BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021491
(311 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 52/87 (59%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
TP V I NA+ T+++V+ R G+L E VL+DL+L I A+I++ G +D F+V
Sbjct: 830 TPEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYV 889
Query: 82 TDLNGNKLTDESVISYIEQSLETIHYG 108
TDL G+K+T E+ I L+ + G
Sbjct: 890 TDLVGSKITSENRQMNIAARLKAVLAG 916
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 104 TIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK 163
TI SN F T +E+ G DR GLLSEV AVL+DL + A + T ++ YV
Sbjct: 834 TISNALSNKF---TVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 164 DCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVS-MAVTHTERRLH 213
D +++Q++ I ARL+ VL G+ D +M +A T R H
Sbjct: 891 DLVGSKITSENRQMN-IAARLKAVLAGEVDEARERMPSGIIAPTPVPRASH 940
Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 229 RHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
R T P VT+ N ++V+ V+ DRT LL +V L+D+ + A I T GE+
Sbjct: 825 RAFTVTPEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEK 882
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 59.7 bits (143), Expect = 3e-08, Method: Composition-based stats.
Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 21/163 (12%)
Query: 125 DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARL 184
D GL S++ +A ++++AK+ T + A I+ G IE ++I R+ +
Sbjct: 735 DHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIFTVQTLEGHAIEKEERIARLAKTV 794
Query: 185 RNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPV-LRHSTDYPVVTVQNWA 243
R+VL GD + A R R+P RH T P V V N A
Sbjct: 795 RDVLTGDLPLEKA--------------------LRRQPPRLPERTRHLTVPPRVIVDNQA 834
Query: 244 DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
++++V+ + +DR L+ V LTD+ + A ++T GER
Sbjct: 835 SKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGER 877
Score = 54.7 bits (130), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 47/81 (58%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV++DN T T+++++ R G L + LTD+ + I A +S+ G +D F+V
Sbjct: 826 PRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYVK 885
Query: 83 DLNGNKLTDESVISYIEQSLE 103
D+ G K+ + ++ I ++LE
Sbjct: 886 DVFGMKIVHRAKLAQIREALE 906
Score = 38.1 bits (87), Expect = 0.074, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 31/139 (22%)
Query: 56 LTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR------ 109
L +N+L K SDG +D+F V L G+ + E I+ + +++ + G
Sbjct: 749 LAGVNILDAKITTMSDGGA-LDIFTVQTLEGHAIEKEERIARLAKTVRDVLTGDLPLEKA 807
Query: 110 ------------------------SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVV 145
+ + T +E+ G DR G L V L D+ +
Sbjct: 808 LRRQPPRLPERTRHLTVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQIS 867
Query: 146 EAKVWTHNGRIASLIYVKD 164
A+V T+ R+ YVKD
Sbjct: 868 SARVSTYGERVVDSFYVKD 886
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV+IDN T T+++V+ R G+L + + LT+L L I A IS+ G +DVF+V
Sbjct: 845 PRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVK 904
Query: 83 DLNGNKLTDESVISYIEQSL 102
D+ G K+T E+ ++ I + L
Sbjct: 905 DVFGLKVTHENKLAQIRERL 924
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 32/186 (17%)
Query: 109 RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNS 167
R + +T + + TD GL S + LA +V+A+++T NG + V+D
Sbjct: 737 RIDRGRAITEVTIFATDHHGLFSRLAGALAAAGADIVDARIFTMTNGMALDVFTVQDAAG 796
Query: 168 GSPIEDSQQIDRIEARLRNVLKG------DNDIRSAKMTVSMAVTHTERRLHQMMFADRD 221
G E ++ ++ + VL G D R A V H
Sbjct: 797 GGAFESGDKLAKLSVMIEKVLSGQLKPLHDLTKRKAPHASRTRVFHVP------------ 844
Query: 222 YERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATIN 281
P V + N A +++V+ V +DR LL+D+ LT++ + A I+
Sbjct: 845 -------------PRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKIS 891
Query: 282 TAGERA 287
T GE+A
Sbjct: 892 TYGEKA 897
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 110 SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGS 169
+N+ T +E+ G DR GLL ++ L +L + AK+ T+ + + YVKD G
Sbjct: 851 NNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKDV-FGL 909
Query: 170 PIEDSQQIDRIEARLRNVL 188
+ ++ +I RL + L
Sbjct: 910 KVTHENKLAQIRERLLHAL 928
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 54/91 (59%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V+I N++ T+++V+ R G+L E VL+DL+L I+ A I++ G +D F+V
Sbjct: 826 PSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVA 885
Query: 83 DLNGNKLTDESVISYIEQSLETIHYGRSNSF 113
DL G K+++E+ +YI L+ + G +
Sbjct: 886 DLVGQKISNENRRAYITARLKAVMAGEEDEM 916
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 110 SNSF-NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSG 168
+NS N T +E+ DR GLLSE+ AVL+DL + A++ T ++ YV D G
Sbjct: 831 TNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVADL-VG 889
Query: 169 SPIEDSQQIDRIEARLRNVLKGDNDIRSAKM 199
I + + I ARL+ V+ G+ D +M
Sbjct: 890 QKISNENRRAYITARLKAVMAGEEDEMRERM 920
Score = 37.7 bits (86), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 235 PVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P V + N ++V+ V+C DR LL ++ L+D+ + A I T GE+
Sbjct: 826 PSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEK 877
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 51/87 (58%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
TP V I N + T+++V+ R G+L E VL+DL+L I A+I++ G +D F+V
Sbjct: 830 TPEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYV 889
Query: 82 TDLNGNKLTDESVISYIEQSLETIHYG 108
TDL G+K+T E+ I L+ + G
Sbjct: 890 TDLVGSKITSENRQMNIAARLKAVLAG 916
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 110 SNSF-NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSG 168
SN+ N T +E+ G DR GLLSEV AVL+DL + A + T ++ YV D
Sbjct: 836 SNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTDLVGS 895
Query: 169 SPIEDSQQIDRIEARLRNVLKGDNDIRSAKM 199
+++Q++ I ARL+ VL G+ D +M
Sbjct: 896 KITSENRQMN-IAARLKAVLAGEVDEARERM 925
Score = 38.9 bits (89), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 229 RHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
R T P VT+ N ++V+ V+ DRT LL +V L+D+ + A I T GE+
Sbjct: 825 RAFTVTPEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEK 882
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 57.8 bits (138), Expect = 1e-07, Method: Composition-based stats.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 22/175 (12%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIED 173
G+T L + D GL S++ LA S+V+A++ T +G +V+D G E+
Sbjct: 754 GVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQD-GEGCSFEE 812
Query: 174 SQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTH-TERRLHQMMFADRDYERMPVLRHST 232
Q+ R+ + L G DIR + A H T RR+ + +P
Sbjct: 813 PHQLGRLNHLVEQALSGRLDIRKG---IEDASHHSTSRRMRAI--------HVP------ 855
Query: 233 DYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
P V + N A ++V+ V +DR LL DV L+ + A I T G RA
Sbjct: 856 --PRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRA 908
Score = 55.5 bits (132), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRVVIDN T+++V+ R G+L + L+ +L I A+I++ G +DVF+V
Sbjct: 856 PRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFYVR 915
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G K+TD ++ + ++L
Sbjct: 916 DLLGMKITDPVRLARLRETL 935
Score = 37.4 bits (85), Expect = 0.16, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
T +E+ G DR GLL +V + L+ + A + T+ R + YV+D G I D +
Sbjct: 869 TVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFYVRDL-LGMKITDPVR 927
Query: 177 IDRIEARLRNVL 188
+ ARLR L
Sbjct: 928 L----ARLRETL 935
>sp|A6WV84|GLND_OCHA4 [Protein-PII] uridylyltransferase OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=glnD PE=3 SV=1
Length = 934
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 54/90 (60%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSLETIHYGRSNS 112
DL G+K+++ + I + L + G + S
Sbjct: 894 DLVGHKISNATRQGNIRRKLLGVLSGENGS 923
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIED 173
N T +E+ G DR GLLSE+ +++DL + A + T ++ YV D G I +
Sbjct: 844 NKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISN 902
Query: 174 SQQIDRIEARLRNVLKGDNDIRS 196
+ + I +L VL G+N ++
Sbjct: 903 ATRQGNIRRKLLGVLSGENGSKT 925
>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis
(strain HTCC2594) GN=glnD PE=3 SV=1
Length = 919
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV+ DN T+++V++ R +L + L + ++++ A+I++ G D F+VT
Sbjct: 825 PRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVT 884
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G K+TDES + I Q+L
Sbjct: 885 DLTGAKITDESRMDTIRQAL 904
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 36/196 (18%)
Query: 35 ATLVKVDSARRHGILLEAVQV--LTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDE 92
ATLV V +A G+ L N++ + + + +G + +D + V D G +E
Sbjct: 726 ATLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNG-WAIDNYLVQDPVGQPFAEE 784
Query: 93 SVISYIEQSL----------------ETIHYGRSNSFN-------------GLTALELTG 123
++ IEQ++ + R+ +F+ T +E+
Sbjct: 785 RQLARIEQAIADAIANRGELVPKLAKRPLKQTRAGAFDVRPRVLFDNDASGRFTVIEVNA 844
Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEAR 183
DR LL+ + L + Q V A + + R A YV D +G+ I D ++D I
Sbjct: 845 RDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTDL-TGAKITDESRMDTIRQA 903
Query: 184 LRNVLKGDNDIRSAKM 199
L L +D R A++
Sbjct: 904 L---LDAASDARQAEL 916
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 20/173 (11%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDS 174
G T + + D GL + + ++++A++ T A Y+ G P +
Sbjct: 725 GATLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFAEE 784
Query: 175 QQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDY 234
+Q+ RIE + + + ++ +A +R L Q D
Sbjct: 785 RQLARIEQAIADAIAN-----RGELVPKLA----KRPLKQTRAGAFDVR----------- 824
Query: 235 PVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
P V N A ++V+ V +DR LL + L + + +V A I GERA
Sbjct: 825 PRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERA 877
>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=glnD PE=3 SV=1
Length = 934
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIED 173
N T +E+ G DR GLLSE+ +++DL + A + T ++ YV D G I +
Sbjct: 844 NKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISN 902
Query: 174 SQQIDRIEARLRNVLKGDNDIRS 196
+ + I+ +L +L +N R+
Sbjct: 903 ATRQGNIKRKLLALLGAENGART 925
>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=glnD PE=3 SV=1
Length = 934
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIED 173
N T +E+ G DR GLLSE+ +++DL + A + T ++ YV D G I +
Sbjct: 844 NKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISN 902
Query: 174 SQQIDRIEARLRNVLKGDNDIRS 196
+ + I+ +L +L +N R+
Sbjct: 903 ATRQGNIKRKLLALLGAENGART 925
>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1
Length = 934
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIED 173
N T +E+ G DR GLLSE+ +++DL + A + T ++ YV D G I +
Sbjct: 844 NKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISN 902
Query: 174 SQQIDRIEARLRNVLKGDNDIRS 196
+ + I+ +L +L +N R+
Sbjct: 903 ATRQGNIKRKLLALLGAENGART 925
>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1
(strain 9-941) GN=glnD PE=3 SV=1
Length = 934
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIED 173
N T +E+ G DR GLLSE+ +++DL + A + T ++ YV D G I +
Sbjct: 844 NKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISN 902
Query: 174 SQQIDRIEARLRNVLKGDNDIRS 196
+ + I+ +L +L +N R+
Sbjct: 903 ATRQGNIKRKLLALLGAENGART 925
>sp|Q2YNZ1|GLND_BRUA2 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain 2308)
GN=glnD PE=3 SV=1
Length = 934
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIED 173
N T +E+ G DR GLLSE+ +++DL + A + T ++ YV D G I +
Sbjct: 844 NKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISN 902
Query: 174 SQQIDRIEARLRNVLKGDNDIRS 196
+ + I+ +L +L +N R+
Sbjct: 903 ATRQGNIKRKLLALLGAENGART 925
>sp|B2S8D8|GLND_BRUA1 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain S19)
GN=glnD PE=3 SV=1
Length = 934
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIED 173
N T +E+ G DR GLLSE+ +++DL + A + T ++ YV D G I +
Sbjct: 844 NKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISN 902
Query: 174 SQQIDRIEARLRNVLKGDNDIRS 196
+ + I+ +L +L +N R+
Sbjct: 903 ATRQGNIKRKLLALLGAENGART 925
>sp|B0CIQ3|GLND_BRUSI [Protein-PII] uridylyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=glnD PE=3 SV=1
Length = 934
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIED 173
N T +E+ G DR GLLSE+ +++DL + A + T ++ YV D G I +
Sbjct: 844 NKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISN 902
Query: 174 SQQIDRIEARLRNVLKGDNDIRS 196
+ + I+ +L +L +N R+
Sbjct: 903 ATRQGNIKRKLLALLGAENGART 925
>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1
Length = 934
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PRV I+N + T+++V+ R G+L E +++DL+L I A+I++ G +D F+VT
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G+K+++ + I++ L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIED 173
N T +E+ G DR GLLSE+ +++DL + A + T ++ YV D G I +
Sbjct: 844 NKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTDL-VGHKISN 902
Query: 174 SQQIDRIEARLRNVLKGDNDIRS 196
+ + I+ +L +L +N R+
Sbjct: 903 ATRQGNIKRKLLALLGAENGART 925
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V I N + T+++V+ R G+L + V+ DL+L I A I++ G +D F+VT
Sbjct: 827 PSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVT 886
Query: 83 DLNGNKLTDESVISYIEQSLETI 105
DL G K+T+++ + I Q L+ +
Sbjct: 887 DLFGQKVTNDNRQASIAQRLKAV 909
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 26/190 (13%)
Query: 99 EQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA 157
E++L T+ R++SF+ +T + + D LLS + A ++ +A+++T +GR
Sbjct: 713 EKALSTM--VRTHSFHAITEITVLAPDHPRLLSIITGACAAAGANIADAQIFTTSDGRAL 770
Query: 158 SLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVS-MAVTHTERRLHQMM 216
I + N PI++ + R NV K ++ S K + M T T+ R +
Sbjct: 771 DTILI---NREFPIDEDET-----RRGANVGKLIEEVLSGKQRLPEMIATRTKSRRKKSA 822
Query: 217 FADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVF 276
F T P VT+ N ++V+ V+C DR LL D+ + D+ +
Sbjct: 823 F--------------TIPPSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIH 868
Query: 277 HATINTAGER 286
A I T GE+
Sbjct: 869 SARITTFGEK 878
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 104 TIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK 163
TI G SN F T +E+ DR GLL+++ AV+ADL + A++ T ++ YV
Sbjct: 830 TISNGLSNKF---TVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYVT 886
Query: 164 DCNSGSPIEDSQQIDRIEARLRNVLKGDND 193
D D++Q I RL+ V+ D
Sbjct: 887 DLFGQKVTNDNRQAS-IAQRLKAVMSEQED 915
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
PR I N + ++++V+ R G+L E L+DL+L I A+I++ G +D F+VT
Sbjct: 834 PRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVT 893
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G K+ + I+ I L
Sbjct: 894 DLTGQKIDSPARIATIRNRL 913
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 109 RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSG 168
R+ N + +E+ G DR GLLSE+ L+DL + A + T ++ YV D +G
Sbjct: 839 RNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTDL-TG 897
Query: 169 SPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVS 202
I+ +I I RL L+G R K +
Sbjct: 898 QKIDSPARIATIRNRLMATLEGIAPERGGKAKAA 931
Score = 37.4 bits (85), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 30/183 (16%)
Query: 109 RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNS 167
+++ F +T + + D LLS + ++V+A+++T +GR I +
Sbjct: 728 KTHQFEAVTEITVLAQDHPRLLSVIAGACVGAGGNIVDAQIFTTADGRALDTILI----- 782
Query: 168 GSPIEDSQQIDRIE---ARLRNVLKGDNDIRSAKMTV-SMAVTHTERRLHQMMFADRDYE 223
S++ DR E R V + D+ S K + M T+ + +F
Sbjct: 783 ------SREFDRDEDERRRAERVGRLIEDVLSGKSWLPEMIEKRTKPKRGAKVF------ 830
Query: 224 RMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA 283
++P P ++N +SV+ V+ DR LL ++ TL+D+ + A I T
Sbjct: 831 KIP--------PRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTF 882
Query: 284 GER 286
GE+
Sbjct: 883 GEK 885
>sp|B4RC79|GLND_PHEZH [Protein-PII] uridylyltransferase OS=Phenylobacterium zucineum
(strain HLK1) GN=glnD PE=3 SV=1
Length = 938
Score = 51.2 bits (121), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
TP V++DN T+T+V+ R G+L + ++D L I A+I G +D F+V
Sbjct: 830 TPAVMLDNEASETSTVVEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDAFYV 889
Query: 82 TDLNGNKLTD 91
D +G KLTD
Sbjct: 890 VDADGRKLTD 899
Score = 31.2 bits (69), Expect = 9.6, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
T +E +G DR GLL+ + ++D S++ A + + R YV D + G + D+++
Sbjct: 844 TVVEASGRDRPGLLAALARTISDAGLSILSAHIDGYGERAVDAFYVVDAD-GRKLTDARK 902
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V I N++ T+++++ R G+L E VL DL+L I A I++ G +D F+V
Sbjct: 826 PHVTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVI 885
Query: 83 DLNGNKLTDESVISYIEQSLETI 105
DL G K+T+E+ I L+ +
Sbjct: 886 DLVGQKITNENRQGSISVRLKAV 908
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 106 HYGRSNSF-NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164
H SNS N T +E+ DR+GLL+EV AVLADL + A++ T ++ YV D
Sbjct: 827 HVTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVID 886
Query: 165 CNSGSPIEDSQQIDRIEARLRNVLKGDND 193
G I + + I RL+ V+ D
Sbjct: 887 L-VGQKITNENRQGSISVRLKAVMSEQPD 914
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 28/191 (14%)
Query: 99 EQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIA 157
+Q+L T+ R++SF+ +T + + D LLS + A ++ +A+++T +GR
Sbjct: 712 DQALATM--VRTHSFHAITEITVLAPDHPRLLSIIAGACAAAGANIADAQIFTTSDGRAL 769
Query: 158 SLIYVKDCNSGSPIEDSQ--QIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQM 215
I + N PI++ + + + I + +VL G K + T T+ R
Sbjct: 770 DTILI---NREFPIDEDEMRRANTISKMIEDVLAGK------KRLPEVIATRTKGRKRNK 820
Query: 216 MFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVV 275
F T P VT+ N ++V+ ++C DR LL +V L D+ +
Sbjct: 821 TF--------------TVKPHVTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDI 866
Query: 276 FHATINTAGER 286
A I T GE+
Sbjct: 867 HSARITTFGEK 877
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 50/83 (60%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V I N++ T+++V+ R G+L E VL+DL+L I+ A I++ G +D F+VT
Sbjct: 825 PSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVT 884
Query: 83 DLNGNKLTDESVISYIEQSLETI 105
DL G K++ +S + I ++ +
Sbjct: 885 DLVGQKISGDSKRANITARMKAV 907
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 110 SNSF-NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSG 168
+NS N T +E+ DR GLLSE+ AVL+DL + A++ T ++ YV D G
Sbjct: 830 TNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDL-VG 888
Query: 169 SPIEDSQQIDRIEARLRNVLKGDND 193
I + I AR++ V+ + D
Sbjct: 889 QKISGDSKRANITARMKAVMAEEED 913
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 28/182 (15%)
Query: 109 RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNS 167
R++SF+ +T + + D LL+ + A ++V+A+++T +GR I+V S
Sbjct: 719 RTDSFHAITEITVLSPDHPRLLAVIAGACAAAGANIVDAQIFTTSDGRALDTIHV----S 774
Query: 168 GSPIEDSQQIDR---IEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYER 224
+D+ ++ R I + +VL G K + T R F
Sbjct: 775 REFTDDADELRRAATIGRMIEDVLSG------RKRLPEVIATRARNRKKSKAFV------ 822
Query: 225 MPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG 284
+P P V + N ++V+ V+C DR LL ++ L+D+ + A I T G
Sbjct: 823 IP--------PSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFG 874
Query: 285 ER 286
E+
Sbjct: 875 EK 876
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V I+N T+++V R G+L + ++ LNL I A++++ G DVF+VT
Sbjct: 835 PKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVT 894
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G ++T + + I+++L
Sbjct: 895 DLLGARITAPTRQAAIKRAL 914
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 77/175 (44%), Gaps = 25/175 (14%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDS 174
G+T L + D LLS + A ++V+A+++T D + I S
Sbjct: 736 GVTELTILAADHPWLLSIIAGACASAGANIVDAQIYT----------TTDGQALDTIAIS 785
Query: 175 QQIDRIEARLRNVLKGDNDIRSAKMT-VSMAVTHTERRLHQMMFADRDYERMPVLRHSTD 233
++ +R E D R+A++ + V RL +M + +R LR
Sbjct: 786 REYERDE---------DEGRRAARIAEIIEQVLEGRLRLPDVMPSRAAGKR---LRPFVV 833
Query: 234 YPVVTVQN-WADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
P VT+ N W+DR ++++ V DR LLF + ++ + + A + T GERA
Sbjct: 834 EPKVTINNQWSDR-HTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERA 887
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164
T +E++G DR GLL ++ ++ L ++ A V T R + YV D
Sbjct: 848 TMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTD 895
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V+++N T+++V R G+L + ++ LNL I A++++ G DVF+VT
Sbjct: 837 PKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G ++T + + I+++L
Sbjct: 897 DLLGARITAPTRQAAIKRAL 916
Score = 38.9 bits (89), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 38/182 (20%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDS 174
G+T L + D LLS + A ++V+A+++T D + I S
Sbjct: 737 GVTELTIFAADHPWLLSIIAGACASAGANIVDAQIYT----------TTDGQALDTIAIS 786
Query: 175 QQIDRIE------ARLRNVLKG--DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMP 226
++ DR E AR+ +++ D +R + A T
Sbjct: 787 REYDRDEDEGRRAARIGEIIEQVIDGRLRLPDVVARRAAGKTR----------------- 829
Query: 227 VLRHSTDYPVVTVQN-WADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGE 285
LR P V V N W+DR ++V+ V DR LLF + ++ + + A + T GE
Sbjct: 830 -LRPFVVEPKVIVNNQWSDR-HTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGE 887
Query: 286 RA 287
RA
Sbjct: 888 RA 889
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164
T +E++G DR GLL ++ A ++ L ++ A V T R + YV D
Sbjct: 850 TVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTD 897
>sp|Q02RD0|GLND_PSEAB [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=glnD PE=3 SV=1
Length = 900
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 33/204 (16%)
Query: 21 NTPRVVIDNAV---CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFM 76
TP V+I + + + + +A +H V + LNL I+ A I+S +F +
Sbjct: 687 GTPLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTL 746
Query: 77 DVFHVTDLNGNKL-TDESVISYIEQSL--------------------ETIHYG------- 108
D + V D +G+ + + I+ I + L + H+
Sbjct: 747 DTYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTI 806
Query: 109 RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSG 168
+++ ++ LE+ DR GLL+ + + D SV AK+ T R+ + Y+ D +
Sbjct: 807 STDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARN- 865
Query: 169 SPIEDSQQIDRIEARLRNVLKGDN 192
P+ D R++A L L DN
Sbjct: 866 QPLADPDLCKRLQAALVEQLSQDN 889
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSP 170
F + + + D+ + A + L S+ +A++ T + Y V D + S
Sbjct: 700 EFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSI 759
Query: 171 IEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
+ ++I I L + LK +D T +RR+ + L+H
Sbjct: 760 GNNPERIAEIREGLIDALKNPDDY----------PTIIQRRVPRQ------------LKH 797
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ A R SV+ V DR LL + D + V +A I T GER
Sbjct: 798 FAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGER 853
>sp|Q9Z9H0|GLND_PSEAE [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=glnD
PE=3 SV=2
Length = 900
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 33/204 (16%)
Query: 21 NTPRVVIDNAV---CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFM 76
TP V+I + + + + +A +H V + LNL I+ A I+S +F +
Sbjct: 687 GTPLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTL 746
Query: 77 DVFHVTDLNGNKL-TDESVISYIEQSL--------------------ETIHYG------- 108
D + V D +G+ + + I+ I + L + H+
Sbjct: 747 DTYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTI 806
Query: 109 RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSG 168
+++ ++ LE+ DR GLL+ + + D SV AK+ T R+ + Y+ D +
Sbjct: 807 STDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARN- 865
Query: 169 SPIEDSQQIDRIEARLRNVLKGDN 192
P+ D R++A L L DN
Sbjct: 866 QPLADPDLCKRLQAALVEQLSQDN 889
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSP 170
F + + + D+ + A + L S+ +A++ T + Y V D + S
Sbjct: 700 EFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSI 759
Query: 171 IEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
+ ++I I L + LK +D T +RR+ + L+H
Sbjct: 760 GNNPERIAEIREGLIDALKNPDDY----------PTIIQRRVPRQ------------LKH 797
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ A R SV+ V DR LL + D + V +A I T GER
Sbjct: 798 FAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGER 853
>sp|A6V1D0|GLND_PSEA7 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
PA7) GN=glnD PE=3 SV=1
Length = 900
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 33/204 (16%)
Query: 21 NTPRVVIDNAV---CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFM 76
TP V+I + + + + +A +H V + LNL I+ A I+S +F +
Sbjct: 687 GTPLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTL 746
Query: 77 DVFHVTDLNGNKL-TDESVISYIEQSL--------------------ETIHYG------- 108
D + V D +G+ + + I+ I + L + H+
Sbjct: 747 DTYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTI 806
Query: 109 RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSG 168
+++ ++ LE+ DR GLL+ + + D SV AK+ T R+ + Y+ D +
Sbjct: 807 STDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARN- 865
Query: 169 SPIEDSQQIDRIEARLRNVLKGDN 192
P+ D R++A L L DN
Sbjct: 866 QPLADPDLCKRLQAALVEQLSQDN 889
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSP 170
F + + + D+ + A + L S+ +A++ T + Y V D + S
Sbjct: 700 EFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSI 759
Query: 171 IEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
+ ++I I L + LK +D T +RR+ + L+H
Sbjct: 760 GNNPERIAEIREGLIDALKNPDDY----------PTIIQRRVPRQ------------LKH 797
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ A R SV+ V DR LL + D + V +A I T GER
Sbjct: 798 FAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGER 853
>sp|B7V7F5|GLND_PSEA8 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
LESB58) GN=glnD PE=3 SV=1
Length = 900
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 33/204 (16%)
Query: 21 NTPRVVIDNAV---CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFM 76
TP V+I + + + + +A +H V + LNL I+ A I+S +F +
Sbjct: 687 GTPLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTL 746
Query: 77 DVFHVTDLNGNKL-TDESVISYIEQSL--------------------ETIHYG------- 108
D + V D +G+ + + I+ I + L + H+
Sbjct: 747 DTYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTI 806
Query: 109 RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSG 168
+++ ++ LE+ DR GLL+ + + D SV AK+ T R+ + Y+ D +
Sbjct: 807 STDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDARN- 865
Query: 169 SPIEDSQQIDRIEARLRNVLKGDN 192
P+ D R++A L L DN
Sbjct: 866 QPLADPDLCKRLQAALVEQLSQDN 889
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSP 170
F + + + D+ + A + L S+ +A++ T + Y V D + S
Sbjct: 700 EFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSI 759
Query: 171 IEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
+ ++I I L + LK +D T +RR+ + L+H
Sbjct: 760 GNNPERIAEIREGLIDALKNPDDY----------PTIIQRRVPRQ------------LKH 797
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ A R SV+ V DR LL + D + V +A I T GER
Sbjct: 798 FAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGER 853
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V I+N T+++V R G+L E ++ LNL I A++++ G DVF+VT
Sbjct: 836 PEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 895
Query: 83 DLNGNKLTDESVISYIEQSLETIHYG 108
DL G ++ + S I+ +L + G
Sbjct: 896 DLLGAQINAPTRQSAIKSALTHVMAG 921
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 78/184 (42%), Gaps = 35/184 (19%)
Query: 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLI-----YVKD 164
+ G+T L + D LLS + A ++V+A+++T +GR I Y +D
Sbjct: 733 DEVRGVTELTIFAADHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTISISREYDRD 792
Query: 165 CNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYER 224
+ G ++ RI + +VL+G K+ + V R F
Sbjct: 793 EDEG------RRATRIGEMIEDVLEG-------KLRLPEVVARRTVRSKARPFVIE---- 835
Query: 225 MPVLRHSTDYPVVTVQN-WADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA 283
P VT+ N W+DR Y+V+ V DR LL+++ ++ + + A + T
Sbjct: 836 ----------PEVTINNQWSDR-YTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATF 884
Query: 284 GERA 287
GERA
Sbjct: 885 GERA 888
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
T +E++G DR GLL E+ ++ L ++ A V T R + YV D G+ I +
Sbjct: 849 TVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDL-LGAQINAPTR 907
Query: 177 IDRIEARLRNVLKGDNDIRSA 197
I++ L +V+ GD ++ A
Sbjct: 908 QSAIKSALTHVMAGDKAVQPA 928
>sp|P36223|GLND_AZOVI [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii GN=glnD
PE=3 SV=1
Length = 899
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 31/197 (15%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMDVFHVTDLNGNKLTDES 93
AT + + + +H V + LNL I A I+S +F +D + V D +G + +
Sbjct: 704 ATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDTYIVLDADGGSIGNNP 763
Query: 94 V-ISYIEQSL--------------------ETIHYG-------RSNSFNGLTALELTGTD 125
I I Q L + H+ ++++ +T LE+ D
Sbjct: 764 ARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIQNDALRPVTILEIIAPD 823
Query: 126 RVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIE-ARL 184
R GLL+ + + D S+ AK+ T R+ + +V D ++ P+ D + R++ A
Sbjct: 824 RPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHN-QPLSDPELCARLQLAIA 882
Query: 185 RNVLKGDNDIRSAKMTV 201
+ GD+ I+ +++++
Sbjct: 883 EQLADGDSYIQPSRISI 899
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 23/178 (12%)
Query: 110 SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSG 168
F G T + + D+ + A + L S+ +A+V T + Y V D + G
Sbjct: 698 QREFEGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDTYIVLDADGG 757
Query: 169 SPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVL 228
S + +I I L L+ D T +RR+ + L
Sbjct: 758 SIGNNPARIQEIRQGLVEALRNPADY----------PTIIQRRVPRQ------------L 795
Query: 229 RHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
+H P VT+QN A R +++ + DR LL + D + + +A I T GER
Sbjct: 796 KHFAFAPQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGER 853
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
P+V I N T++++ + R G+L ++ D +L ++ A I++ G DVF V
Sbjct: 801 APQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFV 860
Query: 82 TDLNGNKLTDESVISYIE 99
TD + L+D + + ++
Sbjct: 861 TDAHNQPLSDPELCARLQ 878
>sp|C1DSU8|GLND_AZOVD [Protein-PII] uridylyltransferase OS=Azotobacter vinelandii (strain
DJ / ATCC BAA-1303) GN=glnD PE=3 SV=1
Length = 899
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 86/197 (43%), Gaps = 31/197 (15%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMDVFHVTDLNGNKLTDES 93
AT + + + +H V + LNL I A I+S +F +D + V D +G + +
Sbjct: 704 ATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDTYIVLDADGGSIGNNP 763
Query: 94 V-ISYIEQSL--------------------ETIHYG-------RSNSFNGLTALELTGTD 125
I I Q L + H+ ++++ +T LE+ D
Sbjct: 764 ARIQEIRQGLVEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIQNDALRPVTILEIIAPD 823
Query: 126 RVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIE-ARL 184
R GLL+ + + D S+ AK+ T R+ + +V D ++ P+ D + R++ A
Sbjct: 824 RPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFVTDAHN-QPLSDPELCARLQLAIA 882
Query: 185 RNVLKGDNDIRSAKMTV 201
+ GD+ I+ +++++
Sbjct: 883 EQLADGDSYIQPSRISI 899
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 69/178 (38%), Gaps = 23/178 (12%)
Query: 110 SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSG 168
F G T + + D+ + A + L S+ +A+V T + Y V D + G
Sbjct: 698 QREFEGATQIFIYAPDQHDFFAVTVAAMDQLNLSIHDARVITSTSQFTLDTYIVLDADGG 757
Query: 169 SPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVL 228
S + +I I L L+ D T +RR+ + L
Sbjct: 758 SIGNNPARIQEIRQGLVEALRNPADY----------PTIIQRRVPRQ------------L 795
Query: 229 RHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
+H P VT+QN A R +++ + DR LL + D + + +A I T GER
Sbjct: 796 KHFAFAPQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGER 853
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
P+V I N T++++ + R G+L ++ D +L ++ A I++ G DVF V
Sbjct: 801 APQVTIQNDALRPVTILEIIAPDRPGLLARIGKIFLDFDLSLQNAKIATLGERVEDVFFV 860
Query: 82 TDLNGNKLTDESVISYIE 99
TD + L+D + + ++
Sbjct: 861 TDAHNQPLSDPELCARLQ 878
>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1
Length = 929
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V I+N T+++V R G+L + ++ LNL I A++++ G DVF+VT
Sbjct: 835 PEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVT 894
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G ++T + + I+++L
Sbjct: 895 DLLGAQITAPTRQAAIKRAL 914
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLI-----YVKDCNSG 168
+T L + D LLS + A ++V+A+++T +GR I Y +D + G
Sbjct: 733 AVTELTILAVDHPWLLSVIAGACASAGANIVDAQIYTTTDGRALDTISISREYDRDEDEG 792
Query: 169 SPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVL 228
++ RI + VL+G +R + A + ++ +L +
Sbjct: 793 ------RRATRIGETIEEVLEGK--LRLPEAVARRASSGSKAKLRAFVVE---------- 834
Query: 229 RHSTDYPVVTVQN-WADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
P V + N W+DR Y+V+ V DR LL+ + ++ + + A + T GERA
Sbjct: 835 ------PEVEINNNWSDR-YTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERA 887
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164
T +E++G DR GLL ++ ++ L ++ A V T R + YV D
Sbjct: 848 TVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTD 895
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V I+N T+++V R G+L E ++ LNL I A++++ G DVF+VT
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G ++ + + I+ +L
Sbjct: 897 DLLGAQINAPTRQAAIKSAL 916
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 32/179 (17%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLI-----YVKDCNSG 168
G+T L + D LLS + A ++V+A+++T +GR I Y +D + G
Sbjct: 737 GVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISREYERDEDEG 796
Query: 169 SPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVL 228
++ RI + VL+G ++ ++A T + H+ +
Sbjct: 797 ------RRATRIGETIEQVLEG-----KLRLPDAVARRTTRGKQHKAFSVE--------- 836
Query: 229 RHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
P V++ N Y+V+ V DR LL+++ ++ + + A + T GERA
Sbjct: 837 ------PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERA 889
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164
T +E++G DR GLL E+ ++ L ++ A V T R + YV D
Sbjct: 850 TVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD 897
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V I+N T+++V R G+L E ++ LNL I A++++ G DVF+VT
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL G ++ + + I+ +L
Sbjct: 897 DLLGAQINAPTRQAAIKSAL 916
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 76/179 (42%), Gaps = 32/179 (17%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLI-----YVKDCNSG 168
G+T L + D LLS + A ++V+A+++T +GR I Y +D + G
Sbjct: 737 GVTELTIFAMDHPWLLSIIAGACASAGANIVDAQIYTTTDGRALDTIAISREYERDEDEG 796
Query: 169 SPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVL 228
++ RI + VL+G ++ ++A T + H+ +
Sbjct: 797 ------RRATRIGETIEQVLEG-----KLRLPDAVARRTTRGKQHKAFSVE--------- 836
Query: 229 RHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
P V++ N Y+V+ V DR LL+++ ++ + + A + T GERA
Sbjct: 837 ------PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERA 889
Score = 35.0 bits (79), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
T +E++G DR GLL E+ ++ L ++ A V T R + YV D G+ I +
Sbjct: 850 TVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTDL-LGAQINAPTR 908
Query: 177 IDRIEARLRNVLKGDN 192
I++ L ++L D+
Sbjct: 909 QAAIKSALLHLLASDD 924
>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain
ymp) GN=glnD PE=3 SV=1
Length = 899
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 36/179 (20%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMDVFHVTDLNGNKLTD-- 91
T + + + +H V ++ LNL I A I+S +F +D + V D +G + D
Sbjct: 704 GTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSTSQFTLDTYVVLDADGGSIGDNP 763
Query: 92 -------ESVISYIEQSLE----------------------TIHYGRSNSFNGLTALELT 122
E +I ++ E TIH +++ +T LELT
Sbjct: 764 ARIKQIREGLIEALKNPDEYPTIIQRRVPRQLKHFAFAPQVTIH---NDAQRPVTILELT 820
Query: 123 GTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIE 181
DR GLL+ + + + S+ AK+ T R+ + +V D N+ P+ D + R++
Sbjct: 821 APDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTDANN-QPLSDPELCARLQ 878
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
P+V I N T++++ + R G+L ++ + +L ++ A I++ G DVF V
Sbjct: 801 APQVTIHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFV 860
Query: 82 TDLNGNKLTDESVISYIEQSL 102
TD N L+D + + +++++
Sbjct: 861 TDANNQPLSDPELCARLQETI 881
Score = 38.5 bits (88), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYV-KDCNSGSP 170
F G T + + D+ + A ++ L ++ +A++ T + YV D + GS
Sbjct: 700 EFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSTSQFTLDTYVVLDADGGSI 759
Query: 171 IEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
++ +I +I L LK ++ T +RR+ + L+H
Sbjct: 760 GDNPARIKQIREGLIEALKNPDEY----------PTIIQRRVPRQ------------LKH 797
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ N A R +++ + DR LL + + + + +A I T GER
Sbjct: 798 FAFAPQVTIHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGER 853
>sp|Q9AC53|GLND_CAUCR [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=glnD PE=3 SV=1
Length = 940
Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 26/170 (15%)
Query: 121 LTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPI--EDSQQI 177
+ DR GL +++ ++ L +VV A+V+T G+ + YV+D +G+P E+ + +
Sbjct: 740 IAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDV-TGAPFGCENPRAL 798
Query: 178 DRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVV 237
R+ L KGD + V + R A P V
Sbjct: 799 RRLADALEAAGKGD------ALAVEPRRGSEQTRAAAFAIA----------------PSV 836
Query: 238 TVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
T+ N A +VV +DR LL + TL D + A I+ GERA
Sbjct: 837 TIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERA 886
Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 34/69 (49%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V IDN AT+V+ R G+L + L D L I+ A+I G +D F+V
Sbjct: 834 PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ 893
Query: 83 DLNGNKLTD 91
G K+TD
Sbjct: 894 TTEGGKVTD 902
Score = 34.3 bits (77), Expect = 1.1, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 33/173 (19%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDL--NLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDE 92
A V + + R G+ + ++ L N++ + + S G+ +DVF+V D+ G E
Sbjct: 735 AAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQA-LDVFYVQDVTGAPFGCE 793
Query: 93 S--VISYIEQSLETIHYG--------------RSNSF-------------NGLTALELTG 123
+ + + +LE G R+ +F N T +E +G
Sbjct: 794 NPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASG 853
Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
DR GLL + LAD S+ A + + R YV+ G + D+++
Sbjct: 854 RDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ-TTEGGKVTDTRK 905
>sp|B8GWX0|GLND_CAUCN [Protein-PII] uridylyltransferase OS=Caulobacter crescentus (strain
NA1000 / CB15N) GN=glnD PE=3 SV=1
Length = 940
Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 26/170 (15%)
Query: 121 LTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPI--EDSQQI 177
+ DR GL +++ ++ L +VV A+V+T G+ + YV+D +G+P E+ + +
Sbjct: 740 IAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQALDVFYVQDV-TGAPFGCENPRAL 798
Query: 178 DRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVV 237
R+ L KGD + V + R A P V
Sbjct: 799 RRLADALEAAGKGD------ALAVEPRRGSEQTRAAAFAIA----------------PSV 836
Query: 238 TVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
T+ N A +VV +DR LL + TL D + A I+ GERA
Sbjct: 837 TIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERA 886
Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 34/69 (49%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V IDN AT+V+ R G+L + L D L I+ A+I G +D F+V
Sbjct: 834 PSVTIDNDASNDATVVEASGRDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ 893
Query: 83 DLNGNKLTD 91
G K+TD
Sbjct: 894 TTEGGKVTD 902
Score = 34.3 bits (77), Expect = 1.1, Method: Composition-based stats.
Identities = 39/173 (22%), Positives = 70/173 (40%), Gaps = 33/173 (19%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDL--NLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDE 92
A V + + R G+ + ++ L N++ + + S G+ +DVF+V D+ G E
Sbjct: 735 AAEVVIAAKDRRGLFADLALAISSLGGNVVGARVFTSRQGQA-LDVFYVQDVTGAPFGCE 793
Query: 93 S--VISYIEQSLETIHYG--------------RSNSF-------------NGLTALELTG 123
+ + + +LE G R+ +F N T +E +G
Sbjct: 794 NPRALRRLADALEAAGKGDALAVEPRRGSEQTRAAAFAIAPSVTIDNDASNDATVVEASG 853
Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
DR GLL + LAD S+ A + + R YV+ G + D+++
Sbjct: 854 RDRPGLLHALAKTLADSALSIQSAHIDGYGERAVDAFYVQ-TTEGGKVTDTRK 905
>sp|Q5NPH0|GLND_ZYMMO [Protein-PII] uridylyltransferase OS=Zymomonas mobilis subsp.
mobilis (strain ATCC 31821 / ZM4 / CP4) GN=glnD PE=3
SV=1
Length = 926
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V IDN T+++V++ R +L + L + L I A+I++ G +DVF+V+
Sbjct: 835 PLVFIDNQASDRFTVIEVNAQDRPALLHDLGCALFNARLTISSAHIATYGERAVDVFYVS 894
Query: 83 DLNGNKLTDESVISYIEQSL 102
DL +K+T+++ + IE+ L
Sbjct: 895 DLFSHKITNQNRLKAIEKRL 914
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 82/204 (40%), Gaps = 32/204 (15%)
Query: 94 VISYIEQSLETIHYGRSNSFNG-------LTALELTGTDRVGLLSEVFAVLADLQCSVVE 146
+ + ++Q ++T G+S S G T + L D G + + ++++
Sbjct: 706 IAANMQQIIDTDSKGQSISVRGHEMPAYDATMISLYAIDHPGFFYRISGAIHATGGNILD 765
Query: 147 AKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVT 206
A++ T +A + + G I+ + ++R+ + + + IRS+ ++
Sbjct: 766 ARIHTTRDGMAMDNLLVQNSQGGMIKSGEHLNRMMQAIEDA--ATSHIRSSNKLAAL--- 820
Query: 207 HTERRLHQMMFADRDYERMPVLRHSTDY---PVVTVQNWADRSYSVVNVQCKDRTKLLFD 263
R P+ + P+V + N A ++V+ V +DR LL D
Sbjct: 821 -----------------RPPLFWRGKAFHVEPLVFIDNQASDRFTVIEVNAQDRPALLHD 863
Query: 264 VVCTLTDMEYVVFHATINTAGERA 287
+ C L + + A I T GERA
Sbjct: 864 LGCALFNARLTISSAHIATYGERA 887
>sp|Q2GAJ4|GLND_NOVAD [Protein-PII] uridylyltransferase OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=glnD PE=3 SV=1
Length = 912
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P V+ DN T+++V + R +L + L + L++ A+I++ G +D F+VT
Sbjct: 820 PIVIFDNKASNRFTVIEVGARDRPALLNRLARALFEARLIVHSAHIATYGERAVDTFYVT 879
Query: 83 DLNGNKLTDESVISYIEQSL 102
D+ G K+ E+ + +E+ L
Sbjct: 880 DVLGEKVDSEARMKAVEKRL 899
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 30/178 (16%)
Query: 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIED 173
G T + + D GL + + ++++A++ T NG V+D G P+ +
Sbjct: 720 GATLVTVLAADHPGLFYRIAGGIHLAGGNIIDARIHTARNGTAVDNFLVQDP-LGRPLNE 778
Query: 174 SQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTD 233
+ QI+R++ + + L K+ +A P+ R D
Sbjct: 779 ASQIERLKNAIADALAN-----RVKLVPQLAAR-------------------PLARPRAD 814
Query: 234 ----YPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA 287
P+V N A ++V+ V +DR LL + L + +V A I T GERA
Sbjct: 815 AFDVRPIVIFDNKASNRFTVIEVGARDRPALLNRLARALFEARLIVHSAHIATYGERA 872
>sp|A4VJR9|GLND_PSEU5 [Protein-PII] uridylyltransferase OS=Pseudomonas stutzeri (strain
A1501) GN=glnD PE=3 SV=1
Length = 900
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V I N T++++ + R G+L Q+ D +L ++ A I++ G DVF VT
Sbjct: 802 PQVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVT 861
Query: 83 DLNGNKLTDESVISYIEQSL 102
D + L+D + ++Q++
Sbjct: 862 DADNQPLSDPQLCLRLQQAI 881
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 73/176 (41%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPI 171
F G T + + D+ + A + L ++ +A++ T + + Y+ GSPI
Sbjct: 700 EFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARILTSSSQFTLDTYIVLEADGSPI 759
Query: 172 -EDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
+ ++I+ I + L L+ +D +T +RR+ + L+H
Sbjct: 760 GNNPERIEEIRSGLIAALRNPDDY----------LTIIQRRVPRQ------------LKH 797
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ N R +++ + DR LL V D + V +A I T GER
Sbjct: 798 FAFPPQVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGER 853
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQ 176
T LE+ DR GLL+ V + D SV AK+ T R+ + +V D ++ P+ D Q
Sbjct: 815 TILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTDADN-QPLSDPQL 873
Query: 177 IDRIEARLRNVLKGDNDIRSAKMTV 201
R++ + L+ +N+ + + ++
Sbjct: 874 CLRLQQAIIKELQQENEQQPSPSSI 898
>sp|Q3KHB4|GLND_PSEPF [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf0-1) GN=glnD PE=3 SV=1
Length = 900
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 36/172 (20%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMDVFHVTDLNGNKLTDES 93
T + + + +H V + LNL I A I+S +F +D + V D +G+ + D
Sbjct: 704 GTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARVITSSSQFTLDTYIVLDTDGDSIGDNP 763
Query: 94 V-ISYIEQSLE------------------------------TIHYGRSNSFNGLTALELT 122
V + I L TIH +++ +T LELT
Sbjct: 764 VRVKQIRDGLTEALRNPADYPTIIQRRVPRQLKHFAFAPQVTIH---NDAQRPVTVLELT 820
Query: 123 GTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDS 174
DR GLL+ V + + S+ AK+ T R+ + ++ D ++ P+ D
Sbjct: 821 APDRPGLLARVGGIFLEFDLSLQNAKIATLGERVEDVFFITDAHN-QPLSDP 871
Score = 38.1 bits (87), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
P+V I N T++++ + R G+L + + +L ++ A I++ G DVF +
Sbjct: 801 APQVTIHNDAQRPVTVLELTAPDRPGLLARVGGIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 82 TDLNGNKLTDESVISYIEQSL 102
TD + L+D + S ++ ++
Sbjct: 861 TDAHNQPLSDPLLCSRLQDAI 881
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPI 171
F G T + + D+ + A + L ++ +A+V T + + Y+ G I
Sbjct: 700 EFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARVITSSSQFTLDTYIVLDTDGDSI 759
Query: 172 EDSQ-QIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
D+ ++ +I L L+ D T +RR+ + L+H
Sbjct: 760 GDNPVRVKQIRDGLTEALRNPADY----------PTIIQRRVPRQ------------LKH 797
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ N A R +V+ + DR LL V + + + +A I T GER
Sbjct: 798 FAFAPQVTIHNDAQRPVTVLELTAPDRPGLLARVGGIFLEFDLSLQNAKIATLGER 853
>sp|Q3J5H6|GLND_RHOS4 [Protein-PII] uridylyltransferase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=glnD PE=3 SV=1
Length = 930
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 27/164 (16%)
Query: 124 TDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEA 182
D G+ S + LA + +VV+A+ +T +G ++ +++D + GSP E S+ + R+ +
Sbjct: 748 ADHPGIFSRLAGALALVGANVVDARTYTTKDGYATAVFWIQD-SEGSPYEISR-LPRLTS 805
Query: 183 RLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDY--ERMPVLRHSTDYPVVTVQ 240
+ LKG+ R A DRD +R R T +
Sbjct: 806 MIDKTLKGEVVAREA-------------------LKDRDKLKKREAQFRFPTH---IAFD 843
Query: 241 NWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG 284
N Y+++ V +DR LL+D+ TL + A I T G
Sbjct: 844 NEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYG 887
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 25 VVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDL 84
+ DN T+++VD+ R G+L + + L N+ I A I++ G +D F+V D+
Sbjct: 840 IAFDNEGSDIYTIIEVDTRDRPGLLYDLTRTLAANNIYIASAVIATYGAQVVDSFYVKDM 899
Query: 85 NGNKLTDESVISYIEQSL 102
G KL ++ +E+ L
Sbjct: 900 FGLKLHQKNRQETLEKKL 917
>sp|C3K5E4|GLND_PSEFS [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain SBW25) GN=glnD PE=3 SV=1
Length = 900
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 30/176 (17%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMDVFHVTDLNGNKLTDES 93
T + + + +H V + LNL I A I+S +F +D + V D G + D
Sbjct: 704 GTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARVITSSSQFTLDTYIVLDTEGESIGDNP 763
Query: 94 V-ISYIEQSL--------------------ETIHYG-------RSNSFNGLTALELTGTD 125
V + I + L + H+ +++ +T LEL+ D
Sbjct: 764 VRVKKIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFAPQVTISNDAQRPVTVLELSAPD 823
Query: 126 RVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIE 181
R GLL+ + + + S+ AK+ T R+ + ++ D ++ P+ D + R++
Sbjct: 824 RPGLLARIGGIFLEFDLSLQNAKIATLGERVEDVFFITDADN-QPLSDPELCRRLQ 878
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPI 171
F G T + + D+ + A + L ++ +A+V T + + Y+ G I
Sbjct: 700 EFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARVITSSSQFTLDTYIVLDTEGESI 759
Query: 172 EDSQ-QIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
D+ ++ +I L L+ +D T +RR+ + L+H
Sbjct: 760 GDNPVRVKKIREGLTEALRNPDDY----------PTIIQRRVPRQ------------LKH 797
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ N A R +V+ + DR LL + + + + +A I T GER
Sbjct: 798 FAFAPQVTISNDAQRPVTVLELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGER 853
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 41/81 (50%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
P+V I N T++++ + R G+L + + +L ++ A I++ G DVF +
Sbjct: 801 APQVTISNDAQRPVTVLELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 82 TDLNGNKLTDESVISYIEQSL 102
TD + L+D + ++ ++
Sbjct: 861 TDADNQPLSDPELCRRLQDAI 881
>sp|Q886P5|GLND_PSESM [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
tomato (strain DC3000) GN=glnD PE=3 SV=1
Length = 898
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
P+V I N T++++ + R G+L ++ + +L ++ A I++ G DVF +
Sbjct: 800 APQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFI 859
Query: 82 TDLNGNKLTDESVISYIEQSL 102
TD N L+D + S +++++
Sbjct: 860 TDANNQPLSDPQLCSQLQEAI 880
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 104 TIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK 163
TIH +++ +T LEL DR GLL+ + + + S+ AK+ T R+ + ++
Sbjct: 804 TIH---NDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFIT 860
Query: 164 DCNSGSPIEDSQ 175
D N+ P+ D Q
Sbjct: 861 DANN-QPLSDPQ 871
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSP 170
F G T + + D+ + A + L ++ +A++ T + + Y V D GS
Sbjct: 699 EFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDHEGGSI 758
Query: 171 IEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
+ ++I I L L+ +D ++ R+L FA
Sbjct: 759 GNNPERIQDIRDGLTEALRNPDDY------PTIIKRRVPRQLKHFAFA------------ 800
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ N A R +V+ + DR LL + + + + +A I T GER
Sbjct: 801 ----PQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGER 852
>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
W619) GN=glnD PE=3 SV=1
Length = 900
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 74/176 (42%), Gaps = 30/176 (17%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMDVFHVTDLNGNKLTDES 93
T + + + +H V ++ LNL I A I+S +F +D + V D +G + D
Sbjct: 704 GTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNP 763
Query: 94 -----------------------VISYIEQSLETIHYGR-----SNSFNGLTALELTGTD 125
+ + + L+ ++ +++ +T LE+T D
Sbjct: 764 QRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFNFPPQVTILNDAQRAVTILEITAPD 823
Query: 126 RVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIE 181
R GLL+ + + + S+ AK+ T R+ + ++ D ++ P+ D Q R++
Sbjct: 824 RPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADN-QPLSDPQLCSRLQ 878
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V I N T++++ + R G+L ++ + +L ++ A I++ G DVF +T
Sbjct: 802 PQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Query: 83 DLNGNKLTDESVISYIEQSL 102
D + L+D + S +++++
Sbjct: 862 DADNQPLSDPQLCSRLQEAI 881
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSP 170
F G T + + D+ + A ++ L ++ +A++ T + + Y V D + GS
Sbjct: 700 EFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSI 759
Query: 171 IEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
++ Q++ +I L L+ D T +RR+ + L+H
Sbjct: 760 GDNPQRVKQIRDGLTEALRNPEDY----------PTIIQRRVPRQ------------LKH 797
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ N A R+ +++ + DR LL + + + + +A I T GER
Sbjct: 798 FNFPPQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGER 853
>sp|Q4KHH8|GLND_PSEF5 [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf-5 / ATCC BAA-477) GN=glnD PE=3 SV=1
Length = 900
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPI 171
F G T + + D+ + A + L ++ +A++ T + + Y+ N G I
Sbjct: 700 EFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDNDGESI 759
Query: 172 -EDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
+ Q++++I L + L+ +D T +RR+ + L+H
Sbjct: 760 GNNPQRVEQIRKGLTDALRNPDDY----------PTIIQRRVPRQ------------LKH 797
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ N A R +V+ + DR LL + + + + +A I T GER
Sbjct: 798 FAFAPEVTIHNDAQRPVTVLELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGER 853
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 104 TIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK 163
TIH +++ +T LEL+ DR GLL+ + + + S+ AK+ T R+ + ++
Sbjct: 805 TIH---NDAQRPVTVLELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Query: 164 DCNSGSPIEDSQQIDRIE 181
D ++ P+ D Q R++
Sbjct: 862 DAHN-QPLSDPQLCSRLQ 878
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
P V I N T++++ + R G+L ++ + +L ++ A I++ G DVF +
Sbjct: 801 APEVTIHNDAQRPVTVLELSAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 82 TDLNGNKLTDESVISYIEQSL 102
TD + L+D + S ++ ++
Sbjct: 861 TDAHNQPLSDPQLCSRLQDAI 881
>sp|Q48F57|GLND_PSE14 [Protein-PII] uridylyltransferase OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=glnD PE=3 SV=1
Length = 898
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%)
Query: 22 TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHV 81
P+V I N T++++ + R G+L ++ + +L ++ A I++ G DVF +
Sbjct: 800 APQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFI 859
Query: 82 TDLNGNKLTDESVISYIEQSL 102
TD N + L+D + S ++ ++
Sbjct: 860 TDANNHPLSDPQLCSQLQDAI 880
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 36/173 (20%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMDVFHVTDLNGNKLTD-- 91
T + + + +H V + LNL I A I+S +F +D + V D G + D
Sbjct: 703 GTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSKFTLDTYIVLDNEGGSIGDNP 762
Query: 92 ---ESVISYIEQSLE--------------------------TIHYGRSNSFNGLTALELT 122
+ + + + ++L TIH +++ +T LEL
Sbjct: 763 ERVQEIRNGLTEALRNPDDYPTIIKRRVPRQLKHFAFAPQVTIH---NDAQRPVTVLELL 819
Query: 123 GTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQ 175
DR GLL+ + + + S+ AK+ T R+ + ++ D N+ P+ D Q
Sbjct: 820 APDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANN-HPLSDPQ 871
Score = 38.9 bits (89), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPI 171
F G T + + D+ + A + L ++ +A++ T + + Y+ N G I
Sbjct: 699 EFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARIITSSSKFTLDTYIVLDNEGGSI 758
Query: 172 EDS-QQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
D+ +++ I L L+ +D ++ R+L FA
Sbjct: 759 GDNPERVQEIRNGLTEALRNPDDY------PTIIKRRVPRQLKHFAFA------------ 800
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ N A R +V+ + DR LL + + + + +A I T GER
Sbjct: 801 ----PQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGER 852
>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
GB-1) GN=glnD PE=3 SV=1
Length = 900
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V I N T++++ + R G+L ++ + +L ++ A I++ G DVF +T
Sbjct: 802 PQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Query: 83 DLNGNKLTDESVISYIEQSL 102
D + L+D + S +++++
Sbjct: 862 DADNQPLSDPQLCSRLQEAI 881
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 30/176 (17%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMDVFHVTDLNGNKLTDES 93
T + + + +H V ++ LNL I A I+S +F +D + V D +G + D
Sbjct: 704 GTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNP 763
Query: 94 -----------------------VISYIEQSLETIHYGR-----SNSFNGLTALELTGTD 125
+ + + L+ + +++ +T LE+T D
Sbjct: 764 QRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPD 823
Query: 126 RVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIE 181
R GLL+ + + + S+ AK+ T R+ + ++ D ++ P+ D Q R++
Sbjct: 824 RPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADN-QPLSDPQLCSRLQ 878
Score = 39.3 bits (90), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSP 170
F G T + + D+ + A ++ L ++ +A++ T + + Y V D + GS
Sbjct: 700 EFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSI 759
Query: 171 IEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
++ Q++ +I L L+ D T +RR+ + L+H
Sbjct: 760 GDNPQRVKQIRDGLTEALRNPEDY----------PTIIQRRVPRQ------------LKH 797
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ N A R +++ + DR LL + + + + +A I T GER
Sbjct: 798 FDFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGER 853
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 86/197 (43%), Gaps = 32/197 (16%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMDVFHVTDLNGNKLTD-- 91
T + + + +H V + LNL I A I+S +F +D + V D +G + D
Sbjct: 704 GTQIFIYAPDQHDFFAVTVAAMAQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNP 763
Query: 92 ---ESVISYIEQSLETI----------------HYG-------RSNSFNGLTALELTGTD 125
+ + + ++L T H+ +++ +T LE+T D
Sbjct: 764 QRVKQIRDGLTEALRTPEDYPAIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPD 823
Query: 126 RVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRI-EARL 184
R GLL+ + + + S+ AK+ T R+ + ++ D ++ P+ D Q R+ EA +
Sbjct: 824 RPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITDADN-QPLSDPQLCSRLQEAII 882
Query: 185 RNVLKGD-NDIRSAKMT 200
+ + G ++ ++MT
Sbjct: 883 QQLQAGQASEASPSRMT 899
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSP 170
F G T + + D+ + A +A L ++ +A++ T + + Y V D + GS
Sbjct: 700 EFEGGTQIFIYAPDQHDFFAVTVAAMAQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSI 759
Query: 171 IEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
++ Q++ +I L L+ D + +RR+ + L+H
Sbjct: 760 GDNPQRVKQIRDGLTEALRTPEDYPAI----------IQRRVPRQ------------LKH 797
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ N A R +++ + DR LL + + + + +A I T GER
Sbjct: 798 FDFPPQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGER 853
Score = 39.7 bits (91), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V I N T++++ + R G+L ++ + ++ ++ A I++ G DVF +T
Sbjct: 802 PQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFIT 861
Query: 83 DLNGNKLTDESVISYIEQSL 102
D + L+D + S +++++
Sbjct: 862 DADNQPLSDPQLCSRLQEAI 881
>sp|A5W852|GLND_PSEP1 [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain F1
/ ATCC 700007) GN=glnD PE=3 SV=1
Length = 900
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V I N T++++ + R G+L ++ + +L ++ A I++ G DVF +T
Sbjct: 802 PQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Query: 83 DLNGNKLTDESVISYIEQSL 102
D + L+D + S +++++
Sbjct: 862 DADNQPLSDPQLCSRLQEAI 881
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 81/198 (40%), Gaps = 30/198 (15%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMDVFHVTDLNGNKLTDES 93
T + + + +H V ++ LNL I A I+S +F +D + V D +G + D
Sbjct: 704 GTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNP 763
Query: 94 -----------------------VISYIEQSLETIHYGR-----SNSFNGLTALELTGTD 125
+ + + L+ + +++ +T LE+T D
Sbjct: 764 QRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPD 823
Query: 126 RVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLR 185
R GLL+ + + + S+ AK+ T R+ + ++ D ++ P+ D Q R++ +
Sbjct: 824 RPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADN-QPLSDPQLCSRLQEAIV 882
Query: 186 NVLKGDNDIRSAKMTVSM 203
L+ +++ V+
Sbjct: 883 QQLQAGQGSDTSQTRVTF 900
Score = 38.9 bits (89), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSP 170
F G T + + D+ + A ++ L ++ +A++ T + + Y V D + GS
Sbjct: 700 EFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSI 759
Query: 171 IEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
++ Q++ +I L L+ D T +RR+ + L+H
Sbjct: 760 GDNPQRVKQIRDGLTEALRNPEDY----------PTIIQRRVPRQ------------LKH 797
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ N A R +++ + DR LL + + + + +A I T GER
Sbjct: 798 FDFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGER 853
>sp|Q88MI2|GLND_PSEPK [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
KT2440) GN=glnD PE=3 SV=1
Length = 900
Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 23 PRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82
P+V I N T++++ + R G+L ++ + +L ++ A I++ G DVF +T
Sbjct: 802 PQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFIT 861
Query: 83 DLNGNKLTDESVISYIEQSL 102
D + L+D + S +++++
Sbjct: 862 DADNQPLSDPQLCSRLQEAI 881
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/198 (19%), Positives = 81/198 (40%), Gaps = 30/198 (15%)
Query: 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKA-YISSDGRFFMDVFHVTDLNGNKLTDES 93
T + + + +H V ++ LNL I A I+S +F +D + V D +G + D
Sbjct: 704 GTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGDNP 763
Query: 94 -----------------------VISYIEQSLETIHYGR-----SNSFNGLTALELTGTD 125
+ + + L+ + +++ +T LE+T D
Sbjct: 764 QRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILNDAQRPVTILEITAPD 823
Query: 126 RVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLR 185
R GLL+ + + + S+ AK+ T R+ + ++ D ++ P+ D Q R++ +
Sbjct: 824 RPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITDADN-QPLSDPQLCSRLQEAIV 882
Query: 186 NVLKGDNDIRSAKMTVSM 203
L+ +++ V+
Sbjct: 883 QQLQAGQGSDTSQTRVTF 900
Score = 38.9 bits (89), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 23/176 (13%)
Query: 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSP 170
F G T + + D+ + A ++ L ++ +A++ T + + Y V D + GS
Sbjct: 700 EFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSI 759
Query: 171 IEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRH 230
++ Q++ +I L L+ D T +RR+ + L+H
Sbjct: 760 GDNPQRVKQIRDGLTEALRNPEDY----------PTIIQRRVPRQ------------LKH 797
Query: 231 STDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286
P VT+ N A R +++ + DR LL + + + + +A I T GER
Sbjct: 798 FDFPPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGER 853
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,712,463
Number of Sequences: 539616
Number of extensions: 4068791
Number of successful extensions: 10003
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 9776
Number of HSP's gapped (non-prelim): 235
length of query: 311
length of database: 191,569,459
effective HSP length: 117
effective length of query: 194
effective length of database: 128,434,387
effective search space: 24916271078
effective search space used: 24916271078
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)