Query 021488
Match_columns 311
No_of_seqs 425 out of 2796
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 04:52:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 99.9 4.6E-25 1.6E-29 183.6 16.6 139 2-144 47-186 (196)
2 2yh0_A Splicing factor U2AF 65 99.9 8.3E-25 2.8E-29 182.3 14.0 140 4-143 45-196 (198)
3 3md3_A Nuclear and cytoplasmic 99.9 4.4E-24 1.5E-28 172.6 17.0 128 4-139 35-165 (166)
4 1fje_B Nucleolin RBD12, protei 99.9 8.7E-25 3E-29 178.8 12.9 129 1-142 45-175 (175)
5 2qfj_A FBP-interacting repress 99.9 1.3E-24 4.6E-29 183.6 13.0 144 1-144 61-208 (216)
6 1b7f_A Protein (SXL-lethal pro 99.9 3.9E-24 1.3E-28 173.5 15.2 127 2-138 37-168 (168)
7 2cjk_A Nuclear polyadenylated 99.9 7.5E-25 2.6E-29 177.7 10.0 131 1-142 36-167 (167)
8 4f02_A Polyadenylate-binding p 99.9 3.4E-24 1.2E-28 181.2 13.6 132 1-142 48-182 (213)
9 2g4b_A Splicing factor U2AF 65 99.9 2.8E-24 9.5E-29 175.1 12.4 124 5-138 46-171 (172)
10 1fxl_A Paraneoplastic encephal 99.9 8.2E-24 2.8E-28 171.2 15.2 127 2-138 36-167 (167)
11 3smz_A Protein raver-1, ribonu 99.9 2.7E-22 9.1E-27 176.8 16.7 134 2-143 129-266 (284)
12 2kn4_A Immunoglobulin G-bindin 99.9 1.6E-22 5.6E-27 162.8 13.7 137 7-143 10-152 (158)
13 2ghp_A U4/U6 snRNA-associated 99.9 3E-22 1E-26 177.1 15.2 135 5-142 154-292 (292)
14 3nmr_A Cugbp ELAV-like family 99.9 4.1E-22 1.4E-26 162.5 13.8 128 2-139 37-175 (175)
15 3pgw_A U1-A; protein-RNA compl 99.9 3E-21 1E-25 169.8 16.1 130 5-139 47-281 (282)
16 3smz_A Protein raver-1, ribonu 99.9 8.9E-21 3.1E-25 167.0 16.3 121 7-143 54-177 (284)
17 3tyt_A Heterogeneous nuclear r 99.9 4.6E-21 1.6E-25 160.8 13.3 128 9-138 41-204 (205)
18 2i2y_A Fusion protein consists 99.8 4.4E-21 1.5E-25 153.1 11.2 131 6-142 9-149 (150)
19 2adc_A Polypyrimidine tract-bi 99.8 3.2E-20 1.1E-24 158.5 14.6 127 10-141 72-228 (229)
20 1qm9_A Polypyrimidine tract-bi 99.8 2E-20 6.8E-25 156.0 12.1 127 10-141 41-197 (198)
21 2ghp_A U4/U6 snRNA-associated 99.8 3.3E-20 1.1E-24 164.0 12.9 118 9-144 80-200 (292)
22 3sde_A Paraspeckle component 1 99.8 5.1E-20 1.8E-24 160.3 13.9 120 7-143 55-181 (261)
23 4fxv_A ELAV-like protein 1; RN 99.8 6.2E-19 2.1E-23 130.4 11.0 79 62-140 18-98 (99)
24 2lea_A Serine/arginine-rich sp 99.8 3.5E-19 1.2E-23 139.3 8.3 122 11-143 5-129 (135)
25 2lxi_A RNA-binding protein 10; 99.8 5.8E-19 2E-23 128.5 7.1 81 63-143 1-85 (91)
26 2lli_A Protein AIR2; RNA surve 99.8 1.5E-18 5.2E-23 133.4 8.9 117 169-296 5-124 (124)
27 3s8s_A Histone-lysine N-methyl 99.8 6.8E-18 2.3E-22 127.1 12.0 80 62-141 5-86 (110)
28 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.5E-18 1.5E-22 137.8 11.0 129 15-143 11-154 (165)
29 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.2E-17 4.2E-22 120.2 10.8 81 62-142 5-87 (87)
30 3md1_A Nuclear and cytoplasmic 99.7 1.8E-17 6.3E-22 118.2 11.7 79 64-142 2-82 (83)
31 2cq0_A Eukaryotic translation 99.7 3.2E-17 1.1E-21 122.0 13.4 85 60-144 12-98 (103)
32 2dgs_A DAZ-associated protein 99.7 2.6E-17 8.8E-22 121.6 12.8 85 60-144 7-92 (99)
33 2lkz_A RNA-binding protein 5; 99.7 4.9E-18 1.7E-22 124.3 8.4 80 61-140 7-94 (95)
34 2dgo_A Cytotoxic granule-assoc 99.7 6.4E-17 2.2E-21 122.8 14.3 86 60-145 12-99 (115)
35 1whw_A Hypothetical protein ri 99.7 3.1E-17 1.1E-21 121.1 11.9 84 61-144 6-91 (99)
36 2do4_A Squamous cell carcinoma 99.7 4.7E-17 1.6E-21 120.4 12.8 84 59-143 13-98 (100)
37 2dng_A Eukaryotic translation 99.7 8.4E-17 2.9E-21 119.7 13.9 84 60-144 12-96 (103)
38 1x5t_A Splicing factor 3B subu 99.7 2.5E-17 8.4E-22 120.9 10.8 83 62-144 4-89 (96)
39 2dnz_A Probable RNA-binding pr 99.7 4.2E-17 1.4E-21 119.4 11.7 83 62-144 4-88 (95)
40 2cpz_A CUG triplet repeat RNA- 99.7 5E-17 1.7E-21 123.5 12.5 85 60-144 22-108 (115)
41 1x4h_A RNA-binding protein 28; 99.7 4.2E-17 1.5E-21 123.0 11.9 88 58-145 10-105 (111)
42 2dnm_A SRP46 splicing factor; 99.7 2.6E-17 8.8E-22 122.5 10.2 86 58-143 8-95 (103)
43 2cqb_A Peptidyl-prolyl CIS-tra 99.7 4.2E-17 1.4E-21 121.1 11.2 85 60-144 9-95 (102)
44 1x5u_A Splicing factor 3B subu 99.7 5.2E-17 1.8E-21 121.3 11.6 86 59-144 11-98 (105)
45 3s7r_A Heterogeneous nuclear r 99.7 6.8E-17 2.3E-21 116.3 11.8 79 60-138 8-87 (87)
46 2x1f_A MRNA 3'-END-processing 99.7 3.6E-17 1.2E-21 120.1 10.5 82 62-143 1-84 (96)
47 1wi8_A EIF-4B, eukaryotic tran 99.7 8.7E-17 3E-21 119.9 12.4 83 61-144 13-97 (104)
48 1p27_B RNA-binding protein 8A; 99.7 4.4E-17 1.5E-21 121.9 10.6 85 59-143 19-105 (106)
49 2jrs_A RNA-binding protein 39; 99.7 5.1E-17 1.7E-21 122.0 10.9 85 58-142 21-107 (108)
50 3mdf_A Peptidyl-prolyl CIS-tra 99.7 4.6E-17 1.6E-21 116.7 10.1 79 61-139 5-85 (85)
51 1x5s_A Cold-inducible RNA-bind 99.7 4.8E-17 1.6E-21 120.8 10.4 85 60-144 9-95 (102)
52 2cqc_A Arginine/serine-rich sp 99.7 7.1E-17 2.4E-21 118.2 11.2 81 60-140 12-94 (95)
53 2cpf_A RNA binding motif prote 99.7 6.1E-17 2.1E-21 119.3 10.9 83 62-144 4-91 (98)
54 2e5h_A Zinc finger CCHC-type a 99.7 9E-17 3.1E-21 117.4 11.2 80 60-139 13-94 (94)
55 1oo0_B CG8781-PA, drosophila Y 99.7 6.3E-17 2.1E-21 121.9 10.5 86 58-143 21-108 (110)
56 2la6_A RNA-binding protein FUS 99.7 9.4E-17 3.2E-21 118.6 11.2 82 58-139 8-99 (99)
57 4f25_A Polyadenylate-binding p 99.7 7.4E-17 2.5E-21 122.5 10.9 80 62-143 4-85 (115)
58 3p5t_L Cleavage and polyadenyl 99.7 9.7E-18 3.3E-22 121.7 5.7 80 64-143 2-85 (90)
59 2cph_A RNA binding motif prote 99.7 1E-16 3.6E-21 120.0 11.4 86 59-144 11-100 (107)
60 2d9p_A Polyadenylate-binding p 99.7 1.8E-16 6.2E-21 117.9 12.5 82 61-144 13-96 (103)
61 3ucg_A Polyadenylate-binding p 99.7 1.4E-16 4.7E-21 115.2 11.4 80 63-142 6-86 (89)
62 2cpe_A RNA-binding protein EWS 99.7 1.2E-16 4.2E-21 120.9 11.6 86 59-144 11-106 (113)
63 2rs2_A Musashi-1, RNA-binding 99.7 1E-16 3.4E-21 120.6 11.0 86 59-144 21-107 (109)
64 2dnh_A Bruno-like 5, RNA bindi 99.7 2.1E-16 7.3E-21 117.9 12.7 83 61-144 13-100 (105)
65 2fy1_A RNA-binding motif prote 99.7 1.3E-16 4.4E-21 121.4 11.4 83 61-144 5-89 (116)
66 2div_A TRNA selenocysteine ass 99.7 9.5E-17 3.3E-21 118.5 10.4 83 61-143 7-96 (99)
67 2dgp_A Bruno-like 4, RNA bindi 99.7 1E-16 3.4E-21 119.9 10.6 85 60-144 10-99 (106)
68 2cqd_A RNA-binding region cont 99.7 2.3E-16 7.9E-21 120.0 12.4 84 59-143 13-98 (116)
69 2dh8_A DAZ-associated protein 99.7 1.1E-16 3.8E-21 119.5 10.4 86 59-144 12-98 (105)
70 2cqg_A TDP-43, TAR DNA-binding 99.7 4.8E-16 1.6E-20 115.6 13.9 85 59-144 11-96 (103)
71 1u6f_A Tcubp1, RNA-binding pro 99.7 3E-16 1E-20 123.2 13.1 85 60-144 39-125 (139)
72 2cq3_A RNA-binding protein 9; 99.7 5.4E-16 1.8E-20 115.3 13.7 84 59-144 11-96 (103)
73 4a8x_A RNA-binding protein wit 99.7 1.1E-16 3.7E-21 115.4 9.5 81 62-142 3-86 (88)
74 1x4b_A Heterogeneous nuclear r 99.7 1.9E-16 6.4E-21 120.4 11.2 84 61-144 25-109 (116)
75 2kxn_B Transformer-2 protein h 99.7 7.5E-17 2.6E-21 125.0 9.1 85 59-143 42-128 (129)
76 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.3E-16 1.1E-20 125.5 13.0 84 60-143 36-121 (156)
77 2cqi_A Nucleolysin TIAR; RNA r 99.7 4.8E-16 1.7E-20 115.5 13.0 84 59-144 11-96 (103)
78 1p1t_A Cleavage stimulation fa 99.7 5.4E-17 1.8E-21 120.9 7.7 83 61-143 6-90 (104)
79 1wez_A HnRNP H', FTP-3, hetero 99.7 1.8E-16 6.1E-21 117.7 10.5 81 61-143 13-94 (102)
80 2do0_A HnRNP M, heterogeneous 99.7 6.7E-16 2.3E-20 116.9 13.8 83 60-143 12-96 (114)
81 2dgw_A Probable RNA-binding pr 99.7 5.4E-16 1.8E-20 112.6 12.7 82 61-143 8-89 (91)
82 2ywk_A Putative RNA-binding pr 99.7 1.9E-16 6.6E-21 115.9 10.3 80 60-140 13-94 (95)
83 1s79_A Lupus LA protein; RRM, 99.7 9.2E-17 3.1E-21 119.4 8.6 78 62-140 10-88 (103)
84 3ulh_A THO complex subunit 4; 99.7 2.8E-16 9.5E-21 117.7 11.3 80 59-139 25-106 (107)
85 2khc_A Testis-specific RNP-typ 99.7 2.8E-16 9.5E-21 119.9 11.2 80 60-139 37-118 (118)
86 2cqp_A RNA-binding protein 12; 99.7 1.8E-16 6.1E-21 116.8 9.6 82 61-142 13-96 (98)
87 2mss_A Protein (musashi1); RNA 99.7 6.5E-17 2.2E-21 113.1 6.6 74 65-138 1-75 (75)
88 3ns6_A Eukaryotic translation 99.7 2.6E-17 8.8E-22 121.9 4.7 80 62-141 5-93 (100)
89 3ex7_B RNA-binding protein 8A; 99.7 1.6E-16 5.5E-21 122.6 9.1 86 59-144 18-105 (126)
90 3n9u_C Cleavage and polyadenyl 99.7 2.2E-16 7.5E-21 126.3 10.1 80 62-141 54-137 (156)
91 2dgv_A HnRNP M, heterogeneous 99.7 3.6E-16 1.2E-20 113.7 10.4 82 60-143 5-88 (92)
92 2j76_E EIF-4B, EIF4B, eukaryot 99.7 7.9E-17 2.7E-21 119.2 6.9 82 60-142 16-99 (100)
93 2dgx_A KIAA0430 protein; RRM d 99.7 4.2E-16 1.5E-20 114.4 10.6 79 62-143 8-92 (96)
94 2jwn_A Embryonic polyadenylate 99.7 5.1E-16 1.7E-20 119.5 11.6 82 62-143 35-117 (124)
95 2dis_A Unnamed protein product 99.7 3.7E-16 1.3E-20 117.4 10.4 83 62-144 7-95 (109)
96 1sjq_A Polypyrimidine tract-bi 99.7 2.1E-16 7E-21 117.1 8.7 78 61-144 14-95 (105)
97 2cq4_A RNA binding motif prote 99.7 1.2E-16 4.3E-21 121.1 7.7 82 61-142 23-105 (114)
98 2dhg_A TRNA selenocysteine ass 99.7 3.6E-16 1.2E-20 116.4 10.1 84 61-145 7-94 (104)
99 2ek1_A RNA-binding protein 12; 99.7 1.6E-16 5.3E-21 116.4 7.9 79 62-140 14-94 (95)
100 2fc8_A NCL protein; structure 99.7 1.2E-15 4.2E-20 113.1 12.8 83 60-144 12-95 (102)
101 2cpy_A RNA-binding protein 12; 99.7 2E-16 7E-21 119.9 8.5 82 60-142 12-95 (114)
102 2cpi_A CCR4-NOT transcription 99.7 5E-16 1.7E-20 117.2 10.4 83 61-143 13-103 (111)
103 3r27_A HnRNP L, heterogeneous 99.7 3.6E-16 1.2E-20 114.6 9.2 77 60-142 18-98 (100)
104 1wg5_A Heterogeneous nuclear r 99.7 6.5E-16 2.2E-20 115.1 10.7 81 61-142 13-95 (104)
105 2lli_A Protein AIR2; RNA surve 99.7 1.3E-16 4.5E-21 122.5 7.0 77 210-297 4-84 (124)
106 1x4e_A RNA binding motif, sing 99.7 9.6E-17 3.3E-21 115.0 5.8 77 62-138 4-82 (85)
107 1x4a_A Splicing factor, argini 99.7 1.5E-15 5.2E-20 114.1 12.5 83 59-144 18-102 (109)
108 2m2b_A RNA-binding protein 10; 99.7 1.3E-16 4.5E-21 124.0 6.8 85 58-143 18-110 (131)
109 2db1_A Heterogeneous nuclear r 99.7 7.9E-16 2.7E-20 117.4 10.9 80 61-141 15-98 (118)
110 2fc9_A NCL protein; structure 99.7 1.7E-15 5.7E-20 112.2 12.3 82 59-144 11-94 (101)
111 1x4c_A Splicing factor, argini 99.6 2.1E-15 7.1E-20 113.2 12.6 77 61-144 13-96 (108)
112 2hgl_A HNRPF protein, heteroge 99.6 5.8E-16 2E-20 120.8 9.5 79 61-140 42-124 (136)
113 1x5o_A RNA binding motif, sing 99.6 1.8E-15 6E-20 114.6 12.0 81 60-141 22-112 (114)
114 2hgn_A Heterogeneous nuclear r 99.6 8.4E-17 2.9E-21 125.9 4.6 124 10-143 1-125 (139)
115 2kt5_A RNA and export factor-b 99.6 1.5E-15 5.1E-20 116.8 11.6 83 60-143 32-116 (124)
116 2cq1_A PTB-like protein L; RRM 99.6 3.2E-15 1.1E-19 110.5 12.8 79 60-144 12-94 (101)
117 1x4d_A Matrin 3; structural ge 99.6 8.2E-16 2.8E-20 113.7 9.6 77 61-143 13-94 (102)
118 2ki2_A SS-DNA binding protein 99.6 1.3E-16 4.3E-21 115.7 5.1 79 64-143 2-82 (90)
119 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.1E-15 3.7E-20 120.0 10.8 80 59-138 59-140 (140)
120 2err_A Ataxin-2-binding protei 99.6 8.8E-16 3E-20 115.4 9.8 82 59-142 25-108 (109)
121 2dnn_A RNA-binding protein 12; 99.6 9.8E-16 3.3E-20 114.9 9.8 78 62-140 15-92 (109)
122 2ad9_A Polypyrimidine tract-bi 99.6 1.3E-15 4.3E-20 115.6 10.4 79 60-144 28-110 (119)
123 1iqt_A AUF1, heterogeneous nuc 99.6 1.7E-16 5.9E-21 110.8 5.2 74 65-138 1-75 (75)
124 1wex_A Hypothetical protein (r 99.6 1.4E-15 4.7E-20 113.1 10.3 80 59-144 11-94 (104)
125 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2.7E-16 9.2E-21 110.4 6.0 74 64-138 1-76 (77)
126 2nlw_A Eukaryotic translation 99.6 1.3E-15 4.6E-20 113.6 9.6 80 61-142 13-101 (105)
127 1wel_A RNA-binding protein 12; 99.6 9.3E-16 3.2E-20 118.0 8.5 81 61-141 23-104 (124)
128 2dgt_A RNA-binding protein 30; 99.6 4.7E-15 1.6E-19 107.8 11.8 77 60-144 7-85 (92)
129 3nyb_B Protein AIR2; polya RNA 99.6 1.3E-16 4.5E-21 112.0 3.3 69 209-303 4-72 (83)
130 2dnq_A RNA-binding protein 4B; 99.6 2.8E-15 9.6E-20 108.5 10.5 76 61-144 6-83 (90)
131 2xs2_A Deleted in azoospermia- 99.6 8.8E-16 3E-20 113.9 7.9 81 61-143 7-88 (102)
132 2cpx_A Hypothetical protein FL 99.6 8.9E-16 3E-20 116.4 7.9 81 60-144 22-108 (115)
133 2jvr_A Nucleolar protein 3; RN 99.6 1.2E-15 4.3E-20 114.6 8.6 78 62-143 27-107 (111)
134 1why_A Hypothetical protein ri 99.6 2.4E-15 8.3E-20 110.5 10.0 78 60-143 14-95 (97)
135 2wbr_A GW182, gawky, LD47780P; 99.6 1.6E-15 5.4E-20 107.5 8.2 71 62-138 6-78 (89)
136 1fj7_A Nucleolin RBD1, protein 99.6 1.8E-16 6.3E-21 117.4 3.6 82 61-143 15-97 (101)
137 2dgu_A Heterogeneous nuclear r 99.6 4.7E-15 1.6E-19 110.2 11.3 77 60-144 8-86 (103)
138 2cpj_A Non-POU domain-containi 99.6 2.9E-15 9.8E-20 110.5 9.9 78 60-143 12-91 (99)
139 2ytc_A PRE-mRNA-splicing facto 99.6 3.3E-15 1.1E-19 106.8 10.0 75 59-139 8-85 (85)
140 2a3j_A U1 small nuclear ribonu 99.6 2.2E-15 7.5E-20 116.1 9.5 81 60-143 26-112 (127)
141 3q2s_C Cleavage and polyadenyl 99.6 1.4E-15 4.6E-20 129.5 8.8 80 62-141 67-150 (229)
142 1x4g_A Nucleolysin TIAR; struc 99.6 4.7E-15 1.6E-19 111.4 10.8 78 61-144 23-102 (109)
143 2hgm_A HNRPF protein, heteroge 99.6 1E-15 3.5E-20 117.5 7.1 79 61-140 40-120 (126)
144 2dnp_A RNA-binding protein 14; 99.6 5.5E-15 1.9E-19 107.0 10.6 75 61-143 7-83 (90)
145 2lmi_A GRSF-1, G-rich sequence 99.6 5.2E-16 1.8E-20 116.3 5.3 80 61-141 9-92 (107)
146 2jvo_A Nucleolar protein 3; nu 99.6 3.2E-15 1.1E-19 112.1 9.6 76 60-143 28-105 (108)
147 1fjc_A Nucleolin RBD2, protein 99.6 3.4E-15 1.1E-19 109.4 9.0 78 61-143 14-93 (96)
148 1nu4_A U1A RNA binding domain; 99.6 1.7E-15 5.7E-20 111.3 7.2 81 60-143 5-91 (97)
149 2xnq_A Nuclear polyadenylated 99.6 7.2E-15 2.5E-19 108.0 10.5 75 60-142 19-96 (97)
150 2lcw_A RNA-binding protein FUS 99.4 8.5E-17 2.9E-21 122.4 0.0 84 61-144 5-98 (116)
151 2li8_A Protein LIN-28 homolog 99.6 6.8E-16 2.3E-20 106.1 4.4 66 177-298 2-67 (74)
152 1wf1_A RNA-binding protein RAL 99.6 5.8E-15 2E-19 111.0 9.7 74 62-143 26-102 (110)
153 1x4f_A Matrin 3; structural ge 99.6 6E-15 2.1E-19 110.6 9.6 78 60-143 22-104 (112)
154 2dha_A FLJ20171 protein; RRM d 99.6 1.7E-15 5.7E-20 116.1 6.5 78 62-140 22-104 (123)
155 2krb_A Eukaryotic translation 99.6 1.6E-15 5.4E-20 107.6 5.8 70 64-135 2-80 (81)
156 2e5j_A Methenyltetrahydrofolat 99.6 6E-15 2.1E-19 108.4 9.1 78 61-143 17-96 (97)
157 2la4_A Nuclear and cytoplasmic 99.6 4E-15 1.4E-19 110.1 8.1 74 62-141 26-101 (101)
158 2hvz_A Splicing factor, argini 99.6 3.4E-15 1.2E-19 110.5 7.6 76 64-144 1-78 (101)
159 4f02_A Polyadenylate-binding p 99.6 1.2E-14 4.1E-19 122.4 11.6 82 61-142 13-96 (213)
160 2cpd_A Apobec-1 stimulating pr 99.6 3.7E-14 1.3E-18 104.5 12.7 77 59-143 11-91 (99)
161 2e5g_A U6 snRNA-specific termi 99.6 2E-14 6.8E-19 104.9 11.1 78 62-144 7-85 (94)
162 2cqh_A IGF-II mRNA-binding pro 99.6 6.4E-15 2.2E-19 107.3 7.9 77 61-144 6-86 (93)
163 1l3k_A Heterogeneous nuclear r 99.6 1.8E-14 6.2E-19 119.2 11.4 84 60-143 10-94 (196)
164 1fxl_A Paraneoplastic encephal 99.6 2.3E-14 7.7E-19 115.3 11.6 80 63-142 2-83 (167)
165 2kvi_A Nuclear polyadenylated 99.6 6.3E-15 2.2E-19 108.0 7.5 75 61-143 8-85 (96)
166 3lqv_A PRE-mRNA branch site pr 99.6 9.5E-15 3.3E-19 110.7 8.5 80 61-143 6-87 (115)
167 2f3j_A RNA and export factor b 99.6 1E-14 3.6E-19 119.1 8.8 82 60-142 85-168 (177)
168 1b7f_A Protein (SXL-lethal pro 99.5 2E-14 6.9E-19 115.9 10.0 82 62-143 2-85 (168)
169 3d2w_A TAR DNA-binding protein 99.5 2.5E-14 8.4E-19 103.3 9.1 77 61-143 9-86 (89)
170 2j8a_A Histone-lysine N-methyl 99.5 2.1E-14 7.1E-19 108.6 8.8 76 64-139 3-94 (136)
171 2cq2_A Hypothetical protein LO 99.5 2.3E-14 7.8E-19 107.6 9.0 78 61-144 23-109 (114)
172 1x5p_A Negative elongation fac 99.5 1E-13 3.4E-18 101.8 12.3 76 61-144 13-90 (97)
173 2e44_A Insulin-like growth fac 99.5 2.7E-14 9.3E-19 104.5 8.7 77 62-142 14-93 (96)
174 1whx_A Hypothetical protein ri 99.5 2.2E-14 7.6E-19 108.0 8.2 75 63-143 10-86 (111)
175 3egn_A RNA-binding protein 40; 99.5 6.6E-15 2.2E-19 116.1 5.5 80 61-143 43-132 (143)
176 1wg1_A KIAA1579 protein, homol 99.5 4.6E-14 1.6E-18 101.7 9.2 75 62-142 4-79 (88)
177 3pgw_S U1-70K; protein-RNA com 99.5 3.6E-14 1.2E-18 131.7 10.7 83 61-143 100-184 (437)
178 1wf0_A TDP-43, TAR DNA-binding 99.5 5E-14 1.7E-18 101.4 8.7 77 62-144 4-81 (88)
179 3zzy_A Polypyrimidine tract-bi 99.5 1.5E-13 5.1E-18 105.5 11.7 75 64-143 29-108 (130)
180 2voo_A Lupus LA protein; RNA-b 99.5 6.1E-14 2.1E-18 116.1 10.1 78 62-140 108-186 (193)
181 1sjr_A Polypyrimidine tract-bi 99.5 1.1E-13 3.9E-18 110.2 11.0 77 63-143 46-126 (164)
182 3beg_B Splicing factor, argini 99.5 2.7E-14 9.1E-19 108.3 7.0 75 62-143 15-96 (115)
183 1a1t_A Nucleocapsid protein; s 99.5 8.4E-15 2.9E-19 95.4 3.3 49 204-298 6-54 (55)
184 2diu_A KIAA0430 protein; struc 99.5 5.8E-14 2E-18 100.4 7.8 72 62-143 7-86 (96)
185 3md3_A Nuclear and cytoplasmic 99.5 1.6E-13 5.5E-18 110.2 10.8 79 64-143 1-81 (166)
186 2a51_A Nucleocapsid protein; s 99.5 9.3E-15 3.2E-19 87.9 2.6 38 212-295 2-39 (39)
187 2dnl_A Cytoplasmic polyadenyla 99.5 1.8E-13 6.2E-18 103.5 10.3 76 61-139 6-86 (114)
188 2ec7_A GAG polyprotein (PR55GA 99.5 1.2E-14 4E-19 92.1 2.8 44 208-297 4-47 (49)
189 2ihx_A Nucleocapsid (NC) prote 99.5 2.6E-14 8.8E-19 95.0 3.6 56 210-306 4-59 (61)
190 2pe8_A Splicing factor 45; RRM 99.5 5.4E-13 1.8E-17 99.2 11.0 80 61-140 6-93 (105)
191 2bz2_A Negative elongation fac 99.5 2E-13 7E-18 104.3 8.6 75 61-143 37-113 (121)
192 3tyt_A Heterogeneous nuclear r 99.5 2.6E-13 8.8E-18 113.5 9.9 76 62-142 3-81 (205)
193 2hzc_A Splicing factor U2AF 65 99.5 2.1E-13 7E-18 97.8 8.0 70 62-137 5-86 (87)
194 2qfj_A FBP-interacting repress 99.4 2.2E-13 7.5E-18 114.4 9.0 81 62-142 27-109 (216)
195 2e5i_A Heterogeneous nuclear r 99.4 9.6E-13 3.3E-17 100.5 11.7 73 65-143 27-104 (124)
196 2cjk_A Nuclear polyadenylated 99.4 2.1E-13 7.2E-18 109.8 8.2 79 62-141 2-81 (167)
197 2bl6_A Nucleocapsid protein P1 99.4 3.2E-14 1.1E-18 84.5 2.4 36 212-295 2-37 (37)
198 3nmr_A Cugbp ELAV-like family 99.4 5.5E-13 1.9E-17 108.0 9.0 81 62-142 2-89 (175)
199 1cl4_A Protein (GAG polyprotei 99.4 7.7E-14 2.6E-18 92.6 2.7 48 212-297 3-50 (60)
200 3pgw_A U1-A; protein-RNA compl 99.4 1.3E-12 4.6E-17 114.4 11.1 81 60-143 6-92 (282)
201 3u1l_A PRE-mRNA-splicing facto 99.4 4.8E-13 1.6E-17 113.6 7.1 78 60-143 131-231 (240)
202 2cqf_A RNA-binding protein LIN 99.4 2.7E-13 9.4E-18 90.5 4.1 44 209-297 6-49 (63)
203 1fje_B Nucleolin RBD12, protei 99.4 1.7E-13 5.8E-18 111.3 3.5 83 60-143 10-93 (175)
204 2dit_A HIV TAT specific factor 99.4 8.5E-12 2.9E-16 93.9 11.7 80 61-144 13-105 (112)
205 2adc_A Polypyrimidine tract-bi 99.4 2.5E-12 8.5E-17 109.4 9.6 78 61-143 32-112 (229)
206 1qm9_A Polypyrimidine tract-bi 99.3 4.2E-12 1.4E-16 105.2 7.7 76 63-143 3-81 (198)
207 3sde_A Paraspeckle component 1 99.3 9.7E-12 3.3E-16 107.8 10.1 74 61-140 20-95 (261)
208 3ts2_A Protein LIN-28 homolog 99.3 1.1E-12 3.8E-17 103.0 2.8 51 210-305 97-147 (148)
209 3v4m_A Splicing factor U2AF 65 99.3 9.8E-12 3.4E-16 92.4 7.8 79 62-140 4-96 (105)
210 2g4b_A Splicing factor U2AF 65 99.3 1.2E-11 4.1E-16 99.9 8.8 75 62-142 3-89 (172)
211 2yh0_A Splicing factor U2AF 65 99.3 1.3E-11 4.4E-16 102.1 9.1 76 62-143 3-90 (198)
212 3ue2_A Poly(U)-binding-splicin 99.2 2.7E-11 9.3E-16 91.8 9.0 79 62-140 19-108 (118)
213 1jmt_A Splicing factor U2AF 35 99.2 3E-12 1E-16 95.0 3.5 70 68-138 20-103 (104)
214 4f25_A Polyadenylate-binding p 99.2 5.8E-12 2E-16 95.3 4.6 72 6-79 41-113 (115)
215 3nyb_B Protein AIR2; polya RNA 99.2 1.5E-11 5E-16 86.2 5.4 60 169-258 6-65 (83)
216 2d9o_A DNAJ (HSP40) homolog, s 99.2 4.1E-10 1.4E-14 82.6 11.1 64 73-143 27-92 (100)
217 3tht_A Alkylated DNA repair pr 99.1 2E-10 6.9E-15 102.6 8.5 74 60-139 15-97 (345)
218 3ts2_A Protein LIN-28 homolog 99.0 9.3E-12 3.2E-16 97.8 -2.0 44 168-231 97-140 (148)
219 3s6e_A RNA-binding protein 39; 99.0 1.5E-09 5E-14 81.6 9.2 75 62-140 6-92 (114)
220 4fxv_A ELAV-like protein 1; RN 98.9 7E-10 2.4E-14 81.4 4.8 45 2-46 53-98 (99)
221 2ihx_A Nucleocapsid (NC) prote 98.9 5.2E-10 1.8E-14 74.0 3.5 48 169-232 5-52 (61)
222 2lkz_A RNA-binding protein 5; 98.9 1.2E-09 4.2E-14 79.4 5.0 46 1-46 44-94 (95)
223 2dnr_A Synaptojanin-1; RRM dom 98.9 6.5E-09 2.2E-13 73.5 8.5 71 62-140 6-85 (91)
224 2a51_A Nucleocapsid protein; s 98.9 4.6E-10 1.6E-14 67.2 1.9 38 170-228 2-39 (39)
225 2li8_A Protein LIN-28 homolog 98.9 1.2E-09 4E-14 74.9 4.1 34 276-309 23-60 (74)
226 2hvz_A Splicing factor, argini 98.9 1.1E-09 3.8E-14 80.4 4.3 64 9-72 36-100 (101)
227 3p5t_L Cleavage and polyadenyl 98.9 5.9E-10 2E-14 80.2 2.6 47 2-48 37-84 (90)
228 2cqf_A RNA-binding protein LIN 98.9 1.2E-09 4.1E-14 72.7 3.5 43 168-230 7-49 (63)
229 2lxi_A RNA-binding protein 10; 98.9 2.3E-09 8E-14 77.2 5.4 48 1-48 35-84 (91)
230 2bl6_A Nucleocapsid protein P1 98.9 9.3E-10 3.2E-14 65.0 2.6 36 170-228 2-37 (37)
231 3s8s_A Histone-lysine N-methyl 98.9 1.8E-09 6.1E-14 80.8 4.8 48 1-48 39-87 (110)
232 1owx_A Lupus LA protein, SS-B, 98.8 1.1E-08 3.7E-13 77.1 8.5 73 61-139 16-94 (121)
233 2ec7_A GAG polyprotein (PR55GA 98.8 2.2E-09 7.4E-14 67.7 3.6 42 168-230 6-47 (49)
234 2dgs_A DAZ-associated protein 98.8 7.3E-09 2.5E-13 75.7 6.9 49 1-49 43-91 (99)
235 2fy1_A RNA-binding motif prote 98.8 4.5E-09 1.5E-13 79.3 5.6 46 6-51 44-90 (116)
236 2mss_A Protein (musashi1); RNA 98.8 4.7E-09 1.6E-13 72.5 4.8 42 2-43 33-74 (75)
237 3ns6_A Eukaryotic translation 98.8 2.9E-09 9.8E-14 78.2 3.8 47 1-47 45-93 (100)
238 2dng_A Eukaryotic translation 98.8 6.4E-09 2.2E-13 76.6 5.3 48 2-49 48-95 (103)
239 1x5t_A Splicing factor 3B subu 98.8 1E-08 3.5E-13 74.4 6.3 49 1-49 39-88 (96)
240 1cl4_A Protein (GAG polyprotei 98.8 1.4E-09 4.8E-14 71.8 1.5 50 169-231 2-51 (60)
241 1fj7_A Nucleolin RBD1, protein 98.8 2.9E-09 9.9E-14 78.2 3.3 48 1-48 49-96 (101)
242 1a1t_A Nucleocapsid protein; s 98.8 3.3E-09 1.1E-13 68.7 3.1 42 168-230 12-53 (55)
243 1whw_A Hypothetical protein ri 98.8 1.5E-08 5.2E-13 73.9 7.0 49 1-49 41-90 (99)
244 3md1_A Nuclear and cytoplasmic 98.8 7.3E-09 2.5E-13 73.0 5.1 46 2-47 35-81 (83)
245 1dsq_A Nucleic acid binding pr 98.8 2.6E-09 8.9E-14 57.6 2.0 21 277-297 2-22 (26)
246 1wez_A HnRNP H', FTP-3, hetero 98.7 4.1E-09 1.4E-13 77.7 3.3 45 2-47 48-92 (102)
247 3bs9_A Nucleolysin TIA-1 isofo 98.7 7.5E-09 2.6E-13 73.6 4.5 45 2-46 40-85 (87)
248 2dnn_A RNA-binding protein 12; 98.7 1.2E-08 4E-13 76.1 5.7 45 2-47 49-93 (109)
249 2cqb_A Peptidyl-prolyl CIS-tra 98.7 1.4E-08 4.9E-13 74.5 6.1 49 1-49 45-94 (102)
250 2fc8_A NCL protein; structure 98.7 8.3E-09 2.8E-13 75.8 4.7 49 1-49 45-94 (102)
251 2x1f_A MRNA 3'-END-processing 98.7 1.5E-08 5.3E-13 73.5 6.1 49 1-49 35-84 (96)
252 2dgw_A Probable RNA-binding pr 98.7 9E-09 3.1E-13 74.0 4.6 43 5-47 45-87 (91)
253 1wi8_A EIF-4B, eukaryotic tran 98.7 1.3E-08 4.5E-13 75.0 5.6 49 1-49 47-96 (104)
254 2cpe_A RNA-binding protein EWS 98.7 1.8E-08 6E-13 75.5 6.4 49 1-49 56-105 (113)
255 2dgo_A Cytotoxic granule-assoc 98.7 2.3E-08 7.9E-13 75.1 6.8 49 2-50 49-98 (115)
256 2dnz_A Probable RNA-binding pr 98.7 1.7E-08 5.7E-13 73.1 5.7 48 2-49 39-87 (95)
257 2la6_A RNA-binding protein FUS 98.7 1E-08 3.5E-13 74.9 4.6 43 2-44 55-98 (99)
258 1x5u_A Splicing factor 3B subu 98.7 1.7E-08 5.9E-13 74.5 5.9 49 1-49 48-97 (105)
259 1x5s_A Cold-inducible RNA-bind 98.7 1.9E-08 6.5E-13 73.8 6.0 49 1-49 45-94 (102)
260 2cqp_A RNA-binding protein 12; 98.7 1.2E-08 4E-13 74.4 4.8 45 2-46 49-94 (98)
261 2j76_E EIF-4B, EIF4B, eukaryot 98.7 1.2E-08 4.2E-13 74.7 4.9 46 2-47 52-98 (100)
262 3ucg_A Polyadenylate-binding p 98.7 1E-08 3.6E-13 73.2 4.3 46 2-47 40-85 (89)
263 3mdf_A Peptidyl-prolyl CIS-tra 98.7 1.3E-08 4.4E-13 72.1 4.7 43 2-44 41-84 (85)
264 2cq0_A Eukaryotic translation 98.7 1.9E-08 6.4E-13 74.1 5.5 48 2-49 49-97 (103)
265 3n9u_C Cleavage and polyadenyl 98.7 1.1E-08 3.8E-13 81.4 4.5 47 1-47 90-137 (156)
266 2cpy_A RNA-binding protein 12; 98.7 1E-08 3.4E-13 77.1 4.0 46 2-48 50-95 (114)
267 2e5h_A Zinc finger CCHC-type a 98.7 2.1E-08 7.2E-13 72.4 5.6 44 1-44 49-93 (94)
268 2dnm_A SRP46 splicing factor; 98.7 1.6E-08 5.5E-13 74.4 5.1 49 1-49 46-95 (103)
269 2ek1_A RNA-binding protein 12; 98.7 1.3E-08 4.3E-13 73.8 4.2 44 2-45 49-93 (95)
270 1wel_A RNA-binding protein 12; 98.7 5.8E-09 2E-13 79.7 2.5 47 1-47 58-104 (124)
271 2cpz_A CUG triplet repeat RNA- 98.7 2E-08 6.8E-13 75.5 5.2 48 2-49 59-107 (115)
272 1oo0_B CG8781-PA, drosophila Y 98.7 2.4E-08 8.4E-13 74.3 5.6 47 2-48 60-107 (110)
273 2rs2_A Musashi-1, RNA-binding 98.7 3.4E-08 1.2E-12 73.6 6.1 48 1-48 58-105 (109)
274 1p27_B RNA-binding protein 8A; 98.7 1.8E-08 6.3E-13 74.5 4.6 46 2-47 57-103 (106)
275 2dgp_A Bruno-like 4, RNA bindi 98.7 4.5E-08 1.5E-12 72.3 6.6 49 1-49 46-98 (106)
276 1iqt_A AUF1, heterogeneous nuc 98.7 1.5E-08 5.3E-13 69.8 3.8 43 1-43 32-74 (75)
277 3s7r_A Heterogeneous nuclear r 98.6 1.9E-08 6.5E-13 71.6 4.3 42 2-43 45-86 (87)
278 1wg5_A Heterogeneous nuclear r 98.6 3.1E-08 1.1E-12 73.1 5.6 44 4-47 51-94 (104)
279 2cqc_A Arginine/serine-rich sp 98.6 1.9E-08 6.7E-13 72.7 4.4 44 2-45 49-93 (95)
280 1x4h_A RNA-binding protein 28; 98.6 4.6E-08 1.6E-12 72.9 6.5 49 1-49 48-103 (111)
281 2fc9_A NCL protein; structure 98.6 5.4E-08 1.9E-12 71.3 6.7 47 3-49 46-93 (101)
282 3lqv_A PRE-mRNA branch site pr 98.6 1.1E-08 3.7E-13 76.9 2.8 65 5-87 42-108 (115)
283 2do4_A Squamous cell carcinoma 98.6 2.8E-08 9.6E-13 72.7 4.9 43 6-48 54-97 (100)
284 1ufw_A Synaptojanin 2; RNP dom 98.6 6.1E-08 2.1E-12 68.9 6.4 70 62-139 14-93 (95)
285 2jrs_A RNA-binding protein 39; 98.6 1.9E-08 6.3E-13 74.9 3.9 46 2-47 60-106 (108)
286 2dis_A Unnamed protein product 98.6 9E-08 3.1E-12 71.1 7.4 48 2-49 44-94 (109)
287 2cph_A RNA binding motif prote 98.6 7E-08 2.4E-12 71.4 6.7 46 4-49 52-99 (107)
288 2kxn_B Transformer-2 protein h 98.6 2.6E-08 8.8E-13 76.6 4.5 46 2-47 80-126 (129)
289 2hgl_A HNRPF protein, heteroge 98.6 1.6E-08 5.3E-13 78.5 3.2 45 2-47 81-125 (136)
290 2lmi_A GRSF-1, G-rich sequence 98.6 1.9E-08 6.6E-13 74.6 3.5 46 2-48 48-93 (107)
291 2a3j_A U1 small nuclear ribonu 98.6 3.4E-08 1.2E-12 75.6 4.9 45 4-48 66-111 (127)
292 2dhg_A TRNA selenocysteine ass 98.6 3.1E-08 1.1E-12 73.0 4.5 47 2-49 44-92 (104)
293 2jwn_A Embryonic polyadenylate 98.6 4E-08 1.4E-12 74.8 5.3 47 2-48 70-116 (124)
294 2ki2_A SS-DNA binding protein 98.6 2.7E-08 9.2E-13 71.3 4.0 47 1-48 34-81 (90)
295 2hgm_A HNRPF protein, heteroge 98.6 1.4E-08 4.7E-13 77.6 2.5 45 2-47 77-121 (126)
296 2db1_A Heterogeneous nuclear r 98.6 2E-08 6.7E-13 76.0 3.4 44 5-48 56-99 (118)
297 2cq4_A RNA binding motif prote 98.6 1.8E-08 6E-13 75.7 3.1 49 1-49 58-106 (114)
298 1p1t_A Cleavage stimulation fa 98.6 2.6E-08 8.8E-13 73.4 3.9 48 2-49 42-90 (104)
299 1x4b_A Heterogeneous nuclear r 98.6 4.5E-08 1.5E-12 73.7 5.3 48 2-49 61-108 (116)
300 2kn4_A Immunoglobulin G-bindin 98.6 5.7E-08 2E-12 77.2 6.2 48 1-48 103-151 (158)
301 1jmt_A Splicing factor U2AF 35 98.6 3.6E-08 1.2E-12 72.8 4.4 41 4-44 62-103 (104)
302 2m2b_A RNA-binding protein 10; 98.6 3.7E-08 1.3E-12 75.9 4.5 47 1-48 58-109 (131)
303 3ex7_B RNA-binding protein 8A; 98.6 5.8E-08 2E-12 74.2 5.5 49 1-49 55-104 (126)
304 2wbr_A GW182, gawky, LD47780P; 98.6 4.5E-08 1.5E-12 69.2 4.4 37 8-44 41-78 (89)
305 2div_A TRNA selenocysteine ass 98.6 3.3E-08 1.1E-12 72.1 3.7 46 2-47 44-94 (99)
306 2dh8_A DAZ-associated protein 98.6 2.3E-08 8E-13 73.8 2.9 48 2-49 50-97 (105)
307 1u6f_A Tcubp1, RNA-binding pro 98.6 4.5E-08 1.6E-12 76.1 4.7 48 2-49 76-124 (139)
308 1a6b_B Momulv, zinc finger pro 98.6 2.5E-08 8.6E-13 59.2 2.4 23 276-298 9-31 (40)
309 2khc_A Testis-specific RNP-typ 98.6 3.7E-08 1.3E-12 74.3 3.9 44 1-44 73-117 (118)
310 3dxb_A Thioredoxin N-terminall 98.6 3.1E-07 1.1E-11 77.3 10.0 65 75-139 141-211 (222)
311 2pe8_A Splicing factor 45; RRM 98.6 6.2E-08 2.1E-12 71.6 5.0 45 3-47 48-94 (105)
312 2cpf_A RNA binding motif prote 98.6 3.9E-08 1.3E-12 71.6 3.8 44 6-49 46-90 (98)
313 2krb_A Eukaryotic translation 98.6 2.9E-08 9.9E-13 69.7 3.0 38 4-41 41-80 (81)
314 2cqd_A RNA-binding region cont 98.6 1.2E-07 4E-12 71.3 6.5 47 1-48 50-97 (116)
315 1s79_A Lupus LA protein; RRM, 98.5 5.4E-08 1.8E-12 71.7 4.3 44 2-46 45-88 (103)
316 2lea_A Serine/arginine-rich sp 98.5 6.9E-08 2.3E-12 74.8 5.1 47 2-48 81-128 (135)
317 4a8x_A RNA-binding protein wit 98.5 4.9E-08 1.7E-12 69.4 3.7 46 2-47 38-85 (88)
318 2d9p_A Polyadenylate-binding p 98.5 9.8E-08 3.4E-12 70.1 5.4 44 6-49 51-95 (103)
319 2dha_A FLJ20171 protein; RRM d 98.5 2.1E-08 7.2E-13 76.3 1.7 44 4-47 62-105 (123)
320 3ulh_A THO complex subunit 4; 98.5 7.3E-08 2.5E-12 71.3 4.4 42 3-45 64-106 (107)
321 2dnh_A Bruno-like 5, RNA bindi 98.5 9.9E-08 3.4E-12 70.3 5.0 45 5-49 51-99 (105)
322 2nlw_A Eukaryotic translation 98.5 5.9E-08 2E-12 71.7 3.7 43 4-46 55-99 (105)
323 2hgn_A Heterogeneous nuclear r 98.5 3.1E-08 1.1E-12 77.1 2.2 45 2-47 79-123 (139)
324 1uaw_A Mouse-musashi-1; RNP-ty 98.5 6E-08 2E-12 67.1 3.4 42 2-44 34-76 (77)
325 2kt5_A RNA and export factor-b 98.5 1.5E-07 5E-12 71.7 5.9 46 2-48 69-115 (124)
326 2cqg_A TDP-43, TAR DNA-binding 98.5 1.5E-07 5E-12 69.2 5.5 47 2-49 49-95 (103)
327 2cpx_A Hypothetical protein FL 98.5 1.9E-07 6.5E-12 70.0 6.1 45 5-49 62-107 (115)
328 2do0_A HnRNP M, heterogeneous 98.5 2.2E-07 7.4E-12 69.5 6.4 43 5-47 51-94 (114)
329 1h2v_Z 20 kDa nuclear CAP bind 98.5 1.2E-07 4E-12 75.3 5.0 47 2-48 73-120 (156)
330 3q2s_C Cleavage and polyadenyl 98.5 5.4E-08 1.9E-12 82.4 3.2 47 1-47 103-150 (229)
331 2cpi_A CCR4-NOT transcription 98.5 1.3E-07 4.4E-12 70.6 4.9 42 7-48 60-102 (111)
332 1fjc_A Nucleolin RBD2, protein 98.5 1.2E-07 4E-12 68.7 4.4 45 4-48 47-92 (96)
333 2ywk_A Putative RNA-binding pr 98.5 9.2E-08 3.1E-12 69.1 3.7 41 5-45 52-93 (95)
334 2dgx_A KIAA0430 protein; RRM d 98.5 2.2E-07 7.4E-12 67.4 5.7 39 10-48 52-91 (96)
335 2jvr_A Nucleolar protein 3; RN 98.5 1.7E-07 5.9E-12 69.9 5.1 41 7-47 64-105 (111)
336 2dgv_A HnRNP M, heterogeneous 98.5 1.3E-07 4.3E-12 67.9 4.2 44 5-48 43-87 (92)
337 2lcw_A RNA-binding protein FUS 97.8 2.1E-08 7.2E-13 75.5 0.0 48 2-49 49-97 (116)
338 1x4e_A RNA binding motif, sing 98.4 2.6E-08 8.9E-13 70.5 0.4 42 2-43 39-81 (85)
339 3v4m_A Splicing factor U2AF 65 98.4 2.4E-07 8.2E-12 68.4 5.2 41 7-47 56-97 (105)
340 3egn_A RNA-binding protein 40; 98.4 1E-07 3.5E-12 74.5 3.1 45 4-48 86-131 (143)
341 1x4a_A Splicing factor, argini 98.4 2.2E-07 7.6E-12 69.0 4.8 45 4-48 55-100 (109)
342 1nc8_A Nucleocapsid protein; H 98.4 8E-08 2.7E-12 53.2 1.6 20 277-296 6-25 (29)
343 1rk8_A CG8781-PA, CG8781-PA pr 98.4 2E-07 6.7E-12 74.8 4.5 48 2-49 106-154 (165)
344 2e5j_A Methenyltetrahydrofolat 98.4 2.1E-07 7.3E-12 67.5 4.3 42 6-47 52-94 (97)
345 2j8a_A Histone-lysine N-methyl 98.4 1.7E-07 5.9E-12 70.8 3.1 47 1-47 39-96 (136)
346 2cqi_A Nucleolysin TIAR; RNA r 98.4 7.8E-07 2.7E-11 65.2 6.5 43 7-49 52-95 (103)
347 2cq3_A RNA-binding protein 9; 98.3 7.2E-07 2.4E-11 65.4 6.1 43 7-49 52-95 (103)
348 3ue2_A Poly(U)-binding-splicin 98.3 3.3E-07 1.1E-11 69.1 4.1 41 6-46 67-108 (118)
349 1nu4_A U1A RNA binding domain; 98.3 1.9E-07 6.4E-12 67.7 2.6 44 5-48 46-90 (97)
350 1u6p_A GAG polyprotein; MLV, A 98.3 1.7E-07 5.9E-12 59.9 2.0 22 276-297 22-43 (56)
351 1x5o_A RNA binding motif, sing 98.3 4.4E-07 1.5E-11 67.9 4.6 43 2-45 59-110 (114)
352 2dnl_A Cytoplasmic polyadenyla 98.3 1.1E-06 3.6E-11 65.9 6.5 39 2-42 41-83 (114)
353 2dit_A HIV TAT specific factor 98.3 1E-06 3.4E-11 65.8 5.7 41 8-48 62-103 (112)
354 1x5p_A Negative elongation fac 98.3 1.1E-06 3.9E-11 63.6 5.8 42 7-48 46-88 (97)
355 2err_A Ataxin-2-binding protei 98.3 6.1E-07 2.1E-11 66.6 4.4 41 7-47 66-107 (109)
356 1wg1_A KIAA1579 protein, homol 98.3 6E-07 2.1E-11 63.9 4.1 39 8-46 38-77 (88)
357 2e5g_A U6 snRNA-specific termi 98.3 6E-07 2.1E-11 64.7 4.0 43 2-47 40-82 (94)
358 3r27_A HnRNP L, heterogeneous 98.2 8.8E-07 3E-11 64.5 4.5 40 8-47 55-97 (100)
359 2diu_A KIAA0430 protein; struc 98.2 8.7E-07 3E-11 63.2 4.3 39 11-49 47-86 (96)
360 1a6b_B Momulv, zinc finger pro 98.2 5.1E-07 1.7E-11 53.5 2.5 26 208-233 8-33 (40)
361 2cqh_A IGF-II mRNA-binding pro 98.2 1.2E-06 4.1E-11 62.9 4.9 42 8-49 42-85 (93)
362 1dsq_A Nucleic acid binding pr 98.2 2.6E-07 8.8E-12 49.7 0.9 20 211-230 3-22 (26)
363 2xs2_A Deleted in azoospermia- 98.2 2.6E-07 8.9E-12 67.7 1.2 44 2-47 43-86 (102)
364 2ysa_A Retinoblastoma-binding 98.2 5E-07 1.7E-11 57.6 2.1 20 277-296 7-26 (55)
365 2hzc_A Splicing factor U2AF 65 98.2 1.2E-06 4E-11 62.0 4.1 36 8-43 51-86 (87)
366 2cpj_A Non-POU domain-containi 98.2 1.5E-06 5E-11 63.2 4.4 41 8-48 49-90 (99)
367 3pgw_S U1-70K; protein-RNA com 98.2 1.7E-06 5.7E-11 80.2 5.7 47 1-47 135-182 (437)
368 2dnq_A RNA-binding protein 4B; 98.2 2.5E-06 8.5E-11 60.8 5.4 40 10-49 42-82 (90)
369 2cpd_A Apobec-1 stimulating pr 98.2 2.5E-06 8.5E-11 62.0 5.5 40 9-48 50-90 (99)
370 2xnq_A Nuclear polyadenylated 98.2 2E-06 6.9E-11 62.4 4.9 39 9-47 56-95 (97)
371 2bz2_A Negative elongation fac 98.1 2.2E-06 7.5E-11 64.9 5.0 41 8-48 71-112 (121)
372 2la4_A Nuclear and cytoplasmic 98.1 1.2E-06 4E-11 64.0 3.1 38 8-45 61-99 (101)
373 2l9w_A U4/U6 snRNA-associated- 98.1 1.3E-05 4.6E-10 58.1 8.0 70 62-137 20-96 (117)
374 1x4g_A Nucleolysin TIAR; struc 98.1 4E-06 1.4E-10 62.0 5.3 40 10-49 61-101 (109)
375 2dgu_A Heterogeneous nuclear r 98.1 6.4E-06 2.2E-10 60.2 6.3 40 10-49 45-85 (103)
376 1why_A Hypothetical protein ri 98.1 3.3E-06 1.1E-10 61.1 4.7 38 10-47 53-93 (97)
377 1sjq_A Polypyrimidine tract-bi 98.1 2.3E-06 7.9E-11 62.9 3.8 40 9-48 51-93 (105)
378 1x4d_A Matrin 3; structural ge 98.1 2.8E-06 9.5E-11 62.2 4.2 40 9-48 51-93 (102)
379 2jvo_A Nucleolar protein 3; nu 98.1 2.9E-06 1E-10 62.8 4.2 39 10-48 65-104 (108)
380 1wf1_A RNA-binding protein RAL 98.1 2.3E-06 7.8E-11 63.5 3.7 40 9-48 61-101 (110)
381 1wex_A Hypothetical protein (r 98.1 3.9E-06 1.3E-10 61.7 4.9 41 9-49 50-93 (104)
382 1whx_A Hypothetical protein ri 98.1 3E-06 1E-10 63.1 4.2 39 8-46 44-83 (111)
383 3s6e_A RNA-binding protein 39; 98.1 2.8E-06 9.5E-11 63.6 4.0 38 9-46 54-92 (114)
384 2ytc_A PRE-mRNA-splicing facto 98.1 3.3E-06 1.1E-10 59.3 4.2 36 9-44 47-84 (85)
385 2dnp_A RNA-binding protein 14; 98.1 5.9E-06 2E-10 58.8 5.5 39 10-48 43-82 (90)
386 2kvi_A Nuclear polyadenylated 98.0 2.4E-06 8.3E-11 61.7 3.4 40 9-48 44-84 (96)
387 2dgt_A RNA-binding protein 30; 98.0 5.8E-06 2E-10 59.1 5.3 40 10-49 44-84 (92)
388 2d9o_A DNAJ (HSP40) homolog, s 98.0 8.1E-06 2.8E-10 59.5 5.8 41 7-48 51-91 (100)
389 1x4f_A Matrin 3; structural ge 98.0 5E-06 1.7E-10 61.9 4.6 41 8-48 60-103 (112)
390 1u6p_A GAG polyprotein; MLV, A 98.0 2.9E-06 1E-10 54.2 2.8 25 208-232 21-45 (56)
391 1sjr_A Polypyrimidine tract-bi 98.0 6.3E-06 2.2E-10 65.4 5.1 41 8-48 82-125 (164)
392 1nc8_A Nucleocapsid protein; H 98.0 2.2E-06 7.5E-11 47.3 1.7 22 210-231 6-27 (29)
393 2cq1_A PTB-like protein L; RRM 98.0 1E-05 3.5E-10 59.1 5.7 40 10-49 51-93 (101)
394 2ad9_A Polypyrimidine tract-bi 98.0 7.3E-06 2.5E-10 61.7 5.0 41 9-49 66-109 (119)
395 1x4c_A Splicing factor, argini 98.0 1E-05 3.5E-10 59.7 5.8 39 11-49 51-95 (108)
396 2cq2_A Hypothetical protein LO 98.0 6.5E-06 2.2E-10 61.4 4.5 38 9-46 62-105 (114)
397 3zzy_A Polypyrimidine tract-bi 97.9 1.2E-05 4.1E-10 61.3 4.7 40 9-48 64-107 (130)
398 2e44_A Insulin-like growth fac 97.9 1.3E-05 4.5E-10 57.6 4.7 37 11-47 55-92 (96)
399 2dhx_A Poly (ADP-ribose) polym 97.8 0.00023 7.9E-09 51.1 9.6 73 63-143 8-86 (104)
400 3beg_B Splicing factor, argini 97.8 2.5E-05 8.5E-10 58.4 4.5 37 11-47 52-94 (115)
401 2e5i_A Heterogeneous nuclear r 97.7 3.2E-05 1.1E-09 58.6 5.1 38 11-48 62-103 (124)
402 2ysa_A Retinoblastoma-binding 97.6 1.5E-05 5E-10 50.7 1.2 21 210-230 7-27 (55)
403 2dnr_A Synaptojanin-1; RRM dom 97.6 6.3E-05 2.2E-09 53.1 4.4 37 12-48 51-87 (91)
404 3d2w_A TAR DNA-binding protein 97.4 0.00017 5.9E-09 51.1 4.4 36 9-47 47-84 (89)
405 1ufw_A Synaptojanin 2; RNP dom 97.3 0.00018 6.1E-09 51.0 3.4 32 13-44 61-92 (95)
406 1wey_A Calcipressin 1; structu 97.3 0.0015 5.1E-08 47.1 8.2 74 63-142 5-85 (104)
407 1wf0_A TDP-43, TAR DNA-binding 97.2 0.00015 5E-09 51.1 2.7 39 9-48 41-79 (88)
408 3tht_A Alkylated DNA repair pr 96.9 0.0013 4.3E-08 58.6 6.2 37 9-45 55-97 (345)
409 1uw4_A UPF3X; nonsense mediate 96.8 0.0079 2.7E-07 42.5 8.3 76 64-139 2-86 (91)
410 1wwh_A Nucleoporin 35, nucleop 96.6 0.01 3.5E-07 43.9 8.1 71 62-139 23-95 (119)
411 2l08_A Regulator of nonsense t 96.2 0.018 6.1E-07 41.0 6.9 77 63-139 9-94 (97)
412 3u1l_A PRE-mRNA-splicing facto 96.0 0.0042 1.4E-07 52.3 3.7 27 8-34 177-204 (240)
413 1whv_A Poly(A)-specific ribonu 95.8 0.035 1.2E-06 39.3 7.0 50 64-122 17-67 (100)
414 2dhx_A Poly (ADP-ribose) polym 95.8 0.011 3.8E-07 42.4 4.4 52 11-76 48-99 (104)
415 3ctr_A Poly(A)-specific ribonu 94.9 0.047 1.6E-06 38.8 5.2 49 65-122 8-57 (101)
416 3p3d_A Nucleoporin 53; structu 94.9 0.037 1.2E-06 41.6 4.9 75 64-139 8-97 (132)
417 2l9w_A U4/U6 snRNA-associated- 94.8 0.024 8.1E-07 41.1 3.6 32 12-43 64-96 (117)
418 2i2y_A Fusion protein consists 94.4 0.026 9E-07 43.6 3.3 21 9-29 109-129 (150)
419 3pq1_A Poly(A) RNA polymerase; 91.8 0.11 3.6E-06 48.0 3.5 59 63-127 53-112 (464)
420 1owx_A Lupus LA protein, SS-B, 89.7 0.43 1.5E-05 35.4 4.6 33 12-44 57-93 (121)
421 3p3d_A Nucleoporin 53; structu 87.2 0.65 2.2E-05 34.8 4.1 37 11-47 63-99 (132)
422 1wey_A Calcipressin 1; structu 79.8 2 6.8E-05 30.8 3.9 35 12-46 48-83 (104)
423 1wwh_A Nucleoporin 35, nucleop 75.7 3.4 0.00012 30.3 4.3 35 11-45 60-95 (119)
424 2hqh_E Restin; beta/BETA struc 74.8 0.83 2.9E-05 23.6 0.5 18 279-296 5-22 (26)
425 2g0c_A ATP-dependent RNA helic 73.0 4.9 0.00017 26.6 4.3 66 65-139 2-75 (76)
426 3d45_A Poly(A)-specific ribonu 65.4 17 0.00058 33.8 7.6 52 64-124 441-494 (507)
427 2k1p_A Zinc finger RAN-binding 48.8 9.4 0.00032 20.9 1.7 12 208-219 18-29 (33)
428 4eyt_A Telomerase associated p 48.6 53 0.0018 22.5 5.8 51 63-121 12-63 (129)
429 3alr_A Nanos protein; zinc-fin 40.1 18 0.00061 25.6 2.4 20 278-297 72-94 (106)
430 2pzo_E CAP-Gly domain-containi 38.6 8.7 0.0003 22.2 0.5 20 277-296 20-39 (42)
431 2cu1_A Mitogen-activated prote 34.5 61 0.0021 22.7 4.4 68 67-143 20-90 (103)
432 2lk0_A RNA-binding protein 5; 34.3 6.2 0.00021 21.5 -0.6 13 208-220 17-29 (32)
433 3zzp_A TS9, ribosomal protein 33.8 94 0.0032 20.5 5.2 57 12-86 7-67 (77)
434 1n0z_A ZNF265; zinc finger, RN 31.7 27 0.00092 20.6 2.0 12 208-219 28-39 (45)
435 3j21_T 50S ribosomal protein L 31.1 96 0.0033 21.1 5.0 53 66-121 25-80 (86)
436 1ef4_A Subunit N, DNA-directed 24.2 21 0.00073 22.1 0.5 9 211-219 4-12 (55)
437 2i9x_A Putative septation prot 23.4 1.2E+02 0.004 20.7 4.3 26 88-113 5-30 (87)
438 1vq8_S 50S ribosomal protein L 23.0 1.6E+02 0.0053 19.9 4.8 52 66-120 24-78 (85)
439 2v94_A RPS24, 30S ribosomal pr 22.7 2.1E+02 0.0071 20.3 5.6 47 73-120 37-89 (107)
440 2g1d_A 30S ribosomal protein S 22.5 31 0.0011 24.2 1.2 19 6-25 62-80 (98)
441 3lpe_A Putative transcription 21.9 1.8E+02 0.0062 19.7 5.2 34 88-126 39-73 (92)
442 3e2u_E CAP-Gly domain-containi 21.3 21 0.0007 20.7 0.1 20 210-229 20-39 (42)
443 2npt_B Mitogen-activated prote 20.6 2.2E+02 0.0075 19.7 5.1 63 67-137 32-96 (100)
444 2ia9_A Putative septation prot 20.4 1.4E+02 0.0048 20.9 4.3 26 88-113 5-30 (100)
445 2jrh_A Mitogen-activated prote 20.0 1.8E+02 0.0063 19.8 4.5 66 68-141 17-84 (94)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.93 E-value=4.6e-25 Score=183.63 Aligned_cols=139 Identities=22% Similarity=0.363 Sum_probs=116.4
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHHHH
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLK 81 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l~ 81 (311)
+++.+|+++|||||+|.+.++|.+||++++..|.|+.|.|..+....... .+....+..+|||+|||+++++++|+
T Consensus 47 ~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~~~~~~~----~~~~~~~~~~l~V~nLp~~~t~~~l~ 122 (196)
T 1l3k_A 47 RDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQ----RPGAHLTVKKIFVGGIKEDTEEHHLR 122 (196)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECCC---------------CCSEEEEECCTTTCCHHHHH
T ss_pred EcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecccCccccc----ccccCCCcceEEEeCCCCCCCHHHHH
Confidence 56789999999999999999999999999999999999999876543321 12223456899999999999999999
Q ss_pred hhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcCCCCCC
Q 021488 82 KLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPKKG 144 (311)
Q Consensus 82 ~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~~~~~~ 144 (311)
++|+. |.|..+.|+.++.++.++|||||+|.+.++|.+|+..++..|+|+.|.|.++.++...
T Consensus 123 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 123 DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC-----
T ss_pred HHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecCChhHh
Confidence 99999 9999999999998999999999999999999999966899999999999999987764
No 2
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.92 E-value=8.3e-25 Score=182.35 Aligned_cols=140 Identities=19% Similarity=0.320 Sum_probs=120.3
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccccccCCC----------CCCCCcCCCCEEEEcCCCC
Q 021488 4 PDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSD----------FTPKIVEGYNRIYIGNLSW 73 (311)
Q Consensus 4 ~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~~~~~~~----------~~~~~~~~~~~l~V~~L~~ 73 (311)
..+++++|||||+|.+.++|++||+|++..|.|++|.|..+.......... .......+..+|||+|||+
T Consensus 45 ~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 124 (198)
T 2yh0_A 45 VQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPN 124 (198)
T ss_dssp EEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCT
T ss_pred eEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCC
Confidence 346789999999999999999999999999999999998765542211100 1111234668999999999
Q ss_pred CCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCCCC
Q 021488 74 DITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPPKK 143 (311)
Q Consensus 74 ~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~~~ 143 (311)
.+++++|+++|++ |.|..+.++.++.++.++|||||+|.+.++|.+|+ .|++..|+|+.|+|.++.++..
T Consensus 125 ~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 125 YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp TCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999 99999999999889999999999999999999999 7999999999999999988654
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.92 E-value=4.4e-24 Score=172.64 Aligned_cols=128 Identities=22% Similarity=0.371 Sum_probs=115.1
Q ss_pred CCCCCccceEEEEeCCHHHHHHHH-HcCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHHHHh
Q 021488 4 PDTGKFRGIAIINFRTEGAVKRAL-ALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKK 82 (311)
Q Consensus 4 ~~tg~skG~afV~F~~~~~A~~Al-~l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l~~ 82 (311)
..+|+++|||||+|.+.++|.+|+ .+++..+.|+.|.|..+..... ....+..+|||+|||..+++++|++
T Consensus 35 ~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~--------~~~~~~~~l~v~nl~~~~t~~~l~~ 106 (166)
T 3md3_A 35 DKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ--------SSSDDTFNLFVGDLNVNVDDETLRN 106 (166)
T ss_dssp CCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC--------CCCTTCEEEEEESCCTTCCHHHHHH
T ss_pred CCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC--------CCCCCCceEEECCCCCCCCHHHHHH
Confidence 346889999999999999999999 5999999999999997754432 1233567999999999999999999
Q ss_pred hccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcC
Q 021488 83 LFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 83 ~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~ 139 (311)
+|++ |.|..+.++.++.++.++|||||+|.+.++|.+|+ .|++..|+|+.|+|.|+.
T Consensus 107 ~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 107 AFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999 99999999999999999999999999999999999 799999999999999975
No 4
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.92 E-value=8.7e-25 Score=178.82 Aligned_cols=129 Identities=25% Similarity=0.390 Sum_probs=113.5
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHHH
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDL 80 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l 80 (311)
|++..+|+++|||||+|.+.++|.+||+|++..|.|++|.|..+...... ...+..+|||+|||.++++++|
T Consensus 45 ~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~~~~~~~--------~~~~~~~l~v~nlp~~~t~~~l 116 (175)
T 1fje_B 45 VVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSK--------KVRAARTLLAKNLSFNITEDEL 116 (175)
T ss_dssp CCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECCCCSSCS--------TTGGGGEEEEESCCSSCCHHHH
T ss_pred EEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecCCCcccc--------ccccCCEEEEeCCCCCCCHHHH
Confidence 45677899999999999999999999999999999999999977654321 1235579999999999999999
Q ss_pred HhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCCC
Q 021488 81 KKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPPK 142 (311)
Q Consensus 81 ~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~~ 142 (311)
+++|++ |.|..+ ..++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.+++
T Consensus 117 ~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 117 KEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp HHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred HHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 999999 877665 457889999999999999999999 699999999999999998764
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.92 E-value=1.3e-24 Score=183.58 Aligned_cols=144 Identities=22% Similarity=0.370 Sum_probs=119.7
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccccCC-CCCCCCcCCCCEEEEcCCCCCCCHH
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTS-DFTPKIVEGYNRIYIGNLSWDITEE 78 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~~~~-~~~~~~~~~~~~l~V~~L~~~~t~~ 78 (311)
++|+.+|+++|||||+|.+.++|.+||+ |++..|.|+.|.|..+......... ...........+|||+|||.+++++
T Consensus 61 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~ 140 (216)
T 2qfj_A 61 SWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDD 140 (216)
T ss_dssp CCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHH
T ss_pred eecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHH
Confidence 3567799999999999999999999997 9999999999999865443221100 0000112355799999999999999
Q ss_pred HHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCCCCC
Q 021488 79 DLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPPKKG 144 (311)
Q Consensus 79 ~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~~~~ 144 (311)
+|+++|++ |.|..+.|+.++.++.++|||||+|.+.++|.+|+ .|++..|+|+.|+|.++.+++..
T Consensus 141 ~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 141 DIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred HHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 99999999 99999999999989999999999999999999999 79999999999999999887653
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.92 E-value=3.9e-24 Score=173.49 Aligned_cols=127 Identities=25% Similarity=0.356 Sum_probs=115.7
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHHH
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDL 80 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l 80 (311)
+++.+|+++|||||+|.+.++|.+|++ |++..+.|++|.|..+.+... ..+..+|||+|||..+++++|
T Consensus 37 ~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~----------~~~~~~l~v~nl~~~~t~~~l 106 (168)
T 1b7f_A 37 RDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGE----------SIKDTNLYVTNLPRTITDDQL 106 (168)
T ss_dssp EETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSS----------TTTTCEEEEESCCTTCCHHHH
T ss_pred EeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcc----------cCCCCCEEEeCCCCCCCHHHH
Confidence 466799999999999999999999996 999999999999997764432 224579999999999999999
Q ss_pred HhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCC--eEeEEEEc
Q 021488 81 KKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRG--RPVKISCA 138 (311)
Q Consensus 81 ~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g--~~i~v~~a 138 (311)
+++|++ |.|..+.++.+..++.++|||||+|.+.++|.+|+ .|++..+.| ++|+|.+|
T Consensus 107 ~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 107 DTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999 99999999999989999999999999999999999 799999977 99999985
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.91 E-value=7.5e-25 Score=177.66 Aligned_cols=131 Identities=20% Similarity=0.390 Sum_probs=116.9
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHHH
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDL 80 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l 80 (311)
++++.+|+++|||||+|.+.++|.+||+ ++..|.|+.|.|..+...... .+..+|||+|||+++++++|
T Consensus 36 ~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~~~~~----------~~~~~l~V~nlp~~~t~~~l 104 (167)
T 2cjk_A 36 MKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIPRDEQ----------DKTGKIFVGGIGPDVRPKEF 104 (167)
T ss_dssp CCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCCHHHH----------HHCEEEEEEEECTTCCHHHH
T ss_pred EECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccchhhc----------cCCCeEEECCCCCCCCHHHH
Confidence 3567899999999999999999999997 367889999988876544321 23468999999999999999
Q ss_pred HhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcCCCC
Q 021488 81 KKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPK 142 (311)
Q Consensus 81 ~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~~~~ 142 (311)
+++|++ |.|..+.++.++.++.++|||||+|.+.++|.+|+++++..|+|+.|+|.++.+++
T Consensus 105 ~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~pk~ 167 (167)
T 2cjk_A 105 EEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPRH 167 (167)
T ss_dssp HHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCCCC
T ss_pred HHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCCCC
Confidence 999999 99999999999889999999999999999999999999999999999999998863
No 8
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.91 E-value=3.4e-24 Score=181.23 Aligned_cols=132 Identities=23% Similarity=0.280 Sum_probs=115.9
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHH
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEED 79 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~ 79 (311)
|+|+.||+++|||||+|.+.++|.+||+ +++..+.|+.|+|..+....... .....+|||+|||+++++++
T Consensus 48 ~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~--------~~~~~~l~v~nl~~~~t~~~ 119 (213)
T 4f02_A 48 CRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR--------KSGVGNIFIKNLDKSIDNKA 119 (213)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH--------HHCTTEEEEESCCTTCCHHH
T ss_pred ecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccc--------ccccccceECCcccccHHHH
Confidence 3578899999999999999999999995 99999999999998765443221 12346899999999999999
Q ss_pred HHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCCC
Q 021488 80 LKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPPK 142 (311)
Q Consensus 80 l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~~ 142 (311)
|+++|++ |.|..+.|+.+. +.++|||||+|.+.++|.+|| .|++..|+|+.|+|.++.++.
T Consensus 120 l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 120 LYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp HHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred HHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 9999999 999999999885 457999999999999999999 799999999999999987653
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.91 E-value=2.8e-24 Score=175.14 Aligned_cols=124 Identities=21% Similarity=0.393 Sum_probs=112.9
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHHHHhhc
Q 021488 5 DTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLF 84 (311)
Q Consensus 5 ~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l~~~f 84 (311)
.+++++|||||+|.+.++|.+||++++..|.|++|.|..+..... .....+|||+|||.++++++|+++|
T Consensus 46 ~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~----------~~~~~~l~v~nlp~~~t~~~l~~~f 115 (172)
T 2g4b_A 46 QINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQP----------LPGAHKLFIGGLPNYLNDDQVKELL 115 (172)
T ss_dssp EEETTTTEEEEEESSHHHHHHHGGGTTCEETTEECEEECCSSCCC----------CTTTTCEEEECCCTTCCHHHHHHHH
T ss_pred EecCCCCEEEEEeCCHHHHHHHHHhCCcEecCceeeecCCcccCC----------CCCCCEEEEEcCCCcCCHHHHHHHH
Confidence 457889999999999999999999999999999999986543321 1235789999999999999999999
Q ss_pred cC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 85 SD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 85 ~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
++ |.|..+.++.++.++.++|||||+|.+.++|.+|+ .|++..|+|+.|.|.+|
T Consensus 116 ~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 116 TSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99 99999999999889999999999999999999999 79999999999999997
No 10
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.91 E-value=8.2e-24 Score=171.21 Aligned_cols=127 Identities=21% Similarity=0.352 Sum_probs=114.4
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHHH
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDL 80 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l 80 (311)
+++.+|+++|||||+|.+.++|.+|++ |++..+.|++|.|..+.+.... ....+|||+|||..+++++|
T Consensus 36 ~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~----------~~~~~l~v~nl~~~~t~~~l 105 (167)
T 1fxl_A 36 RDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS----------IRDANLYVSGLPKTMTQKEL 105 (167)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGG----------GTTCEEEEESCCTTCCHHHH
T ss_pred eCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCccc----------CCCCcEEECCCCCcCCHHHH
Confidence 466799999999999999999999996 9999999999999977654321 24578999999999999999
Q ss_pred HhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeE--eEEEEc
Q 021488 81 KKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRP--VKISCA 138 (311)
Q Consensus 81 ~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~--i~v~~a 138 (311)
+++|++ |.|..+.++.+..++.++|||||+|.+.++|.+|+ .|++..+.|+. |+|.||
T Consensus 106 ~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 106 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999 99999999999889999999999999999999999 79999999965 888775
No 11
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.89 E-value=2.7e-22 Score=176.76 Aligned_cols=134 Identities=15% Similarity=0.207 Sum_probs=119.8
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHH-HcCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCC-CHHH
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRAL-ALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDI-TEED 79 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al-~l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~-t~~~ 79 (311)
+++.+|+++|||||+|.+.++|.+|+ .|++..|.|++|.|..+...... .......+|||+|||+++ ++++
T Consensus 129 ~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~-------~~~~~~~~l~v~nlp~~~~~~~~ 201 (284)
T 3smz_A 129 YSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT-------PALLHSRCLCVDRLPPGFNDVDA 201 (284)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC-------TTTTSCSEEEEECCCTTCCCHHH
T ss_pred eeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC-------cccCCccEEEEecCCcccCCHHH
Confidence 46789999999999999999999999 59999999999999987655432 122356799999999995 9999
Q ss_pred HHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCCCC
Q 021488 80 LKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPPKK 143 (311)
Q Consensus 80 l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~~~ 143 (311)
|+++|+. |.|..+.|+.+. ++.++|+|||+|.+.++|.+|+ .|++..|.|+.|+|.++.++..
T Consensus 202 l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 202 LCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 9999999 999999999987 7899999999999999999999 7999999999999999987664
No 12
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.89 E-value=1.6e-22 Score=162.77 Aligned_cols=137 Identities=17% Similarity=0.258 Sum_probs=106.7
Q ss_pred CCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccc---cCCCCCCCCcCCCCEEEEcCCCCCCCHHHHHh
Q 021488 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAK---RTSDFTPKIVEGYNRIYIGNLSWDITEEDLKK 82 (311)
Q Consensus 7 g~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~---~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l~~ 82 (311)
.+++|||||+|.+.++|++|++ +++.......+.+......... ..............+|||+|||+++++++|++
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 89 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRR 89 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 4799999999999999999995 5543333222233211111000 00111222234567999999999999999999
Q ss_pred hccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCCCC
Q 021488 83 LFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPPKK 143 (311)
Q Consensus 83 ~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~~~ 143 (311)
+|+. |.|..+.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.++..
T Consensus 90 ~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 90 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999 99999999999989999999999999999999999 7999999999999999987654
No 13
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.88 E-value=3e-22 Score=177.15 Aligned_cols=135 Identities=18% Similarity=0.235 Sum_probs=111.4
Q ss_pred CCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCC-CCHHHHHh
Q 021488 5 DTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWD-ITEEDLKK 82 (311)
Q Consensus 5 ~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~-~t~~~l~~ 82 (311)
.+|+++|||||+|.+.++|.+|++ |++..|.|++|.|..+.+....... .....+..+|||+|||++ +++++|++
T Consensus 154 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~---~~~~~~~~~l~v~nlp~~~~t~~~l~~ 230 (292)
T 2ghp_A 154 RFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT---DSATLEGREIMIRNLSTELLDENLLRE 230 (292)
T ss_dssp -----CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC------------CCTTTEEEEEEECTTTCCHHHHHH
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc---cccCCCCceEEEECCCcccCCHHHHHH
Confidence 448899999999999999999997 9999999999999987655432211 123345689999999999 99999999
Q ss_pred hccC-CceeEEEEeecCC-CCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcCCCC
Q 021488 83 LFSD-CKISSLRFGTNKE-TGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPK 142 (311)
Q Consensus 83 ~f~~-g~i~~i~v~~~~~-~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~~~~ 142 (311)
+|+. |.|..+.|+.+.. ++.++|||||+|.+.++|.+|+.|++..|.|+.|.|.|+.+++
T Consensus 231 ~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 231 SFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp HHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGGGTTEEETTEEEEEEECCCCC
T ss_pred HHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHHHhcCCEECCcEEEEEEecCCC
Confidence 9999 9999999999876 5899999999999999999999999999999999999998864
No 14
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.88 E-value=4.1e-22 Score=162.51 Aligned_cols=128 Identities=22% Similarity=0.299 Sum_probs=109.3
Q ss_pred ccCCCC--CccceEEEEeCCHHHHHHHHH-cCCCCcC---CeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCC
Q 021488 2 TFPDTG--KFRGIAIINFRTEGAVKRALA-LDGSEMD---GLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDI 75 (311)
Q Consensus 2 ~d~~tg--~skG~afV~F~~~~~A~~Al~-l~g~~~~---g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~ 75 (311)
+++.+| +++|||||+|.+.++|.+|++ |++..+. ++.+.+.+....... .....+|||+|||+++
T Consensus 37 ~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~v~nl~~~~ 107 (175)
T 3nmr_A 37 RDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN---------AVEDRKLFIGMISKKC 107 (175)
T ss_dssp EECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCS---------CGGGSEEEEESCCTTC
T ss_pred ecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccc---------cCCCCeEEEcCCCCcC
Confidence 355565 899999999999999999996 9998876 677888766544321 2245799999999999
Q ss_pred CHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeC---CeEeEEEEcC
Q 021488 76 TEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVR---GRPVKISCAV 139 (311)
Q Consensus 76 t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~---g~~i~v~~a~ 139 (311)
++++|+++|++ |.|..+.++.++ ++.++|||||+|.+.++|.+|+ .|++..+. +++|+|.||.
T Consensus 108 t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 108 TENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999 999999999986 6889999999999999999999 89998776 4999999973
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.87 E-value=3e-21 Score=169.81 Aligned_cols=130 Identities=21% Similarity=0.236 Sum_probs=108.7
Q ss_pred CCCCccceEEEEeCCHHHHHHHH-HcCCCCcCCeeEEEEECcccccccC---CC--------------------------
Q 021488 5 DTGKFRGIAIINFRTEGAVKRAL-ALDGSEMDGLFLKIQPYKATKAKRT---SD-------------------------- 54 (311)
Q Consensus 5 ~tg~skG~afV~F~~~~~A~~Al-~l~g~~~~g~~i~V~~~~~~~~~~~---~~-------------------------- 54 (311)
.+|+++|||||+|.+.++|.+|| .||+..|.|+.|+|..+........ ..
T Consensus 47 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (282)
T 3pgw_A 47 RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQ 126 (282)
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhcc
Confidence 48999999999999999999999 5999999999999987654331000 00
Q ss_pred ------------------------------------------------------------------------CCCCCcCC
Q 021488 55 ------------------------------------------------------------------------FTPKIVEG 62 (311)
Q Consensus 55 ------------------------------------------------------------------------~~~~~~~~ 62 (311)
.......+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (282)
T 3pgw_A 127 GGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPP 206 (282)
T ss_pred CcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCC
Confidence 00012234
Q ss_pred CCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeC-CeEeEEEEcC
Q 021488 63 YNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVR-GRPVKISCAV 139 (311)
Q Consensus 63 ~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~-g~~i~v~~a~ 139 (311)
.++|||+|||..+++++|+++|++ |.|.++.|+.++ +|||||+|.+.++|.+|+ .|++..|. |+.|+|.|++
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 578999999999999999999999 999999998664 689999999999999999 79999999 9999999975
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.86 E-value=8.9e-21 Score=166.98 Aligned_cols=121 Identities=16% Similarity=0.218 Sum_probs=112.2
Q ss_pred CCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHHHHhhcc
Q 021488 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFS 85 (311)
Q Consensus 7 g~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l~~~f~ 85 (311)
++++|||||+|.+.++|.+|++ |++..|.|++|.|.... ...+|||+|||+++++++|+++|+
T Consensus 54 ~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~----------------~~~~l~v~nlp~~~t~~~l~~~f~ 117 (284)
T 3smz_A 54 DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP----------------TDALLCVANLPPSLTQQQFEELVR 117 (284)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----------------CSCEEEEESCCTTCCHHHHHHHHG
T ss_pred ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----------------CCCEEEEcCCCCcCCHHHHHHHHH
Confidence 6789999999999999999995 99999999999998632 236899999999999999999999
Q ss_pred C-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCCCC
Q 021488 86 D-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPPKK 143 (311)
Q Consensus 86 ~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~~~ 143 (311)
. |.|..+.++.++.++.++|||||+|.+.++|.+|+ .+++..|.|+.|.|.++.++..
T Consensus 118 ~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 118 PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC
T ss_pred hcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 9 99999999999999999999999999999999999 8999999999999999877543
No 17
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.85 E-value=4.6e-21 Score=160.79 Aligned_cols=128 Identities=18% Similarity=0.210 Sum_probs=103.3
Q ss_pred ccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccccCC--------------------CCC-------CCCc
Q 021488 9 FRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTS--------------------DFT-------PKIV 60 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~~~~--------------------~~~-------~~~~ 60 (311)
++|||||+|.+.++|++||+ |||..|.|++|.|..++.....+.. ... ....
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 120 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ 120 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccC
Confidence 58999999999999999996 9999999999999987643211100 000 0012
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-Cce--eEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCe----E
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKI--SSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGR----P 132 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i--~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~----~ 132 (311)
.+..+|||+|||+++++++|+++|++ |.| ..+.++.+. +.++|+|||+|.+.++|.+|| .||+..|.+. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 45678999999999999999999999 988 899988774 455799999999999999999 8999999886 4
Q ss_pred eEEEEc
Q 021488 133 VKISCA 138 (311)
Q Consensus 133 i~v~~a 138 (311)
+.|.++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 666654
No 18
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=4.4e-21 Score=153.06 Aligned_cols=131 Identities=18% Similarity=0.256 Sum_probs=110.3
Q ss_pred CCCccceEEEEeCCHHHHHHHHH-c-CCCCcCCeeEEEEECcccccccC------CCCCCCCcCCCCEEEEcCCCCCCCH
Q 021488 6 TGKFRGIAIINFRTEGAVKRALA-L-DGSEMDGLFLKIQPYKATKAKRT------SDFTPKIVEGYNRIYIGNLSWDITE 77 (311)
Q Consensus 6 tg~skG~afV~F~~~~~A~~Al~-l-~g~~~~g~~i~V~~~~~~~~~~~------~~~~~~~~~~~~~l~V~~L~~~~t~ 77 (311)
..+.+|+++|+|.+.++|++|++ + |+..+.| .|.+..+........ .........+.++|||+|||+++++
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 34678999999999999999995 8 9999999 999986554321111 1122334456789999999999999
Q ss_pred HHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCCC
Q 021488 78 EDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPPK 142 (311)
Q Consensus 78 ~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~~ 142 (311)
++|+++|++ |.|.++.|+.+ ++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.+++
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999 99999999876 4899999999999999999 699999999999999988764
No 19
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.84 E-value=3.2e-20 Score=158.49 Aligned_cols=127 Identities=20% Similarity=0.301 Sum_probs=105.6
Q ss_pred cceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccccCC------------------CCC-------CCCcCCC
Q 021488 10 RGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTS------------------DFT-------PKIVEGY 63 (311)
Q Consensus 10 kG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~~~~------------------~~~-------~~~~~~~ 63 (311)
+|||||+|.+.++|++||+ |++..|.|++|.|..+......... ... .....+.
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 151 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCC
Confidence 7999999999999999996 9999999999999877643211000 000 0112346
Q ss_pred CEEEEcCCCCCCCHHHHHhhccC-C-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeC-CeEeEEEEcC
Q 021488 64 NRIYIGNLSWDITEEDLKKLFSD-C-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVR-GRPVKISCAV 139 (311)
Q Consensus 64 ~~l~V~~L~~~~t~~~l~~~f~~-g-~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~-g~~i~v~~a~ 139 (311)
.+|||+|||..+++++|+++|++ | .|..+.++.. .+|||||+|.+.++|.+|+ .|++..|. |+.|+|.|+.
T Consensus 152 ~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 152 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp SEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 89999999999999999999999 9 9999999653 2789999999999999999 79999999 9999999987
Q ss_pred CC
Q 021488 140 PP 141 (311)
Q Consensus 140 ~~ 141 (311)
++
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 20
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.83 E-value=2e-20 Score=155.96 Aligned_cols=127 Identities=20% Similarity=0.308 Sum_probs=106.3
Q ss_pred cceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccccCC------------------CC-------CCCCcCCC
Q 021488 10 RGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTS------------------DF-------TPKIVEGY 63 (311)
Q Consensus 10 kG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~~~~------------------~~-------~~~~~~~~ 63 (311)
+|||||+|.+.++|.+||+ |++..|.|++|.|..+......... .. ......+.
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 120 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPS 120 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCc
Confidence 7999999999999999996 9999999999999877644211100 00 00112357
Q ss_pred CEEEEcCCCCCCCHHHHHhhccC-C-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeC-CeEeEEEEcC
Q 021488 64 NRIYIGNLSWDITEEDLKKLFSD-C-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVR-GRPVKISCAV 139 (311)
Q Consensus 64 ~~l~V~~L~~~~t~~~l~~~f~~-g-~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~-g~~i~v~~a~ 139 (311)
.+|||+|||..+++++|+++|++ | .|..+.++.+. +|+|||+|.+.++|.+|+ .|++..++ |+.|+|.|+.
T Consensus 121 ~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 121 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 89999999999999999999999 9 99999997643 789999999999999999 79999999 9999999987
Q ss_pred CC
Q 021488 140 PP 141 (311)
Q Consensus 140 ~~ 141 (311)
++
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 21
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.83 E-value=3.3e-20 Score=164.02 Aligned_cols=118 Identities=15% Similarity=0.175 Sum_probs=102.3
Q ss_pred ccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHHHHhhccC-C
Q 021488 9 FRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFSD-C 87 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g 87 (311)
++|||||+|.+.++|.+||++++..|.|++|.|.++ ...+|||+|||+.+++++|+++|+. |
T Consensus 80 ~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~~-----------------~~~~l~v~nlp~~~t~~~l~~~f~~~G 142 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAITKTHKVVGQNEIIVSHL-----------------TECTLWMTNFPPSYTQRNIRDLLQDIN 142 (292)
T ss_dssp SSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEEC-----------------CSCEEEEECCCTTCCHHHHHHHHHHTT
T ss_pred CcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEEC-----------------CCCEEEEECCCCCCCHHHHHHHHHHhC
Confidence 589999999999999999999999999999999864 2469999999999999999999999 9
Q ss_pred -ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCCCCC
Q 021488 88 -KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPPKKG 144 (311)
Q Consensus 88 -~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~~~~ 144 (311)
.|..+.++.++. +.++|||||+|.+.++|.+|+ .|++..|.|+.|.|.++.++...
T Consensus 143 ~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 143 VVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp CCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---
T ss_pred CCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 999999998874 778999999999999999999 69999999999999999876543
No 22
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.83 E-value=5.1e-20 Score=160.30 Aligned_cols=120 Identities=23% Similarity=0.262 Sum_probs=107.5
Q ss_pred CCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHHHHhhcc
Q 021488 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFS 85 (311)
Q Consensus 7 g~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l~~~f~ 85 (311)
++++|||||+|.+.++|.+||+ +++..|.|+.|.|..+.. ..+|||+|||+.+|+++|+++|+
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~----------------~~~l~v~nl~~~~t~~~l~~~F~ 118 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH----------------GAALTVKNLSPVVSNELLEQAFS 118 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC----------------SSEEEEESCCTTCCHHHHHHHHG
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc----------------CCcccccCCCCCCCHHHHHHHHH
Confidence 4678999999999999999996 999999999999997642 36899999999999999999999
Q ss_pred C-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hc-CCceeC---CeEeEEEEcCCCCC
Q 021488 86 D-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KL-DQEVVR---GRPVKISCAVPPKK 143 (311)
Q Consensus 86 ~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l-~~~~i~---g~~i~v~~a~~~~~ 143 (311)
. |.|..+.|+.+ .++.++|||||+|.+.++|.+|+ .| ++..+. ++.|.|.++.+...
T Consensus 119 ~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~~ 181 (261)
T 3sde_A 119 QFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFDD 181 (261)
T ss_dssp GGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEES
T ss_pred hcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccCc
Confidence 9 99999999999 48999999999999999999999 78 455554 89999999887644
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=6.2e-19 Score=130.36 Aligned_cols=79 Identities=23% Similarity=0.418 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~ 139 (311)
..++|||+|||+++|+++|+++|++ |.|.++.|++++.++.++|||||+|.++++|.+|+ .|++..|.|+.|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 3468999999999999999999999 99999999999999999999999999999999999 799999999999999986
Q ss_pred C
Q 021488 140 P 140 (311)
Q Consensus 140 ~ 140 (311)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 24
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=3.5e-19 Score=139.32 Aligned_cols=122 Identities=20% Similarity=0.301 Sum_probs=80.7
Q ss_pred ceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHHHHhhccC-Cc
Q 021488 11 GIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFSD-CK 88 (311)
Q Consensus 11 G~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~ 88 (311)
-++|++|++...+..||+ +++....|+.- +. ....+....+.++|||+|||+++++++|+++|++ |.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~----------~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~ 73 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MS----------YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGR 73 (135)
T ss_dssp -------------------------------CC----------SCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CC----------cCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 478889999999999996 77776665431 11 1112233445689999999999999999999999 99
Q ss_pred eeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCCCC
Q 021488 89 ISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPPKK 143 (311)
Q Consensus 89 i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~~~ 143 (311)
|..|.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.+...
T Consensus 74 i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 74 VGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred EEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 999999999889999999999999999999999 7999999999999999987655
No 25
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=5.8e-19 Score=128.47 Aligned_cols=81 Identities=23% Similarity=0.339 Sum_probs=75.1
Q ss_pred CCEEEEcCCCCCCCHHHHHhhccC-C-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hc-CCceeCCeEeEEEEc
Q 021488 63 YNRIYIGNLSWDITEEDLKKLFSD-C-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KL-DQEVVRGRPVKISCA 138 (311)
Q Consensus 63 ~~~l~V~~L~~~~t~~~l~~~f~~-g-~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l-~~~~i~g~~i~v~~a 138 (311)
+++|||+|||+++|+++|+++|++ | .|.+|+|++++.++.++|||||+|.+.++|.+|+ .+ ++..|.|+.|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 368999999999999999999999 8 8999999999999999999999999999999999 56 456799999999999
Q ss_pred CCCCC
Q 021488 139 VPPKK 143 (311)
Q Consensus 139 ~~~~~ 143 (311)
.+++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 88765
No 26
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.5e-18 Score=133.35 Aligned_cols=117 Identities=20% Similarity=0.277 Sum_probs=72.8
Q ss_pred CCCcccCCCCchhhhhhcccCCCccccccccccccccCcccCCceeecCCCCcccccccCCccccccccCccccCCCCCC
Q 021488 169 GTSNDADNSGAVTSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRT 248 (311)
Q Consensus 169 ~~c~~c~~~gh~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~~~~~~~ 248 (311)
..|++|++.||++++||...=..=.+..+++..+= .....||+|++.||++++||.... ...|+.|+..
T Consensus 5 ~~C~~C~~~GH~~~~Cp~~~C~~Cg~~~gH~~~~C----~~~~~C~~Cg~~GH~~~~C~~~~~-------~~~C~~Cg~~ 73 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPHIICSYCGATDDHYSRHC----PKAIQCSKCDEVGHYRSQCPHKWK-------KVQCTLCKSK 73 (124)
T ss_dssp SCCSSCSSSSCCTTTTTSCCCTTTCCTTTCCTTTG----GGSSCSSSSSCSSSSTTTSCCCCC-------CCSSSSSCSS
T ss_pred CcccCCCCCCcCcccCcCCcCcCCCCcCCccCccc----CCcccccccCCCCCccccCcCccc-------CccCCCCCcC
Confidence 34677777777777776431000000001111110 112579999999999999998642 2349999999
Q ss_pred CCCCCCCCCCCcccCCCCCCCC---cCCCCCCccccccCCccccCCCCCCc
Q 021488 249 GNFADNAGLGTTNVSDNAGLSA---VSGKIRRRTCYECGEKGHLSSACPKK 296 (311)
Q Consensus 249 g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Cy~Cg~~gH~~~~Cp~~ 296 (311)
||++++|+..+..|........ ........+||+||+.|||++|||++
T Consensus 74 GH~~~~Cp~~~~~y~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~a~dCp~~ 124 (124)
T 2lli_A 74 KHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEK 124 (124)
T ss_dssp CCCTTTCCCSTTSCCSSSCCCCCCCSCCCCCCCCTTTTSSSCTTTTTSCCC
T ss_pred CcchhhCCCccccccccCccccccccccCCCCCCcCCCCCCCcCcccCcCC
Confidence 9999999987554332221111 11123467899999999999999974
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=6.8e-18 Score=127.14 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~ 139 (311)
+.++|||+|||+++++++|+++|++ |.|.++.|+.++.+++++|||||+|.+.++|.+|+ .||+..|.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 5679999999999999999999999 99999999999999999999999999999999999 799999999999999986
Q ss_pred CC
Q 021488 140 PP 141 (311)
Q Consensus 140 ~~ 141 (311)
..
T Consensus 85 ~~ 86 (110)
T 3s8s_A 85 KG 86 (110)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 28
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=4.5e-18 Score=137.76 Aligned_cols=129 Identities=13% Similarity=0.230 Sum_probs=79.0
Q ss_pred EEeCCHHHHHHHHH-cCCCCcC--CeeEEEEECccccc----------ccCCCCCCCCcCCCCEEEEcCCCCCCCHHHHH
Q 021488 15 INFRTEGAVKRALA-LDGSEMD--GLFLKIQPYKATKA----------KRTSDFTPKIVEGYNRIYIGNLSWDITEEDLK 81 (311)
Q Consensus 15 V~F~~~~~A~~Al~-l~g~~~~--g~~i~V~~~~~~~~----------~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l~ 81 (311)
.+|++.++|+.|+. +++.... |+.+.+........ .......+....+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 78999999999995 7776655 55555443211110 00011223334556789999999999999999
Q ss_pred hhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCCCC
Q 021488 82 KLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPPKK 143 (311)
Q Consensus 82 ~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~~~ 143 (311)
++|++ |.|..|.|+.++.++.++|||||+|.+.++|.+|| .|++..|.|+.|.|.|+.++..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 99999 99999999999999999999999999999999999 7999999999999999987665
No 29
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=120.22 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~ 139 (311)
+.++|||+|||.++++++|+++|++ |.|.++.++.++.++.++|||||+|.+.++|.+|+ .|++..+.|+.|+|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 4579999999999999999999999 99999999999889999999999999999999999 699999999999999998
Q ss_pred CCC
Q 021488 140 PPK 142 (311)
Q Consensus 140 ~~~ 142 (311)
+++
T Consensus 85 ~kp 87 (87)
T 3bs9_A 85 RKP 87 (87)
T ss_dssp ---
T ss_pred CCC
Confidence 764
No 30
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=1.8e-17 Score=118.18 Aligned_cols=79 Identities=25% Similarity=0.451 Sum_probs=75.7
Q ss_pred CEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCC
Q 021488 64 NRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPP 141 (311)
Q Consensus 64 ~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~ 141 (311)
.+|||+|||+++++++|+++|++ |.|.++.++.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999 99999999999989999999999999999999999 69999999999999999876
Q ss_pred C
Q 021488 142 K 142 (311)
Q Consensus 142 ~ 142 (311)
+
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.2e-17 Score=122.02 Aligned_cols=85 Identities=25% Similarity=0.350 Sum_probs=79.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||.++++++|+++|++ |.|..|.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 345689999999999999999999999 99999999999989999999999999999999999 6999999999999999
Q ss_pred cCCCCCC
Q 021488 138 AVPPKKG 144 (311)
Q Consensus 138 a~~~~~~ 144 (311)
+.++...
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9887654
No 32
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-17 Score=121.60 Aligned_cols=85 Identities=20% Similarity=0.395 Sum_probs=79.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEc
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCA 138 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a 138 (311)
..+.++|||+|||.++++++|+++|++ |.|..+.|+.++.++.++|||||+|.+.++|.+|++|++..|.|+.|+|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 346689999999999999999999999 9999999999998999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 021488 139 VPPKKG 144 (311)
Q Consensus 139 ~~~~~~ 144 (311)
.++...
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 887654
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.74 E-value=4.9e-18 Score=124.28 Aligned_cols=80 Identities=20% Similarity=0.344 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-C--ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCc----eeCCeE
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-C--KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQE----VVRGRP 132 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g--~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~----~i~g~~ 132 (311)
....+|||+|||+++|+++|+++|++ | .+.+|++++++.++.++|||||+|.+.++|.+|+ .|++. .|+|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45579999999999999999999999 8 5779999999999999999999999999999999 78875 599999
Q ss_pred eEEEEcCC
Q 021488 133 VKISCAVP 140 (311)
Q Consensus 133 i~v~~a~~ 140 (311)
|.|+||++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999865
No 34
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.73 E-value=6.4e-17 Score=122.83 Aligned_cols=86 Identities=26% Similarity=0.425 Sum_probs=80.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||+.+++++|+++|+. |.|..|.|+.++.++.++|||||+|.+.++|.+|| .|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 446689999999999999999999999 99999999999889999999999999999999999 7999999999999999
Q ss_pred cCCCCCCC
Q 021488 138 AVPPKKGI 145 (311)
Q Consensus 138 a~~~~~~~ 145 (311)
+.++....
T Consensus 92 a~~~~~~~ 99 (115)
T 2dgo_A 92 ATRKPPAP 99 (115)
T ss_dssp SSCCCCCS
T ss_pred ccCCCCCC
Confidence 99877643
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-17 Score=121.13 Aligned_cols=84 Identities=31% Similarity=0.470 Sum_probs=79.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
.+.++|||+|||+++++++|+++|++ |.|..+.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35679999999999999999999999 99999999999989999999999999999999999 89999999999999999
Q ss_pred CCCCCC
Q 021488 139 VPPKKG 144 (311)
Q Consensus 139 ~~~~~~ 144 (311)
.+++..
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 887654
No 36
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.7e-17 Score=120.39 Aligned_cols=84 Identities=21% Similarity=0.399 Sum_probs=78.3
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
...+.++|||+|||.++++++|+++|++ |.|..+.|+.++ ++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3446689999999999999999999999 999999999998 8999999999999999999999 899999999999999
Q ss_pred EcCCCCC
Q 021488 137 CAVPPKK 143 (311)
Q Consensus 137 ~a~~~~~ 143 (311)
++.+++.
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9988765
No 37
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=8.4e-17 Score=119.73 Aligned_cols=84 Identities=30% Similarity=0.543 Sum_probs=78.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEc
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCA 138 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a 138 (311)
..+.++|||+|||+++++++|+++|++ + |..|.|+.++.++.++|||||+|.+.++|.+|++|++..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 345689999999999999999999999 7 99999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 021488 139 VPPKKG 144 (311)
Q Consensus 139 ~~~~~~ 144 (311)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2dng_A 91 EGRKQD 96 (103)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 887653
No 38
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=120.94 Aligned_cols=83 Identities=28% Similarity=0.441 Sum_probs=78.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEE-EEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSL-RFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i-~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
+.++|||+|||+++++++|+++|++ |.|..+ .|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 5689999999999999999999999 999999 99999889999999999999999999999 69999999999999999
Q ss_pred CCCCCC
Q 021488 139 VPPKKG 144 (311)
Q Consensus 139 ~~~~~~ 144 (311)
.++...
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 887654
No 39
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-17 Score=119.43 Aligned_cols=83 Identities=31% Similarity=0.588 Sum_probs=78.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~ 139 (311)
+.++|||+|||.++++++|+++|++ |.|..+.++.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 5679999999999999999999999 99999999999989999999999999999999999 699999999999999998
Q ss_pred CCCCC
Q 021488 140 PPKKG 144 (311)
Q Consensus 140 ~~~~~ 144 (311)
++...
T Consensus 84 ~~~~~ 88 (95)
T 2dnz_A 84 ERLDG 88 (95)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 87653
No 40
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=5e-17 Score=123.48 Aligned_cols=85 Identities=14% Similarity=0.234 Sum_probs=79.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||+++++++|+++|++ |.|..+.|+.++.++.++|||||+|.+.++|.+|| .|++..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999 99999999999999999999999999999999999 8999999999999999
Q ss_pred cCCCCCC
Q 021488 138 AVPPKKG 144 (311)
Q Consensus 138 a~~~~~~ 144 (311)
+.++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpz_A 102 KRSKNDS 108 (115)
T ss_dssp CCCSCCC
T ss_pred cCCCCcC
Confidence 9887653
No 41
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-17 Score=122.97 Aligned_cols=88 Identities=23% Similarity=0.308 Sum_probs=80.9
Q ss_pred CCcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcC------CceeC
Q 021488 58 KIVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLD------QEVVR 129 (311)
Q Consensus 58 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~------~~~i~ 129 (311)
....+.++|||+|||+++++++|+++|.+ |.|..|.|+.++.++.++|||||+|.+.++|.+|+ .++ +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 33456789999999999999999999999 99999999999999999999999999999999999 799 99999
Q ss_pred CeEeEEEEcCCCCCCC
Q 021488 130 GRPVKISCAVPPKKGI 145 (311)
Q Consensus 130 g~~i~v~~a~~~~~~~ 145 (311)
|+.|+|.++.++....
T Consensus 90 g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp SCEEEEECCCCCCCCC
T ss_pred CEEEEEEECCCCccCC
Confidence 9999999998876643
No 42
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=122.51 Aligned_cols=86 Identities=21% Similarity=0.386 Sum_probs=79.8
Q ss_pred CCcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEE
Q 021488 58 KIVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKI 135 (311)
Q Consensus 58 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v 135 (311)
....+.++|||+|||+++++++|+++|++ |.|..+.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999999999 99999999999989999999999999999999999 69999999999999
Q ss_pred EEcCCCCC
Q 021488 136 SCAVPPKK 143 (311)
Q Consensus 136 ~~a~~~~~ 143 (311)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99987654
No 43
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-17 Score=121.08 Aligned_cols=85 Identities=21% Similarity=0.413 Sum_probs=79.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||+++++++|+++|++ |.|..+.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 346689999999999999999999999 99999999999889999999999999999999999 7999999999999999
Q ss_pred cCCCCCC
Q 021488 138 AVPPKKG 144 (311)
Q Consensus 138 a~~~~~~ 144 (311)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9887654
No 44
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.2e-17 Score=121.26 Aligned_cols=86 Identities=22% Similarity=0.393 Sum_probs=79.9
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
...+.++|||+|||+++++++|+++|++ |.|..+.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 3446689999999999999999999999 99999999999989999999999999999999999 699999999999999
Q ss_pred EcCCCCCC
Q 021488 137 CAVPPKKG 144 (311)
Q Consensus 137 ~a~~~~~~ 144 (311)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99887653
No 45
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=6.8e-17 Score=116.34 Aligned_cols=79 Identities=27% Similarity=0.526 Sum_probs=74.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEc
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCA 138 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a 138 (311)
..+.++|||+|||+++++++|+++|++ |.|..+.++.++.++.++|||||+|.+.++|.+|+++++..|.|+.|+|++|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 346689999999999999999999999 9999999999999999999999999999999999987889999999999875
No 46
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=3.6e-17 Score=120.13 Aligned_cols=82 Identities=26% Similarity=0.404 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~ 139 (311)
++++|||+|||.++++++|+++|++ |.|.++.++.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 3579999999999999999999999 99999999999989999999999999999999999 799999999999999998
Q ss_pred CCCC
Q 021488 140 PPKK 143 (311)
Q Consensus 140 ~~~~ 143 (311)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8654
No 47
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.7e-17 Score=119.87 Aligned_cols=83 Identities=27% Similarity=0.494 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCC-CCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKET-GEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~-~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a 138 (311)
.+.++|||+|||+++++++|+++|+. | |..|.|+.++.+ +.++|||||+|.+.++|.+||.|++..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEc
Confidence 45689999999999999999999999 9 999999999887 89999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 021488 139 VPPKKG 144 (311)
Q Consensus 139 ~~~~~~ 144 (311)
.++...
T Consensus 92 ~~~~~~ 97 (104)
T 1wi8_A 92 DQAQDK 97 (104)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 887664
No 48
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.4e-17 Score=121.86 Aligned_cols=85 Identities=18% Similarity=0.356 Sum_probs=79.0
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
...+.++|||+|||.++++++|+++|+. |.|..+.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3446689999999999999999999999 99999999999999999999999999999999999 799999999999999
Q ss_pred EcCCCCC
Q 021488 137 CAVPPKK 143 (311)
Q Consensus 137 ~a~~~~~ 143 (311)
++.+++.
T Consensus 99 ~a~~~~~ 105 (106)
T 1p27_B 99 WCFVRGP 105 (106)
T ss_dssp ESEESSC
T ss_pred eecCCCC
Confidence 9987653
No 49
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=5.1e-17 Score=122.02 Aligned_cols=85 Identities=34% Similarity=0.572 Sum_probs=79.1
Q ss_pred CCcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEE
Q 021488 58 KIVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKI 135 (311)
Q Consensus 58 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v 135 (311)
....+.++|||+|||..+++++|+++|++ |.|..+.++.++.++.++|||||+|.+.++|.+|+ .+++..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999 99999999999989999999999999999999999 79999999999999
Q ss_pred EEcCCCC
Q 021488 136 SCAVPPK 142 (311)
Q Consensus 136 ~~a~~~~ 142 (311)
.++.++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9988764
No 50
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=4.6e-17 Score=116.66 Aligned_cols=79 Identities=22% Similarity=0.424 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
.+.++|||+|||+++++++|+++|++ |.|..+.++.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35689999999999999999999999 99999999999889999999999999999999999 79999999999999997
Q ss_pred C
Q 021488 139 V 139 (311)
Q Consensus 139 ~ 139 (311)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 51
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.8e-17 Score=120.81 Aligned_cols=85 Identities=25% Similarity=0.463 Sum_probs=79.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||+++++++|+++|++ |.|..+.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346689999999999999999999999 99999999999989999999999999999999999 8999999999999999
Q ss_pred cCCCCCC
Q 021488 138 AVPPKKG 144 (311)
Q Consensus 138 a~~~~~~ 144 (311)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9887654
No 52
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.1e-17 Score=118.18 Aligned_cols=81 Identities=22% Similarity=0.284 Sum_probs=76.2
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||+++++++|+++|++ |.|..+.++.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|++
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 345689999999999999999999999 99999999999999999999999999999999999 6999999999999999
Q ss_pred cCC
Q 021488 138 AVP 140 (311)
Q Consensus 138 a~~ 140 (311)
+.+
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 764
No 53
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.1e-17 Score=119.32 Aligned_cols=83 Identities=27% Similarity=0.395 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCC---CCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKE---TGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~---~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
+.++|||+|||+++++++|+++|++ |.|..+.|+.++. ++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 5679999999999999999999999 9999999998876 6689999999999999999999 699999999999999
Q ss_pred EcCCCCCC
Q 021488 137 CAVPPKKG 144 (311)
Q Consensus 137 ~a~~~~~~ 144 (311)
++.++...
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99886653
No 54
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=9e-17 Score=117.42 Aligned_cols=80 Identities=26% Similarity=0.432 Sum_probs=75.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||+++++++|+++|++ |.|..+.++.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 345689999999999999999999999 99999999999989999999999999999999999 7999999999999999
Q ss_pred cC
Q 021488 138 AV 139 (311)
Q Consensus 138 a~ 139 (311)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 55
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=6.3e-17 Score=121.88 Aligned_cols=86 Identities=15% Similarity=0.298 Sum_probs=79.6
Q ss_pred CCcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEE
Q 021488 58 KIVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKI 135 (311)
Q Consensus 58 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v 135 (311)
....+.++|||+|||..+++++|+++|++ |.|..+.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 33456689999999999999999999999 99999999999989999999999999999999999 69999999999999
Q ss_pred EEcCCCCC
Q 021488 136 SCAVPPKK 143 (311)
Q Consensus 136 ~~a~~~~~ 143 (311)
.++.+++.
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987654
No 56
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=9.4e-17 Score=118.55 Aligned_cols=82 Identities=29% Similarity=0.463 Sum_probs=76.2
Q ss_pred CCcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeE--------EEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCce
Q 021488 58 KIVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISS--------LRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEV 127 (311)
Q Consensus 58 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~--------i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~ 127 (311)
....+..+|||+|||.++++++|+++|++ |.|.. +.++.++.++.++|||||+|.+.++|.+|+ .|++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 33456689999999999999999999999 99999 999999999999999999999999999999 799999
Q ss_pred eCCeEeEEEEcC
Q 021488 128 VRGRPVKISCAV 139 (311)
Q Consensus 128 i~g~~i~v~~a~ 139 (311)
|.|+.|+|++|.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 57
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.70 E-value=7.4e-17 Score=122.54 Aligned_cols=80 Identities=25% Similarity=0.348 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~ 139 (311)
...+|||+|||+++++++|+++|++ |.|.+++|+.+. +.++|||||+|.+.++|.+|| .|++..|.|+.|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3468999999999999999999999 999999999985 447999999999999999999 799999999999999998
Q ss_pred CCCC
Q 021488 140 PPKK 143 (311)
Q Consensus 140 ~~~~ 143 (311)
++..
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7654
No 58
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.70 E-value=9.7e-18 Score=121.70 Aligned_cols=80 Identities=25% Similarity=0.414 Sum_probs=70.6
Q ss_pred CEEEEcCCCCCCCHHHHHhhccC-C--ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcC
Q 021488 64 NRIYIGNLSWDITEEDLKKLFSD-C--KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 64 ~~l~V~~L~~~~t~~~l~~~f~~-g--~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~ 139 (311)
.+|||+|||+++++++|+++|++ | .|.++.++.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 47999999999999999999999 9 9999999999999999999999999999999999 799999999999999998
Q ss_pred CCCC
Q 021488 140 PPKK 143 (311)
Q Consensus 140 ~~~~ 143 (311)
+.+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7664
No 59
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1e-16 Score=119.97 Aligned_cols=86 Identities=21% Similarity=0.390 Sum_probs=79.5
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeec-CCCCCceeEEEEEecCHHHHHHHH-hc-CCceeCCeEeE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTN-KETGEFRGYAHVDFSDSLSLSMAL-KL-DQEVVRGRPVK 134 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~-~~~~~~~G~afV~f~~~~~a~~al-~l-~~~~i~g~~i~ 134 (311)
...+.++|||+|||+.+++++|+++|++ |.|..|.|+.+ +.++.++|||||+|.+.++|.+|+ .| ++..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3446689999999999999999999999 99999999998 789999999999999999999999 78 99999999999
Q ss_pred EEEcCCCCCC
Q 021488 135 ISCAVPPKKG 144 (311)
Q Consensus 135 v~~a~~~~~~ 144 (311)
|.++.++...
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999887653
No 60
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.8e-16 Score=117.88 Aligned_cols=82 Identities=24% Similarity=0.380 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
.+.++|||+|||+++++++|+++|++ |.|..+.|+.+ ++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 46689999999999999999999999 99999999988 8899999999999999999999 69999999999999999
Q ss_pred CCCCCC
Q 021488 139 VPPKKG 144 (311)
Q Consensus 139 ~~~~~~ 144 (311)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2d9p_A 91 QRKEER 96 (103)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 887654
No 61
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=1.4e-16 Score=115.16 Aligned_cols=80 Identities=29% Similarity=0.522 Sum_probs=76.0
Q ss_pred CCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcCCC
Q 021488 63 YNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPP 141 (311)
Q Consensus 63 ~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~~~ 141 (311)
.++|||+|||+++++++|+++|++ |.|..+.++.++.++.++|||||+|.+.++|.+|+.+++..|.|+.|+|.++.+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 479999999999999999999999 9999999999998999999999999999999999999999999999999998764
Q ss_pred C
Q 021488 142 K 142 (311)
Q Consensus 142 ~ 142 (311)
.
T Consensus 86 ~ 86 (89)
T 3ucg_A 86 R 86 (89)
T ss_dssp S
T ss_pred C
Confidence 3
No 62
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=120.86 Aligned_cols=86 Identities=24% Similarity=0.315 Sum_probs=79.4
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-Ccee--------EEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCcee
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKIS--------SLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVV 128 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~--------~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i 128 (311)
...+.++|||+|||+++++++|+++|++ |.|. .+.|+.++.++.++|||||+|.+.++|.+|| .|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 3446789999999999999999999999 9998 6999999889999999999999999999999 6999999
Q ss_pred CCeEeEEEEcCCCCCC
Q 021488 129 RGRPVKISCAVPPKKG 144 (311)
Q Consensus 129 ~g~~i~v~~a~~~~~~ 144 (311)
.|+.|+|.++.++...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999887653
No 63
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=1e-16 Score=120.60 Aligned_cols=86 Identities=21% Similarity=0.400 Sum_probs=75.8
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISC 137 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~ 137 (311)
...+.++|||+|||.++++++|+++|+. |.|..+.|+.++.++.++|||||+|.+.++|.+|++..+..|.|+.|+|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 3446689999999999999999999999 999999999999899999999999999999999995446999999999999
Q ss_pred cCCCCCC
Q 021488 138 AVPPKKG 144 (311)
Q Consensus 138 a~~~~~~ 144 (311)
+.++...
T Consensus 101 a~~~~~~ 107 (109)
T 2rs2_A 101 AFPRRAQ 107 (109)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9887653
No 64
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.70 E-value=2.1e-16 Score=117.89 Aligned_cols=83 Identities=22% Similarity=0.286 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCC---eEeEE
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRG---RPVKI 135 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g---~~i~v 135 (311)
.+.++|||+|||.++++++|+++|++ |.|..+.|+.++ ++.++|||||+|.+.++|.+|+ .|++..+.+ +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 45689999999999999999999999 999999999998 7999999999999999999999 799999988 99999
Q ss_pred EEcCCCCCC
Q 021488 136 SCAVPPKKG 144 (311)
Q Consensus 136 ~~a~~~~~~ 144 (311)
.++.+++..
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999887654
No 65
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=121.40 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
.+.++|||+|||.++++++|+++|++ |.|..|.|+.+. ++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 35579999999999999999999999 999999999998 8999999999999999999999 79999999999999999
Q ss_pred CCCCCC
Q 021488 139 VPPKKG 144 (311)
Q Consensus 139 ~~~~~~ 144 (311)
.++...
T Consensus 84 ~~~~~~ 89 (116)
T 2fy1_A 84 KKPSFQ 89 (116)
T ss_dssp CCSSCS
T ss_pred CCCCCC
Confidence 876643
No 66
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.5e-17 Score=118.49 Aligned_cols=83 Identities=22% Similarity=0.327 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-Ccee-EEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeE----e
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKIS-SLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRP----V 133 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~-~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~----i 133 (311)
.+.++|||+|||+++++++|+++|++ |.|. .+.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 45689999999999999999999999 9999 9999999999999999999999999999999 69999999999 9
Q ss_pred EEEEcCCCCC
Q 021488 134 KISCAVPPKK 143 (311)
Q Consensus 134 ~v~~a~~~~~ 143 (311)
+|.++.+...
T Consensus 87 ~v~~a~~~~~ 96 (99)
T 2div_A 87 KLNYATYSGP 96 (99)
T ss_dssp CEEETTCCSS
T ss_pred EEeecCCCCC
Confidence 9999877543
No 67
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.70 E-value=1e-16 Score=119.89 Aligned_cols=85 Identities=26% Similarity=0.427 Sum_probs=78.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCcee---CCeEeE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVV---RGRPVK 134 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i---~g~~i~ 134 (311)
..+.++|||+|||.++++++|+++|++ |.|..|.|+.++.++.++|||||+|.+.++|.+|+ .|++..+ .++.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 446689999999999999999999999 99999999999999999999999999999999999 7999887 899999
Q ss_pred EEEcCCCCCC
Q 021488 135 ISCAVPPKKG 144 (311)
Q Consensus 135 v~~a~~~~~~ 144 (311)
|.++.++...
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999886653
No 68
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.3e-16 Score=119.95 Aligned_cols=84 Identities=25% Similarity=0.449 Sum_probs=77.3
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
...+.++|||+|||+++++++|+++|++ |.|..+.|+.++.++.++|||||+|.+.++|.+|| .+++ .|.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 3446789999999999999999999999 99999999999999999999999999999999999 6887 8999999999
Q ss_pred EcCCCCC
Q 021488 137 CAVPPKK 143 (311)
Q Consensus 137 ~a~~~~~ 143 (311)
++.+...
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9976543
No 69
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=119.48 Aligned_cols=86 Identities=22% Similarity=0.431 Sum_probs=79.3
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISC 137 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~ 137 (311)
...+.++|||+|||+++++++|+++|.+ |.|..+.|+.++.++.++|||||+|.+.++|.+||..++..|.|+.|+|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 3456789999999999999999999999 999999999999999999999999999999999994499999999999999
Q ss_pred cCCCCCC
Q 021488 138 AVPPKKG 144 (311)
Q Consensus 138 a~~~~~~ 144 (311)
+.++...
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9887654
No 70
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.8e-16 Score=115.56 Aligned_cols=85 Identities=20% Similarity=0.377 Sum_probs=77.8
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISC 137 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~ 137 (311)
...+.++|||+|||+++++++|+++|.+ |.|..+.|+.++.++.++|||||+|.+.++|.+||. ++..|.|+.|+|.+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEe
Confidence 3446689999999999999999999999 999999999999899999999999999999999996 36799999999999
Q ss_pred cCCCCCC
Q 021488 138 AVPPKKG 144 (311)
Q Consensus 138 a~~~~~~ 144 (311)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9887664
No 71
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.69 E-value=3e-16 Score=123.21 Aligned_cols=85 Identities=21% Similarity=0.346 Sum_probs=79.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
....++|||+|||.++++++|+++|+. |.|.+|.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 445689999999999999999999999 99999999999999999999999999999999999 6999999999999999
Q ss_pred cCCCCCC
Q 021488 138 AVPPKKG 144 (311)
Q Consensus 138 a~~~~~~ 144 (311)
+.++...
T Consensus 119 a~~~~~~ 125 (139)
T 1u6f_A 119 AASGHQR 125 (139)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9887654
No 72
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.4e-16 Score=115.30 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=76.3
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
...+.++|||+|||+++++++|+++|++ |.|..+.|+.++. .++|||||+|.+.++|.+|+ .|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3446689999999999999999999999 9999999998864 37999999999999999999 799999999999999
Q ss_pred EcCCCCCC
Q 021488 137 CAVPPKKG 144 (311)
Q Consensus 137 ~a~~~~~~ 144 (311)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cq3_A 89 NATARVMT 96 (103)
T ss_dssp ECCSSCCC
T ss_pred EcccCCCC
Confidence 99887654
No 73
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=115.40 Aligned_cols=81 Identities=22% Similarity=0.431 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCC-ceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGE-FRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~-~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
..++|||+|||.++++++|+++|++ |.|..+.++.+..++. ++|||||+|.+.++|.+|+ .|++..|.|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4579999999999999999999999 9999999999887666 8999999999999999999 69999999999999999
Q ss_pred CCCC
Q 021488 139 VPPK 142 (311)
Q Consensus 139 ~~~~ 142 (311)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 74
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=120.43 Aligned_cols=84 Identities=25% Similarity=0.460 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcC
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~ 139 (311)
.+.++|||+|||+++++++|+++|.. |.|..|.|+.++.++.++|||||+|.+.++|.+||+.++..|.|+.|+|.++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECC
Confidence 34579999999999999999999999 99999999999989999999999999999999999559999999999999999
Q ss_pred CCCCC
Q 021488 140 PPKKG 144 (311)
Q Consensus 140 ~~~~~ 144 (311)
++...
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 88764
No 75
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.69 E-value=7.5e-17 Score=124.98 Aligned_cols=85 Identities=20% Similarity=0.281 Sum_probs=79.0
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
...+.++|||+|||+++++++|+++|++ |.|..|.|+.++.++.++|||||+|.+.++|.+|| .|++..|.|+.|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456789999999999999999999999 99999999999999999999999999999999999 699999999999999
Q ss_pred EcCCCCC
Q 021488 137 CAVPPKK 143 (311)
Q Consensus 137 ~a~~~~~ 143 (311)
++.+++.
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EecCCCC
Confidence 9887653
No 76
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.69 E-value=3.3e-16 Score=125.45 Aligned_cols=84 Identities=23% Similarity=0.368 Sum_probs=78.9
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||.++++++|+++|++ |.|..|.|+.++.++.++|||||+|.+.++|.+|| .|++..|.++.|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346689999999999999999999999 99999999999999999999999999999999999 6999999999999999
Q ss_pred cCCCCC
Q 021488 138 AVPPKK 143 (311)
Q Consensus 138 a~~~~~ 143 (311)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987654
No 77
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.8e-16 Score=115.54 Aligned_cols=84 Identities=27% Similarity=0.380 Sum_probs=75.7
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
...+.++|||+|||+.+++++|+++|++ |.|..+.|+.++.+ ++|||||+|.+.++|.+|+ .|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3446689999999999999999999999 99999999988543 6899999999999999999 699999999999999
Q ss_pred EcCCCCCC
Q 021488 137 CAVPPKKG 144 (311)
Q Consensus 137 ~a~~~~~~ 144 (311)
++.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqi_A 89 WATTPSSQ 96 (103)
T ss_dssp ECCCTTCC
T ss_pred ECCCCccc
Confidence 99886653
No 78
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.4e-17 Score=120.93 Aligned_cols=83 Identities=28% Similarity=0.576 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
.+.++|||+|||..+++++|+++|++ |.|..+.++.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35579999999999999999999999 99999999999989999999999999999999999 79999999999999998
Q ss_pred CCCCC
Q 021488 139 VPPKK 143 (311)
Q Consensus 139 ~~~~~ 143 (311)
.++..
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 87654
No 79
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=117.72 Aligned_cols=81 Identities=19% Similarity=0.237 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcC
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~ 139 (311)
....+|||+|||+++++++|+++|++ | +..|.|+.++ +++++|||||+|.+.++|.+||++++..|+++.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 45679999999999999999999999 8 5599999998 8999999999999999999999889999999999999987
Q ss_pred CCCC
Q 021488 140 PPKK 143 (311)
Q Consensus 140 ~~~~ 143 (311)
+...
T Consensus 91 ~~~~ 94 (102)
T 1wez_A 91 TAGT 94 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 80
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=6.7e-16 Score=116.93 Aligned_cols=83 Identities=19% Similarity=0.316 Sum_probs=76.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||+++++++|+++|.+ |.|..+.|+.++ ++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 345689999999999999999999999 999999999997 6899999999999999999999 6999999999999999
Q ss_pred cCCCCC
Q 021488 138 AVPPKK 143 (311)
Q Consensus 138 a~~~~~ 143 (311)
+.....
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 876544
No 81
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.4e-16 Score=112.60 Aligned_cols=82 Identities=22% Similarity=0.373 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcCC
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVP 140 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~~ 140 (311)
....+|||+|||+++++++|+++|+...|..+.|+.+ .++.++|||||+|.+.++|.+|+.+++..|.|+.|+|.++.+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTSCCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhCCceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence 3567999999999999999999999877999999999 689999999999999999999999999999999999999988
Q ss_pred CCC
Q 021488 141 PKK 143 (311)
Q Consensus 141 ~~~ 143 (311)
++.
T Consensus 87 ~~~ 89 (91)
T 2dgw_A 87 GPS 89 (91)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 82
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=115.89 Aligned_cols=80 Identities=26% Similarity=0.439 Sum_probs=74.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||+.+++++|+++|++ |.|..+.|+.++. +.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 345689999999999999999999999 9999999999985 889999999999999999999 6999999999999999
Q ss_pred cCC
Q 021488 138 AVP 140 (311)
Q Consensus 138 a~~ 140 (311)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 83
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.2e-17 Score=119.42 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcCC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVP 140 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~~ 140 (311)
..++|||+|||+++|+++|+++|++ |.|.+|.|+.++. +.++|||||+|.+.++|.+|+.+++..|.|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 4579999999999999999999999 9999999999986 9999999999999999999999999999999999998654
No 84
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.68 E-value=2.8e-16 Score=117.67 Aligned_cols=80 Identities=21% Similarity=0.411 Sum_probs=75.2
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
...+.++|||+|||+.+++++|+++|.+ |.|..+.|+.++ ++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456789999999999999999999999 999999999998 9999999999999999999999 699999999999999
Q ss_pred EcC
Q 021488 137 CAV 139 (311)
Q Consensus 137 ~a~ 139 (311)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 975
No 85
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.68 E-value=2.8e-16 Score=119.86 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=75.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||+++++++|+++|++ |.|..+.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 446689999999999999999999999 99999999999889999999999999999999999 7999999999999998
Q ss_pred cC
Q 021488 138 AV 139 (311)
Q Consensus 138 a~ 139 (311)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 86
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=116.80 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
....+|||+|||+++++++|+++|.+ |.|..+.++.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34578999999999999999999999 99988888888889999999999999999999999 89999999999999998
Q ss_pred CCCC
Q 021488 139 VPPK 142 (311)
Q Consensus 139 ~~~~ 142 (311)
..+.
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 7543
No 87
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=6.5e-17 Score=113.06 Aligned_cols=74 Identities=24% Similarity=0.389 Sum_probs=71.1
Q ss_pred EEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEc
Q 021488 65 RIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCA 138 (311)
Q Consensus 65 ~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a 138 (311)
+|||+|||+++++++|+++|++ |.|..+.++.++.++.++|||||+|.+.++|.+|+++++..|.|+.|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5899999999999999999999 9999999999998999999999999999999999999999999999999875
No 88
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=2.6e-17 Score=121.88 Aligned_cols=80 Identities=14% Similarity=0.215 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCC------CCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCC-eE
Q 021488 62 GYNRIYIGNLSW------DITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRG-RP 132 (311)
Q Consensus 62 ~~~~l~V~~L~~------~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g-~~ 132 (311)
..++|||+|||. ++++++|+++|++ |.|.++.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357999999999 9999999999999 99999999999999999999999999999999999 799999999 99
Q ss_pred eEEEEcCCC
Q 021488 133 VKISCAVPP 141 (311)
Q Consensus 133 i~v~~a~~~ 141 (311)
|+|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998764
No 89
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.67 E-value=1.6e-16 Score=122.61 Aligned_cols=86 Identities=17% Similarity=0.346 Sum_probs=79.7
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
...+..+|||+|||+.+++++|+++|++ |.|..|.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 3445679999999999999999999999 99999999999999999999999999999999999 799999999999999
Q ss_pred EcCCCCCC
Q 021488 137 CAVPPKKG 144 (311)
Q Consensus 137 ~a~~~~~~ 144 (311)
++.++...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99876653
No 90
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=126.34 Aligned_cols=80 Identities=26% Similarity=0.480 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-C--ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-C--KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g--~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..++|||+|||+++++++|+++|+. | .|.+|.|+.++.++.++|||||+|.+.++|.+|| .|++..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 4579999999999999999999999 9 9999999999999999999999999999999999 7999999999999999
Q ss_pred cCCC
Q 021488 138 AVPP 141 (311)
Q Consensus 138 a~~~ 141 (311)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8654
No 91
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=3.6e-16 Score=113.70 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=75.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||.++++++|+++|++ |.|..+.|..+ ++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345689999999999999999999999 99999999874 7889999999999999999999 6999999999999999
Q ss_pred cCCCCC
Q 021488 138 AVPPKK 143 (311)
Q Consensus 138 a~~~~~ 143 (311)
+.+...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987654
No 92
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=7.9e-17 Score=119.25 Aligned_cols=82 Identities=28% Similarity=0.504 Sum_probs=74.4
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecC-CCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNK-ETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~-~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~ 137 (311)
....++|||+|||.++++++|+++|+. | |.++.|+.++ .++.++|||||+|.+.++|.+|+.|++..|.|+.|+|++
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 346689999999999999999999999 9 9999999998 689999999999999999999999999999999999999
Q ss_pred cCCCC
Q 021488 138 AVPPK 142 (311)
Q Consensus 138 a~~~~ 142 (311)
+.++.
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 88764
No 93
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4.2e-16 Score=114.37 Aligned_cols=79 Identities=14% Similarity=0.239 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCCHHHHH----hhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEE
Q 021488 62 GYNRIYIGNLSWDITEEDLK----KLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKI 135 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~----~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v 135 (311)
...+|||+|||+++++++|+ ++|++ |.|.++.|+.++.+ +|||||+|.+.++|.+|+ .|++..|.|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45789999999999999999 99999 99999999988765 889999999999999999 79999999999999
Q ss_pred EEcCCCCC
Q 021488 136 SCAVPPKK 143 (311)
Q Consensus 136 ~~a~~~~~ 143 (311)
+++.++..
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99987654
No 94
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=5.1e-16 Score=119.45 Aligned_cols=82 Identities=28% Similarity=0.498 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcCC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVP 140 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~~ 140 (311)
+.++|||+|||.++++++|+++|++ |.|.++.|+.++.++.++|||||+|.+.++|.+|++|++..|.|+.|+|.++.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 4579999999999999999999999 999999999998899999999999999999999999999999999999999887
Q ss_pred CCC
Q 021488 141 PKK 143 (311)
Q Consensus 141 ~~~ 143 (311)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 554
No 95
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.7e-16 Score=117.42 Aligned_cols=83 Identities=19% Similarity=0.308 Sum_probs=76.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-Cc-eeEEEEe-ecCCCCCceeEEEEEecCHHHHHHHH-hcC--CceeCCeEeEE
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CK-ISSLRFG-TNKETGEFRGYAHVDFSDSLSLSMAL-KLD--QEVVRGRPVKI 135 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~-i~~i~v~-~~~~~~~~~G~afV~f~~~~~a~~al-~l~--~~~i~g~~i~v 135 (311)
+.++|||+|||+++++++|+++|.+ |. |.++.++ .+..++.++|||||+|.+.++|.+|+ .|+ +..|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5579999999999999999999999 97 9999998 78888899999999999999999999 686 58999999999
Q ss_pred EEcCCCCCC
Q 021488 136 SCAVPPKKG 144 (311)
Q Consensus 136 ~~a~~~~~~ 144 (311)
.++.++...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999887653
No 96
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=117.07 Aligned_cols=78 Identities=19% Similarity=0.225 Sum_probs=70.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcC--CceeCCeEeEEE
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLD--QEVVRGRPVKIS 136 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~--~~~i~g~~i~v~ 136 (311)
.+..+|||+|||+++++++|+++|++ |.|.++.|+.+ +|||||+|.+.++|..|+ .++ +..|.|+.|+|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 35689999999999999999999999 99999999865 799999999999999999 575 478999999999
Q ss_pred EcCCCCCC
Q 021488 137 CAVPPKKG 144 (311)
Q Consensus 137 ~a~~~~~~ 144 (311)
++.+++..
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99876653
No 97
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=121.05 Aligned_cols=82 Identities=22% Similarity=0.393 Sum_probs=76.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcC
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~ 139 (311)
...++|||+|||+++++++|+++|.. |.|..+.|+.++.++.++|||||+|.+.++|.+||.|++..|.|+.|+|.++.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 34579999999999999999999999 99999999999989999999999999999999999999999999999999987
Q ss_pred CCC
Q 021488 140 PPK 142 (311)
Q Consensus 140 ~~~ 142 (311)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 644
No 98
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.6e-16 Score=116.40 Aligned_cols=84 Identities=25% Similarity=0.445 Sum_probs=77.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC--CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCce-eCCeEeEEE
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD--CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEV-VRGRPVKIS 136 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~--g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~-i~g~~i~v~ 136 (311)
.+..+|||+|||+++++++|+++|++ |.|..+.|+.++ ++.++|||||+|.+.++|.+|+ .|++.. |.|+.|+|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45689999999999999999999997 789999999998 9999999999999999999999 699999 999999999
Q ss_pred EcCCCCCCC
Q 021488 137 CAVPPKKGI 145 (311)
Q Consensus 137 ~a~~~~~~~ 145 (311)
++.++....
T Consensus 86 ~a~~~~~~~ 94 (104)
T 2dhg_A 86 VAIPKASRV 94 (104)
T ss_dssp BCCCCCSCC
T ss_pred EccCCCcCC
Confidence 998776543
No 99
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.66 E-value=1.6e-16 Score=116.37 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~ 139 (311)
+..+|||+|||+++++++|+++|.+ |.|..+.++.++.++.++|||||+|.++++|.+|+ .|++..|.|+.|+|+++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4579999999999999999999999 99998999998889999999999999999999999 699999999999999875
Q ss_pred C
Q 021488 140 P 140 (311)
Q Consensus 140 ~ 140 (311)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 100
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-15 Score=113.08 Aligned_cols=83 Identities=29% Similarity=0.458 Sum_probs=75.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
..+.++|||+|||+++++++|+++|+. +..+.++.++.++.++|||||+|.+.++|.+|| .|++..|.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~--~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDG--SVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTT--CSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcC--CeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 446789999999999999999999996 347888888889999999999999999999999 69999999999999999
Q ss_pred CCCCCC
Q 021488 139 VPPKKG 144 (311)
Q Consensus 139 ~~~~~~ 144 (311)
.++...
T Consensus 90 ~~~~~~ 95 (102)
T 2fc8_A 90 KPKGEG 95 (102)
T ss_dssp CCCCSS
T ss_pred cCCCCC
Confidence 887654
No 101
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=119.91 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=75.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-Cce-eEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKI-SSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i-~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||+++++++|+++|+. |.| ..|.|+.++ ++.++|||||+|.+.++|.+||++++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 345689999999999999999999999 888 889999998 99999999999999999999996699999999999999
Q ss_pred cCCCC
Q 021488 138 AVPPK 142 (311)
Q Consensus 138 a~~~~ 142 (311)
+.++.
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 87654
No 102
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5e-16 Score=117.17 Aligned_cols=83 Identities=19% Similarity=0.204 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHH---hhccC-CceeEEEEeecCCCC---CceeEEEEEecCHHHHHHHH-hcCCceeCCeE
Q 021488 61 EGYNRIYIGNLSWDITEEDLK---KLFSD-CKISSLRFGTNKETG---EFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRP 132 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~---~~f~~-g~i~~i~v~~~~~~~---~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~ 132 (311)
...++|||+|||+++++++|+ ++|++ |.|..+.|+.+..++ .++|||||+|.+.++|.+|| .|++..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 355799999999999999999 99999 999999999887644 45699999999999999999 79999999999
Q ss_pred eEEEEcCCCCC
Q 021488 133 VKISCAVPPKK 143 (311)
Q Consensus 133 i~v~~a~~~~~ 143 (311)
|+|.++.+++.
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999988774
No 103
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.66 E-value=3.6e-16 Score=114.62 Aligned_cols=77 Identities=21% Similarity=0.243 Sum_probs=68.9
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCce--eCCeEeEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEV--VRGRPVKI 135 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~--i~g~~i~v 135 (311)
..++++|||+|||+++|+++|+++|++ |.|.++.+++. +|||||+|.+.++|.+|+ .+++.. |.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 346789999999999999999999999 99999998753 789999999999999999 787654 88999999
Q ss_pred EEcCCCC
Q 021488 136 SCAVPPK 142 (311)
Q Consensus 136 ~~a~~~~ 142 (311)
++++++.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9988754
No 104
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.5e-16 Score=115.13 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeE-EEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISS-LRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~-i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a 138 (311)
....+|||+|||+++++++|+++|.+ |.|.. |.|+.+ .+++++|||||+|.++++|.+||.+++..|+++.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 45679999999999999999999999 98887 888888 6899999999999999999999965999999999999998
Q ss_pred CCCC
Q 021488 139 VPPK 142 (311)
Q Consensus 139 ~~~~ 142 (311)
.++.
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7654
No 105
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.3e-16 Score=122.51 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=64.8
Q ss_pred CCceeecCCCCcccccccCCccccccccCccccCCCCCC-CCCCCCCCCCCcccCCCCCCCCcCCCCC---CccccccCC
Q 021488 210 RRTCYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRT-GNFADNAGLGTTNVSDNAGLSAVSGKIR---RRTCYECGE 285 (311)
Q Consensus 210 ~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Cy~Cg~ 285 (311)
...||+|++.||++++||... |+.|+.. ||++++|+....++.++..+|...++.. ...||+||+
T Consensus 4 ~~~C~~C~~~GH~~~~Cp~~~-----------C~~Cg~~~gH~~~~C~~~~~C~~Cg~~GH~~~~C~~~~~~~~C~~Cg~ 72 (124)
T 2lli_A 4 APKCNNCSQRGHLKKDCPHII-----------CSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHKWKKVQCTLCKS 72 (124)
T ss_dssp SSCCSSCSSSSCCTTTTTSCC-----------CTTTCCTTTCCTTTGGGSSCSSSSSCSSSSTTTSCCCCCCCSSSSSCS
T ss_pred CCcccCCCCCCcCcccCcCCc-----------CcCCCCcCCccCcccCCcccccccCCCCCccccCcCcccCccCCCCCc
Confidence 457999999999999999853 9999998 9999999987777777777776555443 478999999
Q ss_pred ccccCCCCCCcc
Q 021488 286 KGHLSSACPKKT 297 (311)
Q Consensus 286 ~gH~~~~Cp~~~ 297 (311)
.||++++||+..
T Consensus 73 ~GH~~~~Cp~~~ 84 (124)
T 2lli_A 73 KKHSKERCPSIW 84 (124)
T ss_dssp SCCCTTTCCCST
T ss_pred CCcchhhCCCcc
Confidence 999999999863
No 106
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.6e-17 Score=115.03 Aligned_cols=77 Identities=31% Similarity=0.380 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
+.++|||+|||+++++++|+++|++ |.|..+.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|++.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 5679999999999999999999999 99999999999989999999999999999999999 79999999999887764
No 107
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-15 Score=114.06 Aligned_cols=83 Identities=22% Similarity=0.287 Sum_probs=74.5
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
...+.++|||+|||+++++++|+++|++ |.|..+.|..+ +.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3446689999999999999999999999 99999999654 457899999999999999999 899999999999999
Q ss_pred EcCCCCCC
Q 021488 137 CAVPPKKG 144 (311)
Q Consensus 137 ~a~~~~~~ 144 (311)
++.++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4a_A 95 FPRSGRGT 102 (109)
T ss_dssp CCCCCCCC
T ss_pred EcccCCCC
Confidence 99886653
No 108
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=124.04 Aligned_cols=85 Identities=21% Similarity=0.284 Sum_probs=78.0
Q ss_pred CCcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeE--EEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCc----eeC
Q 021488 58 KIVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISS--LRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQE----VVR 129 (311)
Q Consensus 58 ~~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~--i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~----~i~ 129 (311)
......++|||+|||+++++++|+++|.+ |.|.. |+|+.++.++.++|||||+|.+. +|.+|+ .|++. .|.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34456789999999999999999999999 99966 99999999999999999999999 999999 89999 999
Q ss_pred CeEeEEEEcCCCCC
Q 021488 130 GRPVKISCAVPPKK 143 (311)
Q Consensus 130 g~~i~v~~a~~~~~ 143 (311)
|+.|+|.++.++..
T Consensus 97 gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 97 GKTINVEFAKGSKR 110 (131)
T ss_dssp GCCCCCEECCCSCC
T ss_pred CEEEEEEECCCCCC
Confidence 99999999987654
No 109
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.65 E-value=7.9e-16 Score=117.36 Aligned_cols=80 Identities=23% Similarity=0.351 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-Cc---eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEE
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CK---ISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKIS 136 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~---i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~ 136 (311)
....+|||+|||+++|+++|+++|+. |. |..|.|+.++. ++++|||||+|.+.++|.+||++++..|+|+.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEE
Confidence 45679999999999999999999999 87 89999999986 999999999999999999999999999999999999
Q ss_pred EcCCC
Q 021488 137 CAVPP 141 (311)
Q Consensus 137 ~a~~~ 141 (311)
++..+
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 97543
No 110
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.7e-15 Score=112.20 Aligned_cols=82 Identities=24% Similarity=0.436 Sum_probs=72.7
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
...+.++|||+|||+++++++|+++|++ |.| .++.+ .++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 3446789999999999999999999999 766 56666 58889999999999999999999 699999999999999
Q ss_pred EcCCCCCC
Q 021488 137 CAVPPKKG 144 (311)
Q Consensus 137 ~a~~~~~~ 144 (311)
++.++...
T Consensus 87 ~a~~~~~~ 94 (101)
T 2fc9_A 87 LQGPRGSP 94 (101)
T ss_dssp ECSSCCCC
T ss_pred EcCCCCCC
Confidence 99887653
No 111
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-15 Score=113.17 Aligned_cols=77 Identities=19% Similarity=0.275 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCC-----eEe
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRG-----RPV 133 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g-----~~i 133 (311)
....+|||+|||+++++++|+++|.+ |.|..+.|+.+ |||||+|.+.++|.+|| .|++..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45679999999999999999999999 99999999865 89999999999999999 699999999 999
Q ss_pred EEEEcCCCCCC
Q 021488 134 KISCAVPPKKG 144 (311)
Q Consensus 134 ~v~~a~~~~~~ 144 (311)
+|.++.++...
T Consensus 86 ~V~~a~~~~~~ 96 (108)
T 1x4c_A 86 RVKVDGPRSPS 96 (108)
T ss_dssp EEEESSCCSCC
T ss_pred EEEeCCCCCCC
Confidence 99999987654
No 112
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.64 E-value=5.8e-16 Score=120.76 Aligned_cols=79 Identities=24% Similarity=0.342 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-Cc---eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEE
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CK---ISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKIS 136 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~---i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~ 136 (311)
....+|||+|||+++|+++|+++|++ |. |.+|.|+.++. ++++|||||+|.+.++|.+||++++..|+|+.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 45679999999999999999999999 87 89999999986 999999999999999999999999999999999999
Q ss_pred EcCC
Q 021488 137 CAVP 140 (311)
Q Consensus 137 ~a~~ 140 (311)
++.+
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 9754
No 113
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=114.64 Aligned_cols=81 Identities=16% Similarity=0.338 Sum_probs=74.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCcee--------C
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVV--------R 129 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i--------~ 129 (311)
..+.++|||+|||+++++++|+++|.. |.|..+.|+.++ ++.++|||||+|.+.++|.+|+ .|++..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 345689999999999999999999999 999999999998 8999999999999999999999 7999998 5
Q ss_pred CeEeEEEEcCCC
Q 021488 130 GRPVKISCAVPP 141 (311)
Q Consensus 130 g~~i~v~~a~~~ 141 (311)
++.|.|.|+.++
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998754
No 114
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=8.4e-17 Score=125.92 Aligned_cols=124 Identities=14% Similarity=0.119 Sum_probs=73.9
Q ss_pred cceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHHHHhhccC-Cc
Q 021488 10 RGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFSD-CK 88 (311)
Q Consensus 10 kG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~ 88 (311)
+|++|.+|..++.+..++.--.....|...--.. . ....+.......+|||+|||+++|+++|+++|++ |
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~---g-----~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G- 71 (139)
T 2hgn_A 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGS---G-----DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN- 71 (139)
T ss_dssp ----------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-
T ss_pred CCcccccccCccccchhcccchhccCCCCCCCCC---C-----CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-
Confidence 3688999888887766663111112222110000 0 0011122335579999999999999999999999 8
Q ss_pred eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcCCCCC
Q 021488 89 ISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPPKK 143 (311)
Q Consensus 89 i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~~~~~ 143 (311)
|.+|.|+.++. ++++|||||+|.+.++|.+||++++..|+++.|+|.++.++..
T Consensus 72 i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 72 PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC
T ss_pred CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCC
Confidence 77999999985 9999999999999999999999999999999999999876554
No 115
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.64 E-value=1.5e-15 Score=116.84 Aligned_cols=83 Identities=20% Similarity=0.403 Sum_probs=77.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||..+++++|+++|++ |.|..+.|+.++ ++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 456689999999999999999999999 999999999998 8999999999999999999999 6999999999999999
Q ss_pred cCCCCC
Q 021488 138 AVPPKK 143 (311)
Q Consensus 138 a~~~~~ 143 (311)
+.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987654
No 116
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.2e-15 Score=110.50 Aligned_cols=79 Identities=13% Similarity=0.115 Sum_probs=70.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hc--CCceeCCeEeEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KL--DQEVVRGRPVKI 135 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l--~~~~i~g~~i~v 135 (311)
..++++|||+|||+.+++++|+++|++ |.|.++.++.+ +|||||+|.+.++|.+|+ .+ ++..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 346789999999999999999999999 99999988764 799999999999999999 55 577899999999
Q ss_pred EEcCCCCCC
Q 021488 136 SCAVPPKKG 144 (311)
Q Consensus 136 ~~a~~~~~~ 144 (311)
.++.++...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999876653
No 117
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=8.2e-16 Score=113.67 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCC--ceeCCeEeEE
Q 021488 61 EGYNRIYIGNLSW-DITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQ--EVVRGRPVKI 135 (311)
Q Consensus 61 ~~~~~l~V~~L~~-~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~--~~i~g~~i~v 135 (311)
.+.++|||+|||+ ++++++|+++|++ |.|.++.|+.+ +|||||+|.+.++|..|+ .|++ ..|.|+.|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3678999999999 9999999999999 99999999865 589999999999999999 6764 4699999999
Q ss_pred EEcCCCCC
Q 021488 136 SCAVPPKK 143 (311)
Q Consensus 136 ~~a~~~~~ 143 (311)
.++..++.
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99987554
No 118
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=1.3e-16 Score=115.68 Aligned_cols=79 Identities=33% Similarity=0.583 Sum_probs=71.7
Q ss_pred CEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCC
Q 021488 64 NRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPP 141 (311)
Q Consensus 64 ~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~ 141 (311)
++|||+|||.++++++|+++|++ |.|.++.++.++.++.++|||||+|.+.+ |.+|+ .|++..+.|+.|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999 99999999999989999999999999999 99999 79999999999999999876
Q ss_pred CC
Q 021488 142 KK 143 (311)
Q Consensus 142 ~~ 143 (311)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 119
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=120.04 Aligned_cols=80 Identities=21% Similarity=0.419 Sum_probs=74.8
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
...+.++|||+|||..+++++|+++|++ |.|..+.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3446789999999999999999999999 99999999999989999999999999999999999 799999999999998
Q ss_pred Ec
Q 021488 137 CA 138 (311)
Q Consensus 137 ~a 138 (311)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 85
No 120
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.8e-16 Score=115.40 Aligned_cols=82 Identities=24% Similarity=0.395 Sum_probs=74.6
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
...+.++|||+|||.++++++|+++|++ |.|..+.++.+. +.++|||||+|.+.++|.+|+ .|++..|.|+.|+|+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3446789999999999999999999999 999999999885 347999999999999999999 699999999999999
Q ss_pred EcCCCC
Q 021488 137 CAVPPK 142 (311)
Q Consensus 137 ~a~~~~ 142 (311)
++.++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 988764
No 121
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=9.8e-16 Score=114.89 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcCC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVP 140 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~~ 140 (311)
...+|||+|||+++++++|+++|+...|.+|.|+.++. ++++|||||+|.+.++|.+||.+++..|+|+.|.|..+.+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGLRVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTSCCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccCCeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 34689999999999999999999987789999999975 8999999999999999999999999999999999988754
No 122
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=115.61 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=70.9
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcC--CceeCCeEeEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLD--QEVVRGRPVKI 135 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~--~~~i~g~~i~v 135 (311)
..+.++|||+|||+++++++|+++|++ |.|.+|.|+.+ +|||||+|.+.++|.+|+ .++ +..|.|+.|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 346789999999999999999999999 99999999875 799999999999999999 676 46899999999
Q ss_pred EEcCCCCCC
Q 021488 136 SCAVPPKKG 144 (311)
Q Consensus 136 ~~a~~~~~~ 144 (311)
.++.++...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999877654
No 123
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.63 E-value=1.7e-16 Score=110.84 Aligned_cols=74 Identities=22% Similarity=0.420 Sum_probs=70.6
Q ss_pred EEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEc
Q 021488 65 RIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCA 138 (311)
Q Consensus 65 ~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a 138 (311)
+|||+|||+++++++|+++|++ |.|.++.++.++.++.++|||||+|.++++|.+|+++++..+.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5999999999999999999999 9999999999998999999999999999999999977889999999999875
No 124
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=113.13 Aligned_cols=80 Identities=14% Similarity=0.097 Sum_probs=70.2
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCC--ceeCCeEeE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQ--EVVRGRPVK 134 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~--~~i~g~~i~ 134 (311)
...++++|||+|||+++++++|+++|++ |.|..|.++.+ +|||||+|.+.++|.+|+ .|++ ..|.|+.|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999 99999998754 799999999999999999 6754 459999999
Q ss_pred EEEcCCCCCC
Q 021488 135 ISCAVPPKKG 144 (311)
Q Consensus 135 v~~a~~~~~~ 144 (311)
|.++..+...
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9999876653
No 125
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.7e-16 Score=110.40 Aligned_cols=74 Identities=23% Similarity=0.443 Sum_probs=70.4
Q ss_pred CEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 64 NRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 64 ~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
++|||+|||+++++++|+++|++ |.|..+.++.++.++.++|||||+|.+.++|.+|+ .++ ..+.|+.|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 37999999999999999999999 99999999999989999999999999999999999 677 9999999999986
No 126
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=113.60 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCC------CHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCe-
Q 021488 61 EGYNRIYIGNLSWDI------TEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGR- 131 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~------t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~- 131 (311)
...++|||+|||+.+ ++++|+++|++ |.|..+.|+ +.++.++|||||+|.+.++|.+|+ .|++..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 346799999999999 78999999999 999999988 458899999999999999999999 7999999998
Q ss_pred EeEEEEcCCCC
Q 021488 132 PVKISCAVPPK 142 (311)
Q Consensus 132 ~i~v~~a~~~~ 142 (311)
.|+|.++....
T Consensus 91 ~l~V~~a~~~~ 101 (105)
T 2nlw_A 91 TFRVNLFTDFD 101 (105)
T ss_dssp EEEEECSCCCC
T ss_pred eEEEEEcchHh
Confidence 99999987654
No 127
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9.3e-16 Score=118.03 Aligned_cols=81 Identities=14% Similarity=0.226 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcC
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~ 139 (311)
....+|||+|||+++++++|+++|.. |.|..+.++.+..++.++|||||+|.+.++|.+||++++..|+|+.|.|.++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 45579999999999999999999999 99988666677779999999999999999999999999999999999999986
Q ss_pred CC
Q 021488 140 PP 141 (311)
Q Consensus 140 ~~ 141 (311)
++
T Consensus 103 ~~ 104 (124)
T 1wel_A 103 KK 104 (124)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 128
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.7e-15 Score=107.82 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=70.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||+++++++|+++|++ |.|..+.++ ++||||+|.+.++|.+|+ .|++..|.|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 345689999999999999999999999 999999997 449999999999999999 7999999999999999
Q ss_pred cCCCCCC
Q 021488 138 AVPPKKG 144 (311)
Q Consensus 138 a~~~~~~ 144 (311)
+.++...
T Consensus 79 a~~~~~~ 85 (92)
T 2dgt_A 79 STSRLRT 85 (92)
T ss_dssp SSCCCSC
T ss_pred ccCCCCC
Confidence 9887653
No 129
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.3e-16 Score=111.98 Aligned_cols=69 Identities=23% Similarity=0.442 Sum_probs=45.5
Q ss_pred cCCceeecCCCCcccccccCCccccccccCccccCCCCCCCCCCCCCCCCCcccCCCCCCCCcCCCCCCccccccCCccc
Q 021488 209 RRRTCYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRTGNFADNAGLGTTNVSDNAGLSAVSGKIRRRTCYECGEKGH 288 (311)
Q Consensus 209 ~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~gH 288 (311)
+...||+|++.||++++||+... ||.|+..||++++|+.. .....||+||+.||
T Consensus 4 k~~~C~~Cg~~GH~~~~Cp~~~r----------cY~c~~~gh~~~~c~~p----------------~~~~~CYnCG~~GH 57 (83)
T 3nyb_B 4 KKVQCTLCKSKKHSKERCPSIWR----------AYILVDDNEKAKPKVLP----------------FHTIYCYNCGGKGH 57 (83)
T ss_dssp ---CCSSSCCSSSCGGGCGGGTC----------CCCBC-----------------------------CCCBCSSSSCBSS
T ss_pred ccCCCCCCCCCCCccccCCCccc----------ccccccCCcccccccCC----------------CCCCeecccCCCCc
Confidence 35679999999999999998642 99999999999988632 23478999999999
Q ss_pred cCCCCCCccccccCC
Q 021488 289 LSSACPKKTADQTNS 303 (311)
Q Consensus 289 ~~~~Cp~~~~~~~~~ 303 (311)
|++|||+......++
T Consensus 58 ~~rdC~~~r~s~~p~ 72 (83)
T 3nyb_B 58 FGDDCKEKRSSRVPN 72 (83)
T ss_dssp CGGGCSSCCSCSSCC
T ss_pred CcccCCccccCcCCC
Confidence 999999986555443
No 130
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-15 Score=108.55 Aligned_cols=76 Identities=22% Similarity=0.435 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
.+.++|||+|||.++++++|+++|++ |.|..+.++ +|||||+|.+.++|.+|+ .|++..|.|+.|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 45689999999999999999999999 999999987 689999999999999999 79999999999999999
Q ss_pred CCCCCC
Q 021488 139 VPPKKG 144 (311)
Q Consensus 139 ~~~~~~ 144 (311)
.++...
T Consensus 78 ~~~~~~ 83 (90)
T 2dnq_A 78 KNKSKA 83 (90)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 887653
No 131
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=8.8e-16 Score=113.91 Aligned_cols=81 Identities=19% Similarity=0.432 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcC
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~ 139 (311)
...++|||+|||+++++++|+++|+. |.|..+.|+.++ ++.++|||||+|.+.++|.+|+. ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 34579999999999999999999999 999999999998 99999999999999999999999 9999999999999998
Q ss_pred CCCC
Q 021488 140 PPKK 143 (311)
Q Consensus 140 ~~~~ 143 (311)
++..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 7654
No 132
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.9e-16 Score=116.44 Aligned_cols=81 Identities=28% Similarity=0.336 Sum_probs=71.7
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-Cce----eEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEe
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKI----SSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPV 133 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i----~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i 133 (311)
..+.++|||+|||+++++++|+++|.+ |.| ..+.+. ++.++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 346689999999999999999999999 888 444444 7888999999999999999999 799999999999
Q ss_pred EEEEcCCCCCC
Q 021488 134 KISCAVPPKKG 144 (311)
Q Consensus 134 ~v~~a~~~~~~ 144 (311)
+|.++.++...
T Consensus 98 ~v~~a~~~~~~ 108 (115)
T 2cpx_A 98 VIEFGKNKKQR 108 (115)
T ss_dssp EEEECCCCSCC
T ss_pred EEEEccCCCCC
Confidence 99999887653
No 133
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=1.2e-15 Score=114.58 Aligned_cols=78 Identities=24% Similarity=0.313 Sum_probs=68.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-C-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-C-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g-~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
...+|||+|||+++++++|+++|++ | .|..+.|... .++|||||+|.+.++|.+|| .|++..|.|+.|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3469999999999999999999999 9 8999988632 46899999999999999999 79999999999999998
Q ss_pred CCCCC
Q 021488 139 VPPKK 143 (311)
Q Consensus 139 ~~~~~ 143 (311)
...+.
T Consensus 103 ~~~p~ 107 (111)
T 2jvr_A 103 DNPPP 107 (111)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 76543
No 134
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.4e-15 Score=110.46 Aligned_cols=78 Identities=14% Similarity=0.225 Sum_probs=71.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeC--CeEeEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVR--GRPVKI 135 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~--g~~i~v 135 (311)
..+.++|||+|||+++++++|+++|++ |.|.++.+..+ +|||||+|.+.++|.+|+ .|++..|. ++.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 345689999999999999999999999 99999998754 789999999999999999 69999999 999999
Q ss_pred EEcCCCCC
Q 021488 136 SCAVPPKK 143 (311)
Q Consensus 136 ~~a~~~~~ 143 (311)
.++.+++.
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99988764
No 135
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.6e-15 Score=107.47 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=66.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
.+.-|||+||++.+|+++|+++|.+ |+|.++.+.. ++|||||+|.++++|.+|+ .||+..+.|+.|+|.+|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 3568999999999999999999999 9999999875 4899999999999999999 89999999999999997
No 136
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.61 E-value=1.8e-16 Score=117.42 Aligned_cols=82 Identities=24% Similarity=0.261 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcC
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~ 139 (311)
.+..+|||+|||+++++++|+++|++ |.|.. .++.+..++.++|||||+|.+.++|.+||+|++..|.|+.|+|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 35679999999999999999999999 88777 66677678889999999999999999999999999999999999998
Q ss_pred CCCC
Q 021488 140 PPKK 143 (311)
Q Consensus 140 ~~~~ 143 (311)
++..
T Consensus 94 ~~~~ 97 (101)
T 1fj7_A 94 GRDG 97 (101)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7665
No 137
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=4.7e-15 Score=110.19 Aligned_cols=77 Identities=25% Similarity=0.434 Sum_probs=70.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||+++++++|+++|.+ |.|..+.++ ++||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 345689999999999999999999999 999999987 569999999999999999 6999999999999999
Q ss_pred cCCCCCC
Q 021488 138 AVPPKKG 144 (311)
Q Consensus 138 a~~~~~~ 144 (311)
+.++...
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 9887654
No 138
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.9e-15 Score=110.52 Aligned_cols=78 Identities=26% Similarity=0.492 Sum_probs=71.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||+.+++++|+++|++ |.|..+.+..+ +|||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 346689999999999999999999999 99999999854 789999999999999999 8999999999999999
Q ss_pred cCCCCC
Q 021488 138 AVPPKK 143 (311)
Q Consensus 138 a~~~~~ 143 (311)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 987654
No 139
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.3e-15 Score=106.85 Aligned_cols=75 Identities=23% Similarity=0.368 Sum_probs=68.5
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hc-CCceeCCeEeEE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KL-DQEVVRGRPVKI 135 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l-~~~~i~g~~i~v 135 (311)
...+.++|||+|||.++++++|+++|++ |.|..+.++.+ +|||||+|.+.++|.+|+ .| ++..+.|+.|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3446689999999999999999999999 99999999864 799999999999999999 68 999999999999
Q ss_pred EEcC
Q 021488 136 SCAV 139 (311)
Q Consensus 136 ~~a~ 139 (311)
+|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 140
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=116.11 Aligned_cols=81 Identities=20% Similarity=0.275 Sum_probs=72.0
Q ss_pred cCCCCEEEEcCCCCCCCHHHHH----hhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEe
Q 021488 60 VEGYNRIYIGNLSWDITEEDLK----KLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPV 133 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~----~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i 133 (311)
..+..+|||+|||+.+++++|+ ++|++ |.|.+|.+.. ++.++|||||+|.+.++|..|+ .|++..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3456899999999999999876 68999 9999988753 6778999999999999999999 899999999999
Q ss_pred EEEEcCCCCC
Q 021488 134 KISCAVPPKK 143 (311)
Q Consensus 134 ~v~~a~~~~~ 143 (311)
+|.|+.++..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987653
No 141
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.61 E-value=1.4e-15 Score=129.51 Aligned_cols=80 Identities=25% Similarity=0.400 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-C--ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-C--KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g--~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
...+|||+|||+++|+++|+++|++ | .|.+|.|+.++.+++++|||||+|.+.++|.+|| .|++..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 4568999999999999999999999 9 9999999999999999999999999999999999 6999999999999999
Q ss_pred cCCC
Q 021488 138 AVPP 141 (311)
Q Consensus 138 a~~~ 141 (311)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8653
No 142
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.7e-15 Score=111.37 Aligned_cols=78 Identities=22% Similarity=0.348 Sum_probs=72.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
...++|||+|||..+++++|+++|++ |.|..+.|+.+ +|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35679999999999999999999999 99999999875 789999999999999999 89999999999999999
Q ss_pred CCCCCC
Q 021488 139 VPPKKG 144 (311)
Q Consensus 139 ~~~~~~ 144 (311)
.+++..
T Consensus 97 ~~~~~~ 102 (109)
T 1x4g_A 97 KESPDM 102 (109)
T ss_dssp CCCCSS
T ss_pred CCCCCC
Confidence 887653
No 143
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.60 E-value=1e-15 Score=117.54 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccCCcee--EEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSDCKIS--SLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~g~i~--~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a 138 (311)
....+|||+|||+++|+++|+++|+...|. +|.|+.++. ++++|||||+|.++++|.+||++++..|+|+.|+|.++
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 456789999999999999999999995566 899999986 99999999999999999999977789999999999987
Q ss_pred CC
Q 021488 139 VP 140 (311)
Q Consensus 139 ~~ 140 (311)
.+
T Consensus 119 ~~ 120 (126)
T 2hgm_A 119 SQ 120 (126)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 144
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.5e-15 Score=106.98 Aligned_cols=75 Identities=21% Similarity=0.411 Sum_probs=69.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
.+.++|||+|||+++++++|+++|++ |.|..+.++ ++||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 35679999999999999999999999 999999997 449999999999999999 79999999999999999
Q ss_pred CCCCC
Q 021488 139 VPPKK 143 (311)
Q Consensus 139 ~~~~~ 143 (311)
.++..
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 145
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.60 E-value=5.2e-16 Score=116.25 Aligned_cols=80 Identities=24% Similarity=0.309 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-Cc---eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEE
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CK---ISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKIS 136 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~---i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~ 136 (311)
....+|||+|||+++|+++|+++|+. |. |..|.|+.++. +.++|||||+|.+.++|.+||.+++..|+|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 35679999999999999999999999 87 89999999986 999999999999999999999999999999999999
Q ss_pred EcCCC
Q 021488 137 CAVPP 141 (311)
Q Consensus 137 ~a~~~ 141 (311)
++.++
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 97653
No 146
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=3.2e-15 Score=112.10 Aligned_cols=76 Identities=18% Similarity=0.438 Sum_probs=70.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+.++|||+|||.++++++|+++|++ |.|..+.+. +|||||+|.+.++|.+|+ .|++..|.|+.|+|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 446689999999999999999999999 999999987 789999999999999999 7999999999999999
Q ss_pred cCCCCC
Q 021488 138 AVPPKK 143 (311)
Q Consensus 138 a~~~~~ 143 (311)
+.+++.
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 988665
No 147
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.60 E-value=3.4e-15 Score=109.44 Aligned_cols=78 Identities=24% Similarity=0.410 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
.+.++|||+|||+.+++++|+++|.. |.|..+ ..++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 35689999999999999999999999 877665 347788999999999999999999 69999999999999999
Q ss_pred CCCCC
Q 021488 139 VPPKK 143 (311)
Q Consensus 139 ~~~~~ 143 (311)
.++..
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 87654
No 148
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=1.7e-15 Score=111.28 Aligned_cols=81 Identities=27% Similarity=0.375 Sum_probs=72.8
Q ss_pred cCCCCEEEEcCCCCCCCHHHHH----hhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEe
Q 021488 60 VEGYNRIYIGNLSWDITEEDLK----KLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPV 133 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~----~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i 133 (311)
..+.++|||+|||.++++++|+ ++|++ |.|..+.+.. ++.++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 3466899999999999999999 99999 9999998873 5677899999999999999999 799999999999
Q ss_pred EEEEcCCCCC
Q 021488 134 KISCAVPPKK 143 (311)
Q Consensus 134 ~v~~a~~~~~ 143 (311)
+|.++.++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987654
No 149
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.59 E-value=7.2e-15 Score=107.98 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=68.9
Q ss_pred cCCCCEEEEcCCCC-CCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 60 VEGYNRIYIGNLSW-DITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 60 ~~~~~~l~V~~L~~-~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
..+.++|||+|||+ ++++++|+++|++ |.|..+.+. +|||||+|.+.++|.+|+ .|++..+.|+.|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34678999999998 9999999999999 999999983 789999999999999999 799999999999999
Q ss_pred EcCCCC
Q 021488 137 CAVPPK 142 (311)
Q Consensus 137 ~a~~~~ 142 (311)
++.++.
T Consensus 91 ~a~~~~ 96 (97)
T 2xnq_A 91 VSSSNA 96 (97)
T ss_dssp ECCCCC
T ss_pred ecCCCC
Confidence 987653
No 150
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=8.5e-17 Score=122.39 Aligned_cols=84 Identities=29% Similarity=0.437 Sum_probs=78.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeE--------EEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCC
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISS--------LRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRG 130 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~--------i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g 130 (311)
.+.++|||+|||.++++++|+++|++ |.|.. +.|+.++.++.++|||||+|.+.++|.+|+ .|++..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35679999999999999999999999 99998 899999889999999999999999999999 699999999
Q ss_pred eEeEEEEcCCCCCC
Q 021488 131 RPVKISCAVPPKKG 144 (311)
Q Consensus 131 ~~i~v~~a~~~~~~ 144 (311)
+.|+|.++.+++..
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999887664
No 151
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=99.59 E-value=6.8e-16 Score=106.13 Aligned_cols=66 Identities=24% Similarity=0.555 Sum_probs=40.1
Q ss_pred CCchhhhhhcccCCCccccccccccccccCcccCCceeecCCCCcccccccCCccccccccCccccCCCCCCCCCCCCCC
Q 021488 177 SGAVTSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRTGNFADNAG 256 (311)
Q Consensus 177 ~gh~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 256 (311)
.||++++|+........ ....+...||+||+.||++++||....
T Consensus 2 ~gh~~rdc~~~~~~~~~-----------~~~~r~~~C~~Cg~~GH~a~~C~~~~~------------------------- 45 (74)
T 2li8_A 2 SGLVPRGSHMPKGKSMQ-----------KRRSKGDRCYNCGGLDHHAKECKLPPQ------------------------- 45 (74)
T ss_dssp ----------CCCCCCC-----------SCCSTTSCCTTTCCSSSCTTTCSSCCC-------------------------
T ss_pred CccccCcCCCCCcCccc-----------cccCCCCcccccCCcCcCcccCCCCCC-------------------------
Confidence 58889999776443210 111345679999999999999987531
Q ss_pred CCCcccCCCCCCCCcCCCCCCccccccCCccccCCCCCCccc
Q 021488 257 LGTTNVSDNAGLSAVSGKIRRRTCYECGEKGHLSSACPKKTA 298 (311)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~gH~~~~Cp~~~~ 298 (311)
...||+||++||++++||+...
T Consensus 46 --------------------~~~C~~Cg~~GH~ar~Cp~~~~ 67 (74)
T 2li8_A 46 --------------------PKKCHFCQSISHMVASCPLKAQ 67 (74)
T ss_dssp --------------------CCCCTTTCCTTSCGGGCTTGGG
T ss_pred --------------------CCccCCcCCcCCccCcCcCCcC
Confidence 2579999999999999999854
No 152
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=5.8e-15 Score=111.03 Aligned_cols=74 Identities=27% Similarity=0.499 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCC-CCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 62 GYNRIYIGNLSWD-ITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 62 ~~~~l~V~~L~~~-~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
..++|||+|||+. +++++|+++|++ |.|..+.+ ++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999999 999999999999 99999998 3789999999999999999 89999999999999999
Q ss_pred CCCCC
Q 021488 139 VPPKK 143 (311)
Q Consensus 139 ~~~~~ 143 (311)
.++..
T Consensus 98 ~~~~~ 102 (110)
T 1wf1_A 98 GEPKP 102 (110)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 86443
No 153
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=6e-15 Score=110.63 Aligned_cols=78 Identities=19% Similarity=0.125 Sum_probs=69.1
Q ss_pred cCCCCEEEEcCCCCC-CCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcC--CceeCCeEeE
Q 021488 60 VEGYNRIYIGNLSWD-ITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLD--QEVVRGRPVK 134 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~-~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~--~~~i~g~~i~ 134 (311)
..+.++|||+|||++ +++++|+++|++ |.|.++.|++. +|||||+|.+.++|..|+ .|+ +..|.|+.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446789999999998 999999999999 99999999743 799999999999999999 664 5569999999
Q ss_pred EEEcCCCCC
Q 021488 135 ISCAVPPKK 143 (311)
Q Consensus 135 v~~a~~~~~ 143 (311)
|.++..+..
T Consensus 96 V~~a~~~~~ 104 (112)
T 1x4f_A 96 VDLSEKYKK 104 (112)
T ss_dssp EEEECSCSS
T ss_pred EEECccccc
Confidence 999977654
No 154
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.7e-15 Score=116.06 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-Cce----eEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEE
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKI----SSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKIS 136 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i----~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~ 136 (311)
...+|||+|||+++|+++|+++|++ |.| ..|.|+.+. +++++|||||+|.+.++|.+||++++..|+++.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEE
Confidence 4579999999999999999999999 865 689999985 8999999999999999999999669999999999998
Q ss_pred EcCC
Q 021488 137 CAVP 140 (311)
Q Consensus 137 ~a~~ 140 (311)
.+.+
T Consensus 101 ~a~~ 104 (123)
T 2dha_A 101 RSTA 104 (123)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 155
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=1.6e-15 Score=107.62 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=64.9
Q ss_pred CEEEEcCCCCCC------CHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCe-EeE
Q 021488 64 NRIYIGNLSWDI------TEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGR-PVK 134 (311)
Q Consensus 64 ~~l~V~~L~~~~------t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~-~i~ 134 (311)
++|||+|||..+ ++++|+++|++ |.|.++.++ +.++.++|||||+|.+.++|.+|+ .|++..|.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 77999999999 999999987 458899999999999999999999 7999999999 887
Q ss_pred E
Q 021488 135 I 135 (311)
Q Consensus 135 v 135 (311)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 156
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=6e-15 Score=108.36 Aligned_cols=78 Identities=22% Similarity=0.302 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
...++|||+|||+.+++++|+++|++ |.|. +.++.+ .++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45679999999999999999999999 9886 566543 56899999999999999999 89999999999999999
Q ss_pred CCCCC
Q 021488 139 VPPKK 143 (311)
Q Consensus 139 ~~~~~ 143 (311)
.+++.
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87653
No 157
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=4e-15 Score=110.15 Aligned_cols=74 Identities=20% Similarity=0.305 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~ 139 (311)
..++|||+|||.++++++|+++|++ |.|.++.+.. ++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 4579999999999999999999999 9999999873 4899999999999999999 799999999999999987
Q ss_pred CC
Q 021488 140 PP 141 (311)
Q Consensus 140 ~~ 141 (311)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 158
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=3.4e-15 Score=110.48 Aligned_cols=76 Identities=25% Similarity=0.426 Sum_probs=70.7
Q ss_pred CEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCC
Q 021488 64 NRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPP 141 (311)
Q Consensus 64 ~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~ 141 (311)
++|||+|||+++++++|+++|++ |.|..+.++.+ ++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 37999999999999999999999 99999999876 5899999999999999999 69999999999999999887
Q ss_pred CCC
Q 021488 142 KKG 144 (311)
Q Consensus 142 ~~~ 144 (311)
+..
T Consensus 76 ~~~ 78 (101)
T 2hvz_A 76 PRR 78 (101)
T ss_dssp CCS
T ss_pred CCc
Confidence 653
No 159
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.57 E-value=1.2e-14 Score=122.38 Aligned_cols=82 Identities=30% Similarity=0.435 Sum_probs=76.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
.+.++|||+|||+++|+++|+++|++ |.|.+|.|++++.++.++|||||+|.+.++|.+|+ .+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 35679999999999999999999999 99999999999999999999999999999999999 79999999999999998
Q ss_pred CCCC
Q 021488 139 VPPK 142 (311)
Q Consensus 139 ~~~~ 142 (311)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 6544
No 160
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.7e-14 Score=104.49 Aligned_cols=77 Identities=27% Similarity=0.459 Sum_probs=68.6
Q ss_pred CcCCCCEEEEcCCCCCCCHHHHHhhccC---CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeE
Q 021488 59 IVEGYNRIYIGNLSWDITEEDLKKLFSD---CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVK 134 (311)
Q Consensus 59 ~~~~~~~l~V~~L~~~~t~~~l~~~f~~---g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~ 134 (311)
...+.++|||+|||+.+++++|+++|++ |.|..+.+. +|||||+|.+.++|.+|+ .|++..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3456789999999999999999999998 467777764 679999999999999999 6999999999999
Q ss_pred EEEcCCCCC
Q 021488 135 ISCAVPPKK 143 (311)
Q Consensus 135 v~~a~~~~~ 143 (311)
|.++.++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999988765
No 161
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2e-14 Score=104.89 Aligned_cols=78 Identities=15% Similarity=0.299 Sum_probs=69.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcCC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVP 140 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~~ 140 (311)
..++|||+|||+++++++|+++|++ |.|.+| +.++.++. ||||+|.+.++|.+|++|++..|.|+.|+|.++.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 4579999999999999999999999 999987 55555554 99999999999999999999999999999998876
Q ss_pred CCCC
Q 021488 141 PKKG 144 (311)
Q Consensus 141 ~~~~ 144 (311)
+...
T Consensus 82 ~~~~ 85 (94)
T 2e5g_A 82 KEFQ 85 (94)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 162
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.4e-15 Score=107.29 Aligned_cols=77 Identities=32% Similarity=0.498 Sum_probs=68.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-Cc-eeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCC-ceeCCeEeEEE
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CK-ISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQ-EVVRGRPVKIS 136 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~-i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~-~~i~g~~i~v~ 136 (311)
.+.++|||+|||+++++++|+++|++ |. |..+.+. ++|||||+|.+.++|.+|+ .|++ ..|.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 35679999999999999999999999 88 6665553 3789999999999999999 7999 99999999999
Q ss_pred EcCCCCCC
Q 021488 137 CAVPPKKG 144 (311)
Q Consensus 137 ~a~~~~~~ 144 (311)
++.++...
T Consensus 79 ~a~~~~~~ 86 (93)
T 2cqh_A 79 YSVSKKLR 86 (93)
T ss_dssp ECCCCCCC
T ss_pred EccCcccc
Confidence 99887653
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.56 E-value=1.8e-14 Score=119.24 Aligned_cols=84 Identities=24% Similarity=0.402 Sum_probs=76.6
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEc
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCA 138 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a 138 (311)
....++|||+|||+++++++|+++|+. |.|.++.|+.++.++.++|||||+|.+.++|.+||++++..|.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 346689999999999999999999999 9999999999999999999999999999999999977999999999999998
Q ss_pred CCCCC
Q 021488 139 VPPKK 143 (311)
Q Consensus 139 ~~~~~ 143 (311)
.++..
T Consensus 90 ~~~~~ 94 (196)
T 1l3k_A 90 VSRED 94 (196)
T ss_dssp CC---
T ss_pred cCccc
Confidence 77654
No 164
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.56 E-value=2.3e-14 Score=115.31 Aligned_cols=80 Identities=25% Similarity=0.440 Sum_probs=76.0
Q ss_pred CCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCC
Q 021488 63 YNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVP 140 (311)
Q Consensus 63 ~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~ 140 (311)
.++|||+|||+++++++|+++|+. |.|.++.++.++.++.++|||||+|.++++|.+|+ .+++..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 479999999999999999999999 99999999999989999999999999999999999 6999999999999999876
Q ss_pred CC
Q 021488 141 PK 142 (311)
Q Consensus 141 ~~ 142 (311)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 165
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=6.3e-15 Score=108.03 Aligned_cols=75 Identities=23% Similarity=0.438 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 61 EGYNRIYIGNLSW-DITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 61 ~~~~~l~V~~L~~-~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
.+.++|||+|||+ .+++++|+++|++ |.|..+.+. +|||||+|.+.++|.+|+ .|++..+.|+.|+|++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 3567999999998 9999999999999 999999984 789999999999999999 6999999999999999
Q ss_pred cCCCCC
Q 021488 138 AVPPKK 143 (311)
Q Consensus 138 a~~~~~ 143 (311)
+.++..
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987665
No 166
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.56 E-value=9.5e-15 Score=110.72 Aligned_cols=80 Identities=28% Similarity=0.368 Sum_probs=72.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
.+.++|||+|||+.+++++|+++|+. |.|..+.++.+. .++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 35679999999999999999999999 999999998653 45899999999999999999 69999999999999998
Q ss_pred CCCCC
Q 021488 139 VPPKK 143 (311)
Q Consensus 139 ~~~~~ 143 (311)
.++..
T Consensus 83 ~~~~~ 87 (115)
T 3lqv_A 83 NANRA 87 (115)
T ss_dssp CHHHH
T ss_pred cCChh
Confidence 76543
No 167
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=1e-14 Score=119.08 Aligned_cols=82 Identities=21% Similarity=0.406 Sum_probs=76.3
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
..+..+|||+|||+.+++++|+++|++ |.|..|.|+.++ ++.++|||||+|.+.++|.+|+ .|++..|.|+.|+|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345679999999999999999999999 999999999998 8999999999999999999999 6999999999999999
Q ss_pred cCCCC
Q 021488 138 AVPPK 142 (311)
Q Consensus 138 a~~~~ 142 (311)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 87654
No 168
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.55 E-value=2e-14 Score=115.88 Aligned_cols=82 Identities=29% Similarity=0.436 Sum_probs=77.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~ 139 (311)
+.++|||+|||+++++++|+++|++ |.|.++.++.++.++.++|||||+|.++++|.+|+ .+++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4579999999999999999999999 99999999999889999999999999999999999 699999999999999988
Q ss_pred CCCC
Q 021488 140 PPKK 143 (311)
Q Consensus 140 ~~~~ 143 (311)
+...
T Consensus 82 ~~~~ 85 (168)
T 1b7f_A 82 PGGE 85 (168)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 7654
No 169
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.54 E-value=2.5e-14 Score=103.34 Aligned_cols=77 Identities=23% Similarity=0.424 Sum_probs=62.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcC
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~ 139 (311)
.+..+|||+|||+++|+++|+++|++ |.|.++.|+.+ ++|||||+|.+.++|.++... ...+.++.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEEEcC
Confidence 35679999999999999999999999 99999999875 599999999999999853322 345679999999998
Q ss_pred CCCC
Q 021488 140 PPKK 143 (311)
Q Consensus 140 ~~~~ 143 (311)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7654
No 170
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.1e-14 Score=108.56 Aligned_cols=76 Identities=11% Similarity=0.058 Sum_probs=68.0
Q ss_pred CEEEEcCC----CCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecC----HHH----HHHHHh---cCCce
Q 021488 64 NRIYIGNL----SWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSD----SLS----LSMALK---LDQEV 127 (311)
Q Consensus 64 ~~l~V~~L----~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~----~~~----a~~al~---l~~~~ 127 (311)
..|||+|| |+++++.+|+++|+. |+|.++.++.|+.|+.++||+||+|.+ +++ |.+|+. +++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 999999999999999 999999999999999999999999995 333 677763 79999
Q ss_pred eCCeEeEEEEcC
Q 021488 128 VRGRPVKISCAV 139 (311)
Q Consensus 128 i~g~~i~v~~a~ 139 (311)
|+|+.|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999854
No 171
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.3e-14 Score=107.59 Aligned_cols=78 Identities=12% Similarity=0.186 Sum_probs=69.5
Q ss_pred CCCCEEEE--cCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCcee-----CCe
Q 021488 61 EGYNRIYI--GNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVV-----RGR 131 (311)
Q Consensus 61 ~~~~~l~V--~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i-----~g~ 131 (311)
.++++||| +||++++++++|+++|++ |.|.+|.|+.+ +|||||+|.+.++|.+|+ .||+..| .++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 46689999 779999999999999999 99999987642 799999999999999999 7999988 789
Q ss_pred EeEEEEcCCCCCC
Q 021488 132 PVKISCAVPPKKG 144 (311)
Q Consensus 132 ~i~v~~a~~~~~~ 144 (311)
.|.|.++...+..
T Consensus 97 ~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 97 TLYLNFVEKVQWS 109 (114)
T ss_dssp ECEEEEESCCCCS
T ss_pred EEEEEecccCccc
Confidence 9999999876653
No 172
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1e-13 Score=101.75 Aligned_cols=76 Identities=24% Similarity=0.227 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
.+.++|||+|| ++++++|+++|.+ |.|..+.|. .++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45689999996 8999999999999 999999985 35899999999999999999 89999999999999999
Q ss_pred CCCCCC
Q 021488 139 VPPKKG 144 (311)
Q Consensus 139 ~~~~~~ 144 (311)
.+++..
T Consensus 85 ~~~~~~ 90 (97)
T 1x5p_A 85 RKQPML 90 (97)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 887653
No 173
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.7e-14 Score=104.54 Aligned_cols=77 Identities=21% Similarity=0.209 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEE-EeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLR-FGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~-v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
..++|||+|||+++++++|+++|++ |.|..++ |+.++.+ |.|||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4579999999999999999999999 9999994 8777544 34999999999999999 79999999999999999
Q ss_pred CCCC
Q 021488 139 VPPK 142 (311)
Q Consensus 139 ~~~~ 142 (311)
.++.
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8874
No 174
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2.2e-14 Score=108.04 Aligned_cols=75 Identities=17% Similarity=0.112 Sum_probs=68.8
Q ss_pred CCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCC
Q 021488 63 YNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVP 140 (311)
Q Consensus 63 ~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~ 140 (311)
.++|||+|||+.+++++|+++|++ |.|..+.|+. .+|||||+|.+.++|.+|+ .|++..|.|+.|.|+|+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 468999999999999999999999 9999998874 4789999999999999999 7999999999999999976
Q ss_pred CCC
Q 021488 141 PKK 143 (311)
Q Consensus 141 ~~~ 143 (311)
...
T Consensus 84 ~~~ 86 (111)
T 1whx_A 84 GVF 86 (111)
T ss_dssp TTT
T ss_pred Ccc
Confidence 543
No 175
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=6.6e-15 Score=116.11 Aligned_cols=80 Identities=29% Similarity=0.489 Sum_probs=70.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeE--------EEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCC
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISS--------LRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRG 130 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~--------i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g 130 (311)
.+..+|||+|||+++++++|+++|+. |.|.. +.+. .++.++|||||+|.+.++|.+|+ .|++..|.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 45689999999999999999999999 97765 3333 36788999999999999999999 699999999
Q ss_pred eEeEEEEcCCCCC
Q 021488 131 RPVKISCAVPPKK 143 (311)
Q Consensus 131 ~~i~v~~a~~~~~ 143 (311)
+.|+|.++.+...
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999987554
No 176
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.52 E-value=4.6e-14 Score=101.67 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=66.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSDCKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVP 140 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~ 140 (311)
..++|||+|||+++++++|+++|++..|.++.+. .++|||||+|.+.++|.+|+ .|++..+.|+.|+|+++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSSCCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4578999999999999999999998667777774 56899999999999999999 7999999999999999865
Q ss_pred CC
Q 021488 141 PK 142 (311)
Q Consensus 141 ~~ 142 (311)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 177
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.52 E-value=3.6e-14 Score=131.68 Aligned_cols=83 Identities=20% Similarity=0.443 Sum_probs=78.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
.+..+|||+|||+.+|+++|.++|.+ |.|..|.|+.+..++.++|||||+|.+.++|.+|| .|++..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35579999999999999999999999 99999999999989999999999999999999999 89999999999999999
Q ss_pred CCCCC
Q 021488 139 VPPKK 143 (311)
Q Consensus 139 ~~~~~ 143 (311)
.++..
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87653
No 178
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=5e-14 Score=101.42 Aligned_cols=77 Identities=26% Similarity=0.471 Sum_probs=67.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcCC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVP 140 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~~ 140 (311)
+.++|||+|||+++++++|+++|++ |.|.++.|+.+ ++|||||+|.+.++|.+++.. ...+.++.|+|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 5689999999999999999999999 99999999865 589999999999999876533 4567999999999988
Q ss_pred CCCC
Q 021488 141 PKKG 144 (311)
Q Consensus 141 ~~~~ 144 (311)
+...
T Consensus 78 ~~~~ 81 (88)
T 1wf0_A 78 KHNS 81 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 179
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.51 E-value=1.5e-13 Score=105.50 Aligned_cols=75 Identities=21% Similarity=0.288 Sum_probs=68.0
Q ss_pred CEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeE-EEEEecCHHHHHHHH-hcCCceeCC--eEeEEEEc
Q 021488 64 NRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGY-AHVDFSDSLSLSMAL-KLDQEVVRG--RPVKISCA 138 (311)
Q Consensus 64 ~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~-afV~f~~~~~a~~al-~l~~~~i~g--~~i~v~~a 138 (311)
-.|||+||++.+|+++|+++|++ |.|.+|.+.... +|| |||+|.+.++|..|+ .|+|..|.+ ..|+|+++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 46889999999999999999999 999999887643 677 999999999999999 899999988 89999999
Q ss_pred CCCCC
Q 021488 139 VPPKK 143 (311)
Q Consensus 139 ~~~~~ 143 (311)
+++..
T Consensus 104 k~~~l 108 (130)
T 3zzy_A 104 KLTSL 108 (130)
T ss_dssp SCSSC
T ss_pred CCCce
Confidence 87654
No 180
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=6.1e-14 Score=116.14 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcCC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVP 140 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~~ 140 (311)
..++|||+|||+++++++|+++|++ |.|..|+|+++. ++.++|||||+|.+.++|.+|+++.+..+.|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 3579999999999999999999999 999999999986 58899999999999999999996555799999999998654
No 181
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.50 E-value=1.1e-13 Score=110.17 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=69.0
Q ss_pred CCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCC--eEeEEEEc
Q 021488 63 YNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRG--RPVKISCA 138 (311)
Q Consensus 63 ~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g--~~i~v~~a 138 (311)
..+|||+||++.+|+++|+++|++ |.|.+|.|... ..+|||||+|.+.++|..|+ .|+|..|.+ +.|+|+|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 357999999999999999999999 99999998643 24789999999999999999 799999965 99999999
Q ss_pred CCCCC
Q 021488 139 VPPKK 143 (311)
Q Consensus 139 ~~~~~ 143 (311)
+++..
T Consensus 122 k~~~l 126 (164)
T 1sjr_A 122 KLTSL 126 (164)
T ss_dssp SSSSC
T ss_pred cCCcc
Confidence 88754
No 182
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.50 E-value=2.7e-14 Score=108.30 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=64.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeE-----eE
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRP-----VK 134 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~-----i~ 134 (311)
...+|||+|||+++++++|+++|.+ |.|..+.|+.+ |||||+|.+.++|.+|| .|++..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4578999999999999999999999 99999999754 89999999999999999 69999999988 78
Q ss_pred EEEcCCCCC
Q 021488 135 ISCAVPPKK 143 (311)
Q Consensus 135 v~~a~~~~~ 143 (311)
|..+.++..
T Consensus 88 v~~~~~~~~ 96 (115)
T 3beg_B 88 VKVDGPRSP 96 (115)
T ss_dssp EEECC----
T ss_pred eccCCCCCC
Confidence 887766544
No 183
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=99.50 E-value=8.4e-15 Score=95.43 Aligned_cols=49 Identities=27% Similarity=0.872 Sum_probs=40.6
Q ss_pred ccCcccCCceeecCCCCcccccccCCccccccccCccccCCCCCCCCCCCCCCCCCcccCCCCCCCCcCCCCCCcccccc
Q 021488 204 VSGKIRRRTCYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRTGNFADNAGLGTTNVSDNAGLSAVSGKIRRRTCYEC 283 (311)
Q Consensus 204 ~~~~~~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~C 283 (311)
+.+..+...||+||+.||++++||.+.. ..||+|
T Consensus 6 f~g~~~~~~C~~Cg~~GH~a~~C~~~~~----------------------------------------------~~C~~C 39 (55)
T 1a1t_A 6 FRNQRKTVKCFNCGKEGHIAKNCRAPRK----------------------------------------------KGCWKC 39 (55)
T ss_dssp GGGGGGTCBCTTTCCBSSCGGGCSSCSC----------------------------------------------CBCTTT
T ss_pred cCCCCCCcceeeeCCCCcChhhcCCCCC----------------------------------------------CEeCCC
Confidence 3444556789999999999999998632 579999
Q ss_pred CCccccCCCCCCccc
Q 021488 284 GEKGHLSSACPKKTA 298 (311)
Q Consensus 284 g~~gH~~~~Cp~~~~ 298 (311)
|++||++++||+...
T Consensus 40 g~~GH~~~~C~~~~~ 54 (55)
T 1a1t_A 40 GKEGHQMKDCTERQA 54 (55)
T ss_dssp CCBSSCGGGCSSSCC
T ss_pred CCcCCccCCCcCcCC
Confidence 999999999998743
No 184
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=5.8e-14 Score=100.37 Aligned_cols=72 Identities=25% Similarity=0.354 Sum_probs=64.2
Q ss_pred CCCE-EEEcCCCCCCCHHH----HHhhccC-C-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEe
Q 021488 62 GYNR-IYIGNLSWDITEED----LKKLFSD-C-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPV 133 (311)
Q Consensus 62 ~~~~-l~V~~L~~~~t~~~----l~~~f~~-g-~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i 133 (311)
+..+ |||.|||+.+++++ |+++|++ | .|.+| ++ |+|||.|.+.++|.+|+ +|++..|.|+.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4456 99999999999988 5589999 6 89988 23 99999999999999999 899999999999
Q ss_pred EEEEcCCCCC
Q 021488 134 KISCAVPPKK 143 (311)
Q Consensus 134 ~v~~a~~~~~ 143 (311)
+|.+|..+..
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999988765
No 185
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.6e-13 Score=110.16 Aligned_cols=79 Identities=29% Similarity=0.456 Sum_probs=73.1
Q ss_pred CEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCC
Q 021488 64 NRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPP 141 (311)
Q Consensus 64 ~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~ 141 (311)
++|||+|||.++++++|+++|++ |.|.++.++.++ ++.++|||||+|.+.++|.+|+ .+++..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 58999999999999999999999 999999999887 5778999999999999999999 89999999999999998776
Q ss_pred CC
Q 021488 142 KK 143 (311)
Q Consensus 142 ~~ 143 (311)
..
T Consensus 80 ~~ 81 (166)
T 3md3_A 80 QQ 81 (166)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 186
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=99.49 E-value=9.3e-15 Score=87.93 Aligned_cols=38 Identities=39% Similarity=1.058 Sum_probs=34.1
Q ss_pred ceeecCCCCcccccccCCccccccccCccccCCCCCCCCCCCCCCCCCcccCCCCCCCCcCCCCCCccccccCCccccCC
Q 021488 212 TCYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRTGNFADNAGLGTTNVSDNAGLSAVSGKIRRRTCYECGEKGHLSS 291 (311)
Q Consensus 212 ~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~gH~~~ 291 (311)
.||+||+.||++++||.++. ..||+||++||+++
T Consensus 2 ~C~~Cg~~GH~a~~C~~~~~----------------------------------------------~~C~~Cg~~GH~~~ 35 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQPRQ----------------------------------------------EGCWNCGSKEHRFA 35 (39)
T ss_dssp BCTTTCCBSSCTTTCCSCCC----------------------------------------------SSCTTTCCSSSCTT
T ss_pred eeeccCCCCcccccCCCCCC----------------------------------------------CccccCCCCCCccC
Confidence 59999999999999998631 57999999999999
Q ss_pred CCCC
Q 021488 292 ACPK 295 (311)
Q Consensus 292 ~Cp~ 295 (311)
+||+
T Consensus 36 ~C~~ 39 (39)
T 2a51_A 36 QCPK 39 (39)
T ss_dssp TSCC
T ss_pred cCcC
Confidence 9996
No 187
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.8e-13 Score=103.49 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=65.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCC---CCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEE
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKET---GEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKI 135 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~---~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v 135 (311)
...++|||+|||+++++++|+++|++ |.|. +.++.+..+ +.++|||||+|.+.++|.+|| .|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 35679999999999999999999999 9999 888888777 789999999999999999999 673 467777766
Q ss_pred EEcC
Q 021488 136 SCAV 139 (311)
Q Consensus 136 ~~a~ 139 (311)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6543
No 188
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=99.48 E-value=1.2e-14 Score=92.10 Aligned_cols=44 Identities=30% Similarity=0.944 Sum_probs=37.9
Q ss_pred ccCCceeecCCCCcccccccCCccccccccCccccCCCCCCCCCCCCCCCCCcccCCCCCCCCcCCCCCCccccccCCcc
Q 021488 208 IRRRTCYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRTGNFADNAGLGTTNVSDNAGLSAVSGKIRRRTCYECGEKG 287 (311)
Q Consensus 208 ~~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~g 287 (311)
.+...||+||+.||++++||.+.. ..||+||+.|
T Consensus 4 ~r~~~C~~Cg~~GH~a~~C~~~~~----------------------------------------------~~C~~Cg~~G 37 (49)
T 2ec7_A 4 RKVIRCWNCGKEGHSARQCRAPRR----------------------------------------------QGCWKCGKTG 37 (49)
T ss_dssp CCCCBCTTTCCBTCCTTTCCCSSC----------------------------------------------CSCSSSCCSS
T ss_pred CCcCeeeecCCCCcChhhCcCCCC----------------------------------------------CeeCcCCCcC
Confidence 345689999999999999998631 5799999999
Q ss_pred ccCCCCCCcc
Q 021488 288 HLSSACPKKT 297 (311)
Q Consensus 288 H~~~~Cp~~~ 297 (311)
|++++||+..
T Consensus 38 H~~~~C~~~~ 47 (49)
T 2ec7_A 38 HVMAKCPERQ 47 (49)
T ss_dssp CCGGGCCSSC
T ss_pred CccCCCcCCC
Confidence 9999999864
No 189
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=99.46 E-value=2.6e-14 Score=94.98 Aligned_cols=56 Identities=32% Similarity=0.684 Sum_probs=38.7
Q ss_pred CCceeecCCCCcccccccCCccccccccCccccCCCCCCCCCCCCCCCCCcccCCCCCCCCcCCCCCCccccccCCcccc
Q 021488 210 RRTCYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRTGNFADNAGLGTTNVSDNAGLSAVSGKIRRRTCYECGEKGHL 289 (311)
Q Consensus 210 ~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~gH~ 289 (311)
...||+|++.||++++||...... .....||+||++||+
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~~~~-----------------------------------------~~~~~C~~Cg~~GH~ 42 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKRKSG-----------------------------------------NSRERCQLCNGMGHN 42 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTTSSS-----------------------------------------CCCSBCTTTCCBSSC
T ss_pred CCcccccCCCCeehhhCcCCcCCC-----------------------------------------CCCCeeCCCCCCCCC
Confidence 457999999999999999975210 012679999999999
Q ss_pred CCCCCCccccccCCccc
Q 021488 290 SSACPKKTADQTNSTTI 306 (311)
Q Consensus 290 ~~~Cp~~~~~~~~~~~~ 306 (311)
+++||+...+.-...+.
T Consensus 43 ar~C~~~~~~~g~~~~~ 59 (61)
T 2ihx_A 43 AKQCRKRDGNQGQRPGK 59 (61)
T ss_dssp GGGCCCCC---------
T ss_pred cCCCcCCCcCCCCCCCC
Confidence 99999986554444443
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.46 E-value=5.4e-13 Score=99.20 Aligned_cols=80 Identities=15% Similarity=0.037 Sum_probs=70.5
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHhhccC-CceeEEEEeecCCC-CCceeEEEEEecCHHHHHHHH-hcCCceeCCeE
Q 021488 61 EGYNRIYIGNLSW-----DITEEDLKKLFSD-CKISSLRFGTNKET-GEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRP 132 (311)
Q Consensus 61 ~~~~~l~V~~L~~-----~~t~~~l~~~f~~-g~i~~i~v~~~~~~-~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~ 132 (311)
.++++|+|.||.. +.++++|++.|++ |.|.++.|+.++.+ +.++||+||+|.++++|.+|+ .|||..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 2378999999999 99999999988654 678999999999999999999 89999999999
Q ss_pred eEEEEcCC
Q 021488 133 VKISCAVP 140 (311)
Q Consensus 133 i~v~~a~~ 140 (311)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999764
No 191
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.45 E-value=2e-13 Score=104.30 Aligned_cols=75 Identities=24% Similarity=0.250 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
.+.++|||+|| ++++++|+++|++ |.|.+|.+. .++|||||+|.+.++|.+|+ .|++..|.|+.|+|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 45689999996 6999999999999 999999986 35899999999999999999 89999999999999999
Q ss_pred CCCCC
Q 021488 139 VPPKK 143 (311)
Q Consensus 139 ~~~~~ 143 (311)
.+++.
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 88754
No 192
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.45 E-value=2.6e-13 Score=113.51 Aligned_cols=76 Identities=16% Similarity=0.317 Sum_probs=69.9
Q ss_pred CCCEEEEcCCC-CCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 62 GYNRIYIGNLS-WDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 62 ~~~~l~V~~L~-~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
+..+|||+||| +.+++++|+++|++ |.|.+|.|+.+. +|||||+|.+.++|.+|| .||+..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45799999999 89999999999999 999999998753 799999999999999999 79999999999999998
Q ss_pred CCCC
Q 021488 139 VPPK 142 (311)
Q Consensus 139 ~~~~ 142 (311)
..+.
T Consensus 78 ~~~~ 81 (205)
T 3tyt_A 78 KQPA 81 (205)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 7543
No 193
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.45 E-value=2.1e-13 Score=97.82 Aligned_cols=70 Identities=23% Similarity=0.529 Sum_probs=63.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-C-----------ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-C-----------KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVR 129 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g-----------~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~ 129 (311)
+.++|||+|||+++++++|+++|++ + .|.++.+..+ +|||||+|.+.++|.+|+.|++..|.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAMAFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHGGGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHHhcCCCEEC
Confidence 4579999999999999999999987 3 6888888754 79999999999999999999999999
Q ss_pred CeEeEEEE
Q 021488 130 GRPVKISC 137 (311)
Q Consensus 130 g~~i~v~~ 137 (311)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 194
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.44 E-value=2.2e-13 Score=114.39 Aligned_cols=81 Identities=20% Similarity=0.448 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~ 139 (311)
..++|||+|||.++++++|+++|+. |.|.++.|+.++.++.++|||||+|.+.++|.+|+ .+++..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4579999999999999999999999 99999999999889999999999999999999999 699999999999998866
Q ss_pred CCC
Q 021488 140 PPK 142 (311)
Q Consensus 140 ~~~ 142 (311)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 195
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=9.6e-13 Score=100.50 Aligned_cols=73 Identities=23% Similarity=0.250 Sum_probs=65.3
Q ss_pred EEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeE-EEEEecCHHHHHHHH-hcCCceeCC--eEeEEEEcC
Q 021488 65 RIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGY-AHVDFSDSLSLSMAL-KLDQEVVRG--RPVKISCAV 139 (311)
Q Consensus 65 ~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~-afV~f~~~~~a~~al-~l~~~~i~g--~~i~v~~a~ 139 (311)
.|||+||++.+++++|+++|++ |.|.+|.|... .|| |||+|.+.++|..|+ .|+|..|.| +.|+|.++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4679999999999999999999 99999998642 386 999999999999999 799999987 689999998
Q ss_pred CCCC
Q 021488 140 PPKK 143 (311)
Q Consensus 140 ~~~~ 143 (311)
++..
T Consensus 101 ~~~l 104 (124)
T 2e5i_A 101 PTRL 104 (124)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7754
No 196
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.44 E-value=2.1e-13 Score=109.80 Aligned_cols=79 Identities=27% Similarity=0.593 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcCC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVP 140 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~~ 140 (311)
++++|||+|||+++|+++|+++|++ |.|.++.++.++.++.++|||||+|.+.++|.+|++. +..+.|+.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 3579999999999999999999999 9999999999998999999999999999999999953 4689999999998765
Q ss_pred C
Q 021488 141 P 141 (311)
Q Consensus 141 ~ 141 (311)
+
T Consensus 81 ~ 81 (167)
T 2cjk_A 81 R 81 (167)
T ss_dssp H
T ss_pred h
Confidence 4
No 197
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=99.44 E-value=3.2e-14 Score=84.50 Aligned_cols=36 Identities=47% Similarity=1.201 Sum_probs=32.9
Q ss_pred ceeecCCCCcccccccCCccccccccCccccCCCCCCCCCCCCCCCCCcccCCCCCCCCcCCCCCCccccccCCccccCC
Q 021488 212 TCYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRTGNFADNAGLGTTNVSDNAGLSAVSGKIRRRTCYECGEKGHLSS 291 (311)
Q Consensus 212 ~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~gH~~~ 291 (311)
.||+|++.||++++||.+ ..||+||++||+++
T Consensus 2 ~C~~Cg~~GH~~~~C~~~------------------------------------------------~~C~~Cg~~GH~a~ 33 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP------------------------------------------------KVCFKCKQPGHFSK 33 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB------------------------------------------------TTCSSCCCTTGGGG
T ss_pred cccccCCCCcchhhCcCc------------------------------------------------CeEccCCCcCCccC
Confidence 599999999999999985 36999999999999
Q ss_pred CCCC
Q 021488 292 ACPK 295 (311)
Q Consensus 292 ~Cp~ 295 (311)
+||+
T Consensus 34 ~C~~ 37 (37)
T 2bl6_A 34 QCRS 37 (37)
T ss_dssp TTCC
T ss_pred cCcC
Confidence 9985
No 198
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.41 E-value=5.5e-13 Score=108.01 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCC--CceeEEEEEecCHHHHHHHH-hcCCceeC---CeEeE
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETG--EFRGYAHVDFSDSLSLSMAL-KLDQEVVR---GRPVK 134 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~--~~~G~afV~f~~~~~a~~al-~l~~~~i~---g~~i~ 134 (311)
..++|||+|||+++++++|+++|++ |.|.++.++.++.++ .++|||||+|.+.++|.+|+ .+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 3579999999999999999999999 999999999998877 89999999999999999999 79988765 57788
Q ss_pred EEEcCCCC
Q 021488 135 ISCAVPPK 142 (311)
Q Consensus 135 v~~a~~~~ 142 (311)
+.++.+..
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88766544
No 199
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=99.40 E-value=7.7e-14 Score=92.55 Aligned_cols=48 Identities=27% Similarity=0.727 Sum_probs=19.1
Q ss_pred ceeecCCCCcccccccCCccccccccCccccCCCCCCCCCCCCCCCCCcccCCCCCCCCcCCCCCCccccccCCccccCC
Q 021488 212 TCYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRTGNFADNAGLGTTNVSDNAGLSAVSGKIRRRTCYECGEKGHLSS 291 (311)
Q Consensus 212 ~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~gH~~~ 291 (311)
.||+|++.||++++||....... .......||+||++||+++
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~~~~~~--------------------------------------~~~~~~~C~~Cg~~GH~ar 44 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEHAHNNA--------------------------------------EPKVPGLCPRCKRGKHWAN 44 (60)
T ss_dssp ----------------------------------------------------------------CCCSCSSCSSCSSCST
T ss_pred ccccCCCCCcCHhhCcCCCCCcc--------------------------------------ccCCCcceeECCCCCCccC
Confidence 69999999999999998753210 0012368999999999999
Q ss_pred CCCCcc
Q 021488 292 ACPKKT 297 (311)
Q Consensus 292 ~Cp~~~ 297 (311)
+||++.
T Consensus 45 ~C~~~~ 50 (60)
T 1cl4_A 45 ECKSKT 50 (60)
T ss_dssp TCCCTT
T ss_pred cCCCcc
Confidence 999874
No 200
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.40 E-value=1.3e-12 Score=114.40 Aligned_cols=81 Identities=27% Similarity=0.380 Sum_probs=73.5
Q ss_pred cCCCCEEEEcCCCCCCCHHHHH----hhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEe
Q 021488 60 VEGYNRIYIGNLSWDITEEDLK----KLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPV 133 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~----~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i 133 (311)
..+.++|||+|||+++++++|+ ++|+. |.|.+|.++. ++.++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999977 89999 9999999875 6778999999999999999999 899999999999
Q ss_pred EEEEcCCCCC
Q 021488 134 KISCAVPPKK 143 (311)
Q Consensus 134 ~v~~a~~~~~ 143 (311)
+|.++..+..
T Consensus 83 ~v~~a~~~~~ 92 (282)
T 3pgw_A 83 RIQYAKTDSD 92 (282)
T ss_pred EEEEeccCcc
Confidence 9999976553
No 201
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.38 E-value=4.8e-13 Score=113.57 Aligned_cols=78 Identities=15% Similarity=0.316 Sum_probs=68.7
Q ss_pred cCCCCEEEEcCCCCCC---------CHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCcee
Q 021488 60 VEGYNRIYIGNLSWDI---------TEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVV 128 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~---------t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i 128 (311)
....++|||+||+..+ ++++|+++|++ |.|.+|.|+.. +|||||+|.+.++|..|+ .|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 79999999999 99999999853 899999999999999999 8999999
Q ss_pred ------------CCeEeEEEEcCCCCC
Q 021488 129 ------------RGRPVKISCAVPPKK 143 (311)
Q Consensus 129 ------------~g~~i~v~~a~~~~~ 143 (311)
.|+.|.|.||...+.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987664
No 202
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=2.7e-13 Score=90.47 Aligned_cols=44 Identities=27% Similarity=0.703 Sum_probs=37.5
Q ss_pred cCCceeecCCCCcccccccCCccccccccCccccCCCCCCCCCCCCCCCCCcccCCCCCCCCcCCCCCCccccccCCccc
Q 021488 209 RRRTCYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRTGNFADNAGLGTTNVSDNAGLSAVSGKIRRRTCYECGEKGH 288 (311)
Q Consensus 209 ~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~gH 288 (311)
+...||+|++.||++++||.... ...||+||++||
T Consensus 6 r~~~C~~Cg~~GH~a~~C~~~~~---------------------------------------------~~~C~~Cg~~GH 40 (63)
T 2cqf_A 6 SGDRCYNCGGLDHHAKECKLPPQ---------------------------------------------PKKCHFCQSISH 40 (63)
T ss_dssp SCCCCSSSCCSSSCTTTCCSCCC---------------------------------------------SSCCTTTCCSSS
T ss_pred CCCcccccCCCCcChhhCCCCCC---------------------------------------------CCccCCcCCcCC
Confidence 34679999999999999997531 267999999999
Q ss_pred cCCCCCCcc
Q 021488 289 LSSACPKKT 297 (311)
Q Consensus 289 ~~~~Cp~~~ 297 (311)
++++||+..
T Consensus 41 ~ar~Cp~~~ 49 (63)
T 2cqf_A 41 MVASCPLKA 49 (63)
T ss_dssp CTTTCTGGG
T ss_pred ccCcCCCcc
Confidence 999999874
No 203
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.37 E-value=1.7e-13 Score=111.35 Aligned_cols=83 Identities=24% Similarity=0.259 Sum_probs=71.1
Q ss_pred cCCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEc
Q 021488 60 VEGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCA 138 (311)
Q Consensus 60 ~~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a 138 (311)
..+.++|||+|||.++++++|+++|.+ |.+.. .++.+..++.++|||||+|.+.++|.+|++|++..|.|+.|+|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEecC
Confidence 345689999999999999999999999 76555 3334445778899999999999999999999999999999999998
Q ss_pred CCCCC
Q 021488 139 VPPKK 143 (311)
Q Consensus 139 ~~~~~ 143 (311)
.++..
T Consensus 89 ~~~~~ 93 (175)
T 1fje_B 89 KGRDS 93 (175)
T ss_dssp CCSSC
T ss_pred CCccc
Confidence 87543
No 204
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=8.5e-12 Score=93.90 Aligned_cols=80 Identities=21% Similarity=0.229 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCCCC-----------HHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCce
Q 021488 61 EGYNRIYIGNLSWDIT-----------EEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEV 127 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t-----------~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~ 127 (311)
.++++|+|.||..... +++|+++|++ |.|..+.| .++ .++|||||+|.+.++|.+|+ .|++..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 4678999999954432 5899999999 99999966 443 36999999999999999999 899999
Q ss_pred eCCeEeEEEEcCCCCCC
Q 021488 128 VRGRPVKISCAVPPKKG 144 (311)
Q Consensus 128 i~g~~i~v~~a~~~~~~ 144 (311)
|.|+.|+|.++.++...
T Consensus 89 ~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 89 FGGRQITAQAWDGTTDY 105 (112)
T ss_dssp ETTEECEEEECCSCCCS
T ss_pred ECCcEEEEEEeCCCCCc
Confidence 99999999999886653
No 205
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.35 E-value=2.5e-12 Score=109.36 Aligned_cols=78 Identities=22% Similarity=0.359 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEE
Q 021488 61 EGYNRIYIGNLSW-DITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISC 137 (311)
Q Consensus 61 ~~~~~l~V~~L~~-~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~ 137 (311)
.+.++|||+|||+ ++++++|+++|++ |.|.+|.|+.++ +|||||+|.+.++|.+|+ .|++..|.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 4568999999999 9999999999999 999999999875 789999999999999999 6999999999999999
Q ss_pred cCCCCC
Q 021488 138 AVPPKK 143 (311)
Q Consensus 138 a~~~~~ 143 (311)
+.+...
T Consensus 107 a~~~~~ 112 (229)
T 2adc_A 107 SKHQNV 112 (229)
T ss_dssp CSCCCC
T ss_pred ecCccc
Confidence 987643
No 206
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.30 E-value=4.2e-12 Score=105.23 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=70.5
Q ss_pred CCEEEEcCCCC-CCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcC
Q 021488 63 YNRIYIGNLSW-DITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 63 ~~~l~V~~L~~-~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~ 139 (311)
.++|||+|||+ ++++++|+++|+. |.|.++.++.++ +|||||+|.+.++|.+|+ .|++..|.|+.|+|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 47999999999 9999999999999 999999998775 789999999999999999 699999999999999998
Q ss_pred CCCC
Q 021488 140 PPKK 143 (311)
Q Consensus 140 ~~~~ 143 (311)
+...
T Consensus 78 ~~~~ 81 (198)
T 1qm9_A 78 HQNV 81 (198)
T ss_dssp CCSC
T ss_pred CCCc
Confidence 7653
No 207
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.29 E-value=9.7e-12 Score=107.82 Aligned_cols=74 Identities=31% Similarity=0.557 Sum_probs=68.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEc
Q 021488 61 EGYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCA 138 (311)
Q Consensus 61 ~~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a 138 (311)
.+.++|||+|||+++|+++|+++|+. |.|..|.+.++ +|||||+|.+.++|.+|+ .+++..|.|+.|+|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 45579999999999999999999999 99999999654 799999999999999999 69999999999999998
Q ss_pred CC
Q 021488 139 VP 140 (311)
Q Consensus 139 ~~ 140 (311)
.+
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 208
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=99.27 E-value=1.1e-12 Score=103.03 Aligned_cols=51 Identities=25% Similarity=0.620 Sum_probs=38.3
Q ss_pred CCceeecCCCCcccccccCCccccccccCccccCCCCCCCCCCCCCCCCCcccCCCCCCCCcCCCCCCccccccCCcccc
Q 021488 210 RRTCYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRTGNFADNAGLGTTNVSDNAGLSAVSGKIRRRTCYECGEKGHL 289 (311)
Q Consensus 210 ~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cy~Cg~~gH~ 289 (311)
...||+||+.||++++||.+.. ...||+||+.||+
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~~~~---------------------------------------------~~~C~~Cg~~GH~ 131 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKLPPQ---------------------------------------------PKKCHFCQSINHM 131 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCSCCC---------------------------------------------CCCCTTTCCSSCC
T ss_pred CCcccEeCCccchhhhCCCCCC---------------------------------------------CCcccccCCcCCE
Confidence 4579999999999999998542 2579999999999
Q ss_pred CCCCCCccccccCCcc
Q 021488 290 SSACPKKTADQTNSTT 305 (311)
Q Consensus 290 ~~~Cp~~~~~~~~~~~ 305 (311)
+++||+.......++|
T Consensus 132 ~r~Cp~~~~~~~~s~g 147 (148)
T 3ts2_A 132 VASCPLKAQQGPSSQG 147 (148)
T ss_dssp GGGCTTTTC-------
T ss_pred eccCcCCCCCCCcccC
Confidence 9999998665544444
No 209
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.27 E-value=9.8e-12 Score=92.36 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=68.0
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHhhccC-CceeEEEEeecCCC--CCceeEEEEEecCHHHHHHHH-hcCCce
Q 021488 62 GYNRIYIGNL--SWDIT--------EEDLKKLFSD-CKISSLRFGTNKET--GEFRGYAHVDFSDSLSLSMAL-KLDQEV 127 (311)
Q Consensus 62 ~~~~l~V~~L--~~~~t--------~~~l~~~f~~-g~i~~i~v~~~~~~--~~~~G~afV~f~~~~~a~~al-~l~~~~ 127 (311)
+++.|.|.|+ |..+. ++||++.|++ |.|.+|.|++++.+ +.++|++||+|.++++|.+|+ .|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678999998 33333 4689999999 99999999988754 367899999999999999999 899999
Q ss_pred eCCeEeEEEEcCC
Q 021488 128 VRGRPVKISCAVP 140 (311)
Q Consensus 128 i~g~~i~v~~a~~ 140 (311)
++|+.|+|.++..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999654
No 210
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.27 E-value=1.2e-11 Score=99.87 Aligned_cols=75 Identities=21% Similarity=0.446 Sum_probs=65.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-C-----------ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-C-----------KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVR 129 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g-----------~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~ 129 (311)
+.++|||+|||+++|+++|+++|++ | .|.++.+.. ++|||||+|.++++|.+|+.+++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 4579999999999999999999998 5 455665543 489999999999999999999999999
Q ss_pred CeEeEEEEcCCCC
Q 021488 130 GRPVKISCAVPPK 142 (311)
Q Consensus 130 g~~i~v~~a~~~~ 142 (311)
|+.|.|.++....
T Consensus 77 g~~i~v~~~~~~~ 89 (172)
T 2g4b_A 77 GQSLKIRRPHDYQ 89 (172)
T ss_dssp TEECEEECCSSCC
T ss_pred CceeeecCCcccC
Confidence 9999999876543
No 211
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.27 E-value=1.3e-11 Score=102.06 Aligned_cols=76 Identities=21% Similarity=0.428 Sum_probs=65.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-C-----------ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-C-----------KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVR 129 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g-----------~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~ 129 (311)
.+++|||+|||+++++++|+++|++ | .|.++.+. .++|||||+|.+.++|.+|+.|++..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 4579999999999999999999998 5 34455443 4589999999999999999999999999
Q ss_pred CeEeEEEEcCCCCC
Q 021488 130 GRPVKISCAVPPKK 143 (311)
Q Consensus 130 g~~i~v~~a~~~~~ 143 (311)
|+.|+|.++.+...
T Consensus 77 g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 77 GQSLKIRRPHDYQP 90 (198)
T ss_dssp TEEEEEECCCCCCC
T ss_pred CceEEEeCCCCCCC
Confidence 99999999876543
No 212
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.25 E-value=2.7e-11 Score=91.77 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCC--C---CCHHHHHhhccC-CceeEEEEeecCC----CCCceeEEEEEecCHHHHHHHH-hcCCceeCC
Q 021488 62 GYNRIYIGNLSW--D---ITEEDLKKLFSD-CKISSLRFGTNKE----TGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRG 130 (311)
Q Consensus 62 ~~~~l~V~~L~~--~---~t~~~l~~~f~~-g~i~~i~v~~~~~----~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g 130 (311)
++++|+|.|+-. + -.++||++.|++ |.|.+|.|+.++. ++.++|++||+|.++++|.+|+ .|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999832 1 246899999999 9999999998864 4567899999999999999999 899999999
Q ss_pred eEeEEEEcCC
Q 021488 131 RPVKISCAVP 140 (311)
Q Consensus 131 ~~i~v~~a~~ 140 (311)
+.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999653
No 213
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.24 E-value=3e-12 Score=94.99 Aligned_cols=70 Identities=13% Similarity=0.285 Sum_probs=61.8
Q ss_pred EcCCCCCCCHHHHHhhc------------cC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEe
Q 021488 68 IGNLSWDITEEDLKKLF------------SD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPV 133 (311)
Q Consensus 68 V~~L~~~~t~~~l~~~f------------~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i 133 (311)
+.|||+.+++++|++.| ++ |.|.++.|+.+. ++.++|||||+|.++++|.+|+ .|||..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777778888777666 89 999999999876 4788999999999999999999 799999999999
Q ss_pred EEEEc
Q 021488 134 KISCA 138 (311)
Q Consensus 134 ~v~~a 138 (311)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99985
No 214
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.23 E-value=5.8e-12 Score=95.28 Aligned_cols=72 Identities=18% Similarity=0.329 Sum_probs=38.6
Q ss_pred CCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHH
Q 021488 6 TGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEED 79 (311)
Q Consensus 6 tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~ 79 (311)
.+.+||||||+|.+.++|++||+ |++..|.|++|.|..+........ ..........+|||+|||+++|++.
T Consensus 41 ~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~--~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 41 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA--ELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp TTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC------------------------------
T ss_pred CCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcccccc--ccccccCCCCceEeCCCCCCccccc
Confidence 35589999999999999999995 999999999999998765443221 1112223456799999999999864
No 215
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.5e-11 Score=86.23 Aligned_cols=60 Identities=7% Similarity=-0.001 Sum_probs=39.3
Q ss_pred CCCcccCCCCchhhhhhcccCCCccccccccccccccCcccCCceeecCCCCcccccccCCccccccccCccccCCCCCC
Q 021488 169 GTSNDADNSGAVTSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGEKGHLSSACLKKTADQTMVTGKVSDNAGSRT 248 (311)
Q Consensus 169 ~~c~~c~~~gh~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~~~~~~~~~~~~ 248 (311)
..|++|++.||++++||. ..+||.|++.||++++|+.+.. ...||.|+..
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~-----------------------~~rcY~c~~~gh~~~~c~~p~~-------~~~CYnCG~~ 55 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPS-----------------------IWRAYILVDDNEKAKPKVLPFH-------TIYCYNCGGK 55 (83)
T ss_dssp -CCSSSCCSSSCGGGCGG-----------------------GTCCCCBC-------------C-------CCBCSSSSCB
T ss_pred CCCCCCCCCCCccccCCC-----------------------cccccccccCCcccccccCCCC-------CCeecccCCC
Confidence 469999999999999964 2369999999999999987532 2349999999
Q ss_pred CCCCCCCCCC
Q 021488 249 GNFADNAGLG 258 (311)
Q Consensus 249 g~~~~~~~~~ 258 (311)
|||+++|+..
T Consensus 56 GH~~rdC~~~ 65 (83)
T 3nyb_B 56 GHFGDDCKEK 65 (83)
T ss_dssp SSCGGGCSSC
T ss_pred CcCcccCCcc
Confidence 9999999976
No 216
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=4.1e-10 Score=82.61 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=56.0
Q ss_pred CCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcCCCCC
Q 021488 73 WDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAVPPKK 143 (311)
Q Consensus 73 ~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~~~~~ 143 (311)
..+++++|+++|++ |.|.+|.|+ +.++|||||+|.+.++|..|+ .++ .+.++.|+|.|+.+++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEEccCCCC
Confidence 46899999999999 999999997 356999999999999999999 544 46799999999887764
No 217
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.09 E-value=2e-10 Score=102.55 Aligned_cols=74 Identities=12% Similarity=0.203 Sum_probs=63.1
Q ss_pred cCCCCEEEEcC--CCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeC---Ce-
Q 021488 60 VEGYNRIYIGN--LSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVR---GR- 131 (311)
Q Consensus 60 ~~~~~~l~V~~--L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~---g~- 131 (311)
+.++.+|||+| |+..+|+++|+++|++ |.|.+|.+.. ++|||||+|.+.++|.+|+ .|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45778999998 5889999999999999 9999987753 4799999999999999999 79999872 44
Q ss_pred -EeEEEEcC
Q 021488 132 -PVKISCAV 139 (311)
Q Consensus 132 -~i~v~~a~ 139 (311)
.|.|.++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57777764
No 218
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=99.04 E-value=9.3e-12 Score=97.75 Aligned_cols=44 Identities=11% Similarity=0.214 Sum_probs=37.1
Q ss_pred CCCCcccCCCCchhhhhhcccCCCccccccccccccccCcccCCceeecCCCCcccccccCCcc
Q 021488 168 LGTSNDADNSGAVTSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGEKGHLSSACLKKTA 231 (311)
Q Consensus 168 ~~~c~~c~~~gh~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~~ 231 (311)
...||+|+..||++++|+..+. ...||+|++.||++++||+...
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~~~~--------------------~~~C~~Cg~~GH~~r~Cp~~~~ 140 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKLPPQ--------------------PKKCHFCQSINHMVASCPLKAQ 140 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCSCCC--------------------CCCCTTTCCSSCCGGGCTTTTC
T ss_pred CCcccEeCCccchhhhCCCCCC--------------------CCcccccCCcCCEeccCcCCCC
Confidence 4579999999999999975322 3479999999999999998754
No 219
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.01 E-value=1.5e-09 Score=81.60 Aligned_cols=75 Identities=11% Similarity=0.083 Sum_probs=62.7
Q ss_pred CCCEEEEcCCCCCC----------CHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeC
Q 021488 62 GYNRIYIGNLSWDI----------TEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVR 129 (311)
Q Consensus 62 ~~~~l~V~~L~~~~----------t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~ 129 (311)
+++.|.|.|+=..- .++||++.|++ |.|.+|.|.++. .+|++||+|.+.++|.+|+ .|||..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 56788888873221 24578999999 999999987653 4899999999999999999 89999999
Q ss_pred CeEeEEEEcCC
Q 021488 130 GRPVKISCAVP 140 (311)
Q Consensus 130 g~~i~v~~a~~ 140 (311)
|+.|+|.++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999753
No 220
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.94 E-value=7e-10 Score=81.39 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=41.6
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKA 46 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~ 46 (311)
+|+.||+++|||||+|.+.++|++||+ ||+..|.|++|+|..+++
T Consensus 53 ~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 53 RDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp ECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred ecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 578899999999999999999999995 999999999999997753
No 221
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=98.93 E-value=5.2e-10 Score=74.02 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=37.6
Q ss_pred CCCcccCCCCchhhhhhcccCCCccccccccccccccCcccCCceeecCCCCcccccccCCccc
Q 021488 169 GTSNDADNSGAVTSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGEKGHLSSACLKKTAD 232 (311)
Q Consensus 169 ~~c~~c~~~gh~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~~~ 232 (311)
..||+|++.+|++++|+.....+ .....||+|++.||++++||.....
T Consensus 5 ~~C~~Cg~~GH~a~~C~~~~~~~----------------~~~~~C~~Cg~~GH~ar~C~~~~~~ 52 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPKKRKSG----------------NSRERCQLCNGMGHNAKQCRKRDGN 52 (61)
T ss_dssp TBCSSSCCBTCCGGGCTTTTSSS----------------CCCSBCTTTCCBSSCGGGCCCCC--
T ss_pred CcccccCCCCeehhhCcCCcCCC----------------CCCCeeCCCCCCCCCcCCCcCCCcC
Confidence 56999999999999998653221 1235799999999999999998653
No 222
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.90 E-value=1.2e-09 Score=79.36 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=40.9
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCC----CcCCeeEEEEECcc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGS----EMDGLFLKIQPYKA 46 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~----~~~g~~i~V~~~~~ 46 (311)
++|+.||++||||||+|.+.++|.+||+ ||+. .|.|++|.|..+++
T Consensus 44 ~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 44 IKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred EecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 4688999999999999999999999996 8886 48899999998754
No 223
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=6.5e-09 Score=73.54 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=59.8
Q ss_pred CCCEEEEcCCC----CCCCH----HHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeE
Q 021488 62 GYNRIYIGNLS----WDITE----EDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRP 132 (311)
Q Consensus 62 ~~~~l~V~~L~----~~~t~----~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~ 132 (311)
+..||+|.-++ .++-. .+|.+.|++ |.|..+++..++ +||+|.+.++|.+|++|++..++|+.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 44678887766 23333 568899999 999999999764 89999999999999999999999999
Q ss_pred eEEEEcCC
Q 021488 133 VKISCAVP 140 (311)
Q Consensus 133 i~v~~a~~ 140 (311)
|+|.++.+
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999765
No 224
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=98.89 E-value=4.6e-10 Score=67.19 Aligned_cols=38 Identities=26% Similarity=0.552 Sum_probs=33.0
Q ss_pred CCcccCCCCchhhhhhcccCCCccccccccccccccCcccCCceeecCCCCcccccccC
Q 021488 170 TSNDADNSGAVTSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGEKGHLSSACLK 228 (311)
Q Consensus 170 ~c~~c~~~gh~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~ 228 (311)
.||+|++.||++++|+.. +...||+||+.||++++||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~---------------------~~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP---------------------RQEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC---------------------CCSSCTTTCCSSSCTTTSCC
T ss_pred eeeccCCCCcccccCCCC---------------------CCCccccCCCCCCccCcCcC
Confidence 599999999999999742 23579999999999999985
No 225
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=98.89 E-value=1.2e-09 Score=74.90 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=24.8
Q ss_pred CCccccccCCccccCCCCCCcc----ccccCCcccccc
Q 021488 276 RRRTCYECGEKGHLSSACPKKT----ADQTNSTTIQVE 309 (311)
Q Consensus 276 ~~~~Cy~Cg~~gH~~~~Cp~~~----~~~~~~~~~~~~ 309 (311)
....||+||+.||++++||... .-.-...||.++
T Consensus 23 r~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~ar 60 (74)
T 2li8_A 23 KGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVA 60 (74)
T ss_dssp TTSCCTTTCCSSSCTTTCSSCCCCCCCTTTCCTTSCGG
T ss_pred CCCcccccCCcCcCcccCCCCCCCCccCCcCCcCCccC
Confidence 4467999999999999999642 233355677665
No 226
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.88 E-value=1.1e-09 Score=80.44 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=51.4
Q ss_pred ccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCC
Q 021488 9 FRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLS 72 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~ 72 (311)
++|||||+|.+.++|++|++ |++..|.|++|.|..+............+.......+|||+||+
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 78999999999999999996 99999999999999887765443333333333446789999997
No 227
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.88 E-value=5.9e-10 Score=80.20 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=39.4
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
+|+.||+++|||||+|.+.++|++||+ ||+..|.|+.|.|..+.+..
T Consensus 37 ~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~ 84 (90)
T 3p5t_L 37 ENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLE 84 (90)
T ss_dssp ECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC----
T ss_pred ecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCc
Confidence 577899999999999999999999995 99999999999998776553
No 228
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=1.2e-09 Score=72.69 Aligned_cols=43 Identities=12% Similarity=0.240 Sum_probs=36.2
Q ss_pred CCCCcccCCCCchhhhhhcccCCCccccccccccccccCcccCCceeecCCCCcccccccCCc
Q 021488 168 LGTSNDADNSGAVTSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGEKGHLSSACLKKT 230 (311)
Q Consensus 168 ~~~c~~c~~~gh~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~ 230 (311)
...||+|++.||++++|+... ....||+|++.||++++||...
T Consensus 7 ~~~C~~Cg~~GH~a~~C~~~~--------------------~~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 7 GDRCYNCGGLDHHAKECKLPP--------------------QPKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp CCCCSSSCCSSSCTTTCCSCC--------------------CSSCCTTTCCSSSCTTTCTGGG
T ss_pred CCcccccCCCCcChhhCCCCC--------------------CCCccCCcCCcCCccCcCCCcc
Confidence 357999999999999997431 2357999999999999999864
No 229
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.87 E-value=2.3e-09 Score=77.24 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=41.6
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-c-CCCCcCCeeEEEEECcccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-L-DGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l-~g~~~~g~~i~V~~~~~~~ 48 (311)
|+|+.||++||||||+|.+.++|.+||+ + ++..|.|++|.|..+.+.+
T Consensus 35 ~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~ 84 (91)
T 2lxi_A 35 MRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKP 84 (91)
T ss_dssp SSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCC
T ss_pred EecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCC
Confidence 4688999999999999999999999996 5 5667999999999776543
No 230
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=98.86 E-value=9.3e-10 Score=65.03 Aligned_cols=36 Identities=28% Similarity=0.706 Sum_probs=32.0
Q ss_pred CCcccCCCCchhhhhhcccCCCccccccccccccccCcccCCceeecCCCCcccccccC
Q 021488 170 TSNDADNSGAVTSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGEKGHLSSACLK 228 (311)
Q Consensus 170 ~c~~c~~~gh~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~ 228 (311)
.||+|++.||++++|+. ...||+|++.||++++||+
T Consensus 2 ~C~~Cg~~GH~~~~C~~-----------------------~~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRA-----------------------PKVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CBSSSCCSSCCTTTSSC-----------------------BTTCSSCCCTTGGGGTTCC
T ss_pred cccccCCCCcchhhCcC-----------------------cCeEccCCCcCCccCcCcC
Confidence 59999999999999963 2479999999999999985
No 231
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.86 E-value=1.8e-09 Score=80.77 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=43.2
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
++|+.||+++|||||+|.+.++|++||+ ||+..|.|+.|.|..+....
T Consensus 39 ~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 39 LLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred EECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 3678899999999999999999999996 99999999999999876543
No 232
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=1.1e-08 Score=77.10 Aligned_cols=73 Identities=16% Similarity=0.077 Sum_probs=63.7
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecC-HHHHHHHH-hc--CCceeCCeEeE
Q 021488 61 EGYNRIYIGNLSWD-ITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSD-SLSLSMAL-KL--DQEVVRGRPVK 134 (311)
Q Consensus 61 ~~~~~l~V~~L~~~-~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~-~~~a~~al-~l--~~~~i~g~~i~ 134 (311)
.+...|||+||++. ++.++|+++|++ |.|..|.+..+.. .|||.|.+ +++|..|+ .+ ++..|.+..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 34568999999999 999999999999 9999999988753 59999999 78899898 67 57789999999
Q ss_pred EEEcC
Q 021488 135 ISCAV 139 (311)
Q Consensus 135 v~~a~ 139 (311)
+++..
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 88754
No 233
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=98.83 E-value=2.2e-09 Score=67.66 Aligned_cols=42 Identities=24% Similarity=0.612 Sum_probs=35.6
Q ss_pred CCCCcccCCCCchhhhhhcccCCCccccccccccccccCcccCCceeecCCCCcccccccCCc
Q 021488 168 LGTSNDADNSGAVTSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGEKGHLSSACLKKT 230 (311)
Q Consensus 168 ~~~c~~c~~~gh~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~ 230 (311)
...||+|++.||++++|+.. +...||.||+.||++++||...
T Consensus 6 ~~~C~~Cg~~GH~a~~C~~~---------------------~~~~C~~Cg~~GH~~~~C~~~~ 47 (49)
T 2ec7_A 6 VIRCWNCGKEGHSARQCRAP---------------------RRQGCWKCGKTGHVMAKCPERQ 47 (49)
T ss_dssp CCBCTTTCCBTCCTTTCCCS---------------------SCCSCSSSCCSSCCGGGCCSSC
T ss_pred cCeeeecCCCCcChhhCcCC---------------------CCCeeCcCCCcCCccCCCcCCC
Confidence 35799999999999999652 2346999999999999999864
No 234
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=7.3e-09 Score=75.71 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=44.2
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~~ 49 (311)
++|+.+|+++|||||+|.+.++|++||+|++..|.|++|.|..+.+...
T Consensus 43 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 43 IYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp CCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCCCC
T ss_pred EeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 4577899999999999999999999999999999999999998876543
No 235
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.82 E-value=4.5e-09 Score=79.35 Aligned_cols=46 Identities=28% Similarity=0.459 Sum_probs=41.6
Q ss_pred CCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccccc
Q 021488 6 TGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKR 51 (311)
Q Consensus 6 tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~~ 51 (311)
+|+++|||||+|.+.++|++||+ |++..|.|+.|.|..+.......
T Consensus 44 ~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 90 (116)
T 2fy1_A 44 TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQS 90 (116)
T ss_dssp TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCSS
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCCC
Confidence 99999999999999999999996 99999999999999887665433
No 236
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.80 E-value=4.7e-09 Score=72.54 Aligned_cols=42 Identities=17% Similarity=0.335 Sum_probs=39.1
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEE
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQP 43 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~ 43 (311)
+++.+|+++|||||+|.+.++|++|+++++..|.|++|.|..
T Consensus 33 ~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 33 FDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp BCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred ecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 566799999999999999999999999999999999999874
No 237
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.79 E-value=2.9e-09 Score=78.19 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=42.6
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCC-eeEEEEECccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDG-LFLKIQPYKAT 47 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g-~~i~V~~~~~~ 47 (311)
++|+.||+++|||||+|.+.++|.+||+ ||+..|.| +.|.|..+.+.
T Consensus 45 ~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 45 PIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp CEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred EEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchh
Confidence 4678899999999999999999999995 99999999 99999977654
No 238
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.78 E-value=6.4e-09 Score=76.65 Aligned_cols=48 Identities=27% Similarity=0.436 Sum_probs=43.6
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+|+.||+++|||||+|.+.++|++||+||+..|.|++|.|..+.....
T Consensus 48 ~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 48 RDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp ECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCCCC
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCCCC
Confidence 567899999999999999999999999999999999999998776543
No 239
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=1e-08 Score=74.41 Aligned_cols=49 Identities=27% Similarity=0.351 Sum_probs=43.8
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
++|+.+|+++|||||+|.+.++|++||+ ||+..|.|++|.|..+.....
T Consensus 39 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 39 MRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 88 (96)
T ss_dssp CCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCC
T ss_pred EEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCC
Confidence 3566899999999999999999999997 999999999999998766543
No 240
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=98.78 E-value=1.4e-09 Score=71.79 Aligned_cols=50 Identities=20% Similarity=0.346 Sum_probs=19.9
Q ss_pred CCCcccCCCCchhhhhhcccCCCccccccccccccccCcccCCceeecCCCCcccccccCCcc
Q 021488 169 GTSNDADNSGAVTSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGEKGHLSSACLKKTA 231 (311)
Q Consensus 169 ~~c~~c~~~gh~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~~ 231 (311)
..||+|++.||++++|+....... .......||+|++.||++++||+...
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~~~~~-------------~~~~~~~C~~Cg~~GH~ar~C~~~~~ 51 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHAHNNA-------------EPKVPGLCPRCKRGKHWANECKSKTD 51 (60)
T ss_dssp ----------------------------------------CCCSCSSCSSCSSCSTTCCCTTS
T ss_pred CccccCCCCCcCHhhCcCCCCCcc-------------ccCCCcceeECCCCCCccCcCCCccc
Confidence 369999999999999986543210 01234689999999999999998763
No 241
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.77 E-value=2.9e-09 Score=78.20 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=43.3
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~ 48 (311)
|+++.+|+++|||||+|.+.++|++||+|++..|.|++|.|..+....
T Consensus 49 ~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 49 VVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp CCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCCC
T ss_pred EecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCCC
Confidence 456778999999999999999999999999999999999999776543
No 242
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=98.77 E-value=3.3e-09 Score=68.68 Aligned_cols=42 Identities=24% Similarity=0.639 Sum_probs=35.8
Q ss_pred CCCCcccCCCCchhhhhhcccCCCccccccccccccccCcccCCceeecCCCCcccccccCCc
Q 021488 168 LGTSNDADNSGAVTSNVAANAGSGTSDVTEHIDLSAVSGKIRRRTCYECGEKGHLSSACLKKT 230 (311)
Q Consensus 168 ~~~c~~c~~~gh~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~~GH~~~~Cp~~~ 230 (311)
...||+|++.||++++|+.. +...||+||+.||++++||...
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~~---------------------~~~~C~~Cg~~GH~~~~C~~~~ 53 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRAP---------------------RKKGCWKCGKEGHQMKDCTERQ 53 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSSC---------------------SCCBCTTTCCBSSCGGGCSSSC
T ss_pred CcceeeeCCCCcChhhcCCC---------------------CCCEeCCCCCcCCccCCCcCcC
Confidence 46799999999999999642 2347999999999999999864
No 243
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.77 E-value=1.5e-08 Score=73.93 Aligned_cols=49 Identities=24% Similarity=0.313 Sum_probs=43.7
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHH-HcCCCCcCCeeEEEEECccccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRAL-ALDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al-~l~g~~~~g~~i~V~~~~~~~~ 49 (311)
++++.+|+++|||||+|.+.++|++|| .||+..|.|++|.|..+.....
T Consensus 41 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 41 PIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp CCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 356679999999999999999999999 5999999999999998876644
No 244
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.77 E-value=7.3e-09 Score=72.99 Aligned_cols=46 Identities=22% Similarity=0.367 Sum_probs=42.0
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
+++.+|+++|||||+|.+.++|++|++ |++..|.|++|.|..+.+.
T Consensus 35 ~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 35 WDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp ECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred EcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 467899999999999999999999996 9999999999999987654
No 245
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.76 E-value=2.6e-09 Score=57.62 Aligned_cols=21 Identities=29% Similarity=0.936 Sum_probs=18.4
Q ss_pred CccccccCCccccCCCCCCcc
Q 021488 277 RRTCYECGEKGHLSSACPKKT 297 (311)
Q Consensus 277 ~~~Cy~Cg~~gH~~~~Cp~~~ 297 (311)
...||+||+.||||++||++.
T Consensus 2 ~~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 2 GPVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CCBCTTTCCBSSCTTTTTCC-
T ss_pred CCeeEeCCCCCcccccCCCcc
Confidence 367999999999999999874
No 246
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=4.1e-09 Score=77.66 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=40.5
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~ 47 (311)
+|+ +|+++|||||+|.+.++|++||++|+..|.|+.|.|.++...
T Consensus 48 ~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 48 IGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp ESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECCC
T ss_pred ECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCCC
Confidence 455 999999999999999999999999999999999999876544
No 247
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.74 E-value=7.5e-09 Score=73.63 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=40.6
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKA 46 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~ 46 (311)
+++.+|+++|||||+|.+.++|++|++ |++..|.|++|.|..+..
T Consensus 40 ~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 40 KDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 466799999999999999999999996 999999999999997654
No 248
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=1.2e-08 Score=76.07 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=40.1
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~ 47 (311)
+|+ +|+++|||||+|.+.++|++||++|+..|.|+.|.|.++...
T Consensus 49 ~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 49 KDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp CCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCHH
T ss_pred ECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCcc
Confidence 454 599999999999999999999999999999999999876543
No 249
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.4e-08 Score=74.52 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=43.7
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
++|+.+|+++|||||+|.+.++|++||+ ||+..|.|++|.|..+.+...
T Consensus 45 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 45 PLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp CCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred EecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCC
Confidence 3567899999999999999999999995 999999999999998776543
No 250
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=8.3e-09 Score=75.82 Aligned_cols=49 Identities=24% Similarity=0.390 Sum_probs=43.7
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
|+++.+|+++|||||+|.+.++|++||+ |++..|.|++|.|..+.+...
T Consensus 45 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 45 VTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp EECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCS
T ss_pred EecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCC
Confidence 3567899999999999999999999996 999999999999998876543
No 251
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.73 E-value=1.5e-08 Score=73.54 Aligned_cols=49 Identities=31% Similarity=0.443 Sum_probs=43.5
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
++++.+|+++|||||+|.+.++|.+|++ |++..|.|+.|.|..+.....
T Consensus 35 ~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 35 MFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp CBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred EeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 3567889999999999999999999995 999999999999998776543
No 252
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=9e-09 Score=73.96 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=40.3
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccc
Q 021488 5 DTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 5 ~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~ 47 (311)
.+|+++|||||+|.+.++|.+||+||+..|.|++|.|..+...
T Consensus 45 ~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 45 AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSC
T ss_pred CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcC
Confidence 7899999999999999999999999999999999999977554
No 253
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.3e-08 Score=75.05 Aligned_cols=49 Identities=12% Similarity=0.276 Sum_probs=43.5
Q ss_pred CccCCC-CCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccccc
Q 021488 1 MTFPDT-GKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 1 i~d~~t-g~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~~ 49 (311)
++++.+ |+++|||||+|.+.++|++||+|++..|.|++|.|..+.....
T Consensus 47 ~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 47 PREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp CBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECCCCCC
T ss_pred ecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEccCCCC
Confidence 356666 9999999999999999999999999999999999998876544
No 254
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.8e-08 Score=75.54 Aligned_cols=49 Identities=24% Similarity=0.373 Sum_probs=43.5
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
++|+.+|+++|||||+|.+.++|++||+ ||+..|.|++|.|..+.....
T Consensus 56 ~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 56 YLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp CBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred EEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 3567899999999999999999999996 999999999999998766543
No 255
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.72 E-value=2.3e-08 Score=75.12 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=43.7
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAK 50 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~ 50 (311)
+++.+|+++|||||+|.+.++|++||+ |++..|.|+.|.|..+......
T Consensus 49 ~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 49 KDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred EcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 466799999999999999999999996 9999999999999988766543
No 256
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.7e-08 Score=73.11 Aligned_cols=48 Identities=27% Similarity=0.449 Sum_probs=43.1
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+++.+|+++|||||+|.+.++|++||+ ||+..|.|++|.|..+.....
T Consensus 39 ~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 39 KDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp CCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred ecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 466789999999999999999999997 999999999999998766543
No 257
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.71 E-value=1e-08 Score=74.90 Aligned_cols=43 Identities=33% Similarity=0.481 Sum_probs=39.8
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEEC
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPY 44 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~ 44 (311)
+|+.+|+++|||||+|.+.++|.+||+ ||+..|.|++|.|..+
T Consensus 55 ~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 55 TDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp ECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred ecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 467899999999999999999999996 9999999999999865
No 258
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=1.7e-08 Score=74.49 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=43.6
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
++++.+|+++|||||+|.+.++|++||+ |++..|.|++|.|..+.....
T Consensus 48 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 48 PKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp CBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSC
T ss_pred EecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCc
Confidence 3566799999999999999999999997 999999999999998766543
No 259
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=1.9e-08 Score=73.85 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=43.3
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHH-HcCCCCcCCeeEEEEECccccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRAL-ALDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al-~l~g~~~~g~~i~V~~~~~~~~ 49 (311)
++++.+++++|||||+|.+.++|.+|| .||+..|.|++|.|..+.....
T Consensus 45 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 45 VKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp CCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred EeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 356789999999999999999999999 5999999999999998765543
No 260
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.71 E-value=1.2e-08 Score=74.41 Aligned_cols=45 Identities=16% Similarity=0.272 Sum_probs=41.1
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHH-HcCCCCcCCeeEEEEECcc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRAL-ALDGSEMDGLFLKIQPYKA 46 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al-~l~g~~~~g~~i~V~~~~~ 46 (311)
+++.+|+++|||||+|.+.++|++|| +||+..|.|++|.|+.+..
T Consensus 49 ~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 49 KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp EECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred EECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 56789999999999999999999999 5999999999999997654
No 261
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.71 E-value=1.2e-08 Score=74.70 Aligned_cols=46 Identities=13% Similarity=0.312 Sum_probs=41.2
Q ss_pred ccC-CCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccc
Q 021488 2 TFP-DTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 2 ~d~-~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~ 47 (311)
+++ .+|+++|||||+|.+.++|.+||+|++..|.|+.|.|..+...
T Consensus 52 ~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 52 REPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp CCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEECCCS
T ss_pred ecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEeccCC
Confidence 445 5899999999999999999999999999999999999977543
No 262
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.70 E-value=1e-08 Score=73.20 Aligned_cols=46 Identities=30% Similarity=0.438 Sum_probs=42.1
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~ 47 (311)
+++.+|+++|||||+|.+.++|++|+.|++..|.|++|.|.++.+.
T Consensus 40 ~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 40 CDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp ESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred ecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 4667999999999999999999999999999999999999987653
No 263
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.70 E-value=1.3e-08 Score=72.05 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=39.9
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEEC
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPY 44 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~ 44 (311)
+|+.+|+++|||||+|.+.++|.+|++ ||+..|.|++|.|..+
T Consensus 41 ~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 41 LDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp EETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 567899999999999999999999995 9999999999999875
No 264
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.9e-08 Score=74.07 Aligned_cols=48 Identities=29% Similarity=0.423 Sum_probs=43.1
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+++.+|+++|||||+|.+.++|.+||+ |++..|.|+.|.|..+.....
T Consensus 49 ~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 49 KDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 97 (103)
T ss_dssp ECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred ecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence 466799999999999999999999997 999999999999998766543
No 265
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.69 E-value=1.1e-08 Score=81.38 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=42.7
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
|+|+.||+++|||||+|.+.++|++||+ ||+..|.|+.|.|..+...
T Consensus 90 ~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 90 AENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp EECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 3578899999999999999999999996 8999999999999987643
No 266
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1e-08 Score=77.14 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=41.6
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~ 48 (311)
+|+ +|+++|||||+|.+.++|++||++++..|.|++|.|.++....
T Consensus 50 ~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 50 VDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp CCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEECHHH
T ss_pred ECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEECCHHH
Confidence 455 9999999999999999999999889999999999999876554
No 267
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=2.1e-08 Score=72.39 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=40.2
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEEC
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPY 44 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~ 44 (311)
++++.+|+++|||||+|.+.++|++||+ ||+..|.|++|.|..+
T Consensus 49 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 49 MKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred EeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 3567789999999999999999999995 9999999999999875
No 268
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=1.6e-08 Score=74.40 Aligned_cols=49 Identities=31% Similarity=0.440 Sum_probs=43.7
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
++++.||+++|||||+|.+.++|++||+ ||+..|.|++|.|..+.....
T Consensus 46 ~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 46 PREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRR 95 (103)
T ss_dssp CBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCS
T ss_pred EeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCC
Confidence 3567889999999999999999999997 999999999999998876543
No 269
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.68 E-value=1.3e-08 Score=73.75 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=40.5
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYK 45 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~ 45 (311)
+++.+|+++|||||+|.+.++|++||+ ||+..|.|++|.|..+.
T Consensus 49 ~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 49 KYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 567899999999999999999999996 99999999999998654
No 270
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=5.8e-09 Score=79.66 Aligned_cols=47 Identities=26% Similarity=0.476 Sum_probs=42.6
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~ 47 (311)
|+++.+|+++|||||+|.+.++|++||+||+..|.|++|.|.++...
T Consensus 58 ~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 58 IAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp EEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEECHH
T ss_pred EEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCHH
Confidence 35678999999999999999999999999999999999999976544
No 271
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.67 E-value=2e-08 Score=75.50 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=42.8
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+|+.+|+++|||||+|.+.++|++||+ ||+..|.|++|.|..+.....
T Consensus 59 ~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 59 IDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 107 (115)
T ss_dssp ECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred ECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence 466799999999999999999999994 999999999999998765543
No 272
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.67 E-value=2.4e-08 Score=74.35 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=42.6
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
+++.+|+++|||||+|.+.++|.+||+ |++..|.|++|.|..+....
T Consensus 60 ~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 107 (110)
T 1oo0_B 60 LDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 107 (110)
T ss_dssp BCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESS
T ss_pred ecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCC
Confidence 567899999999999999999999996 99999999999999876543
No 273
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.66 E-value=3.4e-08 Score=73.56 Aligned_cols=48 Identities=23% Similarity=0.318 Sum_probs=42.4
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~ 48 (311)
++|+.||+++|||||+|.+.++|++||+..+..|.|+.|.|..+....
T Consensus 58 ~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 58 MRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp CCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCCC
T ss_pred EECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCCC
Confidence 357789999999999999999999999866799999999999876554
No 274
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=1.8e-08 Score=74.49 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=42.0
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
+|+.+|+++|||||+|.+.++|++||+ |++..|.|++|.|..+.+.
T Consensus 57 ~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 57 LDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp ECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred ecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCC
Confidence 567889999999999999999999996 9999999999999987654
No 275
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.65 E-value=4.5e-08 Score=72.32 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=43.1
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCc---CCeeEEEEECccccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEM---DGLFLKIQPYKATKA 49 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~---~g~~i~V~~~~~~~~ 49 (311)
++|+.+|+++|||||+|.+.++|.+||+ |++..+ .|++|.|.++.....
T Consensus 46 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 46 LKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp CCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred EecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence 3567799999999999999999999996 999987 889999998876543
No 276
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.65 E-value=1.5e-08 Score=69.83 Aligned_cols=43 Identities=23% Similarity=0.216 Sum_probs=39.3
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEE
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQP 43 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~ 43 (311)
++++.+|+++|||||+|.+.++|++||++++..|.|++|.|..
T Consensus 32 ~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 32 PMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred EecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 3567889999999999999999999999999999999998875
No 277
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.65 E-value=1.9e-08 Score=71.56 Aligned_cols=42 Identities=26% Similarity=0.499 Sum_probs=39.0
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEE
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQP 43 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~ 43 (311)
+++.+|+++|||||+|.+.++|++||++++..|.|++|.|..
T Consensus 45 ~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 45 MDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp ECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred ecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 567899999999999999999999999899999999999975
No 278
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=3.1e-08 Score=73.08 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=39.9
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccc
Q 021488 4 PDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 4 ~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~ 47 (311)
+.+|+++|||||+|.+.++|++||++++..|.|+.|.|.++...
T Consensus 51 ~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 51 DFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp CSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEECTT
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECCHH
Confidence 37999999999999999999999988999999999999876543
No 279
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=1.9e-08 Score=72.70 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=40.5
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYK 45 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~ 45 (311)
+++.+|+++|||||+|.+.++|.+||+ ||+..|.|++|.|..++
T Consensus 49 ~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 49 YDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp ECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred EcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 567889999999999999999999996 99999999999998764
No 280
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.64 E-value=4.6e-08 Score=72.89 Aligned_cols=49 Identities=31% Similarity=0.450 Sum_probs=43.3
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cC------CCCcCCeeEEEEECccccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LD------GSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~------g~~~~g~~i~V~~~~~~~~ 49 (311)
++|+.+|+++|||||+|.+.++|.+||+ |+ +..|.|++|.|..+.+...
T Consensus 48 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 48 VLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp CBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCC
T ss_pred EecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCcc
Confidence 3577899999999999999999999996 88 9999999999998765543
No 281
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=5.4e-08 Score=71.26 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=42.0
Q ss_pred cCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 3 FPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 3 d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
...+|+++|||||+|.+.++|++||+ |++..|.|++|.|..+.....
T Consensus 46 ~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 46 QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp BCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred ECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 34789999999999999999999997 999999999999998766543
No 282
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.63 E-value=1.1e-08 Score=76.93 Aligned_cols=65 Identities=26% Similarity=0.307 Sum_probs=55.7
Q ss_pred CCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHHHHhh
Q 021488 5 DTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKL 83 (311)
Q Consensus 5 ~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l~~~ 83 (311)
.+++++|||||+|.+.++|.+|++ ||+..|.|+.|.|..+.+.... .+++...++++|.++
T Consensus 42 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~------------------~~~~~~~~~~~l~~~ 103 (115)
T 3lqv_A 42 NTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF------------------QKMDTKKKEEQLKLL 103 (115)
T ss_dssp CSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT------------------TTSCHHHHHHHHHHH
T ss_pred eCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh------------------hhhhHhHhHHHHHHH
Confidence 357789999999999999999997 9999999999999987665432 456777889999999
Q ss_pred ccC-C
Q 021488 84 FSD-C 87 (311)
Q Consensus 84 f~~-g 87 (311)
|++ |
T Consensus 104 ~~~~g 108 (115)
T 3lqv_A 104 KEKYG 108 (115)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 988 5
No 283
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=2.8e-08 Score=72.68 Aligned_cols=43 Identities=21% Similarity=0.441 Sum_probs=39.6
Q ss_pred CCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 6 TGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 6 tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
+|+++|||||+|.+.++|++||+ |++..|.|++|.|..+.+..
T Consensus 54 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 54 AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 89999999999999999999995 99999999999999876553
No 284
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=6.1e-08 Score=68.90 Aligned_cols=70 Identities=26% Similarity=0.229 Sum_probs=59.4
Q ss_pred CCCEEEEcCCCCC-----CCH----HHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCe
Q 021488 62 GYNRIYIGNLSWD-----ITE----EDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGR 131 (311)
Q Consensus 62 ~~~~l~V~~L~~~-----~t~----~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~ 131 (311)
+..||+|.-++.+ +-. .+|.+.|++ |.|..+++..++ +||+|.+.++|.+||+|++..++|+
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 4568999888743 222 468899999 999999999773 9999999999999999999999999
Q ss_pred EeEEEEcC
Q 021488 132 PVKISCAV 139 (311)
Q Consensus 132 ~i~v~~a~ 139 (311)
.|+|.+..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99999843
No 285
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.63 E-value=1.9e-08 Score=74.91 Aligned_cols=46 Identities=28% Similarity=0.459 Sum_probs=41.6
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
+++.+|+++|||||+|.+.++|.+||+ |++..|.|++|.|..+...
T Consensus 60 ~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 60 MDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp EETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred EcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 467899999999999999999999996 9999999999999976544
No 286
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=9e-08 Score=71.06 Aligned_cols=48 Identities=19% Similarity=0.174 Sum_probs=42.1
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cC--CCCcCCeeEEEEECccccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LD--GSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~--g~~~~g~~i~V~~~~~~~~ 49 (311)
.|+.+|+++|||||+|.+.++|.+||+ |+ +..|.|++|.|..+.+...
T Consensus 44 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 44 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp SSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred cCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 577899999999999999999999996 85 5899999999998776543
No 287
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.62 E-value=7e-08 Score=71.39 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=41.6
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHH-c-CCCCcCCeeEEEEECccccc
Q 021488 4 PDTGKFRGIAIINFRTEGAVKRALA-L-DGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 4 ~~tg~skG~afV~F~~~~~A~~Al~-l-~g~~~~g~~i~V~~~~~~~~ 49 (311)
+.+|+++|||||+|.+.++|.+||+ | |+..|.|++|.|..+.....
T Consensus 52 ~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 52 TGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVT 99 (107)
T ss_dssp SSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCC
T ss_pred CCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCC
Confidence 5699999999999999999999996 8 99999999999998876543
No 288
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.62 E-value=2.6e-08 Score=76.63 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=41.9
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
+|+.+|+++|||||+|.+.++|++||+ |++..|.|++|.|..+...
T Consensus 80 ~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 80 YDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp CCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 567899999999999999999999996 9999999999999977654
No 289
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.61 E-value=1.6e-08 Score=78.50 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=40.2
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~ 47 (311)
+|+. |+++|||||+|.+.++|++||++|+..|.|++|.|..+...
T Consensus 81 ~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 81 YTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp ECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEECCHH
T ss_pred ECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEECChH
Confidence 3444 99999999999999999999999999999999999876544
No 290
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.61 E-value=1.9e-08 Score=74.62 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=40.6
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~ 48 (311)
+|+. |+++|||||+|.+.++|++||++++..|.|+.|.|.++....
T Consensus 48 ~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 48 LNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYEINNED 93 (107)
T ss_dssp CCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEECCHHH
T ss_pred ECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEECCHHH
Confidence 3444 999999999999999999999999999999999998776543
No 291
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.61 E-value=3.4e-08 Score=75.63 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=40.7
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 4 PDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 4 ~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
..+|+++|||||+|.+.++|..||+ |||..|.|++|.|..+....
T Consensus 66 ~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 66 DLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp CCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred ccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 4589999999999999999999995 99999999999999876554
No 292
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.61 E-value=3.1e-08 Score=72.98 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=41.5
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCC-cCCeeEEEEECccccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSE-MDGLFLKIQPYKATKA 49 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~-~~g~~i~V~~~~~~~~ 49 (311)
+|+ +|+++|||||+|.+.++|.+||+ |++.. |.|++|.|..+.....
T Consensus 44 ~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 92 (104)
T 2dhg_A 44 LDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKAS 92 (104)
T ss_dssp ECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCS
T ss_pred ECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCc
Confidence 355 99999999999999999999996 99999 9999999998765543
No 293
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.61 E-value=4e-08 Score=74.82 Aligned_cols=47 Identities=26% Similarity=0.379 Sum_probs=42.7
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~ 48 (311)
+|+.+|+++|||||+|.+.++|++||+|++..|.|+.|.|..+....
T Consensus 70 ~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 70 CDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNM 116 (124)
T ss_dssp EECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSCCC
T ss_pred ecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCCCC
Confidence 46689999999999999999999999999999999999999876543
No 294
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.60 E-value=2.7e-08 Score=71.25 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=39.6
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
++++.+|+++|||||+|.+.+ |.+|++ ||+..|.|++|.|..+....
T Consensus 34 ~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 34 IYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp CCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred EEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 356788999999999999999 999996 99999999999999876543
No 295
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.60 E-value=1.4e-08 Score=77.64 Aligned_cols=45 Identities=18% Similarity=0.369 Sum_probs=39.4
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~ 47 (311)
+|+. |+++|||||+|.+.++|++||++++..|.|++|.|.++...
T Consensus 77 ~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a~~~ 121 (126)
T 2hgm_A 77 VDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKSSQE 121 (126)
T ss_dssp CCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEECHH
T ss_pred ECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEECCHH
Confidence 4444 99999999999999999999998889999999999876543
No 296
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.60 E-value=2e-08 Score=76.02 Aligned_cols=44 Identities=25% Similarity=0.370 Sum_probs=39.6
Q ss_pred CCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccc
Q 021488 5 DTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 5 ~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~ 48 (311)
.+|+++|||||+|.+.++|++||++|+..|.|+.|.|..+....
T Consensus 56 ~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~~~~ 99 (118)
T 2db1_A 56 REGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFKSHRTE 99 (118)
T ss_dssp SSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEEECHHH
T ss_pred CCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCHHH
Confidence 34999999999999999999999999999999999998775443
No 297
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=1.8e-08 Score=75.69 Aligned_cols=49 Identities=24% Similarity=0.374 Sum_probs=43.9
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~~ 49 (311)
++|+.+|+++|||||+|.+.++|++||.||+..|.|+.|.|..+.....
T Consensus 58 ~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 106 (114)
T 2cq4_A 58 ISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQAEKN 106 (114)
T ss_dssp CCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHHHHHH
T ss_pred EecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecCCCcc
Confidence 3577889999999999999999999999999999999999998765543
No 298
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=2.6e-08 Score=73.38 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=42.9
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+++.+|+++|||||+|.+.++|++||+ |++..|.|+.|.|..+.....
T Consensus 42 ~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 42 YDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKN 90 (104)
T ss_dssp EETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTH
T ss_pred eCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccc
Confidence 466799999999999999999999996 999999999999998776543
No 299
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=4.5e-08 Score=73.68 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=43.0
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+|+.+|+++|||||+|.+.++|++||+.++..|.|+.|.|..+.+...
T Consensus 61 ~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 61 RDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp CCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCC
T ss_pred ECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCcc
Confidence 567889999999999999999999998899999999999998766543
No 300
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.60 E-value=5.7e-08 Score=77.22 Aligned_cols=48 Identities=25% Similarity=0.368 Sum_probs=43.1
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
++|+.+|+++|||||+|.+.++|++||+ ||+..|.|++|.|..+....
T Consensus 103 ~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 103 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp CCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred eecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 3567899999999999999999999996 99999999999999876553
No 301
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.59 E-value=3.6e-08 Score=72.78 Aligned_cols=41 Identities=17% Similarity=0.249 Sum_probs=37.2
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEEC
Q 021488 4 PDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPY 44 (311)
Q Consensus 4 ~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~ 44 (311)
+.+|+++|||||+|.+.++|.+|++ |||..|.|++|.|..+
T Consensus 62 ~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 62 NLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp SSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred CCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 3468999999999999999999995 9999999999999864
No 302
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.58 E-value=3.7e-08 Score=75.89 Aligned_cols=47 Identities=26% Similarity=0.314 Sum_probs=42.1
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCC----CcCCeeEEEEECcccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGS----EMDGLFLKIQPYKATK 48 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~----~~~g~~i~V~~~~~~~ 48 (311)
|+|+.||++||||||+|.+. +|.+||+ ||+. .|.|+.|.|..+....
T Consensus 58 ~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 58 IKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp CBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSC
T ss_pred EEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCC
Confidence 46788999999999999999 9999995 9999 9999999999876653
No 303
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.58 E-value=5.8e-08 Score=74.15 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=43.3
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
++++.+|+++|||||+|.+.++|++||+ ||+..|.|+.|.|..+.....
T Consensus 55 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 55 NLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp CBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 3567799999999999999999999995 999999999999998765543
No 304
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.58 E-value=4.5e-08 Score=69.17 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=34.3
Q ss_pred CccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEEC
Q 021488 8 KFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPY 44 (311)
Q Consensus 8 ~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~ 44 (311)
.+||||||+|.++++|++|++ ||+..|.|++|+|..+
T Consensus 41 ~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 41 LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 489999999999999999996 9999999999999854
No 305
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=3.3e-08 Score=72.11 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=41.4
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCee----EEEEECccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLF----LKIQPYKAT 47 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~----i~V~~~~~~ 47 (311)
+|+.+|+++|||||+|.+.++|++||+ ||+..|.|+. |+|..+...
T Consensus 44 ~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 44 RNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp ECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred ecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 567899999999999999999999997 9999999999 888876554
No 306
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=2.3e-08 Score=73.80 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=42.7
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+++.+|+++|||||+|.+.++|++||+.++..|.|++|.|..+.+...
T Consensus 50 ~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 50 KDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp ECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSSC
T ss_pred eCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCCC
Confidence 467899999999999999999999997799999999999997765543
No 307
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.57 E-value=4.5e-08 Score=76.10 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=43.3
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+++.+|+++|||||+|.+.++|.+||+ ||+..|.|+.|.|..+.....
T Consensus 76 ~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 76 CDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp EETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred EcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 567789999999999999999999996 999999999999998876544
No 308
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.57 E-value=2.5e-08 Score=59.15 Aligned_cols=23 Identities=48% Similarity=0.952 Sum_probs=20.0
Q ss_pred CCccccccCCccccCCCCCCccc
Q 021488 276 RRRTCYECGEKGHLSSACPKKTA 298 (311)
Q Consensus 276 ~~~~Cy~Cg~~gH~~~~Cp~~~~ 298 (311)
....||+||+.||||++||++..
T Consensus 9 ~~~~C~~Cgk~GH~ardCP~~~~ 31 (40)
T 1a6b_B 9 DRDQCAYCKEKGHWAKDCPKKPR 31 (40)
T ss_dssp CSSSCSSSCCTTCCTTSCSSSCC
T ss_pred CCCeeeECCCCCcchhhCcCCcc
Confidence 34689999999999999999854
No 309
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.56 E-value=3.7e-08 Score=74.31 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=40.3
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEEC
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPY 44 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~ 44 (311)
++|+.+|+++|||||+|.+.++|++||+ ||+..|.|++|+|+.+
T Consensus 73 ~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 73 FIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred EeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 3567899999999999999999999996 9999999999999865
No 310
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.56 E-value=3.1e-07 Score=77.26 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=58.0
Q ss_pred CCHHHHHhhccC-CceeEEEEeecC----CCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEEEcC
Q 021488 75 ITEEDLKKLFSD-CKISSLRFGTNK----ETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKISCAV 139 (311)
Q Consensus 75 ~t~~~l~~~f~~-g~i~~i~v~~~~----~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~~a~ 139 (311)
-.+++|.+.|++ |.|.++.|+.+. .++.++|++||+|.+.++|.+|+ .|+|..++|+.|.+.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 456889999999 999999998554 44589999999999999999999 899999999999999964
No 311
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.56 E-value=6.2e-08 Score=71.61 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=39.5
Q ss_pred cCC-CCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 3 FPD-TGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 3 d~~-tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
++. +++++|||||+|.+.++|.+|++ |||..|.||.|.|..+...
T Consensus 48 ~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 48 IPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLD 94 (105)
T ss_dssp CSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHH
T ss_pred CCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHH
Confidence 444 47899999999999999999995 9999999999999987653
No 312
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.56 E-value=3.9e-08 Score=71.58 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=39.7
Q ss_pred CCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 6 TGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 6 tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
|++++|||||+|.+.++|++||+ |++..|.|++|.|..+.....
T Consensus 46 t~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 46 VLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp CEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred CcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence 66999999999999999999997 999999999999998766543
No 313
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.56 E-value=2.9e-08 Score=69.65 Aligned_cols=38 Identities=18% Similarity=0.433 Sum_probs=35.3
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCe-eEEE
Q 021488 4 PDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGL-FLKI 41 (311)
Q Consensus 4 ~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~-~i~V 41 (311)
+.+|+++|||||+|.+.++|.+||+ |||..|.|+ +|+|
T Consensus 41 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 41 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 5789999999999999999999996 999999999 8765
No 314
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=1.2e-07 Score=71.32 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=41.2
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
++++.+++++|||||+|.+.++|++||+ +++ .|.|++|.|..+....
T Consensus 50 ~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 50 ITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGA 97 (116)
T ss_dssp SCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTC
T ss_pred EEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCC
Confidence 3567899999999999999999999997 777 8999999999876543
No 315
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=5.4e-08 Score=71.72 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=39.4
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKA 46 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~ 46 (311)
+|+. |+++|||||+|.+.++|.+||++++..|.|+.|.|.....
T Consensus 45 ~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 45 RTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp CCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred ECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 3444 9999999999999999999999999999999999986554
No 316
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.54 E-value=6.9e-08 Score=74.83 Aligned_cols=47 Identities=26% Similarity=0.393 Sum_probs=42.6
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
+++.+|+++|||||+|.+.++|++||+ |++..|.|++|.|..+....
T Consensus 81 ~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 81 RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp CCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 567799999999999999999999996 99999999999999876654
No 317
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.53 E-value=4.9e-08 Score=69.42 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=39.6
Q ss_pred ccCCCCC-ccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 2 TFPDTGK-FRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 2 ~d~~tg~-skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
+++.++. ++|||||+|.+.++|.+|++ ||+..|.|+.|.|..+.+.
T Consensus 38 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 38 VERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp EETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred eCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 3445555 99999999999999999997 9999999999999977544
No 318
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.53 E-value=9.8e-08 Score=70.11 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=40.5
Q ss_pred CCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 6 TGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 6 tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+|+++|||||+|.+.++|.+||+ ||+..|.|++|.|..+.....
T Consensus 51 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 51 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence 89999999999999999999996 999999999999998876544
No 319
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=2.1e-08 Score=76.33 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=39.4
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccc
Q 021488 4 PDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 4 ~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~ 47 (311)
+.+|+++|||||+|.+.++|++||++|+..|.|+.|.|.++...
T Consensus 62 d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 62 YPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp CTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEEECHH
T ss_pred CCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEECCHH
Confidence 36999999999999999999999988999999999999876543
No 320
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.51 E-value=7.3e-08 Score=71.31 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=38.5
Q ss_pred cCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECc
Q 021488 3 FPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYK 45 (311)
Q Consensus 3 d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~ 45 (311)
++ +|+++|||||+|.+.++|++||+ |++..|.|++|.|..+.
T Consensus 64 ~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 64 DR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 44 99999999999999999999997 99999999999998653
No 321
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.51 E-value=9.9e-08 Score=70.34 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=40.4
Q ss_pred CCCCccceEEEEeCCHHHHHHHHH-cCCCCcCC---eeEEEEECccccc
Q 021488 5 DTGKFRGIAIINFRTEGAVKRALA-LDGSEMDG---LFLKIQPYKATKA 49 (311)
Q Consensus 5 ~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g---~~i~V~~~~~~~~ 49 (311)
.+|+++|||||+|.+.++|++||+ ||+..|.| ++|.|..+.....
T Consensus 51 ~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~ 99 (105)
T 2dnh_A 51 PDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKE 99 (105)
T ss_dssp SSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCC
T ss_pred CCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCcc
Confidence 389999999999999999999996 99999998 9999998876544
No 322
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.51 E-value=5.9e-08 Score=71.71 Aligned_cols=43 Identities=16% Similarity=0.408 Sum_probs=39.3
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCe-eEEEEECcc
Q 021488 4 PDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGL-FLKIQPYKA 46 (311)
Q Consensus 4 ~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~-~i~V~~~~~ 46 (311)
+.+|+++|||||+|.+.++|.+||+ |||..|.|+ +|.|..+..
T Consensus 55 ~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 55 EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 5789999999999999999999996 999999998 999987653
No 323
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.51 E-value=3.1e-08 Score=77.08 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=40.1
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~ 47 (311)
+|+ +|+++|||||+|.+.++|++||++|+..|.|+.|.|..+...
T Consensus 79 ~d~-~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 79 IGP-DGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp CSS-SSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCS
T ss_pred ECC-CCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCC
Confidence 454 599999999999999999999999999999999999876554
No 324
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.50 E-value=6e-08 Score=67.14 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=37.7
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEEC
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPY 44 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~ 44 (311)
+++.+|+++|||||+|.+.++|++|++ ++ ..|.|++|.|+.+
T Consensus 34 ~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 34 RDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred cCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 466789999999999999999999997 66 9999999999864
No 325
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.50 E-value=1.5e-07 Score=71.70 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=40.9
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
+++ +|+++|||||+|.+.++|.+||+ |++..|.|++|.|..+....
T Consensus 69 ~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 69 YDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 115 (124)
T ss_dssp CCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTT
T ss_pred ECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 344 89999999999999999999997 99999999999999876543
No 326
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=1.5e-07 Score=69.18 Aligned_cols=47 Identities=13% Similarity=0.248 Sum_probs=41.0
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+++.+|+++|||||+|.+.++|.+||+ ++..|.|+.|.|..+.....
T Consensus 49 ~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 49 KDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLPNSKQS 95 (103)
T ss_dssp ECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECCCTTCC
T ss_pred ecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEecCCCCc
Confidence 567889999999999999999999998 57789999999998766543
No 327
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=1.9e-07 Score=69.98 Aligned_cols=45 Identities=33% Similarity=0.440 Sum_probs=40.9
Q ss_pred CCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 5 DTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 5 ~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
.+|+++|||||+|.+.++|++||+ |++..|.|++|.|..+.....
T Consensus 62 ~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 62 MTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp ECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence 489999999999999999999996 999999999999998876544
No 328
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=2.2e-07 Score=69.55 Aligned_cols=43 Identities=19% Similarity=0.313 Sum_probs=39.4
Q ss_pred CCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 5 DTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 5 ~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
.+|+++|||||+|.+.++|++||+ |++..|.|+.|.|..+...
T Consensus 51 ~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 51 KDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp TTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred CCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 479999999999999999999997 9999999999999987644
No 329
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.48 E-value=1.2e-07 Score=75.32 Aligned_cols=47 Identities=11% Similarity=0.207 Sum_probs=42.8
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
+++.|++++|||||+|.+.++|++||+ |++..|.|++|.|..+....
T Consensus 73 ~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 73 LDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 567899999999999999999999997 99999999999999876544
No 330
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.48 E-value=5.4e-08 Score=82.39 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=42.7
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
|+|+.||++||||||+|.+.++|++||+ ||+..|.|+.|+|..+...
T Consensus 103 ~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 103 FENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp EECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 3578899999999999999999999996 9999999999999977544
No 331
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.48 E-value=1.3e-07 Score=70.59 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=37.4
Q ss_pred CCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 7 g~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
++++|||||+|.+.++|++||+ ||+..|.|++|.|..+.+..
T Consensus 60 ~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 60 QGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp SCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred CCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 4667999999999999999996 89999999999999776554
No 332
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.47 E-value=1.2e-07 Score=68.71 Aligned_cols=45 Identities=29% Similarity=0.488 Sum_probs=40.4
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 4 PDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 4 ~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
+.+|+++|||||+|.+.++|.+||+ |++..|.|++|.|..+....
T Consensus 47 ~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 47 SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 3578999999999999999999997 99999999999999876543
No 333
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.47 E-value=9.2e-08 Score=69.10 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=37.7
Q ss_pred CCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECc
Q 021488 5 DTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYK 45 (311)
Q Consensus 5 ~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~ 45 (311)
.+|+++|||||+|.+.++|++||+ ||+..|.|++|.|..+.
T Consensus 52 ~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 52 REGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 359999999999999999999997 99999999999998654
No 334
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=2.2e-07 Score=67.40 Aligned_cols=39 Identities=8% Similarity=0.043 Sum_probs=35.7
Q ss_pred cceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 10 RGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 10 kG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
+|||||+|.+.++|++||+ ||+..|.|++|+|..+.+..
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 8999999999999999996 99999999999999876543
No 335
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.46 E-value=1.7e-07 Score=69.91 Aligned_cols=41 Identities=22% Similarity=0.413 Sum_probs=36.8
Q ss_pred CCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 7 g~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
.+++|||||+|.+.++|++||+ ||+..|.|+.|.|..+...
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4689999999999999999995 9999999999999977544
No 336
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.45 E-value=1.3e-07 Score=67.92 Aligned_cols=44 Identities=18% Similarity=0.461 Sum_probs=40.1
Q ss_pred CCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 5 DTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 5 ~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
.+|+++|||||+|.+.++|++||+ |++..|.|+.|.|..+....
T Consensus 43 ~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 43 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 488999999999999999999996 99999999999999876554
No 337
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.84 E-value=2.1e-08 Score=75.53 Aligned_cols=48 Identities=29% Similarity=0.422 Sum_probs=42.7
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+|+.+|+++|||||+|.+.++|.+||+ ||+..|.|++|.|..+.....
T Consensus 49 ~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 49 TDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 456789999999999999999999996 999999999999998766543
No 338
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=2.6e-08 Score=70.50 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=37.7
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEE
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQP 43 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~ 43 (311)
+++.+|+++|||||+|.+.++|.+|++ ||+..|.|+.|+|..
T Consensus 39 ~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 39 LDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred ecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 467899999999999999999999996 999999999887653
No 339
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.43 E-value=2.4e-07 Score=68.43 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=37.0
Q ss_pred CCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 7 g~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
++++|||||+|.+.++|.+|++ |||..|.||.|.|..+...
T Consensus 56 ~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 56 VPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPD 97 (105)
T ss_dssp CTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHH
T ss_pred cCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHH
Confidence 5789999999999999999995 9999999999999876543
No 340
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.41 E-value=1e-07 Score=74.50 Aligned_cols=45 Identities=24% Similarity=0.370 Sum_probs=41.1
Q ss_pred CCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 4 PDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 4 ~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
..+|+++|||||+|.+.++|.+||+ ||+..|.|++|.|..+....
T Consensus 86 ~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 131 (143)
T 3egn_A 86 MKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSAR 131 (143)
T ss_dssp EEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSC
T ss_pred ccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 4689999999999999999999997 99999999999999886543
No 341
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=2.2e-07 Score=68.96 Aligned_cols=45 Identities=18% Similarity=0.291 Sum_probs=39.9
Q ss_pred CCCCCccceEEEEeCCHHHHHHHH-HcCCCCcCCeeEEEEECcccc
Q 021488 4 PDTGKFRGIAIINFRTEGAVKRAL-ALDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 4 ~~tg~skG~afV~F~~~~~A~~Al-~l~g~~~~g~~i~V~~~~~~~ 48 (311)
..+++++|||||+|.+.++|++|| .||+..|.|++|.|..+....
T Consensus 55 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 55 KNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp CCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred EECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCC
Confidence 456779999999999999999999 599999999999999876554
No 342
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=98.41 E-value=8e-08 Score=53.19 Aligned_cols=20 Identities=30% Similarity=0.886 Sum_probs=18.1
Q ss_pred CccccccCCccccCCCCCCc
Q 021488 277 RRTCYECGEKGHLSSACPKK 296 (311)
Q Consensus 277 ~~~Cy~Cg~~gH~~~~Cp~~ 296 (311)
...||+||++||++++||.+
T Consensus 6 ~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSS
T ss_pred CCEEEECCccccCHhHCccc
Confidence 46799999999999999876
No 343
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.40 E-value=2e-07 Score=74.79 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=42.4
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+++.||+++|||||+|.+.++|.+||+ ||+..|.|++|.|..+.....
T Consensus 106 ~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 106 LDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp ECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred ecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 466899999999999999999999996 999999999999998765543
No 344
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=2.1e-07 Score=67.52 Aligned_cols=42 Identities=17% Similarity=0.224 Sum_probs=38.0
Q ss_pred CCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 6 TGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 6 tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
+++++|||||+|.+.++|++||+ ||+..|.|+.|.|..+...
T Consensus 52 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 52 WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 46789999999999999999995 9999999999999987654
No 345
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.7e-07 Score=70.82 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=38.1
Q ss_pred CccCCCCCccceEEEEeCC----HHH----HHHHHH---cCCCCcCCeeEEEEECccc
Q 021488 1 MTFPDTGKFRGIAIINFRT----EGA----VKRALA---LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~----~~~----A~~Al~---l~g~~~~g~~i~V~~~~~~ 47 (311)
++|+.||+|+|||||+|.+ +++ |.+|++ +++..|.|++|+|...+..
T Consensus 39 i~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 39 FNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHS 96 (136)
T ss_dssp EECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTT
T ss_pred EecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECccc
Confidence 4799999999999999996 333 778875 7999999999999865543
No 346
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=7.8e-07 Score=65.20 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=38.3
Q ss_pred CCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 7 g~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+.++|||||+|.+.++|++||+ |++..|.|++|.|..+.....
T Consensus 52 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 52 TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS 95 (103)
T ss_dssp CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence 4479999999999999999997 999999999999998876543
No 347
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.35 E-value=7.2e-07 Score=65.40 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=38.4
Q ss_pred CCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 7 g~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+.++|||||+|.+.++|++||+ |++..|.|++|.|..+.....
T Consensus 52 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 52 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 95 (103)
T ss_dssp TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence 3489999999999999999996 999999999999998876544
No 348
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.34 E-value=3.3e-07 Score=69.12 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=37.7
Q ss_pred CCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcc
Q 021488 6 TGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKA 46 (311)
Q Consensus 6 tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~ 46 (311)
+++++||+||+|.+.++|.+|++ |||..|.||.|.|..+..
T Consensus 67 ~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 67 DAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp TCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred CCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 67899999999999999999995 999999999999987654
No 349
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.33 E-value=1.9e-07 Score=67.71 Aligned_cols=44 Identities=25% Similarity=0.312 Sum_probs=39.5
Q ss_pred CCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 5 DTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 5 ~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
.+|+++|||||+|.+.++|.+|++ |++..|.|++|.|..+....
T Consensus 46 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 46 RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp HHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred cCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 467889999999999999999996 99999999999999876653
No 350
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=98.33 E-value=1.7e-07 Score=59.94 Aligned_cols=22 Identities=50% Similarity=1.004 Sum_probs=19.3
Q ss_pred CCccccccCCccccCCCCCCcc
Q 021488 276 RRRTCYECGEKGHLSSACPKKT 297 (311)
Q Consensus 276 ~~~~Cy~Cg~~gH~~~~Cp~~~ 297 (311)
....||+||+.|||++|||++.
T Consensus 22 ~~~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 22 DRDQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp CTTBCSSSCCBSSCGGGCTTCC
T ss_pred CCCcceeCCCCCcccccCcCCc
Confidence 3467999999999999999974
No 351
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=4.4e-07 Score=67.87 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=36.7
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCc--------CCeeEEEEECc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEM--------DGLFLKIQPYK 45 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~--------~g~~i~V~~~~ 45 (311)
+++ +|+++|||||+|.+.++|.+||+ ||+..| .+++|.|..+.
T Consensus 59 ~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 59 RDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp ECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred ECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 344 89999999999999999999996 999999 46777777654
No 352
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=1.1e-06 Score=65.88 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=28.9
Q ss_pred ccCCC---CCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEE
Q 021488 2 TFPDT---GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQ 42 (311)
Q Consensus 2 ~d~~t---g~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~ 42 (311)
+++.+ |+++|||||+|.+.++|++||+ |+ .+.|+.|.+.
T Consensus 41 ~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 41 HKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp TSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred ecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 44555 8999999999999999999996 52 2444444443
No 353
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.28 E-value=1e-06 Score=65.79 Aligned_cols=41 Identities=24% Similarity=0.409 Sum_probs=37.0
Q ss_pred CccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 8 KFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 8 ~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
.++|||||+|.+.++|.+||+ ||+..|.|++|.|..+....
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 489999999999999999995 99999999999999876543
No 354
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.28 E-value=1.1e-06 Score=63.59 Aligned_cols=42 Identities=19% Similarity=0.375 Sum_probs=37.5
Q ss_pred CCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 7 g~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
++++|||||+|.+.++|.+||+ |++..|.|++|.|..+....
T Consensus 46 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 46 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 3689999999999999999994 99999999999999776553
No 355
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.28 E-value=6.1e-07 Score=66.63 Aligned_cols=41 Identities=20% Similarity=0.386 Sum_probs=37.2
Q ss_pred CCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 7 GKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 7 g~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
++++|||||+|.+.++|++|++ |++..|.|++|.|..+...
T Consensus 66 ~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 66 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 4589999999999999999996 9999999999999987543
No 356
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.27 E-value=6e-07 Score=63.87 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=36.0
Q ss_pred CccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcc
Q 021488 8 KFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKA 46 (311)
Q Consensus 8 ~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~ 46 (311)
+++|||||+|.+.++|++|++ ||+..+.|++|.|..+..
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 689999999999999999996 999999999999997644
No 357
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=6e-07 Score=64.69 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=37.8
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~ 47 (311)
+++.+|+ ||||+|.+.++|++||+|++..|.|+.|.|.++...
T Consensus 40 ~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 40 MDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp ECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCS
T ss_pred EcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcC
Confidence 4666776 999999999999999999999999999999866544
No 358
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.25 E-value=8.8e-07 Score=64.50 Aligned_cols=40 Identities=10% Similarity=0.069 Sum_probs=34.8
Q ss_pred CccceEEEEeCCHHHHHHHHH-cCCCC--cCCeeEEEEECccc
Q 021488 8 KFRGIAIINFRTEGAVKRALA-LDGSE--MDGLFLKIQPYKAT 47 (311)
Q Consensus 8 ~skG~afV~F~~~~~A~~Al~-l~g~~--~~g~~i~V~~~~~~ 47 (311)
++||||||+|++.++|.+|++ |++.. |.|++|+|..++.+
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 468999999999999999996 88775 78999999987654
No 359
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=8.7e-07 Score=63.23 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=35.7
Q ss_pred ceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 11 GIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 11 G~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
|+|||.|.+.++|.+|++ |+|..|.||+|+|..++....
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 999999999999999995 999999999999998776543
No 360
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.24 E-value=5.1e-07 Score=53.51 Aligned_cols=26 Identities=38% Similarity=0.750 Sum_probs=21.8
Q ss_pred ccCCceeecCCCCcccccccCCcccc
Q 021488 208 IRRRTCYECGEKGHLSSACLKKTADQ 233 (311)
Q Consensus 208 ~~~~~C~~Cg~~GH~~~~Cp~~~~~~ 233 (311)
.....||.||+.|||+++||+...+.
T Consensus 8 ~~~~~C~~Cgk~GH~ardCP~~~~~~ 33 (40)
T 1a6b_B 8 LDRDQCAYCKEKGHWAKDCPKKPRGP 33 (40)
T ss_dssp CCSSSCSSSCCTTCCTTSCSSSCCCT
T ss_pred CCCCeeeECCCCCcchhhCcCCcccC
Confidence 34578999999999999999987543
No 361
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=1.2e-06 Score=62.90 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=37.3
Q ss_pred CccceEEEEeCCHHHHHHHHH-cCC-CCcCCeeEEEEECccccc
Q 021488 8 KFRGIAIINFRTEGAVKRALA-LDG-SEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 8 ~skG~afV~F~~~~~A~~Al~-l~g-~~~~g~~i~V~~~~~~~~ 49 (311)
.++|||||+|.+.++|++||+ ||+ ..|.|++|.|..+.....
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 468999999999999999996 999 999999999998766543
No 362
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.22 E-value=2.6e-07 Score=49.66 Aligned_cols=20 Identities=30% Similarity=0.974 Sum_probs=17.7
Q ss_pred CceeecCCCCcccccccCCc
Q 021488 211 RTCYECGEKGHLSSACLKKT 230 (311)
Q Consensus 211 ~~C~~Cg~~GH~~~~Cp~~~ 230 (311)
..||+||+.||++++||...
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 46999999999999999875
No 363
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.22 E-value=2.6e-07 Score=67.68 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=39.1
Q ss_pred ccCCCCCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccc
Q 021488 2 TFPDTGKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 2 ~d~~tg~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~ 47 (311)
+|+ +|+++|||||+|.+.++|++||+ ++..|.|+.|.|..+...
T Consensus 43 ~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 43 TDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp ECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEEC
T ss_pred ECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCcC
Confidence 355 99999999999999999999999 999999999999866543
No 364
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=5e-07 Score=57.57 Aligned_cols=20 Identities=40% Similarity=1.099 Sum_probs=17.6
Q ss_pred CccccccCCccccCCCCCCc
Q 021488 277 RRTCYECGEKGHLSSACPKK 296 (311)
Q Consensus 277 ~~~Cy~Cg~~gH~~~~Cp~~ 296 (311)
...||+||++|||+++||..
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 46799999999999999944
No 365
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.19 E-value=1.2e-06 Score=62.02 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=33.5
Q ss_pred CccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEE
Q 021488 8 KFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQP 43 (311)
Q Consensus 8 ~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~ 43 (311)
+++|||||+|.+.++|.+|+.||+..|.|+.|.|+.
T Consensus 51 ~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 51 QDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SSSSEEEEEESSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred CCCcEEEEEcCCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 458999999999999999999999999999999873
No 366
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.17 E-value=1.5e-06 Score=63.24 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=36.7
Q ss_pred CccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 8 KFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 8 ~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
+++|||||+|.+.++|++||+ |++..|.|++|.|..+....
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 458999999999999999995 99999999999999876653
No 367
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.17 E-value=1.7e-06 Score=80.16 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=42.4
Q ss_pred CccCCCCCccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 1 MTFPDTGKFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 1 i~d~~tg~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
|+|+.||+++|||||+|.+.++|.+||+ ||+..|.|+.|.|..+...
T Consensus 135 ~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 135 VYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred eccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence 3567899999999999999999999995 9999999999999987654
No 368
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.16 E-value=2.5e-06 Score=60.81 Aligned_cols=40 Identities=13% Similarity=0.318 Sum_probs=36.1
Q ss_pred cceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 10 RGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 10 kG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+|||||+|.+.++|++||+ |++..|.|++|.|..+.....
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 6899999999999999995 999999999999998766543
No 369
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.16 E-value=2.5e-06 Score=61.99 Aligned_cols=40 Identities=23% Similarity=0.408 Sum_probs=36.4
Q ss_pred ccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 9 FRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
++|||||+|.+.++|.+||+ ||+..|.|++|.|..+.+..
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 57899999999999999997 99999999999999876554
No 370
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.16 E-value=2e-06 Score=62.37 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=35.4
Q ss_pred ccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 9 FRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
++|||||+|.+.++|.+|++ |++..|.|++|.|..+...
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 47999999999999999996 9999999999999977543
No 371
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.14 E-value=2.2e-06 Score=64.91 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=37.2
Q ss_pred CccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 8 KFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 8 ~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
+++|||||+|.+.++|.+||+ |++..|.|++|.|..+....
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 689999999999999999995 99999999999999876553
No 372
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.2e-06 Score=64.02 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=34.7
Q ss_pred CccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECc
Q 021488 8 KFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYK 45 (311)
Q Consensus 8 ~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~ 45 (311)
+++|||||+|.+.++|.+|++ ||+..|.|+.|.|..++
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 578999999999999999995 99999999999988654
No 373
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.3e-05 Score=58.06 Aligned_cols=70 Identities=16% Similarity=0.118 Sum_probs=60.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC------CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeE
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD------CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVK 134 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~------g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~ 134 (311)
..++|=|-+||+.+++..|+.++.+ |.+..|.+..+ -+-|+|+|.+...|.+|. .|+|..|.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 3578999999999999999877653 67889988877 456999999999999998 9999999999999
Q ss_pred EEE
Q 021488 135 ISC 137 (311)
Q Consensus 135 v~~ 137 (311)
+.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 864
No 374
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=4e-06 Score=62.03 Aligned_cols=40 Identities=20% Similarity=0.407 Sum_probs=36.1
Q ss_pred cceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 10 RGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 10 kG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+|||||+|.+.++|.+||+ |++..|.|+.|.|..+.....
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 7999999999999999995 999999999999998766543
No 375
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.08 E-value=6.4e-06 Score=60.24 Aligned_cols=40 Identities=20% Similarity=0.415 Sum_probs=36.3
Q ss_pred cceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 10 RGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 10 kG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
+|||||+|.+.++|++||+ |++..|.|++|.|..+.....
T Consensus 45 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 45 KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 6799999999999999996 999999999999998876554
No 376
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.08 E-value=3.3e-06 Score=61.06 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=35.2
Q ss_pred cceEEEEeCCHHHHHHHHH-cCCCCcC--CeeEEEEECccc
Q 021488 10 RGIAIINFRTEGAVKRALA-LDGSEMD--GLFLKIQPYKAT 47 (311)
Q Consensus 10 kG~afV~F~~~~~A~~Al~-l~g~~~~--g~~i~V~~~~~~ 47 (311)
+|||||+|.+.++|++||+ ||+..|. |++|.|..+.+.
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 7899999999999999996 9999999 999999987654
No 377
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=2.3e-06 Score=62.88 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=34.3
Q ss_pred ccceEEEEeCCHHHHHHHHH-cC--CCCcCCeeEEEEECcccc
Q 021488 9 FRGIAIINFRTEGAVKRALA-LD--GSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~-l~--g~~~~g~~i~V~~~~~~~ 48 (311)
.||||||+|++.++|++||+ ++ +..|.|++|+|..+....
T Consensus 51 ~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 51 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 37999999999999999997 65 478999999999776554
No 378
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.07 E-value=2.8e-06 Score=62.23 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=33.9
Q ss_pred ccceEEEEeCCHHHHHHHHH-cCC--CCcCCeeEEEEECcccc
Q 021488 9 FRGIAIINFRTEGAVKRALA-LDG--SEMDGLFLKIQPYKATK 48 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~-l~g--~~~~g~~i~V~~~~~~~ 48 (311)
.+|||||+|++.++|..||+ |++ ..|.|++|+|..+....
T Consensus 51 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 51 KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 46999999999999999996 765 45999999999876543
No 379
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.07 E-value=2.9e-06 Score=62.82 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=35.4
Q ss_pred cceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 10 RGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 10 kG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
+|||||+|.+.++|++|++ |++..|.|+.|.|..+....
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 7999999999999999996 99999999999999776543
No 380
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.07 E-value=2.3e-06 Score=63.51 Aligned_cols=40 Identities=23% Similarity=0.383 Sum_probs=36.1
Q ss_pred ccceEEEEeCCHHHHHHHH-HcCCCCcCCeeEEEEECcccc
Q 021488 9 FRGIAIINFRTEGAVKRAL-ALDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al-~l~g~~~~g~~i~V~~~~~~~ 48 (311)
++|||||+|.+.++|++|| +|++..|.|+.|.|..+....
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 5899999999999999999 599999999999999876543
No 381
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.07 E-value=3.9e-06 Score=61.70 Aligned_cols=41 Identities=12% Similarity=0.196 Sum_probs=34.6
Q ss_pred ccceEEEEeCCHHHHHHHHH-cCC--CCcCCeeEEEEECccccc
Q 021488 9 FRGIAIINFRTEGAVKRALA-LDG--SEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~-l~g--~~~~g~~i~V~~~~~~~~ 49 (311)
.||||||+|.+.++|.+||+ |++ ..|.|++|+|..+.....
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 48999999999999999996 654 558999999998876543
No 382
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=3e-06 Score=63.10 Aligned_cols=39 Identities=18% Similarity=0.078 Sum_probs=35.4
Q ss_pred CccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcc
Q 021488 8 KFRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKA 46 (311)
Q Consensus 8 ~skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~ 46 (311)
+++|||||+|.+.++|++||+ ||+..|.|++|.|..+..
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 478999999999999999996 999999999999987654
No 383
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.06 E-value=2.8e-06 Score=63.56 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=35.1
Q ss_pred ccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcc
Q 021488 9 FRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKA 46 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~ 46 (311)
++||+||+|.+.++|.+|++ |||..|.||.|.|..+..
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 58999999999999999995 999999999999987654
No 384
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.06 E-value=3.3e-06 Score=59.35 Aligned_cols=36 Identities=22% Similarity=0.142 Sum_probs=33.4
Q ss_pred ccceEEEEeCCHHHHHHHHH-c-CCCCcCCeeEEEEEC
Q 021488 9 FRGIAIINFRTEGAVKRALA-L-DGSEMDGLFLKIQPY 44 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~-l-~g~~~~g~~i~V~~~ 44 (311)
++|||||+|.+.++|.+|++ | ++..|.|++|.|..+
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 58999999999999999997 7 999999999999865
No 385
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.05 E-value=5.9e-06 Score=58.80 Aligned_cols=39 Identities=23% Similarity=0.430 Sum_probs=35.4
Q ss_pred cceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 10 RGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 10 kG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
++||||+|.+.++|++||+ |++..|.|++|.|..+....
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 5699999999999999996 99999999999999876654
No 386
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.05 E-value=2.4e-06 Score=61.72 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=36.0
Q ss_pred ccceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECcccc
Q 021488 9 FRGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~ 48 (311)
++|||||+|.+.++|.+||+ |++..|.|++|.|..+....
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 47999999999999999996 99999999999999876544
No 387
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=5.8e-06 Score=59.13 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=35.8
Q ss_pred cceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccccc
Q 021488 10 RGIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 10 kG~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~~~ 49 (311)
++||||+|.+.++|.+||+ ||+..|.|+.|.|..+.....
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 5699999999999999995 999999999999998866543
No 388
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=8.1e-06 Score=59.49 Aligned_cols=41 Identities=24% Similarity=0.176 Sum_probs=33.7
Q ss_pred CCccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccc
Q 021488 7 GKFRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 7 g~skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~ 48 (311)
++++|||||+|.+.++|+.||+. ...+.+++|.|..+....
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~-~~~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQN-EVGLVDNPLKISWLEGQP 91 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHT-CCBCSSSBCEEECSSCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHh-cCCCCCCeEEEEEccCCC
Confidence 57899999999999999999973 344679999998765543
No 389
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.02 E-value=5e-06 Score=61.87 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=34.8
Q ss_pred CccceEEEEeCCHHHHHHHHH-c--CCCCcCCeeEEEEECcccc
Q 021488 8 KFRGIAIINFRTEGAVKRALA-L--DGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 8 ~skG~afV~F~~~~~A~~Al~-l--~g~~~~g~~i~V~~~~~~~ 48 (311)
++||||||+|.+.++|.+||+ | ++..|.|++|+|..+....
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYK 103 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccc
Confidence 578999999999999999996 6 4567999999999875543
No 390
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=98.01 E-value=2.9e-06 Score=54.20 Aligned_cols=25 Identities=40% Similarity=0.783 Sum_probs=21.3
Q ss_pred ccCCceeecCCCCcccccccCCccc
Q 021488 208 IRRRTCYECGEKGHLSSACLKKTAD 232 (311)
Q Consensus 208 ~~~~~C~~Cg~~GH~~~~Cp~~~~~ 232 (311)
.....||.||+.|||++|||+...+
T Consensus 21 ~~~~~C~~Cge~GH~ardCp~~~~~ 45 (56)
T 1u6p_A 21 LDRDQCAYCKEKGHWAKDCPKKPRG 45 (56)
T ss_dssp CCTTBCSSSCCBSSCGGGCTTCCCS
T ss_pred CCCCcceeCCCCCcccccCcCCccc
Confidence 3457899999999999999997653
No 391
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.00 E-value=6.3e-06 Score=65.41 Aligned_cols=41 Identities=22% Similarity=0.223 Sum_probs=36.3
Q ss_pred CccceEEEEeCCHHHHHHHHH-cCCCCcCC--eeEEEEECcccc
Q 021488 8 KFRGIAIINFRTEGAVKRALA-LDGSEMDG--LFLKIQPYKATK 48 (311)
Q Consensus 8 ~skG~afV~F~~~~~A~~Al~-l~g~~~~g--~~i~V~~~~~~~ 48 (311)
+++|||||+|.+.++|++|++ |||..|.| ++|+|+.++...
T Consensus 82 ~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 82 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 468999999999999999996 99999965 999999887653
No 392
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=97.99 E-value=2.2e-06 Score=47.29 Aligned_cols=22 Identities=27% Similarity=0.774 Sum_probs=19.2
Q ss_pred CCceeecCCCCcccccccCCcc
Q 021488 210 RRTCYECGEKGHLSSACLKKTA 231 (311)
Q Consensus 210 ~~~C~~Cg~~GH~~~~Cp~~~~ 231 (311)
...||+||+.||++++||.++.
T Consensus 6 ~~~C~nCgk~GH~ar~C~~prk 27 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAPRR 27 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSSSS
T ss_pred CCEEEECCccccCHhHCccccc
Confidence 4579999999999999998753
No 393
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=1e-05 Score=59.11 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=34.9
Q ss_pred cceEEEEeCCHHHHHHHHH-c--CCCCcCCeeEEEEECccccc
Q 021488 10 RGIAIINFRTEGAVKRALA-L--DGSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 10 kG~afV~F~~~~~A~~Al~-l--~g~~~~g~~i~V~~~~~~~~ 49 (311)
||||||+|.+.++|.+||+ | ++..|.|++|+|..+.....
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 8999999999999999996 4 67889999999998875543
No 394
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=7.3e-06 Score=61.67 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=35.2
Q ss_pred ccceEEEEeCCHHHHHHHHH-cC--CCCcCCeeEEEEECccccc
Q 021488 9 FRGIAIINFRTEGAVKRALA-LD--GSEMDGLFLKIQPYKATKA 49 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~-l~--g~~~~g~~i~V~~~~~~~~ 49 (311)
.||||||+|++.++|.+||+ ++ +..|.|++|+|..+.....
T Consensus 66 ~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~ 109 (119)
T 2ad9_A 66 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 109 (119)
T ss_dssp GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCC
Confidence 37999999999999999996 65 5789999999998866543
No 395
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.98 E-value=1e-05 Score=59.74 Aligned_cols=39 Identities=13% Similarity=0.380 Sum_probs=35.4
Q ss_pred ceEEEEeCCHHHHHHHHH-cCCCCcCC-----eeEEEEECccccc
Q 021488 11 GIAIINFRTEGAVKRALA-LDGSEMDG-----LFLKIQPYKATKA 49 (311)
Q Consensus 11 G~afV~F~~~~~A~~Al~-l~g~~~~g-----~~i~V~~~~~~~~ 49 (311)
|||||+|.+.++|++||+ ||+..|.| ++|.|..+.+...
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCC
Confidence 899999999999999996 99999999 9999998776543
No 396
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.97 E-value=6.5e-06 Score=61.35 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=33.0
Q ss_pred ccceEEEEeCCHHHHHHHHH-cCCCCc-----CCeeEEEEECcc
Q 021488 9 FRGIAIINFRTEGAVKRALA-LDGSEM-----DGLFLKIQPYKA 46 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~-l~g~~~-----~g~~i~V~~~~~ 46 (311)
.||||||+|.+.++|++|++ |||..| .|++|+|..+..
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~ 105 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEK 105 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEeccc
Confidence 47999999999999999996 999988 688888886653
No 397
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.88 E-value=1.2e-05 Score=61.33 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=35.6
Q ss_pred ccce-EEEEeCCHHHHHHHHH-cCCCCcCC--eeEEEEECcccc
Q 021488 9 FRGI-AIINFRTEGAVKRALA-LDGSEMDG--LFLKIQPYKATK 48 (311)
Q Consensus 9 skG~-afV~F~~~~~A~~Al~-l~g~~~~g--~~i~V~~~~~~~ 48 (311)
++|| |||+|.+.++|.+|++ |||..|.| +.|+|+.++...
T Consensus 64 ~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 64 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 4688 9999999999999996 99999988 899999887654
No 398
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=1.3e-05 Score=57.65 Aligned_cols=37 Identities=16% Similarity=0.407 Sum_probs=33.4
Q ss_pred ceEEEEeCCHHHHHHHHH-cCCCCcCCeeEEEEECccc
Q 021488 11 GIAIINFRTEGAVKRALA-LDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 11 G~afV~F~~~~~A~~Al~-l~g~~~~g~~i~V~~~~~~ 47 (311)
|.|||+|.+.++|.+||+ ||+..|.|++|.|..+.+.
T Consensus 55 ~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 55 AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 349999999999999996 9999999999999987655
No 399
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=0.00023 Score=51.12 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=61.2
Q ss_pred CCEEEEcCCCCCCCHHHHHhhccC------CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEE
Q 021488 63 YNRIYIGNLSWDITEEDLKKLFSD------CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKIS 136 (311)
Q Consensus 63 ~~~l~V~~L~~~~t~~~l~~~f~~------g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~ 136 (311)
..+|.|.|||+.++++-|.-+|.. |+|..+.... +-|+|+|.+.+.|++.|+...+.|.+..|.|.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 368999999999999999999964 3888888753 46999999999999999777789999999998
Q ss_pred EcCCCCC
Q 021488 137 CAVPPKK 143 (311)
Q Consensus 137 ~a~~~~~ 143 (311)
...++..
T Consensus 80 P~~~~~~ 86 (104)
T 2dhx_A 80 PAPPRAP 86 (104)
T ss_dssp ECCCCCC
T ss_pred cCCCCCc
Confidence 7555443
No 400
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.75 E-value=2.5e-05 Score=58.39 Aligned_cols=37 Identities=14% Similarity=0.310 Sum_probs=31.6
Q ss_pred ceEEEEeCCHHHHHHHHH-cCCCCcCCee-----EEEEECccc
Q 021488 11 GIAIINFRTEGAVKRALA-LDGSEMDGLF-----LKIQPYKAT 47 (311)
Q Consensus 11 G~afV~F~~~~~A~~Al~-l~g~~~~g~~-----i~V~~~~~~ 47 (311)
|||||+|.+.++|++||+ ||+..|.|+. |+|......
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence 899999999999999996 9999999988 777665443
No 401
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.75 E-value=3.2e-05 Score=58.60 Aligned_cols=38 Identities=32% Similarity=0.514 Sum_probs=33.6
Q ss_pred ce-EEEEeCCHHHHHHHHH-cCCCCcCC--eeEEEEECcccc
Q 021488 11 GI-AIINFRTEGAVKRALA-LDGSEMDG--LFLKIQPYKATK 48 (311)
Q Consensus 11 G~-afV~F~~~~~A~~Al~-l~g~~~~g--~~i~V~~~~~~~ 48 (311)
|| |||+|.+.++|..|++ |||..|.| ++|+|..++...
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 86 9999999999999996 99999987 689999776553
No 402
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.61 E-value=1.5e-05 Score=50.75 Aligned_cols=21 Identities=33% Similarity=0.873 Sum_probs=18.2
Q ss_pred CCceeecCCCCcccccccCCc
Q 021488 210 RRTCYECGEKGHLSSACLKKT 230 (311)
Q Consensus 210 ~~~C~~Cg~~GH~~~~Cp~~~ 230 (311)
...||+||++|||+++||...
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~~ 27 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTNG 27 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGGG
T ss_pred CCccccCCCcCcccccCCCCC
Confidence 457999999999999999654
No 403
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.60 E-value=6.3e-05 Score=53.08 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=33.8
Q ss_pred eEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccc
Q 021488 12 IAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 12 ~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~ 48 (311)
.+||+|.+.++|.+||+|||..+.|+.|+|+...+..
T Consensus 51 ~~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 51 KMWVTFLEGSSALNVLSLNGKELLNRTITIALKSPSG 87 (91)
T ss_dssp SEEEEESSHHHHHHGGGGTTCEETTEEEEEEECCCSS
T ss_pred CEEEEECChHHHHHHHhcCCeEeCCeEEEEEeCCCCc
Confidence 3899999999999999999999999999999876554
No 404
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.37 E-value=0.00017 Score=51.09 Aligned_cols=36 Identities=22% Similarity=0.507 Sum_probs=27.7
Q ss_pred ccceEEEEeCCHHHHHHHHHcCCCC--cCCeeEEEEECccc
Q 021488 9 FRGIAIINFRTEGAVKRALALDGSE--MDGLFLKIQPYKAT 47 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~l~g~~--~~g~~i~V~~~~~~ 47 (311)
+||||||+|.+.++|++ +++.. +.|+.|.|..+.+.
T Consensus 47 srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEECC--
T ss_pred CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEcCCC
Confidence 89999999999999984 44544 45899999877654
No 405
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.27 E-value=0.00018 Score=51.04 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=30.5
Q ss_pred EEEEeCCHHHHHHHHHcCCCCcCCeeEEEEEC
Q 021488 13 AIINFRTEGAVKRALALDGSEMDGLFLKIQPY 44 (311)
Q Consensus 13 afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~ 44 (311)
+||+|.+.++|.+||+|||..+.||.|+|+..
T Consensus 61 ~fVtF~d~~sAl~AI~ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 61 MLVTFADSHSALSVLDVDGMKVKGRAVKISGP 92 (95)
T ss_dssp EEEECSCSHHHHHHHHGGGSEETTEEEEEECC
T ss_pred EEEEEcChHHHHHHHhcCCeeeCCeEEEEecc
Confidence 99999999999999999999999999999854
No 406
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.26 E-value=0.0015 Score=47.12 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=59.8
Q ss_pred CCEEEEcCCCCCC-C----HHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEE
Q 021488 63 YNRIYIGNLSWDI-T----EEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKI 135 (311)
Q Consensus 63 ~~~l~V~~L~~~~-t----~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v 135 (311)
.++|+|.||+.++ . .+.++++|.. +++......+.- .-..|.|.++++|.+|- +|++..++|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999998765 2 2567888988 777777666442 24789999999999998 89999999999999
Q ss_pred EEcCCCC
Q 021488 136 SCAVPPK 142 (311)
Q Consensus 136 ~~a~~~~ 142 (311)
-++.+-.
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9988543
No 407
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.24 E-value=0.00015 Score=51.15 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=30.1
Q ss_pred ccceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccc
Q 021488 9 FRGIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATK 48 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~ 48 (311)
++|||||+|.+.++|++|+.. ...+.|++|.|..+.+..
T Consensus 41 ~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 41 FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCCC
T ss_pred CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCCC
Confidence 799999999999999865432 344579999998766543
No 408
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=96.92 E-value=0.0013 Score=58.65 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=30.8
Q ss_pred ccceEEEEeCCHHHHHHHHH-cCCCCcC---Ce--eEEEEECc
Q 021488 9 FRGIAIINFRTEGAVKRALA-LDGSEMD---GL--FLKIQPYK 45 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~-l~g~~~~---g~--~i~V~~~~ 45 (311)
+||||||+|++.++|++||+ |||..+. |+ .|+|....
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 68999999999999999996 9999883 45 57777653
No 409
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.79 E-value=0.0079 Score=42.47 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=57.3
Q ss_pred CEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCC--ceeEEEEEecCHHHHHHHH-hcCCceeCC-----eEeE
Q 021488 64 NRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGE--FRGYAHVDFSDSLSLSMAL-KLDQEVVRG-----RPVK 134 (311)
Q Consensus 64 ~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~--~~G~afV~f~~~~~a~~al-~l~~~~i~g-----~~i~ 134 (311)
.+|-|++||+.+|++++.+.+.. ..+..........+.. ...-|||.|.+.+++.... .++|..+-+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 47899999999999999999999 7777666665544332 3456999999999988888 788887632 2345
Q ss_pred EEEcC
Q 021488 135 ISCAV 139 (311)
Q Consensus 135 v~~a~ 139 (311)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66653
No 410
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.62 E-value=0.01 Score=43.94 Aligned_cols=71 Identities=10% Similarity=0.115 Sum_probs=57.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCC-eEeEEEEcC
Q 021488 62 GYNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRG-RPVKISCAV 139 (311)
Q Consensus 62 ~~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g-~~i~v~~a~ 139 (311)
...-|.|.++|+.. ...|...|++ |.|.+.... ....+-.|.|.++.+|.+||..|+..|++ ..|-|.+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 34679999999975 6778888999 999988862 12468999999999999999999999985 677777743
No 411
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.17 E-value=0.018 Score=40.97 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=53.1
Q ss_pred CCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCC--ceeEEEEEecCHHHHHHHH-hcCCceeCC-----eEe
Q 021488 63 YNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGE--FRGYAHVDFSDSLSLSMAL-KLDQEVVRG-----RPV 133 (311)
Q Consensus 63 ~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~--~~G~afV~f~~~~~a~~al-~l~~~~i~g-----~~i 133 (311)
+-+|-|+.||+.+|++++.+.+.. -.+..........+.+ .-.-|||.|.+.++..... ..+|..+-+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 357999999999999999998887 4443333332222221 2245899999999998888 688887632 245
Q ss_pred EEEEcC
Q 021488 134 KISCAV 139 (311)
Q Consensus 134 ~v~~a~ 139 (311)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566653
No 412
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.04 E-value=0.0042 Score=52.34 Aligned_cols=27 Identities=7% Similarity=0.255 Sum_probs=24.6
Q ss_pred CccceEEEEeCCHHHHHHHHH-cCCCCc
Q 021488 8 KFRGIAIINFRTEGAVKRALA-LDGSEM 34 (311)
Q Consensus 8 ~skG~afV~F~~~~~A~~Al~-l~g~~~ 34 (311)
.+||||||+|.+.++|+.|++ |++..|
T Consensus 177 ~~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 177 ESKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp GGGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 368999999999999999995 999887
No 413
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.80 E-value=0.035 Score=39.34 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=40.5
Q ss_pred CEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHh
Q 021488 64 NRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122 (311)
Q Consensus 64 ~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~ 122 (311)
..++| ++|.++...||.++|+. | -..|..+-|. -|||.|.+++.|..|+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 45666 99999999999999999 6 3445555442 69999999999999884
No 414
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.76 E-value=0.011 Score=42.37 Aligned_cols=52 Identities=21% Similarity=0.331 Sum_probs=43.9
Q ss_pred ceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCC
Q 021488 11 GIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDIT 76 (311)
Q Consensus 11 G~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t 76 (311)
+-|+|.|.+.+.|+..|+...+.|.+..|.|.|+.... ..+|++.+|++.++
T Consensus 48 ~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P~~~~~--------------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQADHELHGAQLSLRPAPPRA--------------PARLLLQGLPPGTS 99 (104)
T ss_dssp TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEECCCCC--------------CCCCCCCSCCCCCC
T ss_pred CcEEEEEcChHHHHHHhcCCcceecCeEEEEEcCCCCC--------------cceEeeecCCCCCC
Confidence 45899999999999999888899999999999865442 35899999998775
No 415
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.91 E-value=0.047 Score=38.81 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=40.6
Q ss_pred EEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHh
Q 021488 65 RIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK 122 (311)
Q Consensus 65 ~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~ 122 (311)
.++| ++|.++...||.++|+. | -..|..+-|. -|||.|.+++.|..|+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHH
Confidence 4556 99999999999999999 6 4556666553 69999999999999984
No 416
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.90 E-value=0.037 Score=41.58 Aligned_cols=75 Identities=11% Similarity=0.101 Sum_probs=53.9
Q ss_pred CEEEEcCCCCCCCHHHHHhhccC-CceeE-EEEeecC--------CCC-----CceeEEEEEecCHHHHHHHHhcCCcee
Q 021488 64 NRIYIGNLSWDITEEDLKKLFSD-CKISS-LRFGTNK--------ETG-----EFRGYAHVDFSDSLSLSMALKLDQEVV 128 (311)
Q Consensus 64 ~~l~V~~L~~~~t~~~l~~~f~~-g~i~~-i~v~~~~--------~~~-----~~~G~afV~f~~~~~a~~al~l~~~~i 128 (311)
.-|.|-|.|++.+ ..|.+.|++ |.|.+ +.+.... ... ....+..|+|.++.+|.+||..||..|
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 4688889987554 556778888 87765 3221100 000 124678999999999999999999999
Q ss_pred CCeEeEEEEcC
Q 021488 129 RGRPVKISCAV 139 (311)
Q Consensus 129 ~g~~i~v~~a~ 139 (311)
+|..|-|.+..
T Consensus 87 ~G~mIGV~Py~ 97 (132)
T 3p3d_A 87 NGVLLGVIPYT 97 (132)
T ss_dssp TTEECEEEECC
T ss_pred CcEEEEEEECC
Confidence 99988888753
No 417
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.024 Score=41.13 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=28.8
Q ss_pred eEEEEeCCHHHHHHHH-HcCCCCcCCeeEEEEE
Q 021488 12 IAIINFRTEGAVKRAL-ALDGSEMDGLFLKIQP 43 (311)
Q Consensus 12 ~afV~F~~~~~A~~Al-~l~g~~~~g~~i~V~~ 43 (311)
=|+|+|.+...|-+|. +|+|..|.|++|++..
T Consensus 64 GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 64 GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp EEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred ceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4999999999998886 8999999999999863
No 418
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.38 E-value=0.026 Score=43.58 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=19.2
Q ss_pred ccceEEEEeCCHHHHHHHHHc
Q 021488 9 FRGIAIINFRTEGAVKRALAL 29 (311)
Q Consensus 9 skG~afV~F~~~~~A~~Al~l 29 (311)
++|||||+|.+.++|.+||+.
T Consensus 109 ~~g~afV~f~~~~~a~~A~~~ 129 (150)
T 2i2y_A 109 PPGFAFVEFEDPRDAADAVRE 129 (150)
T ss_dssp SCSEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEEECCHHHHHHHHHH
Confidence 589999999999999999963
No 419
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.79 E-value=0.11 Score=47.98 Aligned_cols=59 Identities=20% Similarity=0.158 Sum_probs=43.1
Q ss_pred CCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCce
Q 021488 63 YNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEV 127 (311)
Q Consensus 63 ~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~ 127 (311)
.+.|+|. .|..+++.+|.++|++ |.|.++.+..+. .-||.|+|.+.+++..++......
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~~~p 112 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGTHTP 112 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSCCCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhccCCC
Confidence 4689997 7889999999999999 999999887653 369999999999999887443333
No 420
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.65 E-value=0.43 Score=35.39 Aligned_cols=33 Identities=9% Similarity=0.024 Sum_probs=26.7
Q ss_pred eEEEEeCC-HHHHHHHHH-c--CCCCcCCeeEEEEEC
Q 021488 12 IAIINFRT-EGAVKRALA-L--DGSEMDGLFLKIQPY 44 (311)
Q Consensus 12 ~afV~F~~-~~~A~~Al~-l--~g~~~~g~~i~V~~~ 44 (311)
.|||.|.+ +++|..|++ + ++..|.+..+.++..
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 59999999 889999985 6 477788888777643
No 421
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=87.16 E-value=0.65 Score=34.77 Aligned_cols=37 Identities=22% Similarity=0.451 Sum_probs=32.7
Q ss_pred ceEEEEeCCHHHHHHHHHcCCCCcCCeeEEEEECccc
Q 021488 11 GIAIINFRTEGAVKRALALDGSEMDGLFLKIQPYKAT 47 (311)
Q Consensus 11 G~afV~F~~~~~A~~Al~l~g~~~~g~~i~V~~~~~~ 47 (311)
.+-.|.|.+..+|.+||..||..|.|.-|-|.|+...
T Consensus 63 NWikItYds~~~A~rAL~~NG~ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 63 SWTKITYDNPASAVDALLENGAVFNGVLLGVIPYTKD 99 (132)
T ss_dssp TEEEEEBSSHHHHHHHHTTTTCEETTEECEEEECCHH
T ss_pred cEEEEEcCCHHHHHHHHHhCCeEeCcEEEEEEECCHH
Confidence 4679999999999999999999999988888877543
No 422
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.77 E-value=2 Score=30.76 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=30.4
Q ss_pred eEEEEeCCHHHHHHHH-HcCCCCcCCeeEEEEECcc
Q 021488 12 IAIINFRTEGAVKRAL-ALDGSEMDGLFLKIQPYKA 46 (311)
Q Consensus 12 ~afV~F~~~~~A~~Al-~l~g~~~~g~~i~V~~~~~ 46 (311)
-..|.|.++++|.+|- +|++..+.|+.|+|-....
T Consensus 48 Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 48 RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred EEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 4679999999999996 6999999999999987653
No 423
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=75.72 E-value=3.4 Score=30.32 Aligned_cols=35 Identities=17% Similarity=0.388 Sum_probs=29.6
Q ss_pred ceEEEEeCCHHHHHHHHHcCCCCcCC-eeEEEEECc
Q 021488 11 GIAIINFRTEGAVKRALALDGSEMDG-LFLKIQPYK 45 (311)
Q Consensus 11 G~afV~F~~~~~A~~Al~l~g~~~~g-~~i~V~~~~ 45 (311)
.+-.|.|.+..+|++||..||..|.+ .-|-|.+..
T Consensus 60 NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 60 NWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp SEEEEEESSHHHHHHHHTTTTCEETTTEECEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEECC
Confidence 47899999999999999999999985 556677653
No 424
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=74.80 E-value=0.83 Score=23.56 Aligned_cols=18 Identities=28% Similarity=0.656 Sum_probs=15.8
Q ss_pred cccccCCccccCCCCCCc
Q 021488 279 TCYECGEKGHLSSACPKK 296 (311)
Q Consensus 279 ~Cy~Cg~~gH~~~~Cp~~ 296 (311)
-|-+|..=||+..+|+..
T Consensus 5 YCe~CE~FGH~t~~C~d~ 22 (26)
T 2hqh_E 5 YCEICEMFGHWATNCNDD 22 (26)
T ss_dssp EETTTTEESSCGGGCCTT
T ss_pred cchHHHHhCcccccCCcc
Confidence 499999999999999764
No 425
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=73.01 E-value=4.9 Score=26.58 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=39.9
Q ss_pred EEEEc-CCCCCCCHHHHHhhccC-C-----ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCceeCCeEeEEE
Q 021488 65 RIYIG-NLSWDITEEDLKKLFSD-C-----KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQEVVRGRPVKIS 136 (311)
Q Consensus 65 ~l~V~-~L~~~~t~~~l~~~f~~-g-----~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~~i~g~~i~v~ 136 (311)
+|||. +--..+...+|..++.. + .|-.|++. ..|.||+.... .+..++ .|++..+.|+.++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 45553 22345777888888876 3 45667775 33788888544 455666 788888999999988
Q ss_pred EcC
Q 021488 137 CAV 139 (311)
Q Consensus 137 ~a~ 139 (311)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 753
No 426
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=65.36 E-value=17 Score=33.80 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=40.3
Q ss_pred CEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcC
Q 021488 64 NRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLD 124 (311)
Q Consensus 64 ~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~ 124 (311)
..++|+ +|..+...+|.+.|+. | -.+|..+-+ ..+||.|.+++.|..++ .+.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg-~v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGC-CCEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcC-CEEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 456665 9999999999999999 7 345555433 35999999999999888 554
No 427
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=48.78 E-value=9.4 Score=20.92 Aligned_cols=12 Identities=33% Similarity=0.767 Sum_probs=8.8
Q ss_pred ccCCceeecCCC
Q 021488 208 IRRRTCYECGEK 219 (311)
Q Consensus 208 ~~~~~C~~Cg~~ 219 (311)
.+...|++|+.+
T Consensus 18 a~R~~C~~C~~p 29 (33)
T 2k1p_A 18 ARRSECNMCNTP 29 (33)
T ss_dssp TTCSBCSSSCCB
T ss_pred cccccccccCCc
Confidence 345679999876
No 428
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=48.63 E-value=53 Score=22.48 Aligned_cols=51 Identities=16% Similarity=0.063 Sum_probs=40.5
Q ss_pred CCEEEEcCCCCCCCHHHHHhhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH
Q 021488 63 YNRIYIGNLSWDITEEDLKKLFSD-CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL 121 (311)
Q Consensus 63 ~~~l~V~~L~~~~t~~~l~~~f~~-g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al 121 (311)
..-|.|-|+|..+-..++.-+... |---.+..+ .|-|.|.|.+.++...|+
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlai 63 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAI 63 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHH
Confidence 356888999999999998877777 744455554 456999999999988888
No 429
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=40.09 E-value=18 Score=25.56 Aligned_cols=20 Identities=35% Similarity=0.783 Sum_probs=17.5
Q ss_pred ccccccCCcc---ccCCCCCCcc
Q 021488 278 RTCYECGEKG---HLSSACPKKT 297 (311)
Q Consensus 278 ~~Cy~Cg~~g---H~~~~Cp~~~ 297 (311)
-+|-.||..| |--+-||...
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~ 94 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVD 94 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCG
T ss_pred ccCCCCCCcCCcccceecCCCCC
Confidence 5799999999 9999999875
No 430
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=38.59 E-value=8.7 Score=22.19 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=16.7
Q ss_pred CccccccCCccccCCCCCCc
Q 021488 277 RRTCYECGEKGHLSSACPKK 296 (311)
Q Consensus 277 ~~~Cy~Cg~~gH~~~~Cp~~ 296 (311)
+.-|-+|.-=|||..+|+..
T Consensus 20 RpYCd~CEvFGH~t~~Cndd 39 (42)
T 2pzo_E 20 RPYCEICEMFGHWATNCNDD 39 (42)
T ss_dssp -CEETTTTEESSCGGGCCTT
T ss_pred CcccccccccCcccccCCcc
Confidence 34699999999999999764
No 431
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=34.53 E-value=61 Score=22.73 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=48.0
Q ss_pred EEcCCCCCCCHHHHHhhccC--CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHh-cCCceeCCeEeEEEEcCCCCC
Q 021488 67 YIGNLSWDITEEDLKKLFSD--CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALK-LDQEVVRGRPVKISCAVPPKK 143 (311)
Q Consensus 67 ~V~~L~~~~t~~~l~~~f~~--g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~-l~~~~i~g~~i~v~~a~~~~~ 143 (311)
+|-.++..+.-+||+.-+.. |.-.++..... -..|-..+.++.++||+ ++. ...-+.|+|-+..++..
T Consensus 20 RIi~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDr-ss~~kSLrIlL~~~~~~ 90 (103)
T 2cu1_A 20 RILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDR-SIHMKSLKILLVINGST 90 (103)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHH-CSSCCSEEEEEEECCCC
T ss_pred EEEeccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHcc-CCcccceEEEEecCCCC
Confidence 44467888999999988877 77778777622 26788999999999995 443 34445566666555543
No 432
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=34.33 E-value=6.2 Score=21.51 Aligned_cols=13 Identities=31% Similarity=0.958 Sum_probs=9.1
Q ss_pred ccCCceeecCCCC
Q 021488 208 IRRRTCYECGEKG 220 (311)
Q Consensus 208 ~~~~~C~~Cg~~G 220 (311)
.+...||+|+.+-
T Consensus 17 a~r~~C~~C~~pr 29 (32)
T 2lk0_A 17 RKRLKCFRCGADK 29 (32)
T ss_dssp TTCCBCTTTCCBT
T ss_pred hhcceecCCCCcC
Confidence 3456799998763
No 433
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=33.82 E-value=94 Score=20.55 Aligned_cols=57 Identities=9% Similarity=0.052 Sum_probs=36.3
Q ss_pred eEEEEeCCHHHHHHHHH----cCCCCcCCeeEEEEECcccccccCCCCCCCCcCCCCEEEEcCCCCCCCHHHHHhhccC
Q 021488 12 IAIINFRTEGAVKRALA----LDGSEMDGLFLKIQPYKATKAKRTSDFTPKIVEGYNRIYIGNLSWDITEEDLKKLFSD 86 (311)
Q Consensus 12 ~afV~F~~~~~A~~Al~----l~g~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~l~V~~L~~~~t~~~l~~~f~~ 86 (311)
|.++.|....++.+-|+ ++...| |.+.|....+. ..-++|| |.++++++++...+.+
T Consensus 7 Yvl~~~~a~~~~i~Eler~~rine~Vl--R~l~vr~d~~r--------------~YE~m~I--l~P~l~ee~~~~~vek 67 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLARELRIRDNVR--RVMVVASTTPG--------------RYEVNIV--LNPNLDQSQLQNEKEI 67 (77)
T ss_dssp EEEEEEECCHHHHHHHHHHHHTSTTEE--EEEEEECSSTT--------------EEEEEEE--ECTTCCHHHHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHHHHhCCCHHHH--HHHHHhccCCC--------------ceEEEEE--ECCCCCHHHHHHHHHH
Confidence 78999987666655553 677666 55555532222 1236777 5778889888776654
No 434
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=31.73 E-value=27 Score=20.60 Aligned_cols=12 Identities=42% Similarity=1.074 Sum_probs=9.2
Q ss_pred ccCCceeecCCC
Q 021488 208 IRRRTCYECGEK 219 (311)
Q Consensus 208 ~~~~~C~~Cg~~ 219 (311)
..+..||+|+.+
T Consensus 28 a~R~~C~~C~~p 39 (45)
T 1n0z_A 28 ARRTSCDRCGRE 39 (45)
T ss_dssp SSCSBCSSSCCB
T ss_pred cccccccccCCc
Confidence 455679999986
No 435
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.07 E-value=96 Score=21.06 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=37.3
Q ss_pred EEEcCCCCCCCHHHHHhhccC-C--ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH
Q 021488 66 IYIGNLSWDITEEDLKKLFSD-C--KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL 121 (311)
Q Consensus 66 l~V~~L~~~~t~~~l~~~f~~-g--~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al 121 (311)
.|+.-++...+..+|++++.+ . .|..+..+..+ .+ .--|+|++....+|....
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~--~KKA~V~L~~~~~a~dva 80 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RG--EKKAYVKLKPEYSASEVA 80 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TS--CEEEEEEECTTSCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CC--ceEEEEEcCCCCcHHHHH
Confidence 445557788999999999998 4 77777766544 22 224999998776665443
No 436
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=24.23 E-value=21 Score=22.11 Aligned_cols=9 Identities=33% Similarity=1.043 Sum_probs=7.9
Q ss_pred CceeecCCC
Q 021488 211 RTCYECGEK 219 (311)
Q Consensus 211 ~~C~~Cg~~ 219 (311)
.+||.||++
T Consensus 4 VRCFTCGkv 12 (55)
T 1ef4_A 4 VRCLSCGKP 12 (55)
T ss_dssp SSCSCTTSC
T ss_pred eecCCCCCC
Confidence 579999998
No 437
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.38 E-value=1.2e+02 Score=20.68 Aligned_cols=26 Identities=12% Similarity=0.443 Sum_probs=21.6
Q ss_pred ceeEEEEeecCCCCCceeEEEEEecC
Q 021488 88 KISSLRFGTNKETGEFRGYAHVDFSD 113 (311)
Q Consensus 88 ~i~~i~v~~~~~~~~~~G~afV~f~~ 113 (311)
.|++|+|..-...++-++||-|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888777778889999999964
No 438
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=23.05 E-value=1.6e+02 Score=19.94 Aligned_cols=52 Identities=8% Similarity=0.015 Sum_probs=36.8
Q ss_pred EEEcCCCCCCCHHHHHhhccC--C-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHH
Q 021488 66 IYIGNLSWDITEEDLKKLFSD--C-KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMA 120 (311)
Q Consensus 66 l~V~~L~~~~t~~~l~~~f~~--g-~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~a 120 (311)
-|+.-++...+..+|++++.+ + .|..|..+..+ .+ .--|+|++....+|...
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~-~~--~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM-DG--EKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT-TS--SEEEEEEECTTSCHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC-CC--ceEEEEEECCCCcHHHH
Confidence 445567888999999999998 4 77888776654 22 22489999776665443
No 439
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=22.66 E-value=2.1e+02 Score=20.29 Aligned_cols=47 Identities=13% Similarity=0.116 Sum_probs=28.8
Q ss_pred CCCCHHHHHhhccC--C---ceeEE-EEeecCCCCCceeEEEEEecCHHHHHHH
Q 021488 73 WDITEEDLKKLFSD--C---KISSL-RFGTNKETGEFRGYAHVDFSDSLSLSMA 120 (311)
Q Consensus 73 ~~~t~~~l~~~f~~--g---~i~~i-~v~~~~~~~~~~G~afV~f~~~~~a~~a 120 (311)
.+++..||++.+++ + .+.-| .+....-.+++.|||.| |.+.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46889999988887 3 22222 33344445667777755 5666666543
No 440
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=22.51 E-value=31 Score=24.21 Aligned_cols=19 Identities=11% Similarity=0.202 Sum_probs=12.3
Q ss_pred CCCccceEEEEeCCHHHHHH
Q 021488 6 TGKFRGIAIINFRTEGAVKR 25 (311)
Q Consensus 6 tg~skG~afV~F~~~~~A~~ 25 (311)
.|++.|||.| |.+.+.|.+
T Consensus 62 ~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 62 KHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SSEEEEEEEE-ESHHHHHHH
T ss_pred CceEEEEEEE-ECCHHHHHh
Confidence 5778888877 455554443
No 441
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=21.87 E-value=1.8e+02 Score=19.68 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=25.4
Q ss_pred ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH-hcCCc
Q 021488 88 KISSLRFGTNKETGEFRGYAHVDFSDSLSLSMAL-KLDQE 126 (311)
Q Consensus 88 ~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al-~l~~~ 126 (311)
.|..+.++.. ..||.||++...++...++ ...+.
T Consensus 39 ~i~~v~vP~~-----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASES-----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTT-----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecc-----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 5666666542 5899999999988888888 56554
No 442
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=21.33 E-value=21 Score=20.71 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=17.6
Q ss_pred CCceeecCCCCcccccccCC
Q 021488 210 RRTCYECGEKGHLSSACLKK 229 (311)
Q Consensus 210 ~~~C~~Cg~~GH~~~~Cp~~ 229 (311)
+..|-.|--.||+..+|+..
T Consensus 20 RpYCe~CEVFGH~t~eC~dd 39 (42)
T 3e2u_E 20 RPYCEICEMFGHWATNCNDD 39 (42)
T ss_dssp CCEETTTTEESSCGGGCCTT
T ss_pred CcccccceecccccccCCcc
Confidence 55799999999999999864
No 443
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=20.58 E-value=2.2e+02 Score=19.71 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=43.7
Q ss_pred EEcCCCCCCCHHHHHhhccC--CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEE
Q 021488 67 YIGNLSWDITEEDLKKLFSD--CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISC 137 (311)
Q Consensus 67 ~V~~L~~~~t~~~l~~~f~~--g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~ 137 (311)
+|--++.-+.-+||+..... |...++....+. -.|-..+.++.++|+++-.....-+.|+|-+
T Consensus 32 RIi~f~RPv~f~el~~kv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLDrs~~~kSLrIlL 96 (100)
T 2npt_B 32 RILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNNE--------LVIPLTTQDDLDKAVELLDRSIHMKSLKILL 96 (100)
T ss_dssp EEEEECSSCCHHHHHHHHHHHHTSCEEEEEEETT--------EEEECCCHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred EEEecCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEecccHHHHHHHHHHhccCccccceEEEE
Confidence 34456778999999888776 778888776432 5788889999999996422333444455544
No 444
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=20.40 E-value=1.4e+02 Score=20.88 Aligned_cols=26 Identities=15% Similarity=0.429 Sum_probs=21.5
Q ss_pred ceeEEEEeecCCCCCceeEEEEEecC
Q 021488 88 KISSLRFGTNKETGEFRGYAHVDFSD 113 (311)
Q Consensus 88 ~i~~i~v~~~~~~~~~~G~afV~f~~ 113 (311)
.|++|+|..-...++-++||-|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888888777678889999999964
No 445
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=20.01 E-value=1.8e+02 Score=19.81 Aligned_cols=66 Identities=14% Similarity=0.137 Sum_probs=46.3
Q ss_pred EcCCCCCCCHHHHHhhccC--CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHhcCCceeCCeEeEEEEcCCC
Q 021488 68 IGNLSWDITEEDLKKLFSD--CKISSLRFGTNKETGEFRGYAHVDFSDSLSLSMALKLDQEVVRGRPVKISCAVPP 141 (311)
Q Consensus 68 V~~L~~~~t~~~l~~~f~~--g~i~~i~v~~~~~~~~~~G~afV~f~~~~~a~~al~l~~~~i~g~~i~v~~a~~~ 141 (311)
|--++..+.-+||+.-... |...++....+. -.|-..+.++.++|+++-.....-+.|+|-+..+.
T Consensus 17 Ii~f~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~~~ 84 (94)
T 2jrh_A 17 IIAFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILDRSSSMKSLRILLLSQD 84 (94)
T ss_dssp EEEECSSCCHHHHHHHHHHHHCSSEEEEEECSS--------CEEECCSHHHHHHHHHHHHHSTTTTEEEEEEEECS
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEeccCHHHHHHHHHHhccCccccceEEEEEcCC
Confidence 4456777899999887776 777787776332 56888899999999964334445566676665544
Done!