Query 021491
Match_columns 311
No_of_seqs 214 out of 1976
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:23:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 9.7E-31 2.1E-35 272.0 21.8 166 111-302 672-838 (854)
2 PRK05007 PII uridylyl-transfer 100.0 3.1E-30 6.8E-35 269.0 22.2 167 111-302 696-863 (884)
3 PRK01759 glnD PII uridylyl-tra 100.0 3.7E-28 8.1E-33 252.7 25.5 176 11-188 652-853 (854)
4 PRK05007 PII uridylyl-transfer 100.0 7.7E-28 1.7E-32 251.1 26.0 178 11-190 675-880 (884)
5 PRK00275 glnD PII uridylyl-tra 100.0 3E-27 6.4E-32 246.8 26.2 180 11-191 674-888 (895)
6 TIGR01693 UTase_glnD [Protein- 100.0 1.9E-27 4E-32 248.5 22.0 169 112-302 664-834 (850)
7 PRK04374 PII uridylyl-transfer 100.0 2E-26 4.2E-31 239.4 25.5 177 11-189 663-867 (869)
8 PRK00275 glnD PII uridylyl-tra 99.9 2.6E-26 5.5E-31 239.8 22.6 166 114-302 702-869 (895)
9 PRK04374 PII uridylyl-transfer 99.9 4.2E-26 9.1E-31 237.0 22.1 164 112-301 686-850 (869)
10 PRK03059 PII uridylyl-transfer 99.9 1E-25 2.2E-30 234.4 24.8 174 11-189 651-855 (856)
11 COG2844 GlnD UTP:GlnB (protein 99.9 1.5E-26 3.4E-31 230.2 17.7 165 112-301 680-845 (867)
12 PRK05092 PII uridylyl-transfer 99.9 1.9E-25 4.1E-30 235.0 22.9 171 111-303 727-899 (931)
13 PRK03381 PII uridylyl-transfer 99.9 2.4E-25 5.2E-30 229.7 23.0 161 21-185 586-773 (774)
14 PRK05092 PII uridylyl-transfer 99.9 8.1E-25 1.8E-29 230.2 26.3 180 11-191 704-917 (931)
15 PRK03381 PII uridylyl-transfer 99.9 2.2E-25 4.8E-30 229.9 21.6 166 114-302 597-762 (774)
16 TIGR01693 UTase_glnD [Protein- 99.9 7E-25 1.5E-29 229.2 25.2 176 11-188 641-849 (850)
17 COG2844 GlnD UTP:GlnB (protein 99.9 4.3E-25 9.3E-30 220.0 21.4 177 11-189 658-862 (867)
18 PRK03059 PII uridylyl-transfer 99.9 7.9E-25 1.7E-29 227.8 21.6 163 111-297 673-836 (856)
19 cd04897 ACT_ACR_3 ACT domain-c 99.8 2.8E-20 6E-25 136.7 8.0 57 247-303 1-57 (75)
20 cd04895 ACT_ACR_1 ACT domain-c 99.8 4.7E-20 1E-24 134.5 7.9 56 247-302 1-56 (72)
21 cd04897 ACT_ACR_3 ACT domain-c 99.8 2.5E-18 5.4E-23 126.3 11.2 74 116-190 1-74 (75)
22 cd04895 ACT_ACR_1 ACT domain-c 99.8 6.5E-18 1.4E-22 123.2 10.6 69 116-185 1-69 (72)
23 cd04896 ACT_ACR-like_3 ACT dom 99.8 1.8E-18 3.9E-23 127.0 7.6 53 248-301 1-55 (75)
24 cd04896 ACT_ACR-like_3 ACT dom 99.7 7.9E-17 1.7E-21 118.4 10.6 71 117-189 1-73 (75)
25 PRK11589 gcvR glycine cleavage 99.7 5.6E-16 1.2E-20 134.2 12.8 139 112-294 4-144 (190)
26 cd04925 ACT_ACR_2 ACT domain-c 99.7 1.1E-15 2.5E-20 112.7 11.0 72 117-189 1-73 (74)
27 PRK11589 gcvR glycine cleavage 99.6 5.5E-15 1.2E-19 128.0 13.3 148 32-194 5-171 (190)
28 cd04900 ACT_UUR-like_1 ACT dom 99.6 4E-15 8.7E-20 109.5 10.7 71 117-188 2-73 (73)
29 cd04900 ACT_UUR-like_1 ACT dom 99.6 1.2E-14 2.5E-19 107.0 10.5 69 35-103 1-70 (73)
30 cd04927 ACT_ACR-like_2 Second 99.6 1.4E-14 3.1E-19 107.4 11.1 71 118-190 2-73 (76)
31 cd04928 ACT_TyrKc Uncharacteri 99.6 1.2E-14 2.6E-19 104.7 9.9 65 36-102 2-67 (68)
32 cd04925 ACT_ACR_2 ACT domain-c 99.6 3.5E-14 7.6E-19 104.8 10.3 68 36-103 1-69 (74)
33 cd04927 ACT_ACR-like_2 Second 99.5 1.3E-13 2.8E-18 102.3 10.7 65 37-102 2-67 (76)
34 COG2716 GcvR Glycine cleavage 99.5 5.2E-13 1.1E-17 111.3 10.4 151 32-193 2-167 (176)
35 COG2716 GcvR Glycine cleavage 99.5 2.7E-13 6E-18 113.0 8.7 128 113-284 2-129 (176)
36 PRK00227 glnD PII uridylyl-tra 99.4 4.4E-12 9.6E-17 129.0 14.1 128 117-295 547-675 (693)
37 PRK00227 glnD PII uridylyl-tra 99.4 6.3E-12 1.4E-16 127.9 14.4 141 36-190 547-692 (693)
38 cd04926 ACT_ACR_4 C-terminal 99.4 6.2E-12 1.3E-16 92.2 10.4 67 36-103 2-68 (72)
39 cd04926 ACT_ACR_4 C-terminal 99.3 1.1E-11 2.4E-16 90.9 10.5 67 117-185 2-68 (72)
40 cd04928 ACT_TyrKc Uncharacteri 99.3 1.3E-11 2.8E-16 89.0 9.7 65 117-188 2-67 (68)
41 cd04899 ACT_ACR-UUR-like_2 C-t 99.3 5.1E-11 1.1E-15 86.3 10.5 69 117-187 1-69 (70)
42 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 2.8E-10 6.1E-15 82.4 10.3 68 36-104 1-68 (70)
43 cd04873 ACT_UUR-ACR-like ACT d 99.0 1E-08 2.2E-13 73.8 10.5 69 117-187 1-69 (70)
44 cd04873 ACT_UUR-ACR-like ACT d 98.9 3.3E-08 7.1E-13 71.1 10.2 67 37-104 2-68 (70)
45 PF13740 ACT_6: ACT domain; PD 98.9 2.5E-08 5.5E-13 73.7 9.7 64 116-187 2-65 (76)
46 PF13740 ACT_6: ACT domain; PD 98.7 3.4E-07 7.3E-12 67.7 10.1 63 35-104 2-64 (76)
47 COG4747 ACT domain-containing 98.6 4.3E-07 9.3E-12 71.4 10.5 114 36-164 4-118 (142)
48 cd04893 ACT_GcvR_1 ACT domains 98.6 2.3E-07 5E-12 68.8 8.5 69 117-194 2-70 (77)
49 cd04894 ACT_ACR-like_1 ACT dom 98.6 2.3E-07 5.1E-12 64.4 6.8 65 36-100 1-66 (69)
50 cd04870 ACT_PSP_1 CT domains f 98.6 2.9E-07 6.3E-12 67.8 7.7 63 118-187 1-63 (75)
51 cd04893 ACT_GcvR_1 ACT domains 98.5 6.1E-07 1.3E-11 66.5 8.9 48 36-83 2-49 (77)
52 PF01842 ACT: ACT domain; Int 98.5 1.3E-06 2.8E-11 61.8 9.6 61 117-186 1-63 (66)
53 PF01842 ACT: ACT domain; Int 98.5 1.1E-06 2.3E-11 62.3 8.7 47 36-82 1-49 (66)
54 cd04870 ACT_PSP_1 CT domains f 98.4 1.6E-06 3.5E-11 63.8 8.1 62 37-100 1-62 (75)
55 cd04872 ACT_1ZPV ACT domain pr 98.3 3.5E-06 7.6E-11 63.9 7.5 65 117-187 2-66 (88)
56 PRK00194 hypothetical protein; 98.2 6.1E-06 1.3E-10 62.8 7.2 70 116-192 3-72 (90)
57 cd04875 ACT_F4HF-DF N-terminal 98.2 1.1E-05 2.4E-10 59.0 8.0 63 118-186 1-65 (74)
58 cd04869 ACT_GcvR_2 ACT domains 98.2 1.4E-05 3.1E-10 59.2 8.6 62 118-186 1-68 (81)
59 PRK00194 hypothetical protein; 98.1 1.2E-05 2.5E-10 61.2 7.8 65 35-100 3-67 (90)
60 cd04872 ACT_1ZPV ACT domain pr 98.1 1E-05 2.3E-10 61.3 7.3 64 36-100 2-65 (88)
61 cd04869 ACT_GcvR_2 ACT domains 98.1 2.1E-05 4.6E-10 58.3 8.7 62 37-100 1-68 (81)
62 cd04875 ACT_F4HF-DF N-terminal 98.1 2.8E-05 6E-10 56.9 8.8 63 37-100 1-65 (74)
63 TIGR00655 PurU formyltetrahydr 97.8 0.00074 1.6E-08 62.3 14.9 110 37-149 2-117 (280)
64 PF13291 ACT_4: ACT domain; PD 97.8 0.00025 5.4E-09 52.5 9.6 64 115-185 5-70 (80)
65 PRK06027 purU formyltetrahydro 97.8 0.0001 2.2E-09 68.3 9.0 73 114-193 4-78 (286)
66 PRK13010 purU formyltetrahydro 97.8 0.00055 1.2E-08 63.4 13.8 66 35-100 9-76 (289)
67 COG4747 ACT domain-containing 97.8 0.0012 2.6E-08 52.2 13.3 113 118-295 5-118 (142)
68 COG3830 ACT domain-containing 97.7 5.3E-05 1.2E-09 57.1 4.8 67 116-188 3-69 (90)
69 cd04894 ACT_ACR-like_1 ACT dom 97.7 0.00016 3.4E-09 50.5 6.5 67 117-187 1-67 (69)
70 PF13291 ACT_4: ACT domain; PD 97.7 0.00023 5E-09 52.7 8.0 50 247-296 6-57 (80)
71 cd04887 ACT_MalLac-Enz ACT_Mal 97.6 0.00058 1.3E-08 49.5 9.1 61 119-186 2-63 (74)
72 TIGR00655 PurU formyltetrahydr 97.6 0.00029 6.2E-09 65.0 8.9 69 118-192 2-72 (280)
73 PRK13010 purU formyltetrahydro 97.6 0.00033 7.1E-09 64.9 8.8 67 115-186 8-76 (289)
74 PRK13011 formyltetrahydrofolat 97.5 0.00057 1.2E-08 63.2 9.6 65 115-186 6-72 (286)
75 PRK06027 purU formyltetrahydro 97.5 0.0034 7.4E-08 58.1 14.7 49 34-82 5-55 (286)
76 COG3830 ACT domain-containing 97.5 0.00013 2.8E-09 55.0 4.0 67 35-102 3-69 (90)
77 PRK13011 formyltetrahydrofolat 97.5 0.0043 9.4E-08 57.4 14.7 64 35-100 7-72 (286)
78 COG0788 PurU Formyltetrahydrof 97.5 0.00066 1.4E-08 61.1 8.8 66 34-100 6-73 (287)
79 cd04887 ACT_MalLac-Enz ACT_Mal 97.4 0.0017 3.6E-08 47.0 8.8 46 38-83 2-48 (74)
80 cd04886 ACT_ThrD-II-like C-ter 97.4 0.0023 4.9E-08 45.4 9.1 61 119-186 1-66 (73)
81 cd04877 ACT_TyrR N-terminal AC 97.4 0.0014 3.1E-08 47.8 8.1 35 118-152 2-36 (74)
82 cd04908 ACT_Bt0572_1 N-termina 97.3 0.0021 4.5E-08 45.8 8.0 46 117-164 2-47 (66)
83 cd04909 ACT_PDH-BS C-terminal 97.3 0.0029 6.4E-08 45.1 8.7 61 117-186 2-64 (69)
84 cd04889 ACT_PDH-BS-like C-term 97.2 0.0011 2.4E-08 45.4 6.2 46 119-164 1-47 (56)
85 COG0788 PurU Formyltetrahydrof 97.2 0.00084 1.8E-08 60.4 6.5 66 115-186 6-73 (287)
86 CHL00100 ilvH acetohydroxyacid 97.2 0.0029 6.3E-08 54.2 9.4 64 117-188 3-68 (174)
87 cd04889 ACT_PDH-BS-like C-term 97.2 0.0011 2.3E-08 45.5 5.5 46 250-295 1-47 (56)
88 PRK06737 acetolactate synthase 97.2 0.0036 7.8E-08 46.2 8.4 62 117-186 3-66 (76)
89 cd04888 ACT_PheB-BS C-terminal 97.1 0.0046 9.9E-08 44.8 8.8 62 118-186 2-65 (76)
90 PRK13562 acetolactate synthase 97.1 0.0035 7.5E-08 47.0 8.0 63 117-186 3-67 (84)
91 cd04908 ACT_Bt0572_1 N-termina 97.1 0.0022 4.9E-08 45.6 6.4 45 249-295 3-47 (66)
92 PRK08178 acetolactate synthase 97.1 0.0044 9.5E-08 47.6 8.2 64 115-186 7-71 (96)
93 cd04877 ACT_TyrR N-terminal AC 97.0 0.0018 3.9E-08 47.2 5.8 35 249-283 2-36 (74)
94 PRK07431 aspartate kinase; Pro 97.0 0.16 3.5E-06 51.7 21.9 183 33-279 346-554 (587)
95 TIGR00119 acolac_sm acetolacta 97.0 0.0059 1.3E-07 51.5 9.4 64 117-188 2-67 (157)
96 cd04886 ACT_ThrD-II-like C-ter 97.0 0.0033 7.1E-08 44.6 7.0 45 38-82 1-50 (73)
97 cd04879 ACT_3PGDH-like ACT_3PG 96.9 0.0061 1.3E-07 42.8 7.9 58 38-100 2-61 (71)
98 cd04879 ACT_3PGDH-like ACT_3PG 96.9 0.0024 5.2E-08 45.0 5.6 44 250-293 2-47 (71)
99 PRK11895 ilvH acetolactate syn 96.9 0.0087 1.9E-07 50.6 9.6 64 117-188 3-68 (161)
100 cd04878 ACT_AHAS N-terminal AC 96.9 0.0053 1.2E-07 43.3 6.9 35 249-283 2-36 (72)
101 PRK11152 ilvM acetolactate syn 96.8 0.007 1.5E-07 44.6 7.5 61 117-186 4-66 (76)
102 PRK07431 aspartate kinase; Pro 96.8 0.097 2.1E-06 53.3 18.2 191 42-281 278-474 (587)
103 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.8 0.012 2.6E-07 42.3 8.6 45 118-162 2-48 (79)
104 cd04874 ACT_Af1403 N-terminal 96.8 0.011 2.4E-07 41.8 8.3 46 118-163 2-48 (72)
105 cd04878 ACT_AHAS N-terminal AC 96.8 0.016 3.4E-07 40.8 9.0 46 118-163 2-49 (72)
106 cd04909 ACT_PDH-BS C-terminal 96.7 0.0058 1.2E-07 43.6 6.2 46 249-294 3-50 (69)
107 cd04888 ACT_PheB-BS C-terminal 96.7 0.0082 1.8E-07 43.5 7.1 47 37-83 2-49 (76)
108 cd04874 ACT_Af1403 N-terminal 96.7 0.014 3E-07 41.3 8.1 46 37-82 2-48 (72)
109 PRK13562 acetolactate synthase 96.7 0.012 2.6E-07 44.1 7.7 45 37-81 4-50 (84)
110 cd04903 ACT_LSD C-terminal ACT 96.7 0.015 3.3E-07 40.9 8.2 58 38-100 2-61 (71)
111 PRK11895 ilvH acetolactate syn 96.6 0.24 5.2E-06 41.9 16.4 103 36-147 3-115 (161)
112 cd04905 ACT_CM-PDT C-terminal 96.6 0.0075 1.6E-07 44.6 6.6 49 248-296 2-51 (80)
113 PRK08178 acetolactate synthase 96.6 0.0098 2.1E-07 45.7 7.2 37 33-69 6-42 (96)
114 PRK06737 acetolactate synthase 96.6 0.0098 2.1E-07 43.8 6.7 46 36-81 3-50 (76)
115 cd04901 ACT_3PGDH C-terminal A 96.6 0.0029 6.3E-08 45.0 3.8 57 38-99 2-58 (69)
116 cd04882 ACT_Bt0572_2 C-termina 96.5 0.01 2.3E-07 41.4 6.4 44 38-81 2-47 (65)
117 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.5 0.0082 1.8E-07 43.2 5.9 35 249-283 2-36 (79)
118 cd04903 ACT_LSD C-terminal ACT 96.5 0.0088 1.9E-07 42.1 5.9 42 250-291 2-45 (71)
119 PRK08577 hypothetical protein; 96.4 0.037 8E-07 45.4 10.0 70 111-186 51-122 (136)
120 cd04901 ACT_3PGDH C-terminal A 96.4 0.0047 1E-07 43.9 4.1 45 119-163 2-46 (69)
121 cd04876 ACT_RelA-SpoT ACT dom 96.4 0.044 9.5E-07 37.5 8.9 46 119-164 1-47 (71)
122 cd04902 ACT_3PGDH-xct C-termin 96.3 0.02 4.3E-07 41.0 7.0 46 38-83 2-49 (73)
123 cd04882 ACT_Bt0572_2 C-termina 96.3 0.01 2.2E-07 41.4 5.4 36 118-153 1-36 (65)
124 cd04883 ACT_AcuB C-terminal AC 96.3 0.045 9.7E-07 39.1 8.8 47 36-82 2-50 (72)
125 PRK08577 hypothetical protein; 96.3 0.064 1.4E-06 44.0 10.7 49 34-82 55-105 (136)
126 PRK11152 ilvM acetolactate syn 96.3 0.022 4.7E-07 42.0 7.0 46 248-293 4-51 (76)
127 CHL00100 ilvH acetohydroxyacid 96.3 0.016 3.4E-07 49.7 7.2 107 36-148 3-116 (174)
128 cd04905 ACT_CM-PDT C-terminal 96.3 0.064 1.4E-06 39.5 9.7 48 117-164 2-50 (80)
129 TIGR00119 acolac_sm acetolacta 96.3 0.018 3.8E-07 48.6 7.4 102 37-147 3-114 (157)
130 cd04898 ACT_ACR-like_4 ACT dom 96.3 0.0031 6.6E-08 45.8 2.3 47 249-295 2-50 (77)
131 cd02116 ACT ACT domains are co 96.2 0.016 3.5E-07 37.7 5.7 35 250-284 1-35 (60)
132 cd04902 ACT_3PGDH-xct C-termin 96.2 0.014 3.1E-07 41.7 5.6 45 119-163 2-48 (73)
133 cd04884 ACT_CBS C-terminal ACT 96.2 0.045 9.8E-07 39.4 8.1 34 119-152 2-35 (72)
134 PRK04435 hypothetical protein; 96.1 0.065 1.4E-06 44.6 10.0 69 112-186 65-134 (147)
135 PRK04435 hypothetical protein; 96.1 0.039 8.5E-07 46.0 8.5 58 26-83 60-118 (147)
136 TIGR00656 asp_kin_monofn aspar 96.0 0.26 5.7E-06 47.7 15.0 105 35-146 260-370 (401)
137 PRK06635 aspartate kinase; Rev 96.0 0.18 3.9E-06 48.8 13.9 100 42-147 270-374 (404)
138 cd04876 ACT_RelA-SpoT ACT dom 96.0 0.033 7.1E-07 38.1 6.5 44 250-293 1-45 (71)
139 PF13710 ACT_5: ACT domain; PD 95.9 0.033 7.1E-07 39.5 6.3 54 125-186 1-56 (63)
140 cd02116 ACT ACT domains are co 95.9 0.052 1.1E-06 35.1 7.0 34 38-71 1-34 (60)
141 PRK07334 threonine dehydratase 95.9 0.18 3.9E-06 48.9 13.4 64 116-186 326-394 (403)
142 cd04884 ACT_CBS C-terminal ACT 95.8 0.023 5E-07 40.9 5.4 34 250-283 2-35 (72)
143 cd04883 ACT_AcuB C-terminal AC 95.8 0.037 8.1E-07 39.5 6.2 47 248-294 2-50 (72)
144 cd04871 ACT_PSP_2 ACT domains 95.5 0.012 2.5E-07 44.3 2.8 67 118-193 1-77 (84)
145 PRK08210 aspartate kinase I; R 95.5 0.85 1.8E-05 44.2 16.5 98 35-146 271-372 (403)
146 PRK06635 aspartate kinase; Rev 95.5 0.35 7.5E-06 46.9 13.7 106 119-279 265-375 (404)
147 PRK06291 aspartate kinase; Pro 95.4 0.78 1.7E-05 45.4 15.9 110 35-151 321-436 (465)
148 cd04931 ACT_PAH ACT domain of 95.2 0.074 1.6E-06 40.5 6.4 52 245-296 12-64 (90)
149 cd04880 ACT_AAAH-PDT-like ACT 95.0 0.09 2E-06 38.1 6.3 46 251-296 3-49 (75)
150 PF13710 ACT_5: ACT domain; PD 94.8 0.086 1.9E-06 37.3 5.4 39 44-82 1-41 (63)
151 cd04880 ACT_AAAH-PDT-like ACT 94.8 0.41 8.8E-06 34.6 9.2 45 120-164 3-48 (75)
152 cd04885 ACT_ThrD-I Tandem C-te 94.7 0.25 5.3E-06 35.2 7.7 60 119-186 1-61 (68)
153 cd04929 ACT_TPH ACT domain of 94.7 0.03 6.5E-07 41.0 2.9 47 250-296 3-50 (74)
154 PRK10872 relA (p)ppGpp synthet 94.6 0.14 3E-06 53.4 8.4 58 237-294 655-715 (743)
155 cd04898 ACT_ACR-like_4 ACT dom 94.5 0.097 2.1E-06 38.1 5.0 70 119-188 3-74 (77)
156 PRK09034 aspartate kinase; Rev 94.4 1.3 2.8E-05 43.8 14.5 107 36-151 309-423 (454)
157 PRK10872 relA (p)ppGpp synthet 94.4 0.24 5.3E-06 51.6 9.7 65 115-186 665-731 (743)
158 cd04904 ACT_AAAH ACT domain of 94.3 0.038 8.1E-07 40.3 2.7 47 250-296 3-50 (74)
159 PRK07334 threonine dehydratase 94.3 0.18 3.8E-06 49.0 8.1 37 247-283 326-362 (403)
160 PF13840 ACT_7: ACT domain ; P 94.2 0.067 1.5E-06 38.0 3.8 47 246-297 5-55 (65)
161 TIGR00656 asp_kin_monofn aspar 94.0 1.7 3.7E-05 42.0 14.4 107 115-278 259-371 (401)
162 cd04871 ACT_PSP_2 ACT domains 93.7 0.064 1.4E-06 40.2 2.9 61 37-100 1-71 (84)
163 TIGR00719 sda_beta L-serine de 93.7 0.29 6.3E-06 43.2 7.5 53 111-163 143-197 (208)
164 PLN02551 aspartokinase 93.6 4.8 0.0001 40.5 17.0 136 35-188 366-507 (521)
165 PRK11092 bifunctional (p)ppGpp 93.6 0.27 5.8E-06 51.1 8.3 55 237-291 615-671 (702)
166 cd04931 ACT_PAH ACT domain of 93.6 1.4 3E-05 33.5 10.1 49 116-164 14-63 (90)
167 PRK11092 bifunctional (p)ppGpp 93.6 0.42 9E-06 49.7 9.6 64 115-185 625-689 (702)
168 COG1707 ACT domain-containing 93.5 0.27 5.8E-06 41.5 6.5 46 118-163 4-51 (218)
169 COG1707 ACT domain-containing 93.4 0.29 6.3E-06 41.3 6.5 45 37-81 4-50 (218)
170 TIGR00691 spoT_relA (p)ppGpp s 93.4 0.34 7.3E-06 50.3 8.5 48 237-284 599-647 (683)
171 PRK09436 thrA bifunctional asp 93.3 2.8 6.1E-05 44.6 15.4 111 34-151 314-434 (819)
172 COG0317 SpoT Guanosine polypho 93.3 0.25 5.4E-06 50.9 7.2 55 237-291 616-671 (701)
173 cd04930 ACT_TH ACT domain of t 93.3 0.22 4.7E-06 39.7 5.5 49 247-295 41-90 (115)
174 PF13840 ACT_7: ACT domain ; P 93.1 0.43 9.3E-06 33.8 6.3 46 114-164 4-53 (65)
175 cd04885 ACT_ThrD-I Tandem C-te 93.0 0.66 1.4E-05 32.9 7.2 32 38-70 1-32 (68)
176 TIGR00691 spoT_relA (p)ppGpp s 92.9 0.69 1.5E-05 48.1 10.0 64 115-185 609-673 (683)
177 TIGR00657 asp_kinases aspartat 92.8 5 0.00011 39.4 15.5 107 35-148 302-413 (441)
178 PRK09181 aspartate kinase; Val 92.7 5.6 0.00012 39.6 15.7 106 34-150 328-438 (475)
179 PRK06291 aspartate kinase; Pro 92.6 4.7 0.0001 39.9 15.1 112 115-283 320-437 (465)
180 PRK11899 prephenate dehydratas 92.5 0.4 8.7E-06 44.2 7.0 49 247-295 194-243 (279)
181 PRK06382 threonine dehydratase 92.3 2.7 5.9E-05 40.8 12.8 65 115-186 329-398 (406)
182 cd04904 ACT_AAAH ACT domain of 92.2 1.5 3.3E-05 31.7 8.4 46 119-164 3-49 (74)
183 cd04929 ACT_TPH ACT domain of 92.2 1.6 3.6E-05 31.8 8.5 46 119-164 3-49 (74)
184 COG0317 SpoT Guanosine polypho 91.9 0.76 1.6E-05 47.5 8.7 66 113-185 624-690 (701)
185 cd04906 ACT_ThrD-I_1 First of 91.8 1.7 3.6E-05 32.4 8.5 61 118-186 3-64 (85)
186 PRK11790 D-3-phosphoglycerate 91.8 0.39 8.4E-06 46.8 6.2 49 115-163 337-385 (409)
187 PRK12483 threonine dehydratase 91.6 9.9 0.00022 38.3 16.1 138 34-186 344-502 (521)
188 PRK08210 aspartate kinase I; R 91.5 3.8 8.2E-05 39.7 12.8 98 116-277 271-372 (403)
189 COG0077 PheA Prephenate dehydr 91.4 0.55 1.2E-05 43.2 6.4 55 246-300 193-247 (279)
190 PRK08818 prephenate dehydrogen 91.4 0.41 9E-06 46.0 5.8 51 246-297 294-345 (370)
191 COG0527 LysC Aspartokinases [A 91.3 16 0.00035 36.1 18.2 107 34-148 306-418 (447)
192 TIGR00719 sda_beta L-serine de 91.2 1.1 2.4E-05 39.4 8.0 48 34-81 147-196 (208)
193 PRK09436 thrA bifunctional asp 90.5 6.5 0.00014 41.9 14.2 116 114-282 313-434 (819)
194 KOG2663 Acetolactate synthase, 90.4 0.79 1.7E-05 41.2 6.2 38 115-152 76-113 (309)
195 PRK09084 aspartate kinase III; 90.4 13 0.00028 36.7 15.5 103 34-142 305-413 (448)
196 PRK09224 threonine dehydratase 90.3 9.8 0.00021 38.2 14.7 109 34-150 327-456 (504)
197 PRK09034 aspartate kinase; Rev 90.1 9.3 0.0002 37.7 14.2 37 246-282 384-423 (454)
198 COG0440 IlvH Acetolactate synt 89.9 1.1 2.5E-05 37.7 6.5 66 116-188 4-70 (163)
199 PRK06545 prephenate dehydrogen 89.9 1.4 3E-05 42.1 7.9 52 113-164 287-338 (359)
200 TIGR01127 ilvA_1Cterm threonin 89.6 8.6 0.00019 36.9 13.3 65 115-186 304-373 (380)
201 PRK11790 D-3-phosphoglycerate 89.5 0.65 1.4E-05 45.2 5.5 62 34-100 337-398 (409)
202 PRK08198 threonine dehydratase 89.0 4 8.7E-05 39.5 10.6 67 113-186 324-395 (404)
203 KOG2663 Acetolactate synthase, 88.8 0.62 1.3E-05 41.9 4.3 44 34-77 76-119 (309)
204 PRK11899 prephenate dehydratas 88.7 3.2 6.9E-05 38.3 9.2 64 116-186 194-258 (279)
205 PRK06382 threonine dehydratase 88.7 3.5 7.5E-05 40.1 9.9 51 33-83 328-383 (406)
206 PRK06349 homoserine dehydrogen 88.4 1.2 2.6E-05 43.6 6.5 51 246-296 347-397 (426)
207 cd04930 ACT_TH ACT domain of t 88.2 3.4 7.4E-05 32.9 7.8 49 116-164 41-90 (115)
208 TIGR00657 asp_kinases aspartat 87.9 20 0.00043 35.2 14.7 34 246-279 377-413 (441)
209 COG0077 PheA Prephenate dehydr 87.9 3.5 7.5E-05 38.0 8.7 65 115-186 193-258 (279)
210 cd04906 ACT_ThrD-I_1 First of 87.5 5.7 0.00012 29.4 8.4 31 37-69 3-33 (85)
211 PRK06545 prephenate dehydrogen 87.4 0.94 2E-05 43.2 5.0 40 245-284 288-327 (359)
212 cd04913 ACT_AKii-LysC-BS-like_ 87.4 5.9 0.00013 27.6 8.2 32 119-150 4-36 (75)
213 PRK10622 pheA bifunctional cho 87.0 1.8 3.8E-05 41.9 6.6 50 247-296 297-347 (386)
214 PRK06349 homoserine dehydrogen 86.4 3.8 8.2E-05 40.1 8.7 51 114-164 346-396 (426)
215 PRK09466 metL bifunctional asp 86.4 46 0.001 35.5 17.2 103 35-147 317-425 (810)
216 PRK13581 D-3-phosphoglycerate 86.3 2.1 4.6E-05 43.1 7.1 50 113-162 449-500 (526)
217 PRK08961 bifunctional aspartat 86.0 28 0.00061 37.3 15.7 102 35-144 322-429 (861)
218 PF05088 Bac_GDH: Bacterial NA 85.9 71 0.0015 36.6 21.1 168 24-192 330-569 (1528)
219 COG0440 IlvH Acetolactate synt 85.7 2.6 5.5E-05 35.6 6.1 37 36-72 5-42 (163)
220 cd04922 ACT_AKi-HSDH-ThrA_2 AC 85.6 9.2 0.0002 26.1 8.8 35 117-151 2-39 (66)
221 PRK08818 prephenate dehydrogen 85.3 2.2 4.8E-05 41.0 6.4 49 115-164 294-343 (370)
222 PLN02551 aspartokinase 84.1 26 0.00057 35.3 13.6 113 115-282 365-482 (521)
223 PRK08526 threonine dehydratase 84.1 23 0.0005 34.4 12.9 83 89-186 307-394 (403)
224 PRK08198 threonine dehydratase 83.6 10 0.00022 36.7 10.2 36 34-69 326-361 (404)
225 cd04937 ACT_AKi-DapG-BS_2 ACT 82.9 13 0.00028 25.7 8.4 29 117-145 2-33 (64)
226 TIGR01327 PGDH D-3-phosphoglyc 82.6 3 6.5E-05 42.0 6.2 50 114-163 449-500 (525)
227 cd04891 ACT_AK-LysC-DapG-like_ 82.1 12 0.00026 24.7 7.7 42 123-164 8-50 (61)
228 COG2150 Predicted regulator of 81.7 3 6.5E-05 35.0 4.9 35 34-68 94-128 (167)
229 PRK10622 pheA bifunctional cho 81.4 10 0.00022 36.7 9.2 49 116-164 297-346 (386)
230 PRK10820 DNA-binding transcrip 81.3 1.5 3.2E-05 44.1 3.6 36 249-284 2-37 (520)
231 TIGR01270 Trp_5_monoox tryptop 80.8 3.1 6.7E-05 41.0 5.4 54 243-296 27-82 (464)
232 TIGR01127 ilvA_1Cterm threonin 80.8 15 0.00032 35.2 10.2 47 36-82 306-357 (380)
233 PRK09181 aspartate kinase; Val 80.8 44 0.00095 33.3 13.6 106 115-281 328-438 (475)
234 cd04919 ACT_AK-Hom3_2 ACT doma 80.6 16 0.00034 25.1 8.8 35 117-151 2-39 (66)
235 COG0527 LysC Aspartokinases [A 80.5 62 0.0013 32.0 14.4 108 114-279 305-418 (447)
236 cd04913 ACT_AKii-LysC-BS-like_ 80.2 3.1 6.6E-05 29.1 4.0 28 254-281 9-36 (75)
237 COG3978 Acetolactate synthase 80.1 11 0.00025 27.8 6.8 63 116-187 3-67 (86)
238 cd04922 ACT_AKi-HSDH-ThrA_2 AC 79.7 5.1 0.00011 27.5 5.0 46 249-296 3-51 (66)
239 cd04891 ACT_AK-LysC-DapG-like_ 79.7 4.3 9.2E-05 26.9 4.5 42 254-295 8-50 (61)
240 TIGR02079 THD1 threonine dehyd 79.3 47 0.001 32.3 13.1 65 115-186 324-390 (409)
241 cd04919 ACT_AK-Hom3_2 ACT doma 79.2 5.7 0.00012 27.4 5.1 35 248-282 2-39 (66)
242 cd04868 ACT_AK-like ACT domain 79.1 3.6 7.7E-05 27.0 3.9 32 250-281 3-37 (60)
243 COG2150 Predicted regulator of 79.1 4 8.8E-05 34.3 4.8 36 115-150 92-129 (167)
244 cd04912 ACT_AKiii-LysC-EC-like 78.3 21 0.00046 25.6 8.0 63 117-186 2-67 (75)
245 PRK13581 D-3-phosphoglycerate 78.2 7.5 0.00016 39.2 7.4 62 34-100 451-514 (526)
246 cd04924 ACT_AK-Arch_2 ACT doma 78.2 19 0.0004 24.5 8.9 46 117-164 2-50 (66)
247 PLN02550 threonine dehydratase 77.8 79 0.0017 32.5 14.5 135 35-186 417-572 (591)
248 PRK09084 aspartate kinase III; 77.8 55 0.0012 32.3 13.2 47 114-164 304-353 (448)
249 COG4492 PheB ACT domain-contai 76.1 21 0.00045 29.2 7.9 51 114-164 70-121 (150)
250 cd04932 ACT_AKiii-LysC-EC_1 AC 74.3 5.7 0.00012 28.9 4.0 39 254-296 11-49 (75)
251 PLN02317 arogenate dehydratase 74.0 8.3 0.00018 37.2 6.1 40 247-286 283-322 (382)
252 PF05088 Bac_GDH: Bacterial NA 74.0 38 0.00082 38.6 11.9 90 15-104 464-563 (1528)
253 PTZ00324 glutamate dehydrogena 73.9 33 0.00071 37.2 10.9 67 21-87 215-286 (1002)
254 COG3978 Acetolactate synthase 73.7 16 0.00034 27.1 6.1 47 247-293 3-51 (86)
255 TIGR01327 PGDH D-3-phosphoglyc 73.6 8.6 0.00019 38.8 6.4 61 35-100 451-513 (525)
256 cd04924 ACT_AK-Arch_2 ACT doma 73.4 10 0.00022 25.9 5.0 47 249-297 3-52 (66)
257 cd04937 ACT_AKi-DapG-BS_2 ACT 73.2 6.6 0.00014 27.2 4.0 28 249-276 3-33 (64)
258 PRK11898 prephenate dehydratas 72.5 10 0.00022 35.1 6.1 49 247-295 196-246 (283)
259 COG4492 PheB ACT domain-contai 72.4 18 0.00038 29.6 6.6 48 35-82 72-120 (150)
260 cd04868 ACT_AK-like ACT domain 72.4 8 0.00017 25.2 4.2 33 118-150 2-37 (60)
261 PRK08639 threonine dehydratase 71.8 90 0.002 30.4 13.0 65 115-186 335-401 (420)
262 cd04932 ACT_AKiii-LysC-EC_1 AC 71.4 36 0.00078 24.6 8.3 43 37-83 3-48 (75)
263 cd04916 ACT_AKiii-YclM-BS_2 AC 71.0 30 0.00064 23.5 8.8 34 118-151 3-39 (66)
264 cd07247 SgaA_N_like N-terminal 70.1 26 0.00057 26.4 7.3 54 246-305 61-114 (114)
265 cd04916 ACT_AKiii-YclM-BS_2 AC 69.6 14 0.00029 25.2 5.0 34 249-282 3-39 (66)
266 PLN02317 arogenate dehydratase 69.4 38 0.00082 32.8 9.4 49 116-164 283-346 (382)
267 PRK08841 aspartate kinase; Val 68.7 1.2E+02 0.0025 29.5 15.0 112 47-189 266-377 (392)
268 cd04912 ACT_AKiii-LysC-EC-like 68.7 40 0.00087 24.1 7.5 30 37-66 3-35 (75)
269 TIGR01268 Phe4hydrox_tetr phen 68.5 13 0.00027 36.6 6.0 50 247-296 16-66 (436)
270 cd04892 ACT_AK-like_2 ACT doma 68.0 9.5 0.00021 25.4 3.9 32 249-280 2-36 (65)
271 cd04890 ACT_AK-like_1 ACT doma 67.5 20 0.00043 24.4 5.4 40 254-297 10-49 (62)
272 cd04935 ACT_AKiii-DAPDC_1 ACT 67.2 45 0.00097 24.1 7.6 56 124-186 12-67 (75)
273 cd04892 ACT_AK-like_2 ACT doma 66.7 34 0.00074 22.5 8.4 32 118-149 2-36 (65)
274 cd04918 ACT_AK1-AT_2 ACT domai 66.3 41 0.00088 23.3 8.6 35 118-152 3-39 (65)
275 TIGR01124 ilvA_2Cterm threonin 66.0 1.3E+02 0.0027 30.3 12.8 64 115-186 324-387 (499)
276 PRK10820 DNA-binding transcrip 65.5 11 0.00024 37.9 5.3 35 118-152 2-36 (520)
277 cd04935 ACT_AKiii-DAPDC_1 ACT 65.4 12 0.00026 27.1 4.1 39 254-296 11-49 (75)
278 cd04918 ACT_AK1-AT_2 ACT domai 64.9 33 0.00072 23.7 6.2 44 37-82 3-48 (65)
279 cd07261 Glo_EDI_BRP_like_11 Th 64.8 24 0.00052 26.7 6.0 56 246-305 59-114 (114)
280 PRK14646 hypothetical protein; 64.8 83 0.0018 26.3 10.1 92 47-144 8-103 (155)
281 PRK11898 prephenate dehydratas 64.4 57 0.0012 30.1 9.4 49 116-164 196-246 (283)
282 PRK14634 hypothetical protein; 63.8 72 0.0016 26.7 9.0 92 45-142 6-101 (155)
283 PRK09224 threonine dehydratase 63.6 1.7E+02 0.0036 29.4 18.2 127 115-281 327-456 (504)
284 cd04921 ACT_AKi-HSDH-ThrA-like 63.4 22 0.00047 25.5 5.3 36 249-284 3-41 (80)
285 PRK14630 hypothetical protein; 63.0 58 0.0013 26.9 8.2 90 44-141 6-97 (143)
286 PRK09466 metL bifunctional asp 62.9 1.7E+02 0.0037 31.3 13.6 104 115-278 316-425 (810)
287 PRK14636 hypothetical protein; 62.8 85 0.0018 26.9 9.5 94 45-143 4-100 (176)
288 PRK08526 threonine dehydratase 62.3 72 0.0016 31.0 10.1 38 33-70 324-361 (403)
289 cd04936 ACT_AKii-LysC-BS-like_ 61.9 44 0.00095 22.2 8.2 31 118-148 2-35 (63)
290 TIGR01270 Trp_5_monoox tryptop 61.8 33 0.00072 33.9 7.5 52 113-164 28-81 (464)
291 PRK12483 threonine dehydratase 61.2 1.9E+02 0.0041 29.2 18.2 126 115-280 344-474 (521)
292 PRK14645 hypothetical protein; 60.5 1E+02 0.0022 25.8 9.9 94 44-143 7-104 (154)
293 PRK14640 hypothetical protein; 59.6 96 0.0021 25.8 9.1 92 47-144 7-100 (152)
294 cd04914 ACT_AKi-DapG-BS_1 ACT 59.3 18 0.00038 25.5 4.0 30 118-147 3-33 (67)
295 cd04920 ACT_AKiii-DAPDC_2 ACT 59.2 56 0.0012 22.5 7.7 27 118-144 2-31 (63)
296 TIGR01268 Phe4hydrox_tetr phen 59.0 73 0.0016 31.4 9.3 49 116-164 16-65 (436)
297 PRK14647 hypothetical protein; 58.9 1E+02 0.0022 25.8 9.2 91 48-144 10-102 (159)
298 cd04923 ACT_AK-LysC-DapG-like_ 58.9 17 0.00037 24.3 3.8 30 250-279 3-35 (63)
299 PRK14637 hypothetical protein; 58.5 1E+02 0.0022 25.7 9.0 93 43-142 5-99 (151)
300 cd04936 ACT_AKii-LysC-BS-like_ 58.4 19 0.00041 24.1 4.0 44 250-297 3-49 (63)
301 TIGR01124 ilvA_2Cterm threonin 57.9 2.1E+02 0.0046 28.7 17.7 108 34-150 324-452 (499)
302 PRK00092 ribosome maturation p 56.9 1.1E+02 0.0025 25.3 9.2 92 47-143 8-100 (154)
303 cd04923 ACT_AK-LysC-DapG-like_ 56.9 55 0.0012 21.7 8.1 31 118-148 2-35 (63)
304 PF04083 Abhydro_lipase: Parti 56.0 38 0.00083 23.8 5.2 33 53-85 2-34 (63)
305 PRK14639 hypothetical protein; 54.1 1.1E+02 0.0023 25.2 8.4 88 52-144 3-91 (140)
306 cd04914 ACT_AKi-DapG-BS_1 ACT 53.9 23 0.00051 24.9 3.9 43 37-83 3-46 (67)
307 cd04890 ACT_AK-like_1 ACT doma 53.4 25 0.00054 23.8 3.9 37 124-164 11-47 (62)
308 COG3283 TyrR Transcriptional r 53.3 11 0.00025 36.1 2.7 35 250-284 3-37 (511)
309 PRK08961 bifunctional aspartat 52.6 2E+02 0.0044 30.9 12.3 33 115-147 321-356 (861)
310 cd04921 ACT_AKi-HSDH-ThrA-like 52.0 83 0.0018 22.3 8.9 35 117-151 2-39 (80)
311 PRK14633 hypothetical protein; 50.6 1.5E+02 0.0032 24.7 9.3 91 48-144 6-97 (150)
312 PRK14638 hypothetical protein; 50.2 1.5E+02 0.0032 24.6 9.1 89 47-142 9-101 (150)
313 cd04933 ACT_AK1-AT_1 ACT domai 49.8 20 0.00044 26.3 3.1 42 254-299 11-52 (78)
314 PRK05925 aspartate kinase; Pro 49.6 2.7E+02 0.0058 27.5 16.7 92 45-146 311-404 (440)
315 TIGR02079 THD1 threonine dehyd 49.6 1.2E+02 0.0026 29.4 9.3 37 33-69 323-359 (409)
316 cd04933 ACT_AK1-AT_1 ACT domai 48.0 19 0.00042 26.4 2.7 37 124-164 12-48 (78)
317 cd04920 ACT_AKiii-DAPDC_2 ACT 47.1 36 0.00078 23.5 3.9 27 249-275 2-31 (63)
318 PRK14632 hypothetical protein; 47.0 1.8E+02 0.0038 24.8 8.8 91 48-144 10-101 (172)
319 cd07253 Glo_EDI_BRP_like_2 Thi 46.2 77 0.0017 23.8 6.2 55 248-305 69-124 (125)
320 COG2061 ACT-domain-containing 46.1 39 0.00086 28.3 4.5 48 247-294 5-57 (170)
321 COG0779 Uncharacterized protei 43.5 1.9E+02 0.0042 24.2 8.3 90 45-142 7-100 (153)
322 PRK08639 threonine dehydratase 43.1 1.6E+02 0.0035 28.6 9.1 37 33-69 334-370 (420)
323 cd04934 ACT_AK-Hom3_1 CT domai 42.5 1.3E+02 0.0027 21.6 6.9 54 124-186 12-65 (73)
324 cd07247 SgaA_N_like N-terminal 41.9 1.1E+02 0.0024 22.8 6.4 51 33-89 60-110 (114)
325 PRK00907 hypothetical protein; 41.4 1.6E+02 0.0034 22.4 7.2 49 116-164 17-69 (92)
326 PF12681 Glyoxalase_2: Glyoxal 40.7 1.4E+02 0.0031 21.8 6.8 54 245-304 55-108 (108)
327 PLN02550 threonine dehydratase 40.0 4.4E+02 0.0095 27.2 16.6 136 115-291 416-553 (591)
328 cd04934 ACT_AK-Hom3_1 CT domai 39.6 29 0.00064 25.0 2.6 25 255-279 12-36 (73)
329 cd04915 ACT_AK-Ectoine_2 ACT d 39.1 78 0.0017 22.0 4.7 35 248-282 3-39 (66)
330 cd07261 Glo_EDI_BRP_like_11 Th 37.3 70 0.0015 24.0 4.6 52 34-89 59-110 (114)
331 cd08349 BLMA_like Bleomycin bi 35.8 1.2E+02 0.0027 22.2 5.8 52 247-304 59-111 (112)
332 cd07238 Glo_EDI_BRP_like_5 Thi 35.8 1.8E+02 0.0039 21.6 6.7 52 248-305 59-110 (112)
333 cd04917 ACT_AKiii-LysC-EC_2 AC 32.5 1.6E+02 0.0035 19.9 8.1 25 117-141 2-29 (64)
334 COG3283 TyrR Transcriptional r 31.0 68 0.0015 31.1 4.1 34 118-151 2-35 (511)
335 COG2061 ACT-domain-containing 30.9 63 0.0014 27.1 3.4 33 115-147 4-36 (170)
336 cd04915 ACT_AK-Ectoine_2 ACT d 30.6 1.9E+02 0.004 20.0 9.0 34 117-150 3-38 (66)
337 cd07263 Glo_EDI_BRP_like_16 Th 30.4 2.2E+02 0.0048 20.8 6.5 50 249-305 70-119 (119)
338 PRK08841 aspartate kinase; Val 29.0 79 0.0017 30.6 4.4 34 246-279 317-350 (392)
339 COG3603 Uncharacterized conser 28.6 1.6E+02 0.0035 23.6 5.2 43 232-278 52-97 (128)
340 PRK00907 hypothetical protein; 28.1 2.5E+02 0.0053 21.4 6.0 64 36-105 18-85 (92)
341 cd09013 BphC-JF8_N_like N-term 27.3 2.5E+02 0.0055 21.1 6.4 54 248-305 64-117 (121)
342 cd08352 Glo_EDI_BRP_like_1 Thi 25.2 2.4E+02 0.0052 20.9 5.9 52 247-304 73-124 (125)
343 cd07245 Glo_EDI_BRP_like_9 Thi 24.4 1.4E+02 0.0031 21.5 4.3 48 35-89 65-112 (114)
344 PF13670 PepSY_2: Peptidase pr 24.2 2.7E+02 0.0059 20.1 5.6 41 261-304 31-71 (83)
345 cd04911 ACT_AKiii-YclM-BS_1 AC 23.6 2.7E+02 0.0058 20.4 5.3 56 124-188 12-67 (76)
346 cd07266 HPCD_N_class_II N-term 23.4 3.2E+02 0.007 20.4 6.5 59 246-306 60-118 (121)
347 COG2902 NAD-specific glutamate 23.2 98 0.0021 34.9 4.0 46 21-66 72-119 (1592)
348 PF02576 DUF150: Uncharacteris 22.9 3.6E+02 0.0078 21.8 6.7 86 52-141 2-87 (141)
349 PLN02828 formyltetrahydrofolat 22.6 6E+02 0.013 23.3 9.9 99 52-151 1-105 (268)
350 PRK14644 hypothetical protein; 22.1 4.4E+02 0.0095 21.5 7.3 78 53-141 5-85 (136)
351 cd08348 BphC2-C3-RGP6_C_like T 21.4 3.8E+02 0.0082 20.5 6.5 55 247-306 66-120 (134)
352 PF01709 Transcrip_reg: Transc 21.0 2.6E+02 0.0056 25.0 5.8 112 24-150 80-196 (234)
353 cd07265 2_3_CTD_N N-terminal d 20.9 3.7E+02 0.008 20.2 7.7 58 247-306 62-119 (122)
354 cd08359 Glo_EDI_BRP_like_22 Th 20.4 3.7E+02 0.008 20.0 6.5 50 249-304 69-118 (119)
355 PF00903 Glyoxalase: Glyoxalas 20.0 3.7E+02 0.008 19.8 6.0 51 250-302 77-127 (128)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.97 E-value=9.7e-31 Score=271.97 Aligned_cols=166 Identities=17% Similarity=0.222 Sum_probs=144.5
Q ss_pred CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc-cCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (311)
Q Consensus 111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (311)
+.+.+.++|+|+++||||||++|+++|+.+|+||++|+|+| .+|++.|+|+|.+ .+|.++. +++++.|++.|.++|.
T Consensus 672 ~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d-~~g~~~~-~~~~~~l~~~L~~aL~ 749 (854)
T PRK01759 672 RFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE-LNGKLLE-FDRRRQLEQALTKALN 749 (854)
T ss_pred cCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC-CCCCCCC-HHHHHHHHHHHHHHHc
Confidence 55678999999999999999999999999999999999998 6899999999999 6888885 5788999999999998
Q ss_pred CCCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhh
Q 021491 190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT 269 (311)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~ 269 (311)
+...+. . .. ++.++. +.| ..|++|.|||+.|..+|+|+|.|+|||||||+|+++|.
T Consensus 750 ~~~~~~---~-------~~-~~~~~~----~~~---------~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~ 805 (854)
T PRK01759 750 TNKLKK---L-------NL-EENHKL----QHF---------HVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFS 805 (854)
T ss_pred CCCCcc---h-------hc-cccccc----cCC---------CCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHH
Confidence 754321 0 00 011110 223 68999999999999999999999999999999999999
Q ss_pred cCCeEEEEEEEEecCCeEEEEEEEEecCCCeeE
Q 021491 270 DMEYVVFHATINTAGERAYLVINCYQFDSNYCC 302 (311)
Q Consensus 270 ~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~ 302 (311)
++|++|++|||+|.|++|+|+|||++.+|+++.
T Consensus 806 ~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~ 838 (854)
T PRK01759 806 ELNLNLLNAKITTIGEKAEDFFILTNQQGQALD 838 (854)
T ss_pred HCCCEEEEEEEcccCceEEEEEEEECCCCCcCC
Confidence 999999999999999999999999999999765
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.97 E-value=3.1e-30 Score=269.00 Aligned_cols=167 Identities=23% Similarity=0.205 Sum_probs=143.6
Q ss_pred CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (311)
Q Consensus 111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (311)
+...+.++|+|+++||||||++|+++|+.+|+||++|+|+|. +|++.|+|+|.+ .+|.++. ++++++|++.|.++|.
T Consensus 696 ~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~~-~~~~~~I~~~L~~aL~ 773 (884)
T PRK05007 696 QATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPLS-QDRHQVIRKALEQALT 773 (884)
T ss_pred cCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCCC-HHHHHHHHHHHHHHHc
Confidence 456689999999999999999999999999999999999988 569999999999 6888874 5788999999999998
Q ss_pred CCCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhh
Q 021491 190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT 269 (311)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~ 269 (311)
+..... . . .++.+.. .+++ ..|++|.|+|+.|..+|+|+|.|+|||||||+|+++|.
T Consensus 774 ~~~~~~---~-~-------~~~~~~~---~~~~---------~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~ 830 (884)
T PRK05007 774 QSSPQP---P-K-------PRRLPAK---LRHF---------NVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFA 830 (884)
T ss_pred CCCCCc---c-c-------ccccccc---cCCC---------CCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHH
Confidence 754321 1 1 1111110 0223 68999999999999999999999999999999999999
Q ss_pred cCCeEEEEEEEEecCCeEEEEEEEEecCCCeeE
Q 021491 270 DMEYVVFHATINTAGERAYLVINCYQFDSNYCC 302 (311)
Q Consensus 270 ~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~ 302 (311)
++|++|++|||+|.|++|+|+|||++.+|+++.
T Consensus 831 ~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~ 863 (884)
T PRK05007 831 DLGISLHGARITTIGERVEDLFILATADRRALN 863 (884)
T ss_pred HCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC
Confidence 999999999999999999999999999998764
No 3
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=3.7e-28 Score=252.68 Aligned_cols=176 Identities=22% Similarity=0.343 Sum_probs=152.1
Q ss_pred hHHHHHHHhcC-CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCCC
Q 021491 11 DEYEKLVIRMN-TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNK 88 (311)
Q Consensus 11 ~~~~~~~~~~~-~~~V~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~~ 88 (311)
.||.+++.... .|.|.+++.++.++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++++|.+
T Consensus 652 ~~h~~~~~~~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~ 731 (854)
T PRK01759 652 AWHALLLLDFRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKL 731 (854)
T ss_pred HHHHHHHHhcCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCC
Confidence 36777775554 5788899999999999999999999999999999999999999999998 899999999999999998
Q ss_pred CCcH---HHHHHHHHHhhhccC-----C----------C------CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeE
Q 021491 89 LTDE---SVISYIEQSLETIHY-----G----------R------SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSV 144 (311)
Q Consensus 89 ~~~~---~~~~~l~~~L~~~~~-----r----------r------~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI 144 (311)
++++ .+.+.|+++|.+... + + ++.+..+|+|+|.++|||||||+|+++|.++|++|
T Consensus 732 ~~~~~~~~l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i 811 (854)
T PRK01759 732 LEFDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNL 811 (854)
T ss_pred CCHHHHHHHHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEE
Confidence 7643 355666666765321 0 0 36778999999999999999999999999999999
Q ss_pred EEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491 145 VEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (311)
Q Consensus 145 ~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (311)
+.|+|.|.|+++.|+|||++ .+|.+++++++ +.|+++|.++|
T Consensus 812 ~~AkI~T~gerv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 812 LNAKITTIGEKAEDFFILTN-QQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred EEEEEcccCceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHh
Confidence 99999999999999999999 78999987555 89999988765
No 4
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.96 E-value=7.7e-28 Score=251.13 Aligned_cols=178 Identities=21% Similarity=0.269 Sum_probs=154.5
Q ss_pred hHHHHHHHhc--CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCC
Q 021491 11 DEYEKLVIRM--NTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGN 87 (311)
Q Consensus 11 ~~~~~~~~~~--~~~~V~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~ 87 (311)
.||.+++.+. ..|.|.+++.++.++++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|++++|.
T Consensus 675 ~~h~~~~~~~~~~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~ 754 (884)
T PRK05007 675 AWHARHLLQHDLDKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGS 754 (884)
T ss_pred HHHHHHHHhccCCCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCC
Confidence 4677777665 36888899988999999999999999999999999999999999999997 67899999999999998
Q ss_pred CCCcH---HHHHHHHHHhhhccC------C----------C------CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCC
Q 021491 88 KLTDE---SVISYIEQSLETIHY------G----------R------SNSFNGLTALELTGTDRVGLLSEVFAVLADLQC 142 (311)
Q Consensus 88 ~~~~~---~~~~~l~~~L~~~~~------r----------r------~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~gl 142 (311)
+++.+ .+.+.|+++|.+... + + ++.+..+|+|+|.++|||||||+|+++|.++|+
T Consensus 755 ~~~~~~~~~I~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l 834 (884)
T PRK05007 755 PLSQDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGI 834 (884)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCc
Confidence 87542 356777777765421 0 0 367889999999999999999999999999999
Q ss_pred eEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491 143 SVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (311)
Q Consensus 143 nI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (311)
+|++|+|.|.|+++.|+|||++ .+|.+++ ++..+.|++.|.++|..
T Consensus 835 ~I~~AkI~T~gera~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 835 SLHGARITTIGERVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred EEEEEEEeccCceEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 6888887 67889999999988754
No 5
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=3e-27 Score=246.82 Aligned_cols=180 Identities=21% Similarity=0.361 Sum_probs=153.5
Q ss_pred hHHHHHHHhcC---CCeEEEEecCC---CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEe
Q 021491 11 DEYEKLVIRMN---TPRVVIDNAVC---PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTD 83 (311)
Q Consensus 11 ~~~~~~~~~~~---~~~V~~~~~~~---~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~ 83 (311)
.||.+++.+.. .|.|.+.+.++ .++++|+|+++||||||+++|++|+.+|+||++|+|+| .+|+++|+|+|++
T Consensus 674 ~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d 753 (895)
T PRK00275 674 AWHTEAILQHPDDGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD 753 (895)
T ss_pred HHHHHHHHhcccCCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC
Confidence 47888887653 57777877665 58999999999999999999999999999999999986 7899999999999
Q ss_pred CCCCCCCc-H----HHHHHHHHHhhhccC-------C-----C-----------CCCCCCeEEEEEEeCCcccHHHHHHH
Q 021491 84 LNGNKLTD-E----SVISYIEQSLETIHY-------G-----R-----------SNSFNGLTALELTGTDRVGLLSEVFA 135 (311)
Q Consensus 84 ~~g~~~~~-~----~~~~~l~~~L~~~~~-------r-----r-----------~~~~~~~t~i~V~~~DrpGLL~~I~~ 135 (311)
++|.++.. + .+.+.|+++|.+... + + ++.+.+.|+|+|+++||||||++|++
T Consensus 754 ~~g~~~~~~~~r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~ 833 (895)
T PRK00275 754 DDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGR 833 (895)
T ss_pred CCCCCccchHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHH
Confidence 99887532 2 355667777765431 0 0 25667899999999999999999999
Q ss_pred HHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491 136 VLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD 191 (311)
Q Consensus 136 ~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (311)
+|+.+|+||++|+|.|.|+++.|+|||++ .+|.++.+++++++|++.|.++|.+.
T Consensus 834 ~L~~~~l~I~~AkI~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 834 IFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred HHHHCCCEEEEeEEEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999 68888887788899999999988653
No 6
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.95 E-value=1.9e-27 Score=248.47 Aligned_cols=169 Identities=29% Similarity=0.300 Sum_probs=144.0
Q ss_pred CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEE-ccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW-THNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (311)
Q Consensus 112 ~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~-T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (311)
...+.++|+|+++||||||++|+++|+.+|+||++|+|+ |.+|++.|+|||++ .+|.++.+++++++|++.|.++|.+
T Consensus 664 ~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 664 RPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLVDVLAG 742 (850)
T ss_pred CCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 346889999999999999999999999999999999999 55899999999999 6888887777889999999999987
Q ss_pred CCCcchhhhhhhhccccchh-hhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhh
Q 021491 191 DNDIRSAKMTVSMAVTHTER-RLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT 269 (311)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~ 269 (311)
..... ..+.. .+ +.++. +++ .+|++|.|+|+.+.++|+|+|.|.|||||||+|+++|+
T Consensus 743 ~~~~~---~~~~~-----~~~~~~~~----~~~---------~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~ 801 (850)
T TIGR01693 743 LAKDP---DTISA-----RRARRRRL----QHF---------AVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLE 801 (850)
T ss_pred CCccc---ccccc-----ccCCcccc----cCC---------CCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHH
Confidence 54321 11100 00 11110 223 68999999999999999999999999999999999999
Q ss_pred cCCeEEEEEEEEecCCeEEEEEEEEecCCCeeE
Q 021491 270 DMEYVVFHATINTAGERAYLVINCYQFDSNYCC 302 (311)
Q Consensus 270 ~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~ 302 (311)
++|++|++|+|+|.|++++|+|||++..|.+..
T Consensus 802 ~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~ 834 (850)
T TIGR01693 802 ELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLT 834 (850)
T ss_pred HCCCeEEEEEEEecCccceeEEEEECCCCCCCC
Confidence 999999999999999999999999999988754
No 7
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2e-26 Score=239.42 Aligned_cols=177 Identities=22% Similarity=0.218 Sum_probs=149.1
Q ss_pred hHHHHHHHhcC--CCeEEEEe-cCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCC
Q 021491 11 DEYEKLVIRMN--TPRVVIDN-AVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNG 86 (311)
Q Consensus 11 ~~~~~~~~~~~--~~~V~~~~-~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g 86 (311)
.||.+++.+.. .|.|.+.. .++.+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+|+++|+|+|.+++|
T Consensus 663 ~~h~~~~~~~~~~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~ 742 (869)
T PRK04374 663 AWQAASLIEVEIGQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDT 742 (869)
T ss_pred HHHHHHHHhcCCCCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCC
Confidence 46777776643 56666655 66779999999999999999999999999999999999997 8999999999999888
Q ss_pred CCCCc-HHHHHHHHHHhhhccC------C------C-----------CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCC
Q 021491 87 NKLTD-ESVISYIEQSLETIHY------G------R-----------SNSFNGLTALELTGTDRVGLLSEVFAVLADLQC 142 (311)
Q Consensus 87 ~~~~~-~~~~~~l~~~L~~~~~------r------r-----------~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~gl 142 (311)
.+... .++.+.|+++|.+... + + ++.+.+.|+|+|.+.||||||++|+++|+++|+
T Consensus 743 ~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l 822 (869)
T PRK04374 743 YADGDPQRLAAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHL 822 (869)
T ss_pred CChHHHHHHHHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCC
Confidence 64322 3467788888876321 1 0 256678999999999999999999999999999
Q ss_pred eEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491 143 SVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (311)
Q Consensus 143 nI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (311)
||++|+|+|.|+++.|+|||++ .+|.++.++++ +.|++.|.++|.
T Consensus 823 ~I~~AkI~T~g~~a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 823 RVHDARIATFGERAEDQFQITD-EHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred eEEEeEEEecCCEEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence 9999999999999999999999 67888766555 899999988774
No 8
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2.6e-26 Score=239.83 Aligned_cols=166 Identities=22% Similarity=0.326 Sum_probs=142.1
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCC-ChHHHHHHHHHHHHHhcCC
Q 021491 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIE-DSQQIDRIEARLRNVLKGD 191 (311)
Q Consensus 114 ~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~-~~~~~~~l~~~L~~~L~~~ 191 (311)
.+.+.|.|+++||||||++|+++|+.+|+||++|+|+|. +|.+.|+|+|.+ .+|.++. +++++++|++.|.++|.+.
T Consensus 702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999999999999999999876 789999999999 6788753 4578899999999999886
Q ss_pred CCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcC
Q 021491 192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDM 271 (311)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~ 271 (311)
..+. ..+ .++.+... +.+ ..++.|.|+++.+..+|+|+|.|+||||||++|+.+|+++
T Consensus 781 ~~~~---~~~-------~~~~~~~~---~~~---------~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~ 838 (895)
T PRK00275 781 DDYP---TII-------QRRVPRQL---KHF---------AFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEF 838 (895)
T ss_pred Cccc---hhh-------hhhhhhhc---cCC---------CCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHC
Confidence 5432 111 12221110 223 5789999999999999999999999999999999999999
Q ss_pred CeEEEEEEEEecCCeEEEEEEEEecCCCeeE
Q 021491 272 EYVVFHATINTAGERAYLVINCYQFDSNYCC 302 (311)
Q Consensus 272 gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~ 302 (311)
|++|++|+|.|.|++|.|+|||++.+|++..
T Consensus 839 ~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~ 869 (895)
T PRK00275 839 DLSLQNAKIATLGERVEDVFFITDADNQPLS 869 (895)
T ss_pred CCEEEEeEEEecCCEEEEEEEEECCCCCCCC
Confidence 9999999999999999999999999998754
No 9
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=4.2e-26 Score=236.97 Aligned_cols=164 Identities=24% Similarity=0.210 Sum_probs=139.0
Q ss_pred CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (311)
Q Consensus 112 ~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (311)
...+.+.|.|+++||||||++||++|+.+|+||++|+|+|. +|.+.|+|+|.+ +++.+ .+.+.++++.|.++|.+
T Consensus 686 ~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~-~~~~~---~~~~~~i~~~l~~~l~~ 761 (869)
T PRK04374 686 PDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLP-QDTYA---DGDPQRLAAALRQVLAG 761 (869)
T ss_pred cCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeC-CCCCC---hHHHHHHHHHHHHHHcC
Confidence 45578999999999999999999999999999999999985 799999999998 56654 35678899999999988
Q ss_pred CCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhc
Q 021491 191 DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTD 270 (311)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~ 270 (311)
+..+. . +. .++.... .+ +..+||+|.|+|+.+..+|+|+|.|.|||||||+|+.+|++
T Consensus 762 ~~~~~---~-~~------~~~~~~~---~~---------~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~ 819 (869)
T PRK04374 762 DLQKV---R-PA------RRAVPRQ---LR---------HFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRM 819 (869)
T ss_pred CCCcc---c-cc------cccCccc---cc---------CCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHH
Confidence 65322 1 10 1111110 02 33689999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEEecCCeEEEEEEEEecCCCee
Q 021491 271 MEYVVFHATINTAGERAYLVINCYQFDSNYC 301 (311)
Q Consensus 271 ~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~ 301 (311)
+|++|++|+|+|.|++|+|+|||++.+|.+.
T Consensus 820 ~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~ 850 (869)
T PRK04374 820 QHLRVHDARIATFGERAEDQFQITDEHDRPL 850 (869)
T ss_pred CCCeEEEeEEEecCCEEEEEEEEECCCCCcC
Confidence 9999999999999999999999999999864
No 10
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=1e-25 Score=234.40 Aligned_cols=174 Identities=19% Similarity=0.211 Sum_probs=146.4
Q ss_pred hHHHHHHHhcC---CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCC
Q 021491 11 DEYEKLVIRMN---TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNG 86 (311)
Q Consensus 11 ~~~~~~~~~~~---~~~V~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g 86 (311)
.||.+++.+.. .|.|.+...++.+.++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|++++|
T Consensus 651 ~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~ 730 (856)
T PRK03059 651 AWHTRHLYRHVDTDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEE 730 (856)
T ss_pred HHHHHHHHhcccCCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCC
Confidence 47888887753 5777788888889999999999999999999999999999999999986 8899999999999877
Q ss_pred CCCCc----HHHHHHHHHHhhhccC-------C-----C-----------CCCCCCeEEEEEEeCCcccHHHHHHHHHHh
Q 021491 87 NKLTD----ESVISYIEQSLETIHY-------G-----R-----------SNSFNGLTALELTGTDRVGLLSEVFAVLAD 139 (311)
Q Consensus 87 ~~~~~----~~~~~~l~~~L~~~~~-------r-----r-----------~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~ 139 (311)
. ..+ +++.+.|+++|.+... + + ++...+.|+|+|+++||||||++|+++|+.
T Consensus 731 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~ 809 (856)
T PRK03059 731 D-VHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAE 809 (856)
T ss_pred C-CChHHHHHHHHHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHH
Confidence 7 322 2466777777766321 1 0 255668999999999999999999999999
Q ss_pred CCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491 140 LQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (311)
Q Consensus 140 ~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (311)
+|+||++|+|+|.||++.|+|||.+ . +..+++++++|++.|.++|.
T Consensus 810 ~~l~I~~AkI~T~~~~v~DvF~V~~-~---~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 810 HRVSVHTAKINTLGERVEDTFLIDG-S---GLSDNRLQIQLETELLDALA 855 (856)
T ss_pred CCCeEEEEEEeecCCEEEEEEEEcC-C---CCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999965 2 24456888999999988763
No 11
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.5e-26 Score=230.24 Aligned_cols=165 Identities=25% Similarity=0.312 Sum_probs=140.3
Q ss_pred CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (311)
Q Consensus 112 ~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (311)
...+.+.|.|+++|+|+||+.+++++...|.||++|+|+|. +|++.|+|+|.+ .+|.++. +.+...++..|.+++..
T Consensus 680 ~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~-~~g~~~~-~dr~~~~~~~l~~~l~s 757 (867)
T COG2844 680 PHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLE-PDGFPVE-EDRRAALRGELIEALLS 757 (867)
T ss_pred ccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEec-CCCCccc-hhHHHHHHHHHHHHHhc
Confidence 34477999999999999999999999999999999999986 799999999999 6788886 57777788888877654
Q ss_pred CCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhc
Q 021491 191 DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTD 270 (311)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~ 270 (311)
....+ . ..+|.++.. ++| .+||+|+|.|+.+...|+|||++.||||||++++.+|++
T Consensus 758 ~~~~~---~--------~~~r~~r~~---~~f---------~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~d 814 (867)
T COG2844 758 GKAQP---P--------RRRRIPRKL---RHF---------PIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFAD 814 (867)
T ss_pred CCCCC---c--------cccccCccc---cee---------ccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHh
Confidence 33211 1 112221110 345 799999999999999999999999999999999999999
Q ss_pred CCeEEEEEEEEecCCeEEEEEEEEecCCCee
Q 021491 271 MEYVVFHATINTAGERAYLVINCYQFDSNYC 301 (311)
Q Consensus 271 ~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~ 301 (311)
+|++|++|+|+|.||+|+|+|||++..|++.
T Consensus 815 l~l~i~~AkItT~GErveD~F~vt~~~~~~l 845 (867)
T COG2844 815 LGLSLHSAKITTFGERVEDVFIVTDADGQAL 845 (867)
T ss_pred cccceeeeeeccccccceeEEEEeccccccC
Confidence 9999999999999999999999999999876
No 12
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=1.9e-25 Score=234.99 Aligned_cols=171 Identities=24% Similarity=0.412 Sum_probs=144.3
Q ss_pred CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (311)
Q Consensus 111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (311)
+...+.+.|+|+++||||||++|+++|+.+|+||++|+|+|. +|.+.|+|+|.+ .+|.+..++++++.|++.|.+++.
T Consensus 727 ~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~~~l~ 805 (931)
T PRK05092 727 DPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIEDALS 805 (931)
T ss_pred cCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHc
Confidence 345578999999999999999999999999999999999985 789999999998 678776667889999999999987
Q ss_pred CCCCcchhhhhhhhccccchhhh-hhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHh
Q 021491 190 GDNDIRSAKMTVSMAVTHTERRL-HQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTL 268 (311)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l 268 (311)
+..++. ..+ .+|. ... ..++| ..+++|.|+|+.+..+|+|+|.++||||||++|+++|
T Consensus 806 ~~~~~~---~~~-------~~r~~~~~--~~~~~---------~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l 864 (931)
T PRK05092 806 GEVRLP---EAL-------AKRTKPKK--RARAF---------HVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRAL 864 (931)
T ss_pred CCCCCc---ccc-------ccccCccc--cccCC---------CCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHH
Confidence 754432 111 1111 100 00223 6789999999999999999999999999999999999
Q ss_pred hcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEE
Q 021491 269 TDMEYVVFHATINTAGERAYLVINCYQFDSNYCCI 303 (311)
Q Consensus 269 ~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~ 303 (311)
+++|++|.+|+|.|.|+++.|+|||++.+|+++..
T Consensus 865 ~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~ 899 (931)
T PRK05092 865 SDLNLNIASAHIATYGERAVDVFYVTDLFGLKITN 899 (931)
T ss_pred HHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCC
Confidence 99999999999999999999999999999987643
No 13
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=2.4e-25 Score=229.65 Aligned_cols=161 Identities=24% Similarity=0.255 Sum_probs=140.5
Q ss_pred CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491 21 NTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (311)
Q Consensus 21 ~~~~V~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (311)
..|.|.+.+.+ .+.++|+|+++||||||++||++|+.+||||++|+|+|.+|+++|+|+|.+++|.+...+++.+.|++
T Consensus 586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~ 664 (774)
T PRK03381 586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR 664 (774)
T ss_pred CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence 56788888877 89999999999999999999999999999999999999999999999999988886665678888888
Q ss_pred HhhhccC--------------CC-------------CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC
Q 021491 101 SLETIHY--------------GR-------------SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN 153 (311)
Q Consensus 101 ~L~~~~~--------------rr-------------~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~ 153 (311)
+|.+... ++ ++.+.+.++|+|.++||||||++|+++|+.+|+||++|+|.|.|
T Consensus 665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g 744 (774)
T PRK03381 665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG 744 (774)
T ss_pred HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence 8876411 10 14455789999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 021491 154 GRIASLIYVKDCNSGSPIEDSQQIDRIEARLR 185 (311)
Q Consensus 154 ~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (311)
+++.|+|||++ .+|.++.++ .+.|++.|.
T Consensus 745 ~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 745 ADVVDVFYVTG-AAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred CeEEEEEEEEC-CCCCcCchH--HHHHHHHhh
Confidence 99999999999 688888753 567776653
No 14
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=8.1e-25 Score=230.22 Aligned_cols=180 Identities=22% Similarity=0.254 Sum_probs=153.5
Q ss_pred hHHHHHHHhcC----CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCC
Q 021491 11 DEYEKLVIRMN----TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLN 85 (311)
Q Consensus 11 ~~~~~~~~~~~----~~~V~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~ 85 (311)
.||.+++.+.. .+.|.+++.++.++++|+|+++||||||++||++|+.+|+||++|+|+| .+|+++|+|+|++++
T Consensus 704 ~~h~~~~~~~~~~~~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~ 783 (931)
T PRK05092 704 ARHARFIRDADDAGRPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAF 783 (931)
T ss_pred HHHHHHHHhccccCCCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCC
Confidence 47888887753 3577788888889999999999999999999999999999999999997 889999999999988
Q ss_pred CCCCCcH----HHHHHHHHHhhhccC-------C-----C-------------CCCCCCeEEEEEEeCCcccHHHHHHHH
Q 021491 86 GNKLTDE----SVISYIEQSLETIHY-------G-----R-------------SNSFNGLTALELTGTDRVGLLSEVFAV 136 (311)
Q Consensus 86 g~~~~~~----~~~~~l~~~L~~~~~-------r-----r-------------~~~~~~~t~i~V~~~DrpGLL~~I~~~ 136 (311)
|.+..++ .+.+.|+.+|.+... + + ++.+.+.|+|+|.++||||||++|+++
T Consensus 784 g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~ 863 (931)
T PRK05092 784 GRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRA 863 (931)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHH
Confidence 8776554 355566666644211 0 0 245667899999999999999999999
Q ss_pred HHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491 137 LADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD 191 (311)
Q Consensus 137 L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (311)
|+++|+||++|+|.|.++++.|+|+|++ .+|.++.+++.++.|++.|.++|.+.
T Consensus 864 l~~~gl~I~~A~I~T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~ 917 (931)
T PRK05092 864 LSDLNLNIASAHIATYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEG 917 (931)
T ss_pred HHHCCceEEEEEEEEcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999 68888888778899999999988663
No 15
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=2.2e-25 Score=229.87 Aligned_cols=166 Identities=25% Similarity=0.238 Sum_probs=137.8
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCC
Q 021491 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDND 193 (311)
Q Consensus 114 ~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~ 193 (311)
.+.+.|+|+++||||||++|+++|+.+|+||++|+|+|.+|.+.|+|+|.+ +.|.+. .++++++.|.++|.++..
T Consensus 597 ~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~-~~~~~~----~~~~l~~~L~~~L~~~~~ 671 (774)
T PRK03381 597 PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP-RFGSPP----DAALLRQDLRRALDGDLD 671 (774)
T ss_pred CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcc----hHHHHHHHHHHHHcCCCc
Confidence 688999999999999999999999999999999999998999999999998 566643 248899999999988543
Q ss_pred cchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcCCe
Q 021491 194 IRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEY 273 (311)
Q Consensus 194 ~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi 273 (311)
.. ..+ .++.... .+. ...+...|+.|.++++.+..+|+|+|.|+|||||||+|+.+|+++|+
T Consensus 672 ~~---~~~-------~~~~~~~----~~~----~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~l 733 (774)
T PRK03381 672 VL---ARL-------AAREAAA----AAV----PVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGV 733 (774)
T ss_pred hh---hhh-------hcccccc----ccc----ccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCC
Confidence 21 111 0110000 000 00133688999999999999999999999999999999999999999
Q ss_pred EEEEEEEEecCCeEEEEEEEEecCCCeeE
Q 021491 274 VVFHATINTAGERAYLVINCYQFDSNYCC 302 (311)
Q Consensus 274 ~I~~A~I~T~g~~a~D~F~v~~~~g~~~~ 302 (311)
||++|+|+|.|++|+|+|||++.+|+++.
T Consensus 734 nI~~AkI~T~g~~a~D~F~V~d~~g~~~~ 762 (774)
T PRK03381 734 DVRWARVATLGADVVDVFYVTGAAGGPLA 762 (774)
T ss_pred eEEEEEEeecCCeEEEEEEEECCCCCcCc
Confidence 99999999999999999999999998764
No 16
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.94 E-value=7e-25 Score=229.18 Aligned_cols=176 Identities=23% Similarity=0.289 Sum_probs=151.8
Q ss_pred hHHHHHHHhcC---CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-EcCCEEEEEEEEEeCCC
Q 021491 11 DEYEKLVIRMN---TPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SDGRFFMDVFHVTDLNG 86 (311)
Q Consensus 11 ~~~~~~~~~~~---~~~V~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~-t~~g~~~d~f~v~~~~g 86 (311)
.||.+++.+.. .|.|.+.+....++++|+|+++||||||++||++|+.+|+||++|+|+ |.+|+++|+|+|++.+|
T Consensus 641 ~~h~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g 720 (850)
T TIGR01693 641 AWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFG 720 (850)
T ss_pred HHHHHHHHhcccCCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCC
Confidence 47888887753 578888876668999999999999999999999999999999999999 58999999999999999
Q ss_pred CCCCcHH----HHHHHHHHhhhccC------------CC-------------CCCCCCeEEEEEEeCCcccHHHHHHHHH
Q 021491 87 NKLTDES----VISYIEQSLETIHY------------GR-------------SNSFNGLTALELTGTDRVGLLSEVFAVL 137 (311)
Q Consensus 87 ~~~~~~~----~~~~l~~~L~~~~~------------rr-------------~~~~~~~t~i~V~~~DrpGLL~~I~~~L 137 (311)
.++.+++ +.+.|.++|.+... ++ ++.+..+|+|+|.+.||||||++|+++|
T Consensus 721 ~~~~~~~~~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l 800 (850)
T TIGR01693 721 SPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTL 800 (850)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHH
Confidence 8876643 55666667765210 00 3667789999999999999999999999
Q ss_pred HhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491 138 ADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (311)
Q Consensus 138 ~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (311)
+++|+||++|+|.|.|+++.|+|+|++ ..|.|+++ +..+.|++.|.++|
T Consensus 801 ~~~~~~i~~a~i~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 801 EELGLSIQSAKITTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred HHCCCeEEEEEEEecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence 999999999999999999999999998 67889876 77889999988765
No 17
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.3e-25 Score=220.01 Aligned_cols=177 Identities=24% Similarity=0.282 Sum_probs=145.4
Q ss_pred hHHHHHHHhc--CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCC
Q 021491 11 DEYEKLVIRM--NTPRVVIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGN 87 (311)
Q Consensus 11 ~~~~~~~~~~--~~~~V~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~ 87 (311)
.||++++.++ ++|.|.+...+..+.++|+|++||+|.||+.+|+++...|+||++|+|+| .+|+++|+|+|++++|.
T Consensus 658 awH~~~l~~~~~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~ 737 (867)
T COG2844 658 AWHARHLVRHDLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGF 737 (867)
T ss_pred hHHHHHHHhhhccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCC
Confidence 5899988887 36899888777778999999999999999999999999999999999996 88999999999999999
Q ss_pred CCCcHHH---HHHHHHHhhhc-cC--------C--C-----------CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCC
Q 021491 88 KLTDESV---ISYIEQSLETI-HY--------G--R-----------SNSFNGLTALELTGTDRVGLLSEVFAVLADLQC 142 (311)
Q Consensus 88 ~~~~~~~---~~~l~~~L~~~-~~--------r--r-----------~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~gl 142 (311)
+++.++. ...+.+++... .. | + |+.+...++|+|.+.||||||++++++|+++|+
T Consensus 738 ~~~~dr~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l 817 (867)
T COG2844 738 PVEEDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGL 817 (867)
T ss_pred ccchhHHHHHHHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhccc
Confidence 8885432 23333333221 11 1 0 255667999999999999999999999999999
Q ss_pred eEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491 143 SVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (311)
Q Consensus 143 nI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (311)
+|++|+|.|.|++++|+|||++ ..|.++++ +..+.+.+.+.+.+.
T Consensus 818 ~i~~AkItT~GErveD~F~vt~-~~~~~l~~-~~~q~l~~~ll~al~ 862 (867)
T COG2844 818 SLHSAKITTFGERVEDVFIVTD-ADGQALNA-ELRQSLLQRLLEALL 862 (867)
T ss_pred ceeeeeeccccccceeEEEEec-cccccCCH-HHHHHHHHHHHHHhc
Confidence 9999999999999999999999 68888854 444555555555443
No 18
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.93 E-value=7.9e-25 Score=227.77 Aligned_cols=163 Identities=20% Similarity=0.237 Sum_probs=136.2
Q ss_pred CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (311)
Q Consensus 111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (311)
....+.+.|.|+++||||||++|+++|+.+|+||++|+|+|. +|.+.|+|+|.+ ++|. ..+++++++|++.|.++|.
T Consensus 673 ~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~-~~~~-~~~~~~~~~i~~~l~~~l~ 750 (856)
T PRK03059 673 SPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD-PEED-VHYRDIINLVEHELAERLA 750 (856)
T ss_pred cCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC-CCCC-CChHHHHHHHHHHHHHHHc
Confidence 345588999999999999999999999999999999999875 799999999998 5555 4446788999999999998
Q ss_pred CCCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhh
Q 021491 190 GDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLT 269 (311)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~ 269 (311)
++.++. ..+ .+|.+.. .+.| ..|+.|.|+++.+..+|+|+|.|+|||||||+|+.+|+
T Consensus 751 ~~~~~~---~~~-------~~~~~~~---~~~~---------~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~ 808 (856)
T PRK03059 751 EQAPLP---EPS-------KGRLSRQ---VKHF---------PITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLA 808 (856)
T ss_pred CCCCcc---hhh-------ccccccc---ccCC---------CCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHH
Confidence 865432 101 1121110 0223 68899999999999999999999999999999999999
Q ss_pred cCCeEEEEEEEEecCCeEEEEEEEEecC
Q 021491 270 DMEYVVFHATINTAGERAYLVINCYQFD 297 (311)
Q Consensus 270 ~~gi~I~~A~I~T~g~~a~D~F~v~~~~ 297 (311)
++|++|++|+|.|.|++|.|+|||.+.+
T Consensus 809 ~~~l~I~~AkI~T~~~~v~DvF~V~~~~ 836 (856)
T PRK03059 809 EHRVSVHTAKINTLGERVEDTFLIDGSG 836 (856)
T ss_pred HCCCeEEEEEEeecCCEEEEEEEEcCCC
Confidence 9999999999999999999999995443
No 19
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.82 E-value=2.8e-20 Score=136.66 Aligned_cols=57 Identities=60% Similarity=0.877 Sum_probs=54.8
Q ss_pred eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEE
Q 021491 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCI 303 (311)
Q Consensus 247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~ 303 (311)
+|+|||.|+|||||||+|+++|.++|++|++|+|+|+|++|+|+|||++.+|+++..
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~ 57 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLST 57 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCC
Confidence 689999999999999999999999999999999999999999999999999998753
No 20
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.81 E-value=4.7e-20 Score=134.50 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=54.1
Q ss_pred eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeE
Q 021491 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCC 302 (311)
Q Consensus 247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~ 302 (311)
+|+|+|.++|||||||+|+++|+++|++|++|+|+|+|++|+|+|||++.+|+|+.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999874
No 21
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.78 E-value=2.5e-18 Score=126.31 Aligned_cols=74 Identities=19% Similarity=0.313 Sum_probs=69.9
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (311)
+|+|+|.++||||||++|+++|+++|++|..|+|.|.|+++.|+|||++ .+|.|+.++++.+.|++.|.+++..
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~~ 74 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIER 74 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999999999999999 7899999888999999999988753
No 22
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.76 E-value=6.5e-18 Score=123.24 Aligned_cols=69 Identities=26% Similarity=0.400 Sum_probs=65.0
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLR 185 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (311)
+|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++ .+|.|+.+++.++.|++.|.
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~ 69 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG 69 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999999999999999 78999988888888888875
No 23
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.76 E-value=1.8e-18 Score=127.04 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=50.8
Q ss_pred eEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEE--ecCCeEEEEEEEEecCCCee
Q 021491 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATIN--TAGERAYLVINCYQFDSNYC 301 (311)
Q Consensus 248 tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~--T~g~~a~D~F~v~~~~g~~~ 301 (311)
|+|+|.|+|||||||+|+++|+++|++|++|||+ |+|++|+|+||| +.+|+++
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl 55 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKI 55 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCcc
Confidence 6899999999999999999999999999999999 999999999999 8888774
No 24
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.71 E-value=7.9e-17 Score=118.38 Aligned_cols=71 Identities=24% Similarity=0.333 Sum_probs=66.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEE--ccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW--THNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~--T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (311)
|+|+|.++|||||||+|+++|+++|++|++|+|. |.|++++|+||| + .+|.++.++++.+.|++.|.+++.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999999999 999999999999 6 578889888888999999988764
No 25
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.68 E-value=5.6e-16 Score=134.22 Aligned_cols=139 Identities=14% Similarity=0.139 Sum_probs=105.8
Q ss_pred CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD 191 (311)
Q Consensus 112 ~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (311)
++.++++|++.|+||||+++.|+++|+++||||.+++...++|.+.-++.|+. . ...+..|+..|.. +.+.
T Consensus 4 ~m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~----~----~~~~~~le~~L~~-l~~~ 74 (190)
T PRK11589 4 SSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG----S----WNAITLIESTLPL-KGAE 74 (190)
T ss_pred CcccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC----C----hhHHHHHHHHHHh-hhhh
Confidence 35578999999999999999999999999999999999999999999998865 2 2466788888775 3333
Q ss_pred CCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcC
Q 021491 192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDM 271 (311)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~ 271 (311)
.++. + ++ ++... +. + ......+.++|.+.|||||+++||++|+++
T Consensus 75 ~~L~-----i-----~v-~~~~~------~~-----------~-------~~~~~~~~v~v~G~DrPGIV~~vT~~la~~ 119 (190)
T PRK11589 75 LDLL-----I-----VM-KRTTA------RP-----------R-------PAMPATVWVQVEVADSPHLIERFTALFDSH 119 (190)
T ss_pred cCeE-----E-----EE-Eeccc------cc-----------c-------ccCCceEEEEEEECCCCCHHHHHHHHHHHc
Confidence 3332 1 01 11110 00 0 001113589999999999999999999999
Q ss_pred CeEEEEEEEEecCC--eEEEEEEEE
Q 021491 272 EYVVFHATINTAGE--RAYLVINCY 294 (311)
Q Consensus 272 gi~I~~A~I~T~g~--~a~D~F~v~ 294 (311)
|+||...+..|++. ...+.|.+.
T Consensus 120 ~iNI~~L~T~~~~a~~~~~~lf~~~ 144 (190)
T PRK11589 120 HMNIAELVSRTQPAEGERPAQLHIQ 144 (190)
T ss_pred CCChhheEEeeecCCCCCcccEEEE
Confidence 99999999999984 667777654
No 26
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.66 E-value=1.1e-15 Score=112.73 Aligned_cols=72 Identities=68% Similarity=1.122 Sum_probs=66.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCC-CCCCCChHHHHHHHHHHHHHhc
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNS-GSPIEDSQQIDRIEARLRNVLK 189 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~-g~~~~~~~~~~~l~~~L~~~L~ 189 (311)
|+|+|.++||||||++|+++|+++|+||++|+|+|.++++.|+|+|++ .+ +.++.+++++++|++.|.++|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d-~~~~~~~~~~~~~~~i~~~L~~~l~ 73 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD-EETGAPIDDPIRLASIEDRLDNVLR 73 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc-CcCCCCCCCHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999999999999999998 56 7777777889999999998775
No 27
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.62 E-value=5.5e-15 Score=128.02 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=109.1
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC----
Q 021491 32 CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY---- 107 (311)
Q Consensus 32 ~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~---- 107 (311)
...+.+|+++++||||+.+.++++|+++||||++.+....+|.+.-++.|. +. |.-...|+..|.....
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~----~~~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GS----WNAITLIESTLPLKGAELDL 77 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CC----hhHHHHHHHHHHhhhhhcCe
Confidence 457889999999999999999999999999999999999999888778774 22 3345556666544321
Q ss_pred ----CC-----CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCc------eEEEEEEEEecCCCCCCC
Q 021491 108 ----GR-----SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG------RIASLIYVKDCNSGSPIE 172 (311)
Q Consensus 108 ----rr-----~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~------~~~d~F~V~~~~~g~~~~ 172 (311)
++ +......+.++|++.||||++++++++|+++|+||.+.+..|.+. .+.-.|.+.-| .+
T Consensus 78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP-~~---- 152 (190)
T PRK11589 78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP-AS---- 152 (190)
T ss_pred EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC-CC----
Confidence 11 111223489999999999999999999999999999999988753 34444444441 11
Q ss_pred ChHHHHHHHHHHHHHhcCCCCc
Q 021491 173 DSQQIDRIEARLRNVLKGDNDI 194 (311)
Q Consensus 173 ~~~~~~~l~~~L~~~L~~~~~~ 194 (311)
...+.|++.|.+ +.+++.+
T Consensus 153 --~~~~~L~~~l~~-l~~eL~v 171 (190)
T PRK11589 153 --QDAANIEQAFKA-LCTELNA 171 (190)
T ss_pred --CCHHHHHHHHHH-HHHHhCc
Confidence 235778888886 4444444
No 28
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.62 E-value=4e-15 Score=109.48 Aligned_cols=71 Identities=27% Similarity=0.502 Sum_probs=64.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (311)
+.|+|+++||||||++++++|+.+|+||++|+|+|. +|++.|+|+|++ .++.++.++++++++++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence 679999999999999999999999999999999998 699999999998 67887766788899999987754
No 29
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.59 E-value=1.2e-14 Score=107.00 Aligned_cols=69 Identities=26% Similarity=0.381 Sum_probs=60.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc-CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhh
Q 021491 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD-GRFFMDVFHVTDLNGNKLTDESVISYIEQSLE 103 (311)
Q Consensus 35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~ 103 (311)
+++|.|+++||||||++++++|+.+|+||++|+|+|. +|+++|+|+|++++|.++.+++..+.|++.|.
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~ 70 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALE 70 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999985 79999999999988887766656666776664
No 30
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.59 E-value=1.4e-14 Score=107.40 Aligned_cols=71 Identities=31% Similarity=0.462 Sum_probs=63.4
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc-cCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (311)
+++|+++||||||++++++|+++|+||++|+|+| .+|++.|+|+|++ .++. ..++++++++++.|.++|.+
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d-~~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITD-AREL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeC-CCCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999997 6899999999998 5555 44567889999999988755
No 31
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.59 E-value=1.2e-14 Score=104.75 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=56.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHh
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSL 102 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L 102 (311)
.+|+|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|++.+|. +...+.+.++++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~--~~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG--ETAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc--chHHHHHHHHHhh
Confidence 58999999999999999999999999999999996 78999999999998876 2245666666665
No 32
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.56 E-value=3.5e-14 Score=104.79 Aligned_cols=68 Identities=26% Similarity=0.342 Sum_probs=58.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCC-CCCCCcHHHHHHHHHHhh
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLN-GNKLTDESVISYIEQSLE 103 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~-g~~~~~~~~~~~l~~~L~ 103 (311)
|.|.|+++||||||++|+++|+.+||||++|+++|.+|+++|+|+|.+++ |.++.+++..++|++.|.
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~ 69 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLD 69 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999987 777666544555555543
No 33
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.52 E-value=1.3e-13 Score=102.31 Aligned_cols=65 Identities=26% Similarity=0.370 Sum_probs=54.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHh
Q 021491 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSL 102 (311)
Q Consensus 37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L 102 (311)
.+.|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|++++|. ..+++..+.|++.|
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L 67 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYL 67 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999996 89999999999998766 33333344444444
No 34
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.45 E-value=5.2e-13 Score=111.31 Aligned_cols=151 Identities=14% Similarity=0.175 Sum_probs=120.0
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC---
Q 021491 32 CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG--- 108 (311)
Q Consensus 32 ~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r--- 108 (311)
...+.+|+++++||||+...+|+...++||||+++++...++.+..+..+. |. |+-...|+..|....++
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs----~dav~~le~~l~~l~~~~~L 74 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GS----WDAVTLLEATLPLLGAELDL 74 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eC----HHHHHHHHHHhhcccccCCe
Confidence 356799999999999999999999999999999999999888888666664 33 77788899888765541
Q ss_pred -----C----C-CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHH
Q 021491 109 -----R----S-NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQ 176 (311)
Q Consensus 109 -----r----~-~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~ 176 (311)
| + ..+...+.+.|.+.||||++.++|+.|..+|+||.+....|. .+.-...|.+.- .-+-|.. -.
T Consensus 75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa~--~~ 151 (176)
T COG2716 75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPAN--LS 151 (176)
T ss_pred EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCCc--Cc
Confidence 2 1 446677899999999999999999999999999999888886 355566777765 3344543 45
Q ss_pred HHHHHHHHHHHhcCCCC
Q 021491 177 IDRIEARLRNVLKGDND 193 (311)
Q Consensus 177 ~~~l~~~L~~~L~~~~~ 193 (311)
+..|+++|++ |.++..
T Consensus 152 i~~l~~~f~a-l~~~L~ 167 (176)
T COG2716 152 ISALRDAFEA-LCDELN 167 (176)
T ss_pred HHHHHHHHHH-HHHhhc
Confidence 6789999886 555443
No 35
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.45 E-value=2.7e-13 Score=112.96 Aligned_cols=128 Identities=19% Similarity=0.232 Sum_probs=100.6
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCC
Q 021491 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDN 192 (311)
Q Consensus 113 ~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 192 (311)
..++++|++++.||||++..|++...++||||.++|+.+.|+.+.-+..|+. . .+...+|+..|.. +..+.
T Consensus 2 ~~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg----s----~dav~~le~~l~~-l~~~~ 72 (176)
T COG2716 2 MEHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG----S----WDAVTLLEATLPL-LGAEL 72 (176)
T ss_pred CccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee----C----HHHHHHHHHHhhc-ccccC
Confidence 4567899999999999999999999999999999999999999998888875 2 3667888888764 55545
Q ss_pred CcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcCC
Q 021491 193 DIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDME 272 (311)
Q Consensus 193 ~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~g 272 (311)
++. +.+ +|... .++ ......+.++|.+.||||++.++|+.|..+|
T Consensus 73 ~L~-----v~m------~rt~~------------------~~~------~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~ 117 (176)
T COG2716 73 DLL-----VVM------KRTGA------------------HPT------PANPAPVWVYVDANDRPGIVEEFTALFDGHG 117 (176)
T ss_pred CeE-----EEE------eecCC------------------Ccc------CCCCceEEEEEEecCCccHHHHHHHHHHhcC
Confidence 543 211 12110 010 1223456899999999999999999999999
Q ss_pred eEEEEEEEEecC
Q 021491 273 YVVFHATINTAG 284 (311)
Q Consensus 273 i~I~~A~I~T~g 284 (311)
++|++....|+-
T Consensus 118 inie~L~~~~~~ 129 (176)
T COG2716 118 INIENLVSRTYP 129 (176)
T ss_pred Cchhhceeeeee
Confidence 999999988863
No 36
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.39 E-value=4.4e-12 Score=128.97 Aligned_cols=128 Identities=14% Similarity=0.138 Sum_probs=107.7
Q ss_pred EEEEEEe-CCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCcc
Q 021491 117 TALELTG-TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIR 195 (311)
Q Consensus 117 t~i~V~~-~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~ 195 (311)
..++|.. +|++|+|.+++++|+.+|++|++|++.+ +|.+...|.|.. ..|.+.+ + ..+++.+...+.++.++.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~~-~---~~~~~~~~~~~~~~~~~~ 620 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDFD-P---QEFLQAYKSGVYSELPDP 620 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCCC-h---HHHHHHHHHhhcCCCCcc
Confidence 5788888 9999999999999999999999999999 888999999998 6777653 3 567788877776654321
Q ss_pred hhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcCCeEE
Q 021491 196 SAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVV 275 (311)
Q Consensus 196 ~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I 275 (311)
. ..|+.+.+.. +++||++.||||+|+.|+++|. +|
T Consensus 621 ---------------------------~--------~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~----~~ 655 (693)
T PRK00227 621 ---------------------------A--------PGITATFWHG------NILEVRTEDRRGALGALLGVLP----DL 655 (693)
T ss_pred ---------------------------c--------CCCCceEeeC------cEEEEEeCccccHHHHHHHHhh----hh
Confidence 0 1345555542 7999999999999999999999 99
Q ss_pred EEEEEEecCCeEEEEEEEEe
Q 021491 276 FHATINTAGERAYLVINCYQ 295 (311)
Q Consensus 276 ~~A~I~T~g~~a~D~F~v~~ 295 (311)
.+|+++|.|-.+.|.||+..
T Consensus 656 ~~~~~~~~g~~~~~~~~~~~ 675 (693)
T PRK00227 656 LWITASTPGATMIVQAALKP 675 (693)
T ss_pred hhHhhcCCCcceEEEEEecC
Confidence 99999999999999999983
No 37
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.38 E-value=6.3e-12 Score=127.87 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=117.8
Q ss_pred EEEEEEe-cCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC----CC
Q 021491 36 TLVKVDS-ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG----RS 110 (311)
Q Consensus 36 t~V~V~~-~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r----r~ 110 (311)
-.|+|.. +|++|++.+++++|+.+|++|.+|++.+ +|.++..|.|.+..|.++++..+.+.++.++.+.... .|
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT 625 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence 4677777 9999999999999999999999999999 8888899999998999888888999999888776531 12
Q ss_pred CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (311)
Q Consensus 111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (311)
...-..++++|.+.||+|+|+.++++|. +|..|++.|.|..++|.|++.. + .....++..+..+|.+
T Consensus 626 ~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~---~------~~r~~~~~~~~~~~~~ 692 (693)
T PRK00227 626 ATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP---G------FDRATVERDVTRVLAG 692 (693)
T ss_pred ceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC---c------ccHHHHHHHHHHHHhc
Confidence 2222347999999999999999999999 8999999999999999999985 1 1235677777766543
No 38
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.37 E-value=6.2e-12 Score=92.22 Aligned_cols=67 Identities=30% Similarity=0.504 Sum_probs=59.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhh
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLE 103 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~ 103 (311)
++|+|+++|+||+|++++++|+.+|+||++|.++|.+++++|+|+|+++++.+. +.+..+.|++.|.
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence 689999999999999999999999999999999988889999999999888876 4456677887775
No 39
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.35 E-value=1.1e-11 Score=90.86 Aligned_cols=67 Identities=33% Similarity=0.556 Sum_probs=59.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLR 185 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (311)
+.++|.++||||+|++|+++|+++|+||++|+++|.++++.|+|+|.+ .++.++ ++++++++++.|-
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~-~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC-CCCCcC-CHHHHHHHHHHhc
Confidence 679999999999999999999999999999999999889999999998 677776 5667777777664
No 40
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.33 E-value=1.3e-11 Score=88.96 Aligned_cols=65 Identities=18% Similarity=0.320 Sum_probs=54.9
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (311)
..|.|+++||||||++++++|+.+|+||++|+|+|. +|.+.|+|+|.+ .+|.. .+.|+++|.++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d-~~~~~------~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG-WKRGE------TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec-CCccc------hHHHHHHHHHhh
Confidence 578999999999999999999999999999999976 799999999998 44532 255667766554
No 41
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.28 E-value=5.1e-11 Score=86.30 Aligned_cols=69 Identities=39% Similarity=0.590 Sum_probs=61.9
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV 187 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (311)
|.+.|.++|+||+|++|+++|+++|+||.++++.|.++.+.|+|++++ .++.+. +.+++++|++.|.++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~ 69 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEA 69 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999998889999999998 677774 457888899988765
No 42
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.18 E-value=2.8e-10 Score=82.38 Aligned_cols=68 Identities=32% Similarity=0.456 Sum_probs=59.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhh
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLET 104 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (311)
|.|.|.++|+||+|++++++|+.+|+||.++++.+.+++++|+|++.+++|.+. +.+..++|++.|..
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~~-~~~~~~~i~~~l~~ 68 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL-DPERQEALRAALGE 68 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999987789999999999888874 44566677777653
No 43
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.96 E-value=1e-08 Score=73.80 Aligned_cols=69 Identities=36% Similarity=0.636 Sum_probs=59.2
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV 187 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (311)
+.|.|.++|+||+|++|+++|+++|++|.++++.+.+++..++|++.. .++.+. ++++++.|++.|.+.
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~-~~~~~~-~~~~~~~l~~~l~~~ 69 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPERIARLEEALEDA 69 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhh
Confidence 368899999999999999999999999999999998778999999998 455553 357888888888654
No 44
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.86 E-value=3.3e-08 Score=71.07 Aligned_cols=67 Identities=42% Similarity=0.595 Sum_probs=56.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhh
Q 021491 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLET 104 (311)
Q Consensus 37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (311)
.|.|.++|+||+|++++++|+.+|++|.++.+.+.+++..+.|++..+++... +++..+.|++.|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~l~~ 68 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERIARLEEALED 68 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCcC-CHHHHHHHHHHHHh
Confidence 68899999999999999999999999999999986669999999998876653 34556667776643
No 45
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.86 E-value=2.5e-08 Score=73.74 Aligned_cols=64 Identities=23% Similarity=0.488 Sum_probs=54.8
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV 187 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (311)
..+|++.++||||+++.++++|+++|+||.+.+..+.++++.-++.|+. + ++..++|+++|.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~-~-------~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSI-P-------EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEE-S-------HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEe-C-------cccHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999987 2 35678899998874
No 46
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.65 E-value=3.4e-07 Score=67.70 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=49.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhh
Q 021491 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLET 104 (311)
Q Consensus 35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~ 104 (311)
+..|++.++||||+++.++++|+++|+||.+.+..+.+|.+.-.+.|.-+ |.-.+.|+++|..
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~ 64 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEE 64 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHH
Confidence 46899999999999999999999999999999999999998888888654 3344555555543
No 47
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.63 E-value=4.3e-07 Score=71.36 Aligned_cols=114 Identities=19% Similarity=0.209 Sum_probs=87.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCCCCCC
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNG 115 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~~~~~ 115 (311)
-+|.|+..|+||-++..+.+|.+.|+||..-.|.-.+.+-+-.+.|..+ +...+ +|.+... ....
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d~A~~----~Lee~gF----~Vr~ 68 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------DEAHS----VLEEAGF----TVRE 68 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------HHHHH----HHHHCCc----EEEe
Confidence 3689999999999999999999999999988887667666666777533 22333 4544332 1223
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEe
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD 164 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~ 164 (311)
.-++-|..+|+||-|++|+.+|..+++|+.+...++. ..++.-+|.+.+
T Consensus 69 ~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 69 TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED 118 (142)
T ss_pred eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence 4578899999999999999999999999999999986 456665555443
No 48
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.62 E-value=2.3e-07 Score=68.79 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=54.9
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCc
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDI 194 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~ 194 (311)
++|++.|+||||++++|++.|+++|+||.+++.++.++++.-...+.. + + ...+.|++.|.+ +.++.++
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~-~---~----~~~~~l~~~l~~-~~~~~~l 70 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG-S---W----DAIAKLEAALPG-LARRLDL 70 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe-c---c----ccHHHHHHHHHH-HHHHcCC
Confidence 689999999999999999999999999999999999888876666664 2 1 134678888876 4443443
No 49
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.58 E-value=2.3e-07 Score=64.45 Aligned_cols=65 Identities=17% Similarity=0.305 Sum_probs=54.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCC-CCCcHHHHHHHHH
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGN-KLTDESVISYIEQ 100 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~-~~~~~~~~~~l~~ 100 (311)
++|+|.|||+.||-.++|+++.+.|++|..++++|++.+++-+|+|...... ++....+..+|.+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~ 66 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMS 66 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHh
Confidence 4799999999999999999999999999999999999999999999965433 2333345666654
No 50
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.57 E-value=2.9e-07 Score=67.79 Aligned_cols=63 Identities=24% Similarity=0.262 Sum_probs=52.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV 187 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (311)
+++|.++||||++++++++|+++|+||.+.+..+.++.+.-.|.+.- +.+ ...+.|++.|...
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~-p~~------~~~~~l~~~l~~l 63 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQI-PDS------ADSEALLKDLLFK 63 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEc-CCC------CCHHHHHHHHHHH
Confidence 47899999999999999999999999999999999988888888876 222 1346788888763
No 51
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.55 E-value=6.1e-07 Score=66.51 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=42.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEe
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTD 83 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~ 83 (311)
..|++.||||||+.+++++.|+++|+||.+.+.+..+|.+.-.+.+..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~ 49 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG 49 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe
Confidence 678999999999999999999999999999999998887765555553
No 52
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.51 E-value=1.3e-06 Score=61.84 Aligned_cols=61 Identities=20% Similarity=0.329 Sum_probs=47.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCc--eEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG--RIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~--~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
+.|.|.++||||+|++++++|+++|+||..+.+.+.++ ....++...+ ....+.+.+.|++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~ 63 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA 63 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence 57899999999999999999999999999999999865 3343443433 2444666666665
No 53
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.49 E-value=1.1e-06 Score=62.29 Aligned_cols=47 Identities=28% Similarity=0.270 Sum_probs=39.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCC--EEEEEEEEE
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGR--FFMDVFHVT 82 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g--~~~d~f~v~ 82 (311)
+.|.|.++||||++++++.+|+++|+||..+.+.+.++ ..+..+...
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~ 49 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV 49 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC
Confidence 46899999999999999999999999999999997543 445444444
No 54
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.41 E-value=1.6e-06 Score=63.78 Aligned_cols=62 Identities=15% Similarity=0.060 Sum_probs=49.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (311)
Q Consensus 37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (311)
.|+|.++||||+.++++++|+++|+||.+.+..+.++.+.-.+.+.-+.+. ....+++.|+.
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~--~~~~l~~~l~~ 62 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSA--DSEALLKDLLF 62 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCC--CHHHHHHHHHH
Confidence 378999999999999999999999999999988878887777888765542 22445555554
No 55
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.28 E-value=3.5e-06 Score=63.94 Aligned_cols=65 Identities=20% Similarity=0.392 Sum_probs=53.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV 187 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (311)
.++++.|+||||++++|++.|+++|+||.+.+..+.++.+.-.+.+.. + +.. ...+.|++.|...
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~-~-~~~----~~~~~L~~~l~~l 66 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDI-S-ESN----LDFAELQEELEEL 66 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEe-C-CCC----CCHHHHHHHHHHH
Confidence 578999999999999999999999999999999998888777777775 2 101 2246788888763
No 56
>PRK00194 hypothetical protein; Validated
Probab=98.19 E-value=6.1e-06 Score=62.77 Aligned_cols=70 Identities=20% Similarity=0.365 Sum_probs=53.6
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCC
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDN 192 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 192 (311)
.++++|.++||||+++++++.|+++|+||.+.+..+.++.+.-.+.+.. + +.+. ..+.|++.|.+ +.+..
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~-~-~~~~----~~~~l~~~l~~-l~~~~ 72 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDI-S-ESKK----DFAELKEELEE-LGKEL 72 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEe-c-CCCC----CHHHHHHHHHH-HHHHc
Confidence 6789999999999999999999999999999999988887776666654 2 1121 23677777776 44433
No 57
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.18 E-value=1.1e-05 Score=59.05 Aligned_cols=63 Identities=22% Similarity=0.290 Sum_probs=44.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
+|+|.|+||||++++|++.|+++|+||.+.+..+. ++.+.-.+.+.. +.+ . -..+.|++.|..
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~-~~~-~----~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFEL-EGF-D----LSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEe-CCC-C----CCHHHHHHHHHH
Confidence 47899999999999999999999999999999974 333332333332 100 0 134778888776
No 58
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.16 E-value=1.4e-05 Score=59.23 Aligned_cols=62 Identities=21% Similarity=0.311 Sum_probs=47.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC------ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN------GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~------~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
+++|.++|+||++++|++.|+++|+||.+.+..+.+ +.+.-.+.+.. +.+ .....|++.|..
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~-p~~------~~~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLAL-PAG------TDLDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEec-CCC------CCHHHHHHHHHH
Confidence 478999999999999999999999999999999876 44444555554 211 124678888776
No 59
>PRK00194 hypothetical protein; Validated
Probab=98.14 E-value=1.2e-05 Score=61.19 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=49.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (311)
Q Consensus 35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (311)
...|++.|+|+||++++++++|+++|+||.+.+..+.++.+.-.+.+.-+. .+.+.+.+.+.|+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~l~~ 67 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE-SKKDFAELKEELEE 67 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC-CCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999988777776655654332 12222345555554
No 60
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.13 E-value=1e-05 Score=61.30 Aligned_cols=64 Identities=19% Similarity=0.211 Sum_probs=49.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (311)
..|++.|+|+||++++++++|+++|+||.+.+.++.++.+.-.+.+.-+. ...+.+.+.+.|+.
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~-~~~~~~~L~~~l~~ 65 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE-SNLDFAELQEELEE 65 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC-CCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999998777776666776442 11222455555554
No 61
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=98.12 E-value=2.1e-05 Score=58.32 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=46.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcC------CEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDG------RFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (311)
Q Consensus 37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~------g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (311)
.|+|.|+|+||+.++|+..|+++|+||.+.+..+.+ +.+.-.+.+.-+.+ .+...+.+.|+.
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~--~~~~~l~~~l~~ 68 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAG--TDLDALREELEE 68 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCC--CCHHHHHHHHHH
Confidence 378999999999999999999999999999998854 55555566665432 223455555554
No 62
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.10 E-value=2.8e-05 Score=56.88 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=43.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (311)
Q Consensus 37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (311)
.|+|.|+||||+++++++.|+++|+||.+.+.++ .++.+.-.+.+.-+.+ ......+.+.++.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~l~~~l~~ 65 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGF-DLSREALEAAFAP 65 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCC-CCCHHHHHHHHHH
Confidence 3789999999999999999999999999999986 3344333344433321 1222445555554
No 63
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.82 E-value=0.00074 Score=62.28 Aligned_cols=110 Identities=12% Similarity=0.068 Sum_probs=68.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc--CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC----CCC
Q 021491 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD--GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY----GRS 110 (311)
Q Consensus 37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~--~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~----rr~ 110 (311)
.|+|.|+||||+.+.+++.|+++|+||.+.+.+.. +|++.-.+.+.-+ +...+.+.+++.++.++..... .+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~~~l~i~l~~ 80 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEKFEMTWELIL 80 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHhCCEEEEec
Confidence 58999999999999999999999999999999974 4777656666543 2223335566666653333321 011
Q ss_pred CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEE
Q 021491 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKV 149 (311)
Q Consensus 111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i 149 (311)
. .....|-|.+.-+-.=|..|......-.++..=+-+
T Consensus 81 ~--~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~v 117 (280)
T TIGR00655 81 A--DKLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALV 117 (280)
T ss_pred C--CCCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEE
Confidence 1 112234444444444567777776666555443333
No 64
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.81 E-value=0.00025 Score=52.52 Aligned_cols=64 Identities=22% Similarity=0.363 Sum_probs=47.6
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLR 185 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (311)
-.+.|.|.+.||||+|++|+.++++.|+||.+.++.+. ++.+.-.|.+.- . +.++++.+-+.|.
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-~------d~~~L~~ii~~L~ 70 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-K------DLEHLNQIIRKLR 70 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-S------SHHHHHHHHHHHC
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-C------CHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999985 567777777765 1 2455555555543
No 65
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.81 E-value=0.0001 Score=68.26 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=55.3
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc--cCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT--HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD 191 (311)
Q Consensus 114 ~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (311)
...++|+|.|+||||+++.|+++|+++|+||.+.+..+ .+|.+.-.+.+.. +..+ ...+.|++.|.+ +.++
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~----~~~~~L~~~L~~-l~~~ 76 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLI----FNLETLRADFAA-LAEE 76 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCC----CCHHHHHHHHHH-HHHH
Confidence 35688999999999999999999999999999999999 7776555555543 1112 235788888876 4443
Q ss_pred CC
Q 021491 192 ND 193 (311)
Q Consensus 192 ~~ 193 (311)
..
T Consensus 77 l~ 78 (286)
T PRK06027 77 FE 78 (286)
T ss_pred hC
Confidence 43
No 66
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.80 E-value=0.00055 Score=63.41 Aligned_cols=66 Identities=8% Similarity=0.074 Sum_probs=45.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE--EcCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS--SDGRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (311)
Q Consensus 35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~--t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (311)
...|+|.|+||||+.+++++.|+++|+||++.+.+ +..|.+.-.+.+.+......+...+.+.++.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~ 76 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQP 76 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 46899999999999999999999999999999998 3334443333333221122333455555554
No 67
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.79 E-value=0.0012 Score=52.18 Aligned_cols=113 Identities=13% Similarity=0.094 Sum_probs=79.2
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCcchh
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRSA 197 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~~ 197 (311)
+|+|...++||=|+..+..|.++|+||.-..|.-.++.-.--..|.. ++ .-.+. |....
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~---------~d---~A~~~----Lee~g----- 63 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR---------PD---EAHSV----LEEAG----- 63 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC---------hH---HHHHH----HHHCC-----
Confidence 68899999999999999999999999998888877664444444433 11 11122 22211
Q ss_pred hhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcCCeEEEE
Q 021491 198 KMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFH 277 (311)
Q Consensus 198 ~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~ 277 (311)
| . |.+ ..++-|...|+||=|.+|+.+|.+.++|+.+
T Consensus 64 ------------------------F-----------~--Vr~-------~dVlaVEmeD~PG~l~~I~~vl~d~diNldY 99 (142)
T COG4747 64 ------------------------F-----------T--VRE-------TDVLAVEMEDVPGGLSRIAEVLGDADINLDY 99 (142)
T ss_pred ------------------------c-----------E--EEe-------eeEEEEEecCCCCcHHHHHHHHhhcCcCcee
Confidence 1 0 111 2278889999999999999999999999998
Q ss_pred EEEEe-cCCeEEEEEEEEe
Q 021491 278 ATINT-AGERAYLVINCYQ 295 (311)
Q Consensus 278 A~I~T-~g~~a~D~F~v~~ 295 (311)
+-.-+ ..++|.=+|-+.|
T Consensus 100 iYAFv~ek~KAlli~r~ed 118 (142)
T COG4747 100 IYAFVTEKQKALLIVRVED 118 (142)
T ss_pred eeeeeecCceEEEEEEhhH
Confidence 87654 4566665554443
No 68
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.73 E-value=5.3e-05 Score=57.06 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=53.1
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (311)
..+|+|.++||||+.+.++++|+++|+||++-.-.-..|.+.-.+.|..+ ... .....++..|....
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~--~~~----~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS--KEV----VDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC--hHh----ccHHHHHHHHHHHH
Confidence 57899999999999999999999999999998887788988888888762 111 23356777666543
No 69
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.71 E-value=0.00016 Score=50.52 Aligned_cols=67 Identities=13% Similarity=0.241 Sum_probs=56.5
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV 187 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (311)
++|+|.++|+.||=.++++++.+.|++|..+.++|-|.=..-+|+|.. . ..++ +-++..|++.|.++
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~-~-~~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVP-R-PPSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEec-C-CCCC--cccHHHHHHHHHhc
Confidence 479999999999999999999999999999999999888888899986 3 2233 35778888887753
No 70
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.70 E-value=0.00023 Score=52.68 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=40.0
Q ss_pred eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec--CCeEEEEEEEEec
Q 021491 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLVINCYQF 296 (311)
Q Consensus 247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~--g~~a~D~F~v~~~ 296 (311)
.+.+.|.+.||||+|++|++++++.|+||.++.+.+. ++.+.=.|.|.=.
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~ 57 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK 57 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC
Confidence 4579999999999999999999999999999999995 5666666665543
No 71
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.63 E-value=0.00058 Score=49.50 Aligned_cols=61 Identities=18% Similarity=0.228 Sum_probs=47.1
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
+.|.+.||||+|++|+.++++.|.||.+....+. .+.+...|.+.- . +.++++.+...|.+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-~------~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-P------SEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-C------CHHHHHHHHHHHhc
Confidence 6789999999999999999999999998888765 466666666664 1 24566666666553
No 72
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.62 E-value=0.00029 Score=65.01 Aligned_cols=69 Identities=16% Similarity=0.247 Sum_probs=51.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCC
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDN 192 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~ 192 (311)
+|+|.|+||||+++.|++.|+++|+||.+.+.+.. ++++.-.+.+.. + +... ..+.|++.|.+++..+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~-~-~~~~----~~~~l~~~l~~~~~~~~ 72 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQL-E-GFRL----EESSLLAAFKSALAEKF 72 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEe-C-CCCC----CHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999985 477776666665 2 2122 23667777776344333
No 73
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.58 E-value=0.00033 Score=64.90 Aligned_cols=67 Identities=19% Similarity=0.319 Sum_probs=48.4
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEE--ccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW--THNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~--T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
..++|+|.|+||||+++.|++.|+++|+||.+.+.+ +..+.+...+.+.. .....+ ..+.|+++|.+
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~-~~~~~~----~~~~l~~~l~~ 76 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHA-QSAEAA----SVDTFRQEFQP 76 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEc-CCCCCC----CHHHHHHHHHH
Confidence 356899999999999999999999999999999997 44454444444443 111122 24677777776
No 74
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.53 E-value=0.00057 Score=63.24 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=49.9
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
..++++|.|+||||+++++++.|+++|+||.+.+..+. ++.+.-.+.+.. +.+ ...+.|++.|.+
T Consensus 6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~-p~~------~~~~~L~~~L~~ 72 (286)
T PRK13011 6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHS-EEG------LDEDALRAGFAP 72 (286)
T ss_pred ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEec-CCC------CCHHHHHHHHHH
Confidence 35789999999999999999999999999999999854 455555555554 212 124678888776
No 75
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.52 E-value=0.0034 Score=58.13 Aligned_cols=49 Identities=14% Similarity=0.087 Sum_probs=42.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEE
Q 021491 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVT 82 (311)
Q Consensus 34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~ 82 (311)
....|+|.|+||||+.+.++++|+++|+||.+.+.++ .+|.+.-.+.+.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~ 55 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFE 55 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEE
Confidence 3578999999999999999999999999999999998 777655455554
No 76
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.50 E-value=0.00013 Score=55.01 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=47.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHh
Q 021491 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSL 102 (311)
Q Consensus 35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L 102 (311)
...|+|.++||||+.+.++++|+++|+||++-...--+|++.-.+.|.-+. +..+-..++++++...
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~-~~~d~~~lr~~l~~~~ 69 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISK-EVVDFAALRDELAAEG 69 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCCh-HhccHHHHHHHHHHHH
Confidence 357999999999999999999999999999877666777766555554321 2122233445455443
No 77
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.47 E-value=0.0043 Score=57.43 Aligned_cols=64 Identities=9% Similarity=0.095 Sum_probs=48.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (311)
Q Consensus 35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (311)
...|+|.|+||||+.++++++|+++|+||.+.+.++ .++.+.-.+.+..+.+. +...+++.|+.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~--~~~~L~~~L~~ 72 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL--DEDALRAGFAP 72 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC--CHHHHHHHHHH
Confidence 467999999999999999999999999999999985 44555545666544432 22455665654
No 78
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.47 E-value=0.00066 Score=61.10 Aligned_cols=66 Identities=14% Similarity=0.157 Sum_probs=48.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (311)
Q Consensus 34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (311)
....+++.|||+||+.++|++.|+.+||||.+++.++ ..|++.-...... ++.+.+.+.+++.+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~-~~~~~~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG-EGGPLDREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec-CCCcccHHHHHHHHHH
Confidence 4578999999999999999999999999999999997 2466654444432 3343444455555554
No 79
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.38 E-value=0.0017 Score=47.01 Aligned_cols=46 Identities=11% Similarity=0.150 Sum_probs=39.2
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEe
Q 021491 38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTD 83 (311)
Q Consensus 38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~ 83 (311)
+.|.++||||+|++|+.+++..|.||.+....+ .++.+...|.+.-
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev 48 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA 48 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc
Confidence 678999999999999999999999999888876 4577776677754
No 80
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.36 E-value=0.0023 Score=45.45 Aligned_cols=61 Identities=25% Similarity=0.387 Sum_probs=42.2
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-----CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-----NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-----~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
+.|..+|+||+|++|+.+|++.|+||.+...... .+...-.|.+.. . +.++++.+.+.|.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-~------~~~~l~~l~~~l~~ 66 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-R------GAEHIEEIIAALRE 66 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-C------CHHHHHHHHHHHHH
Confidence 3578899999999999999999999998876643 244444444443 1 23455566666543
No 81
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.36 E-value=0.0014 Score=47.77 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=32.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH 152 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~ 152 (311)
.+.|.+.||+|+|++|+.++++.|+||.+.++.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 47899999999999999999999999999999875
No 82
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.27 E-value=0.0021 Score=45.78 Aligned_cols=46 Identities=11% Similarity=0.137 Sum_probs=38.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~ 164 (311)
..+.|..+|+||.|++++..|+++|+||.+..++..++. .++.+..
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 367889999999999999999999999999998776554 4555543
No 83
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.26 E-value=0.0029 Score=45.13 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=43.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-c-eEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-G-RIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~-~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
+.+.|..+|+||.|+++++.|+++|+||.+....... + ...-.+.+.. ++..+++.+.|.+
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~---------~~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKT---------QEDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECC---------HHHHHHHHHHHHH
Confidence 4688999999999999999999999999988777652 2 3333444443 1344566666554
No 84
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.25 E-value=0.0011 Score=45.41 Aligned_cols=46 Identities=17% Similarity=0.155 Sum_probs=39.2
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEe
Q 021491 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD 164 (311)
Q Consensus 119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~ 164 (311)
+.|..+|+||.|++++..|.++|+||.+..+...+ +.+.-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 45788999999999999999999999999988765 66776776654
No 85
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.00084 Score=60.45 Aligned_cols=66 Identities=18% Similarity=0.420 Sum_probs=47.9
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
..+++++.|+|+||+++.|++.|+++|+||.++.-++- +|++..--.+.. .+.+. ..+.|+..+..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~--~~~~~----~~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG--EGGPL----DREALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec--CCCcc----cHHHHHHHHHH
Confidence 56899999999999999999999999999999999953 344332222222 23332 34667777766
No 86
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.19 E-value=0.0029 Score=54.19 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=47.1
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (311)
..+.|.+.|+||+|++|++.|+++|+||.+...... .+...-++.+.. ++..+++|.+.|.+..
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999763 344433343332 1233677777777643
No 87
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.18 E-value=0.0011 Score=45.49 Aligned_cols=46 Identities=15% Similarity=0.124 Sum_probs=38.9
Q ss_pred EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC-CeEEEEEEEEe
Q 021491 250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLVINCYQ 295 (311)
Q Consensus 250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g-~~a~D~F~v~~ 295 (311)
+++..+|+||.|.+++..|.+.|+||.+..+...+ +++.=.|-+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 35789999999999999999999999999987765 77777776554
No 88
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.17 E-value=0.0036 Score=46.15 Aligned_cols=62 Identities=6% Similarity=0.086 Sum_probs=44.8
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceE-EEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRI-ASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~-~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
..+.+...|+||.|++++++|+..|.||.+..+.-. .... .-++.+.. ++..+++|.+.|.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~--------~~~~i~qi~kQL~K 66 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC--------TENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC--------CHHHHHHHHHHHhC
Confidence 468999999999999999999999999999888743 3333 33333332 23556667666654
No 89
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.13 E-value=0.0046 Score=44.83 Aligned_cols=62 Identities=26% Similarity=0.371 Sum_probs=45.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChH-HHHHHHHHHHH
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQ-QIDRIEARLRN 186 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~-~~~~l~~~L~~ 186 (311)
.+.|.+.|+||+|++|++.|+++|+||......+. ++.+.-.|.+.. . +.+ +++.|-+.|.+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v-~------~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT-S------TMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc-C------chHHHHHHHHHHHhc
Confidence 57899999999999999999999999999877654 355666666654 1 123 55666666553
No 90
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.12 E-value=0.0035 Score=46.95 Aligned_cols=63 Identities=21% Similarity=0.243 Sum_probs=46.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC--ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
..+.+...|+||.|++|++.|+..|+||.+..+.... +...-++.+.. | ++..++++.+.|.+
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~K 67 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhC
Confidence 3689999999999999999999999999999998653 33333444431 2 24566777777664
No 91
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.07 E-value=0.0022 Score=45.57 Aligned_cols=45 Identities=13% Similarity=0.084 Sum_probs=37.5
Q ss_pred EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEe
Q 021491 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQ 295 (311)
Q Consensus 249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~ 295 (311)
.+.|..+|+||.|++|+.+|++.|+||.+.-+...++. -++.+..
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 57788999999999999999999999999998776664 4454444
No 92
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=97.06 E-value=0.0044 Score=47.61 Aligned_cols=64 Identities=17% Similarity=0.266 Sum_probs=45.9
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
....|++...|+||+|++|++.|+..|.||.+....-.+ ....-+..+.. + +..++++.+.|.+
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~---~-----~~~i~Qi~kQL~K 71 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN---D-----DQRLEQMISQIEK 71 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc---C-----chHHHHHHHHHhC
Confidence 456799999999999999999999999999999887543 22222222221 1 2466777777665
No 93
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.03 E-value=0.0018 Score=47.20 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=32.8
Q ss_pred EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec
Q 021491 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA 283 (311)
Q Consensus 249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~ 283 (311)
.++|.+.||+|+|++|+.++++.|+||.+..+.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 37899999999999999999999999999999875
No 94
>PRK07431 aspartate kinase; Provisional
Probab=97.03 E-value=0.16 Score=51.72 Aligned_cols=183 Identities=14% Similarity=0.119 Sum_probs=114.0
Q ss_pred CCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC-
Q 021491 33 PTATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG- 108 (311)
Q Consensus 33 ~~~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r- 108 (311)
.+...|.|.+. +.||+.+++..+|++.|++|.... .++..+ .|.|...+ .++..+.|++.+......
T Consensus 346 ~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~---sSe~~I-s~vv~~~d-----~~~av~~Lh~~f~~~~~~~ 416 (587)
T PRK07431 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS---TSEVKV-SCVIDAED-----GDKALRAVCEAFELEDSQI 416 (587)
T ss_pred CCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE---cCCCEE-EEEEcHHH-----HHHHHHHHHHHhccCCccc
Confidence 35677888875 799999999999999999997544 333333 35554311 135667777776443221
Q ss_pred -------C---C-----CCCCCeEEEEEE-eCCcccHHHHHHHHHHhCCCeEEEEEEEc-cC--ceEEEEEEEEecCCCC
Q 021491 109 -------R---S-----NSFNGLTALELT-GTDRVGLLSEVFAVLADLQCSVVEAKVWT-HN--GRIASLIYVKDCNSGS 169 (311)
Q Consensus 109 -------r---~-----~~~~~~t~i~V~-~~DrpGLL~~I~~~L~~~glnI~~A~i~T-~~--~~~~d~F~V~~~~~g~ 169 (311)
+ + ....+...|++. .++.+|+++++.+.|+++|++|..-.... .+ |...-.|.+..
T Consensus 417 ~~~~~~~~~~~~~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~----- 491 (587)
T PRK07431 417 EINPTASGQDEPEVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK----- 491 (587)
T ss_pred ccCccccCCCCCcEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence 0 0 223345566665 46889999999999999999998764432 12 22333344432
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeE
Q 021491 170 PIEDSQQIDRIEARLRNVLKGDNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSV 249 (311)
Q Consensus 170 ~~~~~~~~~~l~~~L~~~L~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tv 249 (311)
..+....+.+.+ +..+.. +..+.+ ..+.+.
T Consensus 492 -----~~~~~~~~~l~~-l~~~~~----------------------------------------~~~i~~----~~~va~ 521 (587)
T PRK07431 492 -----EDREAAQKVLRE-LAKQLP----------------------------------------GAEVED----GPAIAK 521 (587)
T ss_pred -----HHHHHHHHHHHH-HHHhcC----------------------------------------CceEEE----eCCeEE
Confidence 222333333332 221111 011111 124667
Q ss_pred EEEEeC---CccchHHHHHHHhhcCCeEEEEEE
Q 021491 250 VNVQCK---DRTKLLFDVVCTLTDMEYVVFHAT 279 (311)
Q Consensus 250 l~v~~~---DRpGLL~~I~~~l~~~gi~I~~A~ 279 (311)
+.|.+. .+||++.++.++|++.||+|....
T Consensus 522 VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 522 VSIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 888875 889999999999999999997665
No 95
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.01 E-value=0.0059 Score=51.45 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=49.3
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC--ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (311)
.+++|...|+||.|++|++.|+++|+||.+..+...+ +...-++.+.. ++..+++|.+.|.+..
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCc
Confidence 3689999999999999999999999999998887654 44444555542 2466788888887643
No 96
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.01 E-value=0.0033 Score=44.59 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=35.9
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc-----CCEEEEEEEEE
Q 021491 38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD-----GRFFMDVFHVT 82 (311)
Q Consensus 38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~-----~g~~~d~f~v~ 82 (311)
+.|.++|+||+|++++.+|+.+|+||.+...... .+.....|.+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~ 50 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLE 50 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEE
Confidence 3578899999999999999999999998877642 36665555554
No 97
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.95 E-value=0.0061 Score=42.83 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=44.4
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc--CCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491 38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD--GRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (311)
Q Consensus 38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~--~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (311)
+.|.++|+||++++++.+|+++|+||.+..+... ++...-.|.+.++ ....+.+.|++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~-----~~~~l~~~l~~ 61 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP-----VPEEVLEELKA 61 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC-----CCHHHHHHHHc
Confidence 5788999999999999999999999999998864 3777766777321 12455555553
No 98
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.93 E-value=0.0024 Score=44.96 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=38.1
Q ss_pred EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC--CeEEEEEEE
Q 021491 250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG--ERAYLVINC 293 (311)
Q Consensus 250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g--~~a~D~F~v 293 (311)
+.|.+.|+||+|.+|+++|+++|++|.+..+...+ +.+.=.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 57889999999999999999999999999998865 566666666
No 99
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.90 E-value=0.0087 Score=50.62 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=49.0
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC--ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (311)
..++|...|+||.|++|++.|+.+|+||.+..+.... +...-++.+.. ++..++++...|.+..
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLi 68 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLI 68 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhccc
Confidence 4689999999999999999999999999998876543 44555555543 2466778888877643
No 100
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.86 E-value=0.0053 Score=43.33 Aligned_cols=35 Identities=9% Similarity=0.152 Sum_probs=32.5
Q ss_pred EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec
Q 021491 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA 283 (311)
Q Consensus 249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~ 283 (311)
.+.+.+.|+||+|.+|+.+|+++|++|.+....+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPT 36 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeec
Confidence 47889999999999999999999999999998875
No 101
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.84 E-value=0.007 Score=44.64 Aligned_cols=61 Identities=18% Similarity=0.238 Sum_probs=45.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-C-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-N-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
..+++...|+||.|+++++.|...|.||.+..+... + +...-++.+.+ +..+++|.+.|.+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---------~~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---------ERPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---------CchHHHHHHHHhc
Confidence 578999999999999999999999999999999864 3 43444444422 2345667666654
No 102
>PRK07431 aspartate kinase; Provisional
Probab=96.81 E-value=0.097 Score=53.32 Aligned_cols=191 Identities=14% Similarity=0.157 Sum_probs=110.8
Q ss_pred ecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC-CCCCCCCeEEE
Q 021491 42 SARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG-RSNSFNGLTAL 119 (311)
Q Consensus 42 ~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r-r~~~~~~~t~i 119 (311)
.++.+|+++++...|+++|+||..-.... ..+..--.|.+...+- ....+.+++ +...... .-....+...|
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~~~~~i~~~~~~a~I 351 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPALGGAEVLVETNVAKL 351 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHcCCCcEEEeCCeEEE
Confidence 57889999999999999999999765543 3333333577753211 112222332 2221110 00123467889
Q ss_pred EEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCcch
Q 021491 120 ELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRS 196 (311)
Q Consensus 120 ~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~ 196 (311)
.|.+. +++|+++++.++|++.|++|.... +. + ..-.|.|.. +..++.-+.|++.+..+..-.
T Consensus 352 svvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sS-e-~~Is~vv~~----------~d~~~av~~Lh~~f~~~~~~~- 416 (587)
T PRK07431 352 SISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TS-E-VKVSCVIDA----------EDGDKALRAVCEAFELEDSQI- 416 (587)
T ss_pred EEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cC-C-CEEEEEEcH----------HHHHHHHHHHHHHhccCCccc-
Confidence 99985 799999999999999999996554 22 1 222344543 233445555665553221100
Q ss_pred hhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEE-eCCccchHHHHHHHhhcCCeEE
Q 021491 197 AKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQ-CKDRTKLLFDVVCTLTDMEYVV 275 (311)
Q Consensus 197 ~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~-~~DRpGLL~~I~~~l~~~gi~I 275 (311)
+ +. +.+..+ +. ..-+-|. ...+...+.|. .++.||++++|...|+++|++|
T Consensus 417 --~-~~------~~~~~~--------~~-------~~v~gIa----~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~i 468 (587)
T PRK07431 417 --E-IN------PTASGQ--------DE-------PEVRGVA----LDRNQAQLAIRNVPDRPGMAASIFGALAEANISV 468 (587)
T ss_pred --c-cC------ccccCC--------CC-------CcEEEEE----ccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeE
Confidence 0 10 000000 00 0112222 22344455553 5788999999999999999999
Q ss_pred EEEEEE
Q 021491 276 FHATIN 281 (311)
Q Consensus 276 ~~A~I~ 281 (311)
.....+
T Consensus 469 d~i~~~ 474 (587)
T PRK07431 469 DMIVQS 474 (587)
T ss_pred EEEEec
Confidence 988553
No 103
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.81 E-value=0.012 Score=42.30 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=35.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-C-ceEEEEEEE
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-N-GRIASLIYV 162 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~-~~~~d~F~V 162 (311)
.+.|.+.|+||+|+++++.|+++|+||......+. + +.+.-.+.+
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~ 48 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT 48 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence 47889999999999999999999999999887654 2 444433333
No 104
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.80 E-value=0.011 Score=41.80 Aligned_cols=46 Identities=17% Similarity=0.373 Sum_probs=36.6
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEE
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVK 163 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~ 163 (311)
.+.+.++|+||.|++++..|+++|+||.+....+. ++.+.-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~ 48 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE 48 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence 57889999999999999999999999998888765 34444344443
No 105
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.79 E-value=0.016 Score=40.83 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=36.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-C-ceEEEEEEEE
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-N-GRIASLIYVK 163 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~-~~~~d~F~V~ 163 (311)
.+.+.+.|+||+|++|+..|+++|++|.+....+. + +.+.-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 47788999999999999999999999999988775 3 4444444443
No 106
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.72 E-value=0.0058 Score=43.59 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=37.3
Q ss_pred EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec--CCeEEEEEEEE
Q 021491 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLVINCY 294 (311)
Q Consensus 249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~--g~~a~D~F~v~ 294 (311)
.+.+..+|+||.|++++++|+++|++|.+...... +....-.|.++
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 57889999999999999999999999998877665 22444456665
No 107
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.71 E-value=0.0082 Score=43.45 Aligned_cols=47 Identities=6% Similarity=-0.011 Sum_probs=38.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEe
Q 021491 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTD 83 (311)
Q Consensus 37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~ 83 (311)
.+.|.++|+||++++++.+|+.+|.||......+ .+|.+--.|.+..
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v 49 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT 49 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc
Confidence 4789999999999999999999999999887765 3466665677753
No 108
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.69 E-value=0.014 Score=41.32 Aligned_cols=46 Identities=9% Similarity=0.016 Sum_probs=37.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc-CCEEEEEEEEE
Q 021491 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD-GRFFMDVFHVT 82 (311)
Q Consensus 37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~-~g~~~d~f~v~ 82 (311)
++.+.++|+||.+++++..|+++++||.+....+. ++...-.+.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~ 48 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE 48 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence 57889999999999999999999999998887764 45554445554
No 109
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=96.67 E-value=0.012 Score=44.10 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=36.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-Ec-CCEEEEEEEE
Q 021491 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SD-GRFFMDVFHV 81 (311)
Q Consensus 37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~-t~-~g~~~d~f~v 81 (311)
.+.++..|+||.++++++.|+..|+||.+-.+. |. .|..--++.+
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv 50 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQV 50 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEE
Confidence 589999999999999999999999999999987 43 3544433444
No 110
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.67 E-value=0.015 Score=40.86 Aligned_cols=58 Identities=26% Similarity=0.314 Sum_probs=42.0
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-c-CCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491 38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-D-GRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (311)
Q Consensus 38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (311)
+.+.++|+||.+++++..|+++|+||....... . ++...-.+.+.+. ....+.+.|++
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~-----~~~~~i~~l~~ 61 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP-----IDEEVIEEIKK 61 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC-----CCHHHHHHHHc
Confidence 577899999999999999999999999888765 2 4555544555432 22455565553
No 111
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.65 E-value=0.24 Score=41.93 Aligned_cols=103 Identities=12% Similarity=0.164 Sum_probs=64.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-Ec-CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC-----
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SD-GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG----- 108 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~-t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r----- 108 (311)
..++|..+|+||.|+++++.|+..|+||.+-.+. +. .|...-++.+.. . ++..+.|.+-|......
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~---~----~~~i~qi~kQl~KLidV~~V~~ 75 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG---D----EQVIEQITKQLNKLIDVLKVVD 75 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC---C----HHHHHHHHHHHhccccEEEEEe
Confidence 3688999999999999999999999999998886 43 566665666642 2 22334444434332210
Q ss_pred -C--CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEE
Q 021491 109 -R--SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEA 147 (311)
Q Consensus 109 -r--~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A 147 (311)
. +.-......+.|.+... --.++.......+.+|.+.
T Consensus 76 ~~~~~~v~rEl~LiKv~~~~~--~r~~i~~i~~~f~a~ivdv 115 (161)
T PRK11895 76 LTEEAHVERELALVKVRASGE--NRAEILRLADIFRAKIVDV 115 (161)
T ss_pred cCCcchhheEEEEEEEECCcc--cHHHHHHHHHHhCCEEEEe
Confidence 0 11233455667766431 1346666666667666655
No 112
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.65 E-value=0.0075 Score=44.58 Aligned_cols=49 Identities=8% Similarity=-0.008 Sum_probs=38.3
Q ss_pred eEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCC-eEEEEEEEEec
Q 021491 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGE-RAYLVINCYQF 296 (311)
Q Consensus 248 tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~-~a~D~F~v~~~ 296 (311)
+.+.+..+|+||.|++|...|+++|+||.+......++ ...=.|||...
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~ 51 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFE 51 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEE
Confidence 35677889999999999999999999999998776543 34445666544
No 113
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.63 E-value=0.0098 Score=45.70 Aligned_cols=37 Identities=3% Similarity=0.129 Sum_probs=33.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE
Q 021491 33 PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS 69 (311)
Q Consensus 33 ~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~ 69 (311)
.+...+.++..|+||+++++++.|+..|+||.+-.+.
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg 42 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCL 42 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEe
Confidence 3446799999999999999999999999999998886
No 114
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=96.59 E-value=0.0098 Score=43.83 Aligned_cols=46 Identities=9% Similarity=0.061 Sum_probs=36.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-Ec-CCEEEEEEEE
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SD-GRFFMDVFHV 81 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~-t~-~g~~~d~f~v 81 (311)
..+.+...|+||.+++++++|+..|+||.+-.+. |. .|..--++.+
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~ 50 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTA 50 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEE
Confidence 3589999999999999999999999999988886 43 3544433443
No 115
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.57 E-value=0.0029 Score=44.96 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=42.2
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHH
Q 021491 38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIE 99 (311)
Q Consensus 38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~ 99 (311)
+++.+.|+||++++++.+|++.|+||......+.+|.+.-.|.+..+ ..+++.++|+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~-----~l~~li~~l~ 58 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE-----VSEELLEALR 58 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC-----CCHHHHHHHH
Confidence 67899999999999999999999999877655555777655655432 2245555555
No 116
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.53 E-value=0.01 Score=41.37 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=35.7
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc--CCEEEEEEEE
Q 021491 38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD--GRFFMDVFHV 81 (311)
Q Consensus 38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~--~g~~~d~f~v 81 (311)
+.|..+|+||-+++++.+|+++|+||.+...+.. .+...-.|.+
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 6788999999999999999999999998877643 3555544555
No 117
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.50 E-value=0.0082 Score=43.18 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=32.1
Q ss_pred EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec
Q 021491 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA 283 (311)
Q Consensus 249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~ 283 (311)
.+.|.+.|+||+|.+|++.|+++|++|......+.
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~ 36 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEA 36 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence 47899999999999999999999999999987664
No 118
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.49 E-value=0.0088 Score=42.13 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=34.0
Q ss_pred EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec--CCeEEEEE
Q 021491 250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLVI 291 (311)
Q Consensus 250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~--g~~a~D~F 291 (311)
+.+.+.|+||.|.+|++.|+++|++|.+...... ++.+.=.|
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i 45 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVI 45 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEE
Confidence 5778999999999999999999999999987652 34444334
No 119
>PRK08577 hypothetical protein; Provisional
Probab=96.43 E-value=0.037 Score=45.39 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=49.7
Q ss_pred CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
......+.+.|.+.|+||+|++|++.|+++|+||.+....+. ++.+.-.|.+.- + +. +.++..+.+.|.+
T Consensus 51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev-~-~~----~~~l~~l~~~L~~ 122 (136)
T PRK08577 51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDL-S-KS----DIDLEELEEELKK 122 (136)
T ss_pred CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEe-C-Cc----hhhHHHHHHHHHc
Confidence 445568899999999999999999999999999999887765 344444454543 1 11 1344556565553
No 120
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.43 E-value=0.0047 Score=43.85 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=36.2
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEE
Q 021491 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK 163 (311)
Q Consensus 119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~ 163 (311)
+.+.+.|+||+|++++..|++.|+||.+....+.++.+.-.|.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~ 46 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID 46 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence 567899999999999999999999998876665556665555544
No 121
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.37 E-value=0.044 Score=37.46 Aligned_cols=46 Identities=20% Similarity=0.384 Sum_probs=36.7
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEe
Q 021491 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD 164 (311)
Q Consensus 119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~ 164 (311)
+.|.+.|+||.+.+++..|.+++++|.+..+...+ +...-.|.+..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEV 47 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEE
Confidence 46779999999999999999999999999887765 44444454543
No 122
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.34 E-value=0.02 Score=40.95 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=37.9
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEe
Q 021491 38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTD 83 (311)
Q Consensus 38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~ 83 (311)
+.+..+|+||.+++++..|+++|+||.+..... .++...-.|.+..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 567899999999999999999999999887764 4567766676643
No 123
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.34 E-value=0.01 Score=41.43 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=31.3
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN 153 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~ 153 (311)
++.|.-+|+||-|+++++.|+++|+||.+...+...
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 367888999999999999999999999888775543
No 124
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.30 E-value=0.045 Score=39.09 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=38.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEE
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVT 82 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~ 82 (311)
+.+.+..+|+||.+.+++.+|+++|+||.+....- ..+...-.|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 57899999999999999999999999999886653 345666556664
No 125
>PRK08577 hypothetical protein; Provisional
Probab=96.30 E-value=0.064 Score=43.96 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=39.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc--CCEEEEEEEEE
Q 021491 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD--GRFFMDVFHVT 82 (311)
Q Consensus 34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~--~g~~~d~f~v~ 82 (311)
....+.|.+.|+||++++++.+|+.+|+||.+....+. ++.+.-.|.+.
T Consensus 55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve 105 (136)
T PRK08577 55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD 105 (136)
T ss_pred cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence 46789999999999999999999999999998887763 45454445554
No 126
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.29 E-value=0.022 Score=42.01 Aligned_cols=46 Identities=9% Similarity=0.197 Sum_probs=39.1
Q ss_pred eEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEe--cCCeEEEEEEE
Q 021491 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT--AGERAYLVINC 293 (311)
Q Consensus 248 tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T--~g~~a~D~F~v 293 (311)
..+++...++||.|.+|+..|..+|+||.+..+.- .++...=++-+
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v 51 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV 51 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE
Confidence 47899999999999999999999999999999975 45556656655
No 127
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=96.29 E-value=0.016 Score=49.70 Aligned_cols=107 Identities=9% Similarity=0.094 Sum_probs=60.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC----C
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG----R 109 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r----r 109 (311)
..+.|.+.|+||++++++++|+..|+||.+-.+.. ..|.. .+.+.-+.+... -+.+.++|++.. +.... .
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~s--r~TIvv~~~~~~-ieqL~kQL~KLi-dVl~V~~~~~ 78 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGIS--RITMVVPGDDRT-IEQLTKQLYKLV-NILKVQDITN 78 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCcc--EEEEEEECCHHH-HHHHHHHHHHHh-HhhEEEecCC
Confidence 46899999999999999999999999999999974 33444 333332322210 133444444422 11110 0
Q ss_pred -CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEE
Q 021491 110 -SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAK 148 (311)
Q Consensus 110 -~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~ 148 (311)
+.-......+.|.++.. --..+.+.....+..|.+..
T Consensus 79 ~~~v~rEl~LiKv~~~~~--~r~ei~~~~~~f~a~ivdv~ 116 (174)
T CHL00100 79 IPCVERELMLIKINVNSQ--TRPEILEIAQIFRAKVVDLS 116 (174)
T ss_pred ccceeeEEEEEEEecCCc--CHHHHHHHHHHhCCEEEEec
Confidence 11233455677776421 12344444445565555543
No 128
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=96.29 E-value=0.064 Score=39.52 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=38.6
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEe
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD 164 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~ 164 (311)
+.+.+..+|+||.|+++.+.|+++|+||.+-...... +...-.|+|..
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 3466777999999999999999999999988766553 34556788875
No 129
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=96.28 E-value=0.018 Score=48.56 Aligned_cols=102 Identities=12% Similarity=0.154 Sum_probs=64.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-c-CCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC------
Q 021491 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-D-GRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG------ 108 (311)
Q Consensus 37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r------ 108 (311)
.++|...|+||.|++++++|+..|+||.+-.+.. . .|...-++.|.. . +...+.|.+-|......
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~---d----~~~i~qi~kQl~Kli~V~~V~~~ 75 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG---D----DKVLEQITKQLNKLVDVIKVSDL 75 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC---C----HHHHHHHHHHHhcCccEEEEEec
Confidence 5889999999999999999999999999988874 3 466665666642 2 23344444444433221
Q ss_pred C--CCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEE
Q 021491 109 R--SNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEA 147 (311)
Q Consensus 109 r--~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A 147 (311)
. +.-......+.|.++.. --..|.+.....+..|.+.
T Consensus 76 ~~~~~v~rEl~LiKv~~~~~--~r~~i~~i~~~f~a~ivdv 114 (157)
T TIGR00119 76 TESAIVERELCLVKVSAPGE--GRDEIIRLTNIFRGRIVDV 114 (157)
T ss_pred CCCcceeeEEEEEEEECCcc--CHHHHHHHHHHhCCEEEEe
Confidence 0 11233455677776432 2345555556667666654
No 130
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.25 E-value=0.0031 Score=45.83 Aligned_cols=47 Identities=23% Similarity=0.487 Sum_probs=39.2
Q ss_pred EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEe--cCCeEEEEEEEEe
Q 021491 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINT--AGERAYLVINCYQ 295 (311)
Q Consensus 249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T--~g~~a~D~F~v~~ 295 (311)
-+|+.++-||-.+|++|-||+.+|+.|.+|.|.. .+++...+|-+--
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL 50 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLL 50 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEee
Confidence 3789999999999999999999999999999964 4667666644443
No 131
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.21 E-value=0.016 Score=37.69 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=31.7
Q ss_pred EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC
Q 021491 250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG 284 (311)
Q Consensus 250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g 284 (311)
|.+.++|+||++++|+.+|+++|++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46789999999999999999999999999987754
No 132
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.18 E-value=0.014 Score=41.66 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=36.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEE
Q 021491 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVK 163 (311)
Q Consensus 119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~ 163 (311)
+.+..+|+||.++++++.|+++|+||.+...... ++...-+|.+.
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 4578999999999999999999999998887653 45666566554
No 133
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.15 E-value=0.045 Score=39.38 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=30.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc
Q 021491 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH 152 (311)
Q Consensus 119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~ 152 (311)
+.|.-+|+||-|++++..|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6788999999999999999999999998876654
No 134
>PRK04435 hypothetical protein; Provisional
Probab=96.13 E-value=0.065 Score=44.64 Aligned_cols=69 Identities=28% Similarity=0.350 Sum_probs=50.8
Q ss_pred CCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 112 SFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 112 ~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
.......+.+...|+||+|++|++.|++.|+||........ +|.+.-.|.+.. . .. ...++.|.+.|.+
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev-s--~~---~~~L~~Li~~L~~ 134 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT-S--SM---EGDIDELLEKLRN 134 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe-C--Ch---HHHHHHHHHHHHc
Confidence 35567789999999999999999999999999998877654 566666666664 1 11 1255666666553
No 135
>PRK04435 hypothetical protein; Provisional
Probab=96.10 E-value=0.039 Score=45.98 Aligned_cols=58 Identities=14% Similarity=0.008 Sum_probs=45.8
Q ss_pred EEEecCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEe
Q 021491 26 VIDNAVCPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTD 83 (311)
Q Consensus 26 ~~~~~~~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~ 83 (311)
-+.....+....+.+..+|+||++++|+.+|+.+|+||....... .+|.+--.|.+..
T Consensus 60 ~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev 118 (147)
T PRK04435 60 PFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT 118 (147)
T ss_pred CccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe
Confidence 333434556678999999999999999999999999999888765 4576666677754
No 136
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=95.98 E-value=0.26 Score=47.65 Aligned_cols=105 Identities=16% Similarity=0.264 Sum_probs=67.5
Q ss_pred eEEEEEE---ecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCC
Q 021491 35 ATLVKVD---SARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSN 111 (311)
Q Consensus 35 ~t~V~V~---~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~ 111 (311)
...|+|. .+++||+++++..+|++.|++|..-.... .. .--.|.|...+ .++..+.|++.+.......-.
T Consensus 260 va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~-s~-~~Is~~V~~~d-----~~~a~~~L~~~~~~~~~~~i~ 332 (401)
T TIGR00656 260 VTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTP-SE-TSISLTVDETD-----ADEAVRALKDQSGAAGLDRVE 332 (401)
T ss_pred EEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCC-CC-ceEEEEEeHHH-----HHHHHHHHHHHHHhcCCceEE
Confidence 4456676 57889999999999999999997443321 22 11236663211 123444444433211100001
Q ss_pred CCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEE
Q 021491 112 SFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVE 146 (311)
Q Consensus 112 ~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~ 146 (311)
...+...|.|.+. ++||+++++..+|.+.|+||..
T Consensus 333 ~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 333 VEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred EeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 2346778888885 7999999999999999999984
No 137
>PRK06635 aspartate kinase; Reviewed
Probab=95.98 E-value=0.18 Score=48.84 Aligned_cols=100 Identities=13% Similarity=0.169 Sum_probs=65.9
Q ss_pred ecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCC-CCCCCCeEEE
Q 021491 42 SARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGR-SNSFNGLTAL 119 (311)
Q Consensus 42 ~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr-~~~~~~~t~i 119 (311)
..++||+++++..+|++.|+||.....+. .+|..--.|.|...+. +...+.|++ +......+ -....+...+
T Consensus 270 ~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~~~~i~~~~~ia~i 343 (404)
T PRK06635 270 VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIGAESVTYDDDIAKV 343 (404)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcCcceEEEcCCeEEE
Confidence 56789999999999999999999654442 3334554566643111 223333333 11111000 0123466778
Q ss_pred EEEe---CCcccHHHHHHHHHHhCCCeEEEE
Q 021491 120 ELTG---TDRVGLLSEVFAVLADLQCSVVEA 147 (311)
Q Consensus 120 ~V~~---~DrpGLL~~I~~~L~~~glnI~~A 147 (311)
.|.+ +++||.++++.++|++.|+||...
T Consensus 344 svvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 344 SVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred EEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 8876 689999999999999999999874
No 138
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.97 E-value=0.033 Score=38.13 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=35.6
Q ss_pred EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC-CeEEEEEEE
Q 021491 250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLVINC 293 (311)
Q Consensus 250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g-~~a~D~F~v 293 (311)
+.+.+.|+||++.+|+..|.+++++|....+...+ +.+.-.|-+
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 45 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTL 45 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEE
Confidence 46789999999999999999999999999998776 433333433
No 139
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=95.92 E-value=0.033 Score=39.47 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=37.6
Q ss_pred CcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 125 DRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 125 DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
|+||.|.+|++.|...|+||.+..+... ++...-++.+.. . +..++.|...|.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~----~----~~~i~~l~~Ql~K 56 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG----D----DREIEQLVKQLEK 56 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee----C----chhHHHHHHHHhc
Confidence 7899999999999999999999999874 455554554443 1 1344566666554
No 140
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=95.90 E-value=0.052 Score=35.13 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=31.0
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEc
Q 021491 38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISSD 71 (311)
Q Consensus 38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~ 71 (311)
|.+.++|+||++++++.+|+..|++|........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~ 34 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS 34 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence 4688999999999999999999999999998764
No 141
>PRK07334 threonine dehydratase; Provisional
Probab=95.88 E-value=0.18 Score=48.94 Aligned_cols=64 Identities=20% Similarity=0.301 Sum_probs=49.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-----CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-----NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-----~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
.+.|.|.+.||||+|++|+.+|++.++||.+....+. ++.+.-.|.|.- . +.++++.+...|.+
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-~------d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-R------DAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-C------CHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999998764 455555555543 1 24566677776664
No 142
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.84 E-value=0.023 Score=40.94 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=30.4
Q ss_pred EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec
Q 021491 250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA 283 (311)
Q Consensus 250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~ 283 (311)
+.+.-+|+||-|++++..|+++|+||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5778999999999999999999999998876654
No 143
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.77 E-value=0.037 Score=39.51 Aligned_cols=47 Identities=19% Similarity=0.279 Sum_probs=35.5
Q ss_pred eEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec--CCeEEEEEEEE
Q 021491 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLVINCY 294 (311)
Q Consensus 248 tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~--g~~a~D~F~v~ 294 (311)
+.+.+..+|+||.|.+++.+|+++|+||.+....-. ++...=+|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 357888999999999999999999999998865432 23444444443
No 144
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=95.54 E-value=0.012 Score=44.30 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=46.2
Q ss_pred EEEEEeCC-cccHHHHHHHHHHhCCCeEEEEEEEcc-----C----ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491 118 ALELTGTD-RVGLLSEVFAVLADLQCSVVEAKVWTH-----N----GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV 187 (311)
Q Consensus 118 ~i~V~~~D-rpGLL~~I~~~L~~~glnI~~A~i~T~-----~----~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (311)
+|+|.+.| +.|++++++++|+++|+||.+-+-.+. + ....-.|.|+. .+. ..+.++..|.+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~----~~~----~~~~lr~~L~~- 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRG----QPA----DLEALRAALLE- 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeC----CCC----CHHHHHHHHHH-
Confidence 47899999 999999999999999999965444211 1 24455666664 222 23678888875
Q ss_pred hcCCCC
Q 021491 188 LKGDND 193 (311)
Q Consensus 188 L~~~~~ 193 (311)
+..+.+
T Consensus 72 la~elg 77 (84)
T cd04871 72 LASELN 77 (84)
T ss_pred HhcccC
Confidence 444444
No 145
>PRK08210 aspartate kinase I; Reviewed
Probab=95.51 E-value=0.85 Score=44.21 Aligned_cols=98 Identities=15% Similarity=0.254 Sum_probs=64.3
Q ss_pred eEEEEEEecCC-CcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCCCC
Q 021491 35 ATLVKVDSARR-HGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSF 113 (311)
Q Consensus 35 ~t~V~V~~~Dr-pGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~~~ 113 (311)
-..|+|...+. ||.++++..+|++.|+||.....+.. . -.|++... + .+...+.|..... .....
T Consensus 271 i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~--~--is~~v~~~--------~-~~~a~~~l~~~~~-~v~~~ 336 (403)
T PRK08210 271 VTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT--E--VVFTVSDE--------D-SEKAKEILENLGL-KPSVR 336 (403)
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc--e--EEEEEcHH--------H-HHHHHHHHHHhCC-cEEEe
Confidence 34556665444 99999999999999999997644322 1 23555421 1 1222333332210 01123
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEE
Q 021491 114 NGLTALELTGT---DRVGLLSEVFAVLADLQCSVVE 146 (311)
Q Consensus 114 ~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~ 146 (311)
.+...|.|.+. ++||+++++..+|++.|+||..
T Consensus 337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 46778888875 7999999999999999999974
No 146
>PRK06635 aspartate kinase; Reviewed
Probab=95.49 E-value=0.35 Score=46.86 Aligned_cols=106 Identities=15% Similarity=0.196 Sum_probs=66.0
Q ss_pred EEEE-eCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCcch
Q 021491 119 LELT-GTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDIRS 196 (311)
Q Consensus 119 i~V~-~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~ 196 (311)
|+|. ..++||+++++..+|+++|+||.....+... +...-.|.|.. +..+...+.|.+ +..+...
T Consensus 265 Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~~~~~-- 331 (404)
T PRK06635 265 VTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKDEIGA-- 331 (404)
T ss_pred EEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHHHcCc--
Confidence 4444 3578999999999999999999965443222 23444555543 222333333333 1110100
Q ss_pred hhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEe---CCccchHHHHHHHhhcCCe
Q 021491 197 AKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQC---KDRTKLLFDVVCTLTDMEY 273 (311)
Q Consensus 197 ~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~---~DRpGLL~~I~~~l~~~gi 273 (311)
..|++ ..+.+++.|.+ +|+||++++|.++|++.|+
T Consensus 332 --------------------------------------~~i~~----~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~I 369 (404)
T PRK06635 332 --------------------------------------ESVTY----DDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGI 369 (404)
T ss_pred --------------------------------------ceEEE----cCCeEEEEEECCCCCCCchHHHHHHHHHHHCCC
Confidence 11111 12355777765 6999999999999999999
Q ss_pred EEEEEE
Q 021491 274 VVFHAT 279 (311)
Q Consensus 274 ~I~~A~ 279 (311)
+|....
T Consensus 370 ni~~i~ 375 (404)
T PRK06635 370 NIQMIS 375 (404)
T ss_pred CEEEEE
Confidence 998853
No 147
>PRK06291 aspartate kinase; Provisional
Probab=95.36 E-value=0.78 Score=45.44 Aligned_cols=110 Identities=10% Similarity=0.104 Sum_probs=71.8
Q ss_pred eEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCC
Q 021491 35 ATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSN 111 (311)
Q Consensus 35 ~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~ 111 (311)
...|+|.+. +.||+++++..+|+++|++|......+.... -.|.|...+ .+...+.|++.+....-..-.
T Consensus 321 valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~s--Isf~V~~~d-----~~~av~~L~~~~~~~~~~~i~ 393 (465)
T PRK06291 321 VALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESN--ISLVVDEAD-----LEKALKALRREFGEGLVRDVT 393 (465)
T ss_pred EEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCce--EEEEEeHHH-----HHHHHHHHHHHHHHhcCcceE
Confidence 456677654 7899999999999999999986544332221 235664311 123445555555431100011
Q ss_pred CCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491 112 SFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWT 151 (311)
Q Consensus 112 ~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T 151 (311)
...+...|.|.+. +++|+.+++..+|.+.|+||..-...+
T Consensus 394 ~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgs 436 (465)
T PRK06291 394 FDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGS 436 (465)
T ss_pred EeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEecc
Confidence 2346778999985 799999999999999999998544433
No 148
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.22 E-value=0.074 Score=40.52 Aligned_cols=52 Identities=8% Similarity=-0.057 Sum_probs=39.9
Q ss_pred CceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeE-EEEEEEEec
Q 021491 245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA-YLVINCYQF 296 (311)
Q Consensus 245 ~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a-~D~F~v~~~ 296 (311)
...|.|-+..+|+||-|+++...|+++|||+.+..-.-....- +=.|||.-.
T Consensus 12 ~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDie 64 (90)
T cd04931 12 NGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLD 64 (90)
T ss_pred CCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE
Confidence 3446677777999999999999999999999999887655443 345666543
No 149
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.05 E-value=0.09 Score=38.11 Aligned_cols=46 Identities=4% Similarity=-0.149 Sum_probs=36.2
Q ss_pred EEEeCCccchHHHHHHHhhcCCeEEEEEEEEec-CCeEEEEEEEEec
Q 021491 251 NVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA-GERAYLVINCYQF 296 (311)
Q Consensus 251 ~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~-g~~a~D~F~v~~~ 296 (311)
-+..+|+||-|++|...|+++|+||.+..-.-. +....=.|||.-.
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~ 49 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFE 49 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEE
Confidence 345689999999999999999999999966543 4456666777655
No 150
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=94.84 E-value=0.086 Score=37.30 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEE
Q 021491 44 RRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVT 82 (311)
Q Consensus 44 DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~ 82 (311)
|+||.+.+++++|...|+||.+-.+.. .++..--++.+.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~ 41 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS 41 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe
Confidence 789999999999999999999999985 456655445554
No 151
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.81 E-value=0.41 Score=34.59 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=35.0
Q ss_pred EEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEe
Q 021491 120 ELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD 164 (311)
Q Consensus 120 ~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~ 164 (311)
.+..+|+||-|+++...|+++|+||.+-.-.... ....-.|+|.-
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~ 48 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF 48 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence 4455899999999999999999999988655443 34555677775
No 152
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.73 E-value=0.25 Score=35.21 Aligned_cols=60 Identities=17% Similarity=0.295 Sum_probs=40.2
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
+.|.-+||||-|.+++..++. |.||...+-...+ +.+.-.+.+.. . +++..+.+.+.|.+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~-~------~~~~~~~i~~~L~~ 61 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQV-P------DREDLAELKERLEA 61 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEe-C------CHHHHHHHHHHHHH
Confidence 357789999999999999999 9999877665433 22222233332 1 24566777777664
No 153
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.71 E-value=0.03 Score=41.03 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=36.4
Q ss_pred EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCe-EEEEEEEEec
Q 021491 250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER-AYLVINCYQF 296 (311)
Q Consensus 250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~-a~D~F~v~~~ 296 (311)
|-+..+|+||-|+++...|+.+|+|+.+..-...+.. -+=.|||.-.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e 50 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCE 50 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE
Confidence 4455689999999999999999999999988765433 4455666543
No 154
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.59 E-value=0.14 Score=53.36 Aligned_cols=58 Identities=19% Similarity=0.138 Sum_probs=43.8
Q ss_pred EEEEcCCC-CceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC--CeEEEEEEEE
Q 021491 237 VTVQNWAD-RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG--ERAYLVINCY 294 (311)
Q Consensus 237 V~id~~~s-~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g--~~a~D~F~v~ 294 (311)
|+++...+ ...+.|.|.+.||+|||.+|+.++++.++||..+.+.+.. +.+.-.|-|.
T Consensus 655 V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie 715 (743)
T PRK10872 655 AVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE 715 (743)
T ss_pred eEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE
Confidence 45543322 2445899999999999999999999999999999998753 5555555443
No 155
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.52 E-value=0.097 Score=38.14 Aligned_cols=70 Identities=19% Similarity=0.230 Sum_probs=47.2
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (311)
Q Consensus 119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (311)
|+++++-||-.||+++-+|..+|+-|-+|+|... +++-..++.+.-...+..+..+....++.+.+...|
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l 74 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL 74 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999754 555555544433012223433333455555554443
No 156
>PRK09034 aspartate kinase; Reviewed
Probab=94.42 E-value=1.3 Score=43.78 Aligned_cols=107 Identities=14% Similarity=0.142 Sum_probs=67.5
Q ss_pred EEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHH-HHHHHHhhhccCCCC-
Q 021491 36 TLVKVDS---ARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVI-SYIEQSLETIHYGRS- 110 (311)
Q Consensus 36 t~V~V~~---~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~-~~l~~~L~~~~~rr~- 110 (311)
+.|++.. ++++|+++++..+|+++|+||.-. +.+. .--.|.|...+ . +... ..+.+.|........
T Consensus 309 ~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~-~sis~~v~~~~---~--~~a~~~~l~~el~~~~~~~~I 379 (454)
T PRK09034 309 TSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGI-DDLSIIIRERQ---L--TPKKEDEILAEIKQELNPDEL 379 (454)
T ss_pred EEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCC-cEEEEEEeHHH---h--hHHHHHHHHHHHHHhhCCceE
Confidence 3455553 678999999999999999999874 2222 22347775421 1 1111 222223332111000
Q ss_pred CCCCCeEEEEEEe---CCcccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491 111 NSFNGLTALELTG---TDRVGLLSEVFAVLADLQCSVVEAKVWT 151 (311)
Q Consensus 111 ~~~~~~t~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~i~T 151 (311)
....+...|.+.+ .++||+++++..+|++.|+||......+
T Consensus 380 ~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 380 EIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred EEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 2244677889976 4789999999999999999998665444
No 157
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.41 E-value=0.24 Score=51.58 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=49.4
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
-...|.|.+.||+|+|++|+.+++..++||.+..+.+. ++.+...|.|.- . +..++..+-..|.+
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-~------~~~~L~~l~~~L~~ 731 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-Y------NLQVLGRVLGKLNQ 731 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-C------CHHHHHHHHHHHhc
Confidence 44588999999999999999999999999999998775 466666666654 1 23556666666553
No 158
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=94.31 E-value=0.038 Score=40.33 Aligned_cols=47 Identities=6% Similarity=-0.050 Sum_probs=35.9
Q ss_pred EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCe-EEEEEEEEec
Q 021491 250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER-AYLVINCYQF 296 (311)
Q Consensus 250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~-a~D~F~v~~~ 296 (311)
|-+..+|+||-|+++...|+.+|||+.+..-.-...+ -+=.|||.-.
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~ 50 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE 50 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE
Confidence 4455689999999999999999999999888765443 3445656543
No 159
>PRK07334 threonine dehydratase; Provisional
Probab=94.31 E-value=0.18 Score=49.01 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=34.5
Q ss_pred eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec
Q 021491 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA 283 (311)
Q Consensus 247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~ 283 (311)
.+.|+|.+.||||+|.+|+++|++.++||.+....+.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~ 362 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRL 362 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEec
Confidence 4689999999999999999999999999999998865
No 160
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=94.23 E-value=0.067 Score=37.99 Aligned_cols=47 Identities=13% Similarity=0.187 Sum_probs=35.9
Q ss_pred ceeEEEEEeC----CccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecC
Q 021491 246 SYSVVNVQCK----DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFD 297 (311)
Q Consensus 246 ~~tvl~v~~~----DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~ 297 (311)
++..+.|.++ |.||+++++..+|++.||+|.... |+ -.|.|.|...+
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~---~~~~ilV~~~~ 55 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SE---ISISILVKEED 55 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ES---SEEEEEEEGGG
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Ee---eeEEEEEeHHH
Confidence 4667888877 899999999999999999998877 43 24556665543
No 161
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=94.04 E-value=1.7 Score=41.97 Aligned_cols=107 Identities=13% Similarity=0.179 Sum_probs=66.3
Q ss_pred CeEEEEEE---eCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491 115 GLTALELT---GTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD 191 (311)
Q Consensus 115 ~~t~i~V~---~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (311)
+...|+|. ..+++|+++++..+|.++|++|..-...... ..-.|.|.. +..++..+.|++.+..
T Consensus 259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~--~~Is~~V~~----------~d~~~a~~~L~~~~~~- 325 (401)
T TIGR00656 259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE--TSISLTVDE----------TDADEAVRALKDQSGA- 325 (401)
T ss_pred CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC--ceEEEEEeH----------HHHHHHHHHHHHHHHh-
Confidence 34467777 4678999999999999999999754332111 222355532 2223333334332211
Q ss_pred CCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeC---CccchHHHHHHHh
Q 021491 192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCK---DRTKLLFDVVCTL 268 (311)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~---DRpGLL~~I~~~l 268 (311)
.. + ..+.++ .+.+++.|.+. ++||+++++.++|
T Consensus 326 ~~----------------------------~------------~~i~~~----~~~a~IsvVG~~~~~~~g~~a~i~~~L 361 (401)
T TIGR00656 326 AG----------------------------L------------DRVEVE----EGLAKVSIVGAGMVGAPGVASEIFSAL 361 (401)
T ss_pred cC----------------------------C------------ceEEEe----CCeEEEEEECCCcccCccHHHHHHHHH
Confidence 00 0 111211 24567777764 7999999999999
Q ss_pred hcCCeEEEEE
Q 021491 269 TDMEYVVFHA 278 (311)
Q Consensus 269 ~~~gi~I~~A 278 (311)
++.|+||...
T Consensus 362 ~~~gIni~~i 371 (401)
T TIGR00656 362 EEKNINILMI 371 (401)
T ss_pred HHCCCcEEEE
Confidence 9999999853
No 162
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=93.68 E-value=0.064 Score=40.21 Aligned_cols=61 Identities=16% Similarity=0.080 Sum_probs=42.0
Q ss_pred EEEEEecC-CCcHHHHHHHHHHhCCceEEEEEEEEc---------CCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491 37 LVKVDSAR-RHGILLEAVQVLTDLNLLIKKAYISSD---------GRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (311)
Q Consensus 37 ~V~V~~~D-rpGL~~~i~~~L~~~glnI~~A~i~t~---------~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (311)
.|+|.++| ..|++++++.+|+++|+||.+-+-.+. .+...-.|.|.. .+.+.+.+++.|..
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~---~~~~~~~lr~~L~~ 71 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRG---QPADLEALRAALLE 71 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeC---CCCCHHHHHHHHHH
Confidence 38999999 999999999999999999986555321 123444577753 32333455555553
No 163
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=93.68 E-value=0.29 Score=43.16 Aligned_cols=53 Identities=15% Similarity=0.148 Sum_probs=42.5
Q ss_pred CCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEE
Q 021491 111 NSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVK 163 (311)
Q Consensus 111 ~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~ 163 (311)
+..+....+-+.-.|+||.+.+++..|.++|+||...++... ++.+.-+..+.
T Consensus 143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD 197 (208)
T TIGR00719 143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID 197 (208)
T ss_pred EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC
Confidence 334455667788899999999999999999999999999875 56776555553
No 164
>PLN02551 aspartokinase
Probab=93.64 E-value=4.8 Score=40.52 Aligned_cols=136 Identities=15% Similarity=0.205 Sum_probs=78.7
Q ss_pred eEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC-CC
Q 021491 35 ATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG-RS 110 (311)
Q Consensus 35 ~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r-r~ 110 (311)
.+.|+|.+. +.+|+++++...|+++|++|.-- .+.. .--.|.+...+-.. .+.+.+.+++.+.+.... +-
T Consensus 366 v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~~~~--~~~i~~~l~~l~~el~~~~~V 439 (521)
T PLN02551 366 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSKLWS--RELIQQELDHLVEELEKIAVV 439 (521)
T ss_pred eEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhHhhh--hhhHHHHHHHHHHHhhcCCeE
Confidence 345666544 68999999999999999999865 2222 12246665422110 011222222222111100 01
Q ss_pred CCCCCeEEEEEEeC--CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491 111 NSFNGLTALELTGT--DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (311)
Q Consensus 111 ~~~~~~t~i~V~~~--DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (311)
....+...|.|++. ..+|+++++..+|++.|+||..-...+. ..--.|.|.. +..++.-+.|++.+
T Consensus 440 ~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaS--einIS~vV~~----------~d~~~Av~aLH~~F 507 (521)
T PLN02551 440 NLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGAS--KVNISLIVND----------DEAEQCVRALHSAF 507 (521)
T ss_pred EEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCC--CcEEEEEEeH----------HHHHHHHHHHHHHH
Confidence 12346778888864 6899999999999999999986555443 1222355543 23344455556544
No 165
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.62 E-value=0.27 Score=51.13 Aligned_cols=55 Identities=7% Similarity=0.020 Sum_probs=42.1
Q ss_pred EEEEcCCC-CceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCC-eEEEEE
Q 021491 237 VTVQNWAD-RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGE-RAYLVI 291 (311)
Q Consensus 237 V~id~~~s-~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~-~a~D~F 291 (311)
|.++...+ .-.+.|.|.+.||+|+|.+|+.++++.++||.++.+.+..+ .+.-.|
T Consensus 615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~ 671 (702)
T PRK11092 615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFI 671 (702)
T ss_pred eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEE
Confidence 45543322 23558999999999999999999999999999999988753 444344
No 166
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.60 E-value=1.4 Score=33.55 Aligned_cols=49 Identities=10% Similarity=0.195 Sum_probs=38.5
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEe
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD 164 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~ 164 (311)
.+.+.+..+|+||-|+++...|+.+|+|+..-.-.-. +....-.|||.-
T Consensus 14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi 63 (90)
T cd04931 14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL 63 (90)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 4556666699999999999999999999987776654 334456788875
No 167
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.58 E-value=0.42 Score=49.73 Aligned_cols=64 Identities=11% Similarity=0.196 Sum_probs=48.5
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLR 185 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (311)
-...|.|.+.||+|+|++|+.+++..++||.+....+.+ +.+...|.|.- . +.+++..|-..|.
T Consensus 625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-~------~~~~L~~i~~~Lr 689 (702)
T PRK11092 625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-R------DRVHLANIMRKIR 689 (702)
T ss_pred eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-C------CHHHHHHHHHHHh
Confidence 355889999999999999999999999999999987764 45555566654 1 2355555655554
No 168
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=93.46 E-value=0.27 Score=41.51 Aligned_cols=46 Identities=13% Similarity=0.345 Sum_probs=37.7
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-c-eEEEEEEEE
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-G-RIASLIYVK 163 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~-~~~d~F~V~ 163 (311)
-+.+.+.++||.|.++++.++++|.||..++.+..+ | .+.-.|.+.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiE 51 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIE 51 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEee
Confidence 367889999999999999999999999999999874 3 444444444
No 169
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=93.38 E-value=0.29 Score=41.33 Aligned_cols=45 Identities=9% Similarity=0.033 Sum_probs=37.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCC-EEEEEEEE
Q 021491 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGR-FFMDVFHV 81 (311)
Q Consensus 37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g-~~~d~f~v 81 (311)
-+.+.+.++||.|.++++.+++.|.||.-|+.+. .+| ...--|.+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi 50 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI 50 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence 4788999999999999999999999999999996 455 44433444
No 170
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=93.35 E-value=0.34 Score=50.33 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=39.2
Q ss_pred EEEEcC-CCCceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC
Q 021491 237 VTVQNW-ADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG 284 (311)
Q Consensus 237 V~id~~-~s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g 284 (311)
|.++.. .+...+.|.|.+.||+|+|.+|+.++++.++||.++.+.+..
T Consensus 599 v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~ 647 (683)
T TIGR00691 599 VEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYG 647 (683)
T ss_pred EEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcC
Confidence 445433 223455899999999999999999999999999999998874
No 171
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=93.31 E-value=2.8 Score=44.56 Aligned_cols=111 Identities=13% Similarity=0.164 Sum_probs=72.7
Q ss_pred CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCC--
Q 021491 34 TATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYG-- 108 (311)
Q Consensus 34 ~~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~r-- 108 (311)
+...|+|.+. .+||+++++..+|+++|++|......+ +..- -.|.|...+. +...+.|++.+......
T Consensus 314 dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~s-Isf~V~~~d~-----~~av~~L~~~f~~el~~~~ 386 (819)
T PRK09436 314 NMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEYS-ISFCVPQSDA-----AKAKRALEEEFALELKEGL 386 (819)
T ss_pred CEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCce-EEEEEeHHHH-----HHHHHHHHHHHHHHhccCC
Confidence 4456777654 689999999999999999997554433 2222 2466653211 23344455444322110
Q ss_pred -C-CCCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491 109 -R-SNSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWT 151 (311)
Q Consensus 109 -r-~~~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T 151 (311)
. -....+...|.|.+. ++||+++++..+|.+.|+||..-...+
T Consensus 387 ~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Isqgs 434 (819)
T PRK09436 387 LEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGS 434 (819)
T ss_pred cceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEecc
Confidence 0 122356788999986 789999999999999999998654433
No 172
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=93.28 E-value=0.25 Score=50.93 Aligned_cols=55 Identities=16% Similarity=0.098 Sum_probs=43.9
Q ss_pred EEEEcCC-CCceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEE
Q 021491 237 VTVQNWA-DRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVI 291 (311)
Q Consensus 237 V~id~~~-s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F 291 (311)
|.++++. ....+.|.|.+.||+|||.+|+.+|++.++||.+....+.+++..++.
T Consensus 616 v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~ 671 (701)
T COG0317 616 VSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQ 671 (701)
T ss_pred EEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEE
Confidence 5555553 345668999999999999999999999999999999988655544443
No 173
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.25 E-value=0.22 Score=39.74 Aligned_cols=49 Identities=8% Similarity=-0.011 Sum_probs=38.4
Q ss_pred eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEE-EEEEEe
Q 021491 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL-VINCYQ 295 (311)
Q Consensus 247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D-~F~v~~ 295 (311)
.|.|-+..+|+||-|+++...|+.+|||+.+..-...+..-.+ .|||.-
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 4566666799999999999999999999999988877555443 444543
No 174
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=93.09 E-value=0.43 Score=33.81 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=35.5
Q ss_pred CCeEEEEEEeC----CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491 114 NGLTALELTGT----DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164 (311)
Q Consensus 114 ~~~t~i~V~~~----DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~ 164 (311)
.+...|+|.++ |.||+++++.+.|++.|+||.... |. ..+.+.|..
T Consensus 4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~---~~~~ilV~~ 53 (65)
T PF13840_consen 4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SE---ISISILVKE 53 (65)
T ss_dssp SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ES---SEEEEEEEG
T ss_pred CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Ee---eeEEEEEeH
Confidence 35667888887 799999999999999999998766 33 355666664
No 175
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.95 E-value=0.66 Score=32.94 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=27.6
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE
Q 021491 38 VKVDSARRHGILLEAVQVLTDLNLLIKKAYISS 70 (311)
Q Consensus 38 V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t 70 (311)
+.|.-||+||-|.+++.+++. |.||..-.-..
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~ 32 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRN 32 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEc
Confidence 357889999999999999999 99999876543
No 176
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.94 E-value=0.69 Score=48.08 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=48.1
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLR 185 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (311)
-.+.|.|.+.||+|+|++|+.+++..++||.+.++.+.. +.+.-.|.|.- .+-.++..|-..|.
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~ 673 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIK 673 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence 456889999999999999999999999999999998763 55555555553 12355555555544
No 177
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=92.79 E-value=5 Score=39.35 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=64.9
Q ss_pred eEEEEEEecC-C-CcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCCC
Q 021491 35 ATLVKVDSAR-R-HGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNS 112 (311)
Q Consensus 35 ~t~V~V~~~D-r-pGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~~ 112 (311)
...|+|.+.+ . +|+++++..+|+++|++|......+.. .. -.|.|...+ . +...+.|........-..-..
T Consensus 302 v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~-~----~~a~~~L~~~~~~~~~~~I~~ 374 (441)
T TIGR00657 302 QARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKED-A----DQAKTLLKSELNLSALSSVEV 374 (441)
T ss_pred EEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHH-H----HHHHHHHHHHHHhcCcceEEE
Confidence 3345555432 3 799999999999999999866533322 11 235564321 0 122222322111111000123
Q ss_pred CCCeEEEEEEe---CCcccHHHHHHHHHHhCCCeEEEEE
Q 021491 113 FNGLTALELTG---TDRVGLLSEVFAVLADLQCSVVEAK 148 (311)
Q Consensus 113 ~~~~t~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~ 148 (311)
..+...|+|.+ .+.||+++++..+|++.|+||....
T Consensus 375 ~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 375 EKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred cCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 44677888875 4789999999999999999997664
No 178
>PRK09181 aspartate kinase; Validated
Probab=92.70 E-value=5.6 Score=39.58 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=66.9
Q ss_pred CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCC
Q 021491 34 TATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS 110 (311)
Q Consensus 34 ~~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~ 110 (311)
+.+.|+|.+. +.+|+.+++..+|++.|++|. -+.+.. .--.|.|... . -..+++.+.|++.+.... -
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~--~-~~~~~~~~~L~~~~~~~~---i 397 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS--L-KTLKRVIAELEKRYPNAE---V 397 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC--h-HHHHHHHHHHHHhcCCce---E
Confidence 3445566433 689999999999999999998 233322 2224666432 1 001223333333221110 0
Q ss_pred CCCCCeEEEEEEeCC--cccHHHHHHHHHHhCCCeEEEEEEE
Q 021491 111 NSFNGLTALELTGTD--RVGLLSEVFAVLADLQCSVVEAKVW 150 (311)
Q Consensus 111 ~~~~~~t~i~V~~~D--rpGLL~~I~~~L~~~glnI~~A~i~ 150 (311)
. ..+...|.|++.. +||+.+++..+|.+.|+||..-...
T Consensus 398 ~-~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg 438 (475)
T PRK09181 398 T-VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQS 438 (475)
T ss_pred E-ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEec
Confidence 1 2567889999865 8999999999999999999754444
No 179
>PRK06291 aspartate kinase; Provisional
Probab=92.62 E-value=4.7 Score=39.94 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=70.3
Q ss_pred CeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491 115 GLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD 191 (311)
Q Consensus 115 ~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (311)
+...|+|.+. +.+|+++++..+|+++|+||......+.. ..-.|.|.. +..+...+.|.+.+...
T Consensus 320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse--~sIsf~V~~----------~d~~~av~~L~~~~~~~ 387 (465)
T PRK06291 320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSE--SNISLVVDE----------ADLEKALKALRREFGEG 387 (465)
T ss_pred CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCC--ceEEEEEeH----------HHHHHHHHHHHHHHHHh
Confidence 3466777764 78999999999999999999875443322 222344443 22233333344333221
Q ss_pred CCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeC---CccchHHHHHHHh
Q 021491 192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCK---DRTKLLFDVVCTL 268 (311)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~---DRpGLL~~I~~~l 268 (311)
. ...|++. .+..+|.|.+. ++||++.++..+|
T Consensus 388 ~-----------------------------------------~~~i~~~----~~~a~IsvvG~gm~~~~gv~~rif~aL 422 (465)
T PRK06291 388 L-----------------------------------------VRDVTFD----KDVCVVAVVGAGMAGTPGVAGRIFSAL 422 (465)
T ss_pred c-----------------------------------------CcceEEe----CCEEEEEEEcCCccCCcChHHHHHHHH
Confidence 0 0111221 23567888775 7999999999999
Q ss_pred hcCCeEEEEEEEEec
Q 021491 269 TDMEYVVFHATINTA 283 (311)
Q Consensus 269 ~~~gi~I~~A~I~T~ 283 (311)
++.||+|....-.+.
T Consensus 423 ~~~~I~v~~isqgsS 437 (465)
T PRK06291 423 GESGINIKMISQGSS 437 (465)
T ss_pred HHCCCCEEEEEeccc
Confidence 999999986554443
No 180
>PRK11899 prephenate dehydratase; Provisional
Probab=92.55 E-value=0.4 Score=44.23 Aligned_cols=49 Identities=4% Similarity=-0.036 Sum_probs=38.8
Q ss_pred eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeE-EEEEEEEe
Q 021491 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERA-YLVINCYQ 295 (311)
Q Consensus 247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a-~D~F~v~~ 295 (311)
.|.|-+..+|+||.||++...|+++|||+.+..-.-.+.+- +=.|||.-
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~ 243 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI 243 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence 46666667899999999999999999999999988665454 44566543
No 181
>PRK06382 threonine dehydratase; Provisional
Probab=92.32 E-value=2.7 Score=40.80 Aligned_cols=65 Identities=25% Similarity=0.241 Sum_probs=47.7
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEE----cc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW----TH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~----T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
..+.+.|.-+|+||-|.+++..|.++|+||.+.... .. .+...-+|.|.. . +++..+.|.+.|.+
T Consensus 329 ~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet-~------~~~~~~~v~~~L~~ 398 (406)
T PRK06382 329 QLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNV-R------GQDHLDRILNALRE 398 (406)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEe-C------CHHHHHHHHHHHHH
Confidence 467899999999999999999999999999877664 12 345555676765 1 13454566666654
No 182
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=92.22 E-value=1.5 Score=31.73 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=35.6
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEe
Q 021491 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD 164 (311)
Q Consensus 119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~ 164 (311)
+.+..+|+||-|+++...|+.+|+|+..-.-.... ....-.|+|.-
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 44455899999999999999999999876665543 34556788875
No 183
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.17 E-value=1.6 Score=31.77 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=36.3
Q ss_pred EEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEe
Q 021491 119 LELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD 164 (311)
Q Consensus 119 i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~ 164 (311)
+.+..+|+||-|+++...|+.+|+|+..-.-... +....-.|||.-
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 3445589999999999999999999987776655 344556788875
No 184
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=91.93 E-value=0.76 Score=47.47 Aligned_cols=66 Identities=23% Similarity=0.295 Sum_probs=47.6
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCc-eEEEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 021491 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNG-RIASLIYVKDCNSGSPIEDSQQIDRIEARLR 185 (311)
Q Consensus 113 ~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~-~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~ 185 (311)
..-.+.|.|.+.||+|+|++|+.+|+..++||......+.++ .+.-.|.+.- .+-.++..|-..|.
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v-------~n~~~L~~i~~~l~ 690 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV-------KNLNHLGRVLARLK 690 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE-------CcHHHHHHHHHHHh
Confidence 345678999999999999999999999999999999988643 3444444443 12345555555444
No 185
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.84 E-value=1.7 Score=32.40 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=38.9
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
++.|.-+|+||-|++++.+|+ +.||....-... .+.+.-.+.+.. . +. ++..+.+.+.|.+
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~-~-~~----~~~~~~i~~~L~~ 64 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSV-A-NG----AEELAELLEDLKS 64 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEe-C-Cc----HHHHHHHHHHHHH
Confidence 577888999999999999999 556664333322 233443444444 1 10 3566777777765
No 186
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.79 E-value=0.39 Score=46.80 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=43.7
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEE
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVK 163 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~ 163 (311)
....|.+.-.|+||.+++|+..|+++|+||...+..+.++.+..++-+.
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D 385 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVD 385 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeC
Confidence 5677888999999999999999999999999999998888888777554
No 187
>PRK12483 threonine dehydratase; Reviewed
Probab=91.62 E-value=9.9 Score=38.30 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=80.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC-----
Q 021491 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY----- 107 (311)
Q Consensus 34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~----- 107 (311)
....+.|.-|||||-|.+++.+|... ||.+-.-.. ..+.+- ++....-.+. +...+.|...|.....
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~-v~v~ie~~~~----~~~~~~i~~~l~~~g~~~~dl 416 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAH-LFVGVQTHPR----HDPRAQLLASLRAQGFPVLDL 416 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeE-EEEEEEeCCh----hhhHHHHHHHHHHCCCCeEEC
Confidence 45678899999999999999999988 888665543 223322 2322222221 2233556666654321
Q ss_pred ----------C-----CCCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCC
Q 021491 108 ----------G-----RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIE 172 (311)
Q Consensus 108 ----------r-----r~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~ 172 (311)
| |+.....--.+.|.-|.|||-|.+++..|... .||..-+=.-.+.....+|.=-. +.
T Consensus 417 sdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~-~niTeF~YR~~~~~~a~v~vgi~------~~ 489 (521)
T PRK12483 417 TDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPR-WNISLFHYRNHGAADGRVLAGLQ------VP 489 (521)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCC-cceeeeeecCCCCCceEEEEEEe------eC
Confidence 1 12223344578888999999999999999852 34544433323443333442111 11
Q ss_pred ChHHHHHHHHHHHH
Q 021491 173 DSQQIDRIEARLRN 186 (311)
Q Consensus 173 ~~~~~~~l~~~L~~ 186 (311)
+ +..+.+.+.|.+
T Consensus 490 ~-~~~~~~~~~l~~ 502 (521)
T PRK12483 490 E-DERAALDAALAA 502 (521)
T ss_pred h-hHHHHHHHHHHH
Confidence 1 334667777665
No 188
>PRK08210 aspartate kinase I; Reviewed
Probab=91.51 E-value=3.8 Score=39.72 Aligned_cols=98 Identities=19% Similarity=0.307 Sum_probs=61.9
Q ss_pred eEEEEEEeCCc-ccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCCc
Q 021491 116 LTALELTGTDR-VGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDNDI 194 (311)
Q Consensus 116 ~t~i~V~~~Dr-pGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~ 194 (311)
...++|...+. ||.+++|...|+++|+||.....+. . .-.|.+.. +..+++.+.|.+ + + ..
T Consensus 271 i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~--~--~is~~v~~----------~~~~~a~~~l~~-~-~-~~- 332 (403)
T PRK08210 271 VTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP--T--EVVFTVSD----------EDSEKAKEILEN-L-G-LK- 332 (403)
T ss_pred cEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC--c--eEEEEEcH----------HHHHHHHHHHHH-h-C-Cc-
Confidence 44556665444 9999999999999999998774432 1 12344432 222333333332 1 0 00
Q ss_pred chhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeC---CccchHHHHHHHhhcC
Q 021491 195 RSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCK---DRTKLLFDVVCTLTDM 271 (311)
Q Consensus 195 ~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~---DRpGLL~~I~~~l~~~ 271 (311)
+.+ ..+.+++.|.+. ++||++.++.++|++.
T Consensus 333 ------------------------------------------v~~----~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~ 366 (403)
T PRK08210 333 ------------------------------------------PSV----RENCAKVSIVGAGMAGVPGVMAKIVTALSEE 366 (403)
T ss_pred ------------------------------------------EEE----eCCcEEEEEEcCCcCCCccHHHHHHHHHHhC
Confidence 011 113456666664 8999999999999999
Q ss_pred CeEEEE
Q 021491 272 EYVVFH 277 (311)
Q Consensus 272 gi~I~~ 277 (311)
|++|..
T Consensus 367 ~I~i~~ 372 (403)
T PRK08210 367 GIEILQ 372 (403)
T ss_pred CCCEEE
Confidence 999975
No 189
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=91.45 E-value=0.55 Score=43.20 Aligned_cols=55 Identities=2% Similarity=-0.020 Sum_probs=44.0
Q ss_pred ceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCe
Q 021491 246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNY 300 (311)
Q Consensus 246 ~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~ 300 (311)
..|.|-+..+|+||-|+++...|+.+|||+.+..-.-.+..-.+-+|.-|-+|+.
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~ 247 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHI 247 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCc
Confidence 4777888888999999999999999999999999986666655555555555543
No 190
>PRK08818 prephenate dehydrogenase; Provisional
Probab=91.35 E-value=0.41 Score=45.97 Aligned_cols=51 Identities=10% Similarity=-0.079 Sum_probs=38.4
Q ss_pred ceeEEEEEeC-CccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecC
Q 021491 246 SYSVVNVQCK-DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFD 297 (311)
Q Consensus 246 ~~tvl~v~~~-DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~ 297 (311)
..+.+.+.-+ |+||-|++|+..|+++||||.+..+ ....--+-.|||.-.+
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~~~ 345 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGFEP 345 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEEec
Confidence 3556777776 9999999999999999999999999 3332233338776554
No 191
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=91.34 E-value=16 Score=36.08 Aligned_cols=107 Identities=13% Similarity=0.205 Sum_probs=68.7
Q ss_pred CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCC
Q 021491 34 TATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS 110 (311)
Q Consensus 34 ~~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~ 110 (311)
+...|+|... ..+|..+++.+.|+.+|+||.--........ -.|++...+. +...+.+++....... +-
T Consensus 306 ~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-~v 377 (447)
T COG0527 306 NVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-EV 377 (447)
T ss_pred CeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc-eE
Confidence 4445555532 3459999999999999999975444322222 3477753211 2344444444432211 00
Q ss_pred CCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEE
Q 021491 111 NSFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAK 148 (311)
Q Consensus 111 ~~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~ 148 (311)
....+.-.|.+++. ..||..+++..+|++.|+||....
T Consensus 378 ~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 378 EVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred EeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 12446677888874 688999999999999999999776
No 192
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=91.20 E-value=1.1 Score=39.44 Aligned_cols=48 Identities=8% Similarity=0.209 Sum_probs=40.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEE
Q 021491 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHV 81 (311)
Q Consensus 34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v 81 (311)
....+.+.-.|+||...+++.+|.++|+||...++.. .+|.++-+..+
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 3456677789999999999999999999999999985 56778755555
No 193
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=90.49 E-value=6.5 Score=41.88 Aligned_cols=116 Identities=15% Similarity=0.181 Sum_probs=72.5
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491 114 NGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (311)
Q Consensus 114 ~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (311)
.+...|+|.+. ++||+++++..+|+++|++|......+.. ..-.|.|.. +..+.....|.+.+..
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe--~sIsf~V~~----------~d~~~av~~L~~~f~~ 380 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE--YSISFCVPQ----------SDAAKAKRALEEEFAL 380 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC--ceEEEEEeH----------HHHHHHHHHHHHHHHH
Confidence 45667888764 68999999999999999999766544322 222455543 1223333333332211
Q ss_pred CCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeC---CccchHHHHHHH
Q 021491 191 DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCK---DRTKLLFDVVCT 267 (311)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~---DRpGLL~~I~~~ 267 (311)
+... + ....|++. .+..+|.|.+. ++||++.++.++
T Consensus 381 el~~-------------------~------------------~~~~i~~~----~~valIsvvG~gm~~~~gv~arif~a 419 (819)
T PRK09436 381 ELKE-------------------G------------------LLEPLEVE----ENLAIISVVGDGMRTHPGIAAKFFSA 419 (819)
T ss_pred Hhcc-------------------C------------------CcceEEEe----CCEEEEEEEccCcccCcCHHHHHHHH
Confidence 1100 0 01122222 24667888776 789999999999
Q ss_pred hhcCCeEEEEEEEEe
Q 021491 268 LTDMEYVVFHATINT 282 (311)
Q Consensus 268 l~~~gi~I~~A~I~T 282 (311)
|.+.||+|....-.+
T Consensus 420 L~~~~InI~~Isqgs 434 (819)
T PRK09436 420 LGRANINIVAIAQGS 434 (819)
T ss_pred HHHCCCCEEEEEecc
Confidence 999999998764333
No 194
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=90.42 E-value=0.79 Score=41.25 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=33.7
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH 152 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~ 152 (311)
...+|.+...|-||.|++|+++|+..|.||.+.-+--.
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~t 113 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLT 113 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeech
Confidence 45679999999999999999999999999998877644
No 195
>PRK09084 aspartate kinase III; Validated
Probab=90.42 E-value=13 Score=36.67 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=62.8
Q ss_pred CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCC
Q 021491 34 TATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRS 110 (311)
Q Consensus 34 ~~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~ 110 (311)
+...|+|.+. +.+|+++++...|+++|+||.--. +. . .--+|.|...+-.......+.+.+.+.|..... -
T Consensus 305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--ss-e-~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~--i 378 (448)
T PRK09084 305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TS-E-VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCR--V 378 (448)
T ss_pred CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--cc-C-cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCe--E
Confidence 3446667644 689999999999999999998654 22 2 223466654221100001122333333432110 1
Q ss_pred CCCCCeEEEEEEeC---CcccHHHHHHHHHHhCCC
Q 021491 111 NSFNGLTALELTGT---DRVGLLSEVFAVLADLQC 142 (311)
Q Consensus 111 ~~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~gl 142 (311)
....+...|.|.+. ++||+.+++..+|.+.++
T Consensus 379 ~~~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI 413 (448)
T PRK09084 379 EVEEGLALVALIGNNLSKACGVAKRVFGVLEPFNI 413 (448)
T ss_pred EEECCeEEEEEECCCcccCcChHHHHHHHHHhCCe
Confidence 12346788999986 799999999999987543
No 196
>PRK09224 threonine dehydratase; Reviewed
Probab=90.33 E-value=9.8 Score=38.15 Aligned_cols=109 Identities=14% Similarity=0.112 Sum_probs=68.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcC-CEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC-----
Q 021491 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDG-RFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY----- 107 (311)
Q Consensus 34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~-g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~----- 107 (311)
....+.|.-|||||-|.+++.+|. +.||..-.-.-.+ +.+ .+|......+. +.-.+.|.+.|.....
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a-~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~l 399 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEA-HIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDL 399 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeE-EEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEEC
Confidence 345788999999999999999999 6888765543322 322 23333222221 1113444455544321
Q ss_pred ----------C-----CCCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEE
Q 021491 108 ----------G-----RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW 150 (311)
Q Consensus 108 ----------r-----r~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~ 150 (311)
| |+....+--.+.|.-|.|||-|-+++..|. -+.||..-+=.
T Consensus 400 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr 456 (504)
T PRK09224 400 SDDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYR 456 (504)
T ss_pred CCCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEc
Confidence 1 221222445688889999999999999776 77888877764
No 197
>PRK09034 aspartate kinase; Reviewed
Probab=90.08 E-value=9.3 Score=37.74 Aligned_cols=37 Identities=5% Similarity=0.101 Sum_probs=30.1
Q ss_pred ceeEEEEEe---CCccchHHHHHHHhhcCCeEEEEEEEEe
Q 021491 246 SYSVVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATINT 282 (311)
Q Consensus 246 ~~tvl~v~~---~DRpGLL~~I~~~l~~~gi~I~~A~I~T 282 (311)
+...|.|.+ .++||+++++-.+|++.||+|....-.+
T Consensus 384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 355777755 3899999999999999999998886544
No 198
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=89.94 E-value=1.1 Score=37.75 Aligned_cols=66 Identities=20% Similarity=0.285 Sum_probs=46.3
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (311)
.-++.+.-.|.||.|+++++.|++.|+||.+-.+.-. .....-+-.+.. | |+..++++.+.|....
T Consensus 4 ~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g----~~~~~EQi~kQL~kLi 70 (163)
T COG0440 4 RRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---G----DEQVLEQIIKQLNKLI 70 (163)
T ss_pred eEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---C----CcchHHHHHHHHHhhc
Confidence 3467888999999999999999999999999888754 222322222332 2 1245677777777643
No 199
>PRK06545 prephenate dehydrogenase; Validated
Probab=89.87 E-value=1.4 Score=42.12 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=42.1
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164 (311)
Q Consensus 113 ~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~ 164 (311)
.+..+.|.|.-+|+||-+++|+..|...|+||.+-+|.-..+...-++.++-
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~ 338 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF 338 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence 4567899999999999999999999999999999999765444444444443
No 200
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=89.62 E-value=8.6 Score=36.85 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=46.0
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc-----cCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-----HNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T-----~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
....+.|.-+|+||.|++++..+++.|.||.+-.-.. ..+.+.-.+.+.. . +++..+.|.+.|.+
T Consensus 304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet-~------~~~~~~~i~~~L~~ 373 (380)
T TIGR01127 304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLET-R------GKEHLDEILKILRD 373 (380)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEe-C------CHHHHHHHHHHHHH
Confidence 3457899999999999999999999999998775442 1245554555554 1 13555667776654
No 201
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=89.50 E-value=0.65 Score=45.24 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=49.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (311)
Q Consensus 34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (311)
+...+.+.-+|+||.+++|+..|+++|+||..-++.+.+++++-+|-+. +. + ++++.+.|++
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D---~~-~-~~~~~~~i~~ 398 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVD---AD-Y-AEEALDALKA 398 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeC---CC-C-cHHHHHHHHc
Confidence 5678888999999999999999999999999999988888888666553 32 2 2456666653
No 202
>PRK08198 threonine dehydratase; Provisional
Probab=88.99 E-value=4 Score=39.50 Aligned_cols=67 Identities=19% Similarity=0.332 Sum_probs=46.4
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-----CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-----NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 113 ~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-----~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
......+.|.-+|+||-|+++...+++.|.||.+-..... .+.+.-.+.|.. . +++..+.|.+.|++
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~---~----~~~~~~~l~~~L~~ 395 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLET---R----GPEHIEEILDALRD 395 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEe---C----CHHHHHHHHHHHHH
Confidence 3455689999999999999999999999999998876532 233333333332 1 24555666666654
No 203
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=88.85 E-value=0.62 Score=41.92 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=36.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEE
Q 021491 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMD 77 (311)
Q Consensus 34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d 77 (311)
....+.+...|.||.+.+|+|+|+..|+||.+--+--+....+.
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~Ls 119 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALS 119 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhh
Confidence 34578999999999999999999999999998888644444443
No 204
>PRK11899 prephenate dehydratase; Provisional
Probab=88.73 E-value=3.2 Score=38.34 Aligned_cols=64 Identities=16% Similarity=0.220 Sum_probs=46.1
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
.|.|-+..+|+||.|+++.+.|+.+|+|+..-.-.-. ++...=+|||.- +|.. .+ ..++++|.+
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~~-~d----~~v~~aL~~ 258 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGHP-ED----RNVALALEE 258 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECCC-CC----HHHHHHHHH
Confidence 4666666789999999999999999999987777655 344566899986 3543 23 235555554
No 205
>PRK06382 threonine dehydratase; Provisional
Probab=88.70 E-value=3.5 Score=40.08 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=40.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE----E-cCCEEEEEEEEEe
Q 021491 33 PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS----S-DGRFFMDVFHVTD 83 (311)
Q Consensus 33 ~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~----t-~~g~~~d~f~v~~ 83 (311)
+..+.+.|..+|+||-|.+++..|.++|+||.+.... . ..+...-+|.|..
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet 383 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNV 383 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEe
Confidence 3457889999999999999999999999999987664 1 2355555677754
No 206
>PRK06349 homoserine dehydrogenase; Provisional
Probab=88.43 E-value=1.2 Score=43.64 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=40.5
Q ss_pred ceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEec
Q 021491 246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQF 296 (311)
Q Consensus 246 ~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~ 296 (311)
..+.+.+...|+||.|++|+..|.++|++|.+..-....+....++++++.
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~ 397 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE 397 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence 345799999999999999999999999999988665433345566667763
No 207
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.17 E-value=3.4 Score=32.88 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=37.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEe
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKD 164 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~ 164 (311)
.+.+-+..+|+||-|+++...|+.+|+|+..-.-.... ....-.|+|.-
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 45566666999999999999999999999877666553 33445677775
No 208
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=87.87 E-value=20 Score=35.18 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=28.7
Q ss_pred ceeEEEEEe---CCccchHHHHHHHhhcCCeEEEEEE
Q 021491 246 SYSVVNVQC---KDRTKLLFDVVCTLTDMEYVVFHAT 279 (311)
Q Consensus 246 ~~tvl~v~~---~DRpGLL~~I~~~l~~~gi~I~~A~ 279 (311)
+.+.+.|.+ .++||++++|.++|++.|++|....
T Consensus 377 ~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 377 GLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred CeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 455777755 4889999999999999999998775
No 209
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=87.85 E-value=3.5 Score=38.01 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=47.3
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
..|.+-+..+|+||-|+++.+.|+.+|+|+..-...-.. +-..-+|||.- +|.. .+ ..++++|.+
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~~-~~----~~v~~AL~e 258 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGHI-DD----PLVKEALEE 258 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecCc-Cc----HhHHHHHHH
Confidence 467777888899999999999999999998766665444 45566788876 3443 22 345566555
No 210
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.46 E-value=5.7 Score=29.45 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=25.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE
Q 021491 37 LVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS 69 (311)
Q Consensus 37 ~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~ 69 (311)
.+.|.-||+||=|.+++.+|+ +.||....-.
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~ 33 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYR 33 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEE
Confidence 477889999999999999999 7777744443
No 211
>PRK06545 prephenate dehydrogenase; Validated
Probab=87.42 E-value=0.94 Score=43.23 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=35.5
Q ss_pred CceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC
Q 021491 245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG 284 (311)
Q Consensus 245 ~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g 284 (311)
..++.|.|.-+||||-|++|+..|.+.||||.+.+|.-..
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~ 327 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAR 327 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeecc
Confidence 3567899999999999999999999999999999995433
No 212
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=87.38 E-value=5.9 Score=27.56 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=25.8
Q ss_pred EEEE-eCCcccHHHHHHHHHHhCCCeEEEEEEE
Q 021491 119 LELT-GTDRVGLLSEVFAVLADLQCSVVEAKVW 150 (311)
Q Consensus 119 i~V~-~~DrpGLL~~I~~~L~~~glnI~~A~i~ 150 (311)
|+|. .+|+||.++++.+.|++.|+||......
T Consensus 4 v~v~~~~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 4 ITLRGVPDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred EEECCCCCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 4443 4799999999999999999999855443
No 213
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=86.97 E-value=1.8 Score=41.92 Aligned_cols=50 Identities=4% Similarity=-0.045 Sum_probs=39.0
Q ss_pred eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCe-EEEEEEEEec
Q 021491 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER-AYLVINCYQF 296 (311)
Q Consensus 247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~-a~D~F~v~~~ 296 (311)
.|.|-+..+|+||.|+++...|+..|||+.+..-.-.+.+ -+=.|||.-.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~e 347 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQ 347 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEe
Confidence 5556677789999999999999999999999988844444 5555666444
No 214
>PRK06349 homoserine dehydrogenase; Provisional
Probab=86.40 E-value=3.8 Score=40.12 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=40.4
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164 (311)
Q Consensus 114 ~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~ 164 (311)
...+.|.+...|+||.|++|++.|.++|+||.+.......+....++.++.
T Consensus 346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 345789999999999999999999999999998766554434455666665
No 215
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=86.38 E-value=46 Score=35.51 Aligned_cols=103 Identities=14% Similarity=0.089 Sum_probs=64.2
Q ss_pred eEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCC
Q 021491 35 ATLVKVDSA---RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSN 111 (311)
Q Consensus 35 ~t~V~V~~~---DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~ 111 (311)
...|+|.+. +.||.++++..+|+++|++|.--...+.+. .-.|.+... . .+...+.|++ +.... +-.
T Consensus 317 v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~--sis~~i~~~--~---~~~~~~~l~~-~~~~~--~i~ 386 (810)
T PRK09466 317 VCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQ--LLQLAYTSE--V---ADSALKLLDD-AALPG--ELK 386 (810)
T ss_pred EEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCc--EEEEEEeHH--H---HHHHHHHHHh-hcCCC--cEE
Confidence 345566654 778999999999999999997554332322 223555421 1 1222233332 11111 001
Q ss_pred CCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEE
Q 021491 112 SFNGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEA 147 (311)
Q Consensus 112 ~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A 147 (311)
...+...|.|++. .++|+.+++..+|.+.|+++..-
T Consensus 387 v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 387 LREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred EeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 2346778999984 68999999999999999998543
No 216
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=86.32 E-value=2.1 Score=43.06 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=39.4
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEE
Q 021491 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYV 162 (311)
Q Consensus 113 ~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V 162 (311)
......+-+.-.|+||.++.++..|.++|+||...++... |+.+.-++.+
T Consensus 449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~ 500 (526)
T PRK13581 449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV 500 (526)
T ss_pred eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence 3345556667799999999999999999999999999864 4666655544
No 217
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=86.02 E-value=28 Score=37.32 Aligned_cols=102 Identities=16% Similarity=0.205 Sum_probs=62.3
Q ss_pred eEEEEEE---ecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCC
Q 021491 35 ATLVKVD---SARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSN 111 (311)
Q Consensus 35 ~t~V~V~---~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~ 111 (311)
...|+|. ..+.+|+++++...|+++|++|.-- .+. . .--+|.+.+.+. .......+.+...|..... -.
T Consensus 322 v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~ss-e-~sis~~i~~~~~--~~~~~~~~~l~~~l~~~~~--i~ 393 (861)
T PRK08961 322 IVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSS-E-TNVTVSLDPSEN--LVNTDVLAALSADLSQICR--VK 393 (861)
T ss_pred EEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcC-C-CEEEEEEccccc--cchHHHHHHHHHHHhhcCc--EE
Confidence 4456664 3468999999999999999999744 222 2 112355543221 1011223333333432110 01
Q ss_pred CCCCeEEEEEEeC---CcccHHHHHHHHHHhCCCeE
Q 021491 112 SFNGLTALELTGT---DRVGLLSEVFAVLADLQCSV 144 (311)
Q Consensus 112 ~~~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI 144 (311)
...+...|.|++. .+||+.+++..+|++.|+++
T Consensus 394 ~~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 394 IIVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred EeCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 2235678999985 78999999999999987544
No 218
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=85.92 E-value=71 Score=36.56 Aligned_cols=168 Identities=14% Similarity=0.143 Sum_probs=108.2
Q ss_pred eEEEEecCCCCeEEEEEEecC-C--CcHHHHHHHHHHhC-CceEEEEEE-EEcCCEEEEEEEEEeCCCCC--CCcHHHHH
Q 021491 24 RVVIDNAVCPTATLVKVDSAR-R--HGILLEAVQVLTDL-NLLIKKAYI-SSDGRFFMDVFHVTDLNGNK--LTDESVIS 96 (311)
Q Consensus 24 ~V~~~~~~~~~~t~V~V~~~D-r--pGL~~~i~~~L~~~-glnI~~A~i-~t~~g~~~d~f~v~~~~g~~--~~~~~~~~ 96 (311)
.+.++.++.+.+.-+.|+.|- + ..+-.+|-..|.+. +....+-.. ++.+..+.--|++....+.. ++...+.+
T Consensus 330 Rlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~d~~~le~ 409 (1528)
T PF05088_consen 330 RLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDIDVEALEA 409 (1528)
T ss_pred eEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCCCHHHHHH
Confidence 455566667777777777653 3 34677888877664 334433343 34666777678887665554 33334444
Q ss_pred HHHHHhhh-----------cc---C----------------C-----------------------------CC-CCCCCe
Q 021491 97 YIEQSLET-----------IH---Y----------------G-----------------------------RS-NSFNGL 116 (311)
Q Consensus 97 ~l~~~L~~-----------~~---~----------------r-----------------------------r~-~~~~~~ 116 (311)
.|.++... .. . + ++ ...++.
T Consensus 410 ~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~~~ 489 (1528)
T PF05088_consen 410 RLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGPGR 489 (1528)
T ss_pred HHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCCCe
Confidence 44432221 10 0 0 01 334467
Q ss_pred EEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc---C--ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491 117 TALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH---N--GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD 191 (311)
Q Consensus 117 t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~---~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (311)
+.+.++....+..|+++.-+|..+|+.|.+.+-+.. + ...+.-|++.. ..+...+..+..+.+++.|.++..+.
T Consensus 490 ~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~-~~~~~~~~~~~~~~~~~a~~~v~~g~ 568 (1528)
T PF05088_consen 490 LRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQY-PDGDALDLDDIRERFEEAFEAVWNGR 568 (1528)
T ss_pred EEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEec-CCCccccHHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999999999999887664 2 24677899987 45554444456677888888776554
Q ss_pred C
Q 021491 192 N 192 (311)
Q Consensus 192 ~ 192 (311)
.
T Consensus 569 ~ 569 (1528)
T PF05088_consen 569 A 569 (1528)
T ss_pred C
Confidence 3
No 219
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=85.68 E-value=2.6 Score=35.64 Aligned_cols=37 Identities=8% Similarity=0.191 Sum_probs=33.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-EcC
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS-SDG 72 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~-t~~ 72 (311)
..+.+.-.|.||.++++++.|+..|+||.+-.+. |.+
T Consensus 5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~ 42 (163)
T COG0440 5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTET 42 (163)
T ss_pred EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCC
Confidence 4678889999999999999999999999998887 543
No 220
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=85.62 E-value=9.2 Score=26.12 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=28.1
Q ss_pred EEEEEEe---CCcccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491 117 TALELTG---TDRVGLLSEVFAVLADLQCSVVEAKVWT 151 (311)
Q Consensus 117 t~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~i~T 151 (311)
..|.+.+ ++.||+++++.++|++.|+++......+
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3567776 4889999999999999999997665433
No 221
>PRK08818 prephenate dehydrogenase; Provisional
Probab=85.35 E-value=2.2 Score=40.99 Aligned_cols=49 Identities=12% Similarity=0.015 Sum_probs=37.2
Q ss_pred CeEEEEEEeC-CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491 115 GLTALELTGT-DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164 (311)
Q Consensus 115 ~~t~i~V~~~-DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~ 164 (311)
..+.+.+.-+ |+||-|++++..|+.+|+||.+-++.-.. .....|+|.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r-~~~y~f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTP-AGELHFRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEeccc-CceEEEEEEE
Confidence 3566777776 99999999999999999999998883222 1222288875
No 222
>PLN02551 aspartokinase
Probab=84.13 E-value=26 Score=35.33 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=68.3
Q ss_pred CeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491 115 GLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD 191 (311)
Q Consensus 115 ~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (311)
+.+.|+|.+. +.+|++++|...|+++|++|..-. +. + ..-.|.+.. . .+ ...+.+++.+.+++..
T Consensus 365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sS-e-~sIs~~v~~-~---~~---~~~~~i~~~l~~l~~e- 432 (521)
T PLN02551 365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TS-E-VSISLTLDP-S---KL---WSRELIQQELDHLVEE- 432 (521)
T ss_pred CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--cc-C-CEEEEEEeh-h---Hh---hhhhhHHHHHHHHHHH-
Confidence 4567788655 689999999999999999998762 22 2 223455543 1 11 1112233333222111
Q ss_pred CCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeC--CccchHHHHHHHhh
Q 021491 192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCK--DRTKLLFDVVCTLT 269 (311)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~--DRpGLL~~I~~~l~ 269 (311)
.. + + ..|.+. .+..+|.|.+. .+||++.++-++|+
T Consensus 433 l~-----------------~----------~------------~~V~v~----~~vAiISvVG~~~~~~gvaariF~aLa 469 (521)
T PLN02551 433 LE-----------------K----------I------------AVVNLL----QGRSIISLIGNVQRSSLILEKVFRVLR 469 (521)
T ss_pred hh-----------------c----------C------------CeEEEe----CCEEEEEEEccCCCCccHHHHHHHHHH
Confidence 00 0 0 112221 23556666654 68999999999999
Q ss_pred cCCeEEEEEEEEe
Q 021491 270 DMEYVVFHATINT 282 (311)
Q Consensus 270 ~~gi~I~~A~I~T 282 (311)
+.||||......+
T Consensus 470 ~~gInV~mIsqga 482 (521)
T PLN02551 470 TNGVNVQMISQGA 482 (521)
T ss_pred HCCCCeEEEEecC
Confidence 9999998776544
No 223
>PRK08526 threonine dehydratase; Provisional
Probab=84.10 E-value=23 Score=34.40 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=55.6
Q ss_pred CCcHHHHHHHHHHhhhccCCCCCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-----ceEEEEEEEE
Q 021491 89 LTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-----GRIASLIYVK 163 (311)
Q Consensus 89 ~~~~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-----~~~~d~F~V~ 163 (311)
++...+.+-+++.|.... ....+.|.-+||||-|.+++..+.+.|.||.+-.-.... +.+.-.+.+.
T Consensus 307 id~~~~~~i~~~~l~~~~--------r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e 378 (403)
T PRK08526 307 IDVQMLNIIIEKGLIKSY--------RKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLE 378 (403)
T ss_pred CCHHHHHHHHHHHHHhcC--------CEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEE
Confidence 444445555555554332 467899999999999999999999999999887664431 3333334444
Q ss_pred ecCCCCCCCChHHHHHHHHHHHH
Q 021491 164 DCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 164 ~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
. . ++++.++|.+.|.+
T Consensus 379 ~-~------~~~~~~~~~~~l~~ 394 (403)
T PRK08526 379 T-K------GKEHQEEIRKILTE 394 (403)
T ss_pred e-C------CHHHHHHHHHHHHH
Confidence 3 1 35677777777754
No 224
>PRK08198 threonine dehydratase; Provisional
Probab=83.55 E-value=10 Score=36.67 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=32.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE
Q 021491 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS 69 (311)
Q Consensus 34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~ 69 (311)
....+.|.-+|+||-|++++..++++|.||.+....
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 345789999999999999999999999999988775
No 225
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=82.93 E-value=13 Score=25.70 Aligned_cols=29 Identities=10% Similarity=0.365 Sum_probs=25.3
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCCeEE
Q 021491 117 TALELTGT---DRVGLLSEVFAVLADLQCSVV 145 (311)
Q Consensus 117 t~i~V~~~---DrpGLL~~I~~~L~~~glnI~ 145 (311)
..|.|.+. +.||+++++..+|.+.|+++.
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 35777775 789999999999999999996
No 226
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=82.56 E-value=3 Score=42.02 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=39.3
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEE
Q 021491 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVK 163 (311)
Q Consensus 114 ~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~ 163 (311)
.....+-+.-.|+||.+..++..|.++++||...++... |+.+.-++.+.
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D 500 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD 500 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC
Confidence 344556667799999999999999999999999998865 56666555443
No 227
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.14 E-value=12 Score=24.66 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=30.3
Q ss_pred eCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEe
Q 021491 123 GTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD 164 (311)
Q Consensus 123 ~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~ 164 (311)
.+|.||.++++.+.|.++|++|........ ++...-.|.+..
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence 478999999999999999999977655432 233333455543
No 228
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=81.72 E-value=3 Score=35.04 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=27.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE
Q 021491 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYI 68 (311)
Q Consensus 34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i 68 (311)
+-.++.....+.||+++.+++.++++|++|..+-.
T Consensus 94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 33444444678899999999999999999997654
No 229
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=81.43 E-value=10 Score=36.67 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=39.5
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEe
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD 164 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~ 164 (311)
.+.+-+..+|+||.|+++.+.|+.+|+|+..-.-.-. ++...=.|||.-
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~ 346 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV 346 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence 5556666689999999999999999999987777644 445667888886
No 230
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=81.28 E-value=1.5 Score=44.09 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=33.6
Q ss_pred EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC
Q 021491 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG 284 (311)
Q Consensus 249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g 284 (311)
.++|.|.||.|+..+|...|..++||+....|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 379999999999999999999999999999998865
No 231
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=80.84 E-value=3.1 Score=40.97 Aligned_cols=54 Identities=6% Similarity=-0.055 Sum_probs=41.9
Q ss_pred CCCceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEE--EEEEEec
Q 021491 243 ADRSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYL--VINCYQF 296 (311)
Q Consensus 243 ~s~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D--~F~v~~~ 296 (311)
.+...|.|-+..+|+||-|+++.+.|+++|||+.+..-.-.+..-.+ .|||.-.
T Consensus 27 ~~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E 82 (464)
T TIGR01270 27 EGVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE 82 (464)
T ss_pred CCCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE
Confidence 34445666677799999999999999999999999888766555444 6767654
No 232
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=80.80 E-value=15 Score=35.19 Aligned_cols=47 Identities=15% Similarity=0.119 Sum_probs=36.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-----cCCEEEEEEEEE
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-----DGRFFMDVFHVT 82 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-----~~g~~~d~f~v~ 82 (311)
..+.|..+|+||.|++++..+++.|.||.+-.... ..+.+.-.+.+.
T Consensus 306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~ve 357 (380)
T TIGR01127 306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLE 357 (380)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEE
Confidence 37889999999999999999999999999875542 234554445554
No 233
>PRK09181 aspartate kinase; Validated
Probab=80.76 E-value=44 Score=33.33 Aligned_cols=106 Identities=21% Similarity=0.196 Sum_probs=64.5
Q ss_pred CeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491 115 GLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD 191 (311)
Q Consensus 115 ~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (311)
+.+.|+|.+. +.+|++++|...|+++|++|. .+.+.. ..-.|.+.. . ...++++.+.|...+
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~----~----~~~~~~~~~~L~~~~--- 392 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWG----S----LKTLKRVIAELEKRY--- 392 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcC----C----hHHHHHHHHHHHHhc---
Confidence 4556677543 689999999999999999998 233321 223454543 1 112223322222111
Q ss_pred CCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCC--ccchHHHHHHHhh
Q 021491 192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKD--RTKLLFDVVCTLT 269 (311)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~D--RpGLL~~I~~~l~ 269 (311)
.. ..|+. .+..+|.|.|.. +||+..++-++|+
T Consensus 393 -~~----------------------------------------~~i~~-----~~~a~VsvVG~gm~~~gv~ak~f~aL~ 426 (475)
T PRK09181 393 -PN----------------------------------------AEVTV-----RKVAIVSAIGSNIAVPGVLAKAVQALA 426 (475)
T ss_pred -CC----------------------------------------ceEEE-----CCceEEEEeCCCCCcccHHHHHHHHHH
Confidence 10 01111 235577777654 8999999999999
Q ss_pred cCCeEEEEEEEE
Q 021491 270 DMEYVVFHATIN 281 (311)
Q Consensus 270 ~~gi~I~~A~I~ 281 (311)
+.||||....-.
T Consensus 427 ~~~Ini~~i~qg 438 (475)
T PRK09181 427 EAGINVLALHQS 438 (475)
T ss_pred HCCCCeEEEEec
Confidence 999999665443
No 234
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.58 E-value=16 Score=25.05 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=28.4
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491 117 TALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWT 151 (311)
Q Consensus 117 t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T 151 (311)
..|.+.+. ++||+++++.++|++.|+++......+
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 35677765 789999999999999999997665544
No 235
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=80.51 E-value=62 Score=32.01 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=65.6
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcC
Q 021491 114 NGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKG 190 (311)
Q Consensus 114 ~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~ 190 (311)
.+.+.|+|.+. ..+|.+++|...|.++|+|+..-....... .-.|.+.. .........|.+.+..
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~--~i~~~v~~----------~~~~~a~~~l~~~~~~ 372 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEV--SISFTVPE----------SDAPRALRALLEEKLE 372 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCC--eEEEEEch----------hhHHHHHHHHHHHHhh
Confidence 45667777764 345999999999999999997543332111 14566654 1112333333332211
Q ss_pred CCCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEe---CCccchHHHHHHH
Q 021491 191 DNDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQC---KDRTKLLFDVVCT 267 (311)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~---~DRpGLL~~I~~~ 267 (311)
... .|.++. ...++.+.+ +..||..+++..+
T Consensus 373 ~~~------------------------------------------~v~~~~----~~a~vsiVG~gm~~~~gvaa~~f~a 406 (447)
T COG0527 373 LLA------------------------------------------EVEVEE----GLALVSIVGAGMRSNPGVAARIFQA 406 (447)
T ss_pred hcc------------------------------------------eEEeeC----CeeEEEEEccccccCcCHHHHHHHH
Confidence 110 111111 233455554 5789999999999
Q ss_pred hhcCCeEEEEEE
Q 021491 268 LTDMEYVVFHAT 279 (311)
Q Consensus 268 l~~~gi~I~~A~ 279 (311)
|++.||||....
T Consensus 407 L~~~~ini~~is 418 (447)
T COG0527 407 LAEENINIIMIS 418 (447)
T ss_pred HHhCCCcEEEEE
Confidence 999999999877
No 236
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=80.17 E-value=3.1 Score=29.10 Aligned_cols=28 Identities=14% Similarity=0.118 Sum_probs=24.4
Q ss_pred eCCccchHHHHHHHhhcCCeEEEEEEEE
Q 021491 254 CKDRTKLLFDVVCTLTDMEYVVFHATIN 281 (311)
Q Consensus 254 ~~DRpGLL~~I~~~l~~~gi~I~~A~I~ 281 (311)
.+|+||.++++.++|++.|++|....-.
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 4799999999999999999999866543
No 237
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=80.10 E-value=11 Score=27.83 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=48.7
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc--CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHH
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH--NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNV 187 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~ 187 (311)
.+.+.+.+.++|+.|.++.++....|..+.....++. +|.+---|.|.. ..+ .+.|...|+++
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s---~R~------~~lL~~QLeKl 67 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDS---DRS------VDLLTSQLEKL 67 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcC---CCC------hHHHHHHHHHH
Confidence 5789999999999999999999999999999998886 566655565653 222 25567776654
No 238
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=79.74 E-value=5.1 Score=27.46 Aligned_cols=46 Identities=2% Similarity=-0.056 Sum_probs=32.9
Q ss_pred EEEEEe---CCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEec
Q 021491 249 VVNVQC---KDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQF 296 (311)
Q Consensus 249 vl~v~~---~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~ 296 (311)
++.+.| ++.||++++|.++|++.|+++....-++.+ ..=.|.|...
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~--~~is~~v~~~ 51 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSE--RNISAVIDED 51 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--cEEEEEEeHH
Confidence 566666 488999999999999999999887554422 3333555443
No 239
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.69 E-value=4.3 Score=26.94 Aligned_cols=42 Identities=7% Similarity=0.048 Sum_probs=30.1
Q ss_pred eCCccchHHHHHHHhhcCCeEEEEEEEEecC-CeEEEEEEEEe
Q 021491 254 CKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLVINCYQ 295 (311)
Q Consensus 254 ~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g-~~a~D~F~v~~ 295 (311)
.+|.||++.++..+|++.|++|........+ +...=.|.+.+
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~ 50 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPK 50 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeH
Confidence 4789999999999999999999887553222 22333455544
No 240
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=79.32 E-value=47 Score=32.31 Aligned_cols=65 Identities=15% Similarity=0.094 Sum_probs=44.1
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEE-ccC-ceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW-THN-GRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~-T~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
....+.+.-+||||-|.+++..+...+.||..-+-. ..+ +...-.+-+.. . ++++.+.|.+.|.+
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~-~------~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIEL-N------DKEDFAGLLERMAA 390 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEe-C------CHHHHHHHHHHHHH
Confidence 457899999999999999999777788799966554 222 22322233333 1 24666777777765
No 241
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.21 E-value=5.7 Score=27.36 Aligned_cols=35 Identities=11% Similarity=0.099 Sum_probs=29.0
Q ss_pred eEEEEEeC---CccchHHHHHHHhhcCCeEEEEEEEEe
Q 021491 248 SVVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINT 282 (311)
Q Consensus 248 tvl~v~~~---DRpGLL~~I~~~l~~~gi~I~~A~I~T 282 (311)
+++.+.+. ++||+++++.++|++.|+++....-++
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 35666665 789999999999999999998886655
No 242
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=79.10 E-value=3.6 Score=27.00 Aligned_cols=32 Identities=9% Similarity=0.044 Sum_probs=25.7
Q ss_pred EEEEeC---CccchHHHHHHHhhcCCeEEEEEEEE
Q 021491 250 VNVQCK---DRTKLLFDVVCTLTDMEYVVFHATIN 281 (311)
Q Consensus 250 l~v~~~---DRpGLL~~I~~~l~~~gi~I~~A~I~ 281 (311)
+.|.+. +.||.++++.++|++.|++|.....+
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 3 VSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 445444 48999999999999999999877543
No 243
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=79.07 E-value=4 Score=34.30 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=28.7
Q ss_pred CeEEEEEEe--CCcccHHHHHHHHHHhCCCeEEEEEEE
Q 021491 115 GLTALELTG--TDRVGLLSEVFAVLADLQCSVVEAKVW 150 (311)
Q Consensus 115 ~~t~i~V~~--~DrpGLL~~I~~~L~~~glnI~~A~i~ 150 (311)
+.-++++.. .+.||+++.+++.++++||+|.++-..
T Consensus 92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~~ 129 (167)
T COG2150 92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIISE 129 (167)
T ss_pred CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEecC
Confidence 344555554 678999999999999999999987654
No 244
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=78.34 E-value=21 Score=25.59 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=38.5
Q ss_pred EEEEEEe---CCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 117 TALELTG---TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 117 t~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
+.|++.+ .+.||+++++..+|+++|+++..-. +.+ ..-.|.+.. .....+...+..|.+.|++
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~--~~is~~v~~---~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSE--VSVSLTLDP---TKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCC--cEEEEEEEc---hhhccchHHHHHHHHHHHh
Confidence 3566643 6789999999999999999996542 222 223455554 2221112355566666554
No 245
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=78.18 E-value=7.5 Score=39.17 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=45.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (311)
Q Consensus 34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (311)
.+..+.+..+|+||....+...|++.++||...++.. .++.++-++.+. +. ++ ++..+.|++
T Consensus 451 ~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D---~~-v~-~~~l~~i~~ 514 (526)
T PRK13581 451 EGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD---DP-VP-EEVLEELRA 514 (526)
T ss_pred CceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC---CC-CC-HHHHHHHhc
Confidence 3345566679999999999999999999999999875 557777555553 22 22 446666664
No 246
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.17 E-value=19 Score=24.49 Aligned_cols=46 Identities=15% Similarity=0.243 Sum_probs=32.4
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491 117 TALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164 (311)
Q Consensus 117 t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~ 164 (311)
..|.+.+. +.+|+++++.+.|++.|+++......+.+ ..-.|.+..
T Consensus 2 ~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~ 50 (66)
T cd04924 2 AVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAE 50 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeH
Confidence 35667764 78999999999999999999766554322 222355553
No 247
>PLN02550 threonine dehydratase
Probab=77.79 E-value=79 Score=32.46 Aligned_cols=135 Identities=8% Similarity=0.111 Sum_probs=77.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC------
Q 021491 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY------ 107 (311)
Q Consensus 35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~------ 107 (311)
...+.|.-+||||-|.+++.+|... ||.+-.-.. ..+.+--.+.|.. .+ .+-.+.|...|.....
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~-~~-----~~~~~~i~~~l~~~g~~~~~l~ 488 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV-HT-----EQELQALKKRMESAQLRTVNLT 488 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe-CC-----HHHHHHHHHHHHHCCCCeEeCC
Confidence 3568899999999999999999986 888765543 2233322233322 11 2234445555554321
Q ss_pred -------C-------CCCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCC
Q 021491 108 -------G-------RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIED 173 (311)
Q Consensus 108 -------r-------r~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~ 173 (311)
| |.+. ..--.+.+.-+.|||-|.+++.+|.. ..||..-+=...++....+|.=-. +.
T Consensus 489 ~~~~~~~~LR~v~g~ra~~-~~E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF~YR~~~~~~a~vlvGi~------v~- 559 (591)
T PLN02550 489 SNDLVKDHLRYLMGGRAIV-KDELLYRFVFPERPGALMKFLDAFSP-RWNISLFHYRGQGETGANVLVGIQ------VP- 559 (591)
T ss_pred CChHHhhhhhheecccccc-CceEEEEEEecCcCCHHHHHHHhhCC-CCceeeEEeecCCCCCccEEEEEe------eC-
Confidence 0 2222 33456888899999999999997774 245655444433333333332211 11
Q ss_pred hHHHHHHHHHHHH
Q 021491 174 SQQIDRIEARLRN 186 (311)
Q Consensus 174 ~~~~~~l~~~L~~ 186 (311)
++..+.|.+.|.+
T Consensus 560 ~~e~~~l~~~l~~ 572 (591)
T PLN02550 560 PEEMQEFKSRANA 572 (591)
T ss_pred HHHHHHHHHHHHH
Confidence 1344666666654
No 248
>PRK09084 aspartate kinase III; Validated
Probab=77.77 E-value=55 Score=32.28 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=33.9
Q ss_pred CCeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491 114 NGLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164 (311)
Q Consensus 114 ~~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~ 164 (311)
.+...|+|.+. +.+|+++++...|+++|+||..-.. . + ..-.|.|..
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s--s-e-~sIs~~i~~ 353 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT--S-E-VSVSLTLDT 353 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec--c-C-cEEEEEEec
Confidence 34567777754 6899999999999999999987652 2 1 233566654
No 249
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=76.14 E-value=21 Score=29.20 Aligned_cols=51 Identities=27% Similarity=0.404 Sum_probs=42.4
Q ss_pred CCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc-cCceEEEEEEEEe
Q 021491 114 NGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLIYVKD 164 (311)
Q Consensus 114 ~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T-~~~~~~d~F~V~~ 164 (311)
.+-..+.+.-.||.|.|+++..++++.++||..-+..- ..|++--+..+..
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ 121 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT 121 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc
Confidence 35567888999999999999999999999999877764 4788877776665
No 250
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.25 E-value=5.7 Score=28.89 Aligned_cols=39 Identities=18% Similarity=0.051 Sum_probs=29.5
Q ss_pred eCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEec
Q 021491 254 CKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQF 296 (311)
Q Consensus 254 ~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~ 296 (311)
.+++||++++|-.+|++.||+|.... | ++ ..=.|-|...
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~--~-s~-~~iSftv~~~ 49 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLIT--T-SE-ISVALTLDNT 49 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEe--e-cC-CEEEEEEecc
Confidence 47899999999999999999999884 2 33 3344545443
No 251
>PLN02317 arogenate dehydratase
Probab=74.01 E-value=8.3 Score=37.22 Aligned_cols=40 Identities=8% Similarity=0.127 Sum_probs=33.6
Q ss_pred eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCe
Q 021491 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER 286 (311)
Q Consensus 247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~ 286 (311)
.|.|-+.-+|+||-|+++..+|+.+|||+.+..-.-...+
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~ 322 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKR 322 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCC
Confidence 4666667789999999999999999999999987765444
No 252
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=73.99 E-value=38 Score=38.61 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=64.4
Q ss_pred HHHHhcCC---CeEEEEecC--CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--c-C--CEEEEEEEEEeC
Q 021491 15 KLVIRMNT---PRVVIDNAV--CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--D-G--RFFMDVFHVTDL 84 (311)
Q Consensus 15 ~~~~~~~~---~~V~~~~~~--~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~-~--g~~~d~f~v~~~ 84 (311)
+.+.+..+ ..+.+.... .++.+.+.+|.+.++..|+++.-+|..+|+.|.+.+-+. . + ...+..|.+..+
T Consensus 464 ~~le~l~~~~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~ 543 (1528)
T PF05088_consen 464 ERLESLSGEGPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP 543 (1528)
T ss_pred HHHHhhcCCCCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC
Confidence 34555543 245444322 346789999999999999999999999999999998874 2 2 356777999987
Q ss_pred CCCCCCcHHHHHHHHHHhhh
Q 021491 85 NGNKLTDESVISYIEQSLET 104 (311)
Q Consensus 85 ~g~~~~~~~~~~~l~~~L~~ 104 (311)
.+...+...+.+.+++++..
T Consensus 544 ~~~~~~~~~~~~~~~~a~~~ 563 (1528)
T PF05088_consen 544 DGDALDLDDIRERFEEAFEA 563 (1528)
T ss_pred CCccccHHHHHHHHHHHHHH
Confidence 77655555566666666543
No 253
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=73.91 E-value=33 Score=37.23 Aligned_cols=67 Identities=7% Similarity=0.087 Sum_probs=51.4
Q ss_pred CCCeEEEEecCCC-CeEEEEE---EecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCC
Q 021491 21 NTPRVVIDNAVCP-TATLVKV---DSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGN 87 (311)
Q Consensus 21 ~~~~V~~~~~~~~-~~t~V~V---~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~ 87 (311)
.+|.+.+...+.+ ....+.+ ..+...|+|..++..+..+|+.+..+.+-+ .+|..+-+|+|+...+.
T Consensus 215 ~g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~ 286 (1002)
T PTZ00324 215 VGPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTAD 286 (1002)
T ss_pred CCCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCC
Confidence 4688888765522 3334444 346677899999999999999999999988 57888889999976544
No 254
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=73.75 E-value=16 Score=27.10 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=39.4
Q ss_pred eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec--CCeEEEEEEE
Q 021491 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA--GERAYLVINC 293 (311)
Q Consensus 247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~--g~~a~D~F~v 293 (311)
.+.+++.+.++|+.|.+|.++-.-.|..+....-++. ++++.--|-|
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV 51 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV 51 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE
Confidence 4579999999999999999999999999998887776 6666655533
No 255
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=73.61 E-value=8.6 Score=38.75 Aligned_cols=61 Identities=10% Similarity=0.180 Sum_probs=44.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHH
Q 021491 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQ 100 (311)
Q Consensus 35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~ 100 (311)
+..+.+...|+||...++...|.++++||...++.. .+|.++-++.+. + +++ ++..+.|++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D---~-~v~-~~~l~~i~~ 513 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD---Q-PVP-DEVLEEIKA 513 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC---C-CCC-HHHHHHHhc
Confidence 334556679999999999999999999999988874 567777555553 2 232 446666654
No 256
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.42 E-value=10 Score=25.89 Aligned_cols=47 Identities=15% Similarity=0.019 Sum_probs=33.6
Q ss_pred EEEEEeC---CccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecC
Q 021491 249 VVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFD 297 (311)
Q Consensus 249 vl~v~~~---DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~ 297 (311)
++.+.+. ++||++.++.++|++.|++|.....++.+ ..=.|.+...+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~--~~isf~i~~~~ 52 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSE--YNISFVVAEDD 52 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc--ceEEEEEeHHH
Confidence 4566654 78999999999999999999888665432 22236555543
No 257
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=73.18 E-value=6.6 Score=27.24 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=24.6
Q ss_pred EEEEEeC---CccchHHHHHHHhhcCCeEEE
Q 021491 249 VVNVQCK---DRTKLLFDVVCTLTDMEYVVF 276 (311)
Q Consensus 249 vl~v~~~---DRpGLL~~I~~~l~~~gi~I~ 276 (311)
.+.|.+. ++||++.++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 5667665 899999999999999999995
No 258
>PRK11898 prephenate dehydratase; Provisional
Probab=72.48 E-value=10 Score=35.09 Aligned_cols=49 Identities=2% Similarity=-0.100 Sum_probs=35.9
Q ss_pred eeEEEEEeC-CccchHHHHHHHhhcCCeEEEEEEEEecCCeE-EEEEEEEe
Q 021491 247 YSVVNVQCK-DRTKLLFDVVCTLTDMEYVVFHATINTAGERA-YLVINCYQ 295 (311)
Q Consensus 247 ~tvl~v~~~-DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a-~D~F~v~~ 295 (311)
.|.|-+..+ |+||-|+++...|+++|||+.+..-.-...+. +=.|||.-
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~ 246 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV 246 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE
Confidence 455555554 46999999999999999999998887654443 34565653
No 259
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=72.44 E-value=18 Score=29.58 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=38.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEE
Q 021491 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVT 82 (311)
Q Consensus 35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~ 82 (311)
-.-+.+.-.||.|.|+++..+++..++||+.....- .+|.+--+..+.
T Consensus 72 i~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~ 120 (150)
T COG4492 72 IITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSID 120 (150)
T ss_pred EEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEE
Confidence 345778899999999999999999999999877764 677765555554
No 260
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=72.42 E-value=8 Score=25.20 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=26.2
Q ss_pred EEEEEeCC---cccHHHHHHHHHHhCCCeEEEEEEE
Q 021491 118 ALELTGTD---RVGLLSEVFAVLADLQCSVVEAKVW 150 (311)
Q Consensus 118 ~i~V~~~D---rpGLL~~I~~~L~~~glnI~~A~i~ 150 (311)
.|+|.+.+ .+|.++++.++|++++++|......
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 35666554 8999999999999999999765443
No 261
>PRK08639 threonine dehydratase; Validated
Probab=71.85 E-value=90 Score=30.42 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=42.8
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc-cCceEEEEE-EEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT-HNGRIASLI-YVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T-~~~~~~d~F-~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
....+.+.-+||||-|.+++..+...+.||..-+-.. .+.....++ .+.. .++++.+++.+.|.+
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~-------~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIEL-------KDAEDYDGLIERMEA 401 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence 4678999999999999999997777777998775442 121111222 2222 124677778887765
No 262
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.36 E-value=36 Score=24.60 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=30.9
Q ss_pred EEEE--E-ecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEe
Q 021491 37 LVKV--D-SARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTD 83 (311)
Q Consensus 37 ~V~V--~-~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~ 83 (311)
.|+| . .++.||+++++..+|+.+|+||.--. +.. .--.|.|..
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~--~s~--~~iSftv~~ 48 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT--TSE--ISVALTLDN 48 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe--ecC--CEEEEEEec
Confidence 4555 2 57889999999999999999998553 222 223467754
No 263
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.98 E-value=30 Score=23.47 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=27.9
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491 118 ALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWT 151 (311)
Q Consensus 118 ~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T 151 (311)
.|.+.+. ++||+++++...|++.|+++......+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4667764 789999999999999999998765543
No 264
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=70.08 E-value=26 Score=26.36 Aligned_cols=54 Identities=7% Similarity=-0.013 Sum_probs=40.4
Q ss_pred ceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEEee
Q 021491 246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIYS 305 (311)
Q Consensus 246 ~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~~~ 305 (311)
....+.+...| +....+.|.+.|+++........|.. ..||+.|++|...+.++
T Consensus 61 ~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 61 PGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVFGLWQ 114 (114)
T ss_pred CeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEEEeEC
Confidence 45567777888 67777888999999987654443222 48999999999998753
No 265
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.56 E-value=14 Score=25.25 Aligned_cols=34 Identities=6% Similarity=0.022 Sum_probs=28.1
Q ss_pred EEEEEeC---CccchHHHHHHHhhcCCeEEEEEEEEe
Q 021491 249 VVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATINT 282 (311)
Q Consensus 249 vl~v~~~---DRpGLL~~I~~~l~~~gi~I~~A~I~T 282 (311)
.+.+.|. ++||+++++..+|++.|+++......+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566554 789999999999999999998886644
No 266
>PLN02317 arogenate dehydratase
Probab=69.39 E-value=38 Score=32.76 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=37.9
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCce---------------EEEEEEEEe
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGR---------------IASLIYVKD 164 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~---------------~~d~F~V~~ 164 (311)
.|.|-+.-+|+||-|+++..+|+.+|+|+..-+-.-..+. ..-.|||.-
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~ 346 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDF 346 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEE
Confidence 3666666689999999999999999999987766544322 455888886
No 267
>PRK08841 aspartate kinase; Validated
Probab=68.73 E-value=1.2e+02 Score=29.46 Aligned_cols=112 Identities=13% Similarity=0.168 Sum_probs=66.8
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCCCCCCeEEEEEEeCCc
Q 021491 47 GILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDR 126 (311)
Q Consensus 47 GL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V~~~Dr 126 (311)
+.++++.+.|+.+|+++..-. +....+ .|.+.. . ....++..+.... ....+...|.+.+...
T Consensus 266 ~~~~~i~~~l~~~~i~v~~i~--~~~~~~--~~~v~~--------~-~~~~~~~~~~~~i----~~~~~~a~vsvVG~~~ 328 (392)
T PRK08841 266 ESLPSLTKQCQMLGIEVWNVI--EEADRA--QIVIKQ--------D-ACAKLKLVFDDKI----RNSESVSLLTLVGLEA 328 (392)
T ss_pred chHHHHHHHHHHcCCCEEEEE--ecCCcE--EEEECH--------H-HHHHHHHhCcccE----EEeCCEEEEEEECCCC
Confidence 457899999999998887432 222111 245531 1 1222333222111 1134677899999999
Q ss_pred ccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhc
Q 021491 127 VGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLK 189 (311)
Q Consensus 127 pGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~ 189 (311)
||+.+++..+|.+.|+||..-. + ++ ..-.|.|.. +..++.-+.|++.+.
T Consensus 329 ~gv~~~~~~aL~~~~I~i~~i~--~-s~-~~is~vv~~----------~~~~~av~~lH~~f~ 377 (392)
T PRK08841 329 NGMVEHACNLLAQNGIDVRQCS--T-EP-QSSMLVLDP----------ANVDRAANILHKTYV 377 (392)
T ss_pred hHHHHHHHHHHHhCCCCEEEEE--C-CC-cEEEEEEeH----------HHHHHHHHHHHHHHc
Confidence 9999999999999999995333 2 22 233354543 334555556666553
No 268
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=68.72 E-value=40 Score=24.09 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=24.3
Q ss_pred EEEEE---ecCCCcHHHHHHHHHHhCCceEEEE
Q 021491 37 LVKVD---SARRHGILLEAVQVLTDLNLLIKKA 66 (311)
Q Consensus 37 ~V~V~---~~DrpGL~~~i~~~L~~~glnI~~A 66 (311)
.|++. .++.||+.+++..+|+..|++|..-
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i 35 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI 35 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 45553 3678999999999999999999543
No 269
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=68.48 E-value=13 Score=36.56 Aligned_cols=50 Identities=6% Similarity=-0.067 Sum_probs=38.8
Q ss_pred eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC-CeEEEEEEEEec
Q 021491 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG-ERAYLVINCYQF 296 (311)
Q Consensus 247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g-~~a~D~F~v~~~ 296 (311)
.|.|-+..+|+||-|+++.+.|+++|||+.+..-.-.. ..-+=.|||.-.
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~e 66 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFD 66 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEe
Confidence 46666777999999999999999999999988876543 333345777654
No 270
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=68.00 E-value=9.5 Score=25.41 Aligned_cols=32 Identities=9% Similarity=0.116 Sum_probs=26.1
Q ss_pred EEEEEeC---CccchHHHHHHHhhcCCeEEEEEEE
Q 021491 249 VVNVQCK---DRTKLLFDVVCTLTDMEYVVFHATI 280 (311)
Q Consensus 249 vl~v~~~---DRpGLL~~I~~~l~~~gi~I~~A~I 280 (311)
.|.+.+. +++|+++++..+|++.|+++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4556444 8899999999999999999977654
No 271
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=67.51 E-value=20 Score=24.36 Aligned_cols=40 Identities=13% Similarity=-0.027 Sum_probs=30.6
Q ss_pred eCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecC
Q 021491 254 CKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFD 297 (311)
Q Consensus 254 ~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~ 297 (311)
..++||+.++|-++|++.|+++.... | ++ ..=.|++...+
T Consensus 10 m~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~~~ 49 (62)
T cd04890 10 MNGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDDSL 49 (62)
T ss_pred cCcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEehhh
Confidence 35789999999999999999999883 3 33 44557666554
No 272
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.25 E-value=45 Score=24.08 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=36.8
Q ss_pred CCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 124 ~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
++.||+++++.++|+++|+|+..-.. ++ ..-.|.+.. . ...+.+ +.++.|.+.|.+
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~---s~-~~isftv~~-~-~~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST---SE-TNVTVSLDP-D-PNGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeC-c-ccccch-HHHHHHHHHHHh
Confidence 57899999999999999999987632 22 333455554 1 211322 356667777665
No 273
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=66.66 E-value=34 Score=22.53 Aligned_cols=32 Identities=16% Similarity=0.383 Sum_probs=26.1
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEE
Q 021491 118 ALELTGT---DRVGLLSEVFAVLADLQCSVVEAKV 149 (311)
Q Consensus 118 ~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i 149 (311)
.|++.+. +++|+++++...|++.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4667554 8899999999999999999976544
No 274
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.26 E-value=41 Score=23.28 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=27.7
Q ss_pred EEEEEeC--CcccHHHHHHHHHHhCCCeEEEEEEEcc
Q 021491 118 ALELTGT--DRVGLLSEVFAVLADLQCSVVEAKVWTH 152 (311)
Q Consensus 118 ~i~V~~~--DrpGLL~~I~~~L~~~glnI~~A~i~T~ 152 (311)
.|.+++. ..+|+++++..+|++.|++|......+.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGAS 39 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCc
Confidence 4666664 4689999999999999999976665554
No 275
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=66.04 E-value=1.3e+02 Score=30.28 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=42.3
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
....+.|.-+||||-|.+++.+|.. .||...+-.-.+.....+|..-. +.++++.+.|.+.|.+
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie------~~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQ------LSNPQERQEILARLND 387 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 4567889999999999999999997 46765554433322233443322 1124677888888775
No 276
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=65.46 E-value=11 Score=37.86 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=32.8
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH 152 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~ 152 (311)
.++|.|.||.|+..+|...|..+++|+....|...
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~ 36 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI 36 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC
Confidence 47899999999999999999999999999999765
No 277
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.35 E-value=12 Score=27.12 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=29.0
Q ss_pred eCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEec
Q 021491 254 CKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQF 296 (311)
Q Consensus 254 ~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~ 296 (311)
.++.||++++|-++|++.|++|.... + ++ ..=.|-|...
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~~ 49 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDPD 49 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeCc
Confidence 45889999999999999999999884 2 33 3334444444
No 278
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.88 E-value=33 Score=23.75 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=29.9
Q ss_pred EEEEEec--CCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEE
Q 021491 37 LVKVDSA--RRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVT 82 (311)
Q Consensus 37 ~V~V~~~--DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~ 82 (311)
.|.+.+. ..+|+++++..+|++.|++|......+.+-.+. |.|.
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis--~~v~ 48 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGASKVNIS--LIVN 48 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEE--EEEe
Confidence 3455543 468999999999999999998655544333222 5554
No 279
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=64.81 E-value=24 Score=26.68 Aligned_cols=56 Identities=5% Similarity=-0.011 Sum_probs=38.2
Q ss_pred ceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEEee
Q 021491 246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIYS 305 (311)
Q Consensus 246 ~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~~~ 305 (311)
..+.+.+...|+..+- .+...+.+.|+.|...-.....++ .||++|++|...+.|+
T Consensus 59 ~~~~~~~~v~~~~~~~-~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 59 GGSELAFMVDDGAAVD-ALYAEWQAKGVKIIQEPTEMDFGY---TFVALDPDGHRLRVFA 114 (114)
T ss_pred CceEEEEEcCCHHHHH-HHHHHHHHCCCeEecCccccCCcc---EEEEECCCCCEEEeeC
Confidence 3456777788866664 444555679998876443332233 5899999999998874
No 280
>PRK14646 hypothetical protein; Provisional
Probab=64.76 E-value=83 Score=26.31 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEEcC-CEEEEEEEEEeCCCCCCCcH---HHHHHHHHHhhhccCCCCCCCCCeEEEEEE
Q 021491 47 GILLEAVQVLTDLNLLIKKAYISSDG-RFFMDVFHVTDLNGNKLTDE---SVISYIEQSLETIHYGRSNSFNGLTALELT 122 (311)
Q Consensus 47 GL~~~i~~~L~~~glnI~~A~i~t~~-g~~~d~f~v~~~~g~~~~~~---~~~~~l~~~L~~~~~rr~~~~~~~t~i~V~ 122 (311)
.+...+..++..+|+.+.+..+...+ ++++ ..+|..++|..++-+ .+-+.|...|... +.-++.+.++|.
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~L-rV~IDk~~g~gVtldDC~~vSr~is~~LD~~-----D~i~~~Y~LEVS 81 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVI-KIIIKKTNGDDISLDDCALFNTPASEEIENS-----NLLNCSYVLEIS 81 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEE-EEEEECCCCCCccHHHHHHHHHHHHHHhCcC-----CCCCCCeEEEEc
Confidence 46678889999999999999999865 4555 555554444334322 3444444445432 234567889999
Q ss_pred eCCcccHHHHHHHHHHhCCCeE
Q 021491 123 GTDRVGLLSEVFAVLADLQCSV 144 (311)
Q Consensus 123 ~~DrpGLL~~I~~~L~~~glnI 144 (311)
+|---.-|...-..-...|-.+
T Consensus 82 SPGldRpL~~~~df~r~~G~~v 103 (155)
T PRK14646 82 SQGVSDELTSERDFKTFKGFPV 103 (155)
T ss_pred CCCCCCcCCCHHHHHHhCCCEE
Confidence 8744444666666666666444
No 281
>PRK11898 prephenate dehydratase; Provisional
Probab=64.36 E-value=57 Score=30.07 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=36.1
Q ss_pred eEEEEEEeC-CcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEe
Q 021491 116 LTALELTGT-DRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD 164 (311)
Q Consensus 116 ~t~i~V~~~-DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~ 164 (311)
.+.+-+..+ ++||-|+++.+.|+.+|+|+..-.-.-. +....-.|||.-
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~ 246 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV 246 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE
Confidence 344555554 4699999999999999999987766654 334556788875
No 282
>PRK14634 hypothetical protein; Provisional
Probab=63.85 E-value=72 Score=26.70 Aligned_cols=92 Identities=10% Similarity=0.013 Sum_probs=56.5
Q ss_pred CCcHHHHHHHHHHhCCceEEEEEEEEcC-CEEEEEEEEEeCCCCCCCcH---HHHHHHHHHhhhccCCCCCCCCCeEEEE
Q 021491 45 RHGILLEAVQVLTDLNLLIKKAYISSDG-RFFMDVFHVTDLNGNKLTDE---SVISYIEQSLETIHYGRSNSFNGLTALE 120 (311)
Q Consensus 45 rpGL~~~i~~~L~~~glnI~~A~i~t~~-g~~~d~f~v~~~~g~~~~~~---~~~~~l~~~L~~~~~rr~~~~~~~t~i~ 120 (311)
.+.+...+..++..+|+.+.+..+...+ ++++ ..+|..++|..++-+ .+-+.|...|... +.-+..+.++
T Consensus 6 ~~~i~~l~~~~~~~~G~elvdve~~~~~~~~~l-rV~ID~~~g~~v~lddC~~vSr~is~~LD~~-----d~i~~~Y~LE 79 (155)
T PRK14634 6 LPDLETLASATAADKGFELCGIQVLTHLQPMTL-QVQIRRSSGSDVSLDDCAGFSGPMGEALEAS-----QLLTEAYVLE 79 (155)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEE-EEEEECCCCCcccHHHHHHHHHHHHHHhccc-----ccCCCCeEEE
Confidence 3456777888999999999999998755 5555 455554556334322 3344444445432 2334678899
Q ss_pred EEeCCcccHHHHHHHHHHhCCC
Q 021491 121 LTGTDRVGLLSEVFAVLADLQC 142 (311)
Q Consensus 121 V~~~DrpGLL~~I~~~L~~~gl 142 (311)
|.+|--..-|......-...|-
T Consensus 80 VSSPGldRpL~~~~~f~r~~G~ 101 (155)
T PRK14634 80 ISSPGIGDQLSSDRDFQTFRGF 101 (155)
T ss_pred EeCCCCCCcCCCHHHHHHhCCC
Confidence 9976333335555555555553
No 283
>PRK09224 threonine dehydratase; Reviewed
Probab=63.58 E-value=1.7e+02 Score=29.40 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=72.3
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEE-EEecCCCCCCCChHH-HHHHHHHHHHHhcCCC
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIY-VKDCNSGSPIEDSQQ-IDRIEARLRNVLKGDN 192 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~-V~~~~~g~~~~~~~~-~~~l~~~L~~~L~~~~ 192 (311)
....+.|.-+||||-|.+++..|. +.||..-+-.-.+.....+|. |.. . ++++ .+.|.+.|.+. ....
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~-~------~~~~~~~~i~~~L~~~-gy~~ 396 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQL-S------RGQEERAEIIAQLRAH-GYPV 396 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEe-C------ChhhHHHHHHHHHHHc-CCCe
Confidence 356788999999999999999999 677776554433322233333 332 1 1233 67777777651 1111
Q ss_pred -CcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcC
Q 021491 193 -DIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDM 271 (311)
Q Consensus 193 -~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~ 271 (311)
++. ...+ . +.+- ++.-+ ..++. ....-++.++=+.|||-|-++...|. -
T Consensus 397 ~~ls--~ne~-------~-k~h~-----r~~~g-------~~~~~-------~~~e~~~~~~fPerpGal~~Fl~~l~-~ 446 (504)
T PRK09224 397 VDLS--DDEL-------A-KLHV-----RYMVG-------GRPPK-------PLDERLYRFEFPERPGALLKFLSTLG-T 446 (504)
T ss_pred EECC--CCHH-------H-HHHH-----HhccC-------CCCCC-------CCceEEEEEeCCCCCCHHHHHHHhcC-C
Confidence 111 0101 1 1111 11111 01111 11234788999999999999999777 6
Q ss_pred CeEEEEEEEE
Q 021491 272 EYVVFHATIN 281 (311)
Q Consensus 272 gi~I~~A~I~ 281 (311)
+-||...+=.
T Consensus 447 ~~~It~f~Yr 456 (504)
T PRK09224 447 HWNISLFHYR 456 (504)
T ss_pred CCeeEEEEEc
Confidence 6777776654
No 284
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=63.43 E-value=22 Score=25.46 Aligned_cols=36 Identities=8% Similarity=0.128 Sum_probs=28.5
Q ss_pred EEEEE---eCCccchHHHHHHHhhcCCeEEEEEEEEecC
Q 021491 249 VVNVQ---CKDRTKLLFDVVCTLTDMEYVVFHATINTAG 284 (311)
Q Consensus 249 vl~v~---~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g 284 (311)
.+.|. -.+.+|+++++.++|++.|+++....-++.+
T Consensus 3 ~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~ 41 (80)
T cd04921 3 LINIEGTGMVGVPGIAARIFSALARAGINVILISQASSE 41 (80)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 45664 3478999999999999999999887655444
No 285
>PRK14630 hypothetical protein; Provisional
Probab=62.96 E-value=58 Score=26.88 Aligned_cols=90 Identities=9% Similarity=-0.073 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHHhCCceEEEEEEEEcC-CEEEEEEEEEeCCCCCCCc-HHHHHHHHHHhhhccCCCCCCCCCeEEEEE
Q 021491 44 RRHGILLEAVQVLTDLNLLIKKAYISSDG-RFFMDVFHVTDLNGNKLTD-ESVISYIEQSLETIHYGRSNSFNGLTALEL 121 (311)
Q Consensus 44 DrpGL~~~i~~~L~~~glnI~~A~i~t~~-g~~~d~f~v~~~~g~~~~~-~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V 121 (311)
|...+...+..++..+|+.+.+......+ ++.+ .+++..+.|-.+++ +.+-+.|...|... -+..+.++|
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~l-rV~Id~~~gV~idDC~~vSr~i~~~ld~~-------i~~~Y~LEV 77 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKI-QIVLYKKDSFGVDTLCDLHKMILLILEAV-------LKYNFSLEI 77 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEE-EEEEECCCCCCHHHHHHHHHHHHHHhccc-------CCCCeEEEE
Confidence 44567778889999999999999988754 4544 45554444432221 23344444444322 235677888
Q ss_pred EeCCcccHHHHHHHHHHhCC
Q 021491 122 TGTDRVGLLSEVFAVLADLQ 141 (311)
Q Consensus 122 ~~~DrpGLL~~I~~~L~~~g 141 (311)
.+|-=..-|......-...|
T Consensus 78 SSPGldRpL~~~~df~r~~G 97 (143)
T PRK14630 78 STPGINRKIKSDREFKIFEG 97 (143)
T ss_pred eCCCCCCcCCCHHHHHHhCC
Confidence 87633333455555555555
No 286
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=62.90 E-value=1.7e+02 Score=31.30 Aligned_cols=104 Identities=12% Similarity=0.013 Sum_probs=63.1
Q ss_pred CeEEEEEEeC---CcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCC
Q 021491 115 GLTALELTGT---DRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGD 191 (311)
Q Consensus 115 ~~t~i~V~~~---DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~ 191 (311)
+.+.|+|.+. +.+|.++++..+|+++|+++..-...+. +. .-.|.+.. ...+.+.+.|.+. ...
T Consensus 316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s-~~-sis~~i~~----------~~~~~~~~~l~~~-~~~ 382 (810)
T PRK09466 316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPD-RQ-LLQLAYTS----------EVADSALKLLDDA-ALP 382 (810)
T ss_pred CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCC-Cc-EEEEEEeH----------HHHHHHHHHHHhh-cCC
Confidence 3446677664 7789999999999999999876543322 21 22333332 1223333333321 100
Q ss_pred CCcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeC---CccchHHHHHHHh
Q 021491 192 NDIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCK---DRTKLLFDVVCTL 268 (311)
Q Consensus 192 ~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~---DRpGLL~~I~~~l 268 (311)
..|+++ .+..+|.|.+. .+||+..++..+|
T Consensus 383 -------------------------------------------~~i~v~----~~~a~VsvVG~gm~~~~gv~~~~f~aL 415 (810)
T PRK09466 383 -------------------------------------------GELKLR----EGLALVALVGAGVTRNPLHCHRFYQQL 415 (810)
T ss_pred -------------------------------------------CcEEEe----CCeEEEEEeCCCcccCccHHHHHHHHH
Confidence 011111 23557888774 6899999999999
Q ss_pred hcCCeEEEEE
Q 021491 269 TDMEYVVFHA 278 (311)
Q Consensus 269 ~~~gi~I~~A 278 (311)
++.||++...
T Consensus 416 ~~~~I~ii~~ 425 (810)
T PRK09466 416 KDQPVEFIWQ 425 (810)
T ss_pred HhCCCcEEEE
Confidence 9999988544
No 287
>PRK14636 hypothetical protein; Provisional
Probab=62.76 E-value=85 Score=26.89 Aligned_cols=94 Identities=6% Similarity=-0.063 Sum_probs=56.1
Q ss_pred CCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCc---HHHHHHHHHHhhhccCCCCCCCCCeEEEEE
Q 021491 45 RHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTD---ESVISYIEQSLETIHYGRSNSFNGLTALEL 121 (311)
Q Consensus 45 rpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~---~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V 121 (311)
.+-+...+..++..+|+.+.+..+...++..+-..+|..+++..++- ..+-+.|...|.... .-+..+.++|
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~d-----~i~~~Y~LEV 78 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDELD-----PIEDAYRLEV 78 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccCc-----CCCCCeEEEE
Confidence 44567788899999999999999887654444355554443333432 234444555554321 2456788999
Q ss_pred EeCCcccHHHHHHHHHHhCCCe
Q 021491 122 TGTDRVGLLSEVFAVLADLQCS 143 (311)
Q Consensus 122 ~~~DrpGLL~~I~~~L~~~gln 143 (311)
.+|---.-|..--..-...|-.
T Consensus 79 SSPGldRpL~~~~df~r~~G~~ 100 (176)
T PRK14636 79 SSPGIDRPLTRPKDFADWAGHE 100 (176)
T ss_pred eCCCCCCCCCCHHHHHHhCCCe
Confidence 9764333355555555555543
No 288
>PRK08526 threonine dehydratase; Provisional
Probab=62.29 E-value=72 Score=31.00 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=33.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE
Q 021491 33 PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS 70 (311)
Q Consensus 33 ~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t 70 (311)
.....+.+.-||+||-|.+++..+...+.||.+-.-..
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r 361 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDR 361 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEe
Confidence 34567889999999999999999999999999877643
No 289
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=61.94 E-value=44 Score=22.17 Aligned_cols=31 Identities=16% Similarity=0.362 Sum_probs=25.3
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhCCCeEEEEE
Q 021491 118 ALELTG---TDRVGLLSEVFAVLADLQCSVVEAK 148 (311)
Q Consensus 118 ~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~ 148 (311)
.|+|.+ .+.+|+++++.+.|++.|+++....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 355654 4779999999999999999997665
No 290
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=61.76 E-value=33 Score=33.94 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=38.5
Q ss_pred CCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEE-EEEEEEe
Q 021491 113 FNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIA-SLIYVKD 164 (311)
Q Consensus 113 ~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~-d~F~V~~ 164 (311)
....+.|-+..+|+||-|+++.+.|+.+|+|+..-.-.-.. +... -.|+|.-
T Consensus 28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred CCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 33456666667999999999999999999999866655443 3333 4677875
No 291
>PRK12483 threonine dehydratase; Reviewed
Probab=61.17 E-value=1.9e+02 Score=29.23 Aligned_cols=126 Identities=16% Similarity=0.197 Sum_probs=72.4
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEccC-ceEEEEEEEEecCCCCCCCChHHH-HHHHHHHHHHhcCCC
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTHN-GRIASLIYVKDCNSGSPIEDSQQI-DRIEARLRNVLKGDN 192 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~~-~~~~d~F~V~~~~~g~~~~~~~~~-~~l~~~L~~~L~~~~ 192 (311)
....+.|.-+||||-|.+++..|... ||.+..-.... +.+.-.+.+.. . ++++. +.|.+.|.+ .+..
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~---~----~~~~~~~~i~~~l~~--~g~~ 412 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQT---H----PRHDPRAQLLASLRA--QGFP 412 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEe---C----ChhhhHHHHHHHHHH--CCCC
Confidence 45678999999999999999999988 77765554433 22332223332 1 23454 677777764 1211
Q ss_pred --CcchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhc
Q 021491 193 --DIRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTD 270 (311)
Q Consensus 193 --~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~ 270 (311)
++. ...+ . +.+- +.+-+ ..++ ...+.-++.+.=|.|||=|.++.++|..
T Consensus 413 ~~dls--dne~-------~-k~h~-----r~~~g-------~~~~-------~~~~E~~~~v~iPE~pGa~~~f~~~l~~ 463 (521)
T PRK12483 413 VLDLT--DDEL-------A-KLHI-----RHMVG-------GRAP-------LAHDERLFRFEFPERPGALMKFLSRLGP 463 (521)
T ss_pred eEECC--CCHH-------H-HHHH-----HhccC-------CCCC-------CCCceEEEEEEcCCCCcHHHHHHHHhCC
Confidence 111 1111 0 1111 11110 0111 1123458899999999999999999997
Q ss_pred -CCeEEEEEEE
Q 021491 271 -MEYVVFHATI 280 (311)
Q Consensus 271 -~gi~I~~A~I 280 (311)
.+|.-.+=+.
T Consensus 464 ~~niTeF~YR~ 474 (521)
T PRK12483 464 RWNISLFHYRN 474 (521)
T ss_pred CcceeeeeecC
Confidence 3666655444
No 292
>PRK14645 hypothetical protein; Provisional
Probab=60.51 E-value=1e+02 Score=25.83 Aligned_cols=94 Identities=13% Similarity=0.104 Sum_probs=57.9
Q ss_pred CCCcHHHHHHHHHHhCCceEEEEEEEEcC-CEEEEEEEEEeCCCCCCCcH---HHHHHHHHHhhhccCCCCCCCCCeEEE
Q 021491 44 RRHGILLEAVQVLTDLNLLIKKAYISSDG-RFFMDVFHVTDLNGNKLTDE---SVISYIEQSLETIHYGRSNSFNGLTAL 119 (311)
Q Consensus 44 DrpGL~~~i~~~L~~~glnI~~A~i~t~~-g~~~d~f~v~~~~g~~~~~~---~~~~~l~~~L~~~~~rr~~~~~~~t~i 119 (311)
+...+-..+..++..+|+.+.+..+...+ ++++ ..+|..++|..++-+ .+-+.|...|.... .-++.+.+
T Consensus 7 ~~~~i~~li~~~~~~~G~elvdve~~~~~~~~il-rV~ID~~~~~~v~lddC~~vSr~is~~LD~~d-----~i~~~Y~L 80 (154)
T PRK14645 7 NNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIV-LVRIDRKDEQPVTVEDLERASRALEAELDRLD-----PIEGEYRL 80 (154)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEE-EEEEECCCCCCcCHHHHHHHHHHHHHHhcccc-----cCCCceEE
Confidence 34457778899999999999999998765 4544 455543334334322 34445555554321 23467789
Q ss_pred EEEeCCcccHHHHHHHHHHhCCCe
Q 021491 120 ELTGTDRVGLLSEVFAVLADLQCS 143 (311)
Q Consensus 120 ~V~~~DrpGLL~~I~~~L~~~gln 143 (311)
+|.+|--..-|...-......|-.
T Consensus 81 EVSSPGldRpL~~~~df~r~~G~~ 104 (154)
T PRK14645 81 EVESPGPKRPLFTARHFERFAGLK 104 (154)
T ss_pred EEeCCCCCCCCCCHHHHHHhCCCE
Confidence 999764333366666666666633
No 293
>PRK14640 hypothetical protein; Provisional
Probab=59.58 E-value=96 Score=25.82 Aligned_cols=92 Identities=10% Similarity=-0.007 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEEcC-CEEEEEEEEEeCCCCCCCc-HHHHHHHHHHhhhccCCCCCCCCCeEEEEEEeC
Q 021491 47 GILLEAVQVLTDLNLLIKKAYISSDG-RFFMDVFHVTDLNGNKLTD-ESVISYIEQSLETIHYGRSNSFNGLTALELTGT 124 (311)
Q Consensus 47 GL~~~i~~~L~~~glnI~~A~i~t~~-g~~~d~f~v~~~~g~~~~~-~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V~~~ 124 (311)
-+...+..++..+|+.+.+......+ ++.+ ..+|..++|-.+++ ..+-+.|...|.... .-++.+.++|.+|
T Consensus 7 ~i~~li~p~~~~~G~el~dve~~~~~~~~~l-rV~ID~~~gv~lddC~~vSr~is~~LD~~d-----~i~~~Y~LEVSSP 80 (152)
T PRK14640 7 RLTDLLEAPVVALGFELWGIEFIRAGKHSTL-RVYIDGENGVSVENCAEVSHQVGAIMDVED-----PITEEYYLEVSSP 80 (152)
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEecCCCcEE-EEEEECCCCCCHHHHHHHHHHHHHHhcccc-----cCCCCeEEEEeCC
Confidence 35567788899999999999998754 4544 45554344422211 234455555554322 2346788999987
Q ss_pred CcccHHHHHHHHHHhCCCeE
Q 021491 125 DRVGLLSEVFAVLADLQCSV 144 (311)
Q Consensus 125 DrpGLL~~I~~~L~~~glnI 144 (311)
---.-|...-..-...|-.|
T Consensus 81 Gl~RpL~~~~~f~r~~G~~v 100 (152)
T PRK14640 81 GLDRPLFKVAQFEKYVGQEA 100 (152)
T ss_pred CCCCcCCCHHHHHHhCCCeE
Confidence 44444666666666666544
No 294
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=59.25 E-value=18 Score=25.51 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=25.5
Q ss_pred EEEEEe-CCcccHHHHHHHHHHhCCCeEEEE
Q 021491 118 ALELTG-TDRVGLLSEVFAVLADLQCSVVEA 147 (311)
Q Consensus 118 ~i~V~~-~DrpGLL~~I~~~L~~~glnI~~A 147 (311)
.|+|.+ ++.||.+++|.+.|+++|+||-.-
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 456664 467999999999999999999877
No 295
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.20 E-value=56 Score=22.50 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=22.4
Q ss_pred EEEEEeC---CcccHHHHHHHHHHhCCCeE
Q 021491 118 ALELTGT---DRVGLLSEVFAVLADLQCSV 144 (311)
Q Consensus 118 ~i~V~~~---DrpGLL~~I~~~L~~~glnI 144 (311)
.|.+.+. +.||+++++.++|.+.|+++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4677775 68999999999999987666
No 296
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=58.97 E-value=73 Score=31.37 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=37.4
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEe
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKD 164 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~ 164 (311)
.+.|-+..+|+||-|+++.+.|+.+|+|+..-.-.-. +....-.|+|.-
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~ 65 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF 65 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE
Confidence 4566666799999999999999999999986665543 233445688876
No 297
>PRK14647 hypothetical protein; Provisional
Probab=58.95 E-value=1e+02 Score=25.80 Aligned_cols=91 Identities=19% Similarity=0.142 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhCCceEEEEEEEEcCC-EEEEEEEEEeCCCCCCCc-HHHHHHHHHHhhhccCCCCCCCCCeEEEEEEeCC
Q 021491 48 ILLEAVQVLTDLNLLIKKAYISSDGR-FFMDVFHVTDLNGNKLTD-ESVISYIEQSLETIHYGRSNSFNGLTALELTGTD 125 (311)
Q Consensus 48 L~~~i~~~L~~~glnI~~A~i~t~~g-~~~d~f~v~~~~g~~~~~-~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V~~~D 125 (311)
+-..+..++..+|+.+.+..+...++ +++ ..+|..+.|-.+++ +.+-+.|...|.... .-++.+.++|.+|-
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~l-rV~ID~~~gvslddC~~vSr~is~~LD~~d-----~i~~~Y~LEVSSPG 83 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVL-RLFIDKEGGVNLDDCAEVSRELSEILDVED-----FIPERYTLEVSSPG 83 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEE-EEEEeCCCCCCHHHHHHHHHHHHHHHcccc-----cCCCCeEEEEcCCC
Confidence 55567788999999999999998654 544 44554333432221 234455555554322 23466789999874
Q ss_pred cccHHHHHHHHHHhCCCeE
Q 021491 126 RVGLLSEVFAVLADLQCSV 144 (311)
Q Consensus 126 rpGLL~~I~~~L~~~glnI 144 (311)
--.-|...-..-...|-.|
T Consensus 84 ~~RpL~~~~~f~r~~G~~v 102 (159)
T PRK14647 84 LDRPLKKEADYERYAGRLV 102 (159)
T ss_pred CCCcCCCHHHHHHhCCcEE
Confidence 3333555555555556443
No 298
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.90 E-value=17 Score=24.30 Aligned_cols=30 Identities=7% Similarity=0.074 Sum_probs=25.1
Q ss_pred EEEEe---CCccchHHHHHHHhhcCCeEEEEEE
Q 021491 250 VNVQC---KDRTKLLFDVVCTLTDMEYVVFHAT 279 (311)
Q Consensus 250 l~v~~---~DRpGLL~~I~~~l~~~gi~I~~A~ 279 (311)
+.|.+ .+.||++.++..+|++.|+++....
T Consensus 3 v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 45544 4779999999999999999998775
No 299
>PRK14637 hypothetical protein; Provisional
Probab=58.50 E-value=1e+02 Score=25.67 Aligned_cols=93 Identities=13% Similarity=0.029 Sum_probs=54.3
Q ss_pred cCCCcHHHHHHHHHHhCCceEEEEEEEEcC-CEEEEEEEEEeCCCCCCCc-HHHHHHHHHHhhhccCCCCCCCCCeEEEE
Q 021491 43 ARRHGILLEAVQVLTDLNLLIKKAYISSDG-RFFMDVFHVTDLNGNKLTD-ESVISYIEQSLETIHYGRSNSFNGLTALE 120 (311)
Q Consensus 43 ~DrpGL~~~i~~~L~~~glnI~~A~i~t~~-g~~~d~f~v~~~~g~~~~~-~~~~~~l~~~L~~~~~rr~~~~~~~t~i~ 120 (311)
+---|-+..+..++..+|+.+.+..+...+ ++.+- .+|..+.|-.+++ +.+-+.|...|.... ....+.++
T Consensus 5 ~~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lr-V~ID~~~gV~iddC~~vSr~Is~~LD~~~------~~~~y~LE 77 (151)
T PRK14637 5 KKDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVR-AVIYSAGGVGLDDCARVHRILVPRLEALG------GVRDVFLE 77 (151)
T ss_pred cccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEE-EEEECCCCCCHHHHHHHHHHHHHHhcccc------cccCcEEE
Confidence 344588899999999999999999999855 45553 4444333322211 233344444444321 12346788
Q ss_pred EEeCCcccHHHHHHHHHHhCCC
Q 021491 121 LTGTDRVGLLSEVFAVLADLQC 142 (311)
Q Consensus 121 V~~~DrpGLL~~I~~~L~~~gl 142 (311)
|.+|--..-|-..-..-...|-
T Consensus 78 VSSPGldRpL~~~~~f~r~~G~ 99 (151)
T PRK14637 78 VSSPGIERVIKNAAEFSIFVGE 99 (151)
T ss_pred EeCCCCCCCCCCHHHHHHhCCC
Confidence 8876433335555555555553
No 300
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=58.39 E-value=19 Score=24.06 Aligned_cols=44 Identities=7% Similarity=-0.008 Sum_probs=30.8
Q ss_pred EEEEe---CCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecC
Q 021491 250 VNVQC---KDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFD 297 (311)
Q Consensus 250 l~v~~---~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~ 297 (311)
+.|.+ .+.||++.++...|++.|+++.....+ + ..=.|.|.+.+
T Consensus 3 i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s--~--~~is~~v~~~d 49 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMISTS--E--IKISCLIDEDD 49 (63)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcc--C--ceEEEEEeHHH
Confidence 44543 477999999999999999999877632 2 22236565543
No 301
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=57.87 E-value=2.1e+02 Score=28.70 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=65.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE-cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccC-----
Q 021491 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS-DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHY----- 107 (311)
Q Consensus 34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~----- 107 (311)
....+.|.-|||||-|.+++.+|.. .||..-+-.- ..+.+ .+|......+ .+-.+.|...|.....
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a-~v~vgie~~~-----~~~~~~l~~~L~~~Gy~~~dl 395 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDA-HIFVGVQLSN-----PQERQEILARLNDGGYSVVDL 395 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeE-EEEEEEEeCC-----HHHHHHHHHHHHHcCCCeEEC
Confidence 4456789999999999999999997 5777655543 22332 2333322222 1234445555654321
Q ss_pred ----------C-----CCCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEE
Q 021491 108 ----------G-----RSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW 150 (311)
Q Consensus 108 ----------r-----r~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~ 150 (311)
| |+....+--...+.-|-|||-|-+...+| .-+.||..-+=.
T Consensus 396 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l-~~~~~It~f~Yr 452 (499)
T TIGR01124 396 TDDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTL-QGYWNISLFHYR 452 (499)
T ss_pred CCCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhc-CCCCceeeEEEe
Confidence 1 22122334567888999999888887733 345577666653
No 302
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=56.89 E-value=1.1e+02 Score=25.31 Aligned_cols=92 Identities=16% Similarity=0.088 Sum_probs=51.8
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCc-HHHHHHHHHHhhhccCCCCCCCCCeEEEEEEeCC
Q 021491 47 GILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTD-ESVISYIEQSLETIHYGRSNSFNGLTALELTGTD 125 (311)
Q Consensus 47 GL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~-~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V~~~D 125 (311)
-+-..+..++..+|+.+.+..+...++.-+-..+|....|-.+++ ..+-+.|..+|... +..+..+.++|.+|-
T Consensus 8 ~i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~-----d~i~~~Y~LEVSSPG 82 (154)
T PRK00092 8 QLTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVE-----DPIPGAYTLEVSSPG 82 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc-----cCCCCCeEEEEeCCC
Confidence 355667889999999999999998544333344444333322211 23334444445422 123456789999764
Q ss_pred cccHHHHHHHHHHhCCCe
Q 021491 126 RVGLLSEVFAVLADLQCS 143 (311)
Q Consensus 126 rpGLL~~I~~~L~~~gln 143 (311)
--.-|-..-..-...|-.
T Consensus 83 i~RpL~~~~~f~r~~G~~ 100 (154)
T PRK00092 83 LDRPLKKARDFRRFIGRE 100 (154)
T ss_pred CCCcCCCHHHHHHhCCCe
Confidence 333344444555555533
No 303
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.87 E-value=55 Score=21.67 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=25.3
Q ss_pred EEEEEe---CCcccHHHHHHHHHHhCCCeEEEEE
Q 021491 118 ALELTG---TDRVGLLSEVFAVLADLQCSVVEAK 148 (311)
Q Consensus 118 ~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~ 148 (311)
.|+|.+ .+.||+++++...|++.|+++....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 356654 4779999999999999999997654
No 304
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=56.00 E-value=38 Score=23.76 Aligned_cols=33 Identities=0% Similarity=0.173 Sum_probs=24.0
Q ss_pred HHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCC
Q 021491 53 VQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLN 85 (311)
Q Consensus 53 ~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~ 85 (311)
.......|..++.=.|.|.||+++..+.|..+.
T Consensus 2 ~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 2 PELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred HHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 346778999999999999999999999998654
No 305
>PRK14639 hypothetical protein; Provisional
Probab=54.12 E-value=1.1e+02 Score=25.16 Aligned_cols=88 Identities=14% Similarity=0.090 Sum_probs=52.0
Q ss_pred HHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCc-HHHHHHHHHHhhhccCCCCCCCCCeEEEEEEeCCcccHH
Q 021491 52 AVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTD-ESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLL 130 (311)
Q Consensus 52 i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~-~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V~~~DrpGLL 130 (311)
+-.++..+|+.+.+......++..+-.++|..+.|-.+++ +.+-+.|...|.... .-+..+.++|.+|--..-|
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~~d-----~i~~~Y~LEVSSPGl~RpL 77 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVEP-----PVSGEYFLEVSSPGLERKL 77 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhcccc-----ccCCCeEEEEeCCCCCCcC
Confidence 3467889999999999988655444355554333322211 234455555554322 2346678999987444446
Q ss_pred HHHHHHHHhCCCeE
Q 021491 131 SEVFAVLADLQCSV 144 (311)
Q Consensus 131 ~~I~~~L~~~glnI 144 (311)
...-..-...|-.|
T Consensus 78 ~~~~~f~r~~G~~v 91 (140)
T PRK14639 78 SKIEHFAKSIGELV 91 (140)
T ss_pred CCHHHHHHhCCCEE
Confidence 66666666666554
No 306
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=53.95 E-value=23 Score=24.86 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=30.8
Q ss_pred EEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEe
Q 021491 37 LVKVD-SARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTD 83 (311)
Q Consensus 37 ~V~V~-~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~ 83 (311)
.|+|. .++.||..+++.+.|+++|+||---..+ .+. -.|.+..
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~-~~~---isFtv~~ 46 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS-PEE---VIFTVDG 46 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec-CCC---EEEEEch
Confidence 45555 4567999999999999999999877333 222 3477753
No 307
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=53.45 E-value=25 Score=23.84 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=27.4
Q ss_pred CCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164 (311)
Q Consensus 124 ~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~ 164 (311)
.+++|+.+++.++|+++|+++..- .| ++ ..-.|++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i--~t-~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLI--PT-SE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEE--ec-CC-CEEEEEEeh
Confidence 478999999999999999999866 23 22 334566654
No 308
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=53.28 E-value=11 Score=36.14 Aligned_cols=35 Identities=23% Similarity=0.257 Sum_probs=32.4
Q ss_pred EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecC
Q 021491 250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAG 284 (311)
Q Consensus 250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g 284 (311)
++|.|.||.||..++...|...+||+....|+..|
T Consensus 3 leV~cedRlGltrelLdlLv~r~idl~~iEid~~~ 37 (511)
T COG3283 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG 37 (511)
T ss_pred eEEEehhhhchHHHHHHHHHhcccCccceeecCCC
Confidence 78999999999999999999999999999996555
No 309
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=52.63 E-value=2e+02 Score=30.88 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=26.7
Q ss_pred CeEEEEEEe---CCcccHHHHHHHHHHhCCCeEEEE
Q 021491 115 GLTALELTG---TDRVGLLSEVFAVLADLQCSVVEA 147 (311)
Q Consensus 115 ~~t~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A 147 (311)
+.+.|+|.+ .+.+|++++|.+.|+++|+||..-
T Consensus 321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I 356 (861)
T PRK08961 321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI 356 (861)
T ss_pred CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE
Confidence 455667753 368999999999999999999755
No 310
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=52.04 E-value=83 Score=22.28 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=27.6
Q ss_pred EEEEEEe---CCcccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491 117 TALELTG---TDRVGLLSEVFAVLADLQCSVVEAKVWT 151 (311)
Q Consensus 117 t~i~V~~---~DrpGLL~~I~~~L~~~glnI~~A~i~T 151 (311)
..|++.+ .+.+|+++++.++|++.|+++......+
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 3566754 4789999999999999999997665543
No 311
>PRK14633 hypothetical protein; Provisional
Probab=50.60 E-value=1.5e+02 Score=24.68 Aligned_cols=91 Identities=14% Similarity=0.192 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCc-HHHHHHHHHHhhhccCCCCCCCCCeEEEEEEeCCc
Q 021491 48 ILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTD-ESVISYIEQSLETIHYGRSNSFNGLTALELTGTDR 126 (311)
Q Consensus 48 L~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~-~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V~~~Dr 126 (311)
+-..+..++..+|+.+.+..+...++.++ ..+|..++|-.+++ ..+-+.|...|.... .-++.+.++|.+|--
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~l-rV~ID~~~Gv~lddC~~vSr~i~~~LD~~d-----~i~~~Y~LEVSSPGl 79 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTI-RIFIDHENGVSVDDCQIVSKEISAVFDVED-----PVSGKYILEVSSPGM 79 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEE-EEEEeCCCCCCHHHHHHHHHHHHHHhccCc-----CCCCCeEEEEeCCCC
Confidence 55677889999999999999987666555 44444334432211 234444554554322 234678899998744
Q ss_pred ccHHHHHHHHHHhCCCeE
Q 021491 127 VGLLSEVFAVLADLQCSV 144 (311)
Q Consensus 127 pGLL~~I~~~L~~~glnI 144 (311)
..-|......-...|-.|
T Consensus 80 dRpL~~~~~f~r~~G~~v 97 (150)
T PRK14633 80 NRQIFNIIQAQALVGFNV 97 (150)
T ss_pred CCCCCCHHHHHHhCCCeE
Confidence 444666667777767443
No 312
>PRK14638 hypothetical protein; Provisional
Probab=50.15 E-value=1.5e+02 Score=24.64 Aligned_cols=89 Identities=13% Similarity=0.046 Sum_probs=53.6
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEEcC-CEEEEEEEEEeCCCCCCCc---HHHHHHHHHHhhhccCCCCCCCCCeEEEEEE
Q 021491 47 GILLEAVQVLTDLNLLIKKAYISSDG-RFFMDVFHVTDLNGNKLTD---ESVISYIEQSLETIHYGRSNSFNGLTALELT 122 (311)
Q Consensus 47 GL~~~i~~~L~~~glnI~~A~i~t~~-g~~~d~f~v~~~~g~~~~~---~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V~ 122 (311)
.+-..+..++..+|+.+.+......+ ++.+ ..+|..++|. ++- +.+-+.|...|.... .-++.+.++|.
T Consensus 9 ~i~~~~~~i~~~~G~elvdve~~~~~~~~~l-rV~ID~~~G~-v~lddC~~vSr~is~~LD~~d-----~i~~~Y~LEVS 81 (150)
T PRK14638 9 KVRKEAERIAEEQGLEIFDVQYRRESRGWVL-RIIIDNPVGY-VSVRDCELFSREIERFLDRED-----LIEHSYTLEVS 81 (150)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEecCCCcEE-EEEEECCCCC-cCHHHHHHHHHHHHHHhcccc-----ccCCceEEEEe
Confidence 35566778899999999999998754 5555 4445434442 332 234445555554322 23466789999
Q ss_pred eCCcccHHHHHHHHHHhCCC
Q 021491 123 GTDRVGLLSEVFAVLADLQC 142 (311)
Q Consensus 123 ~~DrpGLL~~I~~~L~~~gl 142 (311)
+|--..-|...-..-...|-
T Consensus 82 SPGldRpL~~~~~f~r~~G~ 101 (150)
T PRK14638 82 SPGLDRPLRGPKDYVRFTGK 101 (150)
T ss_pred CCCCCCCCCCHHHHHHhCCC
Confidence 76433335555555566663
No 313
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.78 E-value=20 Score=26.29 Aligned_cols=42 Identities=12% Similarity=0.002 Sum_probs=31.8
Q ss_pred eCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCC
Q 021491 254 CKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSN 299 (311)
Q Consensus 254 ~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~ 299 (311)
.++.||++++|-++|++.|++|.... | ++ ..=.|-|...+..
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~sd~~ 52 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDPSKLW 52 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEhhhhh
Confidence 46889999999999999999999884 2 33 4455666655543
No 314
>PRK05925 aspartate kinase; Provisional
Probab=49.58 E-value=2.7e+02 Score=27.46 Aligned_cols=92 Identities=13% Similarity=0.098 Sum_probs=57.4
Q ss_pred CCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCCCCCCeEEEEEEeC
Q 021491 45 RHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGT 124 (311)
Q Consensus 45 rpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V~~~ 124 (311)
.+|.++++...|+++|++|.-.. .+.. --.|.+...+- . ....+.|...+..... -....+...|.|++.
T Consensus 311 ~~~~~~~if~~l~~~~I~vd~i~-s~~~---sis~~i~~~~~---~-~~~~~~l~~~l~~~~~--i~~~~~~a~VsvVG~ 380 (440)
T PRK05925 311 GLVRLEDVLGILRSLGIVPGLVM-AQNL---GVYFTIDDDDI---S-EEYPQHLTDALSAFGT--VSCEGPLALITMIGA 380 (440)
T ss_pred chhHHHHHHHHHHHcCCcEEEEe-ccCC---EEEEEEechhc---c-HHHHHHHHHHhcCCce--EEEECCEEEEEEeCC
Confidence 46789999999999999996431 1221 22366653211 1 2233333333332110 012346778899985
Q ss_pred C--cccHHHHHHHHHHhCCCeEEE
Q 021491 125 D--RVGLLSEVFAVLADLQCSVVE 146 (311)
Q Consensus 125 D--rpGLL~~I~~~L~~~glnI~~ 146 (311)
. .+|+.+++..+|.+.|+||..
T Consensus 381 gm~~~~v~~~~~~aL~~~~Ini~~ 404 (440)
T PRK05925 381 KLASWKVVRTFTEKLRGYQTPVFC 404 (440)
T ss_pred CcccccHHHHHHHHHhhCCCCEEE
Confidence 2 478999999999999999965
No 315
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=49.56 E-value=1.2e+02 Score=29.43 Aligned_cols=37 Identities=19% Similarity=0.050 Sum_probs=30.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE
Q 021491 33 PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS 69 (311)
Q Consensus 33 ~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~ 69 (311)
.....+.+.-|||||-|.+++..+...+.||..-+-.
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 3456788999999999999999777788899955544
No 316
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.96 E-value=19 Score=26.42 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=27.7
Q ss_pred CCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEe
Q 021491 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKD 164 (311)
Q Consensus 124 ~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~ 164 (311)
++.||++++|..+|+++|+||..-. + ++ ..-.|.+..
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~--q-s~-~sISftV~~ 48 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVA--T-SE-VSISLTLDP 48 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--e-cC-CEEEEEEEh
Confidence 6889999999999999999998663 2 22 333455554
No 317
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.08 E-value=36 Score=23.49 Aligned_cols=27 Identities=7% Similarity=-0.046 Sum_probs=22.0
Q ss_pred EEEEEeC---CccchHHHHHHHhhcCCeEE
Q 021491 249 VVNVQCK---DRTKLLFDVVCTLTDMEYVV 275 (311)
Q Consensus 249 vl~v~~~---DRpGLL~~I~~~l~~~gi~I 275 (311)
++.+.|. +.||+++++.++|.+.|+++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4566664 78999999999999987776
No 318
>PRK14632 hypothetical protein; Provisional
Probab=47.04 E-value=1.8e+02 Score=24.82 Aligned_cols=91 Identities=16% Similarity=0.108 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCc-HHHHHHHHHHhhhccCCCCCCCCCeEEEEEEeCCc
Q 021491 48 ILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTD-ESVISYIEQSLETIHYGRSNSFNGLTALELTGTDR 126 (311)
Q Consensus 48 L~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~-~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V~~~Dr 126 (311)
+...+..++..+|+.+.+..+...+++++ ..+|..+.|-.+++ ..+-+.|...|.... .-+..+.++|.+|--
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~~~~~~l-rV~ID~~~GV~ldDC~~vSr~is~~LD~~d-----~i~~~Y~LEVSSPGl 83 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSYGGRTVV-RLFVDGPEGVTIDQCAEVSRHVGLALEVED-----VISSAYVLEVSSPGL 83 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEE-EEEEECCCCCCHHHHHHHHHHHHHHhcccc-----cCCCCeEEEEeCCCC
Confidence 55667788999999999999775444444 44454333432221 234455555554322 234667899997643
Q ss_pred ccHHHHHHHHHHhCCCeE
Q 021491 127 VGLLSEVFAVLADLQCSV 144 (311)
Q Consensus 127 pGLL~~I~~~L~~~glnI 144 (311)
-.-|...-..-...|-.|
T Consensus 84 dRpL~~~~~f~r~iG~~V 101 (172)
T PRK14632 84 ERPFFRAEQMSPYVGRQI 101 (172)
T ss_pred CCcCCCHHHHHHhCCCEE
Confidence 333566666666666433
No 319
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=46.25 E-value=77 Score=23.78 Aligned_cols=55 Identities=11% Similarity=0.098 Sum_probs=39.1
Q ss_pred eEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCe-EEEEEEEEecCCCeeEEee
Q 021491 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGER-AYLVINCYQFDSNYCCIYS 305 (311)
Q Consensus 248 tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~-a~D~F~v~~~~g~~~~~~~ 305 (311)
..+.+...+. +..+.+.|.+.|+.+...-....|.. ....||++|++|....+.+
T Consensus 69 ~hi~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 69 DDLCLITEPP---IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred ceEEEEeccc---HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 3455566554 78889999999999876655443322 2367999999999887654
No 320
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=46.13 E-value=39 Score=28.29 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=38.5
Q ss_pred eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEec---CCe--EEEEEEEE
Q 021491 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTA---GER--AYLVINCY 294 (311)
Q Consensus 247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~---g~~--a~D~F~v~ 294 (311)
...++|.-+|+||=|-.+.+=|+..|.||....=+.. |++ +.=+|-..
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 4568999999999999999999999999988766554 555 56666544
No 321
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.47 E-value=1.9e+02 Score=24.18 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=54.4
Q ss_pred CCcHHHHHHHHHHhCCceEEEEEEEEcC-CEEEEEEEEEeCCCCCCCc-HHHHHHHHHHhhhccCCCCCCCCCeEEEEEE
Q 021491 45 RHGILLEAVQVLTDLNLLIKKAYISSDG-RFFMDVFHVTDLNGNKLTD-ESVISYIEQSLETIHYGRSNSFNGLTALELT 122 (311)
Q Consensus 45 rpGL~~~i~~~L~~~glnI~~A~i~t~~-g~~~d~f~v~~~~g~~~~~-~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V~ 122 (311)
-..++.-+-.++..+|+.+.+..+...+ ++++-+| +..+.|-.+++ +.+-+.+...|... ++-.+.+.++|.
T Consensus 7 ~~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~-id~~g~v~lddC~~vSr~is~~LD~e-----dpi~~~Y~LEVS 80 (153)
T COG0779 7 TEKVTELIEPVVESLGFELVDVEFVKEGRDSVLRIY-IDKEGGVTLDDCADVSRAISALLDVE-----DPIEGAYFLEVS 80 (153)
T ss_pred HHHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEE-eCCCCCCCHHHHHHHHHHHHHHhccC-----CcccccEEEEee
Confidence 3457778888999999999999999866 5666444 33232222221 33444455555422 223467889999
Q ss_pred eC--CcccHHHHHHHHHHhCCC
Q 021491 123 GT--DRVGLLSEVFAVLADLQC 142 (311)
Q Consensus 123 ~~--DrpGLL~~I~~~L~~~gl 142 (311)
+| ||| |......-...|-
T Consensus 81 SPGldRp--L~~~~~f~r~~G~ 100 (153)
T COG0779 81 SPGLDRP--LKTAEHFARFIGE 100 (153)
T ss_pred CCCCCCC--cCCHHHHHHhcCc
Confidence 76 676 4444444444553
No 322
>PRK08639 threonine dehydratase; Validated
Probab=43.09 E-value=1.6e+02 Score=28.62 Aligned_cols=37 Identities=19% Similarity=0.042 Sum_probs=30.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE
Q 021491 33 PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYIS 69 (311)
Q Consensus 33 ~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~ 69 (311)
.....+.+.-|||||-|.+++..+...+.||..-+-.
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~ 370 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYL 370 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 3456788999999999999999777777799977544
No 323
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=42.46 E-value=1.3e+02 Score=21.60 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=34.6
Q ss_pred CCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHH
Q 021491 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRN 186 (311)
Q Consensus 124 ~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~ 186 (311)
.-.||+++++.+.|+++|+|+..--. ++ ..-.|.+.. ..+.+ +.++.|.+.|.+
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~~---s~-~~isftv~~----~~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIST---SE-VHVSMALHM----ENAED-TNLDAAVKDLQK 65 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEEe---CC-CEEEEEEeh----hhcCh-HHHHHHHHHHHH
Confidence 35699999999999999999986632 22 223454443 12211 255667666665
No 324
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=41.94 E-value=1.1e+02 Score=22.76 Aligned_cols=51 Identities=14% Similarity=0.001 Sum_probs=36.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCC
Q 021491 33 PTATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKL 89 (311)
Q Consensus 33 ~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~ 89 (311)
.....+.+...| +......|.+.|++|...-....++. ..|++.||+|..+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 455667788887 66777788899999986644333222 3699999999854
No 325
>PRK00907 hypothetical protein; Provisional
Probab=41.39 E-value=1.6e+02 Score=22.44 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=36.7
Q ss_pred eEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc----cCceEEEEEEEEe
Q 021491 116 LTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT----HNGRIASLIYVKD 164 (311)
Q Consensus 116 ~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T----~~~~~~d~F~V~~ 164 (311)
.+-+.|.|.++++|...|..++..+.-......+.. .|....-++.|..
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a 69 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA 69 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE
Confidence 478999999999999999999999987766666643 2444444555554
No 326
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=40.71 E-value=1.4e+02 Score=21.80 Aligned_cols=54 Identities=7% Similarity=-0.061 Sum_probs=34.8
Q ss_pred CceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEEe
Q 021491 245 RSYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIY 304 (311)
Q Consensus 245 ~~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~~ 304 (311)
.....+.+...| +..+.+.+.+.|+.+..--.....+ .-.||+.|++|...+.+
T Consensus 55 ~~~~~~~~~v~d----v~~~~~~l~~~G~~~~~~~~~~~~g--~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 55 GGGFHLCFEVED----VDALYERLKELGAEIVTEPRDDPWG--QRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp SSEEEEEEEESH----HHHHHHHHHHTTSEEEEEEEEETTS--EEEEEEE-TTS-EEEEE
T ss_pred CceeEEEEEEcC----HHHHHHHHHHCCCeEeeCCEEcCCC--eEEEEEECCCCCEEEeC
Confidence 355566777755 4445556677799987754444333 36899999999998864
No 327
>PLN02550 threonine dehydratase
Probab=39.97 E-value=4.4e+02 Score=27.17 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=77.2
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEcc-CceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHhcCCCC
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWTH-NGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVLKGDND 193 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~ 193 (311)
....+.|.-+||||-|.+++..|... ||.+.+-.-. .+.+.-.+-|.. . ++++.+.|.+.|.+.=-...+
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~-~------~~~~~~~i~~~l~~~g~~~~~ 486 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVGV-H------TEQELQALKKRMESAQLRTVN 486 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEEe-C------CHHHHHHHHHHHHHCCCCeEe
Confidence 34678899999999999999999986 6765544332 233333333443 1 256778888887752001112
Q ss_pred cchhhhhhhhccccchhhhhhhhhcccccccccccCCCCCCCEEEEEcCCCCceeEEEEEeCCccchHHHHHHHhhcC-C
Q 021491 194 IRSAKMTVSMAVTHTERRLHQMMFADRDYERMPVLRHSTDYPVVTVQNWADRSYSVVNVQCKDRTKLLFDVVCTLTDM-E 272 (311)
Q Consensus 194 ~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~V~id~~~s~~~tvl~v~~~DRpGLL~~I~~~l~~~-g 272 (311)
+. ...+ ++ .|++ ..-+ --.. + ...-++.+.=+.|||-|.++.++|... +
T Consensus 487 l~--~~~~--~~----~~LR-------~v~g--------~ra~--~-----~~E~l~~v~fPErpGAl~~Fl~~lg~~~n 536 (591)
T PLN02550 487 LT--SNDL--VK----DHLR-------YLMG--------GRAI--V-----KDELLYRFVFPERPGALMKFLDAFSPRWN 536 (591)
T ss_pred CC--CChH--Hh----hhhh-------heec--------cccc--c-----CceEEEEEEecCcCCHHHHHHHhhCCCCc
Confidence 21 1101 11 1111 1110 0011 1 234478999999999999999998873 6
Q ss_pred eEEEEEEEEecCCeEEEEE
Q 021491 273 YVVFHATINTAGERAYLVI 291 (311)
Q Consensus 273 i~I~~A~I~T~g~~a~D~F 291 (311)
|.-.+=+ -.|+.--.+|
T Consensus 537 ITeF~YR--~~~~~~a~vl 553 (591)
T PLN02550 537 ISLFHYR--GQGETGANVL 553 (591)
T ss_pred eeeEEee--cCCCCCccEE
Confidence 6655555 3344333344
No 328
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=39.64 E-value=29 Score=24.96 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=22.5
Q ss_pred CCccchHHHHHHHhhcCCeEEEEEE
Q 021491 255 KDRTKLLFDVVCTLTDMEYVVFHAT 279 (311)
Q Consensus 255 ~DRpGLL~~I~~~l~~~gi~I~~A~ 279 (311)
.-.||++++|-++|++.|++|....
T Consensus 12 ~~~~g~~~~If~~la~~~I~vd~I~ 36 (73)
T cd04934 12 SLSHGFLARIFAILDKYRLSVDLIS 36 (73)
T ss_pred ccccCHHHHHHHHHHHcCCcEEEEE
Confidence 4569999999999999999999884
No 329
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=39.09 E-value=78 Score=22.00 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=26.8
Q ss_pred eEEEEEeC--CccchHHHHHHHhhcCCeEEEEEEEEe
Q 021491 248 SVVNVQCK--DRTKLLFDVVCTLTDMEYVVFHATINT 282 (311)
Q Consensus 248 tvl~v~~~--DRpGLL~~I~~~l~~~gi~I~~A~I~T 282 (311)
.++.+.+. -+||++.++.++|.+.|+++......+
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~ 39 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSM 39 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecC
Confidence 35566553 368999999999999999997655443
No 330
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=37.29 E-value=70 Score=23.97 Aligned_cols=52 Identities=12% Similarity=0.069 Sum_probs=35.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCC
Q 021491 34 TATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKL 89 (311)
Q Consensus 34 ~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~ 89 (311)
+...+.+...|+..+ ..+...+..+|.+|...-.....|+ .+++.||+|+.+
T Consensus 59 ~~~~~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPdGn~i 110 (114)
T cd07261 59 GGSELAFMVDDGAAV-DALYAEWQAKGVKIIQEPTEMDFGY---TFVALDPDGHRL 110 (114)
T ss_pred CceEEEEEcCCHHHH-HHHHHHHHHCCCeEecCccccCCcc---EEEEECCCCCEE
Confidence 455677777775555 5566667789999986443333343 478999999854
No 331
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=35.83 E-value=1.2e+02 Score=22.21 Aligned_cols=52 Identities=10% Similarity=-0.042 Sum_probs=35.0
Q ss_pred eeEEEEEeCCccchHHHHHHHhhcCCeE-EEEEEEEecCCeEEEEEEEEecCCCeeEEe
Q 021491 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYV-VFHATINTAGERAYLVINCYQFDSNYCCIY 304 (311)
Q Consensus 247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~-I~~A~I~T~g~~a~D~F~v~~~~g~~~~~~ 304 (311)
...+.+.+.| +..+.+.+.++|+. +...-....++ ...+|+.|++|..++.+
T Consensus 59 ~~~~~~~~~~----~~~~~~~l~~~G~~~~~~~~~~~~~g--~~~~~~~DP~G~~ie~~ 111 (112)
T cd08349 59 GGSVYIEVED----VDALYAELKAKGADLIVYPPEDQPWG--MREFAVRDPDGNLLRFG 111 (112)
T ss_pred cEEEEEEeCC----HHHHHHHHHHcCCcceecCccCCCcc--cEEEEEECCCCCEEEec
Confidence 3356677777 77788888999998 33222222222 35678999999998865
No 332
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=35.77 E-value=1.8e+02 Score=21.57 Aligned_cols=52 Identities=4% Similarity=0.001 Sum_probs=35.7
Q ss_pred eEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEEee
Q 021491 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIYS 305 (311)
Q Consensus 248 tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~~~ 305 (311)
..+.+...| +..+.+.|.+.|+.+..-...+.. -.-.||+.|++|...++.+
T Consensus 59 ~~i~~~v~d----~~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~~DP~Gn~i~~~~ 110 (112)
T cd07238 59 PDLSIEVDD----VDAALARAVAAGFAIVYGPTDEPW--GVRRFFVRDPFGKLVNILT 110 (112)
T ss_pred CEEEEEeCC----HHHHHHHHHhcCCeEecCCccCCC--ceEEEEEECCCCCEEEEEE
Confidence 356667777 456667788899998754332221 1246999999999998764
No 333
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.45 E-value=1.6e+02 Score=19.90 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEEEeC---CcccHHHHHHHHHHhCC
Q 021491 117 TALELTGT---DRVGLLSEVFAVLADLQ 141 (311)
Q Consensus 117 t~i~V~~~---DrpGLL~~I~~~L~~~g 141 (311)
..|.+.+. ++||+++++..+|.+.+
T Consensus 2 alIsvvG~~~~~~~~v~~~i~~~L~~i~ 29 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALEDIN 29 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHhCC
Confidence 35777775 78999999999997644
No 334
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=31.00 E-value=68 Score=31.09 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=31.1
Q ss_pred EEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491 118 ALELTGTDRVGLLSEVFAVLADLQCSVVEAKVWT 151 (311)
Q Consensus 118 ~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~T 151 (311)
.++|.|.||.||..++...|...++|+..-.|..
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~ 35 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDP 35 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecC
Confidence 4789999999999999999999999999888843
No 335
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=30.89 E-value=63 Score=27.13 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=29.0
Q ss_pred CeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEE
Q 021491 115 GLTALELTGTDRVGLLSEVFAVLADLQCSVVEA 147 (311)
Q Consensus 115 ~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A 147 (311)
....+.|.-+|+||-|-.+..=|+..|.||..-
T Consensus 4 mritldIEL~D~PGQLl~vLqPls~~g~NiItI 36 (170)
T COG2061 4 MRITLDIELKDKPGQLLKVLQPLSKTGANIITI 36 (170)
T ss_pred eEEEEEEEecCCCcchhhhhcchhhcCccEEEE
Confidence 346788899999999999999999999999754
No 336
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=30.56 E-value=1.9e+02 Score=20.04 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=26.6
Q ss_pred EEEEEEeC--CcccHHHHHHHHHHhCCCeEEEEEEE
Q 021491 117 TALELTGT--DRVGLLSEVFAVLADLQCSVVEAKVW 150 (311)
Q Consensus 117 t~i~V~~~--DrpGLL~~I~~~L~~~glnI~~A~i~ 150 (311)
..|.+++. .+||+++++.++|.+.|+++......
T Consensus 3 a~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~ 38 (66)
T cd04915 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQS 38 (66)
T ss_pred EEEEEECCCCCcchHHHHHHHHHHHCCCCEEEEEec
Confidence 45677764 36899999999999999999755443
No 337
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=30.40 E-value=2.2e+02 Score=20.84 Aligned_cols=50 Identities=10% Similarity=-0.100 Sum_probs=35.5
Q ss_pred EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEEee
Q 021491 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIYS 305 (311)
Q Consensus 249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~~~ 305 (311)
.+.+...| +.++.+.+.+.|+.+..-.. +.+. -..||++|++|......+
T Consensus 70 ~~~~~v~d----i~~~~~~l~~~g~~~~~~~~-~~~~--~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 70 GLVLATDD----IDATYEELKARGVEFSEEPR-EMPY--GTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred EEEEEehH----HHHHHHHHHhCCCEEeeccc-cCCC--ceEEEEECCCCCEEEEeC
Confidence 45556666 67777778889998886552 2221 368999999999987653
No 338
>PRK08841 aspartate kinase; Validated
Probab=29.00 E-value=79 Score=30.62 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=29.9
Q ss_pred ceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEE
Q 021491 246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHAT 279 (311)
Q Consensus 246 ~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~ 279 (311)
+..++.+.+...||+.+++.++|.+.||+|....
T Consensus 317 ~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i~ 350 (392)
T PRK08841 317 SVSLLTLVGLEANGMVEHACNLLAQNGIDVRQCS 350 (392)
T ss_pred CEEEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 4668999999999999999999999999995543
No 339
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=28.63 E-value=1.6e+02 Score=23.62 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCCceeEEEEEeC---CccchHHHHHHHhhcCCeEEEEE
Q 021491 232 TDYPVVTVQNWADRSYSVVNVQCK---DRTKLLFDVVCTLTDMEYVVFHA 278 (311)
Q Consensus 232 ~~~~~V~id~~~s~~~tvl~v~~~---DRpGLL~~I~~~l~~~gi~I~~A 278 (311)
.+|..|+++ .....+.++++ |-+|+|+.|.+.|++.||-|.-.
T Consensus 52 ~vp~~V~~~----~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFav 97 (128)
T COG3603 52 RVPDVVQIE----KGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAV 97 (128)
T ss_pred cCCcceEec----CCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEE
Confidence 355656543 34456777666 99999999999999999999754
No 340
>PRK00907 hypothetical protein; Provisional
Probab=28.13 E-value=2.5e+02 Score=21.37 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=44.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEE----cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhc
Q 021491 36 TLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISS----DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETI 105 (311)
Q Consensus 36 t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t----~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~ 105 (311)
+-+.|.+.+.+++...|..++..+.-+.....+.. .|.|..-++.|.-. +...++.|-++|...
T Consensus 18 fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~at------s~eQld~iY~~L~~~ 85 (92)
T PRK00907 18 FELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAE------SREQYDAAHQALRDH 85 (92)
T ss_pred CeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEEC------CHHHHHHHHHHHhhC
Confidence 67999999999999999999999887766666642 44555555555521 233456666677543
No 341
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=27.31 E-value=2.5e+02 Score=21.15 Aligned_cols=54 Identities=11% Similarity=-0.033 Sum_probs=33.9
Q ss_pred eEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEEee
Q 021491 248 SVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIYS 305 (311)
Q Consensus 248 tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~~~ 305 (311)
..+-....|+..+ .++...|...|+.+....-. .+ --..||+.|++|.....+-
T Consensus 64 ~h~af~v~~~~~v-~~~~~~l~~~G~~~~~~~~~-~~--~~~~~~~~DPdG~~iEl~~ 117 (121)
T cd09013 64 GHIAWRASSPEAL-ERRVAALEASGLGIGWIEGD-PG--HGKAYRFRSPDGHPMELYW 117 (121)
T ss_pred EEEEEEcCCHHHH-HHHHHHHHHcCCccccccCC-CC--CcceEEEECCCCCEEEEEE
Confidence 3455555555544 45557788899987432211 11 1236899999999988774
No 342
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=25.16 E-value=2.4e+02 Score=20.88 Aligned_cols=52 Identities=13% Similarity=0.034 Sum_probs=35.2
Q ss_pred eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEEe
Q 021491 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIY 304 (311)
Q Consensus 247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~~ 304 (311)
...+.+...| +.++.+.+.+.|+.+..-..... .....||+.|++|...-+|
T Consensus 73 ~~h~~~~v~d----~~~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~~DP~G~~iEl~ 124 (125)
T cd08352 73 LRHLAFSVED----IEAAVKHLKAKGVEVEPIRVDEF--TGKRFTFFYDPDGLPLELY 124 (125)
T ss_pred ceEEEEEeCC----HHHHHHHHHHcCCccccccccCC--CceEEEEEECCCCCEEEec
Confidence 3456677777 56677888889998876322212 2234689999999887665
No 343
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=24.40 E-value=1.4e+02 Score=21.54 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=33.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCC
Q 021491 35 ATLVKVDSARRHGILLEAVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKL 89 (311)
Q Consensus 35 ~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~ 89 (311)
...+.+..+| +..+...|...|+.+....-. ..+ ...|++.||+|..+
T Consensus 65 ~~~~~~~v~d----~~~~~~~l~~~g~~~~~~~~~-~~~--~~~~~~~DP~G~~i 112 (114)
T cd07245 65 DDHIAFRVDD----LDAFRARLKAAGVPYTESDVP-GDG--VRQLFVRDPDGNRI 112 (114)
T ss_pred cceEEEEeCC----HHHHHHHHHHcCCCcccccCC-CCC--ccEEEEECCCCCEE
Confidence 3456677777 678889999999998754321 122 23578999999854
No 344
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=24.15 E-value=2.7e+02 Score=20.14 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=32.2
Q ss_pred HHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEEe
Q 021491 261 LFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIY 304 (311)
Q Consensus 261 L~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~~ 304 (311)
..++...+...|.+|...++.-.|- +. +++.+.+|++..+|
T Consensus 31 ~~~~~~~l~~~G~~v~~ve~~~~g~--ye-v~~~~~dG~~~ev~ 71 (83)
T PF13670_consen 31 IEQAVAKLEAQGYQVREVEFDDDGC--YE-VEARDKDGKKVEVY 71 (83)
T ss_pred HHHHHHHHHhcCCceEEEEEcCCCE--EE-EEEEECCCCEEEEE
Confidence 6788899999999999999965543 33 34789999988765
No 345
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.58 E-value=2.7e+02 Score=20.35 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=34.2
Q ss_pred CCcccHHHHHHHHHHhCCCeEEEEEEEccCceEEEEEEEEecCCCCCCCChHHHHHHHHHHHHHh
Q 021491 124 TDRVGLLSEVFAVLADLQCSVVEAKVWTHNGRIASLIYVKDCNSGSPIEDSQQIDRIEARLRNVL 188 (311)
Q Consensus 124 ~DrpGLL~~I~~~L~~~glnI~~A~i~T~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L 188 (311)
....|++.++.++|..+|+++.. +.|. .|.+-|.- . ...+.+ +..+.+.+.|.+.+
T Consensus 12 n~evGF~rk~L~I~E~~~is~Eh--~PSG----ID~~Siii-~-~~~~~~-~~~~~i~~~i~~~~ 67 (76)
T cd04911 12 NREVGFGRKLLSILEDNGISYEH--MPSG----IDDISIII-R-DNQLTD-EKEQKILAEIKEEL 67 (76)
T ss_pred cchhcHHHHHHHHHHHcCCCEee--ecCC----CccEEEEE-E-ccccch-hhHHHHHHHHHHhc
Confidence 45689999999999999999874 3333 33343432 1 233432 25555666665543
No 346
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=23.42 E-value=3.2e+02 Score=20.42 Aligned_cols=59 Identities=3% Similarity=-0.059 Sum_probs=37.3
Q ss_pred ceeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEEeee
Q 021491 246 SYSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIYSA 306 (311)
Q Consensus 246 ~~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~~~~ 306 (311)
....+.+...+...+ .++.+.+.+.|+.+...-.... .-....||+.|++|.....+..
T Consensus 60 ~~~hi~~~v~~~~dv-~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 60 GLGHIAFRVRSEEDL-DKAEAFFQELGLPTEWVEAGEE-PGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred ceeEEEEECCCHHHH-HHHHHHHHHcCCCcccccCCcC-CCCccEEEEECCCCCEEEEEec
Confidence 344566666555544 4577777888988854311111 1112579999999999988754
No 347
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=23.16 E-value=98 Score=34.92 Aligned_cols=46 Identities=20% Similarity=0.146 Sum_probs=38.2
Q ss_pred CCCeEEEEecCCC--CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEE
Q 021491 21 NTPRVVIDNAVCP--TATLVKVDSARRHGILLEAVQVLTDLNLLIKKA 66 (311)
Q Consensus 21 ~~~~V~~~~~~~~--~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~A 66 (311)
++|.|.+.+...+ .++.|+|..+|.|-|+--|.+.|+.+|+.++-.
T Consensus 72 ~~~~V~v~~~v~~~g~~~~l~Iv~~~~pfl~Dsv~~~l~~~~~~~~~~ 119 (1592)
T COG2902 72 GAPCVRVYPGVAEHGPVTALQIVLDNMPFLVDSVMGELTRLGLQIHLL 119 (1592)
T ss_pred CCceEEecCCcccCCCceeEEEEcCCCCeeehhHHHHHHhcccceEEE
Confidence 3688988743333 459999999999999999999999999998744
No 348
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=22.92 E-value=3.6e+02 Score=21.79 Aligned_cols=86 Identities=9% Similarity=0.082 Sum_probs=40.0
Q ss_pred HHHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhccCCCCCCCCCeEEEEEEeCCcccHHH
Q 021491 52 AVQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIHYGRSNSFNGLTALELTGTDRVGLLS 131 (311)
Q Consensus 52 i~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V~~~DrpGLL~ 131 (311)
+..++..+|+.+.+..+...++..+-..+|.. ++. ++-+ -.+.+-+.+...... .+..++.+.++|.+|--..-|.
T Consensus 2 i~~~~~~~g~~l~~v~~~~~~~~~~l~V~id~-~~g-v~ld-dc~~~sr~i~~~LD~-~d~i~~~y~LEVSSPG~~r~L~ 77 (141)
T PF02576_consen 2 IEPLLEELGLELVDVEVVKEGGNRILRVFIDK-DGG-VSLD-DCEKVSRAISALLDA-EDPIPEDYTLEVSSPGIDRPLK 77 (141)
T ss_dssp HHHHH-S-SSEEEEEEEEEETTEEEEEEEEE--SS----HH-HHHHHHHHHGGGTTT-S----S-EEEEEE--SSSS--S
T ss_pred cccchhhcCCEEEEEEEEECCCCEEEEEEEEe-CCC-CCHH-HHHHHHHHHHHHHcc-ccccCcceEEEEeCCCCCCcCC
Confidence 45678999999999999986655443344433 333 4333 233344444443320 1234577889999764333354
Q ss_pred HHHHHHHhCC
Q 021491 132 EVFAVLADLQ 141 (311)
Q Consensus 132 ~I~~~L~~~g 141 (311)
..-..-...|
T Consensus 78 ~~~~~~~~iG 87 (141)
T PF02576_consen 78 SPRDFERFIG 87 (141)
T ss_dssp SHHHHHHH-S
T ss_pred CHHHHHHhcC
Confidence 4444445555
No 349
>PLN02828 formyltetrahydrofolate deformylase
Probab=22.55 E-value=6e+02 Score=23.27 Aligned_cols=99 Identities=8% Similarity=-0.024 Sum_probs=48.7
Q ss_pred HHHHHHhCCceEEEEEEEE--cCCEEEEEEEEEeCCCCCCCcHHHHHHHHHHhhhcc----CCCCCCCCCeEEEEEEeCC
Q 021491 52 AVQVLTDLNLLIKKAYISS--DGRFFMDVFHVTDLNGNKLTDESVISYIEQSLETIH----YGRSNSFNGLTALELTGTD 125 (311)
Q Consensus 52 i~~~L~~~glnI~~A~i~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~----~rr~~~~~~~t~i~V~~~D 125 (311)
+++.|+++|+||.+++.++ ..|.+.....+.. .+.....+.+.+.+...-.... .-+-........|-|.+.-
T Consensus 1 ~~~~~~~~~~ni~~~~~~~d~~~~~ff~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riavlvSg 79 (268)
T PLN02828 1 LSDCIASRGGNILGVDVFVPENKNVFYSRSEFIF-DPVKWPRAQMDEDFQEISKHFKALKSVVRVPGLDPKYKIAVLASK 79 (268)
T ss_pred CcHHHHhCCCCEeEcccccCCCCCeeEEEEEEEe-CCCCCCHHHHHHHHHHHHHhcCCcceEEEEccCCCCcEEEEEEcC
Confidence 4688999999999999997 3465554433432 2222223445544444222211 1000001112234444433
Q ss_pred cccHHHHHHHHHHhCCCeEEEEEEEc
Q 021491 126 RVGLLSEVFAVLADLQCSVVEAKVWT 151 (311)
Q Consensus 126 rpGLL~~I~~~L~~~glnI~~A~i~T 151 (311)
...=|.+|......-.+++.=+-+.|
T Consensus 80 ~g~nl~~ll~~~~~g~l~~eI~~ViS 105 (268)
T PLN02828 80 QDHCLIDLLHRWQDGRLPVDITCVIS 105 (268)
T ss_pred CChhHHHHHHhhhcCCCCceEEEEEe
Confidence 44446666666666655544333333
No 350
>PRK14644 hypothetical protein; Provisional
Probab=22.10 E-value=4.4e+02 Score=21.48 Aligned_cols=78 Identities=10% Similarity=0.088 Sum_probs=44.7
Q ss_pred HHHHHhCCceEEEEEEEEcCCEEEEEEEEEeCCCCCCC-cHHHHHHHHHHhhhccCCCCCCCCCeEEEEEEeC--CcccH
Q 021491 53 VQVLTDLNLLIKKAYISSDGRFFMDVFHVTDLNGNKLT-DESVISYIEQSLETIHYGRSNSFNGLTALELTGT--DRVGL 129 (311)
Q Consensus 53 ~~~L~~~glnI~~A~i~t~~g~~~d~f~v~~~~g~~~~-~~~~~~~l~~~L~~~~~rr~~~~~~~t~i~V~~~--DrpGL 129 (311)
..++..+|+.+.+......++..+-..+|. .. .++ .+.+-+.|...|.... .-++.+.++|.+| ||| |
T Consensus 5 e~~~~~~g~el~dve~~~~~~~~~LrV~Id-k~--~iddC~~vSr~is~~LD~~d-----~i~~~Y~LEVSSPGldRp-L 75 (136)
T PRK14644 5 EKLLEKFGNKINEIKIVKEDGDLFLEVILN-SR--DLKDIEELTKEISDFIDNLS-----VEFDFDSLDISSPGFDMD-Y 75 (136)
T ss_pred hhhHHhcCCEEEEEEEEeCCCCEEEEEEEC-CC--CHHHHHHHHHHHHHHhcccc-----CCCCCeEEEEECCCCCCC-C
Confidence 357889999999999998554433344442 11 121 1234444454454322 2346788999976 788 3
Q ss_pred HHHHHHHHHhCC
Q 021491 130 LSEVFAVLADLQ 141 (311)
Q Consensus 130 L~~I~~~L~~~g 141 (311)
.. ...-...|
T Consensus 76 -~~-~~f~r~~G 85 (136)
T PRK14644 76 -ET-DELENHIG 85 (136)
T ss_pred -CH-HHHHHhCC
Confidence 33 35444445
No 351
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=21.38 E-value=3.8e+02 Score=20.49 Aligned_cols=55 Identities=11% Similarity=0.056 Sum_probs=36.8
Q ss_pred eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEEeee
Q 021491 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIYSA 306 (311)
Q Consensus 247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~~~~ 306 (311)
...+.+...|+..+.. +.+-|.+.|+.+... . ..+. ...||+.|++|.+.++++.
T Consensus 66 ~~h~~f~v~~~~~v~~-~~~~l~~~G~~~~~~-~-~~~~--~~~~~~~DP~G~~ie~~~~ 120 (134)
T cd08348 66 LNHIAFEVDSLDDLRD-LYERLRAAGITPVWP-V-DHGN--AWSIYFRDPDGNRLELFVD 120 (134)
T ss_pred ceEEEEEeCCHHHHHH-HHHHHHHCCCCcccc-C-CCCc--eeEEEEECCCCCEEEEEEc
Confidence 3346677777666554 445556688877653 1 2222 3579999999999999864
No 352
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=21.01 E-value=2.6e+02 Score=25.05 Aligned_cols=112 Identities=11% Similarity=0.074 Sum_probs=63.2
Q ss_pred eEEEEecC-CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEE----EEEEEcCCEEEEEEEEEeCCCCCCCcHHHHHHH
Q 021491 24 RVVIDNAV-CPTATLVKVDSARRHGILLEAVQVLTDLNLLIKK----AYISSDGRFFMDVFHVTDLNGNKLTDESVISYI 98 (311)
Q Consensus 24 ~V~~~~~~-~~~~t~V~V~~~DrpGL~~~i~~~L~~~glnI~~----A~i~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l 98 (311)
.+.++-.. .+-...|.+.+.++......|-.+|..+|.++-. ..+|..-|. +.+.. .+. ...+.+
T Consensus 80 ~~~yEg~gP~Gvaiive~lTDN~nRt~~~ir~~~~K~gg~l~~~gsv~~~F~~kG~----i~~~~-~~~-----~~d~~~ 149 (234)
T PF01709_consen 80 EITYEGYGPGGVAIIVECLTDNKNRTVSDIRSIFKKNGGSLGPSGSVSFMFERKGV----IEVSK-KDL-----DEDELM 149 (234)
T ss_dssp EEEEEEEETTTEEEEEEEEES-HHHHHHHHHHHHHTTT-EEE-TTSSGGGEEEEEE----EEEEH-CCS------HHHHH
T ss_pred EEEEEEEcCCCcEEEEEEeCCCHhHHHHHHHHHHHHcCceeCCCCcceeeeeeeEE----EEEEe-CCC-----ChHHHH
Confidence 45565433 4445678889999999999999999999998765 222333342 33432 111 123334
Q ss_pred HHHhhhccCCCCCCCCCeEEEEEEeCCcccHHHHHHHHHHhCCCeEEEEEEE
Q 021491 99 EQSLETIHYGRSNSFNGLTALELTGTDRVGLLSEVFAVLADLQCSVVEAKVW 150 (311)
Q Consensus 99 ~~~L~~~~~rr~~~~~~~t~i~V~~~DrpGLL~~I~~~L~~~glnI~~A~i~ 150 (311)
+.+|+.... .-....+. +.|.| .|.-|..+...|...|+.|.++.+.
T Consensus 150 e~aIe~Gae-Dve~~d~~--~~~~c--~p~~~~~v~~~L~~~g~~i~~~e~~ 196 (234)
T PF01709_consen 150 EDAIEAGAE-DVEEDDGE--FEFIC--DPSDLSAVKKALEKKGYEIESAELE 196 (234)
T ss_dssp HHHHHHTES-EEEECTSE--EEEEE--EGGGHHHHHHHHHHTT---SEEEEE
T ss_pred HHHHhCCCc-EeeecCCe--EEEEE--CHHHHHHHHHHHHHcCCCeeEEEEE
Confidence 444443210 00112233 44444 3667999999999999999988875
No 353
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=20.86 E-value=3.7e+02 Score=20.18 Aligned_cols=58 Identities=9% Similarity=0.005 Sum_probs=38.1
Q ss_pred eeEEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEEeee
Q 021491 247 YSVVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIYSA 306 (311)
Q Consensus 247 ~tvl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~~~~ 306 (311)
...+-....++.. +.++...|...|+.+.......... .-..+|+.|++|...-.++.
T Consensus 62 ~~hiaf~v~~~~d-v~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~~~DPdG~~iE~~~~ 119 (122)
T cd07265 62 LDFMGFKVLDDAD-LEKLEARLQAYGVAVERIPAGELPG-VGRRVRFQLPSGHTMELYAD 119 (122)
T ss_pred eeEEEEEeCCHHH-HHHHHHHHHHCCCcEEEcccCCCCC-CceEEEEECCCCCEEEEEEe
Confidence 3445556665555 4678888899999887532222111 12368999999999987764
No 354
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=20.40 E-value=3.7e+02 Score=19.95 Aligned_cols=50 Identities=8% Similarity=-0.054 Sum_probs=35.4
Q ss_pred EEEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeEEe
Q 021491 249 VVNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCCIY 304 (311)
Q Consensus 249 vl~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~~~ 304 (311)
.+.+...| +.++.+.|.+.|+.+...-..+. .-.-.|+++|++|....+.
T Consensus 69 ~~~~~v~d----id~~~~~l~~~G~~~~~~~~~~~--~g~~~~~~~DP~G~~ie~~ 118 (119)
T cd08359 69 ILNFEVDD----VDAEYERLKAEGLPIVLPLRDEP--WGQRHFIVRDPNGVLIDIV 118 (119)
T ss_pred EEEEEECC----HHHHHHHHHhcCCCeeeccccCC--CcceEEEEECCCCCEEEEE
Confidence 45666666 77788889999999876433332 1235678999999988765
No 355
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=20.01 E-value=3.7e+02 Score=19.81 Aligned_cols=51 Identities=10% Similarity=-0.124 Sum_probs=35.0
Q ss_pred EEEEeCCccchHHHHHHHhhcCCeEEEEEEEEecCCeEEEEEEEEecCCCeeE
Q 021491 250 VNVQCKDRTKLLFDVVCTLTDMEYVVFHATINTAGERAYLVINCYQFDSNYCC 302 (311)
Q Consensus 250 l~v~~~DRpGLL~~I~~~l~~~gi~I~~A~I~T~g~~a~D~F~v~~~~g~~~~ 302 (311)
+...+.+...| .++.+-|.+.|+.+....-.+.. ...=.||++|++|....
T Consensus 77 i~~~~~~~~dl-~~~~~~l~~~g~~~~~~~~~~~~-~~~~~~y~~Dp~G~~iE 127 (128)
T PF00903_consen 77 IAFLAFDVDDL-DAAYERLKAQGVEIVEEPDRYYF-GSGYSFYFRDPDGNLIE 127 (128)
T ss_dssp EEEEESSHHHH-HHHHHHHHHTTGEEEEEEEEHST-TCEEEEEEEETTSEEEE
T ss_pred EEEEeccHHHH-HHHHHHHhhcCccEEecCCCCCC-CCEEEEEEECCCCCEEE
Confidence 45566666665 55668888899999977654443 33334589999997654
Done!