BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021493
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HU0|A Chain A, Crystal Structure Of An Hogg1-Dna Borohydride Trapped
Intermediate Complex
pdb|1LWV|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Aminoguanine
pdb|1LWW|A Chain A, Borohydride-Trapped Hogg1 Intermediate Structure Co-
Crystallized With 8-Bromoguanine
pdb|1LWY|A Chain A, Hogg1 Borohydride-Trapped Intermediate Without
8-Oxoguanine
Length = 324
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 138/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 20 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 79
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 80 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 139
Query: 153 QFLCSSNNNIARITKMVDFL-ASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 140 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 199
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG KVA CI L +LD+
Sbjct: 200 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDK 258
Query: 271 HHAIPVDTHVWKIATR 286
A+PVD H+W IA R
Sbjct: 259 PQAVPVDVHMWHIAQR 274
>pdb|1KO9|A Chain A, Native Structure Of The Human 8-Oxoguanine Dna Glycosylase
Hogg1
Length = 345
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 138/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 23 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 82
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 83 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 142
Query: 153 QFLCSSNNNIARITKMVDFL-ASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 143 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 202
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG KVA CI L +LD+
Sbjct: 203 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDK 261
Query: 271 HHAIPVDTHVWKIATR 286
A+PVD H+W IA R
Sbjct: 262 PQAVPVDVHMWHIAQR 277
>pdb|2NOZ|A Chain A, Structure Of Q315f Human 8-Oxoguanine Glycosylase Distal
Crosslink To 8-Oxoguanine Dna
Length = 325
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 138/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 141 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 200
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG KVA CI L +LD+
Sbjct: 201 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDK 259
Query: 271 HHAIPVDTHVWKIATR 286
A+PVD H+W IA R
Sbjct: 260 PQAVPVDVHMWHIAQR 275
>pdb|1FN7|A Chain A, Coupling Of Damage Recognition And Catalysis By A Human
Base-Excision Dna Repair Protein
Length = 317
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 138/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFL-ASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG KVA CI L +LD+
Sbjct: 195 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDK 253
Query: 271 HHAIPVDTHVWKIATR 286
A+PVD H+W IA R
Sbjct: 254 PQAVPVDVHMWHIAQR 269
>pdb|3IH7|A Chain A, Crystal Structure Of Catalytically Active Human
8-Oxoguanine Glycosylase Distally Crosslinked To
Guanine-Containing Dna
Length = 316
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 140/259 (54%), Gaps = 14/259 (5%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQ--------NGDV 89
W + +SEL L L P+GQ+FRW++ P ++G + + +L + GD+
Sbjct: 14 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDL 73
Query: 90 CYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVE 149
+P E A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+E
Sbjct: 74 SQASRPTPDE---LEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIE 130
Query: 150 CLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA- 207
CL F+CSSNNNIARIT MV+ L + G L ++ +H FP
Sbjct: 131 CLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKL 190
Query: 208 GFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFS 267
G GYRA+Y++ + + + GG WL LR+ +EA ALC LPGVG KVA CI L +
Sbjct: 191 GLGYRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMA 249
Query: 268 LDQHHAIPVDTHVWKIATR 286
LD+ A+PVD H+W IA R
Sbjct: 250 LDKPQAVPVDVHMWHIAQR 268
>pdb|2NOL|A Chain A, Structure Of Catalytically Inactive Human 8-Oxoguanine
Glycosylase Distal Crosslink To Oxog Dna
Length = 325
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 138/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 141 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 200
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG +VA CI L +LD+
Sbjct: 201 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDK 259
Query: 271 HHAIPVDTHVWKIATR 286
A+PVD H+W IA R
Sbjct: 260 PQAVPVDVHMWHIAQR 275
>pdb|1EBM|A Chain A, Crystal Structure Of The Human 8-Oxoguanine Glycosylase
(Hogg1) Bound To A Substrate Oligonucleotide
Length = 317
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 138/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFL-ASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG +VA CI L +LD+
Sbjct: 195 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDK 253
Query: 271 HHAIPVDTHVWKIATR 286
A+PVD H+W IA R
Sbjct: 254 PQAVPVDVHMWHIAQR 269
>pdb|2NOH|A Chain A, Structure Of Catalytically Inactive Q315a Human 8-
Oxoguanine Glycosylase Complexed To 8-oxoguanine Dna
Length = 325
Score = 178 bits (452), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 138/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFL-ASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 141 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 200
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG +VA CI L +LD+
Sbjct: 201 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDK 259
Query: 271 HHAIPVDTHVWKIATR 286
A+PVD H+W IA R
Sbjct: 260 PQAVPVDVHMWHIAQR 275
>pdb|1N39|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
pdb|1M3Q|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Base-Excised
Dna And 8-Aminoguanine
pdb|1M3H|A Chain A, Crystal Structure Of Hogg1 D268e Mutant With Product
Oligonucleotide
Length = 317
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 138/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFL-ASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG KVA CI L +LD+
Sbjct: 195 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDK 253
Query: 271 HHAIPVDTHVWKIATR 286
A+PV+ H+W IA R
Sbjct: 254 PQAVPVEVHMWHIAQR 269
>pdb|1N3C|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-oxoguanine Glycosylase
Length = 317
Score = 177 bits (450), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 138/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFL-ASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG KVA CI L +LD+
Sbjct: 195 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDK 253
Query: 271 HHAIPVDTHVWKIATR 286
A+PV+ H+W IA R
Sbjct: 254 PQAVPVNVHMWHIAQR 269
>pdb|1N3A|A Chain A, Structural And Biochemical Exploration Of A Critical Amino
Acid In Human 8-Oxoguanine Glycosylase
Length = 317
Score = 177 bits (449), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 137/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFL-ASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG KVA CI L +LD+
Sbjct: 195 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDK 253
Query: 271 HHAIPVDTHVWKIATR 286
A+PV H+W IA R
Sbjct: 254 PQAVPVQVHMWHIAQR 269
>pdb|2NOE|A Chain A, Structure Of Catalytically Inactive G42a Human
8-Oxoguanine Glycosylase Complexed To 8-Oxoguanine Dna
Length = 325
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 137/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+ Q+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSAQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFL-ASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 141 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 200
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG +VA CI L +LD+
Sbjct: 201 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDK 259
Query: 271 HHAIPVDTHVWKIATR 286
A+PVD H+W IA R
Sbjct: 260 PQAVPVDVHMWHIAQR 275
>pdb|1YQK|A Chain A, Human 8-Oxoguanine Glycosylase Crosslinked With Guanine
Containing Dna
Length = 319
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 137/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSS NNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG KVA CI L +LD+
Sbjct: 195 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDK 253
Query: 271 HHAIPVDTHVWKIATR 286
A+PVD H+W IA R
Sbjct: 254 PQAVPVDVHMWHIAQR 269
>pdb|3KTU|A Chain A, Structure Of Human 8-Oxoguanine Glycosylase 1 Bound To
Fluorninated Oxog-Containing Dna
Length = 317
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 137/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSS NNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG KVA CI L +LD+
Sbjct: 195 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDK 253
Query: 271 HHAIPVDTHVWKIATR 286
A+PVD H+W IA R
Sbjct: 254 PQAVPVDVHMWHIAQR 269
>pdb|2NOF|A Chain A, Structure Of Q315f Human 8-oxoguanine Glycosylase Proximal
Crosslink To 8-oxoguanine Dna
Length = 325
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 137/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSS NNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 141 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 200
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG KVA CI L +LD+
Sbjct: 201 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDK 259
Query: 271 HHAIPVDTHVWKIATR 286
A+PVD H+W IA R
Sbjct: 260 PQAVPVDVHMWHIAQR 275
>pdb|2I5W|A Chain A, Structure Of Hogg1 Crosslinked To Dna Sampling A Normal G
Adjacent To An Oxog
Length = 315
Score = 176 bits (446), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 137/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSS NNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG KVA CI L +LD+
Sbjct: 195 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTKVADCICLMALDK 253
Query: 271 HHAIPVDTHVWKIATR 286
A+PVD H+W IA R
Sbjct: 254 PQAVPVDVHMWHIAQR 269
>pdb|1YQL|A Chain A, Catalytically Inactive Hogg1 Crosslinked With 7-Deaza-8-
Azaguanine Containing Dna
pdb|1YQM|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To 7-Deazaguanine Containing Dna
pdb|1YQR|A Chain A, Catalytically Inactive Human 8-Oxoguanine Glycosylase
Crosslinked To Oxog Containing Dna
Length = 319
Score = 175 bits (443), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 137/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 15 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 74
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 75 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 134
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSS NNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 135 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 194
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG +VA CI L +LD+
Sbjct: 195 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDK 253
Query: 271 HHAIPVDTHVWKIATR 286
A+PVD H+W IA R
Sbjct: 254 PQAVPVDVHMWHIAQR 269
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase
Crosslinked To Undamaged G-Containing Dna
Length = 325
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 136/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+ Q+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSAQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSS NNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 141 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 200
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG +VA CI L +LD+
Sbjct: 201 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDK 259
Query: 271 HHAIPVDTHVWKIATR 286
A+PVD H+W IA R
Sbjct: 260 PQAVPVDVHMWHIAQR 275
>pdb|2NOB|A Chain A, Structure Of Catalytically Inactive H270a Human 8-
Oxoguanine Glycosylase Crosslinked To 8-Oxoguanine Dna
Length = 325
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 136/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 21 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 80
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 81 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 140
Query: 153 QFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSS NNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 141 SFICSSCNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 200
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG +VA CI L +LD+
Sbjct: 201 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDK 259
Query: 271 HHAIPVDTHVWKIATR 286
A+PVD +W IA R
Sbjct: 260 PQAVPVDVAMWHIAQR 275
>pdb|2XHI|A Chain A, Separation-Of-Function Mutants Unravel The Dual Reaction
Mode Of Human 8-Oxoguanine Dna Glycosylase
Length = 360
Score = 170 bits (431), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 136/256 (53%), Gaps = 8/256 (3%)
Query: 38 WTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP 97
W + +SEL L L P+GQ+FRW++ P ++G + + +L + C
Sbjct: 38 WASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDK 97
Query: 98 SE-----PAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLL 152
S+ P A+ + + ++L +L+ + + D F E+A+ G R+LRQDP+ECL
Sbjct: 98 SQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLF 157
Query: 153 QFLCSSNNNIARITKMVDFL-ASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNA-GFG 210
F+CSSNNNIARIT MV+ L + G L ++ +H FP G G
Sbjct: 158 SFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLG 217
Query: 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ 270
YRA+Y++ + + + GG WL LR+ +EA ALC LPGVG VA I L +LD+
Sbjct: 218 YRARYVSASARAILEEQ-GGLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLMALDK 276
Query: 271 HHAIPVDTHVWKIATR 286
A+PV+ H+W IA R
Sbjct: 277 PQAVPVNVHMWHIAQR 292
>pdb|3I0W|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING CYTOSINE Opposite To 8-Oxog
Length = 290
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 116/247 (46%), Gaps = 10/247 (4%)
Query: 48 LSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALL 107
L F GQ FRW + Y G ++ ++ + V Y+I+ E K+
Sbjct: 21 FELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNIN----EEEFKNVWS 76
Query: 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITK 167
++ ++ GE+ + S D + + G R+LRQDP E LL F+ S+NN I I K
Sbjct: 77 EYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKK 135
Query: 168 MVDFLASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNAGFGYRAKYITGTVDVLQSKH 227
++ ++ +G ++ FP G+RAKY+ TVD + +
Sbjct: 136 CINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEECTAGFRAKYLKDTVDRIYN-- 193
Query: 228 SGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWK-IATR 286
G L ++ L+ E + L GVGP+VA CI LFS+ ++ A PVDT V K + +
Sbjct: 194 --GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSL 251
Query: 287 YLLPELA 293
Y+ P+++
Sbjct: 252 YVAPDVS 258
>pdb|3F10|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine Dna Glycosylase In Complex With
8-Oxoguanosine
Length = 292
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 116/247 (46%), Gaps = 10/247 (4%)
Query: 48 LSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALL 107
L F GQ FRW + Y G ++ ++ + V Y+I+ E K+
Sbjct: 21 FELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNIN----EEEFKNVWS 76
Query: 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITK 167
++ ++ GE+ + S D + + G R+LRQDP E LL F+ S+NN I I K
Sbjct: 77 EYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKK 135
Query: 168 MVDFLASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNAGFGYRAKYITGTVDVLQSKH 227
++ ++ +G ++ FP G+RAKY+ TVD + +
Sbjct: 136 CINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEECTAGFRAKYLKDTVDRIYN-- 193
Query: 228 SGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWK-IATR 286
G L ++ L+ E + L GVGP+VA CI LFS+ ++ A PVDT V K + +
Sbjct: 194 --GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSL 251
Query: 287 YLLPELA 293
Y+ P+++
Sbjct: 252 YVAPDVS 258
>pdb|3I0X|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN COMPLEX WITH DSDNA
CONTAINING ADENINE Opposite To 8-Oxog
Length = 291
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 116/247 (46%), Gaps = 10/247 (4%)
Query: 48 LSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALL 107
L F GQ FRW + Y G ++ ++ + V Y+I+ E K+
Sbjct: 21 FELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNIN----EEEFKNVWS 76
Query: 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITK 167
++ ++ GE+ + S D + + G R+LRQDP E LL F+ S+NN I I K
Sbjct: 77 EYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKK 135
Query: 168 MVDFLASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNAGFGYRAKYITGTVDVLQSKH 227
++ ++ +G ++ FP G+RAKY+ TVD + +
Sbjct: 136 CINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEECTAGFRAKYLKDTVDRIYN-- 193
Query: 228 SGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWK-IATR 286
G L ++ L+ E + L GVGP+VA CI LFS+ ++ A PVDT V K + +
Sbjct: 194 --GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSL 251
Query: 287 YLLPELA 293
Y+ P+++
Sbjct: 252 YVAPDVS 258
>pdb|3F0Z|A Chain A, Crystal Structure Of Clostridium Acetobutylicum
8-Oxoguanine GlycosylaseLYASE IN ITS APO-Form
Length = 292
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 114/247 (46%), Gaps = 10/247 (4%)
Query: 48 LSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALL 107
L F GQ FRW + Y G ++ ++ + V Y+I+ E K+
Sbjct: 21 FELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNIN----EEEFKNVWS 76
Query: 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITK 167
++ ++ GE+ + S D + + G R+LRQDP E LL F+ S+NN I I K
Sbjct: 77 EYFDLYRDYGEIKKELS-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPXIKK 135
Query: 168 MVDFLASLGSHLGNVEGFEFHEFPXXXXXXXXXXXXXXNAGFGYRAKYITGTVDVLQSKH 227
++ ++ +G ++ FP G+RAKY+ TVD + +
Sbjct: 136 CINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEECTAGFRAKYLKDTVDRIYN-- 193
Query: 228 SGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWK-IATR 286
G L ++ L+ E + L GVGPKVA CI LFS ++ A PVDT V K +
Sbjct: 194 --GELNLEYIKSLNDNECHEELKKFXGVGPKVADCIXLFSXQKYSAFPVDTWVKKAXXSL 251
Query: 287 YLLPELA 293
Y+ P+++
Sbjct: 252 YVAPDVS 258
>pdb|3S6I|A Chain A, Schizosaccaromyces Pombe 3-Methyladenine Dna Glycosylase
(Mag1) In Complex With Abasic-Dna.
pdb|3S6I|D Chain D, Schizosaccaromyces Pombe 3-Methyladenine Dna Glycosylase
(Mag1) In Complex With Abasic-Dna
Length = 228
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 210 GYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLD 269
G+ A+ I + ++ SG +L +E I+ L + G+G + +FSL+
Sbjct: 102 GFSARKIDSLKSIAEATISGLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSLN 161
Query: 270 QHHAIPVDTHVWKIATRYL--LPEL 292
+ +P D + RYL LP++
Sbjct: 162 RDDVMPADDLSIRNGYRYLHRLPKI 186
>pdb|1KG5|A Chain A, Crystal Structure Of The K142q Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 208 GFGY--RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 265
G GY RA+ + + + H G E + + LPGVG A I
Sbjct: 79 GLGYYARARNLHKAAQQVATLHGG-----------KFPETFEEVAALPGVGRSTAGAILS 127
Query: 266 FSLDQHHAIPVDTHVWKIATR 286
SL +H I +D +V ++ R
Sbjct: 128 LSLGKHFPI-LDGNVQRVLAR 147
>pdb|1KG6|A Chain A, Crystal Structure Of The K142r Mutant Of E.Coli Muty (Core
Fragment)
Length = 225
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 208 GFGY--RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 265
G GY RA+ + + + H G E + + LPGVG A I
Sbjct: 79 GLGYYARARNLHKAAQQVATLHGG-----------KFPETFEEVAALPGVGRSTAGAILS 127
Query: 266 FSLDQHHAIPVDTHVWKIATR 286
SL +H I +D +V ++ R
Sbjct: 128 LSLGKHFPI-LDGNVRRVLAR 147
>pdb|1KG4|A Chain A, Crystal Structure Of The K142a Mutant Of E. Coli Muty
(Core Fragment)
pdb|1WEG|A Chain A, Catalytic Domain Od Muty Form Escherichia Coli K142a
Mutant
Length = 225
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 208 GFGY--RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 265
G GY RA+ + + + H G E + + LPGVG A I
Sbjct: 79 GLGYYARARNLHKAAQQVATLHGG-----------KFPETFEEVAALPGVGRSTAGAILS 127
Query: 266 FSLDQHHAIPVDTHVWKIATR 286
SL +H I +D +V ++ R
Sbjct: 128 LSLGKHFPI-LDGNVARVLAR 147
>pdb|1KQJ|A Chain A, Crystal Structure Of A Mutant Of Muty Catalytic Domain
Length = 225
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 208 GFGY--RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 265
G GY RA+ + + + H G E + + LPGVG A I
Sbjct: 79 GLGYYARARNLHKAAQQVATLHGG-----------KFPETFEEVAALPGVGRSTAGAILS 127
Query: 266 FSLDQHHAIPVDTHVWKIATR 286
SL +H I +D +V ++ R
Sbjct: 128 LSLGKHFPI-LDGNVKRVLAR 147
>pdb|1MUY|A Chain A, Catalytic Domain Of Muty From Escherichia Coli
pdb|1KG2|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.2a Resolution
pdb|1KG3|A Chain A, Crystal Structure Of The Core Fragment Of Muty From E.Coli
At 1.55a Resolution
Length = 225
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 208 GFGY--RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 265
G GY RA+ + + + H G E + + LPGVG A I
Sbjct: 79 GLGYYARARNLHKAAQQVATLHGG-----------KFPETFEEVAALPGVGRSTAGAILS 127
Query: 266 FSLDQHHAIPVDTHVWKIATR 286
SL +H I +D +V ++ R
Sbjct: 128 LSLGKHFPI-LDGNVKRVLAR 147
>pdb|1WEF|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
pdb|1WEI|A Chain A, Catalytic Domain Of Muty From Escherichia Coli K20a Mutant
Complexed To Adenine
Length = 225
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 208 GFGY--RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 265
G GY RA+ + + + H G E + + LPGVG A I
Sbjct: 79 GLGYYARARNLHKAAQQVATLHGG-----------KFPETFEEVAALPGVGRSTAGAILS 127
Query: 266 FSLDQHHAIPVDTHVWKIATR 286
SL +H I +D +V ++ R
Sbjct: 128 LSLGKHFPI-LDGNVKRVLAR 147
>pdb|1KG7|A Chain A, Crystal Structure Of The E161a Mutant Of E.coli Muty (core
Fragment)
Length = 225
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 14/81 (17%)
Query: 208 GFGY--RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 265
G GY RA+ + + + H G E + + LPGVG A I
Sbjct: 79 GLGYYARARNLHKAAQQVATLHGG-----------KFPETFEEVAALPGVGRSTAGAILS 127
Query: 266 FSLDQHHAIPVDTHVWKIATR 286
SL +H I +D +V ++ R
Sbjct: 128 LSLGKHFPI-LDGNVKRVLAR 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,336,867
Number of Sequences: 62578
Number of extensions: 309232
Number of successful extensions: 632
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 518
Number of HSP's gapped (non-prelim): 47
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)