RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021493
(311 letters)
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex,
separation-OF-function helix-hairpin-helix, DNA repair;
HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A*
1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A*
1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A
1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Length = 360
Score = 243 bits (622), Expect = 4e-79
Identities = 104/316 (32%), Positives = 156/316 (49%), Gaps = 14/316 (4%)
Query: 6 NSPSPLKRPRLTPQPPPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKKT 65
+S P P P + P+ W + +SEL L L P+GQ+FRW++
Sbjct: 9 HSQDPNSMPARALLPRRMGHRT---LASTPALWASIPCPRSELRLDLVLPSGQSFRWREQ 65
Query: 66 GPLQYTGPIGPHLISLKHLQNGDVCYHIHT-----SPSEPAAKSALLDFLNMGISLGELW 120
P ++G + + +L + C S P A+ + + ++L +L+
Sbjct: 66 SPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLY 125
Query: 121 EGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLAS-LGSHL 179
+ + D F E+A+ G R+LRQDP+ECL F+CSSNNNIARIT MV+ L G L
Sbjct: 126 HHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRL 185
Query: 180 GNVEGFEFHEFPSLERLSLVS-EVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLR 238
++ +H FPSL+ L+ E LR G GYRA+Y++ + + + GG WL LR
Sbjct: 186 IQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQ-GGLAWLQQLR 244
Query: 239 KLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVR-- 296
+ +EA ALC LPGVG VA I L +LD+ A+PV+ H+W IA R +
Sbjct: 245 ESSYEEAHKALCILPGVGTCVADKICLMALDKPQAVPVNVHMWHIAQRDYSWHPTTSQAK 304
Query: 297 -LTPKLCSRVAEAFCE 311
+P+ + F
Sbjct: 305 GPSPQTNKELGNFFRS 320
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG,
glycosylase, cytosine, hydrolase,lyase/DNA complex; HET:
8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A*
3f10_A* 3f0z_A
Length = 290
Score = 230 bits (588), Expect = 8e-75
Identities = 71/246 (28%), Positives = 117/246 (47%), Gaps = 9/246 (3%)
Query: 46 SELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSA 105
L F GQ FRW + Y G ++ ++ + V Y+I +E K+
Sbjct: 19 ENFELKDIFDCGQCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNI----NEEEFKNV 74
Query: 106 LLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARI 165
++ ++ GE+ + S D + + G R+LRQDP E LL F+ S+NN I I
Sbjct: 75 WSEYFDLYRDYGEIKKELSR-DPLLKKSVDFGEGIRILRQDPFEILLSFIISANNRIPMI 133
Query: 166 TKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYRAKYITGTVDVLQS 225
K ++ ++ +G ++ FP++++L +E + G+RAKY+ TVD + +
Sbjct: 134 KKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFEECTAGFRAKYLKDTVDRIYN 193
Query: 226 KHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIAT 285
G L ++ L+ E + L GVGP+VA CI LFS+ ++ A PVDT V K
Sbjct: 194 ----GELNLEYIKSLNDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMM 249
Query: 286 RYLLPE 291
+
Sbjct: 250 SLYVAP 255
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair,
N1-methyladenine, N3-methylcytosine, hyperthermophiles,
hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus}
PDB: 2jhj_A
Length = 295
Score = 94.1 bits (234), Expect = 2e-22
Identities = 26/151 (17%), Positives = 49/151 (32%), Gaps = 15/151 (9%)
Query: 123 FSASDCRFAELAKYLAGARV---LRQDPVECLLQFLCSSNNNIARITKMVD-FLASLGSH 178
F D + L G + E + + + + K+ + G
Sbjct: 91 FMDGDEKLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDE 150
Query: 179 LGNVEGFEFHEFPSLERLSLVSEVELRNAGFGYR-AKYITGTVDVLQSKHSGGAEWLLSL 237
+ G +F+ FP+ E + LR G R A+ I + L
Sbjct: 151 V-EWNGLKFYGFPTQEAILKAGVEGLRECGLSRRKAELIVEIAKEENLE---------EL 200
Query: 238 RKLDLQEAIDALCTLPGVGPKVAACIALFSL 268
++ +EA + L + G+G A + +L
Sbjct: 201 KEWGEEEAYEYLTSFKGIGRWTAELVLSIAL 231
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix,
8-oxoguanine, 8-OXOG, DNA damage, DNA repair,
glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Length = 207
Score = 65.0 bits (158), Expect = 1e-12
Identities = 26/181 (14%), Positives = 59/181 (32%), Gaps = 24/181 (13%)
Query: 133 LAKYLAGARVLRQDPVECLLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPS 192
+ ++ + L L ++N++ + ++ L + E
Sbjct: 19 VDEFRLNNLSNEEVWFRELTLCLLTANSSFISAYQALNCLGQKIYYANEEE--------- 69
Query: 193 LERLSLVSEVELRNAGFGY---RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDAL 249
+ + L++ + + +AKYI + + + + L D Q A + L
Sbjct: 70 IRNI-------LKSCKYRFYNLKAKYIIMAREKVYGRLKE---EIKPLADEDQQLARERL 119
Query: 250 CTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRY-LLPELAGVRLTPKLCSRVAEA 308
+ G+G + A+ AI +D H+ R + E +L+ L
Sbjct: 120 LNIKGIGMQEASHFLRNVGYFDLAI-IDRHIIDFMRRIGAIGETNVKQLSKSLYISFENI 178
Query: 309 F 309
Sbjct: 179 L 179
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision
repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori}
SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Length = 218
Score = 63.6 bits (155), Expect = 4e-12
Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 15/102 (14%)
Query: 191 PSLERLSLVSEVEL----RNAGFGYR--AKYITGTVDVLQSKHSGGAEWLLSLRKLDLQE 244
+L++++ + +L R +GF Y AK + + +
Sbjct: 67 INLKKIAYIEFSKLAECVRPSGF-YNQKAKRLIDLSGNILKDFQS-------FENFKQEV 118
Query: 245 AIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATR 286
+ L G+G + A I ++ + + VD + + +
Sbjct: 119 TREWLLDQKGIGKESADAILCYACAK-EVMVVDKYSYLFLKK 159
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base
excision, methylation, ALK hydrolase; 1.80A {Escherichia
coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A*
3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A*
3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Length = 282
Score = 58.3 bits (141), Expect = 5e-10
Identities = 36/188 (19%), Positives = 62/188 (32%), Gaps = 20/188 (10%)
Query: 125 ASDCRFAELAKYLAGARV-LRQDPVECLLQFLCSSNNNIARITKMVD-FLASLGSHLGNV 182
+ L G R+ D E ++ + ++A K+ G L
Sbjct: 90 IVNGALGRLGAARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLD-- 147
Query: 183 EGFEFHEFPSLERLSLVSEVELRNAGF-GYRAKYITGTVDVLQSKHSGGAEWLLSLRKLD 241
+ E+ FP+ +RL+ L+ G RA+ + + L D
Sbjct: 148 DFPEYICFPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGT------LPMTIPGD 201
Query: 242 LQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPKL 301
+++A+ L T PG+G A AL D ++ K +TP
Sbjct: 202 VEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPG---------MTPAQ 252
Query: 302 CSRVAEAF 309
R AE +
Sbjct: 253 IRRYAERW 260
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA
repair, 8-oxoguanine, base EX repair, PSI-2, protein
structure initiative; 1.50A {Thermotoga maritima}
Length = 219
Score = 48.1 bits (114), Expect = 8e-07
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 204 LRNAGFGY---RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCT-LPGVGPKV 259
LR G Y RA++I +L L +L K D ++ + L G+G K
Sbjct: 91 LREVGHRYPQKRAEFIVENRKLLGK--------LKNLVKGDPFQSREFLVRNAKGIGWKE 142
Query: 260 AACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPK 300
A+ + + AI +D HV ++ R+ L + + K
Sbjct: 143 ASHFLRNTGVEDLAI-LDKHVLRLMKRHGLIQEIPKGWSKK 182
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA
repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Length = 225
Score = 46.9 bits (112), Expect = 2e-06
Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 5/91 (5%)
Query: 188 HEFPSLERLSLVSEVELRNAGF-GYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAI 246
L VS +LR G + + + S G L + I
Sbjct: 90 PGGVVPAALLKVSGDDLRGVGLSWAKVRTVQAAAAAAVS----GQIDFAHLSGQPDELVI 145
Query: 247 DALCTLPGVGPKVAACIALFSLDQHHAIPVD 277
L LPG+G A LF+L +
Sbjct: 146 AELVQLPGIGRWTAEMFLLFALARPDVFSSG 176
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair,
helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF);
HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Length = 228
Score = 47.0 bits (112), Expect = 2e-06
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 189 EFPSLERLSLVSEVELRNAGFGYR-AKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAID 247
+FP+ E + + +R GF R + + S E +L +E I+
Sbjct: 83 QFPTPEEIRDMDFEIMRACGFSARKIDSLKSIAEATISGLIPTKE---EAERLSNEELIE 139
Query: 248 ALCTLPGVGPKVAACIALFSL 268
L + G+G + +FSL
Sbjct: 140 RLTQIKGIGRWTVEMLLIFSL 160
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc
genomics, PSI-2, protein structure initiative, joint
center structural genomics; 2.55A {Bacillus halodurans}
Length = 233
Score = 46.6 bits (111), Expect = 3e-06
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 189 EFPSLERLSLVSEVELRNAGFGYR-AKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAID 247
E+L VS+ LR AG R +YI + G L + I+
Sbjct: 83 ALEKPEQLYRVSDEALRQAGVSKRKIEYIRH----VCEHVESGRLDFTELEGAEATTVIE 138
Query: 248 ALCTLPGVGPKVAACIALFSLDQHHAIPVD 277
L + G+G A +FSL + + V
Sbjct: 139 KLTAIKGIGQWTAEMFMMFSLGRLDVLSVG 168
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster,
iron-sulfur cluster, hydrolase/DNA complex; HET: PED;
1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1
PDB: 1orp_A* 1p59_A*
Length = 226
Score = 43.4 bits (103), Expect = 3e-05
Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 25/109 (22%)
Query: 187 FHEFPSLERLSLVSEVEL----RNAGFGYR--AKYITGTVDVLQSKHSGGAEWLLSLRKL 240
F ++ + V EL R+ G YR A+ I +L K++G
Sbjct: 59 FEKYRTPHDYIAVPLEELEQDIRSIGL-YRNKARNIQKLCAMLIDKYNG----------- 106
Query: 241 DLQEAIDALCTLPGVGPKVAACIALFSLDQ---HHAIPVDTHVWKIATR 286
++ D L LPGVG K A + + AI VDTHV +++ R
Sbjct: 107 EVPRDRDELMKLPGVGRKTANVV----VSVAFGVPAIAVDTHVERVSKR 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 8e-05
Identities = 49/288 (17%), Positives = 82/288 (28%), Gaps = 72/288 (25%)
Query: 64 KTGPLQYT-GPIGPHLISLKHLQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEG 122
+TG QY I + N D C + P +K + + ++
Sbjct: 10 ETGEHQYQYKDILSVFED-AFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 123 FSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSS--NNNIARITKMVDFLASLGSHLG 180
F + E+ + VLR + +FL S ++
Sbjct: 68 FWTLLSKQEEMVQKFVEE-VLRIN-----YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 181 NVEGFEFHEFPSLERLSLVSEV-----ELRN---------AGFGYRAKYITGTV---DVL 223
+ + F + ++ RL ++ ELR G G K T DV
Sbjct: 122 DNQVFAKY---NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG---K----TWVALDVC 171
Query: 224 QS-----KHSGGAEWLLSLRKL----DLQEAIDALCTLPGVGPKVAACIALFSLDQHHAI 274
S K WL +L+ + E + L + P + D I
Sbjct: 172 LSYKVQCKMDFKIFWL-NLKNCNSPETVLEMLQKLLYQ--IDPNWTS-----RSDHSSNI 223
Query: 275 PVDTHVWKIATRYLLPE---------LAGVRLTPKLCSRVAEAF---C 310
+ H + R LL L V+ ++ AF C
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-----NAKAWNAFNLSC 266
Score = 38.7 bits (89), Expect = 0.002
Identities = 25/151 (16%), Positives = 46/151 (30%), Gaps = 41/151 (27%)
Query: 69 QYTGPIG--PHLISLKHLQNGDVCY---HI--HTSPSEPAAKSALLD--FLNMG------ 113
Y P + +L Y HI H E + L FL+
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQ----YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 114 ISLGELWEGFSASDCRFAELAKYLAGARVLRQDPVECLLQFLCSSNNNIARITK-MVDFL 172
W + +L Y ++C ++ R+ ++DFL
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYK---------------PYICDNDPKYERLVNAILDFL 552
Query: 173 ASLGSHLGNVEGFEFHEFPSLERLSLVSEVE 203
+ +L ++ L R++L++E E
Sbjct: 553 PKIEENLIC------SKYTDLLRIALMAEDE 577
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia
coli} SCOP: a.96.1.1
Length = 211
Score = 41.7 bits (99), Expect = 8e-05
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 25/109 (22%)
Query: 187 FHEFPSLERLSLVSEVELRNA----GFGYR--AKYITGTVDVLQSKHSGGAEWLLSLRKL 240
+ + + + ++ G Y A+ I T +L +H+G
Sbjct: 55 YPVANTPAAMLELGVEGVKTYIKTIGL-YNSKAENIIKTCRILLEQHNG----------- 102
Query: 241 DLQEAIDALCTLPGVGPKVAACIALFSLDQ---HHAIPVDTHVWKIATR 286
++ E AL LPGVG K A + L+ I VDTH++++ R
Sbjct: 103 EVPEDRAALEALPGVGRKTANVV----LNTAFGWPTIAVDTHIFRVCNR 147
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase,
DNA mismatch, methylation; 2.00A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Length = 221
Score = 40.6 bits (96), Expect = 3e-04
Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 17/104 (16%)
Query: 190 FPSLERLSLVSEVELRN--AGFGY---RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQE 244
+ E + + E+ G RA+ + V+ + + G +
Sbjct: 64 YKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGG-----------RVPR 112
Query: 245 AIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYL 288
A+ LPGVG A + + + A+ VD + ++ RY
Sbjct: 113 NRKAILDLPGVGKYTCAAVMCLAFGKKAAM-VDANFVRVINRYF 155
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A
{Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A
1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A*
1wef_A* 1kg7_A 1kqj_A
Length = 225
Score = 39.8 bits (94), Expect = 4e-04
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 190 FPSLERLSLVSEVELRN--AGFGY--RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEA 245
FP++ L+ E+ + G GY RA+ + + + H G E
Sbjct: 59 FPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGG-----------KFPET 107
Query: 246 IDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYL 288
+ + LPGVG A I SL +H I +D +V ++ R
Sbjct: 108 FEEVAALPGVGRSTAGAILSLSLGKHFPI-LDGNVKRVLARCY 149
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix,
8-oxoguanine, 8-OXOG, DNA damage, DNA repair,
glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB:
3knt_A*
Length = 214
Score = 39.3 bits (91), Expect = 7e-04
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 201 EVELRNAGFGY---RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALC-TLPGVG 256
E +L+N G + RA+YI K + + + A + L + G+G
Sbjct: 82 EEKLKNLGHRFYRKRAEYIVLARRFKNIKDIVESF-------ENEKVAREFLVRNIKGIG 134
Query: 257 PKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPK 300
K A+ AI +D H+ + + L+ +
Sbjct: 135 YKEASHFLRNVGYDDVAI-IDRHILRELYENNYIDEIPKTLSRR 177
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger,
toprim, walker B ATP binding motif; 2.50A {Deinococcus
radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Length = 228
Score = 38.3 bits (90), Expect = 0.001
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 242 LQEAIDALCTLPGVGPKVAACIALFSLDQ 270
L I L LPG+GPK A +A +Q
Sbjct: 7 LVSLIRELSRLPGIGPKSAQRLAFHLFEQ 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.001
Identities = 59/360 (16%), Positives = 107/360 (29%), Gaps = 131/360 (36%)
Query: 15 RLTPQPPPTPPNPQTL---------TTNKP-SKWTPLNLTQS----ELSLPLTFPTGQTF 60
+L + T + L +P K + L ++ L F GQ
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-GQ-- 163
Query: 61 RWKKTGP-------LQ-----YTGPIGPHLISL--KHLQNGDVCYHIHTSPSEPAAKSAL 106
G L+ Y +G LI + L + A+
Sbjct: 164 -----GNTDDYFEELRDLYQTYHVLVGD-LIKFSAETLSE--------LIRTTLDAEK-- 207
Query: 107 LDFLNMGISLGELW---------EGFSASDCRFA-------ELAKYLAGARVLRQDPVEC 150
G+++ E W + + S + +LA Y+ A++L P E
Sbjct: 208 --VFTQGLNILE-WLENPSNTPDKDYLLS-IPISCPLIGVIQLAHYVVTAKLLGFTPGE- 262
Query: 151 LLQFLCSSNNNIARITKMVDFLASLGSHLGNVEGFEFHEFPSLERLSLVSEVELRNAGF- 209
L +L + + + V +A S F + ++++ F
Sbjct: 263 LRSYLKGATGHSQGLVTAV-AIAETDS------WESFFVS-VRKAITVL---------FF 305
Query: 210 -GYRAKYITGTV----DVLQS--KHSGGAE-WLLSLRKLD---LQEAIDALCT-LPGVGP 257
G R +L+ +++ G +LS+ L +Q+ ++ + LP G
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA-GK 364
Query: 258 KVAACIALF-------------SL----------------DQHHAIPVDTHVWKIATRYL 288
+V I+L SL DQ IP K + R+L
Sbjct: 365 QVE--ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR-IPFSERKLKFSNRFL 421
Score = 38.9 bits (90), Expect = 0.002
Identities = 54/307 (17%), Positives = 89/307 (28%), Gaps = 95/307 (30%)
Query: 40 PLNLTQSELSLPLTFPTGQTF-------RWKKTGPLQYTGPIG-------PHLIS--LKH 83
PL L+ L L PT F ++ K P G L+ L +
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 84 LQNGDVCYHIHTSPSEPAAKSALLDFLNMGISLGELWEGF-----------------SAS 126
+ +S EP+ LN + L E + +
Sbjct: 68 V----------SSLVEPSKVGQFDQVLN--LCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 127 DCRFAELAK-YLAGARVLRQDPVE-----CLLQFLCSSNNNIARITKMVDFLASLGSHLG 180
+ EL K Y+ AR++ + P + L + + A++ + F G G
Sbjct: 116 LVKTKELIKNYIT-ARIMAKRPFDKKSNSALFR---AVGEGNAQL--VAIF----GGQ-G 164
Query: 181 NVEGFEFHEF--------PSLERLSLVSEVELRN--AGFGYRAKYITGTVDVLQSKHSGG 230
N + + F E + L S L K T +++L+
Sbjct: 165 NTDDY-FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE------ 217
Query: 231 AEWLLSLRKLDLQEAIDALCTLPGVGPKVAAC--IALFSLDQHHAIPVDTHVWKIATRYL 288
W L D L ++P +C I + L H+ V + L
Sbjct: 218 --W---LENPSNTPDKDYLLSIP------ISCPLIGVIQL-AHYV--VTAKLLGFTPGEL 263
Query: 289 LPELAGV 295
L G
Sbjct: 264 RSYLKGA 270
Score = 37.3 bits (86), Expect = 0.006
Identities = 48/258 (18%), Positives = 88/258 (34%), Gaps = 86/258 (33%)
Query: 2 QSLKN---SPSP------LKRPRLTPQPPPT----PPNPQ---TLTTNKPSKW----TPL 41
SL+N PSP L + ++ T P Q +L N P
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV-NGAKNLVVSGPPQ 384
Query: 42 NLTQSELSL-PLTFPTG--QT---FRWKK-TGPLQYTGPIG-PHLISLKHLQNGDVCYHI 93
+L L+L P+G Q+ F +K ++ P+ P +H
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF-LPVASP--------------FH- 428
Query: 94 HTSPS-EPAAKSALLDFLNMGISL--GEL----WEGFSASDCRFAELAKYLAG--ARVLR 144
S PA+ D + +S ++ ++ F SD R L+ ++ +
Sbjct: 429 --SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR--VLSGSISERIVDCII 484
Query: 145 QDPV--ECLLQFLCSSNNNIARITKMVDF-------LASLGSHLGNVEGFEFHEFPSLER 195
+ PV E QF + T ++DF L L N +G + R
Sbjct: 485 RLPVKWETTTQF---------KATHILDFGPGGASGLGVLTHR--NKDG-------TGVR 526
Query: 196 LSLVSEVEL-RNAGFGYR 212
+ + +++ + +G++
Sbjct: 527 VIVAGTLDINPDDDYGFK 544
Score = 30.4 bits (68), Expect = 0.97
Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 40/122 (32%)
Query: 47 ELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQ--NGDVCYHIHTSPSE----- 99
L++ G+ R + + + + L + K + N + S
Sbjct: 1671 NLTIHFGGEKGKRIR-ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 100 ----PA----AKSALLDFLNMGI----------SLGELWEGFSASDCRFAELAKYLAGAR 141
PA K+A D + G+ SLGE ++A LA + A
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE----YAA-------LA---SLAD 1775
Query: 142 VL 143
V+
Sbjct: 1776 VM 1777
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA
glycosylase, transition state analog, DNA repair; HET:
NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A*
1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Length = 369
Score = 38.1 bits (89), Expect = 0.002
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 16/103 (15%)
Query: 190 FPSLERLSLVSEVELRNA--GFGY--RAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEA 245
FP+LE L+ E E+ A G GY R + + V +++++ G + +
Sbjct: 68 FPTLEALADADEDEVLKAWEGLGYYSRVRNLHAAVKEVKTRYGG-----------KVPDD 116
Query: 246 IDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYL 288
D L GVGP + + VD +V ++ +R
Sbjct: 117 PDEFSRLKGVGPYTVGAVLSLAYGVPEPA-VDGNVMRVLSRLF 158
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family,
hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo
sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A*
1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Length = 161
Score = 34.0 bits (78), Expect = 0.029
Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 26/107 (24%)
Query: 187 FHEFPSLERLSLVSEVELRN--AGFGY---RAKYITGTVDVLQSKHSGGAEWLLSLRKLD 241
++PS E ++ G RAK I K S
Sbjct: 57 LEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIV--------KFSDEY---------- 98
Query: 242 LQEAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYL 288
L + L G+G +F +++ + + H +Y
Sbjct: 99 LTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLN---KYH 142
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices,
helix-hairpin-helix motif, iron-sulfur cluste hydrolase;
2.30A {Homo sapiens}
Length = 287
Score = 32.3 bits (74), Expect = 0.15
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 251 TLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIATRYL 288
LPGVG A IA + Q + VD +V ++ R
Sbjct: 133 LLPGVGRYTAGAIASIAFGQATGV-VDGNVARVLCRVR 169
>2duy_A Competence protein comea-related protein; helix-hairpin-helix,
structural genomics, NPPSFA; 1.75A {Thermus
thermophilus} SCOP: a.60.2.7
Length = 75
Score = 29.2 bits (66), Expect = 0.29
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 239 KLDLQEA-IDALCTLPGVGPKVAACI 263
+ L EA ++ L LPG+GP +A I
Sbjct: 18 PVSLNEASLEELMALPGIGPVLARRI 43
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 213
Score = 30.0 bits (66), Expect = 0.70
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 7 SPSPLKRPRLTPQPPPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQT 59
+ K P + PP PP P+ + + + L+L + ++ T
Sbjct: 25 GATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQ 77
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A
{Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2
PDB: 1v9p_A*
Length = 667
Score = 30.6 bits (70), Expect = 0.84
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 242 LQEA-IDALCTLPGVGPKVAACIALFSLDQHH 272
L EA ++ L + VG A I D
Sbjct: 533 LLEASLEELIEVEEVGELTARAILETLKDPAF 564
>2kps_A Uncharacterized protein; beta strand, figure eight, figure 8,
structural genomics, PSI-2, protein structure
initiative; NMR {Desulfitobacterium hafniense Y51} PDB:
2l3u_A
Length = 98
Score = 28.3 bits (63), Expect = 0.99
Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 202 VELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDA 248
+ LRN + V V E L +L K + IDA
Sbjct: 9 IVLRNLPEDLVLEKPLPEVSV---TIRAYPEILNNLTKEQISLWIDA 52
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix
turn helix motif, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.60.2.7
Length = 98
Score = 28.2 bits (63), Expect = 1.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 247 DALCTLPGVGPKVAACI 263
L +L +GPK A I
Sbjct: 40 RDLRSLQRIGPKKAQLI 56
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC
AMP; 2.30A {Escherichia coli}
Length = 671
Score = 29.8 bits (68), Expect = 1.3
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 231 AEWLLSLRKLDLQEAIDALCTLPGVGPKVAACIALFSLDQHH 272
A + +L L +I+ L +P VG VA+ + F ++ +
Sbjct: 529 AAYFGTLEAL-EAASIEELQKVPDVGIVVASHVHNFFAEESN 569
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 29.5 bits (65), Expect = 1.6
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 17 TPQPPPTPPNPQTLTTNKPSKWTP 40
TP+ PP+ + L P + P
Sbjct: 629 TPELPPSSAHRSHLKHRHPHHYKP 652
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 29.4 bits (66), Expect = 1.6
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 8 PSPLKRPRLTPQPPPTPPNPQTLTTNKPS---KWTP 40
S ++ + P P+PP+ ++ S T
Sbjct: 280 YSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITK 315
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis,
oxygen-evolving, tetra- manganese, membrane; HET: CL1
PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus
elongatus}
Length = 134
Score = 28.1 bits (62), Expect = 1.8
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 239 KLDLQEA-IDALCTLPGVGPKVAACI 263
K+DL I A G+ P +A I
Sbjct: 54 KIDLNNTNIAAFIQYRGLYPTLAKLI 79
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein
complex, transmembrane alpha-helix, E transport,
photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT
HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus}
PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U*
3a0b_U* 3a0h_U*
Length = 97
Score = 27.6 bits (61), Expect = 2.1
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 239 KLDLQEA-IDALCTLPGVGPKVAACI 263
K+DL I A G+ P +A I
Sbjct: 17 KIDLNNTNIAAFIQYRGLYPTLAKLI 42
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex,
octameric RUVA, AAA-ATPase domain, complex with
nucleotide, hydrolase; HET: ANP; 3.30A {Thermus
thermophilus} SCOP: a.60.2.1 b.40.4.2
Length = 191
Score = 27.9 bits (63), Expect = 3.0
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 5/25 (20%)
Query: 241 DLQEAI-----DALCTLPGVGPKVA 260
L A+ L + GVG ++A
Sbjct: 96 LLARALLEGDARLLTSASGVGRRLA 120
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 28.4 bits (64), Expect = 3.4
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 152 LQFLCSSNNNIARITKMVDFLASL------GSHLGNVEGFEFHEFPSLERLSL 198
LQ L + +++ + + L++L + N+ FPSL LS+
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 28.6 bits (63), Expect = 3.6
Identities = 7/34 (20%), Positives = 9/34 (26%)
Query: 7 SPSPLKRPRLTPQPPPTPPNPQTLTTNKPSKWTP 40
+ P P QT T K +K
Sbjct: 695 DCVQVATKGAATPKPVPEPEKQTDHTVKGTKHHH 728
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent
protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta
specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A*
Length = 380
Score = 28.3 bits (63), Expect = 3.8
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 10/42 (23%)
Query: 151 LLQFLCSSNNNIARITKMVD-----FLASLGSHLGNVEGFEF 187
L+++LC + +T +V + S+ N +G+E
Sbjct: 84 LIEYLCKNFGTDPEVTDLVQSTRIHIMPSM-----NPDGYEK 120
>3dcp_A Histidinol-phosphatase; HISK, histidine biosynthesis, NESG, LMR141,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Listeria monocytogenes str}
Length = 283
Score = 28.0 bits (62), Expect = 4.0
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 91 YHIHTSPSEPAAKSALLDFLNMGISLG 117
H HT + + + I L
Sbjct: 5 GHTHTEFCPHGTHDDVEEMVLKAIELD 31
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Length = 615
Score = 28.3 bits (64), Expect = 4.1
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 242 LQEA-IDALCTLPGVGPKVAACIALFSLDQHH 272
+ A D L + GVGP +AA + + H
Sbjct: 555 IAAASTDQLAAVEGVGPTIAAAVTEWFAVDWH 586
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA
recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1
a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Length = 203
Score = 27.7 bits (62), Expect = 4.4
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 5/25 (20%)
Query: 241 DLQEAI-----DALCTLPGVGPKVA 260
A+ AL LPG+G K A
Sbjct: 97 QFVNAVEREEVGALVKLPGIGKKTA 121
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination,
branch migration, DNA BIND oligomerization, acidic PIN;
2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A
2h5x_A 1bvs_A
Length = 212
Score = 27.6 bits (62), Expect = 4.5
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 241 DLQEAI-----DALCTLPGVGPKVA 260
L++ + AL +PG+G + A
Sbjct: 112 ALRQVLADGNVAALTRVPGIGKRGA 136
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 27.5 bits (60), Expect = 4.6
Identities = 6/30 (20%), Positives = 7/30 (23%)
Query: 8 PSPLKRPRLTPQPPPTPPNPQTLTTNKPSK 37
S + LTP P T
Sbjct: 190 ASTMPTVTLTPTPTATTTTTIPTAVPTTES 219
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 5.9
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 8/32 (25%)
Query: 2 QSLKNSPSPLKRPRLTPQPPPTPPNPQTLTTN 33
Q+LK + LK + P L
Sbjct: 20 QALKKLQASLK-----LYADDSAP---ALAIK 43
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold,
C-terminal, A transthyretin-like domain, hydrolase; HET:
NAG GEM; 2.70A {Drosophila melanogaster}
Length = 435
Score = 27.6 bits (61), Expect = 6.1
Identities = 6/42 (14%), Positives = 20/42 (47%), Gaps = 10/42 (23%)
Query: 151 LLQFLCSSNNNIARITKMVD-----FLASLGSHLGNVEGFEF 187
+ Q+L ++ I+ + ++V+ + ++ N +G+
Sbjct: 114 MAQYLLGNHERISDLGQLVNSTDIYLVPTM-----NPDGYAL 150
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative,
southeast collaboratory for structural genomics; 2.26A
{Pyrococcus furiosus} SCOP: a.211.1.1
Length = 184
Score = 26.6 bits (58), Expect = 7.6
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 12/68 (17%)
Query: 87 GDV-CYHIHTSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQ 145
D+ E A AL D L EL+E +S + +L K
Sbjct: 83 TDLPLSAQKYLNKEEAEAKALKDVLPE---YTELFEEYSKALTLEGQLVKIA-------- 131
Query: 146 DPVECLLQ 153
D ++ ++Q
Sbjct: 132 DKLDMIIQ 139
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 27.1 bits (60), Expect = 8.2
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 187 FHEFPSLERLSLVSEVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKL--DLQE 244
H + + SLV E G I T D+ + ++ + D++
Sbjct: 34 VHGWGGSQHHSLVRAREAVGLG------CICMTFDLRGHEGYASMRQSVTRAQNLDDIKA 87
Query: 245 AIDALCTLPGVGPK 258
A D L +LP V
Sbjct: 88 AYDQLASLPYVDAH 101
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB:
1l8l_A* 1l8o_A
Length = 225
Score = 26.8 bits (60), Expect = 8.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 243 QEAIDALCTLPGVGPKVAA 261
+E ID L + GV V+
Sbjct: 28 EEGIDELAKICGVEDAVSE 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.420
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,812,704
Number of extensions: 280478
Number of successful extensions: 919
Number of sequences better than 10.0: 1
Number of HSP's gapped: 892
Number of HSP's successfully gapped: 79
Length of query: 311
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 218
Effective length of database: 4,105,140
Effective search space: 894920520
Effective search space used: 894920520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)