RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021493
(311 letters)
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 190
Score = 119 bits (298), Expect = 3e-33
Identities = 70/171 (40%), Positives = 94/171 (54%), Gaps = 6/171 (3%)
Query: 146 DPVECLLQFLCSSNNNIARITKMVDFLAS-LGSHLGNVEGFEFHEFPSLERLSLVS-EVE 203
DP+ECL F+CSSNNNIARIT MV+ L G L ++ +H FPSL+ L+ E
Sbjct: 1 DPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAH 60
Query: 204 LRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKVAACI 263
LR G GYRA+Y++ + + + G WL LR+ +EA ALC LPGVG +VA CI
Sbjct: 61 LRKLGLGYRARYVSASARAILEEQGGL-AWLQQLRESSYEEAHKALCILPGVGTQVADCI 119
Query: 264 ALFSLDQHHAIPVDTHVWKIATRYLL---PELAGVRLTPKLCSRVAEAFCE 311
L +LD+ A+PVD H+W IA R +P+ + F
Sbjct: 120 CLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRS 170
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 111 bits (280), Expect = 2e-31
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 35 PSKWTPLNLTQSELSLPLTFPTGQTFRWKKTGPLQYTGPIGPHLISLKHLQNGDVCYHIH 94
P+ W + +SEL L L P+GQ+FRW++ P ++G + + +L + ++
Sbjct: 9 PALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQ-TEEQLHCTVY 67
Query: 95 ------TSPSEPAAKSALLDFLNMGISLGELWEGFSASDCRFAELAKYLAGARVLRQ 145
S P A+ + + ++L +L+ + + D F E+A+ G R+LRQ
Sbjct: 68 RGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQ 124
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II
(gene alkA or aidA) {Escherichia coli [TaxId: 562]}
Length = 183
Score = 70.2 bits (171), Expect = 4e-15
Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 20/174 (11%)
Query: 139 GARVLRQ-DPVECLLQFLCSSNNNIARITKMVD-FLASLGSHLGNVEGFEFHEFPSLERL 196
G R+ D E ++ + ++A K+ G L + E+ FP+ +RL
Sbjct: 5 GLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDD--FPEYICFPTPQRL 62
Query: 197 SLVSEVELRNAGF-GYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGV 255
+ L+ G RA+ + + L D+++A+ L T PG+
Sbjct: 63 AAADPQALKALGMPLKRAEALIHLANAALEG------TLPMTIPGDVEQAMKTLQTFPGI 116
Query: 256 GPKVAACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLTPKLCSRVAEAF 309
G A AL D ++ K +TP R AE +
Sbjct: 117 GRWTANYFALRGWQAKDVFLPDDYLIKQRFP---------GMTPAQIRRYAERW 161
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus
radiodurans [TaxId: 1299]}
Length = 199
Score = 36.0 bits (83), Expect = 0.002
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 242 LQEAIDALCTLPGVGPKVAACIALFSLDQ 270
L I L LPG+GPK A +A +Q
Sbjct: 7 LVSLIRELSRLPGIGPKSAQRLAFHLFEQ 35
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle
domain {Mycobacterium leprae [TaxId: 1769]}
Length = 71
Score = 28.5 bits (64), Expect = 0.21
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 243 QEAIDALCTLPGVGPKVAACIAL 265
+ +L +PG+G + A I L
Sbjct: 40 DSDVASLTRVPGIGRRGAERIVL 62
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle
domain {Escherichia coli [TaxId: 562]}
Length = 78
Score = 28.6 bits (64), Expect = 0.22
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 243 QEAIDALCTLPGVGPKVAACIAL 265
+E + AL LPG+G K A + +
Sbjct: 40 REEVGALVKLPGIGKKTAERLIV 62
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 190
Score = 29.7 bits (67), Expect = 0.27
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 211 YRAKYITGTVDVLQSKHS-GGAEWLLSLRKLD---LQEAI-DALCTLPGVGPKVAACIAL 265
+ +++ H G E +S RKL EAI +AL +L G G KV I +
Sbjct: 79 VEEELRKRGAKIVRQSHILSGLERSIS-RKLGGVSRTEAIAEALRSLFGHGLKVCVEITI 137
Query: 266 FSLDQHHAIPVD 277
+ D IP++
Sbjct: 138 MAADSGA-IPIE 148
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 73
Score = 27.4 bits (61), Expect = 0.56
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 242 LQEAIDALCTLPGVGPKVAACIAL 265
L+ L + GVG ++A IAL
Sbjct: 40 LEGDARLLTSASGVGRRLAERIAL 63
>d1oy2a_ b.55.1.2 (A:) Shc adaptor protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 191
Score = 28.5 bits (63), Expect = 0.77
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 5/99 (5%)
Query: 200 SEVELRNAGFGYRAKYITGTVDVLQSKHSGGAEWLLSLRKLDLQEAIDALCTLPGVGPKV 259
++ G Y +Y+ G V+VLQS + R +EAI +C
Sbjct: 25 PNDKVMGPGVSYLVRYM-GCVEVLQSMRALDFN----TRTQVTREAISLVCEAVPGAKGA 79
Query: 260 AACIALFSLDQHHAIPVDTHVWKIATRYLLPELAGVRLT 298
S + + L + + L
Sbjct: 80 TRRRKPCSRPLSSILGRSNLKFAGMPITLTVSTSSLNLM 118
>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 186
Score = 27.4 bits (61), Expect = 1.5
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 244 EAIDALCTLPGVGPKVAACIALFSLDQHHAIPVDTHVWKIA 284
E + + G KV IA+ + D IPVD V I
Sbjct: 113 EIMAETLRMVSQGFKVCVEIAIMAADAGL-IPVDEEVIAIG 152
>d2i7na1 c.55.1.14 (A:236-381) Pantothenate kinase 1, PANK1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 146
Score = 27.2 bits (60), Expect = 1.7
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 129 RFAELAKYLAGARVLRQDPVECL---LQFLCSSNNN 161
+F E + +A ++ + D ++CL L ++ S N
Sbjct: 110 KFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFN 145
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum
pernix [TaxId: 56636]}
Length = 70
Score = 25.5 bits (56), Expect = 2.3
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 241 DLQEA-IDALCTLPGVGPKVAACIA 264
D++E + L + PG+G + A I
Sbjct: 6 DVREWQLYILQSFPGIGRRTAERIL 30
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3
{Thermus filiformis [TaxId: 276]}
Length = 181
Score = 26.8 bits (58), Expect = 2.4
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 247 DALCTLPGVGPKVAACIALFSLDQHH 272
+ L + VG A I D
Sbjct: 139 EELIEVEEVGELTARAILETLKDPAF 164
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967
{Thermus thermophilus [TaxId: 274]}
Length = 65
Score = 24.7 bits (54), Expect = 3.7
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 239 KLDLQEA-IDALCTLPGVGPKVAACIA 264
+ L EA ++ L LPG+GP +A I
Sbjct: 8 PVSLNEASLEELMALPGIGPVLARRIV 34
>d1cjaa_ d.144.1.3 (A:) Actin-fragmin kinase, catalytic domain
{Physarum polycephalum [TaxId: 5791]}
Length = 342
Score = 26.0 bits (57), Expect = 6.9
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 21 PPTPPNPQTLTTNKPSKWTPLNLTQSELSLPLTFPTGQTFRWKK 64
P P PQ KPSKW P + +LS +++ WK
Sbjct: 28 PAKPKVPQ----KKPSKWDPPAEFKVDLSTAVSYNDIGDINWKN 67
>d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga
maritima [TaxId: 2336]}
Length = 180
Score = 25.6 bits (55), Expect = 7.8
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 236 SLRKLDLQEAIDALCTLPGVGPKVAACIA 264
S ++DL I GVGP +
Sbjct: 2 SGEEVDLSTDIQ---YAKGVGPNRKKKLK 27
>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL)
{Caenorhabditis elegans [TaxId: 6239]}
Length = 161
Score = 25.2 bits (55), Expect = 8.1
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Query: 195 RLSLVSEVELRNAG--FGYRAKYIT-GTVDVLQSKHSGGAEWLLSLRKLDLQEAI 246
+ L + F R ++ G+V L +G A L +RK+D Q+ I
Sbjct: 46 TIHLFDDERGLQETDNFAVRDGFVYYGSVVKLVDSVTGIALPRLRIRKVDKQQVI 100
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.420
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,161,661
Number of extensions: 52338
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 19
Length of query: 311
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,240,546
Effective search space: 280363396
Effective search space used: 280363396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)