BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021488
(311 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 80/147 (54%), Gaps = 15/147 (10%)
Query: 6 TGKFRGIAIINFRTEGAVKRALALDGS-EMDGLFLKI----------QPYKATKAKRTSD 54
+G+ +G ++F T A K A+A +G+ E+DG + + QPY +R +
Sbjct: 300 SGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQ---QRAGN 356
Query: 55 FTPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSD 113
F ++ E + +++GNLS++ TE+DL F C I S+R T+ ++G +G+ +V FSD
Sbjct: 357 FGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSD 416
Query: 114 SLSLSMALKLDQEVVRGRPVKISCAVP 140
S ++++ + GRP ++ + P
Sbjct: 417 IDSAKKCVEMNGHFIAGRPCRLDFSTP 443
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDF 111
+++G LSW++ ++ L + F + I R + ++G +GY +VDF
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDF 311
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 5 DTGKFRGIAIINFRT-EGAVKRALALDGSEMDGLFL---KIQPYKATKAKRTSDFTPKIV 60
+T + RG + T E A K L+G +MDG L K P + + DF P
Sbjct: 91 ETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSC- 149
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
R+Y+GNL WD+ L++LFS+ K+ S R +++ETG RG+ V S ++
Sbjct: 150 ----RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVND 205
Query: 120 AL-KLDQEVVRGRPVKISCA 138
A+ LD + + GR V+++ A
Sbjct: 206 AIAALDGQTLDGRAVRVNVA 225
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 76/148 (51%), Gaps = 13/148 (8%)
Query: 5 DTGKFRGIAIINF----RTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIV 60
+T + RG + E AV++ + +++G L + KA + P++
Sbjct: 186 ETDQSRGFGFVTMSSVDEAETAVEK---FNRYDLNGRLLTVN--KAAPRGSRPERAPRVY 240
Query: 61 EGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSM 119
E R+Y+GNL WD+ L++LFS+ K+ R ++ETG RG+ V SD L+
Sbjct: 241 EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNE 300
Query: 120 ALK-LDQEVVRGRPVKISCAV--PPKKG 144
A+ LD + + GR ++++ A PP++G
Sbjct: 301 AISALDGQNLEGRAIRVNVAEERPPRRG 328
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 65 RIYIGNLSWDITEEDLKKLFSD---CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL 121
++++GNL++D+ + L LF +I+ + + N+ET + RG+ V S A+
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIY--NRETDQSRGFGFVTMSSVDEAETAV 208
Query: 122 -KLDQEVVRGRPVKISCAVP 140
K ++ + GR + ++ A P
Sbjct: 209 EKFNRYDLNGRLLTVNKAAP 228
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 4/130 (3%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK--AKRTSDFTPKIVEGYNRIY 67
+GIA + F +V A+ L G + G+ + +Q +A K A ++ K G R+Y
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLY 253
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQ 125
+G+L ++ITE+ L+ +F +I S++ + ETG +GY + FSDS AL +L+
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 126 EVVRGRPVKI 135
+ GRP+K+
Sbjct: 314 FELAGRPMKV 323
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 4/130 (3%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK--AKRTSDFTPKIVEGYNRIY 67
+GIA + F +V A+ L G + G+ + +Q +A K A ++ K G R+Y
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLY 253
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQ 125
+G+L ++ITE+ L+ +F +I S++ + ETG +GY + FSDS AL +L+
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 126 EVVRGRPVKI 135
+ GRP+K+
Sbjct: 314 FELAGRPMKV 323
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 4/130 (3%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK--AKRTSDFTPKIVEGYNRIY 67
+GIA + F +V A+ L G + G+ + +Q +A K A ++ K G R+Y
Sbjct: 194 KGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLY 253
Query: 68 IGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQ 125
+G+L ++ITE+ L+ +F +I S++ + ETG +GY + FSDS AL +L+
Sbjct: 254 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Query: 126 EVVRGRPVKI 135
+ GRP+K+
Sbjct: 314 FELAGRPMKV 323
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
G +++GNL +++ +E +K+ F + ++ +RF T E G FRG+ HV+F+ + + A
Sbjct: 447 GSKTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTF-EDGNFRGFGHVEFATAEAAKKA 505
Query: 121 LKLDQEVVRGRPVKISCA 138
L+L + GRPV++ A
Sbjct: 506 LELAGHDLMGRPVRLDLA 523
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQ------PYKATKAKRTSDF 55
TF D G FRG + F T A K+AL L G ++ G +++ Y + S F
Sbjct: 482 TFED-GNFRGFGHVEFATAEAAKKALELAGHDLMGRPVRLDLARERGAYTPGSGRDNSSF 540
Query: 56 TPKIVEGYNRIYIGNL--SWDITE--EDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVD 110
N I+I S DI + L++ F C +I+ + + ETG +G A++D
Sbjct: 541 KKPAQSSGNTIFIKGFDTSLDIHQIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMD 600
Query: 111 FSDSLSLSMALKLD 124
F+D+ SLS A +L+
Sbjct: 601 FADNGSLSKAYELN 614
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 72/137 (52%), Gaps = 5/137 (3%)
Query: 5 DTGKFRGIAIINFRTEGAVKRALAL-DGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGY 63
DT + RG + T ++A+ + + +++G L + KA + + P+ E
Sbjct: 172 DTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVN--KAARRGERPERPPRTFEQS 229
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL- 121
RIY+GN+ W I + L++LFS+ K+ S R ++ETG RG+ V + +S A+
Sbjct: 230 YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIA 289
Query: 122 KLDQEVVRGRPVKISCA 138
LD + + GR ++++ A
Sbjct: 290 NLDGQSLDGRTIRVNVA 306
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 65 RIYIGNLSWDITEEDLKKLFSDCKISSL-RFGTNKETGEFRGYAHVDFS 112
++++GNL +D+ E L +LF + + N++T + RG+ V S
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMS 185
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K TG +G+A+++FSD S+ +L LD
Sbjct: 165 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALD 224
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLP 153
+ + RGR +K+ + GI++ R P
Sbjct: 225 ESLFRGRQIKVVPKRTNRPGISTTDRGFP 253
>sp|O14369|SCE3_SCHPO Probable RNA-binding protein sce3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sce3 PE=1 SV=1
Length = 388
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
++GNLS+D+TE DL F + ++S+R + T RG+ +V+F + +LS AL L E
Sbjct: 97 HVGNLSFDLTENDLGDFFGEG-VTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 127 VVRGRPVKISCAVP 140
+ GRPV+I+ A P
Sbjct: 156 DLMGRPVRITVAEP 169
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K TG +G+A+++FSD S+ +L LD
Sbjct: 164 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALD 223
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLP 153
+ + RGR +K+ + GI++ R P
Sbjct: 224 ESLFRGRQIKVVPKRTNRPGISTTDRGFP 252
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 5 DTGKFRGIAIINFRTEGAVKRALALDGS-EMDGLFLKIQPYKATKAKRTSDFTPKIVEGY 63
+T + RG + T +A+ L +++G L + KA + P+ +
Sbjct: 133 ETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVN--KAAPRGSRPERAPRTFQPT 190
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL- 121
RIY+GN+ WDI + L+++FS+ K+ S R ++E+G RG+ V S +S A+
Sbjct: 191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIA 250
Query: 122 KLDQEVVRGRPVKISCA 138
LD + + GR ++++ A
Sbjct: 251 NLDGQTLDGRTIRVNAA 267
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 27 LALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFSD 86
L LD E G F P +A T ++ + ++++GNL +DI E L +LF
Sbjct: 66 LVLDDQEQGGDF----PSFVGEAGETEEYQEPSEDA--KLFVGNLPYDIDSEGLAQLFQQ 119
Query: 87 CKISSL-RFGTNKETGEFRGYAHVDFSDSLSLSMALKL-DQEVVRGRPVKISCAVP 140
+ + N+ET RG+ V S A++L Q + GR + ++ A P
Sbjct: 120 AGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAP 175
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K +G +G+A+++FSD S+ +L LD
Sbjct: 170 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 229
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLPSNK 156
+ + RGR +K+ + GI++ R P ++
Sbjct: 230 ESLFRGRQIKVIPKRTNRPGISTTDRGFPRSR 261
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K +G +G+A+++FSD S+ +L LD
Sbjct: 174 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 233
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLP 153
+ + RGR +K+ + GI++ R P
Sbjct: 234 ESLFRGRQIKVIPKRTNRPGISTTDRGFP 262
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K +G +G+A+++FSD S+ +L LD
Sbjct: 174 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALD 233
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLP 153
+ + RGR +K+ + GI++ R P
Sbjct: 234 ESLFRGRQIKVIPKRTNRPGISTTDRGFP 262
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
IY+GN+ + T E+L+ F C ++ + +K TG +G+A+++F D S+ +L LD
Sbjct: 165 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALD 224
Query: 125 QEVVRGRPVKISCAVPPKKGINSKSRSLP 153
+ + RGR +K+ + GI++ R P
Sbjct: 225 ESLFRGRQIKVVPKRTNRPGISTTDRGFP 253
>sp|Q9FVQ1|NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1
Length = 557
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
G ++ NLS++I D++ F + ++ +RF TN++ G FRG+ HV+F+ S A
Sbjct: 295 GSKTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKA 354
Query: 121 LKLDQEVVRGRPVKISCA 138
L+ + GR +++ A
Sbjct: 355 LEFHGRPLLGREIRLDIA 372
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 16/132 (12%)
Query: 5 DTGKFRGIAIINFRTEGAVKRALALDGSEMDG--LFLKIQPYKATKAKRTSDFTPK---I 59
D G FRG + F + ++AL G + G + L I + + +R + FTP+
Sbjct: 333 DDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLDIAQERGERGERPA-FTPQSGNF 391
Query: 60 VEG-----YNRIYIGNLSWDITEEDLK----KLFSDC-KISSLRFGTNKETGEFRGYAHV 109
G +I++ ++E+D+K + FS C +I ++ +++TG +G A++
Sbjct: 392 RSGGDGGDEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYL 451
Query: 110 DFSDSLSLSMAL 121
+FS+ ++ L
Sbjct: 452 EFSEGKEKALEL 463
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-L 123
IY+GNLS+ +T++DL K+FS+ ++ ++ T++ETG RG+ V+ S + A++ L
Sbjct: 3 IYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQAL 62
Query: 124 DQEVVRGRPVKISCAVP-PKKGINSKSRSLPSN 155
D GR +K++ A P +KG S S N
Sbjct: 63 DGAEWMGRVLKVNKARPREEKGARSGGGSWSRN 95
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
+Y+GN+ + T +DL+ FS C I+ + +K +G +GYA+++F++ S+ A+ +D
Sbjct: 95 VYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMD 154
Query: 125 QEVVRGRPVKI 135
+ V RGR +K+
Sbjct: 155 ETVFRGRTIKV 165
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 78/154 (50%), Gaps = 16/154 (10%)
Query: 6 TGKFRGIAIINFRTEGAVKRA-LALDGSEMDGLFLKIQPYKATKAKRTSDF--------- 55
TG+ RG + ++ V+ A +G E+DG L++ + + S F
Sbjct: 124 TGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGG 183
Query: 56 --TPKIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFS 112
+ NR+Y+GNL+W + ++ L+ LFS+ K+ + ++++G RG+ V +S
Sbjct: 184 SRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYS 243
Query: 113 DSLSLSMALK-LDQEVVRGRPVKISCAV--PPKK 143
+ ++ A++ LD + GR +++S A PP++
Sbjct: 244 SAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRR 277
>sp|Q9JLI8|SART3_MOUSE Squamous cell carcinoma antigen recognized by T-cells 3 OS=Mus
musculus GN=Sart3 PE=2 SV=1
Length = 962
Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/177 (24%), Positives = 85/177 (48%), Gaps = 12/177 (6%)
Query: 3 FPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQP-YKATKAKRTSDFTPKIVE 61
F + G FRG + F E + ++AL LD ++G + + P +K F
Sbjct: 739 FSNRGDFRGYCYVEFGEEKSAQQALELDRKIVEGRPMFVSPCVDKSKNPDFKVFRYSTTL 798
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDCK----ISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
++++I L + T+E+L+ + CK + LR TN+ G+ +G A+V++ +
Sbjct: 799 EKHKLFISGLPFSCTKEELEDI---CKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQA 854
Query: 118 SMA-LKLDQEVVRGRPVKISCAVPPKKGINSKS--RSLPSNKRATSKVTDSAGLGTS 171
S A +K+D +R +K++ + PP++ + K R+ P ++ + G G +
Sbjct: 855 SQAVMKMDGMTIRENVIKVAISNPPQRKVPEKPEVRTAPGAPMLPRQMYGARGKGRT 911
Score = 52.0 bits (123), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 13/115 (11%)
Query: 42 QPYKATKAKRTSDFTPKIVEGYNR----IYIGNLSWDITEED--LKKLFSDC-KISSLR- 93
Q KA KR PK+ ++ +++ NL + I E + L+ LF C ++ +R
Sbjct: 681 QKEKAASLKRD---MPKVAHDSSKDSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRP 737
Query: 94 FGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPKKGINSK 148
+N+ G+FRGY +V+F + S AL+LD+++V GRP+ +S V K + K
Sbjct: 738 IFSNR--GDFRGYCYVEFGEEKSAQQALELDRKIVEGRPMFVSPCVDKSKNPDFK 790
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYN---RI 66
+GIA + F +V A+ L G + G+ + +Q +A K R + + +G R+
Sbjct: 207 KGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEK-NRLAAMANNLQKGNGGPMRL 265
Query: 67 YIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLD 124
Y+G+L ++ITE+ L+ +F KI ++ + +TG +GY + FSDS AL +L+
Sbjct: 266 YVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 325
Query: 125 QEVVRGRPVKI 135
+ GRP+++
Sbjct: 326 GFELAGRPMRV 336
>sp|P42696|RBM34_HUMAN RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2
Length = 430
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 71/131 (54%), Gaps = 17/131 (12%)
Query: 13 AIINFRTEGAVKRALALDGSEM-DGLFLKIQPYKAT--KAKRTSDFTPKIVEGYNRIYIG 69
A + F+ E A +AL +G+++ DG +++ T + KR+ +++G
Sbjct: 246 AYVVFKEESAATQALKRNGAQIADGFRIRVDLASETSSRDKRS-------------VFVG 292
Query: 70 NLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVV 128
NL + + E ++K F DC I ++R +K TG +G+ +V F ++ S+ +ALKL+ +
Sbjct: 293 NLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSEL 352
Query: 129 RGRPVKISCAV 139
GR +++ +V
Sbjct: 353 MGRKLRVMRSV 363
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 10/143 (6%)
Query: 6 TGKFRGIAIINFRTEGAVKRALAL-DGSEMDGLFLKIQPYKATKAKRTSDFTPKI----- 59
T + RG A + + K A+ L DGS++ G +K+ + + + KI
Sbjct: 151 TDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQ 210
Query: 60 --VEGYNRIYIGNLSWDITEEDLKKLFSDCK-ISSLRFGTNKETGEFRGYAHVDFSDSLS 116
V+ +++Y+ NLSW +T + L+ F+D S + ++ +G RG+ + FS + +
Sbjct: 211 GFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEA 270
Query: 117 LSMALKLDQEV-VRGRPVKISCA 138
++ AL EV + GRP++++ A
Sbjct: 271 MNSALDTMNEVELEGRPLRLNVA 293
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 65 RIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKL 123
R+Y+GNL + +T L ++F++ ++++ ++ T RG+A V A++L
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 124 -DQEVVRGRPVKISCAVPPKKG 144
D V GR VK++ P+ G
Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGG 196
>sp|Q15020|SART3_HUMAN Squamous cell carcinoma antigen recognized by T-cells 3 OS=Homo
sapiens GN=SART3 PE=1 SV=1
Length = 963
Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 3 FPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQP-YKATKAKRTSDFTPKIVE 61
F + G FRG + F+ E + +AL +D ++G + + P +K F
Sbjct: 739 FSNRGDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSL 798
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDCK----ISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
++++I L + T+E+L+++ CK + LR TN+ G+ +G A+V++ +
Sbjct: 799 EKHKLFISGLPFSCTKEELEEI---CKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQA 854
Query: 118 SMA-LKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRA 158
S A +K+D ++ +K++ + PP++ + K P ++A
Sbjct: 855 SQAVMKMDGMTIKENIIKVAISNPPQRKVPEK----PETRKA 892
Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 17/127 (13%)
Query: 42 QPYKATKAKRTSDFTPKIVEGYNR----IYIGNLSWDITEED--LKKLFSDC-KISSLR- 93
Q KA KR PK++ ++ +++ NL + + E D L+ LF C ++ +R
Sbjct: 681 QKEKAASLKRD---MPKVLHDSSKDSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRP 737
Query: 94 FGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPKKGINSK----S 149
+N+ G+FRGY +V+F + S AL++D++ V GRP+ +S V K + K S
Sbjct: 738 IFSNR--GDFRGYCYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYS 795
Query: 150 RSLPSNK 156
SL +K
Sbjct: 796 TSLEKHK 802
>sp|Q5REG1|SART3_PONAB Squamous cell carcinoma antigen recognized by T-cells 3 OS=Pongo
abelii GN=SART3 PE=2 SV=1
Length = 981
Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 3 FPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQP-YKATKAKRTSDFTPKIVE 61
F + G FRG + F+ E + +AL +D ++G + + P +K F
Sbjct: 757 FSNRGDFRGYRYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYSTSL 816
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDCK----ISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
++++I L + T+E+L+++ CK + LR TN+ G+ +G A+V++ +
Sbjct: 817 EKHKLFISGLPFSCTKEELEEI---CKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQA 872
Query: 118 SMA-LKLDQEVVRGRPVKISCAVPPKKGINSKSRSLPSNKRA 158
S A +K+D ++ +K++ + PP++ + K P ++A
Sbjct: 873 SQAVMKMDGMTIKENVIKVAISNPPQRKVPEK----PETRKA 910
Score = 49.7 bits (117), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 17/127 (13%)
Query: 42 QPYKATKAKRTSDFTPKIVEGYNR----IYIGNLSWDITEED--LKKLFSDC-KISSLR- 93
Q KA KR PK++ ++ +++ NL + + E D L+ LF C ++ +R
Sbjct: 699 QKEKAASLKRD---MPKVLHDSSKDSITVFVSNLPYSMQEPDAKLRPLFEACGEVVQIRP 755
Query: 94 FGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPKKGINSK----S 149
+N+ G+FRGY +V+F + S AL++D++ V GRP+ +S V K + K S
Sbjct: 756 IFSNR--GDFRGYRYVEFKEEKSALQALEMDRKSVEGRPMFVSPCVDKSKNPDFKVFRYS 813
Query: 150 RSLPSNK 156
SL +K
Sbjct: 814 TSLEKHK 820
>sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis
GN=Pabpn1l-a PE=1 SV=1
Length = 218
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
+Y+GN+ + T +DL+ FS C I+ + +K +G +GYA+++F++ S+ A+ +D
Sbjct: 95 VYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMD 154
Query: 125 QEVVRGRPVKI 135
+ V RGR +K+
Sbjct: 155 ETVFRGRTIKV 165
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 78/148 (52%), Gaps = 10/148 (6%)
Query: 6 TGKFRGIAIINFRTEGAVKRA-LALDGSEMDGLFLKIQ----PYK-ATKAKRTSDFTPKI 59
TG+ RG + ++ V+ A +G E+DG L++ P K + R
Sbjct: 124 TGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGS 183
Query: 60 VEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLS 118
+ NR+Y+GNL+W + ++ L+ LFS+ K+ + ++++G RG+ V +S + ++
Sbjct: 184 FDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVN 243
Query: 119 MALK-LDQEVVRGRPVKISCAV--PPKK 143
A++ LD + GR +++S A PP++
Sbjct: 244 NAIESLDGVDLNGRAIRVSPAEARPPRR 271
>sp|Q5M9F1|RBM34_RAT RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
Length = 428
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 71/131 (54%), Gaps = 17/131 (12%)
Query: 13 AIINFRTEGAVKRALALDGSEM-DGLFLKIQ--PYKATKAKRTSDFTPKIVEGYNRIYIG 69
A + F+ E A +AL +G+++ +G +++ A++ KR+ +++G
Sbjct: 244 AYVVFKEERAAAKALQRNGAQIAEGFRIRVDLASETASRDKRS-------------VFVG 290
Query: 70 NLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVV 128
NL + + E L++ F DC I ++R N TG RG+ +V F ++ ++ +ALKL+ +
Sbjct: 291 NLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSEL 350
Query: 129 RGRPVKISCAV 139
GR +++ +V
Sbjct: 351 MGRKLRVMRSV 361
>sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2 OS=Homo sapiens
GN=PABPN1L PE=2 SV=1
Length = 278
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 58 KIVEGYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLS 116
K+ + +Y+GN+ + + E+L+ FS C ++ + +K +G +GYA+++F+ S
Sbjct: 141 KVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGS 200
Query: 117 LSMALKLDQEVVRGRPVKI 135
+ A++LDQ + RGR +K+
Sbjct: 201 VQAAVELDQSLFRGRVIKV 219
>sp|Q5RBR8|IF4H_PONAB Eukaryotic translation initiation factor 4H OS=Pongo abelii
GN=EIF4H PE=2 SV=1
Length = 228
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D I S+R +K+T +F+G+ +V+F + SL AL D
Sbjct: 45 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 104
Query: 127 VVRGRPVKISCA 138
++ R +++ A
Sbjct: 105 LLGDRSLRVDIA 116
>sp|Q1JPH6|IF4H_BOVIN Eukaryotic translation initiation factor 4H OS=Bos taurus GN=EIF4H
PE=2 SV=1
Length = 228
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D I S+R +K+T +F+G+ +V+F + SL AL D
Sbjct: 45 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 104
Query: 127 VVRGRPVKISCA 138
++ R +++ A
Sbjct: 105 LLGDRSLRVDIA 116
>sp|Q8C5L7|RBM34_MOUSE RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1
Length = 375
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 71/131 (54%), Gaps = 17/131 (12%)
Query: 13 AIINFRTEGAVKRALALDGSEM-DGLFLKIQ--PYKATKAKRTSDFTPKIVEGYNRIYIG 69
A + F+ E A +AL +G+++ +G +++ A++ KR+ +++G
Sbjct: 250 AYVVFKDESAAAKALQRNGAQIAEGFRIRVDLASETASRDKRS-------------VFVG 296
Query: 70 NLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVV 128
NL + I + L++ F DC I ++R N TG RG+ +V F ++ ++ +ALKL+ +
Sbjct: 297 NLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSEL 356
Query: 129 RGRPVKISCAV 139
GR +++ +V
Sbjct: 357 MGRKLRVMRSV 367
>sp|Q75A83|MRD1_ASHGO Multiple RNA-binding domain-containing protein 1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=MRD1 PE=3 SV=2
Length = 838
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 7/140 (5%)
Query: 65 RIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA-LK 122
R+++ N+ +D TEED K+LFS ++ + + TG+ +G+A+V F D + A ++
Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIE 361
Query: 123 LDQEVVRGRPVKISCAVPPK----KGINSKSRSLPSNKRATSKVTDSAGLGTSNDA-DNS 177
LD+++ +GR + I A K + K+ L + K T + + N N
Sbjct: 362 LDKQIFQGRLLHILPADAKKTHRLDEFDLKNLPLKKQRELKRKATAAQQTFSWNSLFMNQ 421
Query: 178 GAVTSNVAANAGSGTSDVTE 197
AV S+VAA G S + +
Sbjct: 422 DAVLSSVAAKLGMEKSQLID 441
>sp|Q9WUK2|IF4H_MOUSE Eukaryotic translation initiation factor 4H OS=Mus musculus
GN=Eif4h PE=1 SV=3
Length = 248
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D I S+R +K+T +F+G+ +V+F + SL AL D
Sbjct: 45 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 104
Query: 127 VVRGRPVKISCA 138
++ R +++ A
Sbjct: 105 LLGDRSLRVDIA 116
>sp|Q5XI72|IF4H_RAT Eukaryotic translation initiation factor 4H OS=Rattus norvegicus
GN=Eif4h PE=1 SV=1
Length = 248
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D I S+R +K+T +F+G+ +V+F + SL AL D
Sbjct: 45 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 104
Query: 127 VVRGRPVKISCA 138
++ R +++ A
Sbjct: 105 LLGDRSLRVDIA 116
>sp|Q15056|IF4H_HUMAN Eukaryotic translation initiation factor 4H OS=Homo sapiens
GN=EIF4H PE=1 SV=5
Length = 248
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 67 YIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQE 126
Y+GNL ++ + D+ +F D I S+R +K+T +F+G+ +V+F + SL AL D
Sbjct: 45 YVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGA 104
Query: 127 VVRGRPVKISCA 138
++ R +++ A
Sbjct: 105 LLGDRSLRVDIA 116
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 67/126 (53%), Gaps = 13/126 (10%)
Query: 4 PDTGKFRGIAIINFRTEGAVKRAL-ALDGSEMDGLFLKI-QPYKATKAKRTSDFTPKIVE 61
P T K +G A + + + AL ++G+ M G +K+ +P +A++ D + +
Sbjct: 165 PITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAK 224
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSD------CKISSLRFGTNKETGEFRGYAHVDFSDSL 115
+NRIY+ ++ D++EED+K +F CK++ GT+ T +GY +++++
Sbjct: 225 SFNRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQ---GTSLHT--HKGYGFIEYANKQ 279
Query: 116 SLSMAL 121
++ A+
Sbjct: 280 AMDEAI 285
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Query: 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVE 61
T P TG+ RG + F+ +V++ L L ++DG + + KA K K PK
Sbjct: 63 TDPVTGRSRGFGFVLFKDAASVEKVLELKEHKLDGKLIDPKRAKALKGKE----PPK--- 115
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
++++G LS D +EE +K+ F +I ++ + +T E RG+ + ++D +
Sbjct: 116 ---KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 172
Query: 121 LKLDQEVVRGRPVKISCAVP 140
L+ + +I A P
Sbjct: 173 LESRYHQIGSGKCEIKVAQP 192
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Query: 65 RIYIGNLSWDITEEDLKKLFS------DCKISSLRFGTNKETGEFRGYAHVDFSDSLSLS 118
+++IG LSWD +++DL + S DC I T+ TG RG+ V F D+ S+
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIK-----TDPVTGRSRGFGFVLFKDAASVE 85
Query: 119 MALKLDQEVVRGRPVK------ISCAVPPKK 143
L+L + + G+ + + PPKK
Sbjct: 86 KVLELKEHKLDGKLIDPKRAKALKGKEPPKK 116
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 21/135 (15%)
Query: 5 DTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKI----- 59
+ G RG + F + K+AL L G ++DG +P + A +TP
Sbjct: 346 EDGSSRGFGHVQFASSEEAKKALELHGCDLDG-----RPVRLDLAHERGAYTPHSRNDTG 400
Query: 60 -VEGYNR-----IYIGNLSWDITE----EDLKKLFSDC-KISSLRFGTNKETGEFRGYAH 108
+ NR I++ + E E L+ F+DC +I+ + ++ETG +G A+
Sbjct: 401 SFQKQNRGSSQSIFVKGFDSSLEESKIRESLEGHFADCGEITRVSVPMDRETGASKGIAY 460
Query: 109 VDFSDSLSLSMALKL 123
+DF D S S AL+L
Sbjct: 461 IDFKDQASFSKALEL 475
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 5 DTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKI 41
+TG +GIA I+F+ + + +AL L GS++ G L +
Sbjct: 451 ETGASKGIAYIDFKDQASFSKALELSGSDLGGYNLYV 487
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 27/160 (16%)
Query: 6 TGKFRGIAIINFRTEGAVKRA-LALDGSEMDGLFLKIQPYKATKAKRTSDFTP------- 57
TG+ RG + T+ V+ A +G E+DG +++ A + S F
Sbjct: 124 TGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSS 183
Query: 58 -----------------KIVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKE 99
+ V+ NR+Y+GNLSW + + LK+LFS+ + + +++
Sbjct: 184 YGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRD 243
Query: 100 TGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138
+G RG+ V +S S ++ A+ L+ + GR +++S A
Sbjct: 244 SGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283
>sp|Q9WX39|RBPF_NOSS1 Putative RNA-binding protein RbpF OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpF PE=3 SV=3
Length = 105
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-L 123
IY+GNLS+++T+ED+ +F++ + + T++ETG RG+A V+ + A++ L
Sbjct: 3 IYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIEGL 62
Query: 124 DQEVVRGRPVKISCAVP 140
D GR +K++ A P
Sbjct: 63 DGAEWMGRDLKVNKAKP 79
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVE 61
T P TG+ RG + F+ +V + L L ++DG + + KA K K PK
Sbjct: 181 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKE----PPK--- 233
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
++++G LS D +EE +K+ F +I ++ + +T E RG+ + ++D +
Sbjct: 234 ---KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 290
Query: 121 LK 122
L+
Sbjct: 291 LE 292
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Query: 65 RIYIGNLSWDITEEDLKKLFS------DCKISSLRFGTNKETGEFRGYAHVDFSDSLSLS 118
+++IG LSWD +++DL + S DC I T+ TG RG+ V F D+ S+
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIK-----TDPVTGRSRGFGFVLFKDAASVD 203
Query: 119 MALKLDQEVVRGRPVKISCA------VPPKK 143
L+L + + G+ + A PPKK
Sbjct: 204 KVLELKEHKLDGKLIDPKRAKALKGKEPPKK 234
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 4 PDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGY 63
P TG+ RG + F+ +V + L L ++DG + + KA K K PK
Sbjct: 86 PVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKE----PPK----- 136
Query: 64 NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122
++++G LS D +EE +K+ F +I ++ + +T E RG+ + ++D + L+
Sbjct: 137 -KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 195
Query: 123 LDQEVVRGRPVKISCAVP 140
+ +I A P
Sbjct: 196 SRYHQIGSGKCEIKVAQP 213
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 17/92 (18%)
Query: 64 NRIYIGNLSWDITEEDLKKLFS------DCKISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
N+++IG LSWD +++DL + S DC I T+ TG RG+ V F D+ S+
Sbjct: 51 NKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIK-----TDPVTGRSRGFGFVLFKDAASV 105
Query: 118 SMALKLDQEVVRGRPVKISCA------VPPKK 143
L+L + + G+ + A PPKK
Sbjct: 106 DKVLELKEHKLDGKLIDPKRAKALKGKEPPKK 137
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVE 61
T P TG+ RG + F+ +V + L L ++DG + + KA K K PK
Sbjct: 62 TDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKE----PPK--- 114
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
++++G LS D +EE +K+ F +I ++ + +T E RG+ + ++D +
Sbjct: 115 ---KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKL 171
Query: 121 LKLDQEVVRGRPVKISCAVP 140
L+ + +I A P
Sbjct: 172 LESRYHQIGSGKCEIKVAQP 191
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Query: 65 RIYIGNLSWDITEEDLKKLFS------DCKISSLRFGTNKETGEFRGYAHVDFSDSLSLS 118
+++IG LSWD +++DL + S DC I T+ TG RG+ V F D+ S+
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIK-----TDPVTGRSRGFGFVLFKDAASVD 84
Query: 119 MALKLDQEVVRGRPVK------ISCAVPPKK 143
L+L + + G+ + + PPKK
Sbjct: 85 KVLELKEHKLDGKLIDPKRAKALKGKEPPKK 115
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 24/161 (14%)
Query: 6 TGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFT--PKIVEG 62
TG+ RG + + V+ A +G E+DG L++ KR F+ P+ G
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN-AGPPPPKREDGFSRGPRSSFG 186
Query: 63 Y----------------NRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRG 105
NR+Y+GNLSW + + L+ LFS+ K+ R ++++G +G
Sbjct: 187 SSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKG 246
Query: 106 YAHVDFSDSLSLSMALK-LDQEVVRGRPVKISCAV--PPKK 143
+ V + S + A+K LD + GR +++S A PP++
Sbjct: 247 FGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRR 287
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 65 RIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSL-SMALK 122
++++GNL +++ L +LF + + +K TG RG+ V S + + A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 123 LDQEVVRGRPVKISCAVPPKKGINSKSR 150
+ + GRP++++ PP K + SR
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSR 179
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
+Y+GN+ + +T E+L+ F+ C ++ + +K TG +G+A+++FS+ + AL L+
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLN 116
Query: 125 QEVVRGRPVKIS 136
++ RP+K++
Sbjct: 117 GSMLHERPLKVT 128
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
Query: 6 TGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA---KRTSDFTPKIVE 61
T + RG ++F + ++A+ + G E+DG + + A R F E
Sbjct: 205 TDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSE 264
Query: 62 GYNRIYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120
+ +++GNLS++ + + +LF+ ++ S+R T+ ET + +G+ +V FS+ A
Sbjct: 265 PSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKA 324
Query: 121 LK-LDQEVVRGRPVKISCAVP 140
L L E + RPV++ + P
Sbjct: 325 LDALQGEYIDNRPVRLDFSSP 345
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 66 IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLD 124
I++G LSW I +E LKK F + R + T RGY +VDF + S A K
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENK---SYAEKAI 226
Query: 125 QEV----VRGRPVKISCAVPPKKGINSKSRSL 152
QE+ + GRP+ + G N +++
Sbjct: 227 QEMQGKEIDGRPINCDMSTSKPAGNNDRAKKF 258
>sp|B0BNE4|EPAB2_RAT Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus
GN=Pabpn1l PE=2 SV=1
Length = 269
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 60 VEGYNR-IYIGNLSWDITEEDLKKLFSDC-KISSLRFGTNKETGEFRGYAHVDFSDSLSL 117
VE +R +Y+GN+ + + +L+ FS C +I + +K +G +GYA+++F+ S+
Sbjct: 134 VEADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSV 193
Query: 118 SMALKLDQEVVRGRPVKI 135
A++LD+ RGR +K+
Sbjct: 194 QAAVRLDESTFRGRVIKV 211
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 21/106 (19%)
Query: 62 GYNRIYIGNLSWDITEEDLKKLFS------DCKISSLRFGTNKETGEFRGYAHVDFSDSL 115
G ++ GNLS+ I D++ F D ++SS + G F+GY H++F+
Sbjct: 382 GSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSF------DDGSFKGYGHIEFASPE 435
Query: 116 SLSMALKLDQEVVRGRPVKISCA---------VPPKKGINSKSRSL 152
AL+++ +++ GR V++ A P +KG S+SR++
Sbjct: 436 EAQKALEMNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQSRTI 481
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 5 DTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYN 64
D G F+G I F + ++AL ++G + G +++ R S+ K +
Sbjct: 419 DDGSFKGYGHIEFASPEEAQKALEMNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQS 478
Query: 65 R-IYIGNLSWDITEEDLKK----LFSDC-KISSLRFGTNKETGEFRGYAHVD----FSDS 114
R IY+ S + E+++KK FS C +++ + T++ETG RG+A++D F ++
Sbjct: 479 RTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEA 538
Query: 115 LSLS 118
L LS
Sbjct: 539 LQLS 542
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,524,143
Number of Sequences: 539616
Number of extensions: 4509045
Number of successful extensions: 13245
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 541
Number of HSP's that attempted gapping in prelim test: 11701
Number of HSP's gapped (non-prelim): 1659
length of query: 311
length of database: 191,569,459
effective HSP length: 117
effective length of query: 194
effective length of database: 128,434,387
effective search space: 24916271078
effective search space used: 24916271078
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)