Query 021493
Match_columns 311
No_of_seqs 271 out of 1804
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 04:56:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i0w_A 8-oxoguanine-DNA-glycos 100.0 4.4E-60 1.5E-64 443.2 29.2 253 44-310 17-271 (290)
2 2xhi_A N-glycosylase/DNA lyase 100.0 4.4E-60 1.5E-64 454.8 29.3 271 35-307 35-316 (360)
3 2jhn_A ALKA, 3-methyladenine D 100.0 3.9E-42 1.3E-46 322.4 23.1 237 52-310 28-271 (295)
4 4b21_A Probable DNA-3-methylad 100.0 5.1E-42 1.7E-46 311.3 19.7 187 108-310 18-211 (232)
5 1mpg_A ALKA, 3-methyladenine D 100.0 1.4E-40 4.8E-45 309.9 24.2 240 45-310 7-261 (282)
6 3s6i_A DNA-3-methyladenine gly 100.0 3.5E-37 1.2E-41 278.9 21.3 180 115-310 14-200 (228)
7 2yg9_A DNA-3-methyladenine gly 100.0 6.2E-37 2.1E-41 276.8 18.8 176 109-310 21-201 (225)
8 2h56_A DNA-3-methyladenine gly 100.0 7.5E-36 2.6E-40 271.0 19.2 183 108-310 14-199 (233)
9 2abk_A Endonuclease III; DNA-r 100.0 1.4E-29 4.7E-34 226.4 14.7 152 128-309 8-166 (211)
10 1orn_A Endonuclease III; DNA r 100.0 2.6E-29 8.8E-34 227.0 15.7 152 129-309 13-171 (226)
11 1kea_A Possible G-T mismatches 100.0 5.3E-28 1.8E-32 217.7 16.3 141 143-310 31-177 (221)
12 1pu6_A 3-methyladenine DNA gly 100.0 2.6E-28 8.8E-33 219.3 13.7 130 144-290 27-163 (218)
13 1kg2_A A/G-specific adenine gl 100.0 4.4E-28 1.5E-32 218.7 14.2 140 144-309 27-171 (225)
14 3fhg_A Mjogg, N-glycosylase/DN 100.0 3.6E-28 1.2E-32 216.8 13.2 161 130-310 15-180 (207)
15 3n0u_A Probable N-glycosylase/ 99.9 6.6E-28 2.3E-32 216.6 12.5 154 128-310 29-192 (219)
16 3n5n_X A/G-specific adenine DN 99.9 7.9E-27 2.7E-31 217.1 10.7 121 145-291 47-172 (287)
17 3fsp_A A/G-specific adenine gl 99.9 3.3E-26 1.1E-30 220.2 12.1 140 144-309 36-180 (369)
18 3fhf_A Mjogg, N-glycosylase/DN 99.9 8.3E-26 2.9E-30 202.2 13.4 152 129-310 25-187 (214)
19 4e9f_A Methyl-CPG-binding doma 99.9 8.7E-23 3E-27 175.1 9.1 113 144-288 28-146 (161)
20 4glx_A DNA ligase; inhibitor, 92.4 0.45 1.5E-05 47.9 9.3 81 191-287 469-576 (586)
21 3vdp_A Recombination protein R 91.4 0.13 4.4E-06 45.2 3.5 31 241-271 20-50 (212)
22 1vdd_A Recombination protein R 90.3 0.17 5.9E-06 44.8 3.4 31 242-272 7-37 (228)
23 2fmp_A DNA polymerase beta; nu 90.2 0.94 3.2E-05 42.3 8.5 57 203-265 58-116 (335)
24 2ihm_A POL MU, DNA polymerase 90.2 0.79 2.7E-05 43.3 8.1 52 208-265 68-120 (360)
25 1x2i_A HEF helicase/nuclease; 89.0 0.57 1.9E-05 33.3 4.7 30 234-267 37-66 (75)
26 4gfj_A Topoisomerase V; helix- 88.5 0.52 1.8E-05 45.6 5.4 76 189-264 537-639 (685)
27 2owo_A DNA ligase; protein-DNA 87.8 1.1 3.9E-05 45.7 7.8 68 192-267 470-564 (671)
28 2a1j_B DNA excision repair pro 87.4 0.77 2.6E-05 34.4 4.8 30 234-267 55-84 (91)
29 2duy_A Competence protein come 87.2 0.2 6.9E-06 36.2 1.3 52 192-264 17-70 (75)
30 1z00_A DNA excision repair pro 86.9 0.84 2.9E-05 33.9 4.7 30 234-267 42-71 (89)
31 1kft_A UVRC, excinuclease ABC 86.4 0.77 2.6E-05 33.3 4.2 29 234-266 47-75 (78)
32 2ztd_A Holliday junction ATP-d 86.0 0.29 1E-05 43.0 1.9 26 245-270 121-146 (212)
33 2edu_A Kinesin-like protein KI 85.9 1.5 5.2E-05 33.2 5.8 58 193-267 31-90 (98)
34 1jms_A Terminal deoxynucleotid 85.7 2.1 7.1E-05 40.7 7.9 52 208-265 87-139 (381)
35 2bcq_A DNA polymerase lambda; 85.2 2.7 9.4E-05 39.2 8.4 97 203-309 58-159 (335)
36 1dgs_A DNA ligase; AMP complex 85.1 1.4 4.8E-05 45.0 6.7 68 192-267 465-559 (667)
37 3arc_U Photosystem II 12 kDa e 84.7 0.52 1.8E-05 36.3 2.6 53 192-265 16-70 (97)
38 2duy_A Competence protein come 84.6 0.51 1.8E-05 34.0 2.4 21 246-266 26-46 (75)
39 2ztd_A Holliday junction ATP-d 82.8 0.7 2.4E-05 40.5 2.9 25 241-265 82-106 (212)
40 1z00_B DNA repair endonuclease 82.2 0.91 3.1E-05 33.9 3.0 28 242-270 13-40 (84)
41 3b0x_A DNA polymerase beta fam 81.4 3.2 0.00011 41.5 7.5 65 193-265 44-111 (575)
42 1ixr_A Holliday junction DNA h 80.0 1 3.5E-05 38.8 2.9 19 248-266 108-126 (191)
43 1z3e_B DNA-directed RNA polyme 79.3 2.7 9.4E-05 30.5 4.6 47 205-264 12-58 (73)
44 2a1j_A DNA repair endonuclease 79.1 1 3.6E-05 31.5 2.3 26 246-272 3-28 (63)
45 1ixr_A Holliday junction DNA h 79.0 0.8 2.7E-05 39.5 1.9 12 208-219 79-91 (191)
46 1cuk_A RUVA protein; DNA repai 78.3 0.86 2.9E-05 39.7 1.9 21 246-266 107-127 (203)
47 1s5l_U Photosystem II 12 kDa e 77.7 1 3.6E-05 36.6 2.2 49 195-264 56-106 (134)
48 3gfk_B DNA-directed RNA polyme 77.6 3.2 0.00011 30.6 4.6 47 205-264 19-65 (79)
49 3c1y_A DNA integrity scanning 76.7 3.6 0.00012 39.1 5.9 40 187-226 332-373 (377)
50 1cuk_A RUVA protein; DNA repai 76.1 1.4 4.8E-05 38.3 2.7 25 241-265 67-91 (203)
51 2ofk_A 3-methyladenine DNA gly 75.7 17 0.00058 31.0 9.3 130 123-265 6-167 (183)
52 1z00_A DNA excision repair pro 74.8 2 6.8E-05 31.8 2.9 23 243-265 15-37 (89)
53 1s5l_U Photosystem II 12 kDa e 74.7 1.6 5.6E-05 35.4 2.5 19 246-264 62-80 (134)
54 3arc_U Photosystem II 12 kDa e 73.9 1.2 4.1E-05 34.3 1.4 20 246-265 25-44 (97)
55 2jg6_A DNA-3-methyladenine gly 73.7 20 0.00069 30.6 9.2 134 123-270 6-171 (186)
56 2bgw_A XPF endonuclease; hydro 73.6 3.7 0.00013 35.5 4.8 29 234-266 185-213 (219)
57 4gfj_A Topoisomerase V; helix- 72.8 3.8 0.00013 39.7 4.9 69 187-259 485-572 (685)
58 1wcn_A Transcription elongatio 72.6 9.4 0.00032 27.2 6.0 33 190-222 28-62 (70)
59 2edu_A Kinesin-like protein KI 72.3 1.8 6.2E-05 32.8 2.1 21 246-266 39-59 (98)
60 1x2i_A HEF helicase/nuclease; 72.3 2.6 9E-05 29.6 2.9 23 243-265 10-32 (75)
61 2ihm_A POL MU, DNA polymerase 72.1 4.6 0.00016 38.0 5.3 52 207-271 34-86 (360)
62 2bcq_A DNA polymerase lambda; 71.9 2.4 8.4E-05 39.5 3.4 46 208-266 31-76 (335)
63 2a1j_B DNA excision repair pro 71.6 2.7 9.1E-05 31.3 2.9 26 243-269 28-53 (91)
64 2fmp_A DNA polymerase beta; nu 71.2 3 0.0001 38.9 3.8 44 210-266 33-76 (335)
65 2i5h_A Hypothetical protein AF 71.0 1.3 4.4E-05 38.5 1.2 23 245-267 130-152 (205)
66 3k4g_A DNA-directed RNA polyme 70.7 4.8 0.00016 30.2 4.1 46 206-264 16-61 (86)
67 1jms_A Terminal deoxynucleotid 69.6 5.2 0.00018 38.0 5.1 51 207-270 53-104 (381)
68 2kp7_A Crossover junction endo 67.3 2.7 9.3E-05 31.5 2.1 41 211-264 35-75 (87)
69 2w9m_A Polymerase X; SAXS, DNA 65.9 3.2 0.00011 41.5 2.9 23 243-265 93-115 (578)
70 1kft_A UVRC, excinuclease ABC 65.7 2.3 7.8E-05 30.7 1.4 22 245-266 22-43 (78)
71 2bgw_A XPF endonuclease; hydro 59.6 7.1 0.00024 33.6 3.7 23 244-266 159-181 (219)
72 1coo_A RNA polymerase alpha su 56.2 8.7 0.0003 29.5 3.2 47 205-264 27-73 (98)
73 3r8n_M 30S ribosomal protein S 55.3 7.3 0.00025 30.7 2.7 44 244-287 13-59 (114)
74 2w9m_A Polymerase X; SAXS, DNA 55.1 5 0.00017 40.0 2.2 16 248-263 132-147 (578)
75 1ucv_A Ephrin type-A receptor 54.6 20 0.00067 26.0 4.9 28 190-217 31-61 (81)
76 3u5c_S 40S ribosomal protein S 51.7 6.7 0.00023 32.3 2.0 42 245-286 28-72 (146)
77 1vq8_Y 50S ribosomal protein L 51.0 3.2 0.00011 37.0 0.0 23 247-269 15-37 (241)
78 3iz6_M 40S ribosomal protein S 50.5 8.8 0.0003 31.8 2.6 25 243-267 24-48 (152)
79 3j20_O 30S ribosomal protein S 48.8 8.8 0.0003 31.6 2.3 24 244-267 20-43 (148)
80 1b22_A DNA repair protein RAD5 48.2 32 0.0011 26.8 5.5 55 200-267 24-78 (114)
81 3c1y_A DNA integrity scanning 47.6 18 0.00061 34.3 4.5 38 219-264 327-364 (377)
82 3psf_A Transcription elongatio 46.3 27 0.00092 37.4 6.1 67 194-265 660-735 (1030)
83 2xzm_M RPS18E; ribosome, trans 46.2 11 0.00038 31.2 2.6 24 244-267 27-50 (155)
84 1vq8_Y 50S ribosomal protein L 43.6 4.9 0.00017 35.8 0.0 49 203-265 16-66 (241)
85 2lkw_A Membrane fusion protein 42.6 8.6 0.00029 21.5 0.9 10 18-27 8-17 (26)
86 2a1j_A DNA repair endonuclease 42.1 20 0.0007 24.7 3.1 30 188-218 22-53 (63)
87 3bzc_A TEX; helix-turn-helix, 41.8 33 0.0011 35.7 5.8 73 199-288 505-588 (785)
88 3psi_A Transcription elongatio 41.4 32 0.0011 37.5 5.9 67 194-265 657-732 (1219)
89 3k1r_B Usher syndrome type-1G 41.2 33 0.0011 24.4 4.2 29 192-220 27-57 (74)
90 3sgi_A DNA ligase; HET: DNA AM 41.1 5.7 0.00019 40.2 0.0 22 246-267 560-581 (615)
91 2vqe_M 30S ribosomal protein S 40.5 12 0.00041 30.0 1.8 23 244-266 14-36 (126)
92 1b4f_A EPHB2; SAM domain, EPH 39.2 35 0.0012 24.5 4.2 30 190-219 35-67 (82)
93 2qkq_A Ephrin type-B receptor 38.3 31 0.0011 24.9 3.8 30 189-218 38-70 (83)
94 2e8n_A Ephrin type-A receptor 36.0 32 0.0011 25.2 3.6 31 190-220 36-69 (88)
95 2kso_A Ephrin type-A receptor 34.8 34 0.0011 24.9 3.4 34 190-224 40-76 (82)
96 1b0x_A Protein (EPHA4 receptor 32.4 56 0.0019 24.2 4.4 30 190-219 50-82 (94)
97 3c65_A Uvrabc system protein C 31.9 9.7 0.00033 33.5 0.0 18 246-264 204-221 (226)
98 2bwb_A Ubiquitin-like protein 31.8 74 0.0025 20.5 4.4 43 193-251 3-45 (46)
99 2eao_A Ephrin type-B receptor 30.8 47 0.0016 24.9 3.8 34 190-224 46-82 (99)
100 1x40_A ARAP2; ASAP-related pro 30.7 39 0.0014 25.0 3.3 35 190-225 39-76 (91)
101 2dna_A Unnamed protein product 29.7 58 0.002 23.0 3.8 50 192-257 14-64 (67)
102 1u9l_A Transcription elongatio 29.4 75 0.0026 22.4 4.4 37 189-225 26-64 (70)
103 3kka_C Ephrin type-A receptor 29.4 59 0.002 23.8 4.0 30 190-219 45-77 (86)
104 3h8m_A Ephrin type-A receptor 29.4 63 0.0022 23.9 4.2 30 190-219 49-81 (90)
105 2nrt_A Uvrabc system protein C 28.6 30 0.001 30.2 2.6 20 245-264 166-185 (220)
106 1exn_A 5'-exonuclease, 5'-nucl 28.2 23 0.00078 32.3 1.8 22 248-270 204-225 (290)
107 1b22_A DNA repair protein RAD5 28.2 44 0.0015 26.0 3.3 36 190-225 46-83 (114)
108 1v38_A SAM-domain protein sams 27.0 76 0.0026 22.6 4.2 35 189-224 35-72 (78)
109 2k4p_A Phosphatidylinositol-3, 26.9 78 0.0027 23.2 4.3 30 189-218 49-81 (86)
110 3q8k_A Flap endonuclease 1; he 26.1 26 0.00089 32.5 1.8 15 251-265 236-250 (341)
111 1z00_B DNA repair endonuclease 25.2 48 0.0017 24.3 2.8 30 188-218 36-67 (84)
112 2ziu_A MUS81 protein; helix-ha 25.1 38 0.0013 30.6 2.7 23 243-265 233-255 (311)
113 2b6g_A VTS1P; alpha-helix, pen 24.9 74 0.0025 25.1 4.0 29 192-220 72-103 (119)
114 3hil_A Ephrin type-A receptor 24.4 56 0.0019 23.7 3.1 29 190-218 47-78 (82)
115 3bqs_A Uncharacterized protein 24.0 42 0.0014 25.2 2.3 24 247-270 4-27 (93)
116 3b0x_A DNA polymerase beta fam 23.0 1.2E+02 0.0042 29.8 6.2 53 207-267 20-73 (575)
117 2d3d_A VTS1 protein; RNA bindi 22.7 1.4E+02 0.0046 22.2 4.9 29 192-220 41-72 (88)
118 1wcn_A Transcription elongatio 22.4 1.3E+02 0.0046 21.0 4.7 42 219-267 19-60 (70)
119 1wr1_B Ubiquitin-like protein 22.4 1.1E+02 0.0037 20.8 4.0 45 192-252 12-56 (58)
120 1t57_A Conserved protein MTH16 22.2 53 0.0018 28.3 2.9 69 201-280 98-168 (206)
121 2rqr_A CED-12 homolog, engulfm 21.7 2E+02 0.0067 22.0 6.0 6 68-73 92-97 (119)
122 3qe9_Y Exonuclease 1; exonucle 21.3 29 0.00099 32.3 1.1 16 250-265 228-243 (352)
123 2kg5_A ARF-GAP, RHO-GAP domain 21.1 74 0.0025 24.0 3.2 27 192-218 52-81 (100)
124 3c65_A Uvrabc system protein C 21.0 20 0.0007 31.5 0.0 29 245-274 171-199 (226)
125 3idw_A Actin cytoskeleton-regu 21.0 2.3E+02 0.008 20.2 7.5 62 151-228 5-66 (72)
126 2es6_A VTS1P; SAM domain, prot 20.7 1.5E+02 0.0053 22.6 4.9 29 192-220 54-85 (101)
No 1
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=100.00 E-value=4.4e-60 Score=443.15 Aligned_cols=253 Identities=30% Similarity=0.490 Sum_probs=232.0
Q ss_pred CCCCCCcCcccCCCCCcCceeeCCCceEEeeCCeEEEEEEecCCcEEEEEcCCCChHHHHHHHHHhhcCCCCHHHHHHHH
Q 021493 44 TQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGF 123 (311)
Q Consensus 44 ~~~~~~L~~tl~~GQ~Frw~~~~~~~~~gv~~~~~v~l~q~~~~~l~~~~~~~~~~~~~~~~l~~yf~Ld~dl~~~~~~l 123 (311)
..++|||+.||+|||||||++.+++.|+||++++++.|+|.++ .+. +++ .+.+++.+.+++||+||.|++.+++.+
T Consensus 17 ~~~~~~l~~tl~~GQ~Frw~~~~~~~~~~v~~~~~~~l~q~~~-~~~--~~~-~~~~~~~~~~~~~fdLd~d~~~~~~~l 92 (290)
T 3i0w_A 17 NVENFELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGE-DVV--IYN-INEEEFKNVWSEYFDLYRDYGEIKKEL 92 (290)
T ss_dssp SCCSCCHHHHHSSSSCSSEEECTTSCEEEEETTEEEEEEEETT-EEE--EET-CCHHHHHHTHHHHTTTTSCHHHHHHHH
T ss_pred ecccCcHHHHhCccCccCcEEeCCCeEEEEECCEEEEEEEcCC-EEE--EEc-CCHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4568999999999999999999888999999999999999854 443 332 356788899999999999999999999
Q ss_pred hccChhHHHHHHHhcCCccCCCCHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCCCccccccccccCCCHHHHhcCCHH
Q 021493 124 SASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLERLSLVSEV 202 (311)
Q Consensus 124 ~~~D~~l~~~~~~~~GlR~l~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~-~~G~~~~~~~~~~~~~FPtpe~La~~~~e 202 (311)
+ .||.|+++++.++|+|++++||||+||++|||||+++++|.+++++|+ +||+++ +.++..++.||||++|++++++
T Consensus 93 ~-~Dp~l~~~~~~~~glR~~~~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~-~~~g~~~~~fPtpe~la~~~~e 170 (290)
T 3i0w_A 93 S-RDPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMIKKCINNISEKAGKKL-EYKGKIYYAFPTVDKLHEFTEK 170 (290)
T ss_dssp T-TSHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEE-EETTEEEECCCCHHHHTTCCHH
T ss_pred h-hCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCc-ccCCcccccCCcHHHHHCCCHH
Confidence 8 899999999999999999999999999999999999999999999999 899998 7788889999999999999999
Q ss_pred HHHHcCCchHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcCCCCccccchHHHH
Q 021493 203 ELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWK 282 (311)
Q Consensus 203 ~Lr~~Glg~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fPVDt~v~R 282 (311)
+|+++|+|+||+||+++|+.+.+ |.++++.|.++++++++++|++|||||||||+||++|++|++|+||||+||+|
T Consensus 171 ~L~~~g~g~Ra~~I~~~A~~i~~----g~~~l~~l~~~~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpvD~~v~r 246 (290)
T 3i0w_A 171 DFEECTAGFRAKYLKDTVDRIYN----GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKK 246 (290)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHT----TSSCHHHHHHSCHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHHHh----CCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcceecHHHHH
Confidence 99999999999999999999998 67789999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcccCCCCCHHHHHHHH-HHhh
Q 021493 283 IATRYLLPELAGVRLTPKLCSRVA-EAFC 310 (311)
Q Consensus 283 i~~r~~~~~~~~~~~t~k~y~~i~-~~~~ 310 (311)
++.++|+.+ ..++++..++. +.|+
T Consensus 247 ~~~rl~~~~----~~~~~~i~~~~~~~~~ 271 (290)
T 3i0w_A 247 AMMSLYVAP----DVSLKKIRDFGREKFG 271 (290)
T ss_dssp HHHHHTSCT----TCCHHHHHHHHHHHHG
T ss_pred HHHHhcCCC----CCCHHHHHHHHHhhcc
Confidence 999998643 35677777776 6664
No 2
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=100.00 E-value=4.4e-60 Score=454.79 Aligned_cols=271 Identities=35% Similarity=0.701 Sum_probs=245.3
Q ss_pred CCCcccccCCCCCCCcCcccCCCCCcCceeeCCCceEEeeCCeEEEEEEecCCcEEEEEcCCCC------hHHHHHHHHH
Q 021493 35 PSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPS------EPAAKSALLD 108 (311)
Q Consensus 35 ~~~w~~l~~~~~~~~L~~tl~~GQ~Frw~~~~~~~~~gv~~~~~v~l~q~~~~~l~~~~~~~~~------~~~~~~~l~~ 108 (311)
...|++|+++..+|||+.||.|||||||++.++|.|+||++++++.|+|.+ +.+.|+++++.. ..++.+.+++
T Consensus 35 ~~~w~~l~~~~~~~~L~~tl~~GQ~Frw~~~~d~~w~~v~~~~v~~l~q~~-~~v~~~~~~~~~~~~~~~~~~~~~~~r~ 113 (360)
T 2xhi_A 35 PALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTE-EQLHCTVYRGDKSQASRPTPDELEAVRK 113 (360)
T ss_dssp GGGCEEEECCTTTCCHHHHTTTTSCSCCEEEETTEEEEEETTEEEEEEECS-SEEEEEEECCSSSCCCCCCHHHHHHHHH
T ss_pred cCCceEecCCccccCHHHHcCCCCccceeecCCCeEEEEECCEEEEEEEcC-CEEEEEEecCcccccccchHHHHHHHHH
Confidence 468999999999999999999999999999888899999999999999964 567888876432 2377899999
Q ss_pred hhcCCCCHHHHHHHHhccChhHHHHHHHhcCCccCCCCHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCCCcccccccc
Q 021493 109 FLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEF 187 (311)
Q Consensus 109 yf~Ld~dl~~~~~~l~~~D~~l~~~~~~~~GlR~l~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~-~~G~~~~~~~~~~~ 187 (311)
||+||.|++.+++.|...||.|+++++.++|+|++++||||+||++|||||+++++|.+++++|+ +||+++++++|..+
T Consensus 114 ~fdLd~d~~~~~~~l~~~Dp~l~~l~~~~~glR~~~~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~ 193 (360)
T 2xhi_A 114 YFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTY 193 (360)
T ss_dssp HTTTTSCHHHHHHHHHHHCHHHHHHHHHSTTCCCCCCCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEE
T ss_pred hcccCCCHHHHHHHHHhhCHHHHHHHHHcCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCccc
Confidence 99999999999999988999999999999999999999999999999999999999999999999 89998877788889
Q ss_pred ccCCCHHHHhcCCH-HHHHHcCCchHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHH
Q 021493 188 HEFPSLERLSLVSE-VELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALF 266 (311)
Q Consensus 188 ~~FPtpe~La~~~~-e~Lr~~Glg~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf 266 (311)
+.||||++|++++. ++|+.+||++||+||+++|+.+.++++ |.++++.|..+++++++++|++|||||+|||+|||+|
T Consensus 194 ~~fPtpe~La~~~~ee~Lr~~Gl~~RA~~I~~~A~~i~~~~~-G~~~L~~l~~~~~~~~~~~L~~LpGIGp~TA~~ill~ 272 (360)
T 2xhi_A 194 HGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQG-GLAWLQQLRESSYEEAHKALCILPGVGTCVADKICLM 272 (360)
T ss_dssp ECCCCHHHHTSTTHHHHHHHTTCTTHHHHHHHHHHHHHHTTC-THHHHHGGGTSCHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred ccCCCHHHHHcCCHHHHHHHcCCcHHHHHHHHHHHHHHhccC-CccCHHHHhcCCHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999986 579999999999999999999998654 5789999999999999999999999999999999999
Q ss_pred hcCCCCccccchHHHHHHHHc-CCCccc--CCCCCHHHHHHHHH
Q 021493 267 SLDQHHAIPVDTHVWKIATRY-LLPELA--GVRLTPKLCSRVAE 307 (311)
Q Consensus 267 ~l~~~d~fPVDt~v~Ri~~r~-~~~~~~--~~~~t~k~y~~i~~ 307 (311)
++|++|+||||+||+|++.|+ ++.... .+.++++.|.++.+
T Consensus 273 alg~pd~fpvDthV~Ri~~r~~gl~~~~~~~k~~~~~~~~~l~~ 316 (360)
T 2xhi_A 273 ALDKPQAVPVNVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGN 316 (360)
T ss_dssp HSCCTTCCCCSHHHHHHHHHHHCCCCSSCSCSSCCHHHHHHHHH
T ss_pred hCCCCCEEEecHHHHHHHHHHhCcccccccccCCChHHHHHHHH
Confidence 999999999999999999996 554321 25678899988543
No 3
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=100.00 E-value=3.9e-42 Score=322.38 Aligned_cols=237 Identities=16% Similarity=0.184 Sum_probs=200.8
Q ss_pred cccCCCCCcCceeeCCCceEEeeCCeEEEEEEecCCcEEEEEcCCC-ChHHHHHHHHHhhcCCCCHHHHHHHHhccChhH
Q 021493 52 LTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSP-SEPAAKSALLDFLNMGISLGELWEGFSASDCRF 130 (311)
Q Consensus 52 ~tl~~GQ~Frw~~~~~~~~~gv~~~~~v~l~q~~~~~l~~~~~~~~-~~~~~~~~l~~yf~Ld~dl~~~~~~l~~~D~~l 130 (311)
..+.+|+.+|+.+.+++ ..++.|++.+++.+.++...+. ..+.+.+.+++||+||.|++.+ ++...||.+
T Consensus 28 e~~~~~~~~R~~~~~~~-------~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdLd~d~~~~--~~~~~D~~l 98 (295)
T 2jhn_A 28 DVVESGVWRRAIVLDGR-------AVAVMAYPESERTIVVEGNFENREWEAVRRKLVEYLGLQNPEELY--RFMDGDEKL 98 (295)
T ss_dssp CEEETTEEEEEEEETTE-------EEEEEEEEEETTEEEEEESSCGGGHHHHHHHHHHHHTCSCCHHHH--HHHHTSHHH
T ss_pred EEEeCCEEEEEEEECCe-------eEEEEEEECCCCEEEEecCCchhhHHHHHHHHHHHhCCCCCHHHH--HhhccCHHH
Confidence 34678888888888653 4567888754555666522211 2456889999999999999999 677799999
Q ss_pred HHHHHHhcCCccCC---CCHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCCCccccccccccCCCHHHHhcCCHHHHHH
Q 021493 131 AELAKYLAGARVLR---QDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLERLSLVSEVELRN 206 (311)
Q Consensus 131 ~~~~~~~~GlR~l~---~dpfe~Li~~IlsQq~~i~~a~~~~~~L~-~~G~~~~~~~~~~~~~FPtpe~La~~~~e~Lr~ 206 (311)
+.+++.++|+|+.+ +||||+||++|||||+++++|.+++++|+ +||+++ +.+|..++.||||++|+++++++|+.
T Consensus 99 ~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~-~~~g~~~~~fPtp~~la~~~~~~Lr~ 177 (295)
T 2jhn_A 99 RMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEV-EWNGLKFYGFPTQEAILKAGVEGLRE 177 (295)
T ss_dssp HHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEE-EETTEEEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCC-CCCCCccccCCCHHHHHcCCHHHHHH
Confidence 99999999999986 99999999999999999999999999999 799987 35677889999999999999999999
Q ss_pred cCCch-HHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcCCCCccccc-hHHHHHH
Q 021493 207 AGFGY-RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVD-THVWKIA 284 (311)
Q Consensus 207 ~Glg~-RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fPVD-t~v~Ri~ 284 (311)
||+++ ||+||+++|+. | +++.+.++++++++++|++|||||+|||+||++|++| +|+|||| .|++|++
T Consensus 178 ~G~~~rKa~~i~~~A~~------g---~l~~l~~~~~~e~~~~L~~lpGIG~~TA~~ill~~lg-~d~fpvdD~~~rr~~ 247 (295)
T 2jhn_A 178 CGLSRRKAELIVEIAKE------E---NLEELKEWGEEEAYEYLTSFKGIGRWTAELVLSIALG-KNVFPADDLGVRRAV 247 (295)
T ss_dssp TTCCHHHHHHHHHHHTC------S---SGGGGGGSCHHHHHHHHHTSTTCCHHHHHHHHHHTTC-CCCCCTTCHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHC------C---CHhhhhcCCHHHHHHHHhcCCCcCHHHHHHHHHHccC-CCcccchHHHHHHHH
Confidence 99997 69999999987 2 6788888999999999999999999999999999999 9999995 5667799
Q ss_pred HHcCCCcccCCCCCHHHHHHHHHHhh
Q 021493 285 TRYLLPELAGVRLTPKLCSRVAEAFC 310 (311)
Q Consensus 285 ~r~~~~~~~~~~~t~k~y~~i~~~~~ 310 (311)
+++|... .+..+++++.++++.|+
T Consensus 248 ~~~~g~~--~~~~~~~~~~~~~e~~~ 271 (295)
T 2jhn_A 248 SRLYFNG--EIQSAEKVREIARERFG 271 (295)
T ss_dssp HHHHSTT--CCCCHHHHHHHHHHHTG
T ss_pred HHHhcCC--CCCCCHHHHHHHHHhcc
Confidence 9985321 12578899999998885
No 4
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=100.00 E-value=5.1e-42 Score=311.29 Aligned_cols=187 Identities=13% Similarity=0.219 Sum_probs=171.5
Q ss_pred HhhcCCCCHHHHHHHHhccChhHHHHHHHhcCCcc---CCCCHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCCCcccc
Q 021493 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARV---LRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVE 183 (311)
Q Consensus 108 ~yf~Ld~dl~~~~~~l~~~D~~l~~~~~~~~GlR~---l~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~-~~G~~~~~~~ 183 (311)
-+|+||.|+++++++|+..||.|+++++.++|+|+ ..+||||+||++||+||+++++|.+++.+|+ +||+.
T Consensus 18 ~~ldld~d~~~~~~~L~~~Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~----- 92 (232)
T 4b21_A 18 SHMSKDSDYKRAEKHLSSIDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDN----- 92 (232)
T ss_dssp ---CHHHHHHHHHHHHTTTCHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSS-----
T ss_pred CcCCCccCHHHHHHHHHhhCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCC-----
Confidence 48999999999999999889999999999999986 3579999999999999999999999999998 79863
Q ss_pred ccccccCCCHHHHhcCCHHHHHHcCCch-HHHHHHHHHHHHHHhcCCCcc-chhhhhCCCHHHHHHHhhcCCccchHHHH
Q 021493 184 GFEFHEFPSLERLSLVSEVELRNAGFGY-RAKYITGTVDVLQSKHSGGAE-WLLSLRKLDLQEAIDALCTLPGVGPKVAA 261 (311)
Q Consensus 184 ~~~~~~FPtpe~La~~~~e~Lr~~Glg~-RA~~I~~~A~~i~~~~~gg~~-~l~~L~~~~~~e~~~~L~~l~GIG~ktAd 261 (311)
+.||||++|+++++++|+.|||++ ||+||+++|+.+.+ |.+ +++.|.++++++++++|++|||||+|||+
T Consensus 93 ----~~fPtpe~la~~~~e~Lr~~Gl~~~Ka~~l~~~A~~~~~----g~~p~l~~l~~~~~~~~~~~L~~l~GIG~~TA~ 164 (232)
T 4b21_A 93 ----DEFPTPKQIMETDVETLHECGFSKLKSQEIHIVAEAALN----KQIPSKSEIEKMSEEELMESLSKIKGVKRWTIE 164 (232)
T ss_dssp ----SSCCCHHHHHTSCHHHHHTTTCCHHHHHHHHHHHHHHHT----TCSCCHHHHHHSCHHHHHHHHTTSTTCCHHHHH
T ss_pred ----CCCCCHHHHHcCCHHHHHHcCCcHHHHHHHHHHHHHHHh----CCCCCHHHHHcCCHHHHHHHHHhCCCcCHHHHH
Confidence 579999999999999999999997 79999999999997 667 89999999999999999999999999999
Q ss_pred HHHHHhcCCCCcccc-chHHHHHHHHcCCCcccCCCCCHHHHHHHHHHhh
Q 021493 262 CIALFSLDQHHAIPV-DTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFC 310 (311)
Q Consensus 262 ~vlLf~l~~~d~fPV-Dt~v~Ri~~r~~~~~~~~~~~t~k~y~~i~~~~~ 310 (311)
|||+|+++++|+||| |+||+|+++++|.. ...++++++.++++.|+
T Consensus 165 ~ill~alg~pd~fpv~D~~v~r~~~rl~~~---~~~~~~~~~~~~~e~w~ 211 (232)
T 4b21_A 165 MYSIFTLGRLDIMPADDSTLKNEAKEFFGL---SSKPQTEEVEKLTKPCK 211 (232)
T ss_dssp HHHHHTSCCSSCCCTTCHHHHHHHHHHTTC---SSCCCHHHHHHHTGGGT
T ss_pred HHHHHhCCCCCeeeCccHHHHHHHHHHhCC---CCCCCHHHHHHHHHHcc
Confidence 999999999999999 99999999998753 24678999999999986
No 5
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=100.00 E-value=1.4e-40 Score=309.95 Aligned_cols=240 Identities=18% Similarity=0.199 Sum_probs=197.2
Q ss_pred CCCCCcCcccCC-----CCCcCceeeCCCceE-Ee-eCCe--EEEEEEecC-CcEEEEEcCC--CChHHHHHHHHHhhcC
Q 021493 45 QSELSLPLTFPT-----GQTFRWKKTGPLQYT-GP-IGPH--LISLKHLQN-GDVCYHIHTS--PSEPAAKSALLDFLNM 112 (311)
Q Consensus 45 ~~~~~L~~tl~~-----GQ~Frw~~~~~~~~~-gv-~~~~--~v~l~q~~~-~~l~~~~~~~--~~~~~~~~~l~~yf~L 112 (311)
+.+||++.+|.. ++++.|.. ++.|. .+ +++. ++.|++.++ ..+.+++..+ +..+++.+.+++||+|
T Consensus 7 ~~P~~~~~~l~~l~~~~~~~~e~~~--~~~y~r~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 84 (282)
T 1mpg_A 7 QPPYDWSWMLGFLAARAVSSVETVA--DSYYARSLAVGEYRGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDL 84 (282)
T ss_dssp CSCCCHHHHHHHHHHHCCTTTEEEC--SSCEEEEEEETTEEEEEEEEEETTTTEEEEEECGGGGGGHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHhCCCCCCeEEEc--CCEEEEEEEECCEeEEEEEEEcCCCcEEEEEEecCCCccHHHHHHHHHHHHcC
Confidence 457999999987 88777653 34555 33 3444 889998643 3466666532 2356788999999999
Q ss_pred CCCHHHHHHHHhccChhHHHHHHHhcCCccCC-CCHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCCCccccccccccC
Q 021493 113 GISLGELWEGFSASDCRFAELAKYLAGARVLR-QDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEF 190 (311)
Q Consensus 113 d~dl~~~~~~l~~~D~~l~~~~~~~~GlR~l~-~dpfe~Li~~IlsQq~~i~~a~~~~~~L~-~~G~~~~~~~~~~~~~F 190 (311)
|.|+..+++.+. .+.+.++|+|+++ +||||+||++|||||+++++|.+++++|+ +||+++.. .+ .++.|
T Consensus 85 d~d~~~~~~~l~-------~l~~~~~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~-~~-~~~~f 155 (282)
T 1mpg_A 85 QCNPQIVNGALG-------RLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDD-FP-EYICF 155 (282)
T ss_dssp TCCHHHHHHHHG-------GGGTTCTTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSS-CT-TCBCC
T ss_pred CCCHHHHHHHHH-------HHHHHcCCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCC-CC-CcccC
Confidence 999999987654 4567789999988 99999999999999999999999999999 89998743 33 58999
Q ss_pred CCHHHHhcCCHHHHHHcCC-chHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcC
Q 021493 191 PSLERLSLVSEVELRNAGF-GYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLD 269 (311)
Q Consensus 191 Ptpe~La~~~~e~Lr~~Gl-g~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~ 269 (311)
|||++|+++++++|+.||+ ++||+||+++|+.+.+ |.++++.+ +++++++++|++|||||+|||+||++|++|
T Consensus 156 Ptp~~la~~~~~~Lr~~G~~~~ra~~i~~~A~~~~~----~~~~~~~~--~~~~~~~~~L~~lpGIG~~TA~~ill~~lg 229 (282)
T 1mpg_A 156 PTPQRLAAADPQALKALGMPLKRAEALIHLANAALE----GTLPMTIP--GDVEQAMKTLQTFPGIGRWTANYFALRGWQ 229 (282)
T ss_dssp CCHHHHHTCCHHHHHHTTSCHHHHHHHHHHHHHHHH----TCSCSSCC--SCHHHHHHHHTTSTTCCHHHHHHHHHHHSC
T ss_pred CCHHHHHcCCHHHHHHcCCCHHHHHHHHHHHHHHHc----CCCCcccc--CCHHHHHHHHhcCCCcCHHHHHHHHHHhCC
Confidence 9999999999999999999 5899999999999998 44455544 688999999999999999999999999999
Q ss_pred CCCccccchHHHHHHHHcCCCcccCCCCCHHHHHHHHHHhh
Q 021493 270 QHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFC 310 (311)
Q Consensus 270 ~~d~fPVDt~v~Ri~~r~~~~~~~~~~~t~k~y~~i~~~~~ 310 (311)
++|+||||+|+.| +++. ..++++.+++.+.|+
T Consensus 230 ~~d~~pvdd~~~r--~~l~-------~~~~~~~~~~~~~~~ 261 (282)
T 1mpg_A 230 AKDVFLPDDYLIK--QRFP-------GMTPAQIRRYAERWK 261 (282)
T ss_dssp CSSCCCTTCHHHH--HHST-------TCCHHHHHHHHGGGT
T ss_pred CCCcCccccHHHH--HHhc-------cCCHHHHHHHHHHcC
Confidence 9999999887755 3441 467788888888875
No 6
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-37 Score=278.86 Aligned_cols=180 Identities=18% Similarity=0.213 Sum_probs=161.3
Q ss_pred CHHHHHHHHhccChhHHHHHHHhcCCccC---CC-CHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCccccccccccC
Q 021493 115 SLGELWEGFSASDCRFAELAKYLAGARVL---RQ-DPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEF 190 (311)
Q Consensus 115 dl~~~~~~l~~~D~~l~~~~~~~~GlR~l---~~-dpfe~Li~~IlsQq~~i~~a~~~~~~L~~~G~~~~~~~~~~~~~F 190 (311)
|+++++++|+..||.|+++++.++|+|+. ++ ||||+||++||+||+++++|.+++++|..||. -+.|
T Consensus 14 ~~~~~~~~L~~~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL~~~Gg---------~~~f 84 (228)
T 3s6i_A 14 SLTKAEIHLSGLDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRFKSISN---------NGQF 84 (228)
T ss_dssp --CHHHHHHHTSCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSG---------GGSC
T ss_pred HHHHHHHHHHhhChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHHHHhcC---------CCCC
Confidence 56788899998999999999999999984 46 99999999999999999999999999933641 1689
Q ss_pred CCHHHHhcCCHHHHHHcCCch-HHHHHHHHHHHHHHhcCCCcc-chhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhc
Q 021493 191 PSLERLSLVSEVELRNAGFGY-RAKYITGTVDVLQSKHSGGAE-WLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSL 268 (311)
Q Consensus 191 Ptpe~La~~~~e~Lr~~Glg~-RA~~I~~~A~~i~~~~~gg~~-~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l 268 (311)
|||++|+++++++|+.|||++ ||+||+++|+.+.+ |.+ +++.|.++++++++++|++|||||+|||+|||+|++
T Consensus 85 Ptp~~la~~~~e~Lr~~G~~~rKa~~i~~~A~~~~~----g~~p~~~~l~~~~~~e~~~~L~~l~GIG~~TA~~ill~~l 160 (228)
T 3s6i_A 85 PTPEEIRDMDFEIMRACGFSARKIDSLKSIAEATIS----GLIPTKEEAERLSNEELIERLTQIKGIGRWTVEMLLIFSL 160 (228)
T ss_dssp CCHHHHHHSCHHHHHHHTCCHHHHHHHHHHHHHHHH----TSSCCHHHHTTSCHHHHHHHHTTSTTCCHHHHHHHHHHTS
T ss_pred CCHHHHHcCCHHHHHHcCCCHHHHHHHHHHHHHHHc----CCCCChHHHhcCCHHHHHHHHHhCCCcCHHHHHHHHHHhC
Confidence 999999999999999999997 79999999999997 666 789999999999999999999999999999999999
Q ss_pred CCCCccccc-hHHHHHHHHcCCCcccCCCCCHHHHHHHHHHhh
Q 021493 269 DQHHAIPVD-THVWKIATRYLLPELAGVRLTPKLCSRVAEAFC 310 (311)
Q Consensus 269 ~~~d~fPVD-t~v~Ri~~r~~~~~~~~~~~t~k~y~~i~~~~~ 310 (311)
|++|+|||| .|++|++.++|.. .+.++++++.++++.|+
T Consensus 161 g~pd~fpvdD~~v~r~~~~~~~~---~~~~~~~~~~~~~e~w~ 200 (228)
T 3s6i_A 161 NRDDVMPADDLSIRNGYRYLHRL---PKIPTKMYVLKHSEICA 200 (228)
T ss_dssp CCSSCCCTTCHHHHHHHHHHTTC---SSCCCHHHHHHHHGGGT
T ss_pred CCCCEEecccHHHHHHHHHHhCC---CCCCCHHHHHHHHHHhC
Confidence 999999995 5789999998753 34678999999999986
No 7
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=100.00 E-value=6.2e-37 Score=276.77 Aligned_cols=176 Identities=17% Similarity=0.170 Sum_probs=159.2
Q ss_pred hhcCCCCHHHHHHHHhccChhHHHHHHHhcCC-c-cCCCCHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCCCcccccc
Q 021493 109 FLNMGISLGELWEGFSASDCRFAELAKYLAGA-R-VLRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGF 185 (311)
Q Consensus 109 yf~Ld~dl~~~~~~l~~~D~~l~~~~~~~~Gl-R-~l~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~-~~G~~~~~~~~~ 185 (311)
+..-+.++.+.++++...||.++.+++.++|+ + ...+||||+||++|||||++++++.+++++|+ .||+
T Consensus 21 ~~~~~~~~~~~~~~l~~~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~-------- 92 (225)
T 2yg9_A 21 AVLPPLTDHAGAVAHLSRDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGG-------- 92 (225)
T ss_dssp CCCCCCSCSHHHHHHHTTSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTC--------
T ss_pred cCCChhhHHHHHHHHHhcCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCc--------
Confidence 34556778889999989999999999999999 5 55799999999999999999999999999998 5663
Q ss_pred ccccCCCHHHHhcCCHHHHHHcCCch-HHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHH
Q 021493 186 EFHEFPSLERLSLVSEVELRNAGFGY-RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 186 ~~~~FPtpe~La~~~~e~Lr~~Glg~-RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vl 264 (311)
|||++|+++++++|+.|||++ ||+||+++|+.+.+ |.++++.|.++++++++++|++|||||+|||+||+
T Consensus 93 -----ptp~~la~~~~e~Lr~~G~~~~KA~~i~~lA~~~~~----g~~~l~~l~~~~~~e~~~~L~~l~GIG~~TA~~il 163 (225)
T 2yg9_A 93 -----VVPAALLKVSGDDLRGVGLSWAKVRTVQAAAAAAVS----GQIDFAHLSGQPDELVIAELVQLPGIGRWTAEMFL 163 (225)
T ss_dssp -----SCHHHHTTSCHHHHHHTTCCHHHHHHHHHHHHHHHT----TSSCGGGCTTSCHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred -----CCHHHHHcCCHHHHHHCCCcHHHHHHHHHHHHHHHh----CCcCHHHHhcCCHHHHHHHHHcCCCCCHHHHHHHH
Confidence 899999999999999999986 99999999999998 77899999999999999999999999999999999
Q ss_pred HHhcCCCCcccc-chHHHHHHHHcCCCcccCCCCCHHHHHHHHHHhh
Q 021493 265 LFSLDQHHAIPV-DTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFC 310 (311)
Q Consensus 265 Lf~l~~~d~fPV-Dt~v~Ri~~r~~~~~~~~~~~t~k~y~~i~~~~~ 310 (311)
+|++|++|+||| |+||+|+++++| + ++..+++.+.|+
T Consensus 164 l~~lg~~d~fpv~D~~v~r~~~~l~-~--------~~~~~~~~e~~~ 201 (225)
T 2yg9_A 164 LFALARPDVFSSGDLALRQGVERLY-P--------GEDWRDVTARWA 201 (225)
T ss_dssp HHTSCCSCCCCTTCHHHHHHHHHHS-T--------TSCHHHHHHHHT
T ss_pred HHhCCCCCeeeCccHHHHHHHHHhC-C--------HHHHHHHHHHcC
Confidence 999999999999 999999999998 1 234666677664
No 8
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=100.00 E-value=7.5e-36 Score=271.01 Aligned_cols=183 Identities=19% Similarity=0.286 Sum_probs=160.7
Q ss_pred HhhcCCCCHHHHHHHHhccChhHHHHHHHhcCCcc-CCCCHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCCCcccccc
Q 021493 108 DFLNMGISLGELWEGFSASDCRFAELAKYLAGARV-LRQDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGF 185 (311)
Q Consensus 108 ~yf~Ld~dl~~~~~~l~~~D~~l~~~~~~~~GlR~-l~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~-~~G~~~~~~~~~ 185 (311)
+||+.. ...++.+...|+.++.+++.++|++. ..+||||+||++|||||++++++.+++.+|. .||.
T Consensus 14 ~~~~~~---~~~~~~l~~~d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~-------- 82 (233)
T 2h56_A 14 RYFSTD---SPEVKTIVAQDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGG-------- 82 (233)
T ss_dssp EEECTT---SHHHHHHHTTCHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTS--------
T ss_pred HHhhhH---HHHHHHHHhcCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--------
Confidence 455543 34556777899999999999999986 5799999999999999999999999999998 7885
Q ss_pred ccccCCCHHHHhcCCHHHHHHcCCch-HHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHH
Q 021493 186 EFHEFPSLERLSLVSEVELRNAGFGY-RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 186 ~~~~FPtpe~La~~~~e~Lr~~Glg~-RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vl 264 (311)
.||||++|+++++++|+.+||++ ||+||+++|+.+.+ |.++++.+.++++++++++|++|||||+|||+|||
T Consensus 83 ---~fPtp~~la~~~~e~Lr~~G~~~~KA~~I~~~A~~i~~----~~~~~~~l~~~p~~~~~~~L~~lpGIG~kTA~~il 155 (233)
T 2h56_A 83 ---ALEKPEQLYRVSDEALRQAGVSKRKIEYIRHVCEHVES----GRLDFTELEGAEATTVIEKLTAIKGIGQWTAEMFM 155 (233)
T ss_dssp ---CCCCTHHHHTSCHHHHHHTTCCHHHHHHHHHHHHHHHT----TSSCHHHHTTSCHHHHHHHHHTSTTCCHHHHHHHH
T ss_pred ---CCCCHHHHHcCCHHHHHHcCCCHHHHHHHHHHHHHHHh----CCCCHHHHhcCCHHHHHHHHHhCCCcCHHHHHHHH
Confidence 27999999999999999999997 89999999999998 55678889999999999999999999999999999
Q ss_pred HHhcCCCCccccchHHHHHHHHcCCCcccCCCCCHHHHHHHHHHhh
Q 021493 265 LFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAFC 310 (311)
Q Consensus 265 Lf~l~~~d~fPVDt~v~Ri~~r~~~~~~~~~~~t~k~y~~i~~~~~ 310 (311)
+|++|++|+||||+|+.|++.++++. .++..++++++++.+.|.
T Consensus 156 l~alg~pd~~pvdd~~~r~~~~~~~~--~~~~~~~~~~~~~~e~~~ 199 (233)
T 2h56_A 156 MFSLGRLDVLSVGDVGLQRGAKWLYG--NGEGDGKKLLIYHGKAWA 199 (233)
T ss_dssp HHTTCCSCCCCTTCHHHHHHHHHHHS--SSCSCHHHHHHHHHGGGT
T ss_pred HHhCCCCCeeeCchHHHHHHHHHhcc--CCCCCCHHHHHHHHHHcC
Confidence 99999999999999998888776432 124578889999888885
No 9
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=99.96 E-value=1.4e-29 Score=226.44 Aligned_cols=152 Identities=20% Similarity=0.254 Sum_probs=127.5
Q ss_pred hhHHHHHHHhcCC--ccCCCCHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCccccccccccCCCHHHHhcCCHHHH-
Q 021493 128 CRFAELAKYLAGA--RVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVEL- 204 (311)
Q Consensus 128 ~~l~~~~~~~~Gl--R~l~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~~~G~~~~~~~~~~~~~FPtpe~La~~~~e~L- 204 (311)
+.++.+.+.+++. .+..+||||.||++|||||++++++.+++.+| +..||||++|+++++++|
T Consensus 8 ~i~~~L~~~~~~~~~~~~~~~pfe~lv~~Il~qqts~~~v~~~~~~l--------------~~~fpt~~~la~a~~~~l~ 73 (211)
T 2abk_A 8 EILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKL--------------YPVANTPAAMLELGVEGVK 73 (211)
T ss_dssp HHHHHHHHHCSSCCCSSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHH--------------TTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH--------------HHHCCCHHHHHCCCHHHHH
Confidence 3556677777654 35679999999999999999999999999987 357999999999999986
Q ss_pred ---HHcCCc-hHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcCCCCccccchHH
Q 021493 205 ---RNAGFG-YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHV 280 (311)
Q Consensus 205 ---r~~Glg-~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fPVDt~v 280 (311)
+.+|++ .||+||+++|+.+.++++| +.++++++|++|||||+|||+||++|++|++ +||||+|+
T Consensus 74 ~~i~~~G~~~~KA~~l~~~a~~~~~~~~g-----------~~~~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~vD~~v 141 (211)
T 2abk_A 74 TYIKTIGLYNSKAENIIKTCRILLEQHNG-----------EVPEDRAALEALPGVGRKTANVVLNTAFGWP-TIAVDTHI 141 (211)
T ss_dssp HHHTTSTTHHHHHHHHHHHHHHHHHHTTT-----------SCCSCHHHHHHSTTCCHHHHHHHHHHHHCCC-CCCCCHHH
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHcCC-----------CchHHHHHHHhCCCCChHHHHHHHHHHCCCC-cCCcCHHH
Confidence 457876 4999999999999987654 3356899999999999999999999999996 99999999
Q ss_pred HHHHHHcCCCcccCCCCCHHHHHHHHHHh
Q 021493 281 WKIATRYLLPELAGVRLTPKLCSRVAEAF 309 (311)
Q Consensus 281 ~Ri~~r~~~~~~~~~~~t~k~y~~i~~~~ 309 (311)
.|++.|+|+.. ..++++.++..+.|
T Consensus 142 ~Rv~~rlgl~~----~~~~~~~~~~~~~~ 166 (211)
T 2abk_A 142 FRVCNRTQFAP----GKNVEQVEEKLLKV 166 (211)
T ss_dssp HHHHHHHCSSC----CSSHHHHHHHHHHH
T ss_pred HHHHHHhCCCC----CCCHHHHHHHHHHh
Confidence 99999998642 34666666666555
No 10
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=99.96 E-value=2.6e-29 Score=227.04 Aligned_cols=152 Identities=25% Similarity=0.322 Sum_probs=126.4
Q ss_pred hHHHHHHHhcCC--ccCCCCHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCccccccccccCCCHHHHhcCCHHHH--
Q 021493 129 RFAELAKYLAGA--RVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVEL-- 204 (311)
Q Consensus 129 ~l~~~~~~~~Gl--R~l~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~~~G~~~~~~~~~~~~~FPtpe~La~~~~e~L-- 204 (311)
.+..+.+.+++. ++..+||||.||++|||||++++++.+++.+|. ..||||++|+++++++|
T Consensus 13 i~~~L~~~y~~~~~~l~~~~pfe~Lv~~IlsQqts~~~v~~~~~~l~--------------~~fpt~~~la~a~~~~l~~ 78 (226)
T 1orn_A 13 CLDEMAKMFPDAHCELVHRNPFELLIAVVLSAQCTDALVNKVTKRLF--------------EKYRTPHDYIAVPLEELEQ 78 (226)
T ss_dssp HHHHHHHHCTTCCCCSCCSSHHHHHHHHHHHTTSCHHHHHHHHHHHH--------------HHCCSHHHHHSSCHHHHHH
T ss_pred HHHHHHHHcCccCCCCCCCCHHHHHHHHHHhCCCcHHHHHHHHHHHH--------------HHCCCHHHHHcCCHHHHHH
Confidence 456666777665 456799999999999999999999999999884 46899999999999985
Q ss_pred --HHcCCc-hHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcCCCCccccchHHH
Q 021493 205 --RNAGFG-YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVW 281 (311)
Q Consensus 205 --r~~Glg-~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fPVDt~v~ 281 (311)
+.+||+ .||+||+++|+.+.++++| +.++++++|++|||||+|||+||++|++|+ ++||||+|+.
T Consensus 79 ~i~~~G~~~~KA~~l~~~a~~i~~~~~g-----------~~p~~~~~L~~lpGIG~~TA~~il~~a~g~-~~~~vD~~v~ 146 (226)
T 1orn_A 79 DIRSIGLYRNKARNIQKLCAMLIDKYNG-----------EVPRDRDELMKLPGVGRKTANVVVSVAFGV-PAIAVDTHVE 146 (226)
T ss_dssp HTGGGSSHHHHHHHHHHHHHHHHHHSTT-----------SCCSCHHHHTTSTTCCHHHHHHHHHHHHCC-CCCCCCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHHhCC-----------CcHHHHHHHHHCCCccHHHHHHHHHHHCCC-ceeeeCHHHH
Confidence 678987 5999999999999987764 234589999999999999999999999999 5999999999
Q ss_pred HHHHHcCCCcccCCCCCHHHHHHHHHHh
Q 021493 282 KIATRYLLPELAGVRLTPKLCSRVAEAF 309 (311)
Q Consensus 282 Ri~~r~~~~~~~~~~~t~k~y~~i~~~~ 309 (311)
|++.|+|+.. ...++++.++..+.|
T Consensus 147 Rv~~rlg~~~---~~~~~~~~~~~l~~~ 171 (226)
T 1orn_A 147 RVSKRLGFCR---WDDSVLEVEKTLMKI 171 (226)
T ss_dssp HHHHHHTSSC---TTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCC---CCCCHHHHHHHHHHh
Confidence 9999998642 134555555544433
No 11
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=99.95 E-value=5.3e-28 Score=217.66 Aligned_cols=141 Identities=19% Similarity=0.289 Sum_probs=119.4
Q ss_pred CCCCHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCccccccccccCCCHHHHhcCCHHHH----HHcCCc-hHHHHHH
Q 021493 143 LRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVEL----RNAGFG-YRAKYIT 217 (311)
Q Consensus 143 l~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~~~G~~~~~~~~~~~~~FPtpe~La~~~~e~L----r~~Glg-~RA~~I~ 217 (311)
..+||||.||++|+|||++++++.+++.+|. ..||||++|+++++++| +.+|++ .||+||+
T Consensus 31 ~~~~pfe~lv~~IlsQqts~~~~~~~~~~l~--------------~~fptp~~la~a~~e~l~~~i~~~G~~~~KA~~l~ 96 (221)
T 1kea_A 31 HTRDPYVILITEILLRRTTAGHVKKIYDKFF--------------VKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLK 96 (221)
T ss_dssp GCCCHHHHHHHHHHTTTSCHHHHHHHHHHHH--------------HHCCSHHHHHHSCHHHHHHHTGGGSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH--------------HHCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 3589999999999999999999999999985 35899999999999998 678987 5999999
Q ss_pred HHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcCCCCccccchHHHHHHHHc-CCCcccCCC
Q 021493 218 GTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRY-LLPELAGVR 296 (311)
Q Consensus 218 ~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fPVDt~v~Ri~~r~-~~~~~~~~~ 296 (311)
++|+.+.++++| +.++++++|++|||||+|||+||++|++++ ++||||+||+|++.|+ ++.... ..
T Consensus 97 ~~a~~i~~~~~g-----------~~p~~~~~L~~lpGIG~~TA~~il~~~~~~-~~~~vD~~v~Rv~~rl~gl~~~~-~~ 163 (221)
T 1kea_A 97 ELARVVINDYGG-----------RVPRNRKAILDLPGVGKYTCAAVMCLAFGK-KAAMVDANFVRVINRYFGGSYEN-LN 163 (221)
T ss_dssp HHHHHHHHHHTT-----------SCCSCHHHHHTSTTCCHHHHHHHHHHTTCC-CCCCCCHHHHHHHHHHHCGGGTT-CC
T ss_pred HHHHHHHHHhCC-----------CchHHHHHHHhCCCCcHHHHHHHHHHhcCC-CcceecHHHHHHHHHHhCCCCCC-Cc
Confidence 999999987754 234678999999999999999999999999 5899999999999998 554322 22
Q ss_pred CCHHHHHHHHHHhh
Q 021493 297 LTPKLCSRVAEAFC 310 (311)
Q Consensus 297 ~t~k~y~~i~~~~~ 310 (311)
...++..++++.|.
T Consensus 164 ~~~~~l~~~ae~~~ 177 (221)
T 1kea_A 164 YNHKALWELAETLV 177 (221)
T ss_dssp TTSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhC
Confidence 22567777777663
No 12
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=99.95 E-value=2.6e-28 Score=219.34 Aligned_cols=130 Identities=15% Similarity=0.224 Sum_probs=111.2
Q ss_pred CCCHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCccccccccccCCCHHHHhcCCHHHH----HHcCCch-HHHHH
Q 021493 144 RQDPVECLLQFLCSSNNNIARITKMVDFLAS--LGSHLGNVEGFEFHEFPSLERLSLVSEVEL----RNAGFGY-RAKYI 216 (311)
Q Consensus 144 ~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~~--~G~~~~~~~~~~~~~FPtpe~La~~~~e~L----r~~Glg~-RA~~I 216 (311)
.+||||+||++|||||++++++.+++.+|.+ |++. ..||||++|+++++++| +.+||++ ||+||
T Consensus 27 ~~dpfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~---------~~~~t~~~la~~~~e~L~~~ir~~G~~~~KA~~L 97 (218)
T 1pu6_A 27 NALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILEN---------DDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRL 97 (218)
T ss_dssp TTTSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCS---------CHHHHHHHHHHSCHHHHHHHTGGGSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCc---------cccccHHHHHhCCHHHHHHHHHHCCCcHHHHHHH
Confidence 4899999999999999999999999999972 2211 01334999999999998 6789975 99999
Q ss_pred HHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcCCCCccccchHHHHHHHHcCCC
Q 021493 217 TGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLP 290 (311)
Q Consensus 217 ~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fPVDt~v~Ri~~r~~~~ 290 (311)
+++|+.+.++++| ++ .++.++++++|++|||||+|||+||++|++++ ++||||+|++|++.|+|+.
T Consensus 98 ~~~a~~i~~~~~~----l~---~~~~~~~~~~L~~lpGIG~kTA~~il~~a~~~-~~~~vD~~v~Ri~~rlg~~ 163 (218)
T 1pu6_A 98 IDLSGNILKDFQS----FE---NFKQEVTREWLLDQKGIGKESADAILCYACAK-EVMVVDKYSYLFLKKLGIE 163 (218)
T ss_dssp HHHHHHHHHHHSS----HH---HHHHHCCHHHHHTSTTCCHHHHHHHHHHTTCC-SCCCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCC----hh---hccchHHHHHHHcCCCcCHHHHHHHHHHHCCC-CccccCHHHHHHHHHcCCC
Confidence 9999999986643 33 34678899999999999999999999999999 5999999999999999864
No 13
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=99.95 E-value=4.4e-28 Score=218.75 Aligned_cols=140 Identities=20% Similarity=0.323 Sum_probs=114.2
Q ss_pred CCCHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCccccccccccCCCHHHHhcCCHHHHHH----cCCchHHHHHHHH
Q 021493 144 RQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRN----AGFGYRAKYITGT 219 (311)
Q Consensus 144 ~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~~~G~~~~~~~~~~~~~FPtpe~La~~~~e~Lr~----~Glg~RA~~I~~~ 219 (311)
.+||||.||++|||||++++++.+++.+|. ..||||++|+++++++|++ +|+..||+||+++
T Consensus 27 ~~~pfe~lv~~IlsQqt~~~~v~~~~~~l~--------------~~~pt~~~la~~~~~~l~~~i~~~G~~~kA~~l~~~ 92 (225)
T 1kg2_A 27 DKTPYKVWLSEVMLQQTQVATVIPYFERFM--------------ARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKA 92 (225)
T ss_dssp SCCHHHHHHHHHHHTSSCHHHHHHHHHHHH--------------HHCSSHHHHHHSCHHHHHHHHTTSCCTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCcCCHHHHHHHHHHHH--------------HHCCCHHHHHCCCHHHHHHHHHhCChHHHHHHHHHH
Confidence 489999999999999999999999999873 4689999999999999965 5665599999999
Q ss_pred HHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcCCCCccccchHHHHHHHHcCC-CcccCCCCC
Q 021493 220 VDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLL-PELAGVRLT 298 (311)
Q Consensus 220 A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fPVDt~v~Ri~~r~~~-~~~~~~~~t 298 (311)
|+.+.++++| +.++++++|++|||||+|||+||++|++|++ +||||+||+|++.|+|+ ........+
T Consensus 93 a~~i~~~~~g-----------~~p~~~~~L~~lpGIG~~TA~~il~~a~~~~-~~~vD~~v~Rv~~rl~~~~~~~~~~~~ 160 (225)
T 1kg2_A 93 AQQVATLHGG-----------KFPETFEEVAALPGVGRSTAGAILSLSLGKH-FPILDGNVKRVLARCYAVSGWPGKKEV 160 (225)
T ss_dssp HHHHHHHSTT-----------SCCCSHHHHHTSTTCCHHHHHHHHHHHHCCS-CCCCCHHHHHHHHHHHTCCSCTTSHHH
T ss_pred HHHHHHHhCC-----------CchHHHHHHhcCCCCcHHHHHHHHHHhCCCC-cceeCHHHHHHHHHHcCCCCCCCccch
Confidence 9999987754 2234789999999999999999999999996 67899999999999863 322112223
Q ss_pred HHHHHHHHHHh
Q 021493 299 PKLCSRVAEAF 309 (311)
Q Consensus 299 ~k~y~~i~~~~ 309 (311)
.+++.++++.|
T Consensus 161 ~~~l~~~~~~~ 171 (225)
T 1kg2_A 161 ENKLWSLSEQV 171 (225)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455545444
No 14
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=99.95 E-value=3.6e-28 Score=216.76 Aligned_cols=161 Identities=16% Similarity=0.141 Sum_probs=124.5
Q ss_pred HHHHHHHhc-CCccCCCCHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCccccccccccCCCHHHHhcCCHHHHHHcC
Q 021493 130 FAELAKYLA-GARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAG 208 (311)
Q Consensus 130 l~~~~~~~~-GlR~l~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~~~G~~~~~~~~~~~~~FPtpe~La~~~~e~Lr~~G 208 (311)
+....+.|. +.....+||||+||++|||||++++++.+++++| ++. ...+++++|. +.|+.+|
T Consensus 15 v~~~~~~f~~~~~~~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L---~~~---------l~~~~~e~l~----~~ir~~G 78 (207)
T 3fhg_A 15 VLERVDEFRLNNLSNEEVWFRELTLCLLTANSSFISAYQALNCL---GQK---------IYYANEEEIR----NILKSCK 78 (207)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH---GGG---------GGTCCHHHHH----HHHHHTT
T ss_pred HHHHHHHHhhccCCCcCCHHHHHHHHHHcCCCCHHHHHHHHHHH---HHH---------HHcCCHHHHH----HHHHHhc
Confidence 334444442 2233458999999999999999999999999987 211 1233444442 2367788
Q ss_pred Cch---HHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcCCCCccccchHHHHHHH
Q 021493 209 FGY---RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIAT 285 (311)
Q Consensus 209 lg~---RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fPVDt~v~Ri~~ 285 (311)
+|| ||+||+++|+.+.+..+ .+++.+..+++++++++|+++||||+|||+|||+|. ++.++||||+|++|++.
T Consensus 79 ~g~~~~KA~~l~~~a~~~~~~~~---~~l~~~~~~~~~~~~~~L~~lpGIG~kTA~~il~~~-~~~~~~~vD~~v~Ri~~ 154 (207)
T 3fhg_A 79 YRFYNLKAKYIIMAREKVYGRLK---EEIKPLADEDQQLARERLLNIKGIGMQEASHFLRNV-GYFDLAIIDRHIIDFMR 154 (207)
T ss_dssp CTTHHHHHHHHHHHHHHHTTTHH---HHHHHHHHHCHHHHHHHHTTSTTCCHHHHHHHHHHT-TCCSSCCCCHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHhh---hhHHHHhCCCHHHHHHHHHcCCCcCHHHHHHHHHHh-CCCCcceecHHHHHHHH
Confidence 653 99999999998875221 257788888999999999999999999999999983 33689999999999999
Q ss_pred HcCCCcc-cCCCCCHHHHHHHHHHhh
Q 021493 286 RYLLPEL-AGVRLTPKLCSRVAEAFC 310 (311)
Q Consensus 286 r~~~~~~-~~~~~t~k~y~~i~~~~~ 310 (311)
|+|+.+. ..+..|++.|.++.+.++
T Consensus 155 rlg~~~~~~~k~~~~k~y~~~~~~l~ 180 (207)
T 3fhg_A 155 RIGAIGETNVKQLSKSLYISFENILK 180 (207)
T ss_dssp HTTSSCCCCCSCCCHHHHHHHHHHHH
T ss_pred HcCCCCccccccCCHHHHHHHHHHHH
Confidence 9987643 357899999999998875
No 15
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=99.95 E-value=6.6e-28 Score=216.60 Aligned_cols=154 Identities=19% Similarity=0.094 Sum_probs=128.9
Q ss_pred hhHHHHHHHhcCCc--cCCCCHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCccccccccccCCCHHHHhcCCHHH--
Q 021493 128 CRFAELAKYLAGAR--VLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVE-- 203 (311)
Q Consensus 128 ~~l~~~~~~~~GlR--~l~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~~~G~~~~~~~~~~~~~FPtpe~La~~~~e~-- 203 (311)
+.+....+.|.++. -...+||+.||++|||||++.+++.++.++| |+.|+.+++++
T Consensus 29 ~~i~~r~~ef~~~~~~~~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L--------------------p~~l~~~~~eeL~ 88 (219)
T 3n0u_A 29 PLVEQRFEEFKRLGEEGTEEDLFCELSFCVLTANWSAEGGIRAQKEI--------------------GKGFVHLPLEELA 88 (219)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTTSCHHHHHHHHHHH--------------------TTHHHHCCHHHHH
T ss_pred HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHH--------------------HHHHHcCCHHHHH
Confidence 44555556665544 2458999999999999999999999988865 45677777776
Q ss_pred --HHHcC--Cc-hHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhh-cCCccchHHHHHHHHHhcCCCCccccc
Q 021493 204 --LRNAG--FG-YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALC-TLPGVGPKVAACIALFSLDQHHAIPVD 277 (311)
Q Consensus 204 --Lr~~G--lg-~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~-~l~GIG~ktAd~vlLf~l~~~d~fPVD 277 (311)
||.+| |. .||+||+++|+.+ | ++..+.++++++++++|+ ++||||+|||+|||+| +++.++||||
T Consensus 89 ~~Ir~~G~Rf~~~KA~~I~~~a~~i-----g---~l~~~~~~~~~~~r~~L~~~l~GVG~kTA~~vL~~-~g~~~~~~VD 159 (219)
T 3n0u_A 89 EKLREVGHRYPQKRAEFIVENRKLL-----G---KLKNLVKGDPFQSREFLVRNAKGIGWKEASHFLRN-TGVEDLAILD 159 (219)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHGGGT-----T---THHHHHHSCHHHHHHHHHHHSTTCCHHHHHHHHHT-TTCCSCCCCC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHH-----H---HHHHHhcCCcHHHHHHHHHhCCCCCHHHHHHHHHH-cCCCCeeeec
Confidence 58899 76 4999999999977 1 355566789999999999 9999999999999999 7888999999
Q ss_pred hHHHHHHHHcCCCcccCCCCCHHHHHHHHHHhh
Q 021493 278 THVWKIATRYLLPELAGVRLTPKLCSRVAEAFC 310 (311)
Q Consensus 278 t~v~Ri~~r~~~~~~~~~~~t~k~y~~i~~~~~ 310 (311)
+||.|++.|+|+.+...+++|++.|.++++.|+
T Consensus 160 thv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~ 192 (219)
T 3n0u_A 160 KHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILR 192 (219)
T ss_dssp HHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCcCcCCHHHHHHHHHHHH
Confidence 999999999987655568999999999999886
No 16
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=99.94 E-value=7.9e-27 Score=217.13 Aligned_cols=121 Identities=19% Similarity=0.253 Sum_probs=107.2
Q ss_pred CCHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCccccccccccCCCHHHHhcCCHHHH----HHcCCchHHHHHHHHH
Q 021493 145 QDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVEL----RNAGFGYRAKYITGTV 220 (311)
Q Consensus 145 ~dpfe~Li~~IlsQq~~i~~a~~~~~~L~~~G~~~~~~~~~~~~~FPtpe~La~~~~e~L----r~~Glg~RA~~I~~~A 220 (311)
+||||.||++||+||++++++..++.+|. ..||||++|+++++++| +.+|+..||+||+++|
T Consensus 47 ~dpfe~LVs~ILsQQts~~~v~~~~~rL~--------------~~fptpe~La~a~~eel~~~ir~lG~~~KA~~L~~~A 112 (287)
T 3n5n_X 47 RRAYAVWVSEVMLQQTQVATVINYYTGWM--------------QKWPTLQDLASASLEEVNQLWAGLGYYSRGRRLQEGA 112 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHH--------------HHCCSHHHHHTSCHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCcHHHHHHHHHHHH--------------HHCCCHHHHHcCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 68999999999999999999999999884 45899999999999988 4567766999999999
Q ss_pred HHHHHhcCCCccchhhhhCCCHHHHHHHhhc-CCccchHHHHHHHHHhcCCCCccccchHHHHHHHHcCCCc
Q 021493 221 DVLQSKHSGGAEWLLSLRKLDLQEAIDALCT-LPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPE 291 (311)
Q Consensus 221 ~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~-l~GIG~ktAd~vlLf~l~~~d~fPVDt~v~Ri~~r~~~~~ 291 (311)
+.+.++++| . .++.+++|++ |||||+|||+|||+|++|+ ++||||+||+|++.|+|+.+
T Consensus 113 ~~i~~~~~g-~----------~p~~~~~Ll~~LpGIG~kTA~~iL~~a~g~-p~~~VDt~V~Rv~~Rlg~i~ 172 (287)
T 3n5n_X 113 RKVVEELGG-H----------MPRTAETLQQLLPGVGRYTAGAIASIAFGQ-ATGVVDGNVARVLCRVRAIG 172 (287)
T ss_dssp HHHHHHSTT-C----------CCSSHHHHHHHSTTCCHHHHHHHHHHHSCC-CCCCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHhCC-C----------CcHHHHHHHHHcCCCCHHHHHHHHHHhcCC-CCccccHHHHHHHHHhCCCC
Confidence 999998765 2 2235889998 9999999999999999999 58899999999999998653
No 17
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=99.93 E-value=3.3e-26 Score=220.22 Aligned_cols=140 Identities=19% Similarity=0.327 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCccccccccccCCCHHHHhcCCHHHH----HHcCCchHHHHHHHH
Q 021493 144 RQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVEL----RNAGFGYRAKYITGT 219 (311)
Q Consensus 144 ~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~~~G~~~~~~~~~~~~~FPtpe~La~~~~e~L----r~~Glg~RA~~I~~~ 219 (311)
.+||||.||++||+||++++++..++.+|. ..||||++|+++++++| +.+|++.||+||+++
T Consensus 36 ~~~p~~~lv~~il~qqt~~~~~~~~~~~l~--------------~~~pt~~~la~a~~~~l~~~i~~~G~~~ra~~l~~~ 101 (369)
T 3fsp_A 36 DRDPYKVWVSEVMLQQTRVETVIPYFEQFI--------------DRFPTLEALADADEDEVLKAWEGLGYYSRVRNLHAA 101 (369)
T ss_dssp CCCHHHHHHHHHHTTTSCHHHHHHHHHHHH--------------HHCCSHHHHHTSCHHHHHHTTTTSSCTHHHHHHHHH
T ss_pred CCChHHHHHHHHHhccCcHHHHHHHHHHHH--------------HHCCCHHHHHCCCHHHHHHHHHhcChHHHHHHHHHH
Confidence 489999999999999999999999999884 35899999999999998 457776699999999
Q ss_pred HHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcCCCCccccchHHHHHHHHcCCCccc-CCCCC
Q 021493 220 VDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELA-GVRLT 298 (311)
Q Consensus 220 A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fPVDt~v~Ri~~r~~~~~~~-~~~~t 298 (311)
|+.+.++++| +.++++++|++|||||+|||+||++|++++ .+||||+||+|++.|+|+.+.. ....+
T Consensus 102 a~~~~~~~~g-----------~~p~~~~~L~~l~GIG~~tA~~il~~~~~~-~~~~vD~~v~Rv~~rl~~~~~~~~~~~~ 169 (369)
T 3fsp_A 102 VKEVKTRYGG-----------KVPDDPDEFSRLKGVGPYTVGAVLSLAYGV-PEPAVDGNVMRVLSRLFLVTDDIAKPST 169 (369)
T ss_dssp HHHHHHHHTT-----------CCCCSHHHHHTSTTCCHHHHHHHHHHHHCC-CCCCCCHHHHHHHHHHTTCCSCTTSHHH
T ss_pred HHHHHHHcCC-----------CChhHHHHHhcCCCcCHHHHHHHHHHHCCC-CcccccHHHHHHHHHHcCcccCccccch
Confidence 9999998765 234689999999999999999999999999 5899999999999999864321 12223
Q ss_pred HHHHHHHHHHh
Q 021493 299 PKLCSRVAEAF 309 (311)
Q Consensus 299 ~k~y~~i~~~~ 309 (311)
++..++..+.|
T Consensus 170 ~~~~~~~~~~~ 180 (369)
T 3fsp_A 170 RKRFEQIVREI 180 (369)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444433
No 18
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=99.93 E-value=8.3e-26 Score=202.21 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=124.2
Q ss_pred hHHHHHHHhcCCcc-CCCCHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCccccccccccCCCHHHHhcCCHHHH---
Q 021493 129 RFAELAKYLAGARV-LRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVEL--- 204 (311)
Q Consensus 129 ~l~~~~~~~~GlR~-l~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~~~G~~~~~~~~~~~~~FPtpe~La~~~~e~L--- 204 (311)
.+...++.+.+++. ..+||||.||++|||||++++++.+++.+|. +.|+++++++|
T Consensus 25 ~i~~r~~ef~~~~~~~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~--------------------~~l~~~~~eeL~~~ 84 (214)
T 3fhf_A 25 IIDKRIQEFKSFKNKSNEEWFKELCFCILTANFTAEGGIRIQKEIG--------------------DGFLTLPREELEEK 84 (214)
T ss_dssp HHHHHHHHHHGGGGSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT--------------------THHHHSCHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCChHHHHHHHHHcCCCCHHHHHHHHHHHH--------------------HHHHCCCHHHHHHH
Confidence 34445566777774 3489999999999999999999999999881 45777777765
Q ss_pred -HHcC--Cc-hHHHHHHHHHHHHHHhcCCCccchhhhhCC-CHHHHHHHhh-cCCccchHHHHHHHHHhcCCCCccc-cc
Q 021493 205 -RNAG--FG-YRAKYITGTVDVLQSKHSGGAEWLLSLRKL-DLQEAIDALC-TLPGVGPKVAACIALFSLDQHHAIP-VD 277 (311)
Q Consensus 205 -r~~G--lg-~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~-~~~e~~~~L~-~l~GIG~ktAd~vlLf~l~~~d~fP-VD 277 (311)
+++| |. .||+||+++|+ + +. .++.+..+ +.++++++|+ ++||||+|||+|||+++ ++ +.|| ||
T Consensus 85 Ir~~G~rf~~~KA~~I~~~a~-~------~~-l~~~~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~-g~-~~~~vVD 154 (214)
T 3fhf_A 85 LKNLGHRFYRKRAEYIVLARR-F------KN-IKDIVESFENEKVAREFLVRNIKGIGYKEASHFLRNV-GY-DDVAIID 154 (214)
T ss_dssp HHHTTCTTHHHHHHHHHHHGG-G------CC-HHHHHHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHT-TC-CSCCCCC
T ss_pred HHHHhhHHHHHHHHHHHHHHH-h------hH-HHHHhcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHc-CC-CCcccCc
Confidence 7789 75 49999999999 3 11 24445554 7899999999 99999999999999998 77 7888 89
Q ss_pred hHHHHHHHHcCCCcccCCCCCHHHHHHHHHHhh
Q 021493 278 THVWKIATRYLLPELAGVRLTPKLCSRVAEAFC 310 (311)
Q Consensus 278 t~v~Ri~~r~~~~~~~~~~~t~k~y~~i~~~~~ 310 (311)
+|++|+++|+|+.+...+.+|++.|.++.+.++
T Consensus 155 thv~Ri~~RlG~~~~~~k~lt~~~y~e~~~~l~ 187 (214)
T 3fhf_A 155 RHILRELYENNYIDEIPKTLSRRKYLEIENILR 187 (214)
T ss_dssp HHHHHHHHHTTSSSSCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHHH
Confidence 999999999997654457899999999988775
No 19
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=99.88 E-value=8.7e-23 Score=175.12 Aligned_cols=113 Identities=18% Similarity=0.183 Sum_probs=99.4
Q ss_pred CCCHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCccccccccccCCCHHHHhcCCHHHH----HHcCCc-hHHHHHHH
Q 021493 144 RQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVEL----RNAGFG-YRAKYITG 218 (311)
Q Consensus 144 ~~dpfe~Li~~IlsQq~~i~~a~~~~~~L~~~G~~~~~~~~~~~~~FPtpe~La~~~~e~L----r~~Glg-~RA~~I~~ 218 (311)
..|||+.||++|||||++++++..++.+|. ..||||++|+++++++| +.+||. .||++|++
T Consensus 28 ~~dP~~vLVs~ILsqQT~~~~v~~~~~~l~--------------~~~pt~~~la~a~~~el~~~i~~lG~y~~KAk~i~~ 93 (161)
T 4e9f_A 28 FHDPWKLLIATIFLNRTSGKMAIPVLWKFL--------------EKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIVK 93 (161)
T ss_dssp TTSHHHHHHHHHHTTTSCHHHHHHHHHHHH--------------HHSCSHHHHTTSCHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHhhCcHHHHHHHHHHHH--------------HHCCCHHHHhccChHhHHhHhhhcCCHHHHHHHHHH
Confidence 479999999999999999999999999883 46899999999999988 557876 49999999
Q ss_pred HHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcCC-CCccccchHHHHHHHHcC
Q 021493 219 TVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQ-HHAIPVDTHVWKIATRYL 288 (311)
Q Consensus 219 ~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~-~d~fPVDt~v~Ri~~r~~ 288 (311)
+|+.+..+ .+++|++|||||+||||+|++||+|. ..++|+|.+++|++.+++
T Consensus 94 ~a~~~vp~------------------~~~~L~~LpGVG~yTAdav~~F~~~e~~~V~p~D~~l~r~l~wl~ 146 (161)
T 4e9f_A 94 FSDEYLTK------------------QWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLW 146 (161)
T ss_dssp HHHHHHHS------------------CCSSGGGSTTCCHHHHHHHHHHTSSCGGGCCCCSHHHHHHHHHHH
T ss_pred HhCCcCCC------------------ChhhhhcCCCchHHHHHHHHHHHCCCCCCCCCCcHHHHHHHHHHH
Confidence 99877641 24579999999999999999999996 478899999999999875
No 20
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=92.43 E-value=0.45 Score=47.92 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=52.9
Q ss_pred CCHHHHhcCCHHHHHHc-CCch-HHHHHHHHHH-------------------------HHHHhcCCCccchhhhhCCCHH
Q 021493 191 PSLERLSLVSEVELRNA-GFGY-RAKYITGTVD-------------------------VLQSKHSGGAEWLLSLRKLDLQ 243 (311)
Q Consensus 191 Ptpe~La~~~~e~Lr~~-Glg~-RA~~I~~~A~-------------------------~i~~~~~gg~~~l~~L~~~~~~ 243 (311)
-++.+|..++.++|..+ |||- +|..|.+.-+ .+.++++ +++.|...+
T Consensus 469 ~~~~Dly~L~~~~L~~l~g~geKsa~nL~~aIe~sk~~~l~r~l~aLGI~~vG~~~a~~La~~f~----sl~~l~~a~-- 542 (586)
T 4glx_A 469 HTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFG----TLEALEAAS-- 542 (586)
T ss_dssp SSGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHC----SHHHHHHCC--
T ss_pred CCHHHHhCCCHHHHhcccCccHHHHHHHHHHHHHHcCCCHHHHHHHcCCCchhHHHHHHHHHHcC----CHHHHHccC--
Confidence 47778888888888776 7874 6666654432 2222221 355555444
Q ss_pred HHHHHhhcCCccchHHHHHHHHHhcCCCCccccchHHHHHHHHc
Q 021493 244 EAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRY 287 (311)
Q Consensus 244 e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fPVDt~v~Ri~~r~ 287 (311)
.++|.+++|||+++|+.|.-|- -|.+.+.++.+|
T Consensus 543 --~e~l~~i~giG~~~A~si~~ff--------~~~~n~~~i~~L 576 (586)
T 4glx_A 543 --IEELQKVPDVGIVVASHVHNFF--------AEESNRNVISEL 576 (586)
T ss_dssp --HHHHTTSTTCCHHHHHHHHHHH--------HSHHHHHHHHHH
T ss_pred --HHHHhcCCCccHHHHHHHHHHH--------cCHHHHHHHHHH
Confidence 3579999999999999997653 345666666664
No 21
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=91.38 E-value=0.13 Score=45.16 Aligned_cols=31 Identities=35% Similarity=0.720 Sum_probs=27.8
Q ss_pred CHHHHHHHhhcCCccchHHHHHHHHHhcCCC
Q 021493 241 DLQEAIDALCTLPGVGPKVAACIALFSLDQH 271 (311)
Q Consensus 241 ~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~ 271 (311)
+.+++.+.|.+|||||+|+|.=++++-+.+.
T Consensus 20 ~l~~LI~~l~~LPGIG~KsA~RlA~hLL~~~ 50 (212)
T 3vdp_A 20 SVAKLIEELSKLPGIGPKTAQRLAFFIINMP 50 (212)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHcCC
Confidence 4688999999999999999999999988764
No 22
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=90.35 E-value=0.17 Score=44.78 Aligned_cols=31 Identities=39% Similarity=0.632 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCccchHHHHHHHHHhcCCCC
Q 021493 242 LQEAIDALCTLPGVGPKVAACIALFSLDQHH 272 (311)
Q Consensus 242 ~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~d 272 (311)
.+++++.|.+|||||+|+|.=++++-+.+.+
T Consensus 7 l~~LI~~l~~LPGIG~KSA~RlA~hLL~~~~ 37 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPKSAQRLAFHLFEQPR 37 (228)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHHSSSCH
T ss_pred HHHHHHHHhHCCCCCHHHHHHHHHHHHcCCH
Confidence 4789999999999999999999999887743
No 23
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=90.18 E-value=0.94 Score=42.34 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=37.6
Q ss_pred HHHHc-CCch-HHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHH
Q 021493 203 ELRNA-GFGY-RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 265 (311)
Q Consensus 203 ~Lr~~-Glg~-RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlL 265 (311)
+|..+ |+|. -|+-|.++.+ . |..-.++.|+.-........|++++|||||+|.-+--
T Consensus 58 ~l~~LpGIG~~~A~kI~E~l~---t---G~~~~le~l~~~~~~~~l~~l~~V~GiGpk~a~~l~~ 116 (335)
T 2fmp_A 58 EAKKLPGVGTKIAEKIDEFLA---T---GKLRKLEKIRQDDTSSSINFLTRVSGIGPSAARKFVD 116 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH---H---SSCHHHHHHHHCHHHHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHhcCCCCcHHHHHHHHHHHH---h---CCcHHHHHHHcccchhHHHHHhCCCCCCHHHHHHHHH
Confidence 35554 7775 4555554443 2 2223456665545478899999999999999997743
No 24
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=90.17 E-value=0.79 Score=43.30 Aligned_cols=52 Identities=21% Similarity=0.236 Sum_probs=35.9
Q ss_pred CCch-HHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHH
Q 021493 208 GFGY-RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 265 (311)
Q Consensus 208 Glg~-RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlL 265 (311)
|+|. -|+-|.++.+ . |..-.++.|+.-+.+.....|++++|||+|+|.-+--
T Consensus 68 GIG~~~A~kI~E~l~---t---G~~~~le~L~~d~~~~~l~~l~~I~GvG~kta~~l~~ 120 (360)
T 2ihm_A 68 YFGEHSTRVIQELLE---H---GTCEEVKQVRCSERYQTMKLFTQVFGVGVKTANRWYQ 120 (360)
T ss_dssp TCCHHHHHHHHHHHH---H---SCCHHHHHHHHSHHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---c---CChHHHHHHhcccchHHHHHHhCCCCCCHHHHHHHHH
Confidence 7775 4555554433 2 3223566666557788899999999999999997743
No 25
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=88.96 E-value=0.57 Score=33.26 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=22.1
Q ss_pred hhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHh
Q 021493 234 LLSLRKLDLQEAIDALCTLPGVGPKVAACIALFS 267 (311)
Q Consensus 234 l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~ 267 (311)
++.+...+ .++|..++|||+++|..+..+-
T Consensus 37 ~~~l~~a~----~~~L~~i~Gig~~~a~~i~~~~ 66 (75)
T 1x2i_A 37 VERVFTAS----VAELMKVEGIGEKIAKEIRRVI 66 (75)
T ss_dssp HHHHHHCC----HHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhCC----HHHHhcCCCCCHHHHHHHHHHH
Confidence 45554444 4579999999999999987643
No 26
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=88.53 E-value=0.52 Score=45.56 Aligned_cols=76 Identities=25% Similarity=0.260 Sum_probs=30.5
Q ss_pred cCCCHHHHhcCCHHHHHHcCCch-HHHHHHHHHHH------------HHHhcCC-----CccchhhhhCC---------C
Q 021493 189 EFPSLERLSLVSEVELRNAGFGY-RAKYITGTVDV------------LQSKHSG-----GAEWLLSLRKL---------D 241 (311)
Q Consensus 189 ~FPtpe~La~~~~e~Lr~~Glg~-RA~~I~~~A~~------------i~~~~~g-----g~~~l~~L~~~---------~ 241 (311)
.|-+..++..++.++||++||+- +...|+++-+. +.+.++. ..+..+.|-.. -
T Consensus 537 ~ygs~savr~~pv~elrelg~sd~~ia~ikgip~~~~~~~~~e~a~~l~er~~~~~~~~~~~~~~~l~~~g~~~~~~~ei 616 (685)
T 4gfj_A 537 KYGSASAVRRLPVEELRELGFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSLKEIGRRLSYDDLLELGATPKAAAEI 616 (685)
T ss_dssp HSSCHHHHHHSCHHHHHTTSCCHHHHHHHHTCCHHHHHHSCHHHHHHHHHHHSSSTGGGGSCGGGCCSSSCCGGGC----
T ss_pred hhccHHHHHhccHHHHHHcCCchhhHHHhcCCcHHHHhhcCHHHHHHHHHHhccHHHHhhcCCHHHHhccCCCHHHHHHh
Confidence 45689999999999999999984 66666654433 3333321 11122222110 0
Q ss_pred HHHHHHHhhcCCccchHHHHHHH
Q 021493 242 LQEAIDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 242 ~~e~~~~L~~l~GIG~ktAd~vl 264 (311)
-.-..+.|+.++||||+.|+-++
T Consensus 617 k~p~~k~ll~~~gv~p~la~r~~ 639 (685)
T 4gfj_A 617 KGPEFKFLLNIEGVGPKLAERIL 639 (685)
T ss_dssp -----------------------
T ss_pred cChhHHHhhcccCCCHHHHHHHH
Confidence 13367899999999999999775
No 27
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=87.83 E-value=1.1 Score=45.72 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=44.6
Q ss_pred CHHHHhcCCHHHHHHc-CCch-HHHHHHHHHH-------------------------HHHHhcCCCccchhhhhCCCHHH
Q 021493 192 SLERLSLVSEVELRNA-GFGY-RAKYITGTVD-------------------------VLQSKHSGGAEWLLSLRKLDLQE 244 (311)
Q Consensus 192 tpe~La~~~~e~Lr~~-Glg~-RA~~I~~~A~-------------------------~i~~~~~gg~~~l~~L~~~~~~e 244 (311)
++.+|..+..++|..+ |||. .|..|.+..+ .+.++++ +++.|.+.+
T Consensus 470 ~~aDL~~L~~~~L~~l~gfG~Ksa~nLl~aIe~sk~~~l~R~L~algi~~VG~~~Ak~La~~Fg----sl~~l~~As--- 542 (671)
T 2owo_A 470 TPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFG----TLEALEAAS--- 542 (671)
T ss_dssp SGGGGGTCCHHHHHTSTTCCHHHHHHHHHHHHHHTBCCHHHHHHHTTCTTCCHHHHHHHHHHHC----SHHHHHTCC---
T ss_pred CHHHHHhhCHHHhhcccccchhHHHHHHHHHHHHhcCChhheehhhcccCccHHHHHHHHHHcC----CHHHHHhCC---
Confidence 6777777777778775 7774 5666665422 2222221 345555444
Q ss_pred HHHHhhcCCccchHHHHHHHHHh
Q 021493 245 AIDALCTLPGVGPKVAACIALFS 267 (311)
Q Consensus 245 ~~~~L~~l~GIG~ktAd~vlLf~ 267 (311)
.++|.+++|||+++|..|.-|-
T Consensus 543 -~eeL~~i~GIG~~~A~sI~~ff 564 (671)
T 2owo_A 543 -IEELQKVPDVGIVVASHVHNFF 564 (671)
T ss_dssp -HHHHTTSTTCCHHHHHHHHHHH
T ss_pred -HHHHhhcCCCCHHHHHHHHHHH
Confidence 3589999999999999997653
No 28
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=87.42 E-value=0.77 Score=34.35 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=23.0
Q ss_pred hhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHh
Q 021493 234 LLSLRKLDLQEAIDALCTLPGVGPKVAACIALFS 267 (311)
Q Consensus 234 l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~ 267 (311)
++.+...+. ++|.+++|||+++|..+..+-
T Consensus 55 ~~~l~~as~----~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 55 LEQLIAASR----EDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp HHHHHSCCH----HHHHTSSSCCSHHHHHHHHHH
T ss_pred HHHHHhCCH----HHHHhCCCCCHHHHHHHHHHH
Confidence 555655554 578999999999999987654
No 29
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=87.20 E-value=0.2 Score=36.20 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=35.0
Q ss_pred CHHHHhcCCHHHHHHc-CCch-HHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHH
Q 021493 192 SLERLSLVSEVELRNA-GFGY-RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 192 tpe~La~~~~e~Lr~~-Glg~-RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vl 264 (311)
.+-++-.++.++|..+ |+|. +|+.|.+.- .+ ...++|.+++|||+++++-+.
T Consensus 17 ~~idiN~a~~~~L~~ipGIG~~~A~~Il~~r-----~~----------------~s~~eL~~v~Gig~k~~~~i~ 70 (75)
T 2duy_A 17 TPVSLNEASLEELMALPGIGPVLARRIVEGR-----PY----------------ARVEDLLKVKGIGPATLERLR 70 (75)
T ss_dssp CSEETTTCCHHHHTTSTTCCHHHHHHHHHTC-----CC----------------SSGGGGGGSTTCCHHHHHHHG
T ss_pred CccChhhCCHHHHHhCCCCCHHHHHHHHHHc-----cc----------------CCHHHHHhCCCCCHHHHHHHH
Confidence 3445666788888775 8885 665555421 11 124568899999999998774
No 30
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=86.88 E-value=0.84 Score=33.91 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=22.7
Q ss_pred hhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHh
Q 021493 234 LLSLRKLDLQEAIDALCTLPGVGPKVAACIALFS 267 (311)
Q Consensus 234 l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~ 267 (311)
++.+...+. ++|.+++|||+++|..+..+-
T Consensus 42 l~~l~~a~~----~eL~~i~GIG~~~a~~I~~~l 71 (89)
T 1z00_A 42 LEQLIAASR----EDLALCPGLGPQKARRLFDVL 71 (89)
T ss_dssp HHHHHHCCH----HHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCH----HHHHhCCCCCHHHHHHHHHHH
Confidence 555554443 578999999999999987654
No 31
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=86.44 E-value=0.77 Score=33.27 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=21.5
Q ss_pred hhhhhCCCHHHHHHHhhcCCccchHHHHHHHHH
Q 021493 234 LLSLRKLDLQEAIDALCTLPGVGPKVAACIALF 266 (311)
Q Consensus 234 l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf 266 (311)
++.+...+ .++|.+++|||+++|..+..+
T Consensus 47 l~~l~~a~----~eeL~~i~GIG~~~a~~I~~~ 75 (78)
T 1kft_A 47 LQGLRNAS----VEEIAKVPGISQGLAEKIFWS 75 (78)
T ss_dssp HHHHHHCC----HHHHTTSSSTTSHHHHHHHHH
T ss_pred HHHHHHCC----HHHHHHCCCCCHHHHHHHHHH
Confidence 45554444 457899999999999988654
No 32
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=85.98 E-value=0.29 Score=43.00 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=20.7
Q ss_pred HHHHhhcCCccchHHHHHHHHHhcCC
Q 021493 245 AIDALCTLPGVGPKVAACIALFSLDQ 270 (311)
Q Consensus 245 ~~~~L~~l~GIG~ktAd~vlLf~l~~ 270 (311)
..+.|+++||||+|+|+-|.+==-++
T Consensus 121 d~~~L~~vpGIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 121 NVAALTRVPGIGKRGAERMVLELRDK 146 (212)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred CHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 35789999999999999997644344
No 33
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=85.86 E-value=1.5 Score=33.23 Aligned_cols=58 Identities=22% Similarity=0.312 Sum_probs=37.9
Q ss_pred HHHHhcCCHHHHHHc-CCch-HHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHh
Q 021493 193 LERLSLVSEVELRNA-GFGY-RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFS 267 (311)
Q Consensus 193 pe~La~~~~e~Lr~~-Glg~-RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~ 267 (311)
+-.|..++.++|..+ |+|. +|+.|++.-+. . |. +. ..++|..++|||+++|+-+.-.+
T Consensus 31 ~i~iN~a~~~~L~~ipGIG~~~A~~Il~~r~~-~-----g~--f~---------s~edL~~v~Gig~k~~~~l~~~g 90 (98)
T 2edu_A 31 LDLLNEGSARDLRSLQRIGPKKAQLIVGWREL-H-----GP--FS---------QVEDLERVEGITGKQMESFLKAN 90 (98)
T ss_dssp HHHHHHSCHHHHHHSTTCCHHHHHHHHHHHHH-H-----CC--CS---------SGGGGGGSTTCCHHHHHHHHHHH
T ss_pred CeehhhCCHHHHHHCCCCCHHHHHHHHHHHHh-c-----CC--cC---------CHHHHHhCCCCCHHHHHHHHHCc
Confidence 345666677788775 8885 77777765321 1 11 11 12348999999999999886554
No 34
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=85.66 E-value=2.1 Score=40.73 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=35.3
Q ss_pred CCchH-HHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHH
Q 021493 208 GFGYR-AKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 265 (311)
Q Consensus 208 Glg~R-A~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlL 265 (311)
|+|.+ |+-|.++.+ . |..-.++.|+.-+.......|++++|||+|+|.-+--
T Consensus 87 GIG~~ia~kI~E~l~---t---G~~~~le~l~~d~~~~~l~~l~~I~GvGpk~a~~ly~ 139 (381)
T 1jms_A 87 CLGDKVKSIIEGIIE---D---GESSEAKAVLNDERYKSFKLFTSVFGVGLKTAEKWFR 139 (381)
T ss_dssp SCCHHHHHHHHHHHH---H---SSCHHHHHHHHCHHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH---c---CCcHHHHHHhcCcchhHHHHHHccCCCCHHHHHHHHH
Confidence 77753 444443332 3 2223566676657788899999999999999997743
No 35
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=85.23 E-value=2.7 Score=39.17 Aligned_cols=97 Identities=16% Similarity=0.144 Sum_probs=53.8
Q ss_pred HHHHc-CCch-HHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcCCCCcc---ccc
Q 021493 203 ELRNA-GFGY-RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAI---PVD 277 (311)
Q Consensus 203 ~Lr~~-Glg~-RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~f---PVD 277 (311)
+|..+ |+|. -|+-|.++.+ . |..-.++.|.. .++ +.+.|++++|||||+|.-+---|..-.+-+ .-.
T Consensus 58 ~l~~lpGIG~~~A~kI~E~l~---t---G~~~~le~l~~-~~p-~l~ll~~v~GiG~k~a~~l~~~Gi~tledL~~a~~~ 129 (335)
T 2bcq_A 58 EACSIPGIGKRMAEKIIEILE---S---GHLRKLDHISE-SVP-VLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASL 129 (335)
T ss_dssp HHHTSTTCCHHHHHHHHHHHH---S---SSCGGGGGCCT-THH-HHHHHHTSTTCCHHHHHHHHHTTCCSHHHHHHHCCC
T ss_pred HHhcCCCccHHHHHHHHHHHH---c---CCchHHHHHhh-hhH-HHHHHhcCCCcCHHHHHHHHHcCCCCHHHHHHHhcc
Confidence 35554 7775 4555554432 2 33334555543 344 777788999999999997643332221111 112
Q ss_pred hHHHHHHHHcCCCcccCCCCCHHHHHHHHHHh
Q 021493 278 THVWKIATRYLLPELAGVRLTPKLCSRVAEAF 309 (311)
Q Consensus 278 t~v~Ri~~r~~~~~~~~~~~t~k~y~~i~~~~ 309 (311)
+...++.-++|- ....++...+..++++..
T Consensus 130 k~~q~Igl~~~~--~~~~ripr~ea~~ia~~i 159 (335)
T 2bcq_A 130 TTQQAIGLKHYS--DFLERMPREEATEIEQTV 159 (335)
T ss_dssp CHHHHHHHHTTT--GGGCCEEHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH--HhcCCEEHHHHHHHHHHH
Confidence 455666555552 223566667777766544
No 36
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=85.13 E-value=1.4 Score=45.05 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=43.5
Q ss_pred CHHHHhcCCHHHHHHc-CCch-HHHHHHHH-------------------------HHHHHHhcCCCccchhhhhCCCHHH
Q 021493 192 SLERLSLVSEVELRNA-GFGY-RAKYITGT-------------------------VDVLQSKHSGGAEWLLSLRKLDLQE 244 (311)
Q Consensus 192 tpe~La~~~~e~Lr~~-Glg~-RA~~I~~~-------------------------A~~i~~~~~gg~~~l~~L~~~~~~e 244 (311)
++.+|..+..++|..+ |||. +|..|.+. |+.+.++++ +++.|.+.+
T Consensus 465 ~~~DL~~L~~e~L~~l~g~G~Ksa~nLl~aIe~sk~~~l~R~L~alGI~~VG~~~Ak~La~~Fg----sl~~l~~As--- 537 (667)
T 1dgs_A 465 DVADLYHLRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGEVLARNLARRFG----TMDRLLEAS--- 537 (667)
T ss_dssp SGGGGGGGCCHHHHTTSSCCSTTHHHHHHHHHHGGGCCHHHHHHHTTCSSCCHHHHHHHHHTTS----BHHHHTTCC---
T ss_pred CHHHHHhcCHHHHhcccccchhhHHHHHHHHHHHhcCcHHHhhHhhccCCccHHHHHHHHHHcC----CHHHHHhCC---
Confidence 6667777776777665 7763 56665544 222333221 355555544
Q ss_pred HHHHhhcCCccchHHHHHHHHHh
Q 021493 245 AIDALCTLPGVGPKVAACIALFS 267 (311)
Q Consensus 245 ~~~~L~~l~GIG~ktAd~vlLf~ 267 (311)
.++|.+++|||+++|+.|.-|-
T Consensus 538 -~eeL~~I~GIG~~~A~sI~~ff 559 (667)
T 1dgs_A 538 -LEELIEVEEVGELTARAILETL 559 (667)
T ss_dssp -HHHHHTSTTCCHHHHHHHHHHH
T ss_pred -HHHHHhccCcCHHHHHHHHHHH
Confidence 3578899999999999997653
No 37
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=84.68 E-value=0.52 Score=36.27 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=37.3
Q ss_pred CHHHHhcCCHHHHHHc-CCch-HHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHH
Q 021493 192 SLERLSLVSEVELRNA-GFGY-RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 265 (311)
Q Consensus 192 tpe~La~~~~e~Lr~~-Glg~-RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlL 265 (311)
.+-.|-.++.++|..+ |+|. +|+.|++ . |+ +. .+++|++++|||+++.+-+.-
T Consensus 16 ~~vdiNtAs~~eL~~lpGIG~~~A~~IV~------~---Gp---F~---------s~edL~~V~Gig~~~~e~l~~ 70 (97)
T 3arc_U 16 EKIDLNNTNIAAFIQYRGLYPTLAKLIVK------N---AP---YE---------SVEDVLNIPGLTERQKQILRE 70 (97)
T ss_dssp TSEETTTSCGGGGGGSTTCTTHHHHHHHH------H---CC---CS---------SGGGGGGCTTCCHHHHHHHHH
T ss_pred CceeCCcCCHHHHhHCCCCCHHHHHHHHH------c---CC---CC---------CHHHHHhccCCCHHHHHHHHH
Confidence 3445666788888775 8885 8888776 1 21 11 256789999999999887754
No 38
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=84.62 E-value=0.51 Score=33.99 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=18.2
Q ss_pred HHHhhcCCccchHHHHHHHHH
Q 021493 246 IDALCTLPGVGPKVAACIALF 266 (311)
Q Consensus 246 ~~~L~~l~GIG~ktAd~vlLf 266 (311)
.+.|.++||||+++|..|+-.
T Consensus 26 ~~~L~~ipGIG~~~A~~Il~~ 46 (75)
T 2duy_A 26 LEELMALPGIGPVLARRIVEG 46 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHH
Confidence 557899999999999998763
No 39
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=82.75 E-value=0.7 Score=40.55 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.1
Q ss_pred CHHHHHHHhhcCCccchHHHHHHHH
Q 021493 241 DLQEAIDALCTLPGVGPKVAACIAL 265 (311)
Q Consensus 241 ~~~e~~~~L~~l~GIG~ktAd~vlL 265 (311)
+..+....|.+++|||||+|..|+-
T Consensus 82 ~Er~lf~~L~sv~GIGpk~A~~Ils 106 (212)
T 2ztd_A 82 ETRDLFLTLLSVSGVGPRLAMAALA 106 (212)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCcCCcCHHHHHHHHH
Confidence 3456788899999999999999974
No 40
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=82.21 E-value=0.91 Score=33.91 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=22.8
Q ss_pred HHHHHHHhhcCCccchHHHHHHHHHhcCC
Q 021493 242 LQEAIDALCTLPGVGPKVAACIALFSLDQ 270 (311)
Q Consensus 242 ~~e~~~~L~~l~GIG~ktAd~vlLf~l~~ 270 (311)
-..+...|..|||||+|.+..+|- .++-
T Consensus 13 N~~~~s~L~~IpGIG~kr~~~LL~-~FgS 40 (84)
T 1z00_B 13 NPGPQDFLLKMPGVNAKNCRSLMH-HVKN 40 (84)
T ss_dssp CHHHHHHHHTCSSCCHHHHHHHHH-HSSC
T ss_pred cccHHHHHHhCCCCCHHHHHHHHH-HcCC
Confidence 367889999999999999998865 4444
No 41
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=81.40 E-value=3.2 Score=41.45 Aligned_cols=65 Identities=23% Similarity=0.341 Sum_probs=36.2
Q ss_pred HHHHhcCCHHHHHHc-CCchH-HHHHHHHHHHHHHhcCCCccc-hhhhhCCCHHHHHHHhhcCCccchHHHHHHHH
Q 021493 193 LERLSLVSEVELRNA-GFGYR-AKYITGTVDVLQSKHSGGAEW-LLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 265 (311)
Q Consensus 193 pe~La~~~~e~Lr~~-Glg~R-A~~I~~~A~~i~~~~~gg~~~-l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlL 265 (311)
.+.+.+..++.+..+ |+|.+ +.+|..+. .+ |.+. +..+.. ...+....|++++|||||+|-.++-
T Consensus 44 i~~~~~~~~~~~~~lp~iG~~~~~~i~~~v---~~----g~~~l~~~~~~-~~~~~~~~l~~v~GvGpk~A~~~~~ 111 (575)
T 3b0x_A 44 IEEIAEKGKEALMELPGVGPDLAEKILEFL---RT----GKVRKHEELSR-KVPRGVLEVMEVPGVGPKTARLLYE 111 (575)
T ss_dssp HHHHHTTCHHHHHTSTTCCHHHHHHHHHHH---HH----SSCHHHHHHHH-HSCHHHHHHHTSTTTCHHHHHHHHH
T ss_pred hhhHhhcchhHHHhCCCCCHHHHHHHHHHH---Hc----CcHHHHhhhhh-hhHHHHHHHhcCCCcCHHHHHHHHH
Confidence 445544443336665 66653 44444333 23 3222 233332 2245788899999999999988754
No 42
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=79.99 E-value=1 Score=38.82 Aligned_cols=19 Identities=42% Similarity=0.525 Sum_probs=12.5
Q ss_pred HhhcCCccchHHHHHHHHH
Q 021493 248 ALCTLPGVGPKVAACIALF 266 (311)
Q Consensus 248 ~L~~l~GIG~ktAd~vlLf 266 (311)
+|.++||||+|+|+-|.+.
T Consensus 108 ~L~~vpGIG~K~A~rI~~~ 126 (191)
T 1ixr_A 108 LLTSASGVGRRLAERIALE 126 (191)
T ss_dssp HHTTSTTCCHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHH
Confidence 4567777777777766543
No 43
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=79.31 E-value=2.7 Score=30.47 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=34.0
Q ss_pred HHcCCchHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHH
Q 021493 205 RNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 205 r~~Glg~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vl 264 (311)
..++++.||.....-| |.-.+..|-..+ .++|++++|+|+|+.+-|.
T Consensus 12 e~L~LS~Ra~NcLkra---------gI~Tv~dL~~~s----~~dLlki~n~G~kSl~EI~ 58 (73)
T 1z3e_B 12 EELDLSVRSYNCLKRA---------GINTVQELANKT----EEDMMKVRNLGRKSLEEVK 58 (73)
T ss_dssp GGSCCBHHHHHHHHHT---------TCCBHHHHHTSC----HHHHHTSTTCCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHc---------CCCcHHHHHcCC----HHHHHHcCCCCHHHHHHHH
Confidence 3478888875543322 555777777776 4579999999999988764
No 44
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=79.09 E-value=1 Score=31.54 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=19.9
Q ss_pred HHHhhcCCccchHHHHHHHHHhcCCCC
Q 021493 246 IDALCTLPGVGPKVAACIALFSLDQHH 272 (311)
Q Consensus 246 ~~~L~~l~GIG~ktAd~vlLf~l~~~d 272 (311)
...|..|||||++.+..+|- .+|...
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~-~Fgs~~ 28 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMH-HVKNIA 28 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHH-HCSSHH
T ss_pred HhHHHcCCCCCHHHHHHHHH-HcCCHH
Confidence 46789999999999998864 455433
No 45
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=78.99 E-value=0.8 Score=39.49 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=6.8
Q ss_pred CCch-HHHHHHHH
Q 021493 208 GFGY-RAKYITGT 219 (311)
Q Consensus 208 Glg~-RA~~I~~~ 219 (311)
|+|. +|..|.+.
T Consensus 79 GIGpk~A~~iL~~ 91 (191)
T 1ixr_A 79 GVGPKVALALLSA 91 (191)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHh
Confidence 6664 56655543
No 46
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=78.30 E-value=0.86 Score=39.66 Aligned_cols=21 Identities=38% Similarity=0.640 Sum_probs=18.6
Q ss_pred HHHhhcCCccchHHHHHHHHH
Q 021493 246 IDALCTLPGVGPKVAACIALF 266 (311)
Q Consensus 246 ~~~L~~l~GIG~ktAd~vlLf 266 (311)
.++|+++||||+|+|+-|.+.
T Consensus 107 ~~~L~~vpGIG~K~A~rI~~e 127 (203)
T 1cuk_A 107 VGALVKLPGIGKKTAERLIVE 127 (203)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHhhCCCCCHHHHHHHHHH
Confidence 568999999999999999763
No 47
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=77.72 E-value=1 Score=36.60 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=34.5
Q ss_pred HHhcCCHHHHHHc-CCch-HHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHH
Q 021493 195 RLSLVSEVELRNA-GFGY-RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 195 ~La~~~~e~Lr~~-Glg~-RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vl 264 (311)
.|-.++.++|..+ |+|. +|+.|+ + + | . +. ..++|++++|||+|+.+.+-
T Consensus 56 niNtA~~~eL~~LpGiGp~~A~~II-------~-~-G-p--F~---------svedL~~V~GIg~k~~e~l~ 106 (134)
T 1s5l_U 56 DLNNTNIAAFIQYRGLYPTLAKLIV-------K-N-A-P--YE---------SVEDVLNIPGLTERQKQILR 106 (134)
T ss_dssp ETTTSCGGGGGGSTTCTHHHHHHHH-------H-T-C-C--CS---------SGGGGGGCTTCCHHHHHHHH
T ss_pred eCcccCHHHHHHCCCCCHHHHHHHH-------H-c-C-C--CC---------CHHHHHhCCCCCHHHHHHHH
Confidence 4556778888886 9985 888777 2 1 2 1 11 35689999999999877653
No 48
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=77.56 E-value=3.2 Score=30.65 Aligned_cols=47 Identities=11% Similarity=0.123 Sum_probs=34.9
Q ss_pred HHcCCchHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHH
Q 021493 205 RNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 205 r~~Glg~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vl 264 (311)
..++++.||.....-| |.-++..|-.++. ++|++++|+|+|+.+-|.
T Consensus 19 e~L~LS~Ra~NcLk~a---------gI~Tv~dL~~~se----~dLlki~n~G~kSl~EI~ 65 (79)
T 3gfk_B 19 EELDLSVRSYNCLKRA---------GINTVQELANKTE----EDMMKVRNLGRKSLEEVK 65 (79)
T ss_dssp GGSCCBHHHHHHHHHT---------TCCBHHHHTTCCH----HHHTTSTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHh---------CCCCHHHHHhCCH----HHHHHcCCCCHhHHHHHH
Confidence 3478988876554433 5557777777764 479999999999998875
No 49
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=76.69 E-value=3.6 Score=39.08 Aligned_cols=40 Identities=28% Similarity=0.526 Sum_probs=34.3
Q ss_pred cccCCCHHHHhcCCHHHHHHc-CCc-hHHHHHHHHHHHHHHh
Q 021493 187 FHEFPSLERLSLVSEVELRNA-GFG-YRAKYITGTVDVLQSK 226 (311)
Q Consensus 187 ~~~FPtpe~La~~~~e~Lr~~-Glg-~RA~~I~~~A~~i~~~ 226 (311)
...|-+.+.+.+++.+||.+. |+| .||+.|++....+..+
T Consensus 332 v~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~IregL~r~~~~ 373 (377)
T 3c1y_A 332 VRMFKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHR 373 (377)
T ss_dssp HHHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHhCCHHHHHhccCccHHHHHHHHHHHHHHhcc
Confidence 456779999999999999886 899 5999999998888753
No 50
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=76.05 E-value=1.4 Score=38.29 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=20.6
Q ss_pred CHHHHHHHhhcCCccchHHHHHHHH
Q 021493 241 DLQEAIDALCTLPGVGPKVAACIAL 265 (311)
Q Consensus 241 ~~~e~~~~L~~l~GIG~ktAd~vlL 265 (311)
...+....|.+++|||||+|..++-
T Consensus 67 ~ek~~f~~L~~V~GIGpk~A~~iL~ 91 (203)
T 1cuk_A 67 QERTLFKELIKTNGVGPKLALAILS 91 (203)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHh
Confidence 3455667899999999999999875
No 51
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=75.73 E-value=17 Score=30.96 Aligned_cols=130 Identities=13% Similarity=0.130 Sum_probs=83.6
Q ss_pred HhccChhHHHHHHHhcCCccCC-CCHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCCCccccccccccCCCHHHHhcCC
Q 021493 123 FSASDCRFAELAKYLAGARVLR-QDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLERLSLVS 200 (311)
Q Consensus 123 l~~~D~~l~~~~~~~~GlR~l~-~dpfe~Li~~IlsQq~~i~~a~~~~~~L~-~~G~~~~~~~~~~~~~FPtpe~La~~~ 200 (311)
|...||.+..-...-=|..+-. +-.||.|+-.+...-.|+..|.+-.+.+. .| ..| +|+.+|..+
T Consensus 6 W~~~~ply~~YHD~EWG~P~~Dd~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF------------~~F-d~~~VA~~~ 72 (183)
T 2ofk_A 6 WVSQDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACF------------HQF-DPIRIAAMQ 72 (183)
T ss_dssp TCCSCHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHT------------GGG-CHHHHHTCC
T ss_pred CCCCChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHH------------cCC-CHHHHcCCC
Confidence 3334555444444444776654 77899999999999999999988888776 33 333 899999999
Q ss_pred HHHHHHc----CC-c--hHHHHHHHHHHHHHHhc-CCCcc--chhhh-------------hCC---C--HHHHHHHhhc-
Q 021493 201 EVELRNA----GF-G--YRAKYITGTVDVLQSKH-SGGAE--WLLSL-------------RKL---D--LQEAIDALCT- 251 (311)
Q Consensus 201 ~e~Lr~~----Gl-g--~RA~~I~~~A~~i~~~~-~gg~~--~l~~L-------------~~~---~--~~e~~~~L~~- 251 (311)
++++..+ |+ . .|.+.++.-|+++.+-. .+|.+ .+-.. .+. + .+.+-+.|.+
T Consensus 73 e~~ve~Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e~Gsf~~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~~lsk~LKkr 152 (183)
T 2ofk_A 73 EEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKR 152 (183)
T ss_dssp HHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTTTSCEECCCSSGGGSCSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhcCCCCCccCCccchhhccCCCHHHHHHHHHHHhC
Confidence 9998663 55 2 27778888888876421 11221 11111 011 1 1235556664
Q ss_pred -CCccchHHHHHHHH
Q 021493 252 -LPGVGPKVAACIAL 265 (311)
Q Consensus 252 -l~GIG~ktAd~vlL 265 (311)
++=|||-|+-.+|.
T Consensus 153 GfkFvGpT~~yafmQ 167 (183)
T 2ofk_A 153 GFKFVGTTICYSFMQ 167 (183)
T ss_dssp TCCSCCHHHHHHHHH
T ss_pred CCeecChHHHHHHHH
Confidence 88899998866654
No 52
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=74.84 E-value=2 Score=31.79 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=18.9
Q ss_pred HHHHHHhhcCCccchHHHHHHHH
Q 021493 243 QEAIDALCTLPGVGPKVAACIAL 265 (311)
Q Consensus 243 ~e~~~~L~~l~GIG~ktAd~vlL 265 (311)
......|..+||||+++|.-++-
T Consensus 15 ~~~~~~L~~IpgIG~~~A~~Ll~ 37 (89)
T 1z00_A 15 SRVTECLTTVKSVNKTDSQTLLT 37 (89)
T ss_dssp HHHHHHHTTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHH
Confidence 34567888999999999998865
No 53
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=74.68 E-value=1.6 Score=35.45 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=17.5
Q ss_pred HHHhhcCCccchHHHHHHH
Q 021493 246 IDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 246 ~~~L~~l~GIG~ktAd~vl 264 (311)
.++|+++|||||+.|.-|.
T Consensus 62 ~~eL~~LpGiGp~~A~~II 80 (134)
T 1s5l_U 62 IAAFIQYRGLYPTLAKLIV 80 (134)
T ss_dssp GGGGGGSTTCTHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHH
Confidence 5678999999999999998
No 54
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=73.86 E-value=1.2 Score=34.25 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=18.1
Q ss_pred HHHhhcCCccchHHHHHHHH
Q 021493 246 IDALCTLPGVGPKVAACIAL 265 (311)
Q Consensus 246 ~~~L~~l~GIG~ktAd~vlL 265 (311)
.++|+.+||||++.|.-|.-
T Consensus 25 ~~eL~~lpGIG~~~A~~IV~ 44 (97)
T 3arc_U 25 IAAFIQYRGLYPTLAKLIVK 44 (97)
T ss_dssp GGGGGGSTTCTTHHHHHHHH
T ss_pred HHHHhHCCCCCHHHHHHHHH
Confidence 45899999999999999987
No 55
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=73.71 E-value=20 Score=30.60 Aligned_cols=134 Identities=10% Similarity=0.068 Sum_probs=86.3
Q ss_pred HhccChhHHHHHHHhcCCccCC-CCHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCCCccccccccccCCCHHHHhcCC
Q 021493 123 FSASDCRFAELAKYLAGARVLR-QDPVECLLQFLCSSNNNIARITKMVDFLA-SLGSHLGNVEGFEFHEFPSLERLSLVS 200 (311)
Q Consensus 123 l~~~D~~l~~~~~~~~GlR~l~-~dpfe~Li~~IlsQq~~i~~a~~~~~~L~-~~G~~~~~~~~~~~~~FPtpe~La~~~ 200 (311)
|...||.+..-...-=|..+-. +-.||.|+-.+...-.|+..|.+-.+.+. .| ..| +|+.+|..+
T Consensus 6 W~~~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF------------~~F-D~~~VA~~~ 72 (186)
T 2jg6_A 6 FGTKDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAF------------YDF-EPEKVAQMT 72 (186)
T ss_dssp TTCCCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHT------------GGG-CHHHHTTCC
T ss_pred CCCCChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHH------------cCC-CHHHHhCCC
Confidence 3445555444444444777654 77899999999999999999998888776 33 233 899999999
Q ss_pred HHHHHHc----CCc-h--HHHHHHHHHHHHHH---hcCCCccchhhh-------------hCCC-----HHHHHHHhhc-
Q 021493 201 EVELRNA----GFG-Y--RAKYITGTVDVLQS---KHSGGAEWLLSL-------------RKLD-----LQEAIDALCT- 251 (311)
Q Consensus 201 ~e~Lr~~----Glg-~--RA~~I~~~A~~i~~---~~~gg~~~l~~L-------------~~~~-----~~e~~~~L~~- 251 (311)
++++..+ |+= . |.+.++.-|+++.+ ++++=.-++-.. .+.+ .+.+-+.|.+
T Consensus 73 e~dve~Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkr 152 (186)
T 2jg6_A 73 AQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQY 152 (186)
T ss_dssp HHHHHHHTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHC
Confidence 9988663 552 2 77778888887764 222100011111 1111 1245556775
Q ss_pred -CCccchHHHHHHHHHhcCC
Q 021493 252 -LPGVGPKVAACIALFSLDQ 270 (311)
Q Consensus 252 -l~GIG~ktAd~vlLf~l~~ 270 (311)
++=|||-|+-.+|. +.|-
T Consensus 153 GFkFvGpt~~YafmQ-A~G~ 171 (186)
T 2jg6_A 153 GFKFLGPVTVFSFLE-AAGL 171 (186)
T ss_dssp TCCSCCHHHHHHHHH-HTTS
T ss_pred CCeeechHHHHHHHH-Hhcc
Confidence 99999999988865 4443
No 56
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=73.57 E-value=3.7 Score=35.47 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=22.3
Q ss_pred hhhhhCCCHHHHHHHhhcCCccchHHHHHHHHH
Q 021493 234 LLSLRKLDLQEAIDALCTLPGVGPKVAACIALF 266 (311)
Q Consensus 234 l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf 266 (311)
++.+.+.+. ++|..++|||+++|..+.-|
T Consensus 185 ~~~l~~a~~----e~L~~v~GiG~~~a~~i~~~ 213 (219)
T 2bgw_A 185 LERFFTASK----AEISKVEGIGEKRAEEIKKI 213 (219)
T ss_dssp HHHHTTCCH----HHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHhCCH----HHHhhCCCCCHHHHHHHHHH
Confidence 556655554 46899999999999998754
No 57
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=72.77 E-value=3.8 Score=39.67 Aligned_cols=69 Identities=17% Similarity=0.345 Sum_probs=46.6
Q ss_pred cccCCCHHHHhcCCHHHHHHcCCc-hHHHHHHHHHHH------------HHHhcCCCccchhhhhCCCHHHHHH------
Q 021493 187 FHEFPSLERLSLVSEVELRNAGFG-YRAKYITGTVDV------------LQSKHSGGAEWLLSLRKLDLQEAID------ 247 (311)
Q Consensus 187 ~~~FPtpe~La~~~~e~Lr~~Glg-~RA~~I~~~A~~------------i~~~~~gg~~~l~~L~~~~~~e~~~------ 247 (311)
+-.|.|.+.++.+++++|+.-|+| .+|+.|+++-.. +..+++ +....+.++.++.++
T Consensus 485 LEkFGSVe~Vm~AteDELRedGIGekqarrI~gl~~l~~~~~d~~~a~elkr~yg----s~savr~~pv~elrelg~sd~ 560 (685)
T 4gfj_A 485 LKKYGGYSKVREAGVEELREDGLTDAQIRELKGLKTLESIVGDLEKADELKRKYG----SASAVRRLPVEELRELGFSDD 560 (685)
T ss_dssp HHHHTSHHHHHHSCHHHHHHTTCCHHHHHHHHTCHHHHHHSSSHHHHHHHHHHSS----CHHHHHHSCHHHHHTTSCCHH
T ss_pred HHHhcCHHHHHhCCHHHHHHccccHHHHHHHhhHHHHHHHhcchhhHHHHHHhhc----cHHHHHhccHHHHHHcCCchh
Confidence 456889999999999999999999 488888875432 223332 234445566666553
Q ss_pred HhhcCCccchHH
Q 021493 248 ALCTLPGVGPKV 259 (311)
Q Consensus 248 ~L~~l~GIG~kt 259 (311)
++..|+||-.+.
T Consensus 561 ~ia~ikgip~~~ 572 (685)
T 4gfj_A 561 EIAEIKGIPKKL 572 (685)
T ss_dssp HHHHHHTCCHHH
T ss_pred hHHHhcCCcHHH
Confidence 455667776554
No 58
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=72.62 E-value=9.4 Score=27.21 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=29.3
Q ss_pred CCCHHHHhcCCHHHHHH-cCCch-HHHHHHHHHHH
Q 021493 190 FPSLERLSLVSEVELRN-AGFGY-RAKYITGTVDV 222 (311)
Q Consensus 190 FPtpe~La~~~~e~Lr~-~Glg~-RA~~I~~~A~~ 222 (311)
|-|.+.|+.++.++|.. .|++. ||..|+..|+.
T Consensus 28 i~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 28 VCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp CCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 45999999999999987 68984 99999999987
No 59
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=72.29 E-value=1.8 Score=32.82 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=18.2
Q ss_pred HHHhhcCCccchHHHHHHHHH
Q 021493 246 IDALCTLPGVGPKVAACIALF 266 (311)
Q Consensus 246 ~~~L~~l~GIG~ktAd~vlLf 266 (311)
.+.|.++||||+++|..|+-.
T Consensus 39 ~~~L~~ipGIG~~~A~~Il~~ 59 (98)
T 2edu_A 39 ARDLRSLQRIGPKKAQLIVGW 59 (98)
T ss_dssp HHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHH
Confidence 457899999999999999865
No 60
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=72.26 E-value=2.6 Score=29.61 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=19.0
Q ss_pred HHHHHHhhcCCccchHHHHHHHH
Q 021493 243 QEAIDALCTLPGVGPKVAACIAL 265 (311)
Q Consensus 243 ~e~~~~L~~l~GIG~ktAd~vlL 265 (311)
+.....|..+||||+++|.-++-
T Consensus 10 ~~~~~~L~~i~giG~~~a~~Ll~ 32 (75)
T 1x2i_A 10 ERQRLIVEGLPHVSATLARRLLK 32 (75)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHH
Confidence 44567899999999999988765
No 61
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=72.06 E-value=4.6 Score=38.02 Aligned_cols=52 Identities=21% Similarity=0.111 Sum_probs=35.6
Q ss_pred cCCchHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHH-hcCCC
Q 021493 207 AGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALF-SLDQH 271 (311)
Q Consensus 207 ~Glg~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf-~l~~~ 271 (311)
-|-.+|++.-.++|..|..-. ..+..+ ++|.+|||||+++|+.|.=+ .-|..
T Consensus 34 ~g~~~r~~AYr~Aa~~l~~l~----~~i~~~---------~~l~~lpGIG~~~A~kI~E~l~tG~~ 86 (360)
T 2ihm_A 34 EANEGRLLSFSRAASVLKSLP----CPVASL---------SQLHGLPYFGEHSTRVIQELLEHGTC 86 (360)
T ss_dssp TTCHHHHHHHHHHHHHHHHCS----SCCCSG---------GGGTTCTTCCHHHHHHHHHHHHHSCC
T ss_pred cCCcHHHHHHHHHHHHHHhCC----cccCCH---------HHHhcCCCCCHHHHHHHHHHHHcCCh
Confidence 353479998999999888621 122221 13999999999999998744 34443
No 62
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=71.90 E-value=2.4 Score=39.50 Aligned_cols=46 Identities=28% Similarity=0.462 Sum_probs=33.2
Q ss_pred CCchHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHH
Q 021493 208 GFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALF 266 (311)
Q Consensus 208 Glg~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf 266 (311)
|-.+|++.-.++|..|..-. ..+.. .++|.+|||||+++|+.|.=+
T Consensus 31 g~~~r~~AYr~Aa~~l~~l~----~~i~~---------~~~l~~lpGIG~~~A~kI~E~ 76 (335)
T 2bcq_A 31 GDKWRALGYAKAINALKSFH----KPVTS---------YQEACSIPGIGKRMAEKIIEI 76 (335)
T ss_dssp TCHHHHHHHHHHHHHHHSCC----SCCCC---------HHHHHTSTTCCHHHHHHHHHH
T ss_pred CccHhHHHHHHHHHHHHhCC----ccccC---------HHHHhcCCCccHHHHHHHHHH
Confidence 44489988999999887521 11221 224999999999999999754
No 63
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=71.59 E-value=2.7 Score=31.31 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=19.9
Q ss_pred HHHHHHhhcCCccchHHHHHHHHHhcC
Q 021493 243 QEAIDALCTLPGVGPKVAACIALFSLD 269 (311)
Q Consensus 243 ~e~~~~L~~l~GIG~ktAd~vlLf~l~ 269 (311)
......|..+||||+++|.-++- .++
T Consensus 28 ~~~~~~L~~IpgIG~~~A~~Ll~-~fg 53 (91)
T 2a1j_B 28 SRVTECLTTVKSVNKTDSQTLLT-TFG 53 (91)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHH-HHS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHH-HCC
Confidence 34566888999999999997764 344
No 64
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=71.16 E-value=3 Score=38.92 Aligned_cols=44 Identities=25% Similarity=0.207 Sum_probs=32.4
Q ss_pred chHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHH
Q 021493 210 GYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALF 266 (311)
Q Consensus 210 g~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf 266 (311)
.+|++.-.++|..|..-.. .+.. .++|.+|||||+++|+.|.=+
T Consensus 33 ~~rv~AYr~Aa~~l~~l~~----~i~~---------~~~l~~LpGIG~~~A~kI~E~ 76 (335)
T 2fmp_A 33 IHKYNAYRKAASVIAKYPH----KIKS---------GAEAKKLPGVGTKIAEKIDEF 76 (335)
T ss_dssp HHHHHHHHHHHHHHHHCSS----CCCC---------HHHHHTSTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCc----cccC---------HHHHhcCCCCcHHHHHHHHHH
Confidence 3799999999998876221 1221 224899999999999998744
No 65
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=71.01 E-value=1.3 Score=38.55 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=19.3
Q ss_pred HHHHhhcCCccchHHHHHHHHHh
Q 021493 245 AIDALCTLPGVGPKVAACIALFS 267 (311)
Q Consensus 245 ~~~~L~~l~GIG~ktAd~vlLf~ 267 (311)
..++|..|||||++.|..|+-+=
T Consensus 130 ~~~eL~~LpGIG~k~A~~IIeyR 152 (205)
T 2i5h_A 130 RMHQLELLPGVGKKMMWAIIEER 152 (205)
T ss_dssp SSBGGGGSTTCCHHHHHHHHHHH
T ss_pred CHHHHhcCCCcCHHHHHHHHHHH
Confidence 34588999999999999998653
No 66
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=70.75 E-value=4.8 Score=30.18 Aligned_cols=46 Identities=13% Similarity=0.085 Sum_probs=33.3
Q ss_pred HcCCchHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHH
Q 021493 206 NAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 206 ~~Glg~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vl 264 (311)
.++++.||.....-| |.-++..|-.++. ++|++++|+|+|+.+-|.
T Consensus 16 ~L~LSvRa~NcLkra---------gI~Tv~dL~~~se----~dLlki~n~G~KSl~EI~ 61 (86)
T 3k4g_A 16 DLELTVRSANCLXAE---------AIHYIGDLVQRTE----VELLXTPNLGXXSLTEIX 61 (86)
T ss_dssp GGCCCHHHHHHHHHT---------TCCBHHHHHHSCH----HHHHTSTTCCHHHHHHHH
T ss_pred HhCCCHHHHHHHHHc---------CCCcHHHHHhCCH----HHHhhccccCcccHHHHH
Confidence 478888876544322 4556666666653 479999999999999886
No 67
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=69.56 E-value=5.2 Score=37.99 Aligned_cols=51 Identities=18% Similarity=0.051 Sum_probs=35.2
Q ss_pred cCCchHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHH-hcCC
Q 021493 207 AGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALF-SLDQ 270 (311)
Q Consensus 207 ~Glg~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf-~l~~ 270 (311)
.|-.+|++.-.++|..|..-. ..+..+ ++|.+|||||+++|+.|-=+ .-|+
T Consensus 53 ~g~~~rv~AYr~Aa~~l~~l~----~~i~~~---------~~l~~lpGIG~~ia~kI~E~l~tG~ 104 (381)
T 1jms_A 53 RENEGSCLAFMRASSVLKSLP----FPITSM---------KDTEGIPCLGDKVKSIIEGIIEDGE 104 (381)
T ss_dssp TTCHHHHHHHHHHHHHHHTCS----SCCCSG---------GGGTTCSSCCHHHHHHHHHHHHHSS
T ss_pred hCCcHHHHHHHHHHHHHHhCC----ccccCH---------HHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 453479999999999887521 123221 13999999999999999744 3344
No 68
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=67.34 E-value=2.7 Score=31.50 Aligned_cols=41 Identities=12% Similarity=-0.015 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHH
Q 021493 211 YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 211 ~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vl 264 (311)
.++.....+++.+..-+ +.+. --+++..|+|||+++|+.+-
T Consensus 35 k~~~~Y~KA~~sLk~~P----~~i~---------s~~e~~~L~giG~ki~~~L~ 75 (87)
T 2kp7_A 35 HTRFVFQKALRSLQRYP----LPLR---------SGKEAKILQHFGDRLCRMLD 75 (87)
T ss_dssp TTHHHHHHHHHHHHHCC----SCCC---------SHHHHHTCTTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC----CCCC---------CHHHHHHhhcccHHHHHHHH
Confidence 45666666677766521 1111 13466899999999998763
No 69
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=65.87 E-value=3.2 Score=41.53 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.5
Q ss_pred HHHHHHhhcCCccchHHHHHHHH
Q 021493 243 QEAIDALCTLPGVGPKVAACIAL 265 (311)
Q Consensus 243 ~e~~~~L~~l~GIG~ktAd~vlL 265 (311)
.+....|++++|||||+|..++-
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~ 115 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWL 115 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHH
Confidence 44778899999999999998875
No 70
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=65.67 E-value=2.3 Score=30.68 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=17.5
Q ss_pred HHHHhhcCCccchHHHHHHHHH
Q 021493 245 AIDALCTLPGVGPKVAACIALF 266 (311)
Q Consensus 245 ~~~~L~~l~GIG~ktAd~vlLf 266 (311)
....|..+||||+++|.-++-.
T Consensus 22 ~~~~L~~I~gIG~~~A~~Ll~~ 43 (78)
T 1kft_A 22 NTSSLETIEGVGPKRRQMLLKY 43 (78)
T ss_dssp -CCGGGGCTTCSSSHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHH
Confidence 4557889999999999988653
No 71
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=59.61 E-value=7.1 Score=33.61 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=18.4
Q ss_pred HHHHHhhcCCccchHHHHHHHHH
Q 021493 244 EAIDALCTLPGVGPKVAACIALF 266 (311)
Q Consensus 244 e~~~~L~~l~GIG~ktAd~vlLf 266 (311)
.....|..+||||+++|..++-.
T Consensus 159 ~~~~~L~~i~gVg~~~a~~Ll~~ 181 (219)
T 2bgw_A 159 WQLYILQSFPGIGRRTAERILER 181 (219)
T ss_dssp HHHHHHHTSTTCCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHH
Confidence 34457889999999999988753
No 72
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=56.20 E-value=8.7 Score=29.45 Aligned_cols=47 Identities=15% Similarity=0.122 Sum_probs=33.6
Q ss_pred HHcCCchHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHH
Q 021493 205 RNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 205 r~~Glg~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vl 264 (311)
..++++.||.+...-| |.-.+..|-.++. +.|++++|+|+|+.+-|.
T Consensus 27 e~L~LSvRs~NcLkra---------gI~Tv~dL~~~se----~dLlki~n~G~KSl~EI~ 73 (98)
T 1coo_A 27 DDLELTVRSANCLKAE---------AIHYIGDLVQRTE----VELLKTPNLGKKSLTEIK 73 (98)
T ss_dssp GGGTCCTTTHHHHHTT---------TCCBHHHHHTSCH----HHHTTSTTCCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHc---------CCCcHHHHHhCCH----HHHHhcCCCCHHHHHHHH
Confidence 3478888875443322 5556777777754 469999999999998775
No 73
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=55.26 E-value=7.3 Score=30.68 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=28.0
Q ss_pred HHHHHhhcCCccchHHHHHHHHHhcCCCCccc---cchHHHHHHHHc
Q 021493 244 EAIDALCTLPGVGPKVAACIALFSLDQHHAIP---VDTHVWKIATRY 287 (311)
Q Consensus 244 e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fP---VDt~v~Ri~~r~ 287 (311)
.+.-.|+.|.|||+.+|..||--+-=.++.-. -|..+.++...+
T Consensus 13 ~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 13 HAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEV 59 (114)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHH
T ss_pred EeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHH
Confidence 35668999999999999999865422222222 144555555443
No 74
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=55.12 E-value=5 Score=40.04 Aligned_cols=16 Identities=50% Similarity=0.644 Sum_probs=15.1
Q ss_pred HhhcCCccchHHHHHH
Q 021493 248 ALCTLPGVGPKVAACI 263 (311)
Q Consensus 248 ~L~~l~GIG~ktAd~v 263 (311)
.|.++||||+|||+-|
T Consensus 132 ~L~~~~GiG~Ktaq~I 147 (578)
T 2w9m_A 132 ELAGLKGFGAKSAATI 147 (578)
T ss_dssp TTTTSTTCCHHHHHHH
T ss_pred ccccCCCCCHHHHHHH
Confidence 7889999999999988
No 75
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=54.63 E-value=20 Score=25.96 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=21.6
Q ss_pred CCCHHHHhcCCHHHHHHcCCc---hHHHHHH
Q 021493 190 FPSLERLSLVSEVELRNAGFG---YRAKYIT 217 (311)
Q Consensus 190 FPtpe~La~~~~e~Lr~~Glg---~RA~~I~ 217 (311)
|-+.+.|..+++++|+++|+. .|.+.+.
T Consensus 31 ~d~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ 61 (81)
T 1ucv_A 31 YSSLGMVLRMNAQDVRALGITLMGHQKKILG 61 (81)
T ss_dssp CCBHHHHTTCCHHHHHHHTCCCHHHHHHHHH
T ss_pred CChHHHHHHcCHHHHHhCCCCChhHHHHHHH
Confidence 446899999999999999984 4654443
No 76
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=51.68 E-value=6.7 Score=32.28 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=27.1
Q ss_pred HHHHhhcCCccchHHHHHHHHHhcCCCCccc---cchHHHHHHHH
Q 021493 245 AIDALCTLPGVGPKVAACIALFSLDQHHAIP---VDTHVWKIATR 286 (311)
Q Consensus 245 ~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fP---VDt~v~Ri~~r 286 (311)
+.-.|+.|+|||+.+|..||--+-=.++.-. -|..+.++...
T Consensus 28 v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~ 72 (146)
T 3u5c_S 28 IVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQI 72 (146)
T ss_dssp TTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHH
T ss_pred hHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHH
Confidence 4558999999999999999865522222221 24456555544
No 77
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=50.98 E-value=3.2 Score=36.98 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=0.0
Q ss_pred HHhhcCCccchHHHHHHHHHhcC
Q 021493 247 DALCTLPGVGPKVAACIALFSLD 269 (311)
Q Consensus 247 ~~L~~l~GIG~ktAd~vlLf~l~ 269 (311)
..|.+||||||++|.-++-.+++
T Consensus 15 ~~L~~IpGIGpk~a~~Ll~~gf~ 37 (241)
T 1vq8_Y 15 TELTDISGVGPSKAESLREAGFE 37 (241)
T ss_dssp -----------------------
T ss_pred hHHhcCCCCCHHHHHHHHHcCCC
Confidence 35566666666666655544333
No 78
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=50.48 E-value=8.8 Score=31.78 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.2
Q ss_pred HHHHHHhhcCCccchHHHHHHHHHh
Q 021493 243 QEAIDALCTLPGVGPKVAACIALFS 267 (311)
Q Consensus 243 ~e~~~~L~~l~GIG~ktAd~vlLf~ 267 (311)
..+.-.|+.|+|||+.+|..||--+
T Consensus 24 k~v~~ALt~I~GIG~~~A~~I~~~~ 48 (152)
T 3iz6_M 24 QKIMFALTSIKGVGRRFSNIVCKKA 48 (152)
T ss_dssp SBHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred cEeHhhhhhccCcCHHHHHHHHHHc
Confidence 3467789999999999999998655
No 79
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.81 E-value=8.8 Score=31.64 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.7
Q ss_pred HHHHHhhcCCccchHHHHHHHHHh
Q 021493 244 EAIDALCTLPGVGPKVAACIALFS 267 (311)
Q Consensus 244 e~~~~L~~l~GIG~ktAd~vlLf~ 267 (311)
.+.-.|+.|+|||+.+|..||--+
T Consensus 20 ~v~~aLt~I~GIG~~~A~~I~~~~ 43 (148)
T 3j20_O 20 QLRWALTAIKGIGINFATMVCRVA 43 (148)
T ss_dssp CHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred EehhhhhhccCcCHHHHHHHHHHh
Confidence 366789999999999999998655
No 80
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=48.19 E-value=32 Score=26.84 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=37.5
Q ss_pred CHHHHHHcCCchHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHh
Q 021493 200 SEVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFS 267 (311)
Q Consensus 200 ~~e~Lr~~Glg~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~ 267 (311)
+.++|..+|++.. .++.+.+ .|-.+++.+...+ .+.|..++|||+-.|+-|+--+
T Consensus 24 ~I~~L~~~GIg~~------~i~kL~e---AG~~Tve~va~a~----~~eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 24 PISRLEQCGINAN------DVKKLEE---AGFHTVEAVAYAP----KKELINIKGISEAKADKILAEA 78 (114)
T ss_dssp CHHHHHHTTCSHH------HHHHHHT---TCCSSGGGBTSSB----HHHHHTTTTCSTTHHHHHHHHH
T ss_pred cHHHHHhcCCCHH------HHHHHHH---cCcCcHHHHHhCC----HHHHHHccCCCHHHHHHHHHHH
Confidence 4566777787742 1233443 2566677776654 6789999999999999887655
No 81
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=47.60 E-value=18 Score=34.31 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHH
Q 021493 219 TVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 219 ~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vl 264 (311)
+|+.+.++|+ +++.+.+.+. ++|.++.|||++.|..|-
T Consensus 327 iae~Lv~~FG----sLq~Il~AS~----eEL~~VeGIGe~rAr~Ir 364 (377)
T 3c1y_A 327 IGYNVVRMFK----TLDQISKASV----EDLKKVEGIGEKRARAIS 364 (377)
T ss_dssp HHHHHHHHHC----SHHHHTTCCH----HHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHHHhC----CHHHHHhCCH----HHHHhccCccHHHHHHHH
Confidence 4778888875 4777777665 468999999999998763
No 82
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=46.29 E-value=27 Score=37.43 Aligned_cols=67 Identities=12% Similarity=0.000 Sum_probs=35.7
Q ss_pred HHHhcCCHHHHHHcCCc-h-----H---HHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHH
Q 021493 194 ERLSLVSEVELRNAGFG-Y-----R---AKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 194 e~La~~~~e~Lr~~Glg-~-----R---A~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vl 264 (311)
.+|+.+++++++++|+| | + .+.|-.....+++.- .+++.... +.+-....|..++||||..|..|+
T Consensus 660 aElvki~pkdi~sigvg~yQhdv~q~~L~~~L~~vv~d~VN~v---GVdiNtA~--~~~~s~~lL~~v~GlGp~kA~~Iv 734 (1030)
T 3psf_A 660 LEYANLTSEEVRSLSIHPHQNLLSSEQLSWALETAFVDIVNLV---SVEVNKAT--DNNYYASALKYISGFGKRKAIDFL 734 (1030)
T ss_dssp HHHHTSCHHHHHTSCCCTTGGGSCHHHHHHHHHHHHHHHHHHH---CEEHHHHH--TCHHHHTTGGGSTTCCHHHHHHHH
T ss_pred HHHhccCcccceeeeccccccccCHHHHHHHHHHHHHhhcccc---CccHHHhh--cCcCCHHHHhhCCCCCHHHHHHHH
Confidence 46677788888899987 4 2 233333333333321 12333211 111135566677888887777776
Q ss_pred H
Q 021493 265 L 265 (311)
Q Consensus 265 L 265 (311)
-
T Consensus 735 ~ 735 (1030)
T 3psf_A 735 Q 735 (1030)
T ss_dssp H
T ss_pred H
Confidence 4
No 83
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=46.16 E-value=11 Score=31.23 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=20.3
Q ss_pred HHHHHhhcCCccchHHHHHHHHHh
Q 021493 244 EAIDALCTLPGVGPKVAACIALFS 267 (311)
Q Consensus 244 e~~~~L~~l~GIG~ktAd~vlLf~ 267 (311)
.+.-.|+.|+|||+.+|..||-.+
T Consensus 27 ~v~~aLt~I~GIG~~~A~~I~~~~ 50 (155)
T 2xzm_M 27 ITPIALTGIRGIGRRFAYIICKVL 50 (155)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred EEEEeeecccccCHHHHHHHHHHc
Confidence 356689999999999999998654
No 84
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=43.63 E-value=4.9 Score=35.78 Aligned_cols=49 Identities=27% Similarity=0.402 Sum_probs=0.0
Q ss_pred HHHH-cCCch-HHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHH
Q 021493 203 ELRN-AGFGY-RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIAL 265 (311)
Q Consensus 203 ~Lr~-~Glg~-RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlL 265 (311)
+|.. -|+|. +|+.|... -+. +++.|. ....++|.+++|||+++|+-|..
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~--gf~--------sve~L~----~a~~~eL~~v~GIG~ktAe~I~~ 66 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREA--GFE--------SVEDVR----GADQSALADVSGIGNALAARIKA 66 (241)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHhcCCCCCHHHHHHHHHc--CCC--------CHHHHH----hCCHHHHHhccCCCHHHHHHHHH
Confidence 4433 38885 66666543 111 234442 23456899999999999998854
No 85
>2lkw_A Membrane fusion protein P15; viral protein; NMR {Baboon orthoreovirus}
Probab=42.55 E-value=8.6 Score=21.55 Aligned_cols=10 Identities=60% Similarity=1.192 Sum_probs=7.0
Q ss_pred CCCCCCCCCc
Q 021493 18 PQPPPTPPNP 27 (311)
Q Consensus 18 ~~~~~~~~~~ 27 (311)
-|||.+|||.
T Consensus 8 vqppapppna 17 (26)
T 2lkw_A 8 VQPPAPPPNA 17 (26)
T ss_pred ccCCCcCCCe
Confidence 4777777774
No 86
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=42.11 E-value=20 Score=24.68 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=23.5
Q ss_pred ccCCCHHHHhcCCHHHHHHcCCch-H-HHHHHH
Q 021493 188 HEFPSLERLSLVSEVELRNAGFGY-R-AKYITG 218 (311)
Q Consensus 188 ~~FPtpe~La~~~~e~Lr~~Glg~-R-A~~I~~ 218 (311)
..|-+.+.|.+++.++|..+ +|. . |+.|.+
T Consensus 22 ~~Fgs~~~i~~As~eeL~~v-ig~~~~A~~I~~ 53 (63)
T 2a1j_A 22 HHVKNIAELAALSQDELTSI-LGNAANAKQLYD 53 (63)
T ss_dssp HHCSSHHHHHTCCHHHHHHH-HSCHHHHHHHHH
T ss_pred HHcCCHHHHHHCCHHHHHHH-cCchHHHHHHHH
Confidence 35669999999999999887 663 4 777754
No 87
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=41.83 E-value=33 Score=35.66 Aligned_cols=73 Identities=25% Similarity=0.228 Sum_probs=44.9
Q ss_pred CCHHHHHH-cCCch-HHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcCCCCcccc
Q 021493 199 VSEVELRN-AGFGY-RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPV 276 (311)
Q Consensus 199 ~~~e~Lr~-~Glg~-RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fPV 276 (311)
++.++|.. .|+|. +|+.|++.-+. . |+ +. .+++|.+++|||+++-+-+.-|-.=.....|.
T Consensus 505 As~~~L~~v~GiG~~~A~~Iv~yR~~----~-G~---f~---------sr~~L~~V~giG~k~~ekl~~FL~i~G~~~pL 567 (785)
T 3bzc_A 505 ASAALLARISGLNSTLAQNIVAHRDA----N-GA---FR---------TRDELKKVSRLGEKTFEQAAGFLRVMNGDNPL 567 (785)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHHHH----H-CC---CS---------SGGGGGGSTTCCHHHHHHHGGGEECTTSSCGG
T ss_pred CCHHHHhhcCCCCHHHHHHHHHHHHh----c-CC---CC---------CHHHHHhcCCCCHHHHHHhhheEEECCccccc
Confidence 46677766 59985 89888864322 1 21 11 25688899999999988866554222223445
Q ss_pred ch---------HHHHHHHHcC
Q 021493 277 DT---------HVWKIATRYL 288 (311)
Q Consensus 277 Dt---------~v~Ri~~r~~ 288 (311)
|. .+.+++..++
T Consensus 568 D~t~VHPEsY~~a~kil~~~g 588 (785)
T 3bzc_A 568 DASAVHPETYPLVQRIAADTE 588 (785)
T ss_dssp GGSSCCGGGHHHHHHHHHHHT
T ss_pred ccCcCCHHHHHHHHHHHHHcC
Confidence 42 3456666654
No 88
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=41.39 E-value=32 Score=37.52 Aligned_cols=67 Identities=12% Similarity=-0.003 Sum_probs=34.2
Q ss_pred HHHhcCCHHHHHHcCCc-h-----H---HHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHH
Q 021493 194 ERLSLVSEVELRNAGFG-Y-----R---AKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 194 e~La~~~~e~Lr~~Glg-~-----R---A~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vl 264 (311)
.+|+.+++++++++|+| | + .+.|-.....+++.- | +|+.... +.+-....|..++||||..|..|+
T Consensus 657 aElvki~pkdi~sigvg~yQhdv~q~~L~~~L~~vv~d~VN~v-G--VdiNtA~--~~~~s~~lL~~v~GlGp~kA~~Iv 731 (1219)
T 3psi_A 657 LEYANLTSEEVRSLSIHPHQNLLSSEQLSWALETAFVDIVNLV-S--VEVNKAT--DNNYYASALKYISGFGKRKAIDFL 731 (1219)
T ss_dssp HHHHHSCHHHHHTSCCCTTGGGSCHHHHHHHHHHHHHHHHHHH-C--EEHHHHT--TCHHHHTTGGGSTTCCHHHHHHHH
T ss_pred HHHhccCcccceeeeccccccccCHHHHHHHHHHHHHHHHhcc-C--ccHHHhh--cCcCCHHHHHhCCCCCHHHHHHHH
Confidence 36667777888889987 3 2 223333333333321 1 2332211 111125566667777777777765
Q ss_pred H
Q 021493 265 L 265 (311)
Q Consensus 265 L 265 (311)
-
T Consensus 732 ~ 732 (1219)
T 3psi_A 732 Q 732 (1219)
T ss_dssp H
T ss_pred H
Confidence 3
No 89
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=41.17 E-value=33 Score=24.42 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=22.9
Q ss_pred CHHHHhcCCHHHHHHcCC--chHHHHHHHHH
Q 021493 192 SLERLSLVSEVELRNAGF--GYRAKYITGTV 220 (311)
Q Consensus 192 tpe~La~~~~e~Lr~~Gl--g~RA~~I~~~A 220 (311)
+.+.|..+++++|+++|+ |.|-+-+..+.
T Consensus 27 d~e~l~~lt~~DL~~lGI~~G~RkkIl~ai~ 57 (74)
T 3k1r_B 27 DLEALMLCSDLDLRSISVPLGPREKILGAVR 57 (74)
T ss_dssp CHHHHTTCCHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHhHCCHHHHHHcCCCcchHHHHHHHHH
Confidence 789999999999999998 45755555443
No 90
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=41.08 E-value=5.7 Score=40.16 Aligned_cols=22 Identities=36% Similarity=0.677 Sum_probs=0.0
Q ss_pred HHHhhcCCccchHHHHHHHHHh
Q 021493 246 IDALCTLPGVGPKVAACIALFS 267 (311)
Q Consensus 246 ~~~L~~l~GIG~ktAd~vlLf~ 267 (311)
.++|.+++|||+++|..|.-|-
T Consensus 560 ~eeL~~I~GIG~~~A~sI~~ff 581 (615)
T 3sgi_A 560 TDQLAAVEGVGPTIAAAVTEWF 581 (615)
T ss_dssp ----------------------
T ss_pred HHHHhhCCCCCHHHHHHHHHHH
Confidence 4689999999999999987543
No 91
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=40.52 E-value=12 Score=29.99 Aligned_cols=23 Identities=22% Similarity=0.027 Sum_probs=19.5
Q ss_pred HHHHHhhcCCccchHHHHHHHHH
Q 021493 244 EAIDALCTLPGVGPKVAACIALF 266 (311)
Q Consensus 244 e~~~~L~~l~GIG~ktAd~vlLf 266 (311)
.+.-.|+.|.|||+.+|..||--
T Consensus 14 ~v~~aLt~I~GIG~~~A~~I~~~ 36 (126)
T 2vqe_M 14 RVDVALTYIYGIGKARAKEALEK 36 (126)
T ss_dssp BHHHHHTTSSSCCSHHHHHHTTT
T ss_pred EeeeehhccccccHHHHHHHHHH
Confidence 35668999999999999999753
No 92
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=39.17 E-value=35 Score=24.50 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=23.0
Q ss_pred CCCHHHHhcCCHHHHHHcCCc---hHHHHHHHH
Q 021493 190 FPSLERLSLVSEVELRNAGFG---YRAKYITGT 219 (311)
Q Consensus 190 FPtpe~La~~~~e~Lr~~Glg---~RA~~I~~~ 219 (311)
|-+.+.|..+++++|+++|+. .|.+.+.++
T Consensus 35 ~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~ai 67 (82)
T 1b4f_A 35 FTSFDVVSQMMMEDILRVGVTLAGHQKKILNSI 67 (82)
T ss_dssp CCSHHHHTTCCHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHH
Confidence 447899999999999999984 465555433
No 93
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=38.27 E-value=31 Score=24.90 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=23.2
Q ss_pred cCCCHHHHhcCCHHHHHHcCCc---hHHHHHHH
Q 021493 189 EFPSLERLSLVSEVELRNAGFG---YRAKYITG 218 (311)
Q Consensus 189 ~FPtpe~La~~~~e~Lr~~Glg---~RA~~I~~ 218 (311)
.|-+.+.|..+++++|+++|+. .|.+.+.+
T Consensus 38 ~~~~~~~l~~lt~~dL~~lGI~~~GhrkkIl~a 70 (83)
T 2qkq_A 38 GFGSFELVSQISAEDLLRIGVTLAGHQKKILAS 70 (83)
T ss_dssp TCCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCCcHHHHhhCCHHHHHHCCCCCHHHHHHHHHH
Confidence 3468999999999999999985 46555443
No 94
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.99 E-value=32 Score=25.18 Aligned_cols=31 Identities=6% Similarity=0.294 Sum_probs=23.4
Q ss_pred CCCHHHHhcCCHHHHHHcCCc---hHHHHHHHHH
Q 021493 190 FPSLERLSLVSEVELRNAGFG---YRAKYITGTV 220 (311)
Q Consensus 190 FPtpe~La~~~~e~Lr~~Glg---~RA~~I~~~A 220 (311)
|-+.+.|..+++++|+++|+. .|.+.+.++.
T Consensus 36 ~~~~~~l~~lt~~dL~~lGI~~~GhRkkIl~ai~ 69 (88)
T 2e8n_A 36 YTAIEKVVQMTNDDVKRIGVRLPGHQKRIAYSLL 69 (88)
T ss_dssp CSSHHHHTTSCTTHHHHTTCCSHHHHHHHHHHHH
T ss_pred CChHHHHHhCCHHHHHHCCCCChhHHHHHHHHHH
Confidence 446899999999999999984 4765554433
No 95
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=34.78 E-value=34 Score=24.86 Aligned_cols=34 Identities=9% Similarity=0.273 Sum_probs=24.4
Q ss_pred CCCHHHHhcCCHHHHHHcCCc---hHHHHHHHHHHHHH
Q 021493 190 FPSLERLSLVSEVELRNAGFG---YRAKYITGTVDVLQ 224 (311)
Q Consensus 190 FPtpe~La~~~~e~Lr~~Glg---~RA~~I~~~A~~i~ 224 (311)
|-+.+.|..+++++|+++|+. .|.+.+.+ .+.+.
T Consensus 40 id~~~~L~~lt~~DL~~lGI~~~GhRkkIl~a-i~~Lr 76 (82)
T 2kso_A 40 YTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYS-LLGLK 76 (82)
T ss_dssp CCSHHHHTTCCHHHHHHHHCCCTTHHHHHHHH-HHHHH
T ss_pred CChHHHHHhCCHHHHHHCCCCChhHHHHHHHH-HHHHH
Confidence 446999999999999999874 47555543 33443
No 96
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=32.45 E-value=56 Score=24.17 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=23.2
Q ss_pred CCCHHHHhcCCHHHHHHcCCc---hHHHHHHHH
Q 021493 190 FPSLERLSLVSEVELRNAGFG---YRAKYITGT 219 (311)
Q Consensus 190 FPtpe~La~~~~e~Lr~~Glg---~RA~~I~~~ 219 (311)
|-+.+.|..+++++|+++|+. .|.+.+.++
T Consensus 50 ~~~~~~l~~lt~~DL~~lGI~~~GhrkkIl~ai 82 (94)
T 1b0x_A 50 YTTLEAVVHMSQDDLARIGITAITHQNKILSSV 82 (94)
T ss_dssp CCSHHHHTTCCHHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCCHHHHhhCCHHHHHHCCCCChhHHHHHHHHH
Confidence 457899999999999999984 466555443
No 97
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=31.91 E-value=9.7 Score=33.54 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHhhcCCccchHHHHHHH
Q 021493 246 IDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 246 ~~~L~~l~GIG~ktAd~vl 264 (311)
.++|.++ |||+++|..|.
T Consensus 204 ~eeL~~V-GIG~~~A~~I~ 221 (226)
T 3c65_A 204 VEELQRA-NIPRAVAEKIY 221 (226)
T ss_dssp -------------------
T ss_pred HHHHHHc-CCCHHHHHHHH
Confidence 4567888 88888888764
No 98
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=31.77 E-value=74 Score=20.45 Aligned_cols=43 Identities=21% Similarity=0.187 Sum_probs=24.5
Q ss_pred HHHHhcCCHHHHHHcCCchHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhc
Q 021493 193 LERLSLVSEVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCT 251 (311)
Q Consensus 193 pe~La~~~~e~Lr~~Glg~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~ 251 (311)
|++-.+...+.|++.||..|...+..+... +| +.+.+.+.|.+
T Consensus 3 p~~~~~~~i~~L~~MGF~d~~~~~~AL~~~-----~g-----------nv~~Ave~L~~ 45 (46)
T 2bwb_A 3 PEERYEHQLRQLNDMGFFDFDRNVAALRRS-----GG-----------SVQGALDSLLN 45 (46)
T ss_dssp HHHHTHHHHHHHHHTTCCCHHHHHHHHHHH-----TT-----------CHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHcCCCcHHHHHHHHHHh-----CC-----------CHHHHHHHHHc
Confidence 444444445678889986554444433221 23 56777777754
No 99
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.79 E-value=47 Score=24.88 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=24.4
Q ss_pred CCCHHHHhcCCHHHHHHcCCc---hHHHHHHHHHHHHH
Q 021493 190 FPSLERLSLVSEVELRNAGFG---YRAKYITGTVDVLQ 224 (311)
Q Consensus 190 FPtpe~La~~~~e~Lr~~Glg---~RA~~I~~~A~~i~ 224 (311)
|-+.+.|..+++++|+++|+. .|.+.+.+ .+.+.
T Consensus 46 ~~~~~~L~~lt~~DL~~lGI~~~GhRkkIl~a-i~~l~ 82 (99)
T 2eao_A 46 FTSLQLVTQMTSEDLLRIGITLAGHQKKILNS-IHSMR 82 (99)
T ss_dssp CCBHHHHTTCCHHHHHHHTCCCHHHHHHHHHH-HHHHH
T ss_pred CChHHHHhhCCHHHHHHCCCCChhHHHHHHHH-HHHHH
Confidence 446899999999999999984 46555543 33444
No 100
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=30.69 E-value=39 Score=24.96 Aligned_cols=35 Identities=14% Similarity=0.363 Sum_probs=25.2
Q ss_pred CCCHHHHhcCCHHHHHHcCCc---hHHHHHHHHHHHHHH
Q 021493 190 FPSLERLSLVSEVELRNAGFG---YRAKYITGTVDVLQS 225 (311)
Q Consensus 190 FPtpe~La~~~~e~Lr~~Glg---~RA~~I~~~A~~i~~ 225 (311)
|-+.+.|..+++++|+++|+. .|.+.+..+ +.+..
T Consensus 39 ~~~~~~l~~lt~~DL~~lGI~~~GHrkkIl~ai-~~L~~ 76 (91)
T 1x40_A 39 FTTVKDCAAINDSLLQKIGISPTGHRRRILKQL-QIILS 76 (91)
T ss_dssp CCBSGGGGGCCHHHHHHHTCCCHHHHHHHHHHH-HHHHH
T ss_pred CCcHHHHhhcCHHHHHHCCCCCHhHHHHHHHHH-HHHHh
Confidence 456889999999999999984 476555544 34443
No 101
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.71 E-value=58 Score=23.03 Aligned_cols=50 Identities=22% Similarity=0.153 Sum_probs=31.1
Q ss_pred CHHHHhcCCHHHHHHcCCchHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhc-CCccch
Q 021493 192 SLERLSLVSEVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCT-LPGVGP 257 (311)
Q Consensus 192 tpe~La~~~~e~Lr~~Glg~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~-l~GIG~ 257 (311)
.||+-.+...+.|++.||..|...+..+- .. +| +.+.++++|.+ .++-||
T Consensus 14 ~pe~~y~~ql~qL~~MGF~d~~an~~AL~----at-~G-----------nve~Ave~L~~~~~~~~~ 64 (67)
T 2dna_A 14 APEVRFSKEMECLQAMGFVNYNANLQALI----AT-DG-----------DTNAAIYKLKSSQGFSGP 64 (67)
T ss_dssp CHHHHTHHHHHHHHHHTCCCHHHHHHHHH----HT-TS-----------CHHHHHHHHHHCCSSSCC
T ss_pred ChHHHHHHHHHHHHHcCCCcHHHHHHHHH----Hc-CC-----------CHHHHHHHHHhCCCccCC
Confidence 46665555567789999976654444332 21 23 67788998885 555443
No 102
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=29.40 E-value=75 Score=22.43 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=31.3
Q ss_pred cCCCHHHHhcCCHHHHHH-cCCc-hHHHHHHHHHHHHHH
Q 021493 189 EFPSLERLSLVSEVELRN-AGFG-YRAKYITGTVDVLQS 225 (311)
Q Consensus 189 ~FPtpe~La~~~~e~Lr~-~Glg-~RA~~I~~~A~~i~~ 225 (311)
.|-|.+.++-++.++|-. -|++ -++.-|+..|+.+..
T Consensus 26 Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~~l~ 64 (70)
T 1u9l_A 26 GFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALA 64 (70)
T ss_dssp TCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHHHHH
T ss_pred CcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 366999999999999988 4898 599999998887764
No 103
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=29.40 E-value=59 Score=23.83 Aligned_cols=30 Identities=7% Similarity=0.295 Sum_probs=22.8
Q ss_pred CCCHHHHhcCCHHHHHHcCCc---hHHHHHHHH
Q 021493 190 FPSLERLSLVSEVELRNAGFG---YRAKYITGT 219 (311)
Q Consensus 190 FPtpe~La~~~~e~Lr~~Glg---~RA~~I~~~ 219 (311)
|=+.+.|..+++++|+++|+. .|-+.+.++
T Consensus 45 ~d~le~l~~lt~~DL~~LGIt~~GHRkkIL~ai 77 (86)
T 3kka_C 45 YTAIEKVVQMTNDDIKRIGVRLPGHQKRIAYSL 77 (86)
T ss_dssp CCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CChHHHHHhCCHHHHHHCCCCCHHHHHHHHHHH
Confidence 446899999999999999984 465555443
No 104
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=29.36 E-value=63 Score=23.90 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCCHHHHhcCCHHHHHHcCCc---hHHHHHHHH
Q 021493 190 FPSLERLSLVSEVELRNAGFG---YRAKYITGT 219 (311)
Q Consensus 190 FPtpe~La~~~~e~Lr~~Glg---~RA~~I~~~ 219 (311)
|=+.+.|+.+++++|+++|+. .|-+.+.++
T Consensus 49 ~d~~e~l~~lt~~DL~~lGIt~~GHRkkIL~ai 81 (90)
T 3h8m_A 49 YNSLESVARMTIEDVMSLGITLVGHQKKIMSSI 81 (90)
T ss_dssp CCSHHHHHTCCHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CChHHHHhhCCHHHHHHCCCCCHHHHHHHHHHH
Confidence 446999999999999999984 465555443
No 105
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=28.64 E-value=30 Score=30.25 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHhhcCCccchHHHHHHH
Q 021493 245 AIDALCTLPGVGPKVAACIA 264 (311)
Q Consensus 245 ~~~~L~~l~GIG~ktAd~vl 264 (311)
....|..|||||+++|.-.+
T Consensus 166 ~~s~LdgIpGIG~k~ak~Ll 185 (220)
T 2nrt_A 166 LRSVLDNVPGIGPIRKKKLI 185 (220)
T ss_dssp HHHHHTTSTTCCHHHHHHHH
T ss_pred ccccccCCCCcCHHHHHHHH
No 106
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=28.25 E-value=23 Score=32.25 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=15.5
Q ss_pred HhhcCCccchHHHHHHHHHhcCC
Q 021493 248 ALCTLPGVGPKVAACIALFSLDQ 270 (311)
Q Consensus 248 ~L~~l~GIG~ktAd~vlLf~l~~ 270 (311)
-+-.+||||+|||--++- -+|.
T Consensus 204 niPGVpGIG~KTA~kLL~-~~gs 225 (290)
T 1exn_A 204 NIRGVEGIGAKRGYNIIR-EFGN 225 (290)
T ss_dssp TBCCCTTCCHHHHHHHHH-HHCS
T ss_pred CCCCCCcCCHhHHHHHHH-HcCC
Confidence 344689999999987653 3443
No 107
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=28.17 E-value=44 Score=26.01 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=30.5
Q ss_pred CCCHHHHhcCCHHHHHH-cCCc-hHHHHHHHHHHHHHH
Q 021493 190 FPSLERLSLVSEVELRN-AGFG-YRAKYITGTVDVLQS 225 (311)
Q Consensus 190 FPtpe~La~~~~e~Lr~-~Glg-~RA~~I~~~A~~i~~ 225 (311)
|-|.+.|+.++.++|.. .|++ .||.-|+..|+.+..
T Consensus 46 ~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl~~ 83 (114)
T 1b22_A 46 FHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVP 83 (114)
T ss_dssp CSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHSC
T ss_pred cCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHHcc
Confidence 45899999999999976 6998 499999999988753
No 108
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=27.01 E-value=76 Score=22.61 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=25.9
Q ss_pred cCCCHHHHhcCCHHHHHHcCCc---hHHHHHHHHHHHHH
Q 021493 189 EFPSLERLSLVSEVELRNAGFG---YRAKYITGTVDVLQ 224 (311)
Q Consensus 189 ~FPtpe~La~~~~e~Lr~~Glg---~RA~~I~~~A~~i~ 224 (311)
.|=+.+.+..+++++|.++|+. .|.+.+. .++.+.
T Consensus 35 gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~-ai~~L~ 72 (78)
T 1v38_A 35 GYETLDDLKDIKESHLIELNIADPEDRARLLS-AAESLL 72 (78)
T ss_dssp TCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHH-HHHHHH
T ss_pred CCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHH-HHHHHH
Confidence 3557999999999999999985 4766554 444444
No 109
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=26.95 E-value=78 Score=23.22 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=23.1
Q ss_pred cCCCHHHHhcCCHHHHHHcCCc---hHHHHHHH
Q 021493 189 EFPSLERLSLVSEVELRNAGFG---YRAKYITG 218 (311)
Q Consensus 189 ~FPtpe~La~~~~e~Lr~~Glg---~RA~~I~~ 218 (311)
.|-+.+.|..+++++|+++|+. .|.+.+.+
T Consensus 49 g~~~le~l~~lt~~DL~~lGIt~~GHRkkIL~a 81 (86)
T 2k4p_A 49 GWDDLEFLSDITEEDLEEAGVQDPAHKRLLLDT 81 (86)
T ss_dssp TCCCHHHHTTCCHHHHHHTTCCCHHHHHHHHHH
T ss_pred CCChHHHHHhCCHHHHHHCCCCCHHHHHHHHHH
Confidence 3457899999999999999985 36555543
No 110
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A*
Probab=26.12 E-value=26 Score=32.50 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=12.3
Q ss_pred cCCccchHHHHHHHH
Q 021493 251 TLPGVGPKVAACIAL 265 (311)
Q Consensus 251 ~l~GIG~ktAd~vlL 265 (311)
.+||||+|||--++-
T Consensus 236 gipGiG~KtA~kll~ 250 (341)
T 3q8k_A 236 SIRGIGPKRAVDLIQ 250 (341)
T ss_dssp CCTTCCHHHHHHHHH
T ss_pred CCCCccHHHHHHHHH
Confidence 589999999976653
No 111
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=25.22 E-value=48 Score=24.30 Aligned_cols=30 Identities=27% Similarity=0.398 Sum_probs=23.4
Q ss_pred ccCCCHHHHhcCCHHHHHHcCCch-H-HHHHHH
Q 021493 188 HEFPSLERLSLVSEVELRNAGFGY-R-AKYITG 218 (311)
Q Consensus 188 ~~FPtpe~La~~~~e~Lr~~Glg~-R-A~~I~~ 218 (311)
..|.+.+.|.+++.++|..+ +|. . |+.|.+
T Consensus 36 ~~FgSl~~i~~AS~eEL~~v-ig~~~~A~~I~~ 67 (84)
T 1z00_B 36 HHVKNIAELAALSQDELTSI-LGNAANAKQLYD 67 (84)
T ss_dssp HHSSCHHHHHHSCHHHHHHH-HSCHHHHHHHHH
T ss_pred HHcCCHHHHHHCCHHHHHHH-hCchHHHHHHHH
Confidence 35669999999999999987 663 3 677654
No 112
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=25.11 E-value=38 Score=30.59 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=19.7
Q ss_pred HHHHHHhhcCCccchHHHHHHHH
Q 021493 243 QEAIDALCTLPGVGPKVAACIAL 265 (311)
Q Consensus 243 ~e~~~~L~~l~GIG~ktAd~vlL 265 (311)
+.....|++||||++..|..|+-
T Consensus 233 e~~~~mL~~IpGVs~~~A~~I~~ 255 (311)
T 2ziu_A 233 EVFARQLMQISGVSGDKAAAVLE 255 (311)
T ss_dssp HHHHHHHTTBTTCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHH
Confidence 34678999999999999999964
No 113
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=24.88 E-value=74 Score=25.07 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=22.3
Q ss_pred CHHHHhcCCHHHHHHcCCc---hHHHHHHHHH
Q 021493 192 SLERLSLVSEVELRNAGFG---YRAKYITGTV 220 (311)
Q Consensus 192 tpe~La~~~~e~Lr~~Glg---~RA~~I~~~A 220 (311)
+++.+..+++++|+.+|+. .|-|.+..++
T Consensus 72 ~~d~l~~LTeeDL~~lGVta~GaRrKlL~AI~ 103 (119)
T 2b6g_A 72 PWIELIYLDDETLEKKGVLALGARRKLLKAFG 103 (119)
T ss_dssp CHHHHTTCCHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CHHHHHhcCHHHHHHCCCCccccHHHHHHHHH
Confidence 7899999999999999985 3655554443
No 114
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=24.40 E-value=56 Score=23.72 Aligned_cols=29 Identities=10% Similarity=0.253 Sum_probs=22.0
Q ss_pred CCCHHHHhcCCHHHHHHcCCc---hHHHHHHH
Q 021493 190 FPSLERLSLVSEVELRNAGFG---YRAKYITG 218 (311)
Q Consensus 190 FPtpe~La~~~~e~Lr~~Glg---~RA~~I~~ 218 (311)
|=+.+.|+.+++++|+++|+. .|-|.+.+
T Consensus 47 ~~s~e~l~~lt~~DL~~lGIt~~GHRkkIL~a 78 (82)
T 3hil_A 47 LDTMECVLELTAEDLTQMGITLPGHQKRILCS 78 (82)
T ss_dssp CCSGGGGTTCCHHHHHHTTCCCHHHHHHHHHH
T ss_pred CChHHHHhcCCHHHHHHCCCCCHHHHHHHHHH
Confidence 446889999999999999984 46554443
No 115
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=23.98 E-value=42 Score=25.19 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=18.7
Q ss_pred HHhhcCCccchHHHHHHHHHhcCC
Q 021493 247 DALCTLPGVGPKVAACIALFSLDQ 270 (311)
Q Consensus 247 ~~L~~l~GIG~ktAd~vlLf~l~~ 270 (311)
..|..||+||++++......|...
T Consensus 4 ~~L~~LPNiG~~~e~~L~~vGI~s 27 (93)
T 3bqs_A 4 ANLSELPNIGKVLEQDLIKAGIKT 27 (93)
T ss_dssp SCGGGSTTCCHHHHHHHHHTTCCS
T ss_pred HHhhcCCCCCHHHHHHHHHcCCCC
Confidence 358889999999998877666554
No 116
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=23.03 E-value=1.2e+02 Score=29.81 Aligned_cols=53 Identities=26% Similarity=0.351 Sum_probs=36.0
Q ss_pred cCCc-hHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHh
Q 021493 207 AGFG-YRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFS 267 (311)
Q Consensus 207 ~Glg-~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~ 267 (311)
.|-. +|++.-.++|+.|..- ..++..+.+.. .+.|.+|||||..++..|-.+.
T Consensus 20 ~g~~~~r~~aYr~Aa~~l~~~----~~~i~~~~~~~----~~~~~~lp~iG~~~~~~i~~~v 73 (575)
T 3b0x_A 20 LGDNPFRVRAYHQAARTLYDL----DTPIEEIAEKG----KEALMELPGVGPDLAEKILEFL 73 (575)
T ss_dssp TTCCHHHHHHHHHHHHHHHHC----CSCHHHHHTTC----HHHHHTSTTCCHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHhC----CcchhhHhhcc----hhHHHhCCCCCHHHHHHHHHHH
Confidence 3543 7999999999998862 12344332211 1239999999999999887664
No 117
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=22.70 E-value=1.4e+02 Score=22.24 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=22.6
Q ss_pred CHHHHhcCCHHHHHHcCCc---hHHHHHHHHH
Q 021493 192 SLERLSLVSEVELRNAGFG---YRAKYITGTV 220 (311)
Q Consensus 192 tpe~La~~~~e~Lr~~Glg---~RA~~I~~~A 220 (311)
+++++..+++++|+..|+. .|-|.+..+.
T Consensus 41 ~~~~l~~LtdedL~~~GVta~GaRrKil~aI~ 72 (88)
T 2d3d_A 41 PWIELIYLDDETLEKKGVLALGARRKLLKAFG 72 (88)
T ss_dssp CHHHHTTCCHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CHHHHHHcCHHHHHHcCCccHhHHHHHHHHHH
Confidence 8899999999999999985 3655555433
No 118
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=22.42 E-value=1.3e+02 Score=20.96 Aligned_cols=42 Identities=21% Similarity=0.238 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHh
Q 021493 219 TVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFS 267 (311)
Q Consensus 219 ~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~ 267 (311)
.+..+.+ .|-.+++.|...+ .++|+.++||+.-.|+-+.+-+
T Consensus 19 ~~~kL~e---~Gi~TvedlA~~~----~~eL~~i~gise~kA~~ii~aA 60 (70)
T 1wcn_A 19 LAFKLAA---RGVCTLEDLAEQG----IDDLADIEGLTDEKAGALIMAA 60 (70)
T ss_dssp HHHHHHT---TTCCSHHHHHTSC----HHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHH---cCCCcHHHHHcCC----HHHHHHccCCCHHHHHHHHHHH
Confidence 3445554 2677888887775 4567789999999999887655
No 119
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=22.35 E-value=1.1e+02 Score=20.78 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=26.9
Q ss_pred CHHHHhcCCHHHHHHcCCchHHHHHHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcC
Q 021493 192 SLERLSLVSEVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTL 252 (311)
Q Consensus 192 tpe~La~~~~e~Lr~~Glg~RA~~I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l 252 (311)
.|++-.+...+.|++.||..|...+..+... +| +.+.|.+.|.+-
T Consensus 12 ~pe~~~~~qi~~L~~MGF~d~~~~~~AL~~~-----~g-----------nve~Ave~L~~~ 56 (58)
T 1wr1_B 12 DPEERYEHQLRQLNDMGFFDFDRNVAALRRS-----GG-----------SVQGALDSLLNG 56 (58)
T ss_dssp SHHHHTHHHHHHHHHHTCCCHHHHHHHHHHH-----TS-----------CHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHcCCCcHHHHHHHHHHh-----CC-----------CHHHHHHHHHhC
Confidence 3555554456778889997564444433221 23 667788888753
No 120
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=22.18 E-value=53 Score=28.33 Aligned_cols=69 Identities=25% Similarity=0.353 Sum_probs=47.9
Q ss_pred HHHHHHcCCc-hHHHH-HHHHHHHHHHhcCCCccchhhhhCCCHHHHHHHhhcCCccchHHHHHHHHHhcCCCCccccch
Q 021493 201 EVELRNAGFG-YRAKY-ITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDT 278 (311)
Q Consensus 201 ~e~Lr~~Glg-~RA~~-I~~~A~~i~~~~~gg~~~l~~L~~~~~~e~~~~L~~l~GIG~ktAd~vlLf~l~~~d~fPVDt 278 (311)
.++|++.|.. +++.- +..+-+.|.++++| ....+++..-+.+-|-|-|||=-|.+++++- -.+|+|.
T Consensus 98 ~~~L~~~G~~V~t~tH~lsG~eR~is~kfGG----------~~p~eiiA~tLR~fgqG~KV~vEi~lMAaDA-GlIp~ge 166 (206)
T 1t57_A 98 RDALLERGVNVYAGSHALSGVGRGISNRFGG----------VTPVEIMAETLRMVSQGFKVCVEIAIMAADA-GLIPVDE 166 (206)
T ss_dssp HHHHHHHTCEEECCSCTTTTHHHHHHHHHCS----------CCHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-TSSCSSS
T ss_pred HHHHHhCCCEEEEeeccccchhHHHHHhcCC----------CCHHHHHHHHHHHhCCCceEEEEEeeeeecC-CCCCCCC
Confidence 3567777765 34333 23344556666665 3567778777779999999999999999865 6778876
Q ss_pred HH
Q 021493 279 HV 280 (311)
Q Consensus 279 ~v 280 (311)
+|
T Consensus 167 eV 168 (206)
T 1t57_A 167 EV 168 (206)
T ss_dssp CE
T ss_pred eE
Confidence 54
No 121
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}
Probab=21.67 E-value=2e+02 Score=21.99 Aligned_cols=6 Identities=33% Similarity=0.246 Sum_probs=2.5
Q ss_pred CceEEe
Q 021493 68 LQYTGP 73 (311)
Q Consensus 68 ~~~~gv 73 (311)
+||.|.
T Consensus 92 gWw~g~ 97 (119)
T 2rqr_A 92 DWYRGY 97 (119)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 344443
No 122
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z*
Probab=21.31 E-value=29 Score=32.33 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.1
Q ss_pred hcCCccchHHHHHHHH
Q 021493 250 CTLPGVGPKVAACIAL 265 (311)
Q Consensus 250 ~~l~GIG~ktAd~vlL 265 (311)
-.+||||+|||--++-
T Consensus 228 pgv~GiG~ktA~kli~ 243 (352)
T 3qe9_Y 228 SSLRGIGLAKACKVLR 243 (352)
T ss_dssp CCCTTCCHHHHHHHHH
T ss_pred CCCCCeeHHHHHHHHH
Confidence 4799999999987653
No 123
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=21.05 E-value=74 Score=23.98 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=21.0
Q ss_pred CHHHHhcCCHHHHHHcCCc---hHHHHHHH
Q 021493 192 SLERLSLVSEVELRNAGFG---YRAKYITG 218 (311)
Q Consensus 192 tpe~La~~~~e~Lr~~Glg---~RA~~I~~ 218 (311)
+.+.|..++.++|+++|+. .|.+.+.+
T Consensus 52 ~~~~L~~Lt~eDLkeLGIt~~GhRkkIL~a 81 (100)
T 2kg5_A 52 TAGAARGLGHEELKQLGISATGHRKRILRL 81 (100)
T ss_dssp BHHHHTTCCHHHHHHHTCCCHHHHHHHHHH
T ss_pred hHHHHHhcCHHHHHHCCCCChhHHHHHHHH
Confidence 4899999999999999985 36554443
No 124
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=21.05 E-value=20 Score=31.46 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHhhcCCccchHHHHHHHHHhcCCCCcc
Q 021493 245 AIDALCTLPGVGPKVAACIALFSLDQHHAI 274 (311)
Q Consensus 245 ~~~~L~~l~GIG~ktAd~vlLf~l~~~d~f 274 (311)
....|..|||||+++|.-++- .+|..+.+
T Consensus 171 ~~s~L~~IpGIG~k~ak~Ll~-~FGSl~~i 199 (226)
T 3c65_A 171 FHSVLDDIPGVGEKRKKALLN-YFGSVKKM 199 (226)
T ss_dssp ------------------------------
T ss_pred ccccccccCCCCHHHHHHHHH-HhCCHHHH
Confidence 356788999999999998764 34544443
No 125
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=20.97 E-value=2.3e+02 Score=20.20 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=43.9
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhhCCCCccccccccccCCCHHHHhcCCHHHHHHcCCchHHHHHHHHHHHHHHhcC
Q 021493 151 LLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRAKYITGTVDVLQSKHS 228 (311)
Q Consensus 151 Li~~IlsQq~~i~~a~~~~~~L~~~G~~~~~~~~~~~~~FPtpe~La~~~~e~Lr~~Glg~RA~~I~~~A~~i~~~~~ 228 (311)
.+.|.++.-+....+.+--..+.+ +++ +.+-|.+++.+.||.+|+ |..=|+++-+.+..+++
T Consensus 5 Wf~FFl~aGv~~~~c~rYA~~F~~--~ri------------~e~mL~Dl~~~~Lr~LGi--~eGDIIrVmk~l~~k~~ 66 (72)
T 3idw_A 5 WFEFFLNCGVDVSNCQRYTINFDR--EQL------------TEDMMPDINNSMLRTLGL--REGDIVRVMKHLDKKFG 66 (72)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH--TTC------------CGGGGGGCCHHHHHHTTC--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHH--ccC------------CHHHHhhCCHHHHHHcCC--chhhHHHHHHHHHHHhC
Confidence 355667777777776665554431 111 567888999999999999 57888888888877664
No 126
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=20.73 E-value=1.5e+02 Score=22.56 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=22.6
Q ss_pred CHHHHhcCCHHHHHHcCCc---hHHHHHHHHH
Q 021493 192 SLERLSLVSEVELRNAGFG---YRAKYITGTV 220 (311)
Q Consensus 192 tpe~La~~~~e~Lr~~Glg---~RA~~I~~~A 220 (311)
+++++..+++++|+..|+. .|-|.+..+.
T Consensus 54 ~~~~l~~LTdedL~~~GVta~GARrKiL~aI~ 85 (101)
T 2es6_A 54 PWIELIYLDDETLEKKGVLALGARRKLLKAFG 85 (101)
T ss_dssp CHHHHTTCCHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred CHHHHHhcCHHHHHHcCCccHhHHHHHHHHHH
Confidence 8899999999999999985 3655555443
Done!