +++ +V +K K ++ SN R + GL TS A+
Sbjct: 355 RKLRVMRSVNKEK---FKQQN--SNPRLKNVSKPKQGLNFTSKTAE 395
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 136 (52.9 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 51/216 (23%), Positives = 102/216 (47%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMD--GLFLKIQPYKATKAKRTSDFTPKIVEGY 63
GK +GIA I F+TE ++ L G+E+D G + Q ++ K S + +V
Sbjct: 348 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLV--- 404
Query: 64 NRIYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK- 122
+ NLS+ TEE L+++F K + ++ N + G+ +GYA ++F+ AL
Sbjct: 405 ----LSNLSYSATEETLQEVFE--KATHIKVPQN-QNGKSKGYAFIEFASFEDAKEALNS 457
Query: 123 LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVTS 182
++ + GR +++ P +G + +RS PS +++ T ++ + G++ +
Sbjct: 458 CNKREIEGRAIRLELQGP--RG-SPNARSQPSKTLFVKGLSEDTTEETLKESFD-GSIRA 513
Query: 183 NVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE 218
+ + +G+S +D ++ + E GE
Sbjct: 514 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 549
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 136 (52.9 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 51/216 (23%), Positives = 102/216 (47%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMD--GLFLKIQPYKATKAKRTSDFTPKIVEGY 63
GK +GIA I F+TE ++ L G+E+D G + Q ++ K S + +V
Sbjct: 353 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLV--- 409
Query: 64 NRIYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK- 122
+ NLS+ TEE L+++F K + ++ N + G+ +GYA ++F+ AL
Sbjct: 410 ----LSNLSYSATEETLQEVFE--KATHIKVPQN-QNGKSKGYAFIEFASFEDAKEALNS 462
Query: 123 LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVTS 182
++ + GR +++ P +G + +RS PS +++ T ++ + G++ +
Sbjct: 463 CNKREIEGRAIRLELQGP--RG-SPNARSQPSKTLFVKGLSEDTTEETLKESFD-GSIRA 518
Query: 183 NVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE 218
+ + +G+S +D ++ + E GE
Sbjct: 519 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 554
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 136 (52.9 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 51/216 (23%), Positives = 102/216 (47%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMD--GLFLKIQPYKATKAKRTSDFTPKIVEGY 63
GK +GIA I F+TE ++ L G+E+D G + Q ++ K S + +V
Sbjct: 353 GKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLV--- 409
Query: 64 NRIYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK- 122
+ NLS+ TEE L+++F K + ++ N + G+ +GYA ++F+ AL
Sbjct: 410 ----LSNLSYSATEETLQEVFE--KATHIKVPQN-QNGKSKGYAFIEFASFEDAKEALNS 462
Query: 123 LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVTS 182
++ + GR +++ P +G + +RS PS +++ T ++ + G++ +
Sbjct: 463 CNKREIEGRAIRLELQGP--RG-SPNARSQPSKTLFVKGLSEDTTEETLKESFD-GSIRA 518
Query: 183 NVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE 218
+ + +G+S +D ++ + E GE
Sbjct: 519 RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 554
>ASPGD|ASPL0000043989 [details] [associations]
symbol:AN1517 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:BN001307
Gene3D:3.30.70.330 GO:GO:0003676 ProteinModelPortal:C8VMQ1
EnsemblFungi:CADANIAT00008145 Uniprot:C8VMQ1
Length = 450
Score = 134 (52.2 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 40/136 (29%), Positives = 69/136 (50%)
Query: 3 FPDTGKFRGIAIINFRTEGAVKRAL-ALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVE 61
+ G +G + F + A +RA+ A+ +G ++ Y A + T+ F K +
Sbjct: 304 YDSRGISKGYGYVQFSSNAAARRAIDAMHMRIFEGR--RVTLYYA-QTNITNSFKNK--K 358
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDCK-ISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
N +YIGN+ +++T+ DL L D ++ +R ++++G RGY H +F D S +A
Sbjct: 359 PTNTLYIGNVPFEMTDRDLNDLVKDLDGLTDVRVTVDRQSGALRGYIHAEFLDIQSAMVA 418
Query: 121 L-KLDQEVVRGRPVKI 135
KL Q GR +KI
Sbjct: 419 HEKLAQRRPYGRRLKI 434
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 136 (52.9 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 55/234 (23%), Positives = 109/234 (46%)
Query: 47 TKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRG 105
+ AK+ T + G ++ GNLS+ I D++ F + ++ +R ++ + G F+G
Sbjct: 367 SNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRL-SSFDDGSFKG 425
Query: 106 YAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAV---------PPKKGINSKSRSLPSNK 156
Y H++F+ AL+++ +++ GR V++ A P +KG S+SR++
Sbjct: 426 YGHIEFASPEEAQKALEMNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTIYVRG 485
Query: 157 RATSKVTDSAGLGTSNDADNSGAVTS-NVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYE 215
++S D + G VT +V + +G S +IDL++ + + + E
Sbjct: 486 FSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEALQLSGSE 545
Query: 216 CGEKGHLSSACLKKTADQTMVTGKVSDNA---GSRTGNFADNAGLGTTNVSDNA 266
G G++ ++++ + G+ S+ A G+ G +D A G SD A
Sbjct: 546 IGG-GNIH---VEESRPRDSDEGRSSNRAPARGAPRGRHSDRAPRGG-RFSDRA 594
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 41/171 (23%), Positives = 76/171 (44%)
Query: 5 DTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYN 64
D G F+G I F + ++AL ++G + G +++ R S+ K +
Sbjct: 419 DDGSFKGYGHIEFASPEEAQKALEMNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQS 478
Query: 65 R-IYIGNLSWDITEEDLKKL----FSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLS 118
R IY+ S + E+++KK FS C +++ + T++ETG RG+A++D +
Sbjct: 479 RTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFD-- 536
Query: 119 MALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLG 169
AL+L + G + + + P S P+ + +D A G
Sbjct: 537 EALQLSGSEIGGGNIHVEESRPRDSDEGRSSNRAPARGAPRGRHSDRAPRG 587
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 131 (51.2 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 49/194 (25%), Positives = 82/194 (42%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P+T + RG + + T V A+ ++DG ++P +A R P
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRV--VEPKRAVS--REDSQRPGAH 101
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G + D E L+ F KI + T++ +G+ RG+A V F D S+
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 120 ALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGA 179
+ V+G ++ A+P K+ + S S S +R + G G + DN G
Sbjct: 162 IVIQKYHTVKGHNCEVRKALP-KQEMASASSS-QRGRRGSGNFGGGRGDGFGGN-DNFGR 218
Query: 180 VTSNVAANAGSGTS 193
N + G G S
Sbjct: 219 -GGNFSGRGGFGGS 231
>UNIPROTKB|G4MTM5 [details] [associations]
symbol:MGG_12370 "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581 EMBL:CM001232
KO:K14838 RefSeq:XP_003715390.1 ProteinModelPortal:G4MTM5
EnsemblFungi:MGG_12370T0 GeneID:2683169 KEGG:mgr:MGG_12370
Uniprot:G4MTM5
Length = 378
Score = 132 (51.5 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 38/134 (28%), Positives = 70/134 (52%)
Query: 43 PYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETG 101
P +TK K+++ +G IYIG++ + E ++++ S I++LR NK+TG
Sbjct: 149 PKVSTKVKKSAQAGSS--DGPRVIYIGHIPYGFFEHEIRQYLSQFGTITNLRLSRNKKTG 206
Query: 102 EFRGYAHVDFSDSLSLSMALK-LDQEVVRGRPVKISCAVPPK-------KGINSKSRSLP 153
+GYA V+F D+ + ++ K +D ++ GR +K+ VP + KG N + + +P
Sbjct: 207 ASKGYAFVEFQDASTAAIVAKTMDAYLLFGRILKVKL-VPRESQHDNLFKGANRRFKKVP 265
Query: 154 SNKRATSKVTDSAG 167
K A ++ G
Sbjct: 266 WTKMAGKELEKPKG 279
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 111 (44.1 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 60 VEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLS 118
+ G++ +Y+GN + TE+DL FS +S++R ++ETG RG+A V+F++ +
Sbjct: 1 MSGFS-VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQ 59
Query: 119 MALKLDQEV-VRGRPVKISCA 138
A+ V GR ++++ A
Sbjct: 60 RAVDQFNGVDFNGRALRVNLA 80
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 111 (44.1 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 60 VEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLS 118
+ G++ +Y+GN + TE+DL FS +S++R ++ETG RG+A V+F++ +
Sbjct: 1 MSGFS-VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQ 59
Query: 119 MALKLDQEV-VRGRPVKISCA 138
A+ V GR ++++ A
Sbjct: 60 RAVDQFNGVDFNGRALRVNLA 80
>UNIPROTKB|A6NDY0 [details] [associations]
symbol:PABPN1L "Embryonic polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC092384
eggNOG:COG0724 HOVERGEN:HBG107480 KO:K14396 EMBL:BC130001
EMBL:BC130002 IPI:IPI00375983 IPI:IPI00854628 IPI:IPI00942797
IPI:IPI01021917 RefSeq:NP_001073956.2 UniGene:Hs.730522
ProteinModelPortal:A6NDY0 SMR:A6NDY0 STRING:A6NDY0
PhosphoSite:A6NDY0 PaxDb:A6NDY0 PRIDE:A6NDY0 DNASU:390748
Ensembl:ENST00000378358 Ensembl:ENST00000411789
Ensembl:ENST00000419291 Ensembl:ENST00000547152 GeneID:390748
KEGG:hsa:390748 UCSC:uc002fmi.3 UCSC:uc010vpd.2 UCSC:uc010vpe.2
CTD:390748 GeneCards:GC16M088928 H-InvDB:HIX0059621 HGNC:HGNC:37237
HPA:HPA043415 neXtProt:NX_A6NDY0 HOGENOM:HOG000208465
InParanoid:A6NDY0 OMA:RCGEVHR GenomeRNAi:390748 NextBio:104019
ArrayExpress:A6NDY0 Bgee:A6NDY0 Genevestigator:A6NDY0
Uniprot:A6NDY0
Length = 278
Score = 129 (50.5 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 30/98 (30%), Positives = 56/98 (57%)
Query: 56 TP--KIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFS 112
TP K+ + +Y+GN+ + + E+L+ FS C ++ + +K +G +GYA+++F+
Sbjct: 137 TPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFA 196
Query: 113 DSLSLSMALKLDQEVVRGRPVKISCAVPPKKGINSKSR 150
S+ A++LDQ + RGR +K+ GI+S R
Sbjct: 197 TKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDR 234
>WB|WBGene00019537 [details] [associations]
symbol:K08D12.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0046872 GO:GO:0008270 GO:GO:0040011
GO:GO:0000003 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 OMA:FQFMSSS
GeneTree:ENSGT00510000047065 EMBL:FO081610 GeneID:176979
KEGG:cel:CELE_K08D12.3 UCSC:K08D12.3a.1 CTD:176979 NextBio:894830
RefSeq:NP_741323.1 ProteinModelPortal:Q966I7 SMR:Q966I7
STRING:Q966I7 PRIDE:Q966I7 EnsemblMetazoa:K08D12.3a.1
EnsemblMetazoa:K08D12.3a.2 WormBase:K08D12.3a InParanoid:Q966I7
ArrayExpress:Q966I7 Uniprot:Q966I7
Length = 151
Score = 110 (43.8 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 28/89 (31%), Positives = 38/89 (42%)
Query: 212 TCYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRTGNFADNAGLGTTNVSDNAGLS-- 269
+CY CG +GH S C ++ G S G R G G N + +S
Sbjct: 68 SCYNCGGRGHYSRDCPSARSEG----G--SGGYGGRGGEGRSFGGQKCYNCGRSGHISRE 121
Query: 270 -AVSGKIRRRTCYECGEKGHLSSACPKKT 297
SG + CY+C E GH+S CP +T
Sbjct: 122 CTESGSAEEKRCYQCQETGHISRDCPSQT 150
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 134 (52.2 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 49/214 (22%), Positives = 104/214 (48%)
Query: 4 PDTGKFRGIAIINFRT-EGAVKRALALDGSEMDGLFLKI-QPYKATKAKRTSDFTPKIVE 61
P T K +G A + + EGA ++G+ M G +K+ +P +A++ D + +
Sbjct: 165 PITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAK 224
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSD------CKISSLRFGTNKETGEFRGYAHVDFSDSL 115
+NRIY+ ++ D++EED+K +F CK++ GT+ T +GY +++++
Sbjct: 225 SFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQ---GTSLHT--HKGYGFIEYANKQ 279
Query: 116 SLSMAL-KLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDA 174
++ A+ ++ + G+ +++ ++ P + + P+ S + +A + +
Sbjct: 280 AMDEAIASMNLFDLGGQLLRVGRSITPPNAL-----ACPTTN---STMPTAAAVAAAAAT 331
Query: 175 DNSGAVTSNVAANAGSGTSDVTEHIDLSAVSGKI 208
A+ + VA+NA G S T + AV K+
Sbjct: 332 AKIQALDA-VASNAVLGLSQNTPVMAAGAVVTKV 364
>ASPGD|ASPL0000038712 [details] [associations]
symbol:AN3427 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000193653 OMA:KNPPSRI OrthoDB:EOG47DDRF
EMBL:AACD01000056 RefSeq:XP_661031.1 ProteinModelPortal:Q5B7Q3
STRING:Q5B7Q3 EnsemblFungi:CADANIAT00009611 GeneID:2874554
KEGG:ani:AN3427.2 Uniprot:Q5B7Q3
Length = 357
Score = 130 (50.8 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 34/112 (30%), Positives = 58/112 (51%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDG---LFLKIQPYKATKAKRTSDFTPKIVEG---- 62
+G A ++F T A++ AL L + G L + YK K D
Sbjct: 119 KGFAYVDFSTPKALEEALGLSEQLVSGRRVLIKDAKNYKGRPEKSQDDGNNAPTSSGRPP 178
Query: 63 YNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSD 113
R+++GNLS+D T+E L++ FS C ++++ T +++G+ +GYA V+F D
Sbjct: 179 SKRLFVGNLSFDTTKEFLEEHFSQCGTVTNVHVATFQDSGKCKGYAWVEFED 230
Score = 113 (44.8 bits), Expect = 0.00075, P = 0.00075
Identities = 37/116 (31%), Positives = 62/116 (53%)
Query: 66 IYIGNLSWDITEEDLKKL------FSDCKISSLRFG--TNKET-GEFRGYAHVDFSDSLS 116
I+IGNL++ +T+ED+++ F+D I+ + ++K + + +G+A+VDFS +
Sbjct: 72 IWIGNLAFSVTKEDIRRFLTTNCSFTDATITRVHLPKPSDKSSRAQNKGFAYVDFSTPKA 131
Query: 117 LSMALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSN 172
L AL L +++V GR V I A KG KS+ +N +S S L N
Sbjct: 132 LEEALGLSEQLVSGRRVLIKDA-KNYKGRPEKSQDDGNNAPTSSGRPPSKRLFVGN 186
>ZFIN|ZDB-GENE-041210-114 [details] [associations]
symbol:zcrb1 "zinc finger CCHC-type and RNA binding
motif 1" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-041210-114 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:AL929504 GeneTree:ENSGT00600000084414
HSSP:Q7YZ92 CTD:85437 HOGENOM:HOG000007632 KO:K13154
OrthoDB:EOG4GXFNW EMBL:BC092992 IPI:IPI00501794
RefSeq:NP_001017589.1 UniGene:Dr.80171 ProteinModelPortal:Q5SP50
SMR:Q5SP50 Ensembl:ENSDART00000067174 GeneID:550251 KEGG:dre:550251
eggNOG:NOG270852 InParanoid:Q5SP50 OMA:YRYSSVA NextBio:20879514
Bgee:Q5SP50 Uniprot:Q5SP50
Length = 218
Score = 87 (35.7 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 14/16 (87%), Positives = 15/16 (93%)
Query: 280 CYECGEKGHLSSACPK 295
CYECGE+GHLS ACPK
Sbjct: 107 CYECGEEGHLSYACPK 122
Score = 79 (32.9 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSL-SMALKL 123
+Y+ N+ + +T D+ KL S K+ + +K T +G A V F D S + + L
Sbjct: 12 VYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDRESAYNCSRSL 71
Query: 124 DQEVVRGRPVKISCAV 139
+ + + GR VK S A+
Sbjct: 72 NNKQLFGRMVKASIAI 87
Score = 77 (32.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 213 CYECGEKGHLSSACLK 228
CYECGE+GHLS AC K
Sbjct: 107 CYECGEEGHLSYACPK 122
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 109 (43.4 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 22/86 (25%), Positives = 48/86 (55%)
Query: 55 FTPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSD 113
F K+ N+IY+G+LS+D+T ++L+ F +I + ++ETG +G+A + +
Sbjct: 9 FLRKMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGT 68
Query: 114 SLSLSMALKLDQEV-VRGRPVKISCA 138
+ A+ + ++GR ++++ A
Sbjct: 69 QDAAQEAVSKANGIDLQGRKIRVNIA 94
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 109 (43.4 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 22/86 (25%), Positives = 48/86 (55%)
Query: 55 FTPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSD 113
F K+ N+IY+G+LS+D+T ++L+ F +I + ++ETG +G+A + +
Sbjct: 9 FLRKMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGT 68
Query: 114 SLSLSMALKLDQEV-VRGRPVKISCA 138
+ A+ + ++GR ++++ A
Sbjct: 69 QDAAQEAVSKANGIDLQGRKIRVNIA 94
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 133 (51.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 52/217 (23%), Positives = 104/217 (47%)
Query: 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV--EGY 63
GK +GIA I F++E ++ L G+E+DG + + Y K +R + T K G
Sbjct: 428 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY-YTGEKGQR-QERTGKTSTWSGE 485
Query: 64 NR-IYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
++ + + NLS+ T+E L+++F K + ++ N G+ +GYA ++F+ AL
Sbjct: 486 SKTLVLSNLSYSATKETLEEVFE--KATFIKVPQNPH-GKPKGYAFIEFASFEDAKEALN 542
Query: 123 LDQEV-VRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVT 181
++ + GR +++ +G NS+S+ PS +++ T ++ G+V
Sbjct: 543 SCNKMEIEGRTIRLEL-----QGSNSRSQ--PSKTLFVKGLSEDTTEETLKESFE-GSVR 594
Query: 182 SNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGE 218
+ + + +G+S +D ++ + E GE
Sbjct: 595 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGE 631
>UNIPROTKB|E1B908 [details] [associations]
symbol:E1B908 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:DAAA02046256 IPI:IPI00826522
Ensembl:ENSBTAT00000032540 Uniprot:E1B908
Length = 290
Score = 127 (49.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 34/122 (27%), Positives = 60/122 (49%)
Query: 30 DGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-K 88
+G E G L Q + T K + IY+GN+ + T ++L+ F+ C +
Sbjct: 129 EGEEAAGALLARQ----LLSPETDSPLEKAEADHRSIYVGNVDYGGTAQELEAYFNHCGE 184
Query: 89 ISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPKKGINSK 148
I + +K +G +GYA+++F+ S A++LD+ + RGR +K+ GI+S
Sbjct: 185 IHRVTILCDKFSGHPKGYAYIEFATESSAQAAVELDKSIFRGRVIKVLPKRTNLPGISST 244
Query: 149 SR 150
R
Sbjct: 245 DR 246
>RGD|1359222 [details] [associations]
symbol:Eif4h "eukaryotic translation initiation factor 4H"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0019953 "sexual reproduction" evidence=IEA;ISO] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0048589
"developmental growth" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1359222 GO:GO:0048471 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 eggNOG:COG0724 GeneTree:ENSGT00530000063406 CTD:7458
HOVERGEN:HBG018193 HOGENOM:HOG000013063 OMA:PRTVSEP
OrthoDB:EOG46DM3S EMBL:BC083818 IPI:IPI00370315
RefSeq:NP_001006958.1 UniGene:Rn.79423 HSSP:P23588
ProteinModelPortal:Q5XI72 SMR:Q5XI72 STRING:Q5XI72
PhosphoSite:Q5XI72 PRIDE:Q5XI72 Ensembl:ENSRNOT00000050059
GeneID:288599 KEGG:rno:288599 UCSC:RGD:1359222 InParanoid:Q5XI72
NextBio:628401 ArrayExpress:Q5XI72 Genevestigator:Q5XI72
Uniprot:Q5XI72
Length = 248
Score = 125 (49.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 36/130 (27%), Positives = 61/130 (46%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D I S+R +K+T +F+G+ +V+F + SL AL D
Sbjct: 45 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 104
Query: 127 VVRGRPVKISCAVPPK--KGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVTSNV 184
++ R +++ A K KG + P + R + G S D +SG +
Sbjct: 105 LLGDRSLRVDIAEGRKQDKGGFGFRKGGPDD-RGMGGSREPRGGWDSRDDFSSGYRDDFL 163
Query: 185 AANAGSGTSD 194
GS D
Sbjct: 164 GGRGGSRPGD 173
>UNIPROTKB|Q5XI72 [details] [associations]
symbol:Eif4h "Eukaryotic translation initiation factor 4H"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019953 "sexual reproduction" evidence=IEA]
[GO:0048589 "developmental growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1359222 GO:GO:0048471 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 eggNOG:COG0724 GeneTree:ENSGT00530000063406 CTD:7458
HOVERGEN:HBG018193 HOGENOM:HOG000013063 OMA:PRTVSEP
OrthoDB:EOG46DM3S EMBL:BC083818 IPI:IPI00370315
RefSeq:NP_001006958.1 UniGene:Rn.79423 HSSP:P23588
ProteinModelPortal:Q5XI72 SMR:Q5XI72 STRING:Q5XI72
PhosphoSite:Q5XI72 PRIDE:Q5XI72 Ensembl:ENSRNOT00000050059
GeneID:288599 KEGG:rno:288599 UCSC:RGD:1359222 InParanoid:Q5XI72
NextBio:628401 ArrayExpress:Q5XI72 Genevestigator:Q5XI72
Uniprot:Q5XI72
Length = 248
Score = 125 (49.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 36/130 (27%), Positives = 61/130 (46%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D I S+R +K+T +F+G+ +V+F + SL AL D
Sbjct: 45 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 104
Query: 127 VVRGRPVKISCAVPPK--KGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVTSNV 184
++ R +++ A K KG + P + R + G S D +SG +
Sbjct: 105 LLGDRSLRVDIAEGRKQDKGGFGFRKGGPDD-RGMGGSREPRGGWDSRDDFSSGYRDDFL 163
Query: 185 AANAGSGTSD 194
GS D
Sbjct: 164 GGRGGSRPGD 173
>CGD|CAL0004922 [details] [associations]
symbol:orf19.6766 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030684 "preribosome" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 39/132 (29%), Positives = 69/132 (52%)
Query: 1 MTFPDTG-KFRGIAIINFRTEGAVKRALALDGSEMDG--LFLK-IQPYKATKAKRTSDFT 56
+ P G + +G A ++ + V+ + L S ++G L +K ++ + SD T
Sbjct: 143 VNIPKKGNQIKGFAYVDVPSSSHVETIVGLSESILNGRKLLIKDANSFEGRPEQSKSDAT 202
Query: 57 PKI-VEGYN---RI-YIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVD 110
+ N RI ++GNLS+D TE+ L++ F C +I +R T ++TG+ +G+A +D
Sbjct: 203 QSGGINSSNPPSRILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAFID 262
Query: 111 FSDSLSLSMALK 122
F D + ALK
Sbjct: 263 FKDEEGATTALK 274
>UNIPROTKB|Q5ADS5 [details] [associations]
symbol:NOP13 "Putative uncharacterized protein NOP13"
species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004922 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719745.1 RefSeq:XP_719862.1 ProteinModelPortal:Q5ADS5
STRING:Q5ADS5 GeneID:3638469 GeneID:3638574 KEGG:cal:CaO19.14058
KEGG:cal:CaO19.6766 Uniprot:Q5ADS5
Length = 396
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 39/132 (29%), Positives = 69/132 (52%)
Query: 1 MTFPDTG-KFRGIAIINFRTEGAVKRALALDGSEMDG--LFLK-IQPYKATKAKRTSDFT 56
+ P G + +G A ++ + V+ + L S ++G L +K ++ + SD T
Sbjct: 143 VNIPKKGNQIKGFAYVDVPSSSHVETIVGLSESILNGRKLLIKDANSFEGRPEQSKSDAT 202
Query: 57 PKI-VEGYN---RI-YIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVD 110
+ N RI ++GNLS+D TE+ L++ F C +I +R T ++TG+ +G+A +D
Sbjct: 203 QSGGINSSNPPSRILFVGNLSFDTTEDLLEEHFRHCGEIVKIRMATFQDTGKCKGFAFID 262
Query: 111 FSDSLSLSMALK 122
F D + ALK
Sbjct: 263 FKDEEGATTALK 274
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 131 (51.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 28/101 (27%), Positives = 51/101 (50%)
Query: 41 IQPYKATKAKRTSDFTPKI--VEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTN 97
++ A K+ TP G ++ NLS++I D++ F + ++ +RF TN
Sbjct: 272 VEMVDAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTN 331
Query: 98 KETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCA 138
++ G FRG+ HV+F+ S AL+ + GR +++ A
Sbjct: 332 RDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLDIA 372
>ASPGD|ASPL0000028407 [details] [associations]
symbol:AN5111 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0000747 "conjugation with
cellular fusion" evidence=IEA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:BN001305 Gene3D:4.10.60.10
SUPFAM:SSF57756 OMA:FQFMSSS EnsemblFungi:CADANIAT00003095
Uniprot:C8VEX3
Length = 171
Score = 117 (46.2 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 27/85 (31%), Positives = 40/85 (47%)
Query: 209 RRRTCYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRTGNFADNAGLGTTNVSDNAGL 268
+ ++CY CG GH+S C + ++ G+ G R G+ A N G S G
Sbjct: 47 KEKSCYRCGAVGHISRECPQAGENERPAGGQECYKCG-RVGHIARNCSQGG---SYGGGF 102
Query: 269 SAVSGKIRRRTCYECGEKGHLSSAC 293
G R++TCY CG GH++ C
Sbjct: 103 GGGYGG-RQQTCYSCGGFGHMARDC 126
>RGD|1310161 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310161 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 HOGENOM:HOG000060230
HOVERGEN:HBG052167 OrthoDB:EOG46DM2Z EMBL:BC087155 IPI:IPI00359899
RefSeq:NP_001014037.1 UniGene:Rn.93968 ProteinModelPortal:Q5M9F1
PhosphoSite:Q5M9F1 PRIDE:Q5M9F1 Ensembl:ENSRNOT00000027145
GeneID:307956 KEGG:rno:307956 UCSC:RGD:1310161 InParanoid:Q5M9F1
OMA:KKLAAIX NextBio:658166 Genevestigator:Q5M9F1
GermOnline:ENSRNOG00000020004 Uniprot:Q5M9F1
Length = 428
Score = 129 (50.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 42/151 (27%), Positives = 78/151 (51%)
Query: 13 AIINFRTEGAVKRALALDGSEM-DGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNL 71
A + F+ E A +AL +G+++ +G +++ T A R +++GNL
Sbjct: 244 AYVVFKEERAAAKALQRNGAQIAEGFRIRVDLASET-ASRDK----------RSVFVGNL 292
Query: 72 SWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRG 130
+ + E L++ F DC I ++R N TG RG+ +V F ++ ++ +ALKL+ + G
Sbjct: 293 PYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMG 352
Query: 131 RPVKISCAVPPKKGINSKSRSLPSNKRATSK 161
R +++ +V +K + S PS K+ SK
Sbjct: 353 RKLRVMRSVNKEK--LKQQNSNPSVKKDGSK 381
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 107 (42.7 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 22/77 (28%), Positives = 45/77 (58%)
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
+++++G LSW + LK+ F+ +++ ++ETG RG+ V FS S + A+K
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 123 -LDQEVVRGRPVKISCA 138
+D + + GR ++++ A
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 122 (48.0 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 35/138 (25%), Positives = 65/138 (47%)
Query: 4 PDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGY 63
P+TG+ RG I F+ G+V++ L +DG I P KA K+ +
Sbjct: 35 PNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRL--IDPKKAMAMKK---------DPV 83
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
+I++G L+ + TEE +++ F + +I ++ + +T + RG+ + F + + L+
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 123 LDQEVVRGRPVKISCAVP 140
V G +I A P
Sbjct: 144 KKFHNVSGSKCEIKVAQP 161
>UNIPROTKB|F8VSC7 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01020867
ProteinModelPortal:F8VSC7 SMR:F8VSC7 Ensembl:ENST00000550704
ArrayExpress:F8VSC7 Bgee:F8VSC7 Uniprot:F8VSC7
Length = 227
Score = 123 (48.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 29/100 (29%), Positives = 52/100 (52%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGE-FRGYAHVDFSDSLSLSMALKLDQ 125
++GNL +D+TEE +K+ F IS++R E +G+ + +F D SL AL L++
Sbjct: 99 FLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE 158
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDS 165
E + R +++ A + + RS ++ S TD+
Sbjct: 159 ESLGNRRIRVDVA-DQAQDKDRDDRSFGRDRNRDSDKTDT 197
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 126 (49.4 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 36/140 (25%), Positives = 66/140 (47%)
Query: 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVE 61
T P TG+ RG + F+ +V++ L L ++DG + + KA K K PK
Sbjct: 63 TDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEP----PK--- 115
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
++++G LS D +EE +K+ F +I ++ + +T E RG+ + ++D +
Sbjct: 116 ---KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 172
Query: 121 LKLDQEVVRGRPVKISCAVP 140
L+ + +I A P
Sbjct: 173 LESRYHQIGSGKCEIKVAQP 192
>UNIPROTKB|F8VYE9 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021378
ProteinModelPortal:F8VYE9 SMR:F8VYE9 Ensembl:ENST00000550390
ArrayExpress:F8VYE9 Bgee:F8VYE9 Uniprot:F8VYE9
Length = 185
Score = 119 (46.9 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGE-FRGYAHVDFSDSLSLSMALKLDQ 125
++GNL +D+TEE +K+ F IS++R E +G+ + +F D SL AL L++
Sbjct: 99 FLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE 158
Query: 126 EVVRGRPVKISCA 138
E + R +++ A
Sbjct: 159 ESLGNRRIRVDVA 171
>UNIPROTKB|G4MUH3 [details] [associations]
symbol:MGG_07252 "Polyadenylate-binding protein 2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K14396 RefSeq:XP_003715472.1
ProteinModelPortal:G4MUH3 SMR:G4MUH3 EnsemblFungi:MGG_07252T0
GeneID:2682998 KEGG:mgr:MGG_07252 Uniprot:G4MUH3
Length = 193
Score = 120 (47.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 26/108 (24%), Positives = 64/108 (59%)
Query: 32 SEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNR--IYIGNLSWDITEEDLKKLFSDC-K 88
+EM+ K++ +A+ ++ + + + + + I++GN+ + + E+++ F C
Sbjct: 39 AEMEEEAAKLREMQASLDSQSQELSTESRDDVDSRSIFVGNVDYSASPEEIQAHFQSCGS 98
Query: 89 ISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKIS 136
I+ + +K TG+ +G+A+V+F++ ++ AL L++ V +GR +K+S
Sbjct: 99 INRVTILLDKFTGQPKGFAYVEFTEPSLVAQALVLNESVFKGRNIKVS 146
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 121 (47.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 22/86 (25%), Positives = 51/86 (59%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
+Y+GN+ + T E++++ F C +S + ++ +G +G+A+V+F++ + AL +
Sbjct: 80 VYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFAYVEFTEKEGMQNALAMT 139
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSR 150
++RGR +K+ K G+++ +R
Sbjct: 140 DSLLRGRQIKVDPKRTNKPGMSTTNR 165
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 37/151 (24%), Positives = 75/151 (49%)
Query: 1 MTFPDTGKFRGIAIINFRT-EGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKI 59
+T ++G+ +G ++F T E A K G+ +DG +K+ + KA ++D
Sbjct: 271 ITDRESGRSKGFGYVDFATPEEAEKAHGEKQGAFIDGREIKVD-FSTGKATNSNDAAGAR 329
Query: 60 VEGY--------NRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVD 110
+ Y + +++GNL +D E+ + FS+ ++ SLR T +E+G +G+ +V
Sbjct: 330 AKKYGDTVSPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVT 389
Query: 111 FSDSLSLSMALK-LDQEVVRGRPVKISCAVP 140
F+ A + L+ + + GR ++ + P
Sbjct: 390 FNSVEDAKSAFEQLNGQSINGRNCRLDYSTP 420
Score = 114 (45.2 bits), Expect = 0.00095, P = 0.00095
Identities = 36/128 (28%), Positives = 62/128 (48%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
+++GNLSW++ + L + F C ++S R T++E+G +G+ +VDF+ A
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300
Query: 125 QEV-VRGRPVKISCAVPPKKGINSKSRSLPSNKR---ATSKVTDSAGLGT---SNDADNS 177
Q + GR +K+ + K NS + K+ S +D+ +G D D+
Sbjct: 301 QGAFIDGREIKVDFSTG--KATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFDADEDSV 358
Query: 178 GAVTSNVA 185
GA S VA
Sbjct: 359 GAFFSEVA 366
>UNIPROTKB|F1RGW8 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K14837
GeneTree:ENSGT00390000011249 CTD:23029 OMA:AEGHSKS EMBL:CU407042
RefSeq:XP_001925470.1 UniGene:Ssc.36566 ProteinModelPortal:F1RGW8
Ensembl:ENSSSCT00000011121 GeneID:100154004 KEGG:ssc:100154004
Uniprot:F1RGW8
Length = 424
Score = 128 (50.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 42/162 (25%), Positives = 80/162 (49%)
Query: 13 AIINFRTEGAVKRALALDGSEM-DGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNL 71
A + F+ E A +AL +G+++ DG +++ A TS + V ++GNL
Sbjct: 242 AYVVFKDESAAAKALERNGAQIADGFRIRVD-----LASETSSRDKRSV------FVGNL 290
Query: 72 SWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRG 130
+ + E ++K F DC + ++R + TG RG+ +V F ++ ++ +ALKL+ + G
Sbjct: 291 PYKVEESAVEKHFLDCGSVVAVRIVRDPVTGVGRGFGYVLFENTDAVHLALKLNNSELMG 350
Query: 131 RPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSN 172
R +++ ++ +K K S P K +K D + N
Sbjct: 351 RKLRVMRSIHKEK---LKQNSNPGLKNV-NKSKDGLNFPSKN 388
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 125 (49.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 28/84 (33%), Positives = 50/84 (59%)
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
NR+Y+GNLSW + + L+ LFS+ K+ R ++++G +G+ V + S + A+K
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 123 -LDQEVVRGRPVKISCAV--PPKK 143
LD + GR +++S A PP++
Sbjct: 264 SLDGADLDGRQIRVSEAEARPPRR 287
>RGD|1562761 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562761 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
HOVERGEN:HBG107480 KO:K14396 CTD:390748 HOGENOM:HOG000208465
OMA:RCGEVHR OrthoDB:EOG4N04GD EMBL:BC158789 IPI:IPI00359848
RefSeq:NP_001107251.1 UniGene:Rn.154587 ProteinModelPortal:B0BNE4
SMR:B0BNE4 PRIDE:B0BNE4 GeneID:307920 KEGG:rno:307920
UCSC:RGD:1562761 NextBio:658097 Genevestigator:B0BNE4
Uniprot:B0BNE4
Length = 269
Score = 124 (48.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/93 (31%), Positives = 53/93 (56%)
Query: 60 VEGYNR-IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
VE +R +Y+GN+ + + +L+ FS C +I + +K +G +GYA+++F+ S+
Sbjct: 134 VEADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSV 193
Query: 118 SMALKLDQEVVRGRPVKISCAVPPKKGINSKSR 150
A++LD+ RGR +K+ GI+S R
Sbjct: 194 QAAVRLDESTFRGRVIKVLPKRTNFPGISSTDR 226
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 126 (49.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 36/140 (25%), Positives = 66/140 (47%)
Query: 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVE 61
T P TG+ RG + F+ +V++ L L ++DG + + KA K K PK
Sbjct: 99 TDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKEP----PK--- 151
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
++++G LS D +EE +K+ F +I ++ + +T E RG+ + ++D +
Sbjct: 152 ---KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 208
Query: 121 LKLDQEVVRGRPVKISCAVP 140
L+ + +I A P
Sbjct: 209 LESRYHQIGSGKCEIKVAQP 228
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 127 (49.8 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 39/144 (27%), Positives = 75/144 (52%)
Query: 6 TGKFRGIAIINFRTEGAVKRALA-LDGSEMDG--LFLKIQPYKAT----KAKRTSDFTPK 58
T + RG ++F + ++A+ + G E+DG + + K +AK+ D TP
Sbjct: 205 TDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGD-TPS 263
Query: 59 IVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
E + +++GNLS++ + + +LF+ ++ S+R T+ ET + +G+ +V FS+
Sbjct: 264 --EPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDA 321
Query: 118 SMALK-LDQEVVRGRPVKISCAVP 140
AL L E + RPV++ + P
Sbjct: 322 KKALDALQGEYIDNRPVRLDFSSP 345
>CGD|CAL0002378 [details] [associations]
symbol:SBP1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0032055 "negative regulation of translation in response to
stress" evidence=IEA] [GO:0043047 "single-stranded telomeric DNA
binding" evidence=IEA] [GO:0031370 "eukaryotic initiation factor 4G
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002378
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000003
EMBL:AACQ01000004 eggNOG:NOG72438 RefSeq:XP_722924.1
RefSeq:XP_723070.1 ProteinModelPortal:Q5ANP6 GeneID:3635280
GeneID:3635396 KEGG:cal:CaO19.13276 KEGG:cal:CaO19.5854
Uniprot:Q5ANP6
Length = 282
Score = 124 (48.7 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 44/154 (28%), Positives = 72/154 (46%)
Query: 56 TPKIVEGYNRIYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKET-GE--FR---GYAHV 109
T ++E +RIY+GN+ + TE++LK+LF D K++ + + T G+ F+ G+A V
Sbjct: 10 TKPVIE--DRIYVGNVDFKATEDELKELFQDLKVTEVEIPFKENTRGDKVFKRHLGFAFV 67
Query: 110 DFS--DSLSLSMALKLDQEVVRGRPVKISCAVPPKKGINSKSR--SLPSNKRATSKVTDS 165
F D ++A Q+ R R + I AVPP K R + + + KV +
Sbjct: 68 QFENKDDADKAIATYNGQKFQR-RNIFIKKAVPPPTEEEKKERVEAFKAKREEIKKVKEQ 126
Query: 166 AGLGTSNDADNSGAVTSNVAANAGSGTSDVTEHI 199
+ + A + A N S T+D T I
Sbjct: 127 KKAEAKKKREGATADAATTA-NGESATTDSTPAI 159
>UNIPROTKB|G3V9K1 [details] [associations]
symbol:Pabpn1l "Similar to embryonic pol(YA) binding
protein 2 (Predicted)" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1562761 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473972 GeneTree:ENSGT00390000001517 UniGene:Rn.154587
Ensembl:ENSRNOT00000045052 Uniprot:G3V9K1
Length = 284
Score = 124 (48.7 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 29/93 (31%), Positives = 53/93 (56%)
Query: 60 VEGYNR-IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
VE +R +Y+GN+ + + +L+ FS C +I + +K +G +GYA+++F+ S+
Sbjct: 149 VEADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSV 208
Query: 118 SMALKLDQEVVRGRPVKISCAVPPKKGINSKSR 150
A++LD+ RGR +K+ GI+S R
Sbjct: 209 QAAVRLDESTFRGRVIKVLPKRTNFPGISSTDR 241
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 131 (51.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 50/196 (25%), Positives = 90/196 (45%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYN- 64
+GK +G+A + F T+ AV +ALA +G + +KIQ +A K + + ++ +
Sbjct: 525 SGKSKGVAYVEFYTQEAVIKALAANGMMLKNRPIKIQSSQAEKNRAAKAAKHQPIDPNDI 584
Query: 65 --RIYIGNLSW---DITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLS 118
++YIG L +ITE++LK+LF+ I + + TG+ +G+ + F +
Sbjct: 585 PLKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAI 644
Query: 119 MALKLDQEV-VRGRPVKISCAVPPKKGI---NSKSRSLPSNKRATSKVTDSAGLGTSNDA 174
AL + + V GR +K+ A K + N++ L + A + T+
Sbjct: 645 EALTVMNGMEVAGREIKVGYAQDSKYLLACDNTQENILKQQQMAKNINTEEEEQDNEK-I 703
Query: 175 DNSGAVTSNVAANAGS 190
DN + A GS
Sbjct: 704 DNDDGDGGGLIAGTGS 719
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 131 (51.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 50/196 (25%), Positives = 90/196 (45%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYN- 64
+GK +G+A + F T+ AV +ALA +G + +KIQ +A K + + ++ +
Sbjct: 525 SGKSKGVAYVEFYTQEAVIKALAANGMMLKNRPIKIQSSQAEKNRAAKAAKHQPIDPNDI 584
Query: 65 --RIYIGNLSW---DITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLS 118
++YIG L +ITE++LK+LF+ I + + TG+ +G+ + F +
Sbjct: 585 PLKLYIGGLLGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAI 644
Query: 119 MALKLDQEV-VRGRPVKISCAVPPKKGI---NSKSRSLPSNKRATSKVTDSAGLGTSNDA 174
AL + + V GR +K+ A K + N++ L + A + T+
Sbjct: 645 EALTVMNGMEVAGREIKVGYAQDSKYLLACDNTQENILKQQQMAKNINTEEEEQDNEK-I 703
Query: 175 DNSGAVTSNVAANAGS 190
DN + A GS
Sbjct: 704 DNDDGDGGGLIAGTGS 719
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 130 (50.8 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 31/134 (23%), Positives = 67/134 (50%)
Query: 57 PKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSL 115
P + +RIYIG+++W++TE+ ++ +FS ++ S N +TG+ +G+ VDF
Sbjct: 762 PVPINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKK 821
Query: 116 SLSMALK-LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSK-----VTDSAGLG 169
S A+ ++ + GR +K+ N+ + S+ +N + + ++
Sbjct: 822 SADDAIATMNGFELLGRSIKVGRPTKSSNNNNNNNNSINNNNNTNNNNNNNNINNNINNN 881
Query: 170 TSNDADNSGAVTSN 183
+N+ +N+ T+N
Sbjct: 882 NNNNNNNNNTNTNN 895
Score = 46 (21.3 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 6 TGKFRGIAIINF-RTEGAVKRALALDGSEMDGLFLKI-QPYKAT 47
+GK +G A I + E A K ++ M G +K+ +P+ T
Sbjct: 624 SGKSKGYAFIEYDNQESAAKALQSMTNYVMCGRAIKVARPFTGT 667
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 126 (49.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 53/229 (23%), Positives = 99/229 (43%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEM-DGLFLKI-QPYKATKAKRTSDFTPKIVEGY 63
T K +G A + + A + AL S M G +K+ +P +A+ D + +
Sbjct: 123 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 182
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
NRIY+ ++ D++++D+K +F KI S + TG+ +GY +++ + S A+
Sbjct: 183 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 242
Query: 123 -LDQEVVRGRPVKISCAVPPKKGINSKSR--SLP-----SNKRATSKVTDS---AGLGTS 171
++ + G+ +++ AV P + + + LP + AT+K+T AG
Sbjct: 243 SMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAATAKITAQEAVAGAAVL 302
Query: 172 NDADNSGAVTS--NVAANAGSGTSDVTEHIDLSAVSGKIRRR--TCYEC 216
G V+ +A G+ V ++G TCY C
Sbjct: 303 GTLATPGLVSPALTLAQPLGALPQAVMAAQAPGVITGAFPAHCVTCYNC 351
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 125 (49.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 35/140 (25%), Positives = 70/140 (50%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEM-DGLFLKI-QPYKATKAKRTSDFTPKIVEGY 63
T K +G A + + A + AL S M G +K+ +P +A+ D + +
Sbjct: 148 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 207
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
NRIY+ ++ D++++D+K +F KI S + TG+ +GY +++ + S A+
Sbjct: 208 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 267
Query: 123 -LDQEVVRGRPVKISCAVPP 141
++ + G+ +++ AV P
Sbjct: 268 SMNLFDLGGQYLRVGKAVTP 287
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 126 (49.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 48/194 (24%), Positives = 78/194 (40%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG + F +V + L E+DG K+ P K +R PK+V
Sbjct: 61 MKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGK--KVDP-KVAFPRRAH---PKMV 114
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G LS T ED+K F I +K+T RG+ V F +
Sbjct: 115 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK 174
Query: 120 ALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSA--GLGTSNDADNS 177
++ + + V+ A P + + + +L + A D+ GLGT + +
Sbjct: 175 VCEIHFHEINNKMVECKKAQPKEVMLPA---NLAKTRAAGRSAYDNIMWGLGTLPEGFPA 231
Query: 178 GAVTSNVAANAGSG 191
A + A SG
Sbjct: 232 AAYAAYAAGRGYSG 245
>POMBASE|SPAC3G6.04 [details] [associations]
symbol:rnp24 "RNA-binding protein Rnp24" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC3G6.04 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 HOGENOM:HOG000193653
OrthoDB:EOG47DDRF EMBL:U24430 EMBL:AB027862 PIR:T38723
RefSeq:NP_594970.1 ProteinModelPortal:Q09100 STRING:Q09100
EnsemblFungi:SPAC3G6.04.1 GeneID:2542965 KEGG:spo:SPAC3G6.04
NextBio:20804000 Uniprot:Q09100
Length = 369
Score = 126 (49.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 36/124 (29%), Positives = 65/124 (52%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDG--LFLKI------QPYK-ATKAKRTSDFTPKIV 60
+G A ++F TE A+K AL ++G + +K +P K A +T+
Sbjct: 165 KGFAYVDFATEDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSSKK 224
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
E + +++GNL ++ T+ DLK+ F +I +R T ++TG+ +G+ VDF D +
Sbjct: 225 EPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMK 284
Query: 120 ALKL 123
A++L
Sbjct: 285 AMEL 288
>SGD|S000006316 [details] [associations]
symbol:MRD1 "Essential conserved small ribosomal subunit
(40s) synthesis factor" species:4932 "Saccharomyces cerevisiae"
[GO:0005730 "nucleolus" evidence=IDA] [GO:0042134 "rRNA primary
transcript binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030686 "90S preribosome" evidence=IDA] [GO:0000480
"endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000472
"endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA
from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000447
"endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S
rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0034462 "small-subunit processome assembly"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000006316 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0030686 GO:GO:0000447 GO:GO:0000472 eggNOG:COG0724
EMBL:U32445 GO:GO:0000480 GO:GO:0034462 KO:K14787
HOGENOM:HOG000211156 OrthoDB:EOG4J40R3 OMA:VFREKNV PIR:S59777
RefSeq:NP_015437.1 ProteinModelPortal:Q06106 SMR:Q06106
DIP:DIP-6281N IntAct:Q06106 MINT:MINT-600745 STRING:Q06106
PaxDb:Q06106 PeptideAtlas:Q06106 EnsemblFungi:YPR112C GeneID:856228
KEGG:sce:YPR112C CYGD:YPR112c GeneTree:ENSGT00700000104575
NextBio:981470 Genevestigator:Q06106 GermOnline:YPR112C
Uniprot:Q06106
Length = 887
Score = 131 (51.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 59/243 (24%), Positives = 98/243 (40%)
Query: 42 QPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKET 100
QP +A K + + + R+++ N+ + EED +KLFS ++ + + T
Sbjct: 323 QPERAVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRT 382
Query: 101 GEFRGYAHVDFSDSLSLSMA-LKLDQEVVRGRPVKISCAVPPKKG----INSKSRSLPSN 155
G+ +G+A+V F DS + A ++LD+++ +GR + I K + K+ L
Sbjct: 383 GQSKGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHILPGEEKKSHRLDEFDLKNMPLKKQ 442
Query: 156 KRATSKVTDSAGLGTSNDAD-NSGAVTSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCY 214
K K S + N N AV +VAA G S + ID S +++
Sbjct: 443 KELKRKAAASRQTFSWNSLYMNQDAVLGSVAAKLGLEKSQL---IDAENSSSAVKQALA- 498
Query: 215 ECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRTGNFADNAGLGTTNVSDNAGLSAVSGK 274
E G + K D T + S N N GTT + + GK
Sbjct: 499 EAHVIGDVRKYFESKGVDLTKFSQLKSTNQRDDKVILVKNFPFGTTR-EELGEMFLPYGK 557
Query: 275 IRR 277
+ R
Sbjct: 558 LER 560
>UNIPROTKB|A7MBG9 [details] [associations]
symbol:WBSCR1 "WBSCR1 protein" species:9913 "Bos taurus"
[GO:0048589 "developmental growth" evidence=IEA] [GO:0019953
"sexual reproduction" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00530000063406 IPI:IPI00691331
UniGene:Bt.57927 UniGene:Bt.89526 HOVERGEN:HBG018193
EMBL:DAAA02058194 EMBL:BC151552 SMR:A7MBG9
Ensembl:ENSBTAT00000064159 OMA:PNMDFRE Uniprot:A7MBG9
Length = 222
Score = 121 (47.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D I S+R +K+T +F+G+ +V+F + SL AL D
Sbjct: 45 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 104
Query: 127 VVRGRPVKISCA 138
++ R +++ A
Sbjct: 105 LLGDRSLRVDIA 116
>FB|FBgn0015621 [details] [associations]
symbol:Clp "Clipper" species:7227 "Drosophila melanogaster"
[GO:0004521 "endoribonuclease activity" evidence=IDA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0006378
"mRNA polyadenylation" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0022008
GO:GO:0046872 GO:GO:0008270 GO:GO:0006378 GO:GO:0003676
GO:GO:0004521 Gene3D:4.10.60.10 GO:GO:0005847 GO:GO:0006379
EMBL:U26549 ProteinModelPortal:Q24081 SMR:Q24081 STRING:Q24081
PRIDE:Q24081 FlyBase:FBgn0015621 InParanoid:Q24081
OrthoDB:EOG4XKSPS ArrayExpress:Q24081 Bgee:Q24081 Uniprot:Q24081
Length = 296
Score = 124 (48.7 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 28/95 (29%), Positives = 48/95 (50%)
Query: 212 TCYECGEKGHLSSACLKKTADQTMVTGKVS--DNAGSRTGNFADNAGL--GTTNVSDN-- 265
TC+ CGE GH +++C K+ ++ D++G +G ++ ++G G ++ N
Sbjct: 190 TCHYCGELGHKANSC-KQYVGSLEHRNNINAMDHSGGHSGGYSGHSGHIEGADDMQSNHH 248
Query: 266 -----AGLSAVSGKIRRRTCYECGEKGHLSSACPK 295
G V + TCY+CG KGH ++ CPK
Sbjct: 249 SQPHGPGFVKVPTPLEEITCYKCGNKGHYANKCPK 283
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 53/215 (24%), Positives = 99/215 (46%)
Query: 7 GKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKI---QPYKATK--AKRTS---DFTPK 58
G+ G ++ R+E V+RAL LD M G ++++ +K + AKR+ +F +
Sbjct: 326 GRNSGYVYVDLRSEAEVERALRLDKDYMGGRYIEVFRANNFKNDRRSAKRSEMEKNFVRE 385
Query: 59 I--------VEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHV 109
+ V R++I N+ + TEEDLK+LFS +S + F + T + +G+A V
Sbjct: 386 LKDDEEEEDVAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFV 445
Query: 110 DFS-DSLSLSMALKLDQEVVRGRPVKISCA-VPPKKGINSKSRSLPSNKRATSKVTDSAG 167
+ ++S +LD +GR + + + + +K S+ + D A
Sbjct: 446 TYMIPENAVSALAQLDGHTFQGRVLHVMASRLKKEKADQGPDAPGSSSYKRKKDAKDKAA 505
Query: 168 LGTSNDADN----SGAVTSNVAANAGSGTSDVTEH 198
G+S++ + + AV +A + S V +H
Sbjct: 506 SGSSHNWNTLFLGTSAVADAIAEKYNTTKSQVLDH 540
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 125 (49.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 35/140 (25%), Positives = 70/140 (50%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEM-DGLFLKI-QPYKATKAKRTSDFTPKIVEGY 63
T K +G A + + A + AL S M G +K+ +P +A+ D + +
Sbjct: 164 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 223
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
NRIY+ ++ D++++D+K +F KI S + TG+ +GY +++ + S A+
Sbjct: 224 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 283
Query: 123 -LDQEVVRGRPVKISCAVPP 141
++ + G+ +++ AV P
Sbjct: 284 SMNLFDLGGQYLRVGKAVTP 303
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 124 (48.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 36/140 (25%), Positives = 65/140 (46%)
Query: 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVE 61
T P TG+ RG + F+ +V + L L ++DG + + KA K K PK
Sbjct: 62 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP----PK--- 114
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
++++G LS D +EE +K+ F +I ++ + +T E RG+ + ++D +
Sbjct: 115 ---KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 171
Query: 121 LKLDQEVVRGRPVKISCAVP 140
L+ + +I A P
Sbjct: 172 LESRYHQIGSGKCEIKVAQP 191
>UNIPROTKB|Q1JPH6 [details] [associations]
symbol:EIF4H "Eukaryotic translation initiation factor 4H"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0048589 "developmental growth"
evidence=IEA] [GO:0019953 "sexual reproduction" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0048471 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003743
EMBL:BT025377 EMBL:BT030478 IPI:IPI00691331 RefSeq:NP_001069220.1
UniGene:Bt.57927 UniGene:Bt.89526 ProteinModelPortal:Q1JPH6
SMR:Q1JPH6 PRIDE:Q1JPH6 GeneID:517409 KEGG:bta:517409 CTD:7458
HOVERGEN:HBG018193 NextBio:20872431 ArrayExpress:Q1JPH6
Uniprot:Q1JPH6
Length = 228
Score = 121 (47.7 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D I S+R +K+T +F+G+ +V+F + SL AL D
Sbjct: 45 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 104
Query: 127 VVRGRPVKISCA 138
++ R +++ A
Sbjct: 105 LLGDRSLRVDIA 116
>UNIPROTKB|I3L594 [details] [associations]
symbol:EIF4H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 CTD:7458 EMBL:FP340223
RefSeq:NP_001230377.1 UniGene:Ssc.54702 Ensembl:ENSSSCT00000029656
GeneID:100627717 KEGG:ssc:100627717 Uniprot:I3L594
Length = 228
Score = 121 (47.7 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D I S+R +K+T +F+G+ +V+F + SL AL D
Sbjct: 45 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 104
Query: 127 VVRGRPVKISCA 138
++ R +++ A
Sbjct: 105 LLGDRSLRVDIA 116
>TAIR|locus:2135892 [details] [associations]
symbol:EMB140 "EMBRYO DEFECTIVE 140" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=NAS] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] InterPro:IPR000504
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 SMART:SM00386 EMBL:CP002687
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR008669 Pfam:PF05391
OMA:SQAVMKM IPI:IPI00526863 RefSeq:NP_194158.3 UniGene:At.32361
ProteinModelPortal:F4JQ75 SMR:F4JQ75 PRIDE:F4JQ75
EnsemblPlants:AT4G24270.2 GeneID:828529 KEGG:ath:AT4G24270
PhylomeDB:F4JQ75 Uniprot:F4JQ75
Length = 817
Score = 130 (50.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 38/129 (29%), Positives = 65/129 (50%)
Query: 57 PKIVEGYNRIYIGNLSWDITEEDLKKLFSDCK-ISSLRFGTNKETGEFRGYAHVDFSDSL 115
PK+ +I NLS EED++K F D + S+R +K+TG+ RG A+ DF D
Sbjct: 644 PKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVDDE 703
Query: 116 SLSMALKLDQEVVRGRPVKISCAVPPKKGINSKSR----SLPSNKRATSKVTDSAG--LG 169
L+ A+ ++++ G+ + I+ + PKKG +R N + S +++ A LG
Sbjct: 704 HLAAAIAKNRKMFFGKKISIARS-NPKKGKKEFTRRGNVDGSGNSKDPSLISEKAKAPLG 762
Query: 170 TSNDADNSG 178
+ + G
Sbjct: 763 GETEGERKG 771
>UNIPROTKB|F8VP89 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021042
ProteinModelPortal:F8VP89 SMR:F8VP89 Ensembl:ENST00000552490
ArrayExpress:F8VP89 Bgee:F8VP89 Uniprot:F8VP89
Length = 275
Score = 123 (48.4 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 29/100 (29%), Positives = 52/100 (52%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGE-FRGYAHVDFSDSLSLSMALKLDQ 125
++GNL +D+TEE +K+ F IS++R E +G+ + +F D SL AL L++
Sbjct: 99 FLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE 158
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDS 165
E + R +++ A + + RS ++ S TD+
Sbjct: 159 ESLGNRRIRVDVA-DQAQDKDRDDRSFGRDRNRDSDKTDT 197
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 124 (48.7 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 36/140 (25%), Positives = 65/140 (46%)
Query: 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVE 61
T P TG+ RG + F+ +V + L L ++DG + + KA K K PK
Sbjct: 84 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP----PK--- 136
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
++++G LS D +EE +K+ F +I ++ + +T E RG+ + ++D +
Sbjct: 137 ---KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 193
Query: 121 LKLDQEVVRGRPVKISCAVP 140
L+ + +I A P
Sbjct: 194 LESRYHQIGSGKCEIKVAQP 213
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 124 (48.7 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 36/140 (25%), Positives = 65/140 (46%)
Query: 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVE 61
T P TG+ RG + F+ +V + L L ++DG + + KA K K PK
Sbjct: 84 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP----PK--- 136
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
++++G LS D +EE +K+ F +I ++ + +T E RG+ + ++D +
Sbjct: 137 ---KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 193
Query: 121 LKLDQEVVRGRPVKISCAVP 140
L+ + +I A P
Sbjct: 194 LESRYHQIGSGKCEIKVAQP 213
>UNIPROTKB|E2R3E1 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011249 OMA:AEGHSKS EMBL:AAEX03002684
Ensembl:ENSCAFT00000018260 Uniprot:E2R3E1
Length = 429
Score = 126 (49.4 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 39/161 (24%), Positives = 82/161 (50%)
Query: 13 AIINFRTEGAVKRALALDGSEM-DGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNL 71
A + F+ E + +AL +G+++ DG +++ A TS + V ++GNL
Sbjct: 246 AYVVFKDESSATKALKRNGAQIADGFRIRVD-----LASETSSRDKRSV------FVGNL 294
Query: 72 SWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRG 130
+ + E +++ F DC I ++R ++ TG RG+ +V F ++ ++ +ALKL+ + G
Sbjct: 295 PYKVEESAVEEHFLDCGSIVAVRIVRDRVTGVGRGFGYVLFENTDAVHLALKLNNSELMG 354
Query: 131 RPVKISCAVPPKK---GINSKSRSLPSNKRATSKVTDSAGL 168
R +++ +V +K N +++ K + + + GL
Sbjct: 355 RKLRVMRSVNKEKLKPNSNPSLKNVGKPKEGLNSASKNVGL 395
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 104 (41.7 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 23/80 (28%), Positives = 49/80 (61%)
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+G++ +Y+GN+ + TEE++ F+ ++++R ++ETG RG+A V+FS+
Sbjct: 4 QGFS-VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQR 62
Query: 120 ALK-LDQEVVRGRPVKISCA 138
A++ L+ GR ++++ A
Sbjct: 63 AVEQLNGVAFNGRNLRVNYA 82
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 122 (48.0 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 35/138 (25%), Positives = 65/138 (47%)
Query: 4 PDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGY 63
P+TG+ RG I F+ G+V++ L +DG I P KA K+ +
Sbjct: 35 PNTGRSRGFGFILFKEPGSVEKVLEQKEHRLDGRL--IDPKKAMAMKK---------DPV 83
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
+I++G L+ + TEE +++ F + +I ++ + +T + RG+ + F + + L+
Sbjct: 84 KKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 123 LDQEVVRGRPVKISCAVP 140
V G +I A P
Sbjct: 144 KKFHNVSGSKCEIKVAQP 161
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 125 (49.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 35/140 (25%), Positives = 70/140 (50%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEM-DGLFLKI-QPYKATKAKRTSDFTPKIVEGY 63
T K +G A + + A + AL S M G +K+ +P +A+ D + +
Sbjct: 58 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 117
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
NRIY+ ++ D++++D+K +F KI S + TG+ +GY +++ + S A+
Sbjct: 118 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 177
Query: 123 -LDQEVVRGRPVKISCAVPP 141
++ + G+ +++ AV P
Sbjct: 178 SMNLFDLGGQYLRVGKAVTP 197
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 122 (48.0 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 32/129 (24%), Positives = 59/129 (45%)
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
++I++G +S+ E L++ FS ++ + ++ETG RG+A V F+ + S A++
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 123 LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVTS 182
LD + + GR ++++ A G + P S A G S
Sbjct: 94 LDGQDLHGRRIRVNYATERGSGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGYGGNS 153
Query: 183 NVAANAGSG 191
+ + NAG G
Sbjct: 154 SYSGNAGGG 162
>CGD|CAL0002199 [details] [associations]
symbol:orf19.7097 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199 GO:GO:0000166
GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000024
eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465 RefSeq:XP_720388.1
RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1 SMR:Q5AFH1
STRING:Q5AFH1 GeneID:3637979 GeneID:3703864 KEGG:cal:CaO19.7097
KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 116 (45.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 31/94 (32%), Positives = 54/94 (57%)
Query: 66 IYIGNLSWDITEEDLKKLFSDCKI-SSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-L 123
IYIGN+ + T +L++ FS + + + TNK TG+ +G+A+++F+D+ +++ A+ L
Sbjct: 65 IYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATL 124
Query: 124 DQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKR 157
D R R +K+S GI+ K R P R
Sbjct: 125 DGSTFRERQLKVSAKRTNIPGISVK-RGFPGRGR 157
>UNIPROTKB|Q5AFH1 [details] [associations]
symbol:SGN12 "Putative uncharacterized protein SGN12"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0002199
GO:GO:0000166 GO:GO:0042493 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000024 eggNOG:COG0724 KO:K14396 HOGENOM:HOG000208465
RefSeq:XP_720388.1 RefSeq:XP_888659.1 ProteinModelPortal:Q5AFH1
SMR:Q5AFH1 STRING:Q5AFH1 GeneID:3637979 GeneID:3703864
KEGG:cal:CaO19.7097 KEGG:cal:CaO19_7097 Uniprot:Q5AFH1
Length = 187
Score = 116 (45.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 31/94 (32%), Positives = 54/94 (57%)
Query: 66 IYIGNLSWDITEEDLKKLFSDCKI-SSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-L 123
IYIGN+ + T +L++ FS + + + TNK TG+ +G+A+++F+D+ +++ A+ L
Sbjct: 65 IYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATL 124
Query: 124 DQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKR 157
D R R +K+S GI+ K R P R
Sbjct: 125 DGSTFRERQLKVSAKRTNIPGISVK-RGFPGRGR 157
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 124 (48.7 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 36/140 (25%), Positives = 65/140 (46%)
Query: 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVE 61
T P TG+ RG + F+ +V + L L ++DG + + KA K K PK
Sbjct: 181 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP----PK--- 233
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
++++G LS D +EE +K+ F +I ++ + +T E RG+ + ++D +
Sbjct: 234 ---KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 290
Query: 121 LKLDQEVVRGRPVKISCAVP 140
L+ + +I A P
Sbjct: 291 LESRYHQIGSGKCEIKVAQP 310
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 124 (48.7 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 36/140 (25%), Positives = 65/140 (46%)
Query: 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVE 61
T P TG+ RG + F+ +V + L L ++DG + + KA K K PK
Sbjct: 181 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP----PK--- 233
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
++++G LS D +EE +K+ F +I ++ + +T E RG+ + ++D +
Sbjct: 234 ---KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 290
Query: 121 LKLDQEVVRGRPVKISCAVP 140
L+ + +I A P
Sbjct: 291 LESRYHQIGSGKCEIKVAQP 310
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 124 (48.7 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 36/140 (25%), Positives = 65/140 (46%)
Query: 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVE 61
T P TG+ RG + F+ +V + L L ++DG + + KA K K PK
Sbjct: 181 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKEP----PK--- 233
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
++++G LS D +EE +K+ F +I ++ + +T E RG+ + ++D +
Sbjct: 234 ---KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 290
Query: 121 LKLDQEVVRGRPVKISCAVP 140
L+ + +I A P
Sbjct: 291 LESRYHQIGSGKCEIKVAQP 310
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 125 (49.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 35/140 (25%), Positives = 70/140 (50%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEM-DGLFLKI-QPYKATKAKRTSDFTPKIVEGY 63
T K +G A + + A + AL S M G +K+ +P +A+ D + +
Sbjct: 129 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 188
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
NRIY+ ++ D++++D+K +F KI S + TG+ +GY +++ + S A+
Sbjct: 189 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 248
Query: 123 -LDQEVVRGRPVKISCAVPP 141
++ + G+ +++ AV P
Sbjct: 249 SMNLFDLGGQYLRVGKAVTP 268
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 121 (47.7 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 39/141 (27%), Positives = 67/141 (47%)
Query: 4 PDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK---AKRTSDF---T 56
P TG+ RG + + + K A+A LDG+E+ G ++++ Y +R + T
Sbjct: 144 PQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVR-YSVDMNPGTRRNPEVLNST 202
Query: 57 PKIV---EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFS 112
PK + E +++Y+GNL W + L+ FS I S R +++TG R +A + F+
Sbjct: 203 PKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFT 262
Query: 113 DSLSLSMALKLDQEVVRGRPV 133
AL + GR +
Sbjct: 263 SGEERDAALSFNGTQYEGRRI 283
>UNIPROTKB|I3LCE0 [details] [associations]
symbol:LOC100620185 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:FP102819
Ensembl:ENSSSCT00000030389 OMA:CCGEINR Uniprot:I3LCE0
Length = 295
Score = 121 (47.7 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 27/96 (28%), Positives = 51/96 (53%)
Query: 56 TPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDS 114
T K+ + +Y+GN+ ++ T +L+ F+ C +I + +K +G +GYA+++F+
Sbjct: 154 TEKVEADHRSVYVGNVDYEGTARELEAYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATE 213
Query: 115 LSLSMALKLDQEVVRGRPVKISCAVPPKKGINSKSR 150
S ++LD V RG +K+ GI+S R
Sbjct: 214 SSAQAPVELDNSVFRGPVIKVLPKRTNFPGISSTDR 249
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 125 (49.1 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 35/140 (25%), Positives = 70/140 (50%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEM-DGLFLKI-QPYKATKAKRTSDFTPKIVEGY 63
T K +G A + + A + AL S M G +K+ +P +A+ D + +
Sbjct: 137 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 196
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
NRIY+ ++ D++++D+K +F KI S + TG+ +GY +++ + S A+
Sbjct: 197 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 256
Query: 123 -LDQEVVRGRPVKISCAVPP 141
++ + G+ +++ AV P
Sbjct: 257 SMNLFDLGGQYLRVGKAVTP 276
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 125 (49.1 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 35/140 (25%), Positives = 70/140 (50%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEM-DGLFLKI-QPYKATKAKRTSDFTPKIVEGY 63
T K +G A + + A + AL S M G +K+ +P +A+ D + +
Sbjct: 137 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 196
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
NRIY+ ++ D++++D+K +F KI S + TG+ +GY +++ + S A+
Sbjct: 197 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 256
Query: 123 -LDQEVVRGRPVKISCAVPP 141
++ + G+ +++ AV P
Sbjct: 257 SMNLFDLGGQYLRVGKAVTP 276
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 123 (48.4 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 42/158 (26%), Positives = 66/158 (41%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG I F +V + LA E+D I P K +R PK+V
Sbjct: 53 MRDPTTKRSRGFGFITFADVSSVDKVLAQPHHELDSK--TIDP-KVAFPRRAQ---PKMV 106
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G LS ED+K+ F K+ +K T RG+ V F + +
Sbjct: 107 TRTKKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEK 166
Query: 120 ALKLDQEVVRGRPVKISCAVPPK----KGINSKSRSLP 153
++ + + V+ A P + G ++RSLP
Sbjct: 167 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARSLP 204
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 125 (49.1 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 35/140 (25%), Positives = 70/140 (50%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEM-DGLFLKI-QPYKATKAKRTSDFTPKIVEGY 63
T K +G A + + A + AL S M G +K+ +P +A+ D + +
Sbjct: 150 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 209
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
NRIY+ ++ D++++D+K +F KI S + TG+ +GY +++ + S A+
Sbjct: 210 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 269
Query: 123 -LDQEVVRGRPVKISCAVPP 141
++ + G+ +++ AV P
Sbjct: 270 SMNLFDLGGQYLRVGKAVTP 289
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 125 (49.1 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 35/140 (25%), Positives = 70/140 (50%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEM-DGLFLKI-QPYKATKAKRTSDFTPKIVEGY 63
T K +G A + + A + AL S M G +K+ +P +A+ D + +
Sbjct: 166 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 225
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
NRIY+ ++ D++++D+K +F KI S + TG+ +GY +++ + S A+
Sbjct: 226 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 285
Query: 123 -LDQEVVRGRPVKISCAVPP 141
++ + G+ +++ AV P
Sbjct: 286 SMNLFDLGGQYLRVGKAVTP 305
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 125 (49.1 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 35/140 (25%), Positives = 70/140 (50%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEM-DGLFLKI-QPYKATKAKRTSDFTPKIVEGY 63
T K +G A + + A + AL S M G +K+ +P +A+ D + +
Sbjct: 167 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 226
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
NRIY+ ++ D++++D+K +F KI S + TG+ +GY +++ + S A+
Sbjct: 227 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 286
Query: 123 -LDQEVVRGRPVKISCAVPP 141
++ + G+ +++ AV P
Sbjct: 287 SMNLFDLGGQYLRVGKAVTP 306
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 125 (49.1 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 35/140 (25%), Positives = 70/140 (50%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEM-DGLFLKI-QPYKATKAKRTSDFTPKIVEGY 63
T K +G A + + A + AL S M G +K+ +P +A+ D + +
Sbjct: 171 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 230
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
NRIY+ ++ D++++D+K +F KI S + TG+ +GY +++ + S A+
Sbjct: 231 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 290
Query: 123 -LDQEVVRGRPVKISCAVPP 141
++ + G+ +++ AV P
Sbjct: 291 SMNLFDLGGQYLRVGKAVTP 310
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 125 (49.1 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 35/140 (25%), Positives = 70/140 (50%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEM-DGLFLKI-QPYKATKAKRTSDFTPKIVEGY 63
T K +G A + + A + AL S M G +K+ +P +A+ D + +
Sbjct: 171 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 230
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
NRIY+ ++ D++++D+K +F KI S + TG+ +GY +++ + S A+
Sbjct: 231 NRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVS 290
Query: 123 -LDQEVVRGRPVKISCAVPP 141
++ + G+ +++ AV P
Sbjct: 291 SMNLFDLGGQYLRVGKAVTP 310
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 108 (43.1 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
+RI++G LSWD+TE L+ F KI+ + ++TG RG+ + F+D A+K
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 123 -LDQEVVRGRPVKISCAVPPKKG 144
+ + + + ++ A PK G
Sbjct: 72 HMHGRELGNKVISVNKA-EPKVG 93
Score = 51 (23.0 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 256 GLGTTNVSDNAGLSAVSGKIRRRTCYECGEKGHLSSACPKKTAD 299
G + G S+ GK C++C GH + CP T D
Sbjct: 94 GEDVDQLKKGGGYSS-RGKGTEDECFKCRRPGHWARDCPS-TGD 135
Score = 42 (19.8 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 206 GKIRRRTCYECGEKGHLSSACLKKTAD 232
GK C++C GH + C T D
Sbjct: 110 GKGTEDECFKCRRPGHWARDC-PSTGD 135
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 101 (40.6 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 30/114 (26%), Positives = 51/114 (44%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P+T + RG + + T V A+ ++DG ++P +A R P
Sbjct: 1 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV--VEPKRAVS--REDSQRPGAH 56
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSD 113
+I++G + D E L+ F KI + T++ +G+ RG+A V F D
Sbjct: 57 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 110
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 101 (40.6 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 69 GNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDS-LSLSMALKLDQE 126
GN+ ++ TEE LK +FS+ + S R ++ETG+ +GY ++ D +LS L+
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 127 VVRGRPVKISCAVPPK 142
GR +++ A K
Sbjct: 62 EFSGRALRVDNAASEK 77
>MGI|MGI:1098653 [details] [associations]
symbol:Rbm34 "RNA binding motif protein 34" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1098653 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 KO:K14837 CTD:23029 HOVERGEN:HBG052167
OrthoDB:EOG46DM2Z EMBL:AK078099 IPI:IPI00225915 RefSeq:NP_766350.2
UniGene:Mm.28199 ProteinModelPortal:Q8C5L7 SMR:Q8C5L7
PhosphoSite:Q8C5L7 PRIDE:Q8C5L7 GeneID:52202 KEGG:mmu:52202
InParanoid:Q8C5L7 NextBio:308648 Bgee:Q8C5L7 CleanEx:MM_RBM34
Genevestigator:Q8C5L7 GermOnline:ENSMUSG00000033931 Uniprot:Q8C5L7
Length = 375
Score = 122 (48.0 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 36/133 (27%), Positives = 70/133 (52%)
Query: 13 AIINFRTEGAVKRALALDGSEM-DGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNL 71
A + F+ E A +AL +G+++ +G +++ T A R +++GNL
Sbjct: 250 AYVVFKDESAAAKALQRNGAQIAEGFRIRVDLASET-ASRDK----------RSVFVGNL 298
Query: 72 SWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRG 130
+ I + L++ F DC I ++R N TG RG+ +V F ++ ++ +ALKL+ + G
Sbjct: 299 PYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMG 358
Query: 131 RPVKISCAVPPKK 143
R +++ +V +K
Sbjct: 359 RKLRVMRSVNKEK 371
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 124 (48.7 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 38/144 (26%), Positives = 71/144 (49%)
Query: 45 KATKAKRTSDFTPKIVEGYN-RIYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEF 103
KA + + K EG + +++GNLSW++TEE L + F S R T ++TG
Sbjct: 257 KAEEEPAAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGRS 316
Query: 104 RGYAHVDFSDSLSLSMALK-LDQEVVRGRPVKISCAV--PPKK---GINSKSRSLP-SNK 156
RG+ +V+F+++ + A + + + + GR + + A P K G ++++ S
Sbjct: 317 RGFGYVEFTNAADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFG 376
Query: 157 RATSKVTDSAGLGTSNDADNSGAV 180
TS +D+ +G + N +V
Sbjct: 377 DQTSPESDTLFVGNLPFSANEDSV 400
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 121 (47.7 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 44/170 (25%), Positives = 69/170 (40%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG + F + V + LA E+D I P K +R PK+V
Sbjct: 19 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSK--TIDP-KVAFPRRAQ---PKMV 72
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G LS + T ED+K+ F K+ +K T RG+ V F +
Sbjct: 73 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 132
Query: 120 ALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLG 169
++ + + V+ A P K + S + S R D+ LG
Sbjct: 133 VCEIHFHEINNKMVECKKAQP--KEVMSPTGSARGRSRVMPYGMDAFMLG 180
>UNIPROTKB|F1NIM5 [details] [associations]
symbol:RBM34 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000011249
OMA:AEGHSKS EMBL:AADN02051930 IPI:IPI00589396
Ensembl:ENSGALT00000023153 Uniprot:F1NIM5
Length = 392
Score = 122 (48.0 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 28/107 (26%), Positives = 65/107 (60%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
+++GNL++DI++ +++ F+DC + ++R ++++G +G+ +V F ++ ++ +ALKL+
Sbjct: 254 VFLGNLAYDISDSAVREHFADCGDVVAVRIVRDRQSGMGKGFGYVLFENTDAVHLALKLN 313
Query: 125 QEVVRGRPVKISCAVP----PKKGINSKSRSLPSNKRATSKVTDSAG 167
+ GR +++ V P++ S+ R P + RA S + + G
Sbjct: 314 NSDLMGRKLRVKRCVEKGRAPQRSTTSRPRG-PMD-RAQSTLRNRRG 358
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 121 (47.7 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 44/170 (25%), Positives = 69/170 (40%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG + F + V + LA E+D I P K +R PK+V
Sbjct: 32 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSK--TIDP-KVAFPRRAQ---PKMV 85
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G LS + T ED+K+ F K+ +K T RG+ V F +
Sbjct: 86 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 145
Query: 120 ALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLG 169
++ + + V+ A P K + S + S R D+ LG
Sbjct: 146 VCEIHFHEINNKMVECKKAQP--KEVMSPTGSARGRSRVMPYGMDAFMLG 193
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 127 (49.8 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 37/113 (32%), Positives = 59/113 (52%)
Query: 43 PYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETG 101
P K K K+ K+ + R+ I NLS+ +E+DLK +FS I + K G
Sbjct: 98 PEKELKPKKA-----KVADKKARLIIRNLSFKCSEDDLKTVFSQFGTILEVNI-PRKPDG 151
Query: 102 EFRGYAHVDFSDSLSLSMALK-LDQEVVRGRPVKISCAVPPKKGINSKSRSLP 153
+ RG+A V F + L ALK ++ + ++GR V + AV K +++S S+P
Sbjct: 152 KMRGFAFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKSTQSASIP 204
Score = 41 (19.5 bits), Expect = 8.8e-05, Sum P(2) = 8.8e-05
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 274 KIRRRTCYECGEKGHLSSA-CPKKTADQTNSTTIQVEQL 311
K + +T ++ EK LSS P+K A + N T ++ QL
Sbjct: 693 KPKPQTNHQKQEKQKLSSKQVPRKKA-KGNKTEVRFNQL 730
Score = 40 (19.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 285 EKGHLSSACPKKTADQTNSTTIQVEQL 311
+KG + PKK QTN + ++L
Sbjct: 682 DKGKMKPLPPKKPKPQTNHQKQEKQKL 708
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 120 (47.3 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 35/137 (25%), Positives = 64/137 (46%)
Query: 5 DTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYN 64
+TG+ RG I F+ +V R L +DG +I P +A K+ E
Sbjct: 81 NTGRSRGFGFILFKESDSVDRVLQQKEHRLDGR--QIDPKRAMAIKK---------EPVK 129
Query: 65 RIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKL 123
+I++G L+ + TEE +++ F +I ++ T+ +T + RG+ + F + ++ L+
Sbjct: 130 KIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEK 189
Query: 124 DQEVVRGRPVKISCAVP 140
V G +I A P
Sbjct: 190 KYHNVCGSKCEIKIAQP 206
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 121 (47.7 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 44/170 (25%), Positives = 69/170 (40%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG + F + V + LA E+D I P K +R PK+V
Sbjct: 52 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSK--TIDP-KVAFPRRAQ---PKMV 105
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G LS + T ED+K+ F K+ +K T RG+ V F +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 120 ALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLG 169
++ + + V+ A P K + S + S R D+ LG
Sbjct: 166 VCEIHFHEINNKMVECKKAQP--KEVMSPTGSARGRSRVMPYGMDAFMLG 213
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 121 (47.7 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 44/170 (25%), Positives = 69/170 (40%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG + F + V + LA E+D I P K +R PK+V
Sbjct: 52 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSK--TIDP-KVAFPRRAQ---PKMV 105
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G LS + T ED+K+ F K+ +K T RG+ V F +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 120 ALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLG 169
++ + + V+ A P K + S + S R D+ LG
Sbjct: 166 VCEIHFHEINNKMVECKKAQP--KEVMSPTGSARGRSRVMPYGMDAFMLG 213
>UNIPROTKB|G4N4A8 [details] [associations]
symbol:MGG_05948 "Zinc knuckle domain-containing protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 EMBL:CM001233 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K09250
RefSeq:XP_003711783.1 ProteinModelPortal:G4N4A8
EnsemblFungi:MGG_05948T0 GeneID:2684027 KEGG:mgr:MGG_05948
Uniprot:G4N4A8
Length = 199
Score = 115 (45.5 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 30/86 (34%), Positives = 39/86 (45%)
Query: 213 CYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRTGNFADNAGLGTTNVSDNAGLSAVS 272
CY+CGE GH++ C K G S G G + AG G T S G+ +S
Sbjct: 94 CYKCGEVGHIARNC-SKGGYGGGGGGGYSGGGGGYGGGYGGGAG-GKTCYSCG-GVGHMS 150
Query: 273 GK-IRRRTCYECGEKGHLSSACPKKT 297
+ CY CGE GH S C K++
Sbjct: 151 RDCVNGSKCYNCGETGHFSRDCSKRS 176
Score = 109 (43.4 bits), Expect = 0.00052, P = 0.00052
Identities = 27/83 (32%), Positives = 39/83 (46%)
Query: 213 CYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRTGNFADNAGLGTTNVSDNAGLSAVS 272
CY CG +GH+S AC ++ DQ K+ S+ G+ + + G G S
Sbjct: 37 CYNCGGEGHISRACPEEPKDQ-----KICYRC-SQPGHISRDCPSGGAGGGGGGGGGQSS 90
Query: 273 GKIRRRTCYECGEKGHLSSACPK 295
G CY+CGE GH++ C K
Sbjct: 91 GA----ECYKCGEVGHIARNCSK 109
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 100 (40.3 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 29/109 (26%), Positives = 56/109 (51%)
Query: 28 ALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC 87
A++G ++ G +K+ + T + + D + +++G+LS +IT ED+K F+
Sbjct: 28 AMNGRKILGKEVKVN-WATTPSSQKKD-----TSNHFHVFVGDLSPEITTEDIKSAFAPF 81
Query: 88 -KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVK 134
KIS R + TG+ +GY V F + L A+ + + + GR ++
Sbjct: 82 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 130
>UNIPROTKB|F6XHX3 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
Ensembl:ENSCAFT00000017824 EMBL:AAEX03005604 Uniprot:F6XHX3
Length = 425
Score = 122 (48.0 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 38/132 (28%), Positives = 71/132 (53%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYN---RI 66
+GIA + F +V A+ L G + G+ + +Q +A K R + + +G + R+
Sbjct: 192 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK-NRLAAMANNLQKGSSGPMRL 250
Query: 67 YIGNLSWDITEEDLKKLFSDC-KIS-SLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-L 123
Y+G+L ++ITE+ L+ +F K+S ++++ T + AH FSDS AL+ L
Sbjct: 251 YVGSLHFNITEDMLRGIFEPFGKVSRNVQYTNESGTIKSNNRAHTKFSDSECARRALEQL 310
Query: 124 DQEVVRGRPVKI 135
+ + GRP+++
Sbjct: 311 NGFELAGRPMRV 322
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 43/180 (23%), Positives = 80/180 (44%)
Query: 6 TGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYN 64
T + G + F + A + L GS M QP++ A ++ + G +
Sbjct: 145 TSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPN---SDQPFRINWASFSTGEKRAVENGPD 201
Query: 65 -RIYIGNLSWDITEEDLKKLFSDC--KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL 121
+++G+LS D+T+ L + FSD + S + + TG +GY V F D S AL
Sbjct: 202 LSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRAL 261
Query: 122 -KLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTD-SAGLGTSNDADNSGA 179
+++ R +++ A P + N + S + A ++ S G G+ +D +++ A
Sbjct: 262 TEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNA 321
>POMBASE|SPAC16E8.06c [details] [associations]
symbol:nop12 "RNA-binding protein Nop12 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364
"rRNA processing" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC16E8.06c EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 KO:K14837
HOGENOM:HOG000157415 OMA:SIRYRSI OrthoDB:EOG4JHGQR PIR:T37786
RefSeq:NP_594218.1 ProteinModelPortal:O13741 STRING:O13741
EnsemblFungi:SPAC16E8.06c.1 GeneID:2542314 KEGG:spo:SPAC16E8.06c
NextBio:20803375 Uniprot:O13741
Length = 438
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 40/157 (25%), Positives = 79/157 (50%)
Query: 13 AIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLS 72
A I FR + + AL+L+G+ +F+ + + S P+ + +++GNL+
Sbjct: 229 AYIVFRDSSSARSALSLNGT----MFMD----RHLRVDSVSHPMPQDTK--RCVFVGNLA 278
Query: 73 WDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVV-RG 130
++ EE L + F DC I +R + +T +G+A++ F D++ + AL L+++ + G
Sbjct: 279 FEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLNEKKMPEG 338
Query: 131 RPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAG 167
R ++I A ++K +S+ +KR K G
Sbjct: 339 RTLRIMRAK------STKPKSITRSKRGDEKTRTLQG 369
>UNIPROTKB|J9P448 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
OMA:VTERLDG TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089
EMBL:AAEX03005604 Ensembl:ENSCAFT00000048864 Uniprot:J9P448
Length = 458
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 38/132 (28%), Positives = 71/132 (53%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYN---RI 66
+GIA + F +V A+ L G + G+ + +Q +A K R + + +G + R+
Sbjct: 220 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK-NRLAAMANNLQKGSSGPMRL 278
Query: 67 YIGNLSWDITEEDLKKLFSDC-KIS-SLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-L 123
Y+G+L ++ITE+ L+ +F K+S ++++ T + AH FSDS AL+ L
Sbjct: 279 YVGSLHFNITEDMLRGIFEPFGKVSRNVQYTNESGTIKSNNRAHTKFSDSECARRALEQL 338
Query: 124 DQEVVRGRPVKI 135
+ + GRP+++
Sbjct: 339 NGFELAGRPMRV 350
>CGD|CAL0004924 [details] [associations]
symbol:TIF3 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0002181 "cytoplasmic translation"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004924 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000064 EMBL:AACQ01000065 eggNOG:NOG238591
KO:K03258 RefSeq:XP_716672.1 RefSeq:XP_716731.1
ProteinModelPortal:Q5A4L8 STRING:Q5A4L8 GeneID:3641646
GeneID:3641707 KEGG:cal:CaO19.10927 KEGG:cal:CaO19.3423
Uniprot:Q5A4L8
Length = 455
Score = 119 (46.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 65 RIYIGNLSWDITEEDLKKLFSD---CK--ISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
R + NL W++ E ++ + F D K IS + +++TG RG+A V F+D L
Sbjct: 98 RARVSNLPWEVEESNVIRHFEDRMQAKDIISDIVLPKDRDTGRLRGFAFVTFNDRALLEE 157
Query: 120 ALKLDQEVVRGRPVKISCAVPPK 142
+L L +GR + ++ A PPK
Sbjct: 158 SLNLSMTEFQGRKIYVNVAAPPK 180
Score = 43 (20.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 142 KKGINSKSRSLPSNKRATSKVTDSAG 167
KK + + + + ++ATSK+T S G
Sbjct: 418 KKEVKESKQQIDNLQQATSKLTVSEG 443
>UNIPROTKB|Q5A4L8 [details] [associations]
symbol:TIF3 "Putative uncharacterized protein TIF3"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 CGD:CAL0004924
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000064
EMBL:AACQ01000065 eggNOG:NOG238591 KO:K03258 RefSeq:XP_716672.1
RefSeq:XP_716731.1 ProteinModelPortal:Q5A4L8 STRING:Q5A4L8
GeneID:3641646 GeneID:3641707 KEGG:cal:CaO19.10927
KEGG:cal:CaO19.3423 Uniprot:Q5A4L8
Length = 455
Score = 119 (46.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 65 RIYIGNLSWDITEEDLKKLFSD---CK--ISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
R + NL W++ E ++ + F D K IS + +++TG RG+A V F+D L
Sbjct: 98 RARVSNLPWEVEESNVIRHFEDRMQAKDIISDIVLPKDRDTGRLRGFAFVTFNDRALLEE 157
Query: 120 ALKLDQEVVRGRPVKISCAVPPK 142
+L L +GR + ++ A PPK
Sbjct: 158 SLNLSMTEFQGRKIYVNVAAPPK 180
Score = 43 (20.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 142 KKGINSKSRSLPSNKRATSKVTDSAG 167
KK + + + + ++ATSK+T S G
Sbjct: 418 KKEVKESKQQIDNLQQATSKLTVSEG 443
>ZFIN|ZDB-GENE-060629-1 [details] [associations]
symbol:eif4ba "eukaryotic translation initiation
factor 4Ba" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060629-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063406
EMBL:BX511107 IPI:IPI00861203 Ensembl:ENSDART00000087899
Bgee:F1QNK2 Uniprot:F1QNK2
Length = 615
Score = 123 (48.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 37/135 (27%), Positives = 61/135 (45%)
Query: 5 DTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYN 64
+T G ++ TE V RA +D S L P A + P+ Y
Sbjct: 43 ETDDLEGDVTTSWHTEDEVYRAPPIDRS-----ILPTAPRAAREPNVDRSRLPRSPP-YT 96
Query: 65 RIYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGE-FRGYAHVDFSDSLSLSMALKL 123
++GNL +D+TE+ +K F IS++R E +G+ + +F D SL AL L
Sbjct: 97 A-FLGNLPYDVTEDSIKNFFRGLSISAVRLPREPSNPERLKGFGYAEFDDVESLLQALSL 155
Query: 124 DQEVVRGRPVKISCA 138
++E + R +++ A
Sbjct: 156 NEENLGNRRIRVDIA 170
Score = 42 (19.8 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 140 PPKKG-INSKSRSLPSNKRATSKVTDSAGLGTS 171
PP++ +N K RS+P ++ + + S+G S
Sbjct: 320 PPQRPKLNLKPRSVPKDEEPSRGPSASSGRAAS 352
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 132 PVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVTSNVAANAGS- 190
P+K+ A PPK+ +K ++ SAG S ++D+ AV+ + AA S
Sbjct: 467 PLKVVPAPPPKENAWAKRSAM------------SAG---STESDSKPAVSPSSAAPPRSL 511
Query: 191 -GTSDVTE-HIDLSAVSGKIRR 210
G+ DV + + D + G +RR
Sbjct: 512 PGSGDVPQRNKDENKADG-VRR 532
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 35/131 (26%), Positives = 62/131 (47%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIG 69
R + + T A+A +DG +++ K A+ + P+ + +I++G
Sbjct: 49 RCFGFVTYSTSEEADAAMAARPHVVDGKNVEV---KRAVAREDAG-RPEALAKVKKIFVG 104
Query: 70 NLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVV 128
L DI E+DL + FS I T+K+TG+ RG+ V F D+ S A+ L ++
Sbjct: 105 GLKDDIEEKDLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHMI 164
Query: 129 RGRPVKISCAV 139
G V++ A+
Sbjct: 165 NGHKVEVKKAL 175
>UNIPROTKB|H0YJH9 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HGNC:HGNC:8565 Ensembl:ENST00000555295 Uniprot:H0YJH9
Length = 96
Score = 99 (39.9 bits), Expect = 0.00013, P = 0.00013
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 97 NKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNK 156
+K +G +G+A+++FSD S+ +L LD+ + RGR +K+ + GI++ R P
Sbjct: 6 DKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFP-RA 64
Query: 157 RATSKVTD 164
R ++ T+
Sbjct: 65 RYRARTTN 72
>UNIPROTKB|E7EX17 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 OMA:YAEFDDV EMBL:AC068888 IPI:IPI01022506
ProteinModelPortal:E7EX17 SMR:E7EX17 PRIDE:E7EX17
Ensembl:ENST00000420463 UCSC:uc010snu.2 ArrayExpress:E7EX17
Bgee:E7EX17 Uniprot:E7EX17
Length = 616
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 29/100 (29%), Positives = 52/100 (52%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGE-FRGYAHVDFSDSLSLSMALKLDQ 125
++GNL +D+TEE +K+ F IS++R E +G+ + +F D SL AL L++
Sbjct: 99 FLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE 158
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDS 165
E + R +++ A + + RS ++ S TD+
Sbjct: 159 ESLGNRRIRVDVA-DQAQDKDRDDRSFGRDRNRDSDKTDT 197
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 44/189 (23%), Positives = 88/189 (46%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEM-DGLFLKI-QPYKATKAKRTSDFTPKIVEGY 63
T K +G A + + A + AL S M G +K+ +P +A+ + + Y
Sbjct: 123 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPGSIGQAQPIIEQLAEEARAY 182
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSD-SLSLSMAL 121
NRIY+ ++ D++++D+K +F KI S TG+ +G+ +++ SL
Sbjct: 183 NRIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVS 242
Query: 122 KLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLG--TSNDADNSGA 179
++ + G+ +++ AV P + + + P + V +A T+ +A +G
Sbjct: 243 SMNLFDLGGQYLRVGKAVTPPMPLLTPTT--PGGLPPAAAVAAAAATAKITAQEAV-AGT 299
Query: 180 VTSNVAANA 188
V S++A+ A
Sbjct: 300 VLSSLASPA 308
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 44/170 (25%), Positives = 68/170 (40%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG + F + V + LA E+D I P K +R PK+V
Sbjct: 19 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSK--TIDP-KVAFPRRAQ---PKMV 72
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G LS + T ED+K F K+ +K T RG+ V F +
Sbjct: 73 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 132
Query: 120 ALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLG 169
++ + + V+ A P K + S + S R D+ LG
Sbjct: 133 VCEIHFHEINNKMVECKKAQP--KEVMSPTGSARGRSRVMPYGMDAFMLG 180
>FB|FBgn0039797 [details] [associations]
symbol:CG1340 species:7227 "Drosophila melanogaster"
[GO:0006413 "translational initiation" evidence=ISS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AE014297 GO:GO:0005829 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0003743 GeneTree:ENSGT00530000063406
HSSP:P33240 FlyBase:FBgn0039797 EMBL:BT003308 RefSeq:NP_651820.1
UniGene:Dm.11867 SMR:Q9VA45 MINT:MINT-1742166 STRING:Q9VA45
EnsemblMetazoa:FBtr0085699 GeneID:43645 KEGG:dme:Dmel_CG1340
UCSC:CG1340-RA InParanoid:Q9VA45 OMA:EFKGYGY GenomeRNAi:43645
NextBio:835038 Uniprot:Q9VA45
Length = 459
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 52/197 (26%), Positives = 85/197 (43%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL + + D+ K+FSD ++ ++R ++ET EF+GY +V+F L AL +
Sbjct: 66 YVGNLPKGLVQGDVMKIFSDFEVKNVRLIKDRETDEFKGYGYVEFETLAQLKSALNCN-- 123
Query: 127 VVRGRPVKI-SCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGAVTSNVA 185
GR +K+ + + P + I R P A S V + G ++ G V +
Sbjct: 124 ---GR-IKLDNFSAPLRIDIADHRRQNPG---APSGVGGAPPAGVGHE--RGGGVGRGGS 174
Query: 186 ANAGSGTSDVTEHI----DLSAVSGKIRRRTCYECGEKGHLSSACLKKTADQTMVTGKVS 241
A +G + + D S S + RRR E SS + T T ++
Sbjct: 175 TGAANGNNPYYQRRNYRRDDSVGSHQFRRR------EPRSNSSNHQMSNSSPTQSTTSIN 228
Query: 242 DNAGSRTGNFADNAGLG 258
N +R G F +G
Sbjct: 229 YNRTTR-GGFNSRVAVG 244
>TAIR|locus:2013016 [details] [associations]
symbol:CSTF64 "cleavage stimulating factor 64"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0031123 "RNA 3'-end
processing" evidence=IMP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048589
"developmental growth" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0045892 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048589 EMBL:AC012654 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GO:GO:0031123 HSSP:P33240 UniGene:At.12026 EMBL:AK229116
IPI:IPI00522487 PIR:E96740 RefSeq:NP_177325.2 UniGene:At.22646
SMR:Q9M9G6 IntAct:Q9M9G6 STRING:Q9M9G6 EnsemblPlants:AT1G71800.1
GeneID:843510 KEGG:ath:AT1G71800 TAIR:At1g71800 InParanoid:Q9M9G6
OMA:NADRNRE ProtClustDB:CLSN2714792 Genevestigator:Q9M9G6
Uniprot:Q9M9G6
Length = 461
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 34/129 (26%), Positives = 66/129 (51%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDS-LSLSMALKL 123
+++GN+ +D TEE L+++ + + S R T++ETG+ +GY ++ D +LS L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 124 DQEVVRGRPVKISCAVPPKKGINSKSRSLPS-NKRATSKVTDSAG-LGTSNDADNSGAVT 181
+ GR +++ A K ++ +S +T+ VT+S +G D++ V
Sbjct: 71 QSYEINGRQLRVDFAENDKGTDKTRDQSQGGPGLPSTTTVTESQKQIGGPVDSNMHQPVG 130
Query: 182 SNVAANAGS 190
++A A S
Sbjct: 131 LHLATTAAS 139
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 111 (44.1 bits), Expect = 0.00015, P = 0.00015
Identities = 25/77 (32%), Positives = 38/77 (49%)
Query: 63 YNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL 121
Y +IY+G L W+ E L+ F I + ++ETG GY V F D+ S + A
Sbjct: 51 YTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTFRDAESATRAC 110
Query: 122 KLDQEVVRGRPVKISCA 138
+ + V+ GR K + A
Sbjct: 111 QNPKPVIDGREAKCNLA 127
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
Identities = 42/180 (23%), Positives = 78/180 (43%)
Query: 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVE 61
T P TG+ RG A I F A+ + A D ++ K+ P KA KA+
Sbjct: 89 TDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSK--KVDPKKA-KAR----------- 134
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
+ +I++G L+ +I++E++K F I + +K+ + +G+ + F ++
Sbjct: 135 -HGKIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDL 193
Query: 121 LKLDQEVVRGRPVKISCAVP-PKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGA 179
LK ++ + G+ V + A P P+ + R P + G +N D G+
Sbjct: 194 LKTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGS 253
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 40/158 (25%), Positives = 66/158 (41%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG + F +V + LA E+D I P K +R PK+V
Sbjct: 53 MRDPTTKRSRGFGFVTFADAASVDKVLAQPHHELDSK--TIDP-KVAFPRRAQ---PKMV 106
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G LS + ED+K+ F K+ +K T RG+ V F + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 120 ALKLDQEVVRGRPVKISCAVPPK----KGINSKSRSLP 153
++ + + V+ A P + G ++R LP
Sbjct: 167 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLP 204
>UNIPROTKB|F8VX11 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:3285 EMBL:AC068888 IPI:IPI01021182
ProteinModelPortal:F8VX11 SMR:F8VX11 Ensembl:ENST00000549481
ArrayExpress:F8VX11 Bgee:F8VX11 Uniprot:F8VX11
Length = 360
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGE-FRGYAHVDFSDSLSLSMALKLDQ 125
++GNL +D+TEE +K+ F IS++R E +G+ + +F D SL AL L++
Sbjct: 99 FLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE 158
Query: 126 EVVRGRPVKISCA 138
E + R +++ A
Sbjct: 159 ESLGNRRIRVDVA 171
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 44/170 (25%), Positives = 68/170 (40%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG + F + V + LA E+D I P K +R PK+V
Sbjct: 52 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSK--TIDP-KVAFPRRAQ---PKMV 105
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G LS + T ED+K F K+ +K T RG+ V F +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 120 ALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLG 169
++ + + V+ A P K + S + S R D+ LG
Sbjct: 166 VCEIHFHEINNKMVECKKAQP--KEVMSPTGSARGRSRVMPYGMDAFMLG 213
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 44/170 (25%), Positives = 68/170 (40%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG + F + V + LA E+D I P K +R PK+V
Sbjct: 52 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSK--TIDP-KVAFPRRAQ---PKMV 105
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G LS + T ED+K F K+ +K T RG+ V F +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 120 ALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLG 169
++ + + V+ A P K + S + S R D+ LG
Sbjct: 166 VCEIHFHEINNKMVECKKAQP--KEVMSPTGSARGRSRVMPYGMDAFMLG 213
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
Identities = 44/170 (25%), Positives = 68/170 (40%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG + F + V + LA E+D I P K +R PK+V
Sbjct: 52 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSK--TIDP-KVAFPRRAQ---PKMV 105
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G LS + T ED+K F K+ +K T RG+ V F +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 120 ALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLG 169
++ + + V+ A P K + S + S R D+ LG
Sbjct: 166 VCEIHFHEINNKMVECKKAQP--KEVMSPTGSARGRSRVMPYGMDAFMLG 213
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
+Y+GNL W I E L+++ S+ ++ R K TG RGY ++ D + L+
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFMTGLN 64
Query: 125 QEVVRGRPVKIS 136
+ V GR + +S
Sbjct: 65 GKEVEGRQLVVS 76
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
+Y+GNL W I E L+++ S+ ++ R K TG RGY ++ D + L+
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDEDAEKFMTGLN 64
Query: 125 QEVVRGRPVKIS 136
+ V GR + +S
Sbjct: 65 GKEVEGRQLVVS 76
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 118 (46.6 bits), Expect = 0.00017, P = 0.00017
Identities = 41/141 (29%), Positives = 59/141 (41%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG I F +V + L E+DG KI P K KRT K+V
Sbjct: 77 MRDPATKRARGFGFITFVDPSSVDKVLNNREHELDGK--KIDP-KVAFPKRTQ---AKLV 130
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+++IG LS T ED+K+ F K+ +K T RG+ V F
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK 190
Query: 120 ALKLDQEVVRGRPVKISCAVP 140
++ + G+ V+ A P
Sbjct: 191 VCEIHFHEINGKMVECKKAQP 211
>UNIPROTKB|F1MYS7 [details] [associations]
symbol:EIF4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 OMA:YAEFDDV EMBL:DAAA02012872
EMBL:DAAA02012873 IPI:IPI00700182 UniGene:Bt.77209
Ensembl:ENSBTAT00000009044 Uniprot:F1MYS7
Length = 610
Score = 120 (47.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 28/100 (28%), Positives = 52/100 (52%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGE-FRGYAHVDFSDSLSLSMALKLDQ 125
++GNL +D+TE+ +K+ F IS++R E +G+ + +F D SL AL L++
Sbjct: 99 FLGNLPYDVTEDSIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE 158
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDS 165
E + R +++ A + + RS ++ S TD+
Sbjct: 159 ESLGNRRIRVDVA-DQAQDKDRDDRSFGRDRNRDSDKTDT 197
Score = 43 (20.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 259 TTNVSDNAGLSAVSGKIRRRTCYECGEKGHLSSACPKKTADQTNSTT 305
T + S G SA SG+ RR E EK L + P K D + T+
Sbjct: 420 TGSESSQTGTSATSGRNARRR--E-SEKS-LENETPNKEEDCQSPTS 462
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 44/170 (25%), Positives = 70/170 (41%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG + F + V + LA E+D I P K +R PK+V
Sbjct: 52 MRDPVTKRSRGFGFVTFVDQAGVDKVLAQTRHELDSK--TIDP-KVAFPRRAQ---PKLV 105
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G LS + T ED+K+ F K+ +K T RG+ V F + +
Sbjct: 106 TRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEK 165
Query: 120 ALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLG 169
++ + + V+ A P K + S + S R D+ LG
Sbjct: 166 VCEIHFHEINNKMVECKKAQP--KEVMSPTGSSRGRARVMPYGMDAFMLG 213
>FB|FBgn0005648 [details] [associations]
symbol:Pabp2 "Pabp2" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS;IDA] [GO:0006378
"mRNA polyadenylation" evidence=ISS;IMP;IDA] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:AE013599
GO:GO:0005737 GO:GO:0022008 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
eggNOG:NOG238057 GO:GO:0000289 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 EMBL:L23873 EMBL:L34934 EMBL:AF116341
EMBL:AY070631 EMBL:AY075519 RefSeq:NP_476902.1 RefSeq:NP_724648.1
UniGene:Dm.521 ProteinModelPortal:Q7KNF2 SMR:Q7KNF2 IntAct:Q7KNF2
STRING:Q7KNF2 PaxDb:Q7KNF2 PRIDE:Q7KNF2 EnsemblMetazoa:FBtr0088785
EnsemblMetazoa:FBtr0088786 GeneID:35788 KEGG:dme:Dmel_CG2163
CTD:35788 FlyBase:FBgn0005648 InParanoid:Q7KNF2 OMA:GRANYYA
OrthoDB:EOG4V9S6S PhylomeDB:Q7KNF2 ChiTaRS:PABP2 GenomeRNAi:35788
NextBio:795217 Bgee:Q7KNF2 GermOnline:CG2163 Uniprot:Q7KNF2
Length = 224
Score = 114 (45.2 bits), Expect = 0.00020, P = 0.00020
Identities = 22/86 (25%), Positives = 48/86 (55%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
+Y+GN+ + + E+L+ F C I+ + NK G +G+A+++F + AL ++
Sbjct: 98 VYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMN 157
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSR 150
+ + RGR +K+ + G+++ +R
Sbjct: 158 ETLFRGRQIKVMSKRTNRPGLSTTNR 183
>UNIPROTKB|Q28ZX3 [details] [associations]
symbol:Pabp2 "Polyadenylate-binding protein 2"
species:46245 "Drosophila pseudoobscura pseudoobscura" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0042802 "identical protein binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 GO:GO:0042802 EMBL:CM000071 GenomeReviews:CM000071_GR
eggNOG:NOG238057 GO:GO:0008143 KO:K14396 OMA:GRANYYA
OrthoDB:EOG4V9S6S RefSeq:XP_001360914.1 ProteinModelPortal:Q28ZX3
SMR:Q28ZX3 GeneID:4804339 KEGG:dpo:Dpse_GA15278 FlyBase:FBgn0075302
InParanoid:Q28ZX3 Uniprot:Q28ZX3
Length = 225
Score = 114 (45.2 bits), Expect = 0.00020, P = 0.00020
Identities = 22/86 (25%), Positives = 48/86 (55%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
+Y+GN+ + + E+L+ F C I+ + NK G +G+A+++F + AL ++
Sbjct: 98 VYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMN 157
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSR 150
+ + RGR +K+ + G+++ +R
Sbjct: 158 ETLFRGRQIKVMSKRTNRPGLSTTNR 183
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 97 (39.2 bits), Expect = 0.00021, P = 0.00021
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-L 123
+Y+G+L D+TE L + FS I S+R + T GYA+V+F AL +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 124 DQEVVRGRPVKI 135
+ +V++G+PV+I
Sbjct: 73 NFDVIKGKPVRI 84
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 97 (39.2 bits), Expect = 0.00021, P = 0.00021
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-L 123
+Y+G+L D+TE L + FS I S+R + T GYA+V+F AL +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 124 DQEVVRGRPVKI 135
+ +V++G+PV+I
Sbjct: 73 NFDVIKGKPVRI 84
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 97 (39.2 bits), Expect = 0.00021, P = 0.00021
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 63 YNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL 121
+ +I++G L + T+ L+K F I T+++TG+ RGY V +D + A
Sbjct: 10 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERAC 69
Query: 122 KLDQEVVRGRPVKISCAVPPKKGINSKSRSL 152
K ++ GR ++ A + +K RSL
Sbjct: 70 KDPNPIIDGRKANVNLAY-----LGAKPRSL 95
>SGD|S000001440 [details] [associations]
symbol:SGN1 "Cytoplasmic RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0016071 "mRNA metabolic process" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001440 GO:GO:0005737 GO:GO:0016071
GO:GO:0000166 EMBL:BK006942 Gene3D:3.30.70.330 EMBL:X79743
EMBL:Z38062 eggNOG:COG0724 GO:GO:0008143 KO:K14396
GeneTree:ENSGT00390000001517 OrthoDB:EOG44N22T PIR:S48435
RefSeq:NP_012266.1 ProteinModelPortal:P40561 SMR:P40561
DIP:DIP-6566N IntAct:P40561 MINT:MINT-388965 STRING:P40561
PaxDb:P40561 PeptideAtlas:P40561 EnsemblFungi:YIR001C GeneID:854817
KEGG:sce:YIR001C CYGD:YIR001c OMA:TASPPEN NextBio:977657
Genevestigator:P40561 GermOnline:YIR001C Uniprot:P40561
Length = 250
Score = 115 (45.5 bits), Expect = 0.00021, P = 0.00021
Identities = 29/115 (25%), Positives = 59/115 (51%)
Query: 24 KRALALDGSEMDG-LFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKK 82
K+ L LD E+ G L ++ P + K + ++ I++GN++ D+T E ++
Sbjct: 25 KQELELD--ELVGKLSIEGTPQVSQKLSKEEKHAHQLEADSRSIFVGNITPDVTPEQIED 82
Query: 83 LFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKIS 136
F DC +I + ++ TG +GY +++F AL+L+ ++G+ + +S
Sbjct: 83 HFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVS 137
>POMBASE|SPBC1D7.04 [details] [associations]
symbol:mlo3 "RNA binding protein Mlo3" species:4896
"Schizosaccharomyces pombe" [GO:0000346 "transcription export
complex" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IGI;IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPBC1D7.04
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR GO:GO:0003723 eggNOG:COG0724
GO:GO:0016973 GO:GO:0000346 EMBL:L42551 PIR:T39861
RefSeq:NP_595715.1 ProteinModelPortal:Q09330 STRING:Q09330
EnsemblFungi:SPBC1D7.04.1 GeneID:2540565 KEGG:spo:SPBC1D7.04
HOGENOM:HOG000177542 KO:K12881 OMA:KGIATII OrthoDB:EOG4QNR5V
NextBio:20801691 Uniprot:Q09330
Length = 199
Score = 112 (44.5 bits), Expect = 0.00022, P = 0.00022
Identities = 40/130 (30%), Positives = 64/130 (49%)
Query: 40 KIQPYKATK-AKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLF----SDCKISSLRF 94
K +P K K A T+ ++ ++I + NL D+TE +K+LF CK SL +
Sbjct: 30 KPKPTKNAKPAVNTASALKSVISEESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAY 89
Query: 95 GTNKETGEFRGYAHVDFSDSLSLSMALK-LDQEVVRG-RPVKISCAVPPKKGINS-KSRS 151
G N G +G A + FS + A + + +V G R +K+ + P + +NS +R
Sbjct: 90 GPN---GRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEIILDPSRQLNSLAARV 146
Query: 152 LP-SNKRATS 160
P SN AT+
Sbjct: 147 SPASNASATA 156
>UNIPROTKB|P23588 [details] [associations]
symbol:EIF4B "Eukaryotic translation initiation factor 4B"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=TAS]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 Reactome:REACT_111102 GO:GO:0008286
GO:GO:0000166 GO:GO:0006446 GO:GO:0016281 Gene3D:3.30.70.330
EMBL:CH471054 GO:GO:0003743 GO:GO:0000289 Reactome:REACT_1762
EMBL:X55733 EMBL:AB076839 EMBL:CR456958 EMBL:AK222528 EMBL:BC073139
EMBL:BC073154 EMBL:BC098437 IPI:IPI00012079 PIR:S12566
RefSeq:NP_001408.2 UniGene:Hs.648394 UniGene:Hs.702041 PDB:1WI8
PDB:2J76 PDBsum:1WI8 PDBsum:2J76 ProteinModelPortal:P23588
SMR:P23588 IntAct:P23588 MINT:MINT-210187 STRING:P23588
PhosphoSite:P23588 DMDM:205371761 PaxDb:P23588 PRIDE:P23588
Ensembl:ENST00000262056 GeneID:1975 KEGG:hsa:1975 UCSC:uc001sbh.4
CTD:1975 GeneCards:GC12P053400 HGNC:HGNC:3285 HPA:CAB019440
MIM:603928 neXtProt:NX_P23588 PharmGKB:PA27713 eggNOG:NOG238591
HOGENOM:HOG000006553 HOVERGEN:HBG006129 InParanoid:P23588 KO:K03258
PhylomeDB:P23588 EvolutionaryTrace:P23588 GenomeRNAi:1975
NextBio:7995 PMAP-CutDB:P23588 ArrayExpress:P23588 Bgee:P23588
CleanEx:HS_EIF4B Genevestigator:P23588 GermOnline:ENSG00000063046
Uniprot:P23588
Length = 611
Score = 123 (48.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 29/100 (29%), Positives = 52/100 (52%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGE-FRGYAHVDFSDSLSLSMALKLDQ 125
++GNL +D+TEE +K+ F IS++R E +G+ + +F D SL AL L++
Sbjct: 99 FLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE 158
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDS 165
E + R +++ A + + RS ++ S TD+
Sbjct: 159 ESLGNRRIRVDVA-DQAQDKDRDDRSFGRDRNRDSDKTDT 197
Score = 39 (18.8 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 246 SRTGNFADNAGLGTTNVSDNAGLSAVSGKIRRRTCYECGEKGHLSSACPKKTADQ 300
SRTG+ + G TT+ S NA + T + E H ++ P K DQ
Sbjct: 418 SRTGSESSQTGTSTTS-SRNARRRESEKSLENETLNK-EEDCHSPTSKPPKP-DQ 469
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 111 (44.1 bits), Expect = 0.00023, P = 0.00023
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
G R+Y+G+L ++ITE+ L+ +F KI ++ + +TG +GY + FSDS A
Sbjct: 11 GPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRA 70
Query: 121 LK-LDQEVVRGRPVKI 135
L+ L+ + GRP+++
Sbjct: 71 LEQLNGFELAGRPMRV 86
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 120 (47.3 bits), Expect = 0.00024, P = 0.00024
Identities = 34/140 (24%), Positives = 70/140 (50%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGSEM-DGLFLKI-QPYKATKAKRTSDFTPKIVEGY 63
T K +G A + + A + AL S M G +K+ +P +A+ D + +
Sbjct: 130 TLKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAF 189
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
NRIY+ ++ D++++D+K +F +I S + TG+ +GY +++ + S A+
Sbjct: 190 NRIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVS 249
Query: 123 -LDQEVVRGRPVKISCAVPP 141
++ + G+ +++ AV P
Sbjct: 250 SMNLFDLGGQYLRVGKAVTP 269
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 118 (46.6 bits), Expect = 0.00024, P = 0.00024
Identities = 47/143 (32%), Positives = 68/143 (47%)
Query: 11 GIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK---AKRTSDFT-PKIVEGYNRI 66
G ++F + A +AL+L+G+ M + AT A R+ D P+ Y+ I
Sbjct: 108 GYCFVDFASPAAAAKALSLNGTPMPNTNRLFKLNWATGGGLADRSRDDRGPE----YS-I 162
Query: 67 YIGNLSWDITEEDLKKLFSD----CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
++G+L ++ E L LF CK S + T+ +G RGY V FSD AL
Sbjct: 163 FVGDLGPEVNEYVLVSLFQSRFPSCK--SAKIMTDPISGMSRGYGFVRFSDENDQQRALS 220
Query: 123 LDQEVVRG-RPVKISCAVPPKKG 144
Q V G RP++IS A P KG
Sbjct: 221 EMQGVYCGNRPMRISTATPKNKG 243
>MGI|MGI:2685954 [details] [associations]
symbol:Pabpn1l "poly(A)binding protein nuclear 1-like"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISA] [GO:0008143 "poly(A) RNA binding" evidence=ISA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2685954 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 CTD:390748 OMA:RCGEVHR
EMBL:BC141316 EMBL:BC141317 EMBL:BG080308 EMBL:BG067238
EMBL:CA556976 EMBL:BM225984 EMBL:C85607 EMBL:C85611 EMBL:C86787
EMBL:BK001615 IPI:IPI00381169 RefSeq:NP_001007463.1
UniGene:Mm.25449 ProteinModelPortal:Q5XFR0 SMR:Q5XFR0
PhosphoSite:Q5XFR0 PRIDE:Q5XFR0 Ensembl:ENSMUST00000093059
GeneID:382035 KEGG:mmu:382035 UCSC:uc009ntk.1 eggNOG:NOG288813
GeneTree:ENSGT00390000001517 InParanoid:Q5XFR0 OrthoDB:EOG4N04GD
NextBio:402874 Bgee:Q5XFR0 CleanEx:MM_PABPNL1 Genevestigator:Q5XFR0
GermOnline:ENSMUSG00000069867 Uniprot:Q5XFR0
Length = 273
Score = 115 (45.5 bits), Expect = 0.00026, P = 0.00026
Identities = 28/93 (30%), Positives = 52/93 (55%)
Query: 60 VEGYNR-IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
VE +R +++GN+ + + +L+ FS C +I + +K +G +GYA+++F+ S+
Sbjct: 138 VEADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSV 197
Query: 118 SMALKLDQEVVRGRPVKISCAVPPKKGINSKSR 150
A+ LD+ RGR +K+ GI+S R
Sbjct: 198 KAAVGLDESTFRGRVIKVLPKRTNFPGISSTDR 230
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 96 (38.9 bits), Expect = 0.00027, P = 0.00027
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-L 123
+Y+G+L D+TE L + FS + S+R + T GYA+V+F AL +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 124 DQEVVRGRPVKI 135
+ +V++G+P++I
Sbjct: 73 NFDVIKGKPIRI 84
>UNIPROTKB|E2RKS4 [details] [associations]
symbol:EIF4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063406 OMA:YAEFDDV EMBL:AAEX03015001
EMBL:AAEX03015000 ProteinModelPortal:E2RKS4
Ensembl:ENSCAFT00000011414 Uniprot:E2RKS4
Length = 612
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 28/100 (28%), Positives = 52/100 (52%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGE-FRGYAHVDFSDSLSLSMALKLDQ 125
++GNL +D+TE+ +K+ F IS++R E +G+ + +F D SL AL L++
Sbjct: 99 FLGNLPYDVTEDSIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNE 158
Query: 126 EVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDS 165
E + R +++ A + + RS ++ S TD+
Sbjct: 159 ESLGNRRIRVDVA-DQAQDKDRDDRSFGRDRNRDSDKTDT 197
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 121 (47.7 bits), Expect = 0.00028, P = 0.00028
Identities = 36/127 (28%), Positives = 63/127 (49%)
Query: 43 PYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETG 101
P K K K+ K+ + R+ I NLS+ +E+DLK +F+ + + K G
Sbjct: 98 PKKEPKHKKA-----KVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNI-PKKPDG 151
Query: 102 EFRGYAHVDFSDSLSLSMALK-LDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATS 160
+ RG+A V F + L ALK + + ++GR V + AV K +++ S P K+++
Sbjct: 152 KMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHASAPGVKKSSD 211
Query: 161 KVTDSAG 167
+ +G
Sbjct: 212 RKPKESG 218
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 39/158 (24%), Positives = 65/158 (41%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG + F +V + L E+D I P K +R PK+V
Sbjct: 31 MRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSK--TIDP-KVAFPRRAQ---PKMV 84
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G LS + ED+K+ F K+ +K T RG+ V F + +
Sbjct: 85 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 144
Query: 120 ALKLDQEVVRGRPVKISCAVPPK----KGINSKSRSLP 153
++ + + V+ A P + G ++R LP
Sbjct: 145 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLP 182
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 119 (46.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 52/222 (23%), Positives = 99/222 (44%)
Query: 7 GKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKI-QPYKATKA----KRTSDFTPKIVE 61
G G ++ +E VK+AL + M G ++++ + +A A K T+ + + +
Sbjct: 329 GNKTGYVFVDLSSEEEVKKALKCNRDYMGGRYIEVFREKQAPTARGPPKSTTPWQGRTL- 387
Query: 62 GYN----------RIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVD 110
G N R+++ NLS+ +EEDL+KLFS +S L + + T + +G+A V
Sbjct: 388 GENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVT 447
Query: 111 FS-DSLSLSMALKLDQEVVRGRPVKISCAVPPKKG---INSKSRSLPSNKRATSKVTDSA 166
F ++ ++D +V +GR + + + K+ N+ S K A K S+
Sbjct: 448 FMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQEANAPGSSYKKKKEAMDKANSSS 507
Query: 167 GLGTSNDADNSGAVTSNVAANAGSGTSDVTEHIDLSAVSGKI 208
+ AV +A + S V +H +V+ ++
Sbjct: 508 SHNWNTLFMGPNAVADAIAQKYNATKSQVFDHETRGSVAVRV 549
Score = 47 (21.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRAL 27
+ F GKFR I F++E + AL
Sbjct: 33 LKFTKDGKFRKFGFIGFKSEEEAQAAL 59
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 116 (45.9 bits), Expect = 0.00029, P = 0.00029
Identities = 39/158 (24%), Positives = 65/158 (41%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG + F +V + L E+D I P K +R PK+V
Sbjct: 53 MRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSK--TIDP-KVAFPRRAQ---PKMV 106
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G LS + ED+K+ F K+ +K T RG+ V F + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 120 ALKLDQEVVRGRPVKISCAVPPK----KGINSKSRSLP 153
++ + + V+ A P + G ++R LP
Sbjct: 167 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLP 204
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 116 (45.9 bits), Expect = 0.00031, P = 0.00031
Identities = 25/95 (26%), Positives = 56/95 (58%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-L 123
+++GN+S+D++E+ ++ +FS + S++ ++ETG+ +GY ++F D + +A++ L
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 124 DQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRA 158
+ + GR +++ A G+N + SN A
Sbjct: 80 NGYELSGRILRVDSAAG---GMNMEEFGSSSNAPA 111
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 114 (45.2 bits), Expect = 0.00032, P = 0.00032
Identities = 47/194 (24%), Positives = 79/194 (40%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P+T + RG + + T V A+ ++DG ++P +A R P
Sbjct: 46 MRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV--VEPKRAVS--REDSQRPGAH 101
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G + D E L+ F KI + T++ +G+ RG+A V F D S+
Sbjct: 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDK 161
Query: 120 ALKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRATSKVTDSAGLGTSNDADNSGA 179
+ V G ++ A+ K+ + S S S + + G G + DN G
Sbjct: 162 IVIQKYHTVNGHNCEVRKALS-KQEMASASSS-QRGRSGSGNFGGGRGGGFGGN-DNFGR 218
Query: 180 VTSNVAANAGSGTS 193
N + G G S
Sbjct: 219 -GGNFSGRGGFGGS 231
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 116 (45.9 bits), Expect = 0.00032, P = 0.00032
Identities = 39/158 (24%), Positives = 65/158 (41%)
Query: 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
M P T + RG + F +V + L E+D I P K +R PK+V
Sbjct: 53 MRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSK--TIDP-KVAFPRRAQ---PKMV 106
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
+I++G LS + ED+K+ F K+ +K T RG+ V F + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 120 ALKLDQEVVRGRPVKISCAVPPK----KGINSKSRSLP 153
++ + + V+ A P + G ++R LP
Sbjct: 167 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLP 204
>UNIPROTKB|F8WD15 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005082 EMBL:AC021876 EMBL:AC079780 HGNC:HGNC:28868
ChiTaRS:Igf2bp3 IPI:IPI00953668 ProteinModelPortal:F8WD15
SMR:F8WD15 Ensembl:ENST00000421467 ArrayExpress:F8WD15 Bgee:F8WD15
Uniprot:F8WD15
Length = 81
Score = 95 (38.5 bits), Expect = 0.00035, P = 0.00035
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 64 NRIYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEF---RGYAHVDFSD-SLSLSM 119
N++YIGNLS + DL+ +F D KI +G F GYA VD D S +L
Sbjct: 2 NKLYIGNLSENAAPSDLESIFKDAKIPV--------SGPFLVKTGYAFVDCPDESWALKA 53
Query: 120 ALKLDQEV-VRGRPVKISCAVPPKK 143
L ++ + G+P+++ +VP ++
Sbjct: 54 IEALSGKIELHGKPIEVEHSVPKRQ 78
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 95 (38.5 bits), Expect = 0.00035, P = 0.00035
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
++IY+GNL + + E DL + FS I S++ N TG +GYA V + AL
Sbjct: 44 DQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALD 103
Query: 123 LDQEVVRGRPVKISCA 138
+ ++GR + + A
Sbjct: 104 AHGKDLQGRSLVVRIA 119
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 95 (38.5 bits), Expect = 0.00035, P = 0.00035
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
++IY+GNL + + E DL + FS I S++ N TG +GYA V + AL
Sbjct: 44 DQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAVKALD 103
Query: 123 LDQEVVRGRPVKISCA 138
+ ++GR + + A
Sbjct: 104 AHGKDLQGRSLVVRIA 119
>ZFIN|ZDB-GENE-050306-51 [details] [associations]
symbol:rbm8a "RNA binding motif protein 8A"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0051028
"mRNA transport" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050306-51 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0051028
eggNOG:COG0724 GeneTree:ENSGT00550000074641 CTD:9939
HOGENOM:HOG000183826 KO:K12876 OMA:WILFVTS OrthoDB:EOG42822W
EMBL:BC090261 IPI:IPI00505312 RefSeq:NP_001013363.1
UniGene:Dr.76821 HSSP:Q9Y5S9 ProteinModelPortal:Q5D018 SMR:Q5D018
STRING:Q5D018 PRIDE:Q5D018 Ensembl:ENSDART00000018253 GeneID:503767
KEGG:dre:503767 InParanoid:Q5D018 NextBio:20866311 Bgee:Q5D018
Uniprot:Q5D018
Length = 174
Score = 108 (43.1 bits), Expect = 0.00035, P = 0.00035
Identities = 40/147 (27%), Positives = 73/147 (49%)
Query: 20 EGAVKRALALDGSEMDGLFLKI-QPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEE 78
E A KR GSE +G ++ + Y + + VEG+ +++ + + TEE
Sbjct: 30 EKAKKRKGRGFGSE-EGARSRVREDYDTVEQDGDEPGPQRSVEGWI-LFVTGVHEEATEE 87
Query: 79 DLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LDQEVVRGRPVKIS 136
D+ F++ +I +L ++ TG +GYA V++ A++ L+ + + G+P+ +
Sbjct: 88 DVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGQELMGQPISVD 147
Query: 137 -CAV--PPK---KGINSKSRSLPSNKR 157
C V PPK +G +SRS P +R
Sbjct: 148 WCFVRGPPKSKRRGGRRRSRS-PDRRR 173
WARNING: HSPs involving 73 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.312 0.128 0.363 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 311 311 0.00080 116 3 11 23 0.46 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 323
No. of states in DFA: 593 (63 KB)
Total size of DFA: 187 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 29.29u 0.08s 29.37t Elapsed: 00:00:03
Total cpu time: 29.33u 0.08s 29.41t Elapsed: 00:00:04
Start: Thu May 9 21:29:43 2013 End: Thu May 9 21:29:47 2013
WARNINGS ISSUED: 2