BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021491
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U8S|A Chain A, Crystal Structure Of Putative Glycine Cleavage System
Transcriptional Repressor
pdb|1U8S|B Chain B, Crystal Structure Of Putative Glycine Cleavage System
Transcriptional Repressor
Length = 192
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 123 GTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEA 182
GTDR G+ +EV ++ C+++++++ L+ + SGSP I R+E
Sbjct: 13 GTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLI----SGSP----SNITRVET 64
Query: 183 RL 184
L
Sbjct: 65 TL 66
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH5|A Chain A, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
pdb|1QH5|B Chain B, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
Length = 260
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 1 MKDMEWPACLDEYEKLVIRMNTPRVVIDNAVCPTATLVKVDSARRHGILLEAV 53
MK PA D Y LVI T I + V P VD+AR+HG+ L V
Sbjct: 1 MKVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKV---VDAARKHGVKLTTV 50
>pdb|4I78|A Chain A, Crystal Structure Of A Subtype H17 Hemagglutinin Homologue
From A/little Yellow-shouldered Bat/guatemala/060/2010
(h17n10)
pdb|4I78|B Chain B, Crystal Structure Of A Subtype H17 Hemagglutinin Homologue
From A/little Yellow-shouldered Bat/guatemala/060/2010
(h17n10)
Length = 328
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 8/68 (11%)
Query: 87 NKLTDESV-ISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQC-SV 144
N L +++V ++ ++ LET H G+ S NG+ L+L G L L + C ++
Sbjct: 21 NTLLEQNVPVTGAQEILETNHNGKLCSLNGVPPLDLQSCTLAGWL------LGNPNCDNL 74
Query: 145 VEAKVWTH 152
+EA+ W++
Sbjct: 75 LEAEEWSY 82
>pdb|2PCE|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|C Chain C, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|D Chain D, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|E Chain E, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|F Chain F, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|G Chain G, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|H Chain H, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|3FV9|G Chain G, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|A Chain A, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|D Chain D, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|E Chain E, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|F Chain F, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|B Chain B, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|H Chain H, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|C Chain C, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
Length = 386
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 173 DSQQIDRIEARLRNVLKGDNDIRSA 197
D +Q DRI R+R+ LKG D R+A
Sbjct: 82 DPRQHDRIWDRMRDTLKGHRDARAA 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,440,398
Number of Sequences: 62578
Number of extensions: 316801
Number of successful extensions: 792
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 4
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)