Query 021494
Match_columns 311
No_of_seqs 395 out of 3061
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:24:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03009 TryX_like_TryX_NRX Try 99.9 9.2E-26 2E-30 182.4 13.3 130 91-228 1-131 (131)
2 cd03008 TryX_like_RdCVF Trypar 99.9 9.6E-26 2.1E-30 184.6 11.2 124 101-226 17-142 (146)
3 cd02964 TryX_like_family Trypa 99.9 2E-24 4.4E-29 175.0 12.6 128 92-228 2-132 (132)
4 PF08534 Redoxin: Redoxin; In 99.9 6.9E-22 1.5E-26 162.5 13.0 117 85-213 2-131 (146)
5 KOG2501 Thioredoxin, nucleored 99.9 5.4E-22 1.2E-26 161.2 11.6 121 95-223 19-142 (157)
6 PRK15412 thiol:disulfide inter 99.9 5.3E-21 1.2E-25 163.8 12.2 116 83-213 39-159 (185)
7 PF13905 Thioredoxin_8: Thiore 99.8 1.2E-20 2.5E-25 143.8 11.7 93 109-209 1-95 (95)
8 cd02967 mauD Methylamine utili 99.8 1.5E-20 3.2E-25 148.0 12.3 110 90-213 1-112 (114)
9 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 7E-21 1.5E-25 151.8 10.1 116 85-212 1-124 (124)
10 PRK03147 thiol-disulfide oxido 99.8 7.4E-20 1.6E-24 154.5 14.6 117 85-212 37-154 (173)
11 cd03010 TlpA_like_DsbE TlpA-li 99.8 2.8E-20 6E-25 149.4 11.4 112 88-212 2-116 (127)
12 PRK14018 trifunctional thiored 99.8 7.9E-20 1.7E-24 176.9 15.0 116 85-212 34-155 (521)
13 PLN02412 probable glutathione 99.8 2.7E-20 5.8E-25 156.9 10.3 116 87-213 7-147 (167)
14 PTZ00056 glutathione peroxidas 99.8 5.6E-20 1.2E-24 159.1 12.2 119 84-213 14-161 (199)
15 cd03012 TlpA_like_DipZ_like Tl 99.8 3.9E-20 8.4E-25 148.6 10.2 105 98-213 13-122 (126)
16 PLN02399 phospholipid hydroper 99.8 3.5E-20 7.6E-25 163.3 10.9 120 83-213 73-217 (236)
17 cd02969 PRX_like1 Peroxiredoxi 99.8 1.7E-19 3.6E-24 152.5 14.5 118 86-214 1-127 (171)
18 PRK00522 tpx lipid hydroperoxi 99.8 9.4E-20 2E-24 153.6 12.5 116 85-213 20-147 (167)
19 cd03014 PRX_Atyp2cys Peroxired 99.8 1.6E-19 3.4E-24 148.0 12.3 116 85-213 2-126 (143)
20 PRK09437 bcp thioredoxin-depen 99.8 1.4E-19 3.1E-24 150.2 12.1 116 85-212 6-135 (154)
21 cd03015 PRX_Typ2cys Peroxiredo 99.8 4.3E-19 9.3E-24 150.4 14.9 119 85-213 1-136 (173)
22 TIGR02661 MauD methylamine deh 99.8 2.9E-19 6.4E-24 153.5 14.0 131 84-242 47-180 (189)
23 TIGR00385 dsbE periplasmic pro 99.8 1.1E-19 2.3E-24 154.1 10.6 117 83-213 34-154 (173)
24 cd00340 GSH_Peroxidase Glutath 99.8 4.6E-20 1E-24 153.0 7.5 113 89-213 2-139 (152)
25 cd03018 PRX_AhpE_like Peroxire 99.8 4.1E-19 8.8E-24 146.3 13.0 117 85-213 3-130 (149)
26 cd03017 PRX_BCP Peroxiredoxin 99.8 4.4E-19 9.5E-24 144.5 11.5 113 88-212 2-125 (140)
27 PRK10382 alkyl hydroperoxide r 99.8 7.7E-19 1.7E-23 150.2 13.3 120 84-213 3-135 (187)
28 PTZ00256 glutathione peroxidas 99.8 5.6E-19 1.2E-23 151.0 11.6 117 86-213 17-164 (183)
29 COG1225 Bcp Peroxiredoxin [Pos 99.8 2.2E-18 4.8E-23 141.4 13.3 117 85-213 6-136 (157)
30 TIGR03137 AhpC peroxiredoxin. 99.8 1.8E-18 3.9E-23 148.4 13.1 121 84-213 3-135 (187)
31 PRK13190 putative peroxiredoxi 99.8 2E-18 4.3E-23 149.8 13.0 119 85-213 4-133 (202)
32 cd02966 TlpA_like_family TlpA- 99.8 4.8E-18 1E-22 132.0 11.3 111 91-212 1-113 (116)
33 PRK15000 peroxidase; Provision 99.8 4.8E-18 1E-22 147.1 12.4 120 84-213 3-141 (200)
34 PTZ00137 2-Cys peroxiredoxin; 99.8 6.9E-18 1.5E-22 150.7 13.1 122 83-213 68-204 (261)
35 TIGR02540 gpx7 putative glutat 99.8 2.6E-18 5.7E-23 142.6 9.6 112 91-213 4-136 (153)
36 PRK13599 putative peroxiredoxi 99.8 1E-17 2.2E-22 146.5 13.2 120 84-213 3-135 (215)
37 PTZ00253 tryparedoxin peroxida 99.7 1.8E-17 3.8E-22 143.6 13.6 120 84-213 7-143 (199)
38 cd02971 PRX_family Peroxiredox 99.7 1.5E-17 3.2E-22 135.4 12.1 114 89-213 2-126 (140)
39 cd02968 SCO SCO (an acronym fo 99.7 1.3E-17 2.7E-22 136.2 11.6 116 88-212 1-139 (142)
40 cd03016 PRX_1cys Peroxiredoxin 99.7 3E-17 6.6E-22 142.6 14.3 118 85-213 1-133 (203)
41 PRK13191 putative peroxiredoxi 99.7 2.2E-17 4.7E-22 144.4 13.2 119 84-213 8-140 (215)
42 cd03011 TlpA_like_ScsD_MtbDsbE 99.7 1.5E-17 3.2E-22 132.5 10.1 106 90-212 1-108 (123)
43 cd02970 PRX_like2 Peroxiredoxi 99.7 2.2E-17 4.8E-22 135.6 11.2 114 88-213 1-146 (149)
44 PLN02919 haloacid dehalogenase 99.7 1.8E-17 3.9E-22 174.3 11.8 117 85-212 393-518 (1057)
45 TIGR01626 ytfJ_HI0045 conserve 99.7 5.7E-17 1.2E-21 137.4 12.5 133 84-242 24-181 (184)
46 PRK13189 peroxiredoxin; Provis 99.7 1.1E-16 2.4E-21 140.7 13.1 119 84-213 10-142 (222)
47 PRK13728 conjugal transfer pro 99.7 1.1E-16 2.5E-21 134.8 10.4 96 87-211 53-151 (181)
48 cd02950 TxlA TRX-like protein 99.6 2.8E-15 6.1E-20 122.9 12.6 77 105-212 16-92 (142)
49 COG0450 AhpC Peroxiredoxin [Po 99.6 5.5E-15 1.2E-19 124.1 11.9 120 83-212 3-139 (194)
50 cd02985 TRX_CDSP32 TRX family, 99.6 6.4E-15 1.4E-19 114.1 10.9 74 107-212 13-86 (103)
51 PRK10606 btuE putative glutath 99.6 8.5E-15 1.8E-19 124.7 11.4 82 88-181 4-94 (183)
52 cd02954 DIM1 Dim1 family; Dim1 99.6 2.7E-14 5.8E-19 111.8 10.8 72 108-213 13-84 (114)
53 TIGR02738 TrbB type-F conjugat 99.5 5E-14 1.1E-18 116.6 11.1 86 98-211 44-133 (153)
54 cd03013 PRX5_like Peroxiredoxi 99.5 4.5E-14 9.7E-19 117.5 10.3 117 85-213 1-137 (155)
55 KOG0910 Thioredoxin-like prote 99.5 1.8E-14 3.8E-19 116.4 7.4 70 109-212 61-130 (150)
56 cd02948 TRX_NDPK TRX domain, T 99.5 7.4E-14 1.6E-18 107.9 10.7 71 108-212 16-86 (102)
57 PHA02278 thioredoxin-like prot 99.5 6.4E-14 1.4E-18 108.4 9.9 75 108-212 13-87 (103)
58 cd02999 PDI_a_ERp44_like PDIa 99.5 7.7E-14 1.7E-18 107.5 9.0 69 105-206 14-82 (100)
59 cd02963 TRX_DnaJ TRX domain, D 99.5 8.8E-14 1.9E-18 109.2 8.9 73 107-212 22-94 (111)
60 cd02951 SoxW SoxW family; SoxW 99.5 2.2E-13 4.7E-18 109.1 10.2 86 107-212 11-101 (125)
61 PF02630 SCO1-SenC: SCO1/SenC; 99.5 5E-13 1.1E-17 113.3 12.6 120 85-212 28-170 (174)
62 cd02956 ybbN ybbN protein fami 99.5 5.8E-13 1.3E-17 101.3 11.0 71 108-212 11-81 (96)
63 KOG0907 Thioredoxin [Posttrans 99.5 2.6E-13 5.6E-18 105.3 8.8 71 107-212 19-89 (106)
64 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 1.1E-12 2.5E-17 100.8 9.4 72 107-212 16-87 (101)
65 cd02953 DsbDgamma DsbD gamma f 99.4 1.4E-12 3.1E-17 100.9 9.7 76 108-212 10-89 (104)
66 TIGR02740 TraF-like TraF-like 99.4 7.7E-13 1.7E-17 119.6 9.4 87 101-211 158-244 (271)
67 cd02962 TMX2 TMX2 family; comp 99.4 2.8E-12 6.1E-17 105.9 10.3 91 108-231 46-142 (152)
68 PRK09381 trxA thioredoxin; Pro 99.4 6E-12 1.3E-16 98.1 11.2 70 109-212 21-90 (109)
69 cd02959 ERp19 Endoplasmic reti 99.4 6.8E-13 1.5E-17 105.1 5.9 78 103-212 13-92 (117)
70 COG3118 Thioredoxin domain-con 99.4 2.1E-12 4.6E-17 115.0 9.2 71 108-212 42-112 (304)
71 PF13098 Thioredoxin_2: Thiore 99.4 3.1E-12 6.8E-17 100.0 8.9 95 108-212 4-98 (112)
72 cd03006 PDI_a_EFP1_N PDIa fami 99.4 3.7E-12 8.1E-17 100.1 9.2 71 108-212 28-99 (113)
73 cd02986 DLP Dim1 family, Dim1- 99.4 3.3E-12 7.1E-17 99.4 8.4 71 108-212 13-83 (114)
74 cd03000 PDI_a_TMX3 PDIa family 99.4 1.4E-11 3E-16 95.3 11.9 71 108-209 14-84 (104)
75 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 5.1E-12 1.1E-16 97.6 9.3 72 108-212 18-89 (104)
76 PRK10996 thioredoxin 2; Provis 99.3 6E-12 1.3E-16 102.8 9.7 71 108-212 51-121 (139)
77 cd02957 Phd_like Phosducin (Ph 99.3 4.8E-12 1E-16 99.6 8.4 69 109-213 24-92 (113)
78 cd03002 PDI_a_MPD1_like PDI fa 99.3 4.7E-12 1E-16 98.5 8.2 70 108-208 17-86 (109)
79 cd02984 TRX_PICOT TRX domain, 99.3 8E-12 1.7E-16 95.1 9.0 70 109-212 14-83 (97)
80 PLN00410 U5 snRNP protein, DIM 99.3 1.9E-11 4.1E-16 99.4 11.6 71 108-212 22-94 (142)
81 cd02994 PDI_a_TMX PDIa family, 99.3 1.8E-11 3.9E-16 94.0 10.7 69 107-209 15-83 (101)
82 cd02989 Phd_like_TxnDC9 Phosdu 99.3 1.8E-11 3.8E-16 96.4 10.7 70 108-212 21-90 (113)
83 cd03005 PDI_a_ERp46 PDIa famil 99.3 6.1E-12 1.3E-16 96.5 7.7 71 111-212 18-88 (102)
84 cd02996 PDI_a_ERp44 PDIa famil 99.3 1.4E-11 3E-16 96.0 9.6 75 108-210 17-91 (108)
85 cd02992 PDI_a_QSOX PDIa family 99.3 2.2E-11 4.8E-16 96.0 10.7 77 109-214 19-95 (114)
86 cd02993 PDI_a_APS_reductase PD 99.3 1.5E-11 3.1E-16 96.2 8.9 72 108-210 20-92 (109)
87 cd02997 PDI_a_PDIR PDIa family 99.3 2.3E-11 4.9E-16 93.6 9.5 75 108-212 16-90 (104)
88 PTZ00051 thioredoxin; Provisio 99.3 2.1E-11 4.6E-16 92.9 8.9 70 108-212 17-86 (98)
89 cd02949 TRX_NTR TRX domain, no 99.3 4.8E-11 1E-15 91.1 10.8 71 108-212 12-82 (97)
90 COG1999 Uncharacterized protei 99.3 1.3E-10 2.9E-15 101.0 14.4 115 91-213 49-187 (207)
91 cd02965 HyaE HyaE family; HyaE 99.3 2.2E-11 4.8E-16 94.7 8.4 71 108-212 26-98 (111)
92 KOG2792 Putative cytochrome C 99.3 1.3E-10 2.8E-15 101.2 14.0 119 91-216 121-261 (280)
93 PF00085 Thioredoxin: Thioredo 99.3 3.5E-11 7.5E-16 92.1 9.4 71 108-212 16-86 (103)
94 TIGR01126 pdi_dom protein disu 99.2 4.8E-11 1E-15 91.2 9.1 71 108-209 12-82 (102)
95 cd03065 PDI_b_Calsequestrin_N 99.2 9.3E-11 2E-15 93.0 10.8 71 110-212 28-102 (120)
96 cd02955 SSP411 TRX domain, SSP 99.2 2E-10 4.4E-15 91.7 12.7 85 105-214 11-98 (124)
97 KOG0908 Thioredoxin-like prote 99.2 3.8E-11 8.2E-16 104.0 7.9 97 103-249 15-111 (288)
98 TIGR01068 thioredoxin thioredo 99.2 9.9E-11 2.1E-15 89.1 9.4 70 109-212 14-83 (101)
99 cd02987 Phd_like_Phd Phosducin 99.2 6.4E-11 1.4E-15 100.4 8.7 68 109-212 83-150 (175)
100 cd02952 TRP14_like Human TRX-r 99.2 4.7E-11 1E-15 94.4 7.1 79 108-212 20-106 (119)
101 PTZ00102 disulphide isomerase; 99.2 1.9E-10 4.1E-15 112.2 12.8 73 107-210 373-445 (477)
102 PTZ00443 Thioredoxin domain-co 99.2 1.4E-10 3.1E-15 101.7 10.6 70 109-212 52-121 (224)
103 PTZ00062 glutaredoxin; Provisi 99.2 7.4E-11 1.6E-15 101.9 8.3 109 110-280 18-134 (204)
104 TIGR02187 GlrX_arch Glutaredox 99.1 1.5E-10 3.2E-15 101.5 8.9 67 107-208 131-197 (215)
105 cd02998 PDI_a_ERp38 PDIa famil 99.1 2E-10 4.4E-15 88.2 8.6 72 109-210 18-89 (105)
106 cd03001 PDI_a_P5 PDIa family, 99.1 2.9E-10 6.4E-15 87.2 9.2 65 109-206 18-82 (103)
107 TIGR01295 PedC_BrcD bacterioci 99.1 5.6E-10 1.2E-14 89.1 10.5 79 108-212 22-105 (122)
108 TIGR02187 GlrX_arch Glutaredox 99.1 8.7E-11 1.9E-15 103.0 6.1 71 108-211 18-91 (215)
109 cd02961 PDI_a_family Protein D 99.1 4.3E-10 9.4E-15 85.1 7.7 74 108-212 14-87 (101)
110 KOG0852 Alkyl hydroperoxide re 99.1 1.7E-09 3.7E-14 88.9 11.5 118 86-213 7-140 (196)
111 cd02960 AGR Anterior Gradient 99.1 3.3E-10 7.1E-15 90.7 7.2 102 106-245 20-124 (130)
112 cd02975 PfPDO_like_N Pyrococcu 99.1 1.7E-09 3.8E-14 85.1 11.0 64 109-206 22-85 (113)
113 cd02988 Phd_like_VIAF Phosduci 99.0 1.1E-09 2.3E-14 94.2 9.7 67 109-213 102-168 (192)
114 KOG0855 Alkyl hydroperoxide re 99.0 9.1E-10 2E-14 89.8 8.2 115 82-208 62-186 (211)
115 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 1.8E-09 4E-14 82.8 9.0 67 109-207 18-84 (104)
116 KOG0191 Thioredoxin/protein di 99.0 9.2E-10 2E-14 104.7 8.6 133 108-284 46-184 (383)
117 TIGR00424 APS_reduc 5'-adenyly 99.0 1.2E-09 2.7E-14 105.0 8.5 70 107-206 369-438 (463)
118 PRK00293 dipZ thiol:disulfide 99.0 9.4E-10 2E-14 109.5 7.5 75 106-210 471-548 (571)
119 TIGR00411 redox_disulf_1 small 99.0 5.7E-09 1.2E-13 76.6 9.7 62 112-209 2-63 (82)
120 cd02947 TRX_family TRX family; 98.9 6.7E-09 1.5E-13 76.9 8.8 68 110-212 11-78 (93)
121 COG0386 BtuE Glutathione perox 98.9 2.2E-08 4.8E-13 81.0 11.7 114 89-213 5-143 (162)
122 cd02958 UAS UAS family; UAS is 98.9 2.1E-08 4.6E-13 78.8 11.6 78 104-212 12-93 (114)
123 TIGR01130 ER_PDI_fam protein d 98.9 1.2E-08 2.6E-13 98.8 11.2 155 4-208 269-431 (462)
124 PTZ00102 disulphide isomerase; 98.8 7.8E-09 1.7E-13 100.9 8.7 72 108-209 48-119 (477)
125 TIGR01130 ER_PDI_fam protein d 98.8 1.3E-08 2.7E-13 98.7 9.8 71 108-209 17-87 (462)
126 PLN02309 5'-adenylylsulfate re 98.8 1.9E-08 4.1E-13 96.9 10.3 68 108-206 364-432 (457)
127 PHA02125 thioredoxin-like prot 98.8 2.2E-08 4.7E-13 72.8 8.1 57 113-212 2-58 (75)
128 KOG0191 Thioredoxin/protein di 98.8 7.3E-08 1.6E-12 91.7 12.5 141 9-208 85-230 (383)
129 cd02973 TRX_GRX_like Thioredox 98.8 3.5E-08 7.6E-13 69.7 7.7 64 112-212 2-65 (67)
130 cd02982 PDI_b'_family Protein 98.8 4.2E-08 9E-13 75.2 8.8 64 109-205 12-77 (103)
131 KOG0190 Protein disulfide isom 98.8 1.3E-08 2.7E-13 97.8 7.0 89 89-209 23-111 (493)
132 TIGR00412 redox_disulf_2 small 98.7 4.2E-08 9.2E-13 71.5 6.8 60 114-212 3-62 (76)
133 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 7.8E-08 1.7E-12 72.3 7.5 71 105-212 8-78 (89)
134 cd03007 PDI_a_ERp29_N PDIa fam 98.6 2.1E-07 4.6E-12 73.2 7.8 67 108-207 17-90 (116)
135 smart00594 UAS UAS domain. 98.6 6.4E-07 1.4E-11 71.4 10.4 73 104-207 22-97 (122)
136 PF13899 Thioredoxin_7: Thiore 98.6 1.3E-07 2.8E-12 69.8 6.0 46 106-161 14-62 (82)
137 KOG1651 Glutathione peroxidase 98.6 7.4E-07 1.6E-11 73.1 10.8 117 88-214 13-153 (171)
138 KOG0854 Alkyl hydroperoxide re 98.6 7.1E-07 1.5E-11 73.7 10.6 118 85-212 8-146 (224)
139 KOG0190 Protein disulfide isom 98.6 4E-07 8.6E-12 87.6 10.5 66 108-206 383-448 (493)
140 PF07649 C1_3: C1-like domain; 98.6 1.8E-08 4E-13 59.7 0.9 29 272-300 1-30 (30)
141 KOG0912 Thiol-disulfide isomer 98.6 3.6E-07 7.8E-12 81.7 9.1 75 109-212 13-87 (375)
142 KOG4277 Uncharacterized conser 98.5 6.1E-08 1.3E-12 86.4 4.1 75 110-215 44-119 (468)
143 COG2077 Tpx Peroxiredoxin [Pos 98.5 1E-06 2.2E-11 71.2 10.3 120 85-217 20-151 (158)
144 PF13728 TraF: F plasmid trans 98.5 5.1E-07 1.1E-11 79.0 8.7 85 104-212 115-199 (215)
145 TIGR02739 TraF type-F conjugat 98.4 2E-06 4.4E-11 76.8 10.3 85 104-212 145-229 (256)
146 KOG2501 Thioredoxin, nucleored 98.4 3.2E-07 7E-12 75.1 4.6 51 1-55 92-142 (157)
147 PF00255 GSHPx: Glutathione pe 98.3 4.5E-06 9.7E-11 64.8 9.1 60 91-161 3-63 (108)
148 PF14595 Thioredoxin_9: Thiore 98.3 1.6E-06 3.4E-11 69.8 6.6 73 106-212 38-113 (129)
149 PRK13703 conjugal pilus assemb 98.3 4.5E-06 9.9E-11 74.2 9.8 83 104-210 138-220 (248)
150 PF03107 C1_2: C1 domain; Int 98.3 4.3E-07 9.2E-12 53.8 2.0 29 272-300 1-30 (30)
151 PF03190 Thioredox_DsbH: Prote 98.2 4E-06 8.6E-11 69.6 7.6 87 101-213 29-119 (163)
152 cd01659 TRX_superfamily Thiore 98.2 6.5E-06 1.4E-10 55.6 7.6 63 113-206 1-63 (69)
153 COG0526 TrxA Thiol-disulfide i 98.2 4.8E-06 1E-10 63.5 7.6 69 103-203 26-96 (127)
154 KOG1731 FAD-dependent sulfhydr 98.2 1.4E-06 3.1E-11 84.0 5.2 69 110-206 58-126 (606)
155 cd03009 TryX_like_TryX_NRX Try 98.1 8.2E-06 1.8E-10 65.4 5.7 57 1-60 75-131 (131)
156 PF00837 T4_deiodinase: Iodoth 98.0 3.5E-05 7.6E-10 67.5 9.0 136 83-238 73-234 (237)
157 COG4232 Thiol:disulfide interc 97.9 1.8E-05 3.9E-10 77.2 6.6 76 108-211 473-549 (569)
158 cd02991 UAS_ETEA UAS family, E 97.9 0.00015 3.3E-09 57.1 10.3 75 106-212 14-95 (116)
159 COG2143 Thioredoxin-related pr 97.9 0.00012 2.5E-09 59.7 9.5 86 106-212 39-131 (182)
160 PRK11509 hydrogenase-1 operon 97.9 8.8E-05 1.9E-09 59.6 8.2 69 111-212 36-106 (132)
161 cd03008 TryX_like_RdCVF Trypar 97.8 2.1E-05 4.5E-10 64.6 4.1 53 2-58 90-142 (146)
162 TIGR02196 GlrX_YruB Glutaredox 97.8 0.00011 2.3E-09 52.0 7.1 55 113-202 2-56 (74)
163 TIGR02200 GlrX_actino Glutared 97.7 0.00018 3.8E-09 51.7 7.6 63 113-212 2-65 (77)
164 PF06110 DUF953: Eukaryotic pr 97.7 0.00017 3.8E-09 56.9 7.6 77 108-210 18-103 (119)
165 cd02964 TryX_like_family Trypa 97.7 8.5E-05 1.8E-09 59.7 5.5 56 2-60 76-132 (132)
166 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00012 2.7E-09 53.5 5.6 60 113-202 1-60 (84)
167 KOG0914 Thioredoxin-like prote 97.6 0.00011 2.5E-09 62.9 5.1 92 108-234 143-241 (265)
168 PRK11657 dsbG disulfide isomer 97.4 0.002 4.3E-08 57.8 11.4 94 107-212 115-235 (251)
169 KOG0911 Glutaredoxin-related p 97.4 0.00011 2.4E-09 63.4 2.4 70 108-212 16-85 (227)
170 PF00462 Glutaredoxin: Glutare 97.3 0.002 4.3E-08 44.2 7.7 59 113-209 1-59 (60)
171 TIGR03143 AhpF_homolog putativ 97.3 0.00093 2E-08 66.8 8.5 70 106-212 473-542 (555)
172 PRK10877 protein disulfide iso 97.3 0.0021 4.6E-08 56.9 9.8 88 108-210 106-214 (232)
173 cd03020 DsbA_DsbC_DsbG DsbA fa 97.2 0.0025 5.4E-08 54.9 9.6 95 102-210 70-184 (197)
174 PRK11200 grxA glutaredoxin 1; 97.2 0.0016 3.5E-08 48.0 7.3 65 113-210 3-69 (85)
175 cd02340 ZZ_NBR1_like Zinc fing 97.1 0.00027 5.8E-09 45.4 1.9 30 273-302 2-32 (43)
176 PF13192 Thioredoxin_3: Thiore 97.0 0.0073 1.6E-07 43.6 8.7 57 117-212 6-62 (76)
177 KOG3425 Uncharacterized conser 96.8 0.0036 7.9E-08 48.8 5.6 71 109-205 25-104 (128)
178 cd02976 NrdH NrdH-redoxin (Nrd 96.7 0.011 2.5E-07 41.2 7.9 55 113-202 2-56 (73)
179 PF05988 DUF899: Bacterial pro 96.7 0.03 6.5E-07 48.3 11.4 111 90-212 47-171 (211)
180 cd02342 ZZ_UBA_plant Zinc fing 96.7 0.001 2.2E-08 42.1 1.6 33 273-305 2-36 (43)
181 PF02114 Phosducin: Phosducin; 96.7 0.0099 2.1E-07 53.7 8.7 69 109-213 146-214 (265)
182 cd02339 ZZ_Mind_bomb Zinc fing 96.6 0.0012 2.7E-08 42.7 1.9 30 273-302 2-33 (45)
183 cd02972 DsbA_family DsbA famil 96.6 0.0074 1.6E-07 44.5 6.5 81 113-204 1-91 (98)
184 cd02343 ZZ_EF Zinc finger, ZZ 96.6 0.001 2.2E-08 43.5 1.3 30 273-302 2-32 (48)
185 cd03019 DsbA_DsbA DsbA family, 96.6 0.021 4.5E-07 47.8 9.6 33 108-140 14-46 (178)
186 cd03419 GRX_GRXh_1_2_like Glut 96.6 0.0056 1.2E-07 44.4 5.4 63 113-210 2-64 (82)
187 PF04592 SelP_N: Selenoprotein 96.4 0.024 5.2E-07 49.6 8.8 114 88-212 9-125 (238)
188 cd02066 GRX_family Glutaredoxi 96.4 0.031 6.7E-07 38.7 8.0 61 113-211 2-62 (72)
189 PF13848 Thioredoxin_6: Thiore 96.2 0.085 1.9E-06 44.1 11.3 67 109-208 94-163 (184)
190 PF09695 YtfJ_HI0045: Bacteria 96.2 0.098 2.1E-06 43.1 11.0 119 101-241 29-158 (160)
191 cd02249 ZZ Zinc finger, ZZ typ 96.1 0.0035 7.6E-08 40.8 1.9 32 272-303 1-33 (46)
192 cd02334 ZZ_dystrophin Zinc fin 96.1 0.004 8.6E-08 41.1 1.9 30 273-302 2-33 (49)
193 TIGR02190 GlrX-dom Glutaredoxi 96.1 0.036 7.9E-07 40.2 7.3 62 110-210 7-68 (79)
194 PF13905 Thioredoxin_8: Thiore 96.1 0.0075 1.6E-07 45.1 3.7 37 1-41 59-95 (95)
195 TIGR02183 GRXA Glutaredoxin, G 96.0 0.021 4.5E-07 42.3 5.8 60 113-202 2-63 (86)
196 cd02344 ZZ_HERC2 Zinc finger, 95.9 0.0048 1E-07 39.9 1.8 30 273-302 2-33 (45)
197 PTZ00062 glutaredoxin; Provisi 95.9 0.11 2.3E-06 45.2 10.7 20 20-43 57-76 (204)
198 PRK15317 alkyl hydroperoxide r 95.7 0.038 8.3E-07 54.7 8.3 62 107-202 114-175 (517)
199 cd03418 GRX_GRXb_1_3_like Glut 95.6 0.068 1.5E-06 37.9 7.1 60 113-210 2-62 (75)
200 COG1331 Highly conserved prote 95.4 0.056 1.2E-06 54.2 7.9 81 107-213 41-125 (667)
201 TIGR02181 GRX_bact Glutaredoxi 95.4 0.061 1.3E-06 38.8 6.2 59 114-210 2-60 (79)
202 PHA03050 glutaredoxin; Provisi 95.4 0.037 8E-07 43.0 5.2 22 113-134 15-36 (108)
203 TIGR02189 GlrX-like_plant Glut 95.3 0.067 1.5E-06 40.8 6.5 63 113-210 10-72 (99)
204 COG4312 Uncharacterized protei 95.3 0.17 3.7E-06 43.8 9.4 92 91-194 54-153 (247)
205 cd02335 ZZ_ADA2 Zinc finger, Z 95.2 0.014 3E-07 38.5 2.0 31 272-302 1-33 (49)
206 cd03023 DsbA_Com1_like DsbA fa 95.2 0.038 8.3E-07 44.7 5.1 31 108-138 4-34 (154)
207 PF11009 DUF2847: Protein of u 95.1 0.2 4.3E-06 38.6 8.3 75 109-213 19-94 (105)
208 cd03027 GRX_DEP Glutaredoxin ( 95.1 0.13 2.8E-06 36.5 7.0 60 113-210 3-62 (73)
209 PRK10329 glutaredoxin-like pro 95.0 0.38 8.3E-06 35.1 9.5 54 113-202 3-56 (81)
210 PF00569 ZZ: Zinc finger, ZZ t 95.0 0.0084 1.8E-07 39.0 0.5 33 270-302 3-37 (46)
211 cd03029 GRX_hybridPRX5 Glutare 95.0 0.12 2.6E-06 36.5 6.6 59 113-210 3-61 (72)
212 KOG3414 Component of the U4/U6 94.9 0.55 1.2E-05 37.1 10.5 63 108-203 22-84 (142)
213 smart00291 ZnF_ZZ Zinc-binding 94.9 0.022 4.9E-07 36.6 2.3 33 270-302 3-36 (44)
214 PF13462 Thioredoxin_4: Thiore 94.7 0.12 2.7E-06 42.2 7.1 52 101-160 4-55 (162)
215 cd02338 ZZ_PCMF_like Zinc fing 94.7 0.021 4.6E-07 37.7 1.9 30 273-302 2-33 (49)
216 cd02345 ZZ_dah Zinc finger, ZZ 94.6 0.024 5.1E-07 37.4 2.0 30 273-302 2-33 (49)
217 PRK10638 glutaredoxin 3; Provi 94.6 0.24 5.2E-06 36.1 7.6 60 113-210 4-63 (83)
218 cd02341 ZZ_ZZZ3 Zinc finger, Z 94.5 0.025 5.5E-07 37.1 1.9 32 272-303 1-36 (48)
219 TIGR03143 AhpF_homolog putativ 94.4 0.19 4.2E-06 50.3 9.0 69 106-208 363-431 (555)
220 TIGR03140 AhpF alkyl hydropero 94.4 0.18 3.8E-06 50.1 8.5 63 106-202 114-176 (515)
221 KOG0913 Thiol-disulfide isomer 94.4 0.012 2.7E-07 51.2 0.3 68 112-212 42-109 (248)
222 PF05176 ATP-synt_10: ATP10 pr 94.4 0.41 8.9E-06 42.9 9.9 116 88-212 100-232 (252)
223 KOG4582 Uncharacterized conser 94.1 0.022 4.7E-07 51.8 1.2 33 271-303 152-186 (278)
224 TIGR02194 GlrX_NrdH Glutaredox 93.9 0.29 6.2E-06 34.6 6.5 53 114-202 2-54 (72)
225 cd03028 GRX_PICOT_like Glutare 93.8 0.3 6.5E-06 36.3 6.9 64 109-210 7-74 (90)
226 cd03065 PDI_b_Calsequestrin_N 93.8 0.032 6.9E-07 44.2 1.5 31 10-44 72-102 (120)
227 KOG1672 ATP binding protein [P 93.7 0.3 6.5E-06 41.6 7.2 70 108-212 83-152 (211)
228 TIGR00365 monothiol glutaredox 93.3 0.41 8.9E-06 36.3 6.9 63 110-210 12-78 (97)
229 PF00130 C1_1: Phorbol esters/ 93.0 0.062 1.3E-06 35.8 1.7 36 269-304 9-47 (53)
230 COG0695 GrxC Glutaredoxin and 92.9 0.55 1.2E-05 34.2 6.8 20 113-132 3-22 (80)
231 cd00029 C1 Protein kinase C co 92.9 0.066 1.4E-06 34.9 1.7 35 270-304 10-47 (50)
232 PF10571 UPF0547: Uncharacteri 92.7 0.067 1.4E-06 30.3 1.3 23 273-295 2-24 (26)
233 COG0678 AHP1 Peroxiredoxin [Po 92.2 0.91 2E-05 37.1 7.7 119 84-213 4-145 (165)
234 PF02966 DIM1: Mitosis protein 92.2 4.2 9.1E-05 32.6 11.2 62 108-203 19-80 (133)
235 KOG2603 Oligosaccharyltransfer 91.6 3.3 7.1E-05 38.0 11.3 84 102-210 53-141 (331)
236 COG4545 Glutaredoxin-related p 91.1 0.52 1.1E-05 33.7 4.5 70 114-211 5-77 (85)
237 PRK11509 hydrogenase-1 operon 91.0 0.13 2.8E-06 41.4 1.6 29 10-42 76-104 (132)
238 PF13911 AhpC-TSA_2: AhpC/TSA 90.4 1.3 2.9E-05 34.2 7.0 53 131-194 2-54 (115)
239 cd02337 ZZ_CBP Zinc finger, ZZ 90.2 0.13 2.9E-06 32.5 0.9 32 272-304 1-33 (41)
240 cd02965 HyaE HyaE family; HyaE 89.6 0.2 4.3E-06 39.1 1.6 28 12-43 70-97 (111)
241 PF05768 DUF836: Glutaredoxin- 89.6 1.5 3.1E-05 31.9 6.2 56 113-204 2-57 (81)
242 smart00109 C1 Protein kinase C 88.7 0.18 4E-06 32.4 0.7 36 269-304 9-46 (49)
243 KOG1752 Glutaredoxin and relat 88.2 2.9 6.3E-05 32.1 7.2 20 113-132 16-35 (104)
244 PF13778 DUF4174: Domain of un 86.8 8.6 0.00019 30.2 9.4 89 104-212 3-94 (118)
245 PRK12759 bifunctional gluaredo 86.5 1.1 2.5E-05 43.0 5.1 63 113-202 4-66 (410)
246 cd02983 P5_C P5 family, C-term 86.4 6 0.00013 31.6 8.4 51 126-208 41-93 (130)
247 PF13098 Thioredoxin_2: Thiore 86.1 0.99 2.2E-05 34.4 3.7 27 13-42 70-96 (112)
248 cd03007 PDI_a_ERp29_N PDIa fam 85.9 0.72 1.6E-05 36.3 2.8 21 13-33 66-88 (116)
249 PRK10954 periplasmic protein d 85.7 0.82 1.8E-05 39.6 3.3 34 107-140 35-71 (207)
250 cd02954 DIM1 Dim1 family; Dim1 85.3 0.46 1E-05 37.2 1.4 30 10-43 53-82 (114)
251 cd03073 PDI_b'_ERp72_ERp57 PDI 85.0 4.3 9.2E-05 31.5 6.7 50 125-207 34-88 (111)
252 cd02956 ybbN ybbN protein fami 84.4 0.64 1.4E-05 34.4 1.8 29 10-42 51-79 (96)
253 PRK10824 glutaredoxin-4; Provi 83.0 1.6 3.5E-05 34.2 3.6 16 119-134 28-43 (115)
254 cd03004 PDI_a_ERdj5_C PDIa fam 82.2 1.1 2.3E-05 33.8 2.3 25 10-34 58-82 (104)
255 PF07449 HyaE: Hydrogenase-1 e 81.9 2.2 4.7E-05 33.0 3.9 27 185-212 71-97 (107)
256 cd02985 TRX_CDSP32 TRX family, 81.7 1.8 3.9E-05 32.8 3.4 24 15-42 61-84 (103)
257 cd02996 PDI_a_ERp44 PDIa famil 81.6 0.81 1.7E-05 34.9 1.4 24 10-33 63-86 (108)
258 PF01216 Calsequestrin: Calseq 81.2 13 0.00028 34.8 9.2 73 110-214 52-129 (383)
259 PF00085 Thioredoxin: Thioredo 80.4 1 2.2E-05 33.4 1.6 24 10-33 56-79 (103)
260 cd03003 PDI_a_ERdj5_N PDIa fam 79.7 1.2 2.5E-05 33.5 1.7 24 10-33 57-80 (101)
261 TIGR01126 pdi_dom protein disu 79.7 1.7 3.7E-05 32.1 2.6 25 10-34 54-78 (102)
262 TIGR02738 TrbB type-F conjugat 79.5 0.5 1.1E-05 39.0 -0.4 13 280-292 54-66 (153)
263 cd02961 PDI_a_family Protein D 79.3 1.6 3.5E-05 31.8 2.4 24 11-34 57-80 (101)
264 PHA02278 thioredoxin-like prot 78.5 2 4.3E-05 32.9 2.7 24 15-42 62-85 (103)
265 cd02984 TRX_PICOT TRX domain, 77.5 1.8 3.9E-05 31.9 2.2 29 10-42 53-81 (97)
266 cd02963 TRX_DnaJ TRX domain, D 77.0 2 4.3E-05 33.1 2.4 29 10-42 64-92 (111)
267 KOG3170 Conserved phosducin-li 76.9 10 0.00022 32.7 6.6 33 108-140 110-142 (240)
268 cd02989 Phd_like_TxnDC9 Phosdu 76.8 1.6 3.5E-05 33.8 1.8 29 10-42 60-88 (113)
269 PLN03098 LPA1 LOW PSII ACCUMUL 76.6 61 0.0013 31.6 12.6 106 96-212 284-427 (453)
270 cd02950 TxlA TRX-like protein 76.5 2.5 5.5E-05 34.2 2.9 25 15-42 66-90 (142)
271 PTZ00051 thioredoxin; Provisio 76.3 1.7 3.7E-05 32.1 1.8 29 10-42 56-84 (98)
272 cd02994 PDI_a_TMX PDIa family, 76.3 1.8 3.9E-05 32.3 1.9 27 11-41 57-83 (101)
273 cd03072 PDI_b'_ERp44 PDIb' fam 76.1 12 0.00025 29.0 6.5 50 125-207 30-84 (111)
274 cd02951 SoxW SoxW family; SoxW 76.0 3 6.5E-05 32.6 3.2 26 14-42 73-99 (125)
275 cd03001 PDI_a_P5 PDIa family, 75.8 2.3 5E-05 31.6 2.4 25 10-34 57-81 (103)
276 PRK10996 thioredoxin 2; Provis 74.9 1.9 4.2E-05 34.7 1.8 29 10-42 91-119 (139)
277 COG2143 Thioredoxin-related pr 74.9 3.1 6.8E-05 34.4 3.0 26 15-43 105-130 (182)
278 cd02999 PDI_a_ERp44_like PDIa 74.8 1.8 4E-05 32.7 1.6 22 13-34 60-81 (100)
279 cd02957 Phd_like Phosducin (Ph 74.6 2.8 6E-05 32.3 2.6 27 11-42 63-89 (113)
280 cd02978 KaiB_like KaiB-like fa 74.4 12 0.00026 26.8 5.5 63 111-205 2-64 (72)
281 KOG4286 Dystrophin-like protei 74.3 1.2 2.6E-05 45.2 0.5 33 270-302 602-636 (966)
282 KOG3507 DNA-directed RNA polym 73.2 1.2 2.6E-05 30.2 0.1 28 269-296 18-48 (62)
283 KOG0541 Alkyl hydroperoxide re 72.6 14 0.00031 30.5 6.2 102 101-213 34-151 (171)
284 cd02953 DsbDgamma DsbD gamma f 72.3 4.6 0.0001 30.3 3.3 26 14-41 61-86 (104)
285 cd03006 PDI_a_EFP1_N PDIa fami 72.0 1.9 4.1E-05 33.6 1.0 24 10-33 68-92 (113)
286 KOG2507 Ubiquitin regulatory p 71.9 40 0.00086 32.4 9.8 28 185-212 66-93 (506)
287 cd02948 TRX_NDPK TRX domain, T 70.2 3.2 6.9E-05 31.3 2.0 25 14-42 60-84 (102)
288 cd02997 PDI_a_PDIR PDIa family 70.1 2.9 6.2E-05 31.1 1.7 24 14-41 64-87 (104)
289 KOG0910 Thioredoxin-like prote 70.0 2 4.4E-05 35.2 0.8 29 10-42 100-128 (150)
290 TIGR01068 thioredoxin thioredo 69.4 3 6.6E-05 30.5 1.7 28 10-41 53-80 (101)
291 KOG4301 Beta-dystrobrevin [Cyt 69.3 1.8 3.9E-05 40.0 0.5 38 267-304 236-275 (434)
292 PTZ00443 Thioredoxin domain-co 69.2 3.7 8.1E-05 36.1 2.4 29 10-42 91-119 (224)
293 cd02949 TRX_NTR TRX domain, no 69.1 2.5 5.5E-05 31.4 1.2 28 11-42 53-80 (97)
294 COG1198 PriA Primosomal protei 69.0 16 0.00034 38.0 7.1 70 151-242 349-419 (730)
295 cd03005 PDI_a_ERp46 PDIa famil 68.7 3.1 6.7E-05 30.8 1.6 24 10-33 58-81 (102)
296 PF12760 Zn_Tnp_IS1595: Transp 68.6 4.7 0.0001 25.9 2.2 22 272-293 19-45 (46)
297 cd03000 PDI_a_TMX3 PDIa family 68.5 3.3 7.1E-05 31.2 1.7 24 10-33 57-80 (104)
298 cd02962 TMX2 TMX2 family; comp 68.3 3.4 7.3E-05 34.1 1.8 29 11-43 88-122 (152)
299 cd03031 GRX_GRX_like Glutaredo 68.1 25 0.00053 28.8 6.9 13 120-132 15-27 (147)
300 cd02336 ZZ_RSC8 Zinc finger, Z 68.0 4.3 9.3E-05 26.2 1.9 31 272-302 1-32 (45)
301 cd02955 SSP411 TRX domain, SSP 67.4 5.7 0.00012 31.5 2.9 23 20-45 75-97 (124)
302 PHA03075 glutaredoxin-like pro 67.2 7.5 0.00016 30.4 3.4 30 110-139 2-31 (123)
303 cd03002 PDI_a_MPD1_like PDI fa 67.2 3.8 8.3E-05 30.8 1.9 21 14-34 63-83 (109)
304 KOG4277 Uncharacterized conser 66.4 4 8.7E-05 37.3 2.0 24 10-33 85-108 (468)
305 TIGR00595 priA primosomal prot 65.4 24 0.00053 34.9 7.6 46 151-205 129-174 (505)
306 cd02992 PDI_a_QSOX PDIa family 65.3 6.1 0.00013 30.6 2.7 22 13-34 66-87 (114)
307 PF06953 ArsD: Arsenical resis 64.4 66 0.0014 25.5 8.4 61 127-212 25-85 (123)
308 cd03060 GST_N_Omega_like GST_N 64.2 18 0.00038 25.0 4.7 18 115-132 3-20 (71)
309 PRK14018 trifunctional thiored 63.9 5.8 0.00013 39.4 2.8 28 12-42 126-153 (521)
310 PRK09301 circadian clock prote 63.0 26 0.00057 26.8 5.6 66 108-205 4-69 (103)
311 PHA00626 hypothetical protein 62.4 5.9 0.00013 26.7 1.8 16 283-298 21-36 (59)
312 cd02998 PDI_a_ERp38 PDIa famil 62.4 4.6 0.0001 29.9 1.5 21 14-34 64-84 (105)
313 cd03012 TlpA_like_DipZ_like Tl 62.0 6.7 0.00014 30.6 2.4 26 14-42 94-119 (126)
314 PTZ00056 glutathione peroxidas 61.9 3.4 7.3E-05 35.6 0.7 11 282-292 45-55 (199)
315 cd03010 TlpA_like_DsbE TlpA-li 61.6 6.4 0.00014 30.6 2.3 27 13-42 88-114 (127)
316 cd02973 TRX_GRX_like Thioredox 61.2 4.5 9.8E-05 27.6 1.1 22 10-31 37-58 (67)
317 PF13917 zf-CCHC_3: Zinc knuck 60.9 4.5 9.8E-05 25.7 1.0 19 271-290 4-22 (42)
318 cd02967 mauD Methylamine utili 60.8 9.4 0.0002 28.9 3.0 27 15-44 85-111 (114)
319 KOG4236 Serine/threonine prote 60.6 1.3 2.8E-05 43.7 -2.3 44 257-303 145-191 (888)
320 COG1651 DsbG Protein-disulfide 60.4 23 0.00049 31.1 5.8 44 95-139 71-114 (244)
321 PF07449 HyaE: Hydrogenase-1 e 60.3 11 0.00023 29.2 3.1 28 11-42 68-95 (107)
322 KOG3171 Conserved phosducin-li 59.6 77 0.0017 27.8 8.4 84 92-212 139-226 (273)
323 PRK12496 hypothetical protein; 59.5 6 0.00013 33.1 1.8 23 272-294 128-152 (164)
324 PF13240 zinc_ribbon_2: zinc-r 59.3 5.1 0.00011 21.8 0.9 22 274-295 2-23 (23)
325 PF13462 Thioredoxin_4: Thiore 59.0 21 0.00047 28.7 5.1 24 185-211 125-148 (162)
326 KOG4498 Uncharacterized conser 58.8 18 0.00038 30.9 4.4 55 94-158 35-91 (197)
327 PRK13728 conjugal transfer pro 58.7 2.5 5.5E-05 35.9 -0.6 13 280-292 73-85 (181)
328 TIGR02654 circ_KaiB circadian 58.5 38 0.00081 25.2 5.6 64 110-205 3-66 (87)
329 cd02975 PfPDO_like_N Pyrococcu 57.6 6.3 0.00014 30.4 1.5 24 10-33 60-83 (113)
330 PRK09381 trxA thioredoxin; Pro 57.6 6.1 0.00013 29.9 1.4 28 11-42 61-88 (109)
331 PRK11788 tetratricopeptide rep 57.1 17 0.00036 34.0 4.6 26 269-294 352-378 (389)
332 cd02966 TlpA_like_family TlpA- 56.9 9.9 0.00021 28.0 2.5 26 14-42 86-111 (116)
333 PHA02125 thioredoxin-like prot 56.7 4.8 0.00011 28.5 0.7 18 13-30 34-51 (75)
334 PF13743 Thioredoxin_5: Thiore 55.8 11 0.00024 31.7 2.8 21 185-205 136-156 (176)
335 PF10058 DUF2296: Predicted in 55.6 11 0.00024 25.2 2.2 27 267-293 18-52 (54)
336 PF09822 ABC_transp_aux: ABC-t 54.5 1.6E+02 0.0034 26.3 10.6 48 111-165 26-76 (271)
337 KOG4236 Serine/threonine prote 54.4 1.7 3.8E-05 42.9 -2.5 36 269-304 276-314 (888)
338 cd02947 TRX_family TRX family; 54.2 7.1 0.00015 27.5 1.2 20 14-33 52-71 (93)
339 TIGR00411 redox_disulf_1 small 53.8 6.8 0.00015 27.7 1.1 20 12-31 40-59 (82)
340 COG3118 Thioredoxin domain-con 53.2 8.1 0.00018 35.3 1.6 29 10-42 82-110 (304)
341 cd02986 DLP Dim1 family, Dim1- 53.1 9.4 0.0002 29.9 1.8 24 10-33 53-76 (114)
342 COG2888 Predicted Zn-ribbon RN 52.8 6.2 0.00013 26.9 0.6 21 272-294 39-59 (61)
343 smart00661 RPOL9 RNA polymeras 52.4 12 0.00025 24.4 1.9 24 273-296 2-31 (52)
344 PF06053 DUF929: Domain of unk 51.8 16 0.00036 32.6 3.4 32 108-139 57-88 (249)
345 COG3054 Predicted transcriptio 51.6 63 0.0014 26.7 6.3 120 101-242 51-181 (184)
346 PF13743 Thioredoxin_5: Thiore 51.2 24 0.00053 29.6 4.2 27 115-141 2-28 (176)
347 TIGR01617 arsC_related transcr 51.0 35 0.00077 26.4 4.9 32 115-162 3-34 (117)
348 KOG2640 Thioredoxin [Function 50.6 5.9 0.00013 36.3 0.4 71 110-213 77-147 (319)
349 PRK14890 putative Zn-ribbon RN 49.1 13 0.00028 25.4 1.7 11 284-294 47-57 (59)
350 PF12353 eIF3g: Eukaryotic tra 49.0 8.1 0.00018 30.9 0.9 22 267-290 102-123 (128)
351 PF13909 zf-H2C2_5: C2H2-type 48.5 9.5 0.00021 20.5 0.9 10 286-295 1-10 (24)
352 cd03036 ArsC_like Arsenate Red 48.4 15 0.00032 28.3 2.3 19 115-133 3-21 (111)
353 cd03011 TlpA_like_ScsD_MtbDsbE 47.9 12 0.00027 28.6 1.8 23 14-39 82-104 (123)
354 cd02982 PDI_b'_family Protein 47.6 18 0.00039 26.7 2.6 26 9-34 50-77 (103)
355 cd03041 GST_N_2GST_N GST_N fam 47.6 95 0.002 21.7 6.8 18 115-132 4-21 (77)
356 cd02987 Phd_like_Phd Phosducin 47.6 15 0.00032 31.0 2.3 23 16-42 126-148 (175)
357 PF03604 DNA_RNApol_7kD: DNA d 47.4 6.7 0.00014 23.3 0.1 24 272-295 1-27 (32)
358 cd03040 GST_N_mPGES2 GST_N fam 47.0 94 0.002 21.4 6.9 18 115-132 4-21 (77)
359 TIGR02742 TrbC_Ftype type-F co 46.4 94 0.002 24.9 6.6 23 185-207 60-82 (130)
360 cd02993 PDI_a_APS_reductase PD 46.4 15 0.00033 27.8 2.1 20 15-34 67-87 (109)
361 PLN02399 phospholipid hydroper 46.2 7.7 0.00017 34.4 0.4 12 282-293 105-116 (236)
362 PRK06266 transcription initiat 45.5 14 0.00031 31.2 1.9 56 230-297 88-148 (178)
363 PF13248 zf-ribbon_3: zinc-rib 45.1 11 0.00025 21.0 0.9 24 272-295 3-26 (26)
364 cd02958 UAS UAS family; UAS is 44.9 25 0.00054 26.8 3.1 27 14-42 65-91 (114)
365 TIGR00373 conserved hypothetic 44.1 13 0.00028 30.8 1.4 56 229-296 79-139 (158)
366 cd02977 ArsC_family Arsenate R 44.0 20 0.00044 27.0 2.4 20 114-133 2-21 (105)
367 smart00594 UAS UAS domain. 43.6 24 0.00052 27.5 2.8 20 15-34 76-95 (122)
368 cd03026 AhpF_NTD_C TRX-GRX-lik 43.5 17 0.00037 26.8 1.8 22 10-31 50-71 (89)
369 cd03051 GST_N_GTT2_like GST_N 43.3 60 0.0013 21.9 4.7 19 115-133 3-21 (74)
370 KOG0193 Serine/threonine prote 42.7 12 0.00026 37.6 1.1 37 266-302 184-220 (678)
371 PRK01655 spxA transcriptional 42.5 52 0.0011 26.2 4.7 45 113-173 2-49 (131)
372 COG2761 FrnE Predicted dithiol 42.2 81 0.0018 27.8 6.1 25 185-212 173-197 (225)
373 PF01323 DSBA: DSBA-like thior 42.1 60 0.0013 26.9 5.3 28 112-139 1-28 (193)
374 PRK03147 thiol-disulfide oxido 41.9 19 0.00041 29.5 2.1 27 14-43 127-153 (173)
375 TIGR00385 dsbE periplasmic pro 41.5 14 0.00029 30.8 1.2 28 13-43 125-152 (173)
376 PF09673 TrbC_Ftype: Type-F co 41.5 82 0.0018 24.4 5.5 21 185-205 60-80 (113)
377 KOG2996 Rho guanine nucleotide 41.2 18 0.00038 36.2 2.0 72 229-304 496-570 (865)
378 PF01323 DSBA: DSBA-like thior 41.1 65 0.0014 26.7 5.4 21 185-208 156-176 (193)
379 PRK05978 hypothetical protein; 41.1 16 0.00034 30.0 1.4 28 271-298 33-65 (148)
380 PRK15412 thiol:disulfide inter 40.7 18 0.0004 30.4 1.9 26 14-42 131-156 (185)
381 cd00570 GST_N_family Glutathio 40.7 42 0.00091 21.9 3.4 18 115-132 3-20 (71)
382 KOG3116 Predicted C3H1-type Zn 40.3 9 0.00019 31.2 -0.1 24 273-297 29-52 (177)
383 COG1651 DsbG Protein-disulfide 40.0 21 0.00045 31.3 2.2 27 110-136 119-145 (244)
384 PF04134 DUF393: Protein of un 39.7 81 0.0018 23.9 5.3 19 116-134 2-20 (114)
385 PF13832 zf-HC5HC2H_2: PHD-zin 39.7 21 0.00045 27.3 1.9 32 270-302 54-87 (110)
386 smart00531 TFIIE Transcription 39.7 19 0.00042 29.3 1.8 30 268-297 96-135 (147)
387 cd02959 ERp19 Endoplasmic reti 39.5 25 0.00054 27.3 2.3 24 16-42 65-90 (117)
388 PRK12496 hypothetical protein; 39.5 15 0.00033 30.6 1.1 20 283-302 125-152 (164)
389 PF07191 zinc-ribbons_6: zinc- 38.9 12 0.00026 26.6 0.3 26 273-299 3-33 (70)
390 PF07295 DUF1451: Protein of u 38.8 13 0.00028 30.5 0.6 30 265-294 106-139 (146)
391 COG3531 Predicted protein-disu 38.5 84 0.0018 27.1 5.4 46 186-240 164-209 (212)
392 PF06764 DUF1223: Protein of u 37.9 1.1E+02 0.0025 26.3 6.3 34 115-160 4-37 (202)
393 smart00249 PHD PHD zinc finger 37.8 27 0.00058 21.4 1.9 31 274-304 2-33 (47)
394 COG4752 Uncharacterized protei 37.5 43 0.00094 27.5 3.4 101 15-121 35-145 (190)
395 PF00628 PHD: PHD-finger; Int 37.2 27 0.00058 22.5 1.8 30 274-303 2-32 (51)
396 cd03035 ArsC_Yffb Arsenate Red 37.0 31 0.00067 26.3 2.4 19 114-132 2-20 (105)
397 PRK14714 DNA polymerase II lar 36.4 23 0.0005 38.6 2.1 31 272-304 668-703 (1337)
398 PRK12380 hydrogenase nickel in 36.1 12 0.00025 29.2 -0.0 33 270-302 69-104 (113)
399 PF04278 Tic22: Tic22-like fam 35.9 1.7E+02 0.0037 26.6 7.4 110 87-210 73-196 (274)
400 PF01106 NifU: NifU-like domai 35.8 77 0.0017 22.1 4.1 45 95-141 13-58 (68)
401 cd03032 ArsC_Spx Arsenate Redu 35.5 1.1E+02 0.0023 23.6 5.4 42 114-171 3-47 (115)
402 TIGR02443 conserved hypothetic 35.5 30 0.00064 23.6 1.8 25 273-297 11-43 (59)
403 KOG1842 FYVE finger-containing 35.5 15 0.00033 35.3 0.6 67 236-302 144-213 (505)
404 KOG1731 FAD-dependent sulfhydr 35.2 26 0.00057 35.0 2.1 24 12-35 103-126 (606)
405 PRK11032 hypothetical protein; 34.6 21 0.00046 29.7 1.2 29 266-294 119-151 (160)
406 KOG0696 Serine/threonine prote 34.6 7.1 0.00015 37.6 -1.7 36 268-303 118-156 (683)
407 COG2816 NPY1 NTP pyrophosphohy 34.1 30 0.00065 31.4 2.2 28 270-297 110-141 (279)
408 PF09526 DUF2387: Probable met 33.4 33 0.00071 24.4 1.9 25 273-297 10-42 (71)
409 smart00659 RPOLCX RNA polymera 33.3 24 0.00053 22.5 1.1 24 272-295 3-29 (44)
410 cd02969 PRX_like1 Peroxiredoxi 32.7 34 0.00074 28.1 2.3 26 14-42 98-123 (171)
411 KOG0907 Thioredoxin [Posttrans 32.3 34 0.00073 26.3 2.0 20 14-33 63-82 (106)
412 TIGR02740 TraF-like TraF-like 32.2 36 0.00077 30.8 2.4 20 15-34 219-238 (271)
413 KOG0696 Serine/threonine prote 31.9 13 0.00029 35.8 -0.4 34 269-302 54-90 (683)
414 KOG0912 Thiol-disulfide isomer 31.7 29 0.00062 32.0 1.7 30 10-43 57-86 (375)
415 PF08806 Sep15_SelM: Sep15/Sel 31.6 48 0.001 24.0 2.6 33 196-238 41-73 (78)
416 TIGR01626 ytfJ_HI0045 conserve 31.3 43 0.00093 28.5 2.6 26 14-42 134-160 (184)
417 PRK00293 dipZ thiol:disulfide 31.3 46 0.001 33.6 3.3 27 13-42 522-548 (571)
418 COG0375 HybF Zn finger protein 31.2 26 0.00056 27.4 1.2 23 270-292 69-93 (115)
419 PF08534 Redoxin: Redoxin; In 30.9 46 0.00099 26.3 2.7 28 13-43 93-129 (146)
420 PRK10954 periplasmic protein d 30.0 57 0.0012 27.9 3.3 21 186-209 157-177 (207)
421 PF13824 zf-Mss51: Zinc-finger 30.0 33 0.00071 23.1 1.3 23 274-296 2-25 (55)
422 TIGR02661 MauD methylamine deh 30.0 50 0.0011 27.9 2.9 26 15-43 136-161 (189)
423 PF07282 OrfB_Zn_ribbon: Putat 29.9 33 0.00072 23.7 1.5 27 273-299 30-60 (69)
424 PF09297 zf-NADH-PPase: NADH p 29.7 21 0.00045 20.9 0.3 21 273-293 5-29 (32)
425 cd03037 GST_N_GRX2 GST_N famil 29.5 1.8E+02 0.0039 19.6 5.9 16 116-131 4-19 (71)
426 PRK14873 primosome assembly pr 29.0 2.2E+02 0.0048 29.4 7.8 12 195-206 328-339 (665)
427 cd02952 TRP14_like Human TRX-r 28.7 41 0.0009 26.4 2.0 21 14-34 78-99 (119)
428 cd02981 PDI_b_family Protein D 28.6 2.2E+02 0.0049 20.4 6.7 28 109-139 17-44 (97)
429 COG3011 Predicted thiol-disulf 28.5 1.8E+02 0.0038 23.6 5.5 68 110-212 7-75 (137)
430 PRK00564 hypA hydrogenase nick 28.3 26 0.00056 27.5 0.7 27 270-296 70-100 (117)
431 cd03025 DsbA_FrnE_like DsbA fa 27.6 80 0.0017 26.2 3.7 23 185-207 158-180 (193)
432 COG1998 RPS31 Ribosomal protei 27.5 37 0.00079 22.3 1.2 25 270-294 18-46 (51)
433 PLN00410 U5 snRNP protein, DIM 27.2 33 0.00073 27.9 1.2 28 10-41 62-90 (142)
434 PRK02935 hypothetical protein; 26.7 46 0.001 25.5 1.8 32 271-302 70-103 (110)
435 PRK13730 conjugal transfer pil 26.4 3.2E+02 0.0069 23.8 7.0 21 185-205 151-171 (212)
436 PF14787 zf-CCHC_5: GAG-polypr 26.0 19 0.00041 21.9 -0.3 15 273-288 4-18 (36)
437 PF13842 Tnp_zf-ribbon_2: DDE_ 25.4 52 0.0011 19.4 1.5 15 283-297 14-28 (32)
438 PRK12559 transcriptional regul 25.4 75 0.0016 25.3 2.9 44 113-172 2-48 (131)
439 PRK03824 hypA hydrogenase nick 25.0 31 0.00067 27.8 0.6 29 270-298 69-121 (135)
440 PRK00762 hypA hydrogenase nick 24.7 36 0.00078 26.9 1.0 32 270-302 69-110 (124)
441 TIGR00995 3a0901s06TIC22 chlor 24.7 5.3E+02 0.012 23.4 9.6 63 88-163 81-145 (270)
442 PF00643 zf-B_box: B-box zinc 24.2 39 0.00084 20.7 0.9 30 272-303 4-33 (42)
443 PF01363 FYVE: FYVE zinc finge 24.2 42 0.00091 23.1 1.1 38 265-302 3-42 (69)
444 PF13848 Thioredoxin_6: Thiore 24.1 3.7E+02 0.008 21.7 7.1 27 185-212 30-57 (184)
445 cd02991 UAS_ETEA UAS family, E 23.4 90 0.002 24.2 3.0 20 15-34 66-85 (116)
446 PRK05580 primosome assembly pr 23.3 2.5E+02 0.0053 29.1 6.9 17 189-205 323-339 (679)
447 PF02743 Cache_1: Cache domain 23.2 79 0.0017 22.2 2.5 29 187-215 43-71 (81)
448 PF11023 DUF2614: Protein of u 23.0 40 0.00087 26.2 0.9 33 270-302 68-102 (114)
449 cd03025 DsbA_FrnE_like DsbA fa 22.9 85 0.0019 26.0 3.0 27 113-139 3-29 (193)
450 PF12874 zf-met: Zinc-finger o 22.7 43 0.00093 17.8 0.7 8 286-293 1-8 (25)
451 smart00064 FYVE Protein presen 22.6 65 0.0014 22.1 1.8 39 265-303 4-44 (68)
452 PF13831 PHD_2: PHD-finger; PD 22.3 25 0.00053 21.4 -0.3 18 285-302 4-21 (36)
453 cd00350 rubredoxin_like Rubred 22.2 52 0.0011 19.4 1.1 10 285-294 1-10 (33)
454 KOG1356 Putative transcription 21.9 50 0.0011 34.5 1.5 35 268-302 226-260 (889)
455 PF07754 DUF1610: Domain of un 21.7 79 0.0017 17.4 1.6 9 285-293 16-24 (24)
456 KOG2990 C2C2-type Zn-finger pr 21.7 47 0.001 30.1 1.1 21 259-279 40-60 (317)
457 TIGR01295 PedC_BrcD bacterioci 21.7 1.4E+02 0.003 23.3 3.8 25 15-43 76-104 (122)
458 TIGR00100 hypA hydrogenase nic 21.7 37 0.0008 26.5 0.4 33 270-302 69-104 (115)
459 TIGR03759 conj_TIGR03759 integ 21.4 3.8E+02 0.0083 23.1 6.5 76 111-202 110-193 (200)
460 PF01529 zf-DHHC: DHHC palmito 21.2 79 0.0017 25.9 2.4 30 267-296 44-78 (174)
461 PF03190 Thioredox_DsbH: Prote 21.2 62 0.0014 27.0 1.7 31 10-43 79-117 (163)
462 PF13696 zf-CCHC_2: Zinc knuck 21.1 38 0.00082 20.1 0.3 19 271-290 8-26 (32)
463 COG5349 Uncharacterized protei 20.4 36 0.00079 26.8 0.2 28 271-298 21-53 (126)
464 TIGR03140 AhpF alkyl hydropero 20.4 5.1E+02 0.011 25.5 8.4 29 107-136 17-45 (515)
465 cd02988 Phd_like_VIAF Phosduci 20.2 98 0.0021 26.4 2.8 23 17-43 144-166 (192)
466 TIGR02605 CxxC_CxxC_SSSS putat 20.2 55 0.0012 21.2 1.0 13 272-284 6-18 (52)
467 cd03017 PRX_BCP Peroxiredoxin 20.1 70 0.0015 24.9 1.8 26 14-42 89-123 (140)
468 PTZ00255 60S ribosomal protein 20.0 55 0.0012 24.4 1.1 26 269-294 34-63 (90)
No 1
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.93 E-value=9.2e-26 Score=182.42 Aligned_cols=130 Identities=51% Similarity=1.004 Sum_probs=119.2
Q ss_pred CeEeeCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHH
Q 021494 91 GYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYF 170 (311)
Q Consensus 91 df~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~ 170 (311)
||..+.+|+ .+++++++||+|||+||++||++|+.++|.|+++++++.++ +.+++|++|++|.+.+.+.+++
T Consensus 1 ~~l~~~~G~-~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~-------~~~~~vv~is~d~~~~~~~~~~ 72 (131)
T cd03009 1 DFLLRNDGG-KVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKES-------GKNFEIVFISWDRDEESFNDYF 72 (131)
T ss_pred CcccccCCC-CccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhc-------CCCEEEEEEECCCCHHHHHHHH
Confidence 456688999 99999999999999999999999999999999999999864 4579999999999999999999
Q ss_pred hcCCCcccccCc-hhHHHHHHhCCCCccceEEEECCCCcEEEeccchhhhcccccCCCC
Q 021494 171 GTMPWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPF 228 (311)
Q Consensus 171 ~~~~~~~~p~~~-d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~g~~~~~~~g~~~~p~ 228 (311)
++++|..+|+.. +....+.+.|+|.++|+++|||++|+|+.++++.++...|+.+|||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 73 SKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred HcCCeeEcccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 999998888765 4556899999999999999999999999999999999999999997
No 2
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.93 E-value=9.6e-26 Score=184.60 Aligned_cols=124 Identities=27% Similarity=0.540 Sum_probs=107.3
Q ss_pred eeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCC--Cccc
Q 021494 101 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMP--WLAL 178 (311)
Q Consensus 101 ~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~--~~~~ 178 (311)
.+++++++||+|+|+|||+||++|+.++|.|.++|++++++.. -....+++||+||.|.+.+.+.+|+++++ |+.+
T Consensus 17 ~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~--~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~ 94 (146)
T cd03008 17 REIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFY--VDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL 94 (146)
T ss_pred cccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcc--cccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence 5688999999999999999999999999999999998875300 00024699999999999889999999887 7778
Q ss_pred ccCchhHHHHHHhCCCCccceEEEECCCCcEEEeccchhhhcccccCC
Q 021494 179 PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAY 226 (311)
Q Consensus 179 p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~g~~~~~~~g~~~~ 226 (311)
|+..+....+.+.|+|.++|+++|||++|+|+.++|+..++.+|..+|
T Consensus 95 p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 95 PFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred cccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 887766678999999999999999999999999999999998886553
No 3
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.92 E-value=2e-24 Score=174.99 Aligned_cols=128 Identities=50% Similarity=0.952 Sum_probs=112.5
Q ss_pred eEeeCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHh
Q 021494 92 YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFG 171 (311)
Q Consensus 92 f~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~ 171 (311)
|++|.+ + ++++++++||+++|+||++||++|+.++|.|++++++++++ ..+++|++|++|.+.+++.++++
T Consensus 2 ~~~~~~-~-~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~-------~~~v~vi~Vs~d~~~~~~~~~~~ 72 (132)
T cd02964 2 FLLDGE-G-VVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEE-------GKNFEIVFVSRDRSEESFNEYFS 72 (132)
T ss_pred ccccCC-c-cccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhc-------CCCeEEEEEecCCCHHHHHHHHh
Confidence 445666 5 89999999999999999999999999999999999999853 24799999999999999999999
Q ss_pred cC-CCcccccCc-hhHHHHHHhCCCCccceEEEECCCCcEEEeccchhhhc-ccccCCCC
Q 021494 172 TM-PWLALPFGD-PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINL-YQENAYPF 228 (311)
Q Consensus 172 ~~-~~~~~p~~~-d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~g~~~~~~-~g~~~~p~ 228 (311)
++ +|..+++.. .....+.+.|+|.++|+++|||++|+|+.+++...+.. +|+.+|||
T Consensus 73 ~~~~~~~~~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 73 EMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCCCeEeeccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 88 688888765 34567889999999999999999999999999888765 89999987
No 4
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.88 E-value=6.9e-22 Score=162.53 Aligned_cols=117 Identities=29% Similarity=0.491 Sum_probs=104.6
Q ss_pred hcCCCCCeEe-e--CCCCceeeccccCCCEEEEEEecC-CChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecC
Q 021494 85 LTNHDRGYLL-G--HPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 160 (311)
Q Consensus 85 ~g~~~pdf~l-~--~~g~~~v~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d 160 (311)
.|+.+|+|.+ + .+|+ ++++++++||+++|+||++ |||+|+.++|.|.+++++|+++ ++.+++|+.+
T Consensus 2 ~G~~~P~~~~~~~~~~g~-~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~---------~v~~v~v~~~ 71 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGK-PVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK---------GVDVVGVSSD 71 (146)
T ss_dssp TTSB--CCEEEEEETTSE-EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT---------TCEEEEEEES
T ss_pred CCCCCCCeEEEeecCCCC-EecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC---------ceEEEEeccc
Confidence 5889999998 5 9999 9999999999999999999 9999999999999999999865 8999999999
Q ss_pred CCHHHHHHHHhcCCCcccccCchhHHHHHHhCCCC---------ccceEEEECCCCcEEEec
Q 021494 161 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ---------GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~---------~~Pt~vlid~~G~iv~~~ 213 (311)
.+.. ..+++++.+ ..+|+..|....+.+.|++. ++|+++|||++|+|++++
T Consensus 72 ~~~~-~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 72 DDPP-VREFLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp SSHH-HHHHHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred CCHH-HHHHHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 8876 777887755 77888888888999999998 999999999999999983
No 5
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.87 E-value=5.4e-22 Score=161.24 Aligned_cols=121 Identities=47% Similarity=0.881 Sum_probs=112.5
Q ss_pred eCCCCceeecc-ccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhc-
Q 021494 95 GHPPDEKVPVS-SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGT- 172 (311)
Q Consensus 95 ~~~g~~~v~l~-~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~- 172 (311)
..+|. .+..+ .++||+|++||.|.||++|+.+.|.|.++|++++++ +..++||+||.|.+.+++..|+.+
T Consensus 19 ~~~~~-~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~-------~~~fEVvfVS~D~~~~~~~~y~~~~ 90 (157)
T KOG2501|consen 19 KQDGT-EVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDN-------AAPFEVVFVSSDRDEESLDEYMLEH 90 (157)
T ss_pred ccCCc-cchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhc-------CCceEEEEEecCCCHHHHHHHHHhc
Confidence 77777 66665 789999999999999999999999999999999976 668999999999999999999996
Q ss_pred -CCCcccccCchhHHHHHHhCCCCccceEEEECCCCcEEEeccchhhhcccc
Q 021494 173 -MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQE 223 (311)
Q Consensus 173 -~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~g~~~~~~~g~ 223 (311)
.+|+.+|+.++..+++.++|+|.++|++++++++|.+|..+|+.++...|.
T Consensus 91 ~~~W~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 91 HGDWLAIPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred CCCeEEecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 569999999999999999999999999999999999999999999998874
No 6
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.85 E-value=5.3e-21 Score=163.81 Aligned_cols=116 Identities=19% Similarity=0.157 Sum_probs=97.0
Q ss_pred HHhcCCCCCeEe-eCC--CCceeecccc-CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEe
Q 021494 83 NLLTNHDRGYLL-GHP--PDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 158 (311)
Q Consensus 83 ~~~g~~~pdf~l-~~~--g~~~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs 158 (311)
...|.++|+|.+ +.+ |+ .++++++ +||+++|+|||+||++|+.++|.|.++.+ + +++|++|+
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~-~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~---------~~~vi~v~ 104 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQ-FYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q---------GIRVVGMN 104 (185)
T ss_pred hhcCCCCCCcCCccCCCCCc-cccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c---------CCEEEEEE
Confidence 346899999999 766 46 6777665 79999999999999999999999987643 2 68899999
Q ss_pred cCCCHHHHHHHHhcCCCcccc-cCchhHHHHHHhCCCCccceEEEECCCCcEEEec
Q 021494 159 TDRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 159 ~d~~~~~~~~~~~~~~~~~~p-~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~ 213 (311)
.|++.++..+++++++ ..+| +..|....+.+.|+|.++|+++|||++|+|++++
T Consensus 105 ~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 105 YKDDRQKAISWLKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred CCCCHHHHHHHHHHcC-CCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence 9888888888988776 3454 3456677889999999999999999999999883
No 7
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.85 E-value=1.2e-20 Score=143.82 Aligned_cols=93 Identities=45% Similarity=0.913 Sum_probs=84.5
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcC--CCcccccCchhHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTM--PWLALPFGDPTIK 186 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~--~~~~~p~~~d~~~ 186 (311)
||+++|+|||+||++|+.++|.|.+++++|++ +.+++||+|++|.+.++++++++++ +|..+++..+...
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~--------~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK--------KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNS 72 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--------TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--------CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHH
Confidence 79999999999999999999999999999983 2489999999999999999999987 8999999988888
Q ss_pred HHHHhCCCCccceEEEECCCCcE
Q 021494 187 ELTKYFDVQGIPCLVIIGPEGKT 209 (311)
Q Consensus 187 ~l~~~~~v~~~Pt~vlid~~G~i 209 (311)
.+.+.|+|.++|+++|+|++|+|
T Consensus 73 ~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 73 ELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHTT-TSSSEEEEEETTSBE
T ss_pred HHHHHCCCCcCCEEEEECCCCCC
Confidence 99999999999999999999987
No 8
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.85 E-value=1.5e-20 Score=147.98 Aligned_cols=110 Identities=22% Similarity=0.370 Sum_probs=95.8
Q ss_pred CCeEe-eCCCCceeeccccC-CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHH
Q 021494 90 RGYLL-GHPPDEKVPVSSLV-GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 167 (311)
Q Consensus 90 pdf~l-~~~g~~~v~l~~~~-gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~ 167 (311)
|+|.+ +.+|+ .+++++++ ||+++|+||++||++|+.++|.++++++++.. ++.|+.|+ |.+.++..
T Consensus 1 p~f~l~~~~G~-~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~----------~~~vi~v~-~~~~~~~~ 68 (114)
T cd02967 1 PTFDLTTIDGA-PVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD----------WLDVVLAS-DGEKAEHQ 68 (114)
T ss_pred CCceeecCCCC-EEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC----------CcEEEEEe-CCCHHHHH
Confidence 68888 89999 99999997 99999999999999999999999999887753 57888776 77788899
Q ss_pred HHHhcCCCcccccCchhHHHHHHhCCCCccceEEEECCCCcEEEec
Q 021494 168 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 168 ~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~ 213 (311)
++.++++...+|+.. ...+.+.|++.++|+++|||++|+|++++
T Consensus 69 ~~~~~~~~~~~p~~~--~~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 69 RFLKKHGLEAFPYVL--SAELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHHHHhCCCCCcEEe--cHHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 999988865677655 34688999999999999999999999874
No 9
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.84 E-value=7e-21 Score=151.76 Aligned_cols=116 Identities=28% Similarity=0.538 Sum_probs=104.6
Q ss_pred hcCCCCCeEe-eCCCCceeeccccCCCEEEEEEecC-CChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCC
Q 021494 85 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 162 (311)
Q Consensus 85 ~g~~~pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~ 162 (311)
+|+++|+|.+ +.+|+ .+++++++||+++|+||++ ||++|...++.|++++++|+.+ ++.|++|+.|..
T Consensus 1 vG~~~P~f~l~~~~g~-~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~---------~~~vi~is~d~~ 70 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGK-TVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK---------GVQVIGISTDDP 70 (124)
T ss_dssp TTSBGGCEEEETTTSE-EEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT---------TEEEEEEESSSH
T ss_pred CcCCCCCcEeECCCCC-EEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccc---------eEEeeecccccc
Confidence 5899999999 89999 9999999999999999998 9999999999999999999965 899999999664
Q ss_pred HHHHHHHHhcCCCcccccCchhHHHHHHhCCCC------ccceEEEECCCCcEEEe
Q 021494 163 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~------~~Pt~vlid~~G~iv~~ 212 (311)
. +.+++.+..+ ..+|+..|....+.+.|++. .+|+++|||++|+|+++
T Consensus 71 ~-~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 71 E-EIKQFLEEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp H-HHHHHHHHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred c-chhhhhhhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 4 6677776665 78888888888999999998 99999999999999874
No 10
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.83 E-value=7.4e-20 Score=154.53 Aligned_cols=117 Identities=26% Similarity=0.502 Sum_probs=108.1
Q ss_pred hcCCCCCeEe-eCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCH
Q 021494 85 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 163 (311)
Q Consensus 85 ~g~~~pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~ 163 (311)
.|..+|+|.+ +.+|+ .+++++++||+++|+||++||++|+...+.|.++++++.++ ++.+++|+.|.+.
T Consensus 37 ~g~~~p~~~~~~~~g~-~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~---------~~~vi~i~~d~~~ 106 (173)
T PRK03147 37 VGKEAPNFVLTDLEGK-KIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK---------GVEIIAVNVDETE 106 (173)
T ss_pred CCCCCCCcEeecCCCC-EEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC---------CeEEEEEEcCCCH
Confidence 6889999999 89999 99999999999999999999999999999999999999864 7999999999999
Q ss_pred HHHHHHHhcCCCcccccCchhHHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 164 TSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 164 ~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+.+.++.++++ ..+|+..|....+.+.|++.++|++++||++|+++..
T Consensus 107 ~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 107 LAVKNFVNRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HHHHHHHHHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 99999998776 5777777778899999999999999999999999976
No 11
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.83 E-value=2.8e-20 Score=149.41 Aligned_cols=112 Identities=18% Similarity=0.261 Sum_probs=97.1
Q ss_pred CCCCeEe-eCCC--CceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHH
Q 021494 88 HDRGYLL-GHPP--DEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 164 (311)
Q Consensus 88 ~~pdf~l-~~~g--~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~ 164 (311)
++|+|.+ +.+| . .+++++++||+++|+||++||++|+.++|.|.++.+++ +++||+|+.+.+.+
T Consensus 2 ~~p~f~~~~~~g~~~-~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~------------~~~vv~v~~~~~~~ 68 (127)
T cd03010 2 PAPAFSLPALPGPDK-TLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG------------RVPIYGINYKDNPE 68 (127)
T ss_pred CCCCcccccccCCCc-cccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc------------CcEEEEEECCCCHH
Confidence 5799999 7877 7 89999999999999999999999999999998876553 48899999999999
Q ss_pred HHHHHHhcCCCcccccCchhHHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 165 SFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 165 ~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+++++++.+.....++..|....+++.|++.++|++++||++|+|+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 69 NALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred HHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEE
Confidence 999999877643334455667789999999999999999999999987
No 12
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.83 E-value=7.9e-20 Score=176.90 Aligned_cols=116 Identities=17% Similarity=0.288 Sum_probs=103.4
Q ss_pred hcCCCCCeEe-eCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecC---
Q 021494 85 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--- 160 (311)
Q Consensus 85 ~g~~~pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d--- 160 (311)
.+.++|+|.+ +.+|+ .+.++ +||+|||+|||+||++|+.++|.|++++++++.+ +++||+|+++
T Consensus 34 ~~~~lP~f~l~D~dG~-~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~---------~v~VI~Vs~~~~~ 101 (521)
T PRK14018 34 VPHTLSTLKTADNRPA-SVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS---------SANLITVASPGFL 101 (521)
T ss_pred ccCCCCCeEeecCCCc-eeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC---------CeEEEEEeccccc
Confidence 4568999999 99999 88887 8999999999999999999999999999998743 7999999873
Q ss_pred --CCHHHHHHHHhcCCCcccccCchhHHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 161 --RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 161 --~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
.+.+++.+++..+.+..+|+..|....+.+.|+|.++|+++|||++|+|+.+
T Consensus 102 ~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~ 155 (521)
T PRK14018 102 HEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRI 155 (521)
T ss_pred ccccHHHHHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence 3456788888888777888888888899999999999999999999999988
No 13
>PLN02412 probable glutathione peroxidase
Probab=99.83 E-value=2.7e-20 Score=156.86 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=92.9
Q ss_pred CCCCCeEe-eCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC----
Q 021494 87 NHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---- 161 (311)
Q Consensus 87 ~~~pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~---- 161 (311)
..+|+|++ +.+|+ .+++++++||++||+||++||++|+.++|.|++++++|+++ +++|++|+.|.
T Consensus 7 ~~~pdf~l~d~~G~-~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~---------g~~vvgv~~~~~~~~ 76 (167)
T PLN02412 7 KSIYDFTVKDIGGN-DVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ---------GFEILAFPCNQFLGQ 76 (167)
T ss_pred CCCCceEEECCCCC-EEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC---------CcEEEEecccccccC
Confidence 56899999 89999 99999999999999999999999999999999999999975 89999999863
Q ss_pred ---CHHHHHHHH-hcCCCcccccCch--hH-HHHHHhCC-------------CCccceEEEECCCCcEEEec
Q 021494 162 ---DQTSFESYF-GTMPWLALPFGDP--TI-KELTKYFD-------------VQGIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 162 ---~~~~~~~~~-~~~~~~~~p~~~d--~~-~~l~~~~~-------------v~~~Pt~vlid~~G~iv~~~ 213 (311)
+.++..+++ .+++ +.+|+..+ .+ ......|+ |...|++||||++|+|+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~ 147 (167)
T PLN02412 77 EPGSNEEIQQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY 147 (167)
T ss_pred CCCCHHHHHHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence 345666664 4444 66776532 22 13333322 66789999999999999983
No 14
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.83 E-value=5.6e-20 Score=159.09 Aligned_cols=119 Identities=18% Similarity=0.200 Sum_probs=95.3
Q ss_pred HhcCCCCCeEe-eCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecC--
Q 021494 84 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-- 160 (311)
Q Consensus 84 ~~g~~~pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d-- 160 (311)
..+..+|+|++ +.+|+ .+++++++||+|||+|||+||++|+.++|.|++++++|.++ +++||+|++|
T Consensus 14 ~~~~~~pdf~l~d~~G~-~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~---------g~~vvgv~~~~~ 83 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGT-TVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL---------GLEILAFPTSQF 83 (199)
T ss_pred hcCCCCCceEEECCCCC-EEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC---------ceEEEEecchhc
Confidence 35778999999 99999 99999999999999999999999999999999999999865 8999999975
Q ss_pred -----CCHHHHHHHHhcCCCcccccCch------hHHH--------HHHhCCCC----cc---ceEEEECCCCcEEEec
Q 021494 161 -----RDQTSFESYFGTMPWLALPFGDP------TIKE--------LTKYFDVQ----GI---PCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 161 -----~~~~~~~~~~~~~~~~~~p~~~d------~~~~--------l~~~~~v~----~~---Pt~vlid~~G~iv~~~ 213 (311)
++.++.++++++++ +.+|+..+ .... +...|++. ++ |++||||++|+|+.+.
T Consensus 84 ~~~e~d~~e~~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~ 161 (199)
T PTZ00056 84 LNQEFPNTKDIRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF 161 (199)
T ss_pred cCCCCCCHHHHHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence 35678888888776 56666432 1112 22334442 23 3799999999999884
No 15
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.82 E-value=3.9e-20 Score=148.58 Aligned_cols=105 Identities=25% Similarity=0.338 Sum_probs=94.7
Q ss_pred CCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecC-----CCHHHHHHHHhc
Q 021494 98 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-----RDQTSFESYFGT 172 (311)
Q Consensus 98 g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d-----~~~~~~~~~~~~ 172 (311)
|+ ++++++++||+++|+||++||++|.+++|.|++++++|+++ +++|++|+.+ .+.+.+++++++
T Consensus 13 ~~-~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~---------~~~vi~i~~~~~~~~~~~~~~~~~~~~ 82 (126)
T cd03012 13 DK-PLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD---------GLVVIGVHSPEFAFERDLANVKSAVLR 82 (126)
T ss_pred CC-ccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC---------CeEEEEeccCccccccCHHHHHHHHHH
Confidence 56 89999999999999999999999999999999999999864 7999999863 457788888888
Q ss_pred CCCcccccCchhHHHHHHhCCCCccceEEEECCCCcEEEec
Q 021494 173 MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 173 ~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~ 213 (311)
++ +.+|+..|....+.+.|++.++|+++|||++|+|+++.
T Consensus 83 ~~-~~~p~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 83 YG-ITYPVANDNDYATWRAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred cC-CCCCEEECCchHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence 77 57888888888999999999999999999999999883
No 16
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.82 E-value=3.5e-20 Score=163.31 Aligned_cols=120 Identities=14% Similarity=0.194 Sum_probs=96.2
Q ss_pred HHhcCCCCCeEe-eCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecC-
Q 021494 83 NLLTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD- 160 (311)
Q Consensus 83 ~~~g~~~pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d- 160 (311)
...|..+|+|.+ +.+|+ .+++++++||+|||+|||+||++|..++|.|++++++|+++ +++||+|+.|
T Consensus 73 ~~~g~~aPdF~l~d~~G~-~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~---------Gv~VIgV~~d~ 142 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGK-DVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ---------GFEILAFPCNQ 142 (236)
T ss_pred hhcCCCCCceEEECCCCC-EEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC---------CcEEEEEeccc
Confidence 357889999999 99999 99999999999999999999999999999999999999865 8999999975
Q ss_pred ------CCHHHHHHHHh-cCCCcccccCc--hhHH-HHHHhC-------C------CCccceEEEECCCCcEEEec
Q 021494 161 ------RDQTSFESYFG-TMPWLALPFGD--PTIK-ELTKYF-------D------VQGIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 161 ------~~~~~~~~~~~-~~~~~~~p~~~--d~~~-~l~~~~-------~------v~~~Pt~vlid~~G~iv~~~ 213 (311)
.+.++.++++. +++ +.+|+.. |.+. .+...| + +...|++||||++|+|+.+.
T Consensus 143 ~~~~e~~s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~ 217 (236)
T PLN02399 143 FGGQEPGSNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERY 217 (236)
T ss_pred ccccCCCCHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEE
Confidence 34567788873 444 5677653 2222 232222 2 35579999999999999984
No 17
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.82 E-value=1.7e-19 Score=152.49 Aligned_cols=118 Identities=14% Similarity=0.247 Sum_probs=106.5
Q ss_pred cCCCCCeEe-eCCCCceeecccc-CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC--
Q 021494 86 TNHDRGYLL-GHPPDEKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 161 (311)
Q Consensus 86 g~~~pdf~l-~~~g~~~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~-- 161 (311)
|..+|+|.+ +.+|+ .++++++ +||++||+||++||+.|..+++.|.+++++|+++ +++||+|++|.
T Consensus 1 g~~~p~f~l~~~~g~-~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~---------~v~~v~is~d~~~ 70 (171)
T cd02969 1 GSPAPDFSLPDTDGK-TYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK---------GVAVVAINSNDIE 70 (171)
T ss_pred CCcCCCccccCCCCC-EEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC---------CeEEEEEecCccc
Confidence 567899999 99999 9999998 8999999999999999999999999999999854 79999999985
Q ss_pred -----CHHHHHHHHhcCCCcccccCchhHHHHHHhCCCCccceEEEECCCCcEEEecc
Q 021494 162 -----DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 214 (311)
Q Consensus 162 -----~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~g 214 (311)
+.+.+++++..++ +.+|+..|....+.+.|++..+|+++|||++|+|++..+
T Consensus 71 ~~~~d~~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~ 127 (171)
T cd02969 71 AYPEDSPENMKAKAKEHG-YPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGR 127 (171)
T ss_pred cccccCHHHHHHHHHHCC-CCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeec
Confidence 5788999998777 458888888889999999999999999999999998743
No 18
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.82 E-value=9.4e-20 Score=153.56 Aligned_cols=116 Identities=13% Similarity=0.141 Sum_probs=100.9
Q ss_pred hcCCCCCeEe-eCCCCceeeccccCCCEEEEEEecCC-ChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCC
Q 021494 85 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 162 (311)
Q Consensus 85 ~g~~~pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~ 162 (311)
+|..+|+|++ +.+|+ .+++++++||+++|+||++| |++|..++|.|+++++++. +++|++||.|..
T Consensus 20 ~G~~~P~f~l~~~~g~-~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-----------~~~vv~vs~D~~ 87 (167)
T PRK00522 20 VGDKAPDFTLVANDLS-DVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-----------NTVVLCISADLP 87 (167)
T ss_pred CCCCCCCeEEEcCCCc-EEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-----------CcEEEEEeCCCH
Confidence 6899999999 88999 99999999999999999999 9999999999999988873 589999999864
Q ss_pred HHHHHHHHhcCCCcccccCch-hHHHHHHhCCCCccc---------eEEEECCCCcEEEec
Q 021494 163 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIP---------CLVIIGPEGKTVTKQ 213 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~~p~~~d-~~~~l~~~~~v~~~P---------t~vlid~~G~iv~~~ 213 (311)
...+++.++++...+++..| ..+.+++.||+...| +++|||++|+|++.+
T Consensus 88 -~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~ 147 (167)
T PRK00522 88 -FAQKRFCGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSE 147 (167)
T ss_pred -HHHHHHHHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEE
Confidence 45677777776444777777 456999999998777 999999999999885
No 19
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.82 E-value=1.6e-19 Score=148.04 Aligned_cols=116 Identities=13% Similarity=0.134 Sum_probs=100.6
Q ss_pred hcCCCCCeEe-eCCCCceeeccccCCCEEEEEEecCC-ChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCC
Q 021494 85 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARW-CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 162 (311)
Q Consensus 85 ~g~~~pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~w-C~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~ 162 (311)
+|..+|+|.+ +.+|+ .+++++++||+++|+||++| |++|+.++|.|+++++++. ++.||+||.|.
T Consensus 2 ~G~~aP~f~l~~~~g~-~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-----------~~~vi~Is~d~- 68 (143)
T cd03014 2 VGDKAPDFTLVTSDLS-EVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-----------NTVVLTISADL- 68 (143)
T ss_pred CCCCCCCcEEECCCCc-EEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-----------CCEEEEEECCC-
Confidence 5889999999 89999 99999999999999999998 6999999999999999863 68999999986
Q ss_pred HHHHHHHHhcCCCcccccCchhH-HHHHHhCCCCc------cceEEEECCCCcEEEec
Q 021494 163 QTSFESYFGTMPWLALPFGDPTI-KELTKYFDVQG------IPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~~p~~~d~~-~~l~~~~~v~~------~Pt~vlid~~G~iv~~~ 213 (311)
....+++.+.++...+++..|.. ..+.+.||+.. .|+++|||++|+|+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 69 PFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred HHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence 44557777777655778777765 89999999963 79999999999999884
No 20
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.82 E-value=1.4e-19 Score=150.24 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=102.8
Q ss_pred hcCCCCCeEe-eCCCCceeeccccCCCEEEEEEecC-CChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCC
Q 021494 85 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSAR-WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 162 (311)
Q Consensus 85 ~g~~~pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~-wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~ 162 (311)
.|.++|+|.+ +.+|+ .+++++++||++||+||++ ||+.|..+++.|.+++++++++ +++||+|+.|.
T Consensus 6 ~g~~~p~f~l~~~~G~-~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~---------~v~vi~Is~d~- 74 (154)
T PRK09437 6 AGDIAPKFSLPDQDGE-QVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA---------GVVVLGISTDK- 74 (154)
T ss_pred CCCcCCCcEeeCCCCC-EEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCCC-
Confidence 5889999999 99999 9999999999999999986 7888999999999999999865 79999999985
Q ss_pred HHHHHHHHhcCCCcccccCchhHHHHHHhCCCCcc------------ceEEEECCCCcEEEe
Q 021494 163 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGI------------PCLVIIGPEGKTVTK 212 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~------------Pt~vlid~~G~iv~~ 212 (311)
.+++.++.++++ +.+|+..|....+.+.|++... |+++|||++|+|+..
T Consensus 75 ~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 75 PEKLSRFAEKEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred HHHHHHHHHHhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 578888888776 5778877777899999998754 778999999999988
No 21
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.81 E-value=4.3e-19 Score=150.38 Aligned_cols=119 Identities=20% Similarity=0.302 Sum_probs=99.3
Q ss_pred hcCCCCCeEe-eCCC----CceeeccccCCCEEEEEEe-cCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEe
Q 021494 85 LTNHDRGYLL-GHPP----DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 158 (311)
Q Consensus 85 ~g~~~pdf~l-~~~g----~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs 158 (311)
+|.++|+|.+ +.+| + .+++++++||++||+|| ++||++|..+++.|++++++|.++ ++.|++||
T Consensus 1 vG~~aP~f~~~~~~g~~~~~-~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~---------~v~vv~Is 70 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFK-EISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL---------NAEVLGVS 70 (173)
T ss_pred CCCcCCCCEeecccCCCCce-EEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEe
Confidence 4789999999 6666 6 89999999999999999 899999999999999999999865 89999999
Q ss_pred cCCCHH--HHHHHHhc---CCCcccccCchhHHHHHHhCCCC------ccceEEEECCCCcEEEec
Q 021494 159 TDRDQT--SFESYFGT---MPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 159 ~d~~~~--~~~~~~~~---~~~~~~p~~~d~~~~l~~~~~v~------~~Pt~vlid~~G~iv~~~ 213 (311)
.|.... .|.+...+ ..-+.+++..|....+.+.|++. .+|+++|||++|+|++.+
T Consensus 71 ~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 71 TDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred cCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 986432 33333322 12356788888888999999996 678999999999999984
No 22
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.81 E-value=2.9e-19 Score=153.52 Aligned_cols=131 Identities=23% Similarity=0.286 Sum_probs=102.8
Q ss_pred HhcCCCCCeEe-eCCCCceeecc--ccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecC
Q 021494 84 LLTNHDRGYLL-GHPPDEKVPVS--SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 160 (311)
Q Consensus 84 ~~g~~~pdf~l-~~~g~~~v~l~--~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d 160 (311)
-+|..+|+|++ +.+|+ .++++ +++||+++|+||++||++|+.++|.+.++++++ ++.+++|+ +
T Consensus 47 ~vG~~aP~f~l~d~~G~-~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~------------~~~vv~Is-~ 112 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGE-PVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE------------ETDVVMIS-D 112 (189)
T ss_pred CCCCcCCCcEecCCCCC-EEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc------------CCcEEEEe-C
Confidence 47889999999 89999 99994 579999999999999999999999999887643 45688998 4
Q ss_pred CCHHHHHHHHhcCCCcccccCchhHHHHHHhCCCCccceEEEECCCCcEEEeccchhhhcccccCCCCcHHHHHHHHHHH
Q 021494 161 RDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQM 240 (311)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~g~~~~~~~g~~~~p~~~~~i~~L~~~~ 240 (311)
++.++..+++++++....++. ...++.+.|++..+|++++||++|+|+++.. ..+.+.++++.+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~y~v~~~P~~~lID~~G~I~~~g~------------~~~~~~le~ll~~l 178 (189)
T TIGR02661 113 GTPAEHRRFLKDHELGGERYV--VSAEIGMAFQVGKIPYGVLLDQDGKIRAKGL------------TNTREHLESLLEAD 178 (189)
T ss_pred CCHHHHHHHHHhcCCCcceee--chhHHHHhccCCccceEEEECCCCeEEEccC------------CCCHHHHHHHHHHH
Confidence 466788888887763222222 2568899999999999999999999998621 12445566666655
Q ss_pred HH
Q 021494 241 EE 242 (311)
Q Consensus 241 ~~ 242 (311)
+.
T Consensus 179 ~~ 180 (189)
T TIGR02661 179 RE 180 (189)
T ss_pred Hc
Confidence 44
No 23
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.81 E-value=1.1e-19 Score=154.06 Aligned_cols=117 Identities=17% Similarity=0.241 Sum_probs=96.4
Q ss_pred HHhcCCCCCeEe-eCCCC-ceeecccc-CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEec
Q 021494 83 NLLTNHDRGYLL-GHPPD-EKVPVSSL-VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 159 (311)
Q Consensus 83 ~~~g~~~pdf~l-~~~g~-~~v~l~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~ 159 (311)
..+|.++|+|++ +.+|+ ..++++++ +||+++|+||++||++|+.++|.++++++ + +++|++|+.
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~---------~~~vi~V~~ 100 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----D---------GLPIVGVDY 100 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----c---------CCEEEEEEC
Confidence 357899999999 77775 14454565 78999999999999999999999877653 2 588999999
Q ss_pred CCCHHHHHHHHhcCCCcccc-cCchhHHHHHHhCCCCccceEEEECCCCcEEEec
Q 021494 160 DRDQTSFESYFGTMPWLALP-FGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 160 d~~~~~~~~~~~~~~~~~~p-~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~ 213 (311)
+++.++..+++++++ +.+| +..|....+.+.|++.++|++++||++|+|++++
T Consensus 101 ~~~~~~~~~~~~~~~-~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~ 154 (173)
T TIGR00385 101 KDQSQNALKFLKELG-NPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRH 154 (173)
T ss_pred CCChHHHHHHHHHcC-CCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEE
Confidence 888888888888776 3454 4456677899999999999999999999999883
No 24
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.81 E-value=4.6e-20 Score=153.02 Aligned_cols=113 Identities=15% Similarity=0.220 Sum_probs=92.3
Q ss_pred CCCeEe-eCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC------
Q 021494 89 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR------ 161 (311)
Q Consensus 89 ~pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~------ 161 (311)
+|+|++ +.+|+ ++++++++||+|+|+|||+||+ |+.++|.|++++++|+++ +++|++|++|.
T Consensus 2 ~~~f~l~d~~G~-~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~---------~~~vv~v~~~~~~~~~~ 70 (152)
T cd00340 2 IYDFSVKDIDGE-PVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR---------GLVVLGFPCNQFGGQEP 70 (152)
T ss_pred cceeEEECCCCC-EEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC---------CEEEEEeccCccccCCC
Confidence 589999 99999 9999999999999999999999 999999999999999854 79999999763
Q ss_pred -CHHHHHHHHhc-CCCcccccCchh--HHH-HHHhCC--CCccc-----------eEEEECCCCcEEEec
Q 021494 162 -DQTSFESYFGT-MPWLALPFGDPT--IKE-LTKYFD--VQGIP-----------CLVIIGPEGKTVTKQ 213 (311)
Q Consensus 162 -~~~~~~~~~~~-~~~~~~p~~~d~--~~~-l~~~~~--v~~~P-----------t~vlid~~G~iv~~~ 213 (311)
+.+..++++++ ++ +.+|+..|. ... ....|+ +.++| ++||||++|+|+.+.
T Consensus 71 ~~~~~~~~f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~ 139 (152)
T cd00340 71 GSNEEIKEFCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRF 139 (152)
T ss_pred CCHHHHHHHHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEE
Confidence 35678888876 45 567776432 222 344555 45666 899999999999983
No 25
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.81 E-value=4.1e-19 Score=146.35 Aligned_cols=117 Identities=20% Similarity=0.240 Sum_probs=101.5
Q ss_pred hcCCCCCeEe-eCCCCceeeccccCC-CEEEEEEe-cCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC
Q 021494 85 LTNHDRGYLL-GHPPDEKVPVSSLVG-KTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 161 (311)
Q Consensus 85 ~g~~~pdf~l-~~~g~~~v~l~~~~g-k~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~ 161 (311)
+|..+|+|.+ +.+|+ .+++++++| |+++|+|| ++||+.|...+|.|+++++++.++ +++|++|+.|.
T Consensus 3 ~G~~~p~~~l~~~~g~-~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~v~vi~vs~d~ 72 (149)
T cd03018 3 VGDKAPDFELPDQNGQ-EVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA---------GAEVLGISVDS 72 (149)
T ss_pred CCCcCCCcEecCCCCC-EEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC---------CCEEEEecCCC
Confidence 5889999999 88999 999999999 99988888 999999999999999999999865 79999999875
Q ss_pred CHHHHHHHHhcCCCcccccCchhH--HHHHHhCCCCc----c--ceEEEECCCCcEEEec
Q 021494 162 DQTSFESYFGTMPWLALPFGDPTI--KELTKYFDVQG----I--PCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 162 ~~~~~~~~~~~~~~~~~p~~~d~~--~~l~~~~~v~~----~--Pt~vlid~~G~iv~~~ 213 (311)
.+..+++.++++ +.+|+..|.. .++.+.|++.. + |+++|||++|+|++.+
T Consensus 73 -~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~ 130 (149)
T cd03018 73 -PFSLRAWAEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAW 130 (149)
T ss_pred -HHHHHHHHHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEE
Confidence 456778887776 5778777765 88999999973 3 4899999999999983
No 26
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.80 E-value=4.4e-19 Score=144.54 Aligned_cols=113 Identities=27% Similarity=0.342 Sum_probs=102.0
Q ss_pred CCCCeEe-eCCCCceeeccccCCCEEEEEEe-cCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHH
Q 021494 88 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTS 165 (311)
Q Consensus 88 ~~pdf~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~ 165 (311)
++|+|.+ +.+|+ .+++++++||+++|+|| ++||+.|..+++.|.++++++.++ +++||+|+.|. .+.
T Consensus 2 ~~p~f~l~~~~g~-~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~---------~~~vv~is~d~-~~~ 70 (140)
T cd03017 2 KAPDFTLPDQDGE-TVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL---------GAVVIGVSPDS-VES 70 (140)
T ss_pred CCCCccccCCCCC-EEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC---------CCEEEEEcCCC-HHH
Confidence 5799999 89999 99999999999999999 589999999999999999999865 79999999985 467
Q ss_pred HHHHHhcCCCcccccCchhHHHHHHhCCCCcc---------ceEEEECCCCcEEEe
Q 021494 166 FESYFGTMPWLALPFGDPTIKELTKYFDVQGI---------PCLVIIGPEGKTVTK 212 (311)
Q Consensus 166 ~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~---------Pt~vlid~~G~iv~~ 212 (311)
+.++.+.++ +.+|+..|....+.+.||+... |+++|||++|+|+..
T Consensus 71 ~~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 71 HAKFAEKYG-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred HHHHHHHhC-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence 888888776 5788888888899999999988 999999999999988
No 27
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.80 E-value=7.7e-19 Score=150.22 Aligned_cols=120 Identities=18% Similarity=0.266 Sum_probs=99.6
Q ss_pred HhcCCCCCeEe----eCCCCceeeccccCCCEEEEEEe-cCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEe
Q 021494 84 LLTNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 158 (311)
Q Consensus 84 ~~g~~~pdf~l----~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs 158 (311)
.+|.++|+|.. +.+.. .+++++++||+++|+|| +.||+.|..+++.|.+++++|.++ +++|++||
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~-~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~---------g~~vigIS 72 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFI-EVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL---------GVDVYSVS 72 (187)
T ss_pred ccCCcCCCcEEEEEeCCcce-EEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC---------CCEEEEEe
Confidence 47999999998 34445 77888999999999999 999999999999999999999865 89999999
Q ss_pred cCCCH--HHHHHHHhcCCCcccccCchhHHHHHHhCCC----Ccc--ceEEEECCCCcEEEec
Q 021494 159 TDRDQ--TSFESYFGTMPWLALPFGDPTIKELTKYFDV----QGI--PCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 159 ~d~~~--~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v----~~~--Pt~vlid~~G~iv~~~ 213 (311)
.|... ..|.+......-+.+|+..|.+.++++.||+ .++ |++||||++|+|++..
T Consensus 73 ~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~ 135 (187)
T PRK10382 73 TDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE 135 (187)
T ss_pred CCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEE
Confidence 98743 3444433332346788889989999999999 356 9999999999999884
No 28
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.79 E-value=5.6e-19 Score=151.01 Aligned_cols=117 Identities=19% Similarity=0.260 Sum_probs=91.5
Q ss_pred cCCCCCeEe-eCCCCceeeccccCCCEE-EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC--
Q 021494 86 TNHDRGYLL-GHPPDEKVPVSSLVGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-- 161 (311)
Q Consensus 86 g~~~pdf~l-~~~g~~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~-- 161 (311)
+..+|+|++ +.+|+ .+++++++||++ |+.|||+||++|+.++|.|++++++|+++ +++|++|++|.
T Consensus 17 ~~~~p~f~l~d~~G~-~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~---------gv~vv~vs~~~~~ 86 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQ-LVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ---------GLEILAFPCNQFM 86 (183)
T ss_pred CCcccceEeEcCCCC-EEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC---------CcEEEEEeccccc
Confidence 467899999 89999 999999999964 56679999999999999999999999865 79999999752
Q ss_pred -----CHHHHHHHHh-cCCCcccccCch--hH----HHHHH------------hCCCCccce---EEEECCCCcEEEec
Q 021494 162 -----DQTSFESYFG-TMPWLALPFGDP--TI----KELTK------------YFDVQGIPC---LVIIGPEGKTVTKQ 213 (311)
Q Consensus 162 -----~~~~~~~~~~-~~~~~~~p~~~d--~~----~~l~~------------~~~v~~~Pt---~vlid~~G~iv~~~ 213 (311)
+.++..+++. +++ +.+|+..| .+ ..+.+ .+++.++|+ +||||++|+|+.++
T Consensus 87 ~~~~~~~~~~~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~ 164 (183)
T PTZ00256 87 EQEPWDEPEIKEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF 164 (183)
T ss_pred ccCCCCHHHHHHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence 3467778875 444 56776532 11 12221 246779994 69999999999984
No 29
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.2e-18 Score=141.37 Aligned_cols=117 Identities=20% Similarity=0.262 Sum_probs=104.4
Q ss_pred hcCCCCCeEe-eCCCCceeeccccCCCEEEEEEe-cCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCC
Q 021494 85 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 162 (311)
Q Consensus 85 ~g~~~pdf~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~ 162 (311)
+|+++|||+| +.+|+ .++|++++||+|||||| ..++|.|..++..+++.+.++.+. +.+|++||.|..
T Consensus 6 ~G~~aPdF~Lp~~~g~-~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~---------~a~V~GIS~Ds~ 75 (157)
T COG1225 6 VGDKAPDFELPDQDGE-TVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL---------GAVVLGISPDSP 75 (157)
T ss_pred CCCcCCCeEeecCCCC-EEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC---------CCEEEEEeCCCH
Confidence 6899999999 99999 99999999999999999 589999999999999999999975 899999999864
Q ss_pred HHHHHHHHhcCCCcccccCchhHHHHHHhCCCC------------ccceEEEECCCCcEEEec
Q 021494 163 QTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~------------~~Pt~vlid~~G~iv~~~ 213 (311)
...++|..+++ +.||.+.|...++++.|||- ..+++||||++|+|+...
T Consensus 76 -~~~~~F~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~ 136 (157)
T COG1225 76 -KSHKKFAEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW 136 (157)
T ss_pred -HHHHHHHHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe
Confidence 45666666666 77999999999999999983 458999999999999873
No 30
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.78 E-value=1.8e-18 Score=148.37 Aligned_cols=121 Identities=21% Similarity=0.291 Sum_probs=98.7
Q ss_pred HhcCCCCCeEe-e-CCCC-ceeeccccCCCEEEEEEe-cCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEec
Q 021494 84 LLTNHDRGYLL-G-HPPD-EKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST 159 (311)
Q Consensus 84 ~~g~~~pdf~l-~-~~g~-~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~ 159 (311)
++|..+|+|++ + .+|+ ..+++++++||++||+|| ++||++|..+++.|+++++++.++ +++|++||.
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~---------gv~vi~VS~ 73 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL---------GVEVYSVST 73 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc---------CCcEEEEeC
Confidence 57899999999 5 4564 157888999999999999 999999999999999999999865 899999999
Q ss_pred CCCH--HHHHHHHhcCCCcccccCchhHHHHHHhCCCC------ccceEEEECCCCcEEEec
Q 021494 160 DRDQ--TSFESYFGTMPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 160 d~~~--~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~------~~Pt~vlid~~G~iv~~~ 213 (311)
|... +.|.+......-+.+|+..|....+++.|||. ..|++||||++|+|+...
T Consensus 74 D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 74 DTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred CCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 9743 23333332222356788888888999999986 469999999999999874
No 31
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.78 E-value=2e-18 Score=149.81 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=98.6
Q ss_pred hcCCCCCeEeeCCCCceeeccccCCCEEEE-EEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCH
Q 021494 85 LTNHDRGYLLGHPPDEKVPVSSLVGKTVGL-YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 163 (311)
Q Consensus 85 ~g~~~pdf~l~~~g~~~v~l~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~ 163 (311)
+|..+|+|.+...++ .+++++++||+++| +||++||++|..+++.|.+++++|+++ +++|++||+|...
T Consensus 4 vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~---------~~~vi~vS~D~~~ 73 (202)
T PRK13190 4 LGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL---------GVELVGLSVDSIY 73 (202)
T ss_pred CCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEEeCCCHH
Confidence 689999999943444 69999999997766 689999999999999999999999875 8999999999754
Q ss_pred --HHHHHHH-hcCC-CcccccCchhHHHHHHhCCCC------ccceEEEECCCCcEEEec
Q 021494 164 --TSFESYF-GTMP-WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 164 --~~~~~~~-~~~~-~~~~p~~~d~~~~l~~~~~v~------~~Pt~vlid~~G~iv~~~ 213 (311)
.+|.+.+ ...+ .+.+|+..|.++++++.||+. .+|++||||++|+|+...
T Consensus 74 ~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~ 133 (202)
T PRK13190 74 SHIAWLRDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMI 133 (202)
T ss_pred HHHHHHHhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEE
Confidence 3454433 3333 257899999899999999994 589999999999999774
No 32
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.76 E-value=4.8e-18 Score=132.02 Aligned_cols=111 Identities=29% Similarity=0.515 Sum_probs=100.1
Q ss_pred CeEe-eCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCC-HHHHHH
Q 021494 91 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD-QTSFES 168 (311)
Q Consensus 91 df~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~-~~~~~~ 168 (311)
+|.+ +.+|+ .+++++++||+++|+||++||++|+..++.|.++.+++.+ .++.+++|++|.+ .+.+++
T Consensus 1 ~~~~~~~~g~-~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~---------~~~~~~~v~~d~~~~~~~~~ 70 (116)
T cd02966 1 DFSLPDLDGK-PVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKD---------DGVEVVGVNVDDDDPAAVKA 70 (116)
T ss_pred CccccCCCCC-EeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCC---------CCeEEEEEECCCCCHHHHHH
Confidence 3566 78888 9999999999999999999999999999999999999863 3799999999987 999999
Q ss_pred HHhcCCCcccccCchhHHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 169 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 169 ~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
++..++ ..+++..+....+.+.|++.++|+++|+|++|+++.+
T Consensus 71 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 71 FLKKYG-ITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred HHHHcC-CCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence 999887 6777777767899999999999999999999999976
No 33
>PRK15000 peroxidase; Provisional
Probab=99.76 E-value=4.8e-18 Score=147.09 Aligned_cols=120 Identities=17% Similarity=0.223 Sum_probs=97.3
Q ss_pred HhcCCCCCeEe-eC--CCCcee---ecccc-CCCEEEEEEec-CCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 021494 84 LLTNHDRGYLL-GH--PPDEKV---PVSSL-VGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 155 (311)
Q Consensus 84 ~~g~~~pdf~l-~~--~g~~~v---~l~~~-~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv 155 (311)
++|.++|+|.+ +. +|+ .+ +++++ +||+++|+||+ .||+.|..+++.|++++++|.++ +++|+
T Consensus 3 ~vg~~aPdF~~~~~~~~g~-~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~---------g~~vi 72 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGE-IVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR---------GVEVV 72 (200)
T ss_pred cCCCcCCCCEeecccCCCc-eeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEE
Confidence 47999999999 43 344 43 44444 79999999998 59999999999999999999876 89999
Q ss_pred EEecCCCH--HHHHHHH-hcCC--CcccccCchhHHHHHHhCCCC------ccceEEEECCCCcEEEec
Q 021494 156 FVSTDRDQ--TSFESYF-GTMP--WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 156 ~Vs~d~~~--~~~~~~~-~~~~--~~~~p~~~d~~~~l~~~~~v~------~~Pt~vlid~~G~iv~~~ 213 (311)
+||+|... ..|.+.. +..+ -+.+|+..|...++++.||+. ++|++||||++|+|+...
T Consensus 73 gvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~ 141 (200)
T PRK15000 73 GVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQV 141 (200)
T ss_pred EEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEE
Confidence 99999753 4454433 2222 257888888889999999997 799999999999999873
No 34
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.76 E-value=6.9e-18 Score=150.67 Aligned_cols=122 Identities=14% Similarity=0.141 Sum_probs=100.0
Q ss_pred HHhcCCCCCeEe-e-CCCC-ceeecccc-CCCEEEEEEe-cCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEE
Q 021494 83 NLLTNHDRGYLL-G-HPPD-EKVPVSSL-VGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 157 (311)
Q Consensus 83 ~~~g~~~pdf~l-~-~~g~-~~v~l~~~-~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~V 157 (311)
.++|+.+|+|.+ + .+|+ +.++++++ +||++||+|| ++||++|..+++.|++++++|.++ +++|++|
T Consensus 68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~---------gv~VigI 138 (261)
T PTZ00137 68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER---------GVKVLGV 138 (261)
T ss_pred ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC---------CCEEEEE
Confidence 468999999998 4 3443 16899998 8988888887 899999999999999999999876 8999999
Q ss_pred ecCCC--HHHHHHH-HhcC--CCcccccCchhHHHHHHhCCCC-----ccceEEEECCCCcEEEec
Q 021494 158 STDRD--QTSFESY-FGTM--PWLALPFGDPTIKELTKYFDVQ-----GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 158 s~d~~--~~~~~~~-~~~~--~~~~~p~~~d~~~~l~~~~~v~-----~~Pt~vlid~~G~iv~~~ 213 (311)
|.|.. ...|.+. .++. .-+.+|+..|.+.++++.||+. ..|++||||++|+|++..
T Consensus 139 S~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 139 SVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVA 204 (261)
T ss_pred ECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence 99983 3455543 2221 2367888888889999999995 589999999999999874
No 35
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.76 E-value=2.6e-18 Score=142.60 Aligned_cols=112 Identities=16% Similarity=0.191 Sum_probs=88.4
Q ss_pred CeEe-eCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecC-------CC
Q 021494 91 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD-------RD 162 (311)
Q Consensus 91 df~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d-------~~ 162 (311)
+|++ +.+|+ ++++++++||++||+|||+||++|+..+|.|++++++|+++ ++.|++|+.+ ++
T Consensus 4 ~f~l~~~~G~-~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~---------~~~v~~i~~~~~~~~~~d~ 73 (153)
T TIGR02540 4 SFEVKDARGR-TVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPS---------HFNVLAFPCNQFGESEPDS 73 (153)
T ss_pred cceeECCCCC-EecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC---------CeEEEEEeccccccCCCCC
Confidence 6788 89999 99999999999999999999999999999999999999865 8999999952 34
Q ss_pred HHHHHHHHhc-CCCcccccCch-----hHHHHHHhCC---CCccce----EEEECCCCcEEEec
Q 021494 163 QTSFESYFGT-MPWLALPFGDP-----TIKELTKYFD---VQGIPC----LVIIGPEGKTVTKQ 213 (311)
Q Consensus 163 ~~~~~~~~~~-~~~~~~p~~~d-----~~~~l~~~~~---v~~~Pt----~vlid~~G~iv~~~ 213 (311)
.+..++++++ ++ +.+|+..+ ........|. ..++|+ +||||++|+|+.+.
T Consensus 74 ~~~~~~f~~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~ 136 (153)
T TIGR02540 74 SKEIESFARRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFW 136 (153)
T ss_pred HHHHHHHHHHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEE
Confidence 5678888864 44 56776533 1111122232 246898 99999999999883
No 36
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.76 E-value=1e-17 Score=146.46 Aligned_cols=120 Identities=12% Similarity=0.114 Sum_probs=103.5
Q ss_pred HhcCCCCCeEe-eCCCCceeeccccCCCEE-EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC
Q 021494 84 LLTNHDRGYLL-GHPPDEKVPVSSLVGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 161 (311)
Q Consensus 84 ~~g~~~pdf~l-~~~g~~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~ 161 (311)
++|.++|+|.+ +.+|+ .+.+++++||++ |++||++|||+|..+++.|++++++|.++ +++||+||+|.
T Consensus 3 ~~Gd~aPdF~l~t~~G~-~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~---------gv~vigIS~D~ 72 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGV-KRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL---------NTELIGLSVDQ 72 (215)
T ss_pred CCCCCCCCCEeECCCCc-EecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEeCCC
Confidence 58999999999 78888 777899999975 67889999999999999999999999876 89999999998
Q ss_pred C--HHHHHHHHhcC--CCcccccCchhHHHHHHhCCCC-------ccceEEEECCCCcEEEec
Q 021494 162 D--QTSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 162 ~--~~~~~~~~~~~--~~~~~p~~~d~~~~l~~~~~v~-------~~Pt~vlid~~G~iv~~~ 213 (311)
. ...|.+++++. .-+.||+..|.+.++++.||+. ..|++||||++|+|+...
T Consensus 73 ~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~ 135 (215)
T PRK13599 73 VFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIM 135 (215)
T ss_pred HHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEE
Confidence 5 45677777653 1367888888888999999983 689999999999999873
No 37
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.75 E-value=1.8e-17 Score=143.65 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=99.3
Q ss_pred HhcCCCCCeEe-----eCCCCceeeccccCCCEEEEEEec-CCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEE
Q 021494 84 LLTNHDRGYLL-----GHPPDEKVPVSSLVGKTVGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFV 157 (311)
Q Consensus 84 ~~g~~~pdf~l-----~~~g~~~v~l~~~~gk~vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~V 157 (311)
.+|.++|+|.+ +.+|+ ++++++++||+++|+||+ .||+.|..+++.|.+++++|.++ +++||+|
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~-~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~---------g~~vv~I 76 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFK-KISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL---------NCEVLAC 76 (199)
T ss_pred ccCCcCCCCEeeccccCCCCc-EEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc---------CCEEEEE
Confidence 47999999995 35667 899999999999999995 88999999999999999999876 8999999
Q ss_pred ecCCCHHHHHHHHh--c---CCCcccccCchhHHHHHHhCCCC------ccceEEEECCCCcEEEec
Q 021494 158 STDRDQTSFESYFG--T---MPWLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 158 s~d~~~~~~~~~~~--~---~~~~~~p~~~d~~~~l~~~~~v~------~~Pt~vlid~~G~iv~~~ 213 (311)
|.|........... . ..-+.+|+..|.++++++.||+. .+|++||||++|+|+...
T Consensus 77 S~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~ 143 (199)
T PTZ00253 77 SMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQIT 143 (199)
T ss_pred eCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEE
Confidence 99976542221111 1 22367899999999999999985 469999999999999873
No 38
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.75 E-value=1.5e-17 Score=135.42 Aligned_cols=114 Identities=22% Similarity=0.261 Sum_probs=100.4
Q ss_pred CCCeEe-eCCCCceeeccccCCCEEEEEEe-cCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHH
Q 021494 89 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 166 (311)
Q Consensus 89 ~pdf~l-~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~ 166 (311)
+|+|.+ +.+|+ ++++++++||+++|+|| ++||++|...++.|.+++++++.+ ++.|++|+.|. .+..
T Consensus 2 ~p~f~l~~~~g~-~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~---------~~~~i~is~d~-~~~~ 70 (140)
T cd02971 2 APDFTLPATDGG-EVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG---------GAEVLGVSVDS-PFSH 70 (140)
T ss_pred CCCceeccCCCc-EEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEeCCC-HHHH
Confidence 689999 89999 99999999999999999 789999999999999999999754 79999999874 5567
Q ss_pred HHHHhcCCCcccccCchhHHHHHHhCCCCccc---------eEEEECCCCcEEEec
Q 021494 167 ESYFGTMPWLALPFGDPTIKELTKYFDVQGIP---------CLVIIGPEGKTVTKQ 213 (311)
Q Consensus 167 ~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P---------t~vlid~~G~iv~~~ 213 (311)
.++.++++-..+++..|....+.+.||+...| +++|||++|+|++++
T Consensus 71 ~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~ 126 (140)
T cd02971 71 KAWAEKEGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE 126 (140)
T ss_pred HHHHhcccCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence 78888774467888888788999999988665 899999999999984
No 39
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.75 E-value=1.3e-17 Score=136.21 Aligned_cols=116 Identities=24% Similarity=0.365 Sum_probs=96.9
Q ss_pred CCCCeEe-eCCCCceeeccccCCCEEEEEEecCCChh-hHhhhHHHHHHHHHHHhhhhhcCCCC-CCeEEEEEecCC---
Q 021494 88 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDAL-EDFEVVFVSTDR--- 161 (311)
Q Consensus 88 ~~pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~~~-~~~~vv~Vs~d~--- 161 (311)
.+|+|++ +.+|+ .+++++++||+++|+||++||++ |...++.|+++++++.++ + .++++++|+.|.
T Consensus 1 ~~p~f~l~~~~g~-~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~-------~~~~v~~v~vs~d~~~d 72 (142)
T cd02968 1 IGPDFTLTDQDGR-PVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGAD-------GGDDVQVVFISVDPERD 72 (142)
T ss_pred CCCceEEEcCCCC-EEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHh-------hcCceEEEEEEECCCCC
Confidence 3689999 89999 99999999999999999999997 999999999999999864 2 359999999985
Q ss_pred CHHHHHHHHhcCCCcccccCch---hHHHHHHhCCCCcc--------------ceEEEECCCCcEEEe
Q 021494 162 DQTSFESYFGTMPWLALPFGDP---TIKELTKYFDVQGI--------------PCLVIIGPEGKTVTK 212 (311)
Q Consensus 162 ~~~~~~~~~~~~~~~~~p~~~d---~~~~l~~~~~v~~~--------------Pt~vlid~~G~iv~~ 212 (311)
+.+.++++.++++ ..+++..+ ....+++.||+... |+++|||++|+|+..
T Consensus 73 ~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 73 TPEVLKAYAKAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred CHHHHHHHHHHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 3577888888775 44554443 34789999997543 579999999999986
No 40
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.74 E-value=3e-17 Score=142.55 Aligned_cols=118 Identities=12% Similarity=0.159 Sum_probs=95.8
Q ss_pred hcCCCCCeEe-eCCCCceeeccccCC-CEE-EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC
Q 021494 85 LTNHDRGYLL-GHPPDEKVPVSSLVG-KTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 161 (311)
Q Consensus 85 ~g~~~pdf~l-~~~g~~~v~l~~~~g-k~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~ 161 (311)
+|..+|+|.+ +.+| .+++++++| |++ |++||++|||.|..+++.|++++++|+++ +++|++||+|.
T Consensus 1 vG~~aP~F~~~~~~g--~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~---------gv~vigvS~D~ 69 (203)
T cd03016 1 LGDTAPNFEADTTHG--PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKR---------NVKLIGLSVDS 69 (203)
T ss_pred CcCCCCCeEEecCCC--cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc---------CCEEEEEECCC
Confidence 5889999999 5554 589999998 754 55888999999999999999999999876 89999999997
Q ss_pred CH--HHHHHHHhcC--CCcccccCchhHHHHHHhCCCC--------ccceEEEECCCCcEEEec
Q 021494 162 DQ--TSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ--------GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 162 ~~--~~~~~~~~~~--~~~~~p~~~d~~~~l~~~~~v~--------~~Pt~vlid~~G~iv~~~ 213 (311)
.. .+|.+.+..+ .-+.||+..|.+..+++.||+. ..|++||||++|+|+...
T Consensus 70 ~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~ 133 (203)
T cd03016 70 VESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLIL 133 (203)
T ss_pred HHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEE
Confidence 43 3444443332 2367888888899999999985 245799999999999874
No 41
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.74 E-value=2.2e-17 Score=144.43 Aligned_cols=119 Identities=11% Similarity=0.169 Sum_probs=99.1
Q ss_pred HhcCCCCCeEe-eCCCCceeec-cccCCCEEEE-EEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecC
Q 021494 84 LLTNHDRGYLL-GHPPDEKVPV-SSLVGKTVGL-YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 160 (311)
Q Consensus 84 ~~g~~~pdf~l-~~~g~~~v~l-~~~~gk~vll-~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d 160 (311)
.+|..+|+|.+ +.+|+ +.+ ++++||+++| +||++||+.|..+++.|.+++++|.++ +++|++||+|
T Consensus 8 ~iG~~aPdF~l~~~~G~--~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~---------g~~VigvS~D 76 (215)
T PRK13191 8 LIGEKFPEMEVITTHGK--IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL---------NTELIGLSVD 76 (215)
T ss_pred cCCCcCCCCEeecCCCC--EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC---------CCEEEEEECC
Confidence 47999999999 67776 555 5589997665 778999999999999999999999876 8999999999
Q ss_pred CCHH--HHHHHHhcC-C-CcccccCchhHHHHHHhCCCC-------ccceEEEECCCCcEEEec
Q 021494 161 RDQT--SFESYFGTM-P-WLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 161 ~~~~--~~~~~~~~~-~-~~~~p~~~d~~~~l~~~~~v~-------~~Pt~vlid~~G~iv~~~ 213 (311)
.... +|.++.++. . -+.+|+..|.+.++++.||+. ..|++||||++|+|+...
T Consensus 77 s~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 140 (215)
T PRK13191 77 SNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLIL 140 (215)
T ss_pred CHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEE
Confidence 8653 577766532 1 367888999889999999973 479999999999999874
No 42
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.73 E-value=1.5e-17 Score=132.52 Aligned_cols=106 Identities=22% Similarity=0.366 Sum_probs=93.4
Q ss_pred CCeEe-eCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCC-HHHHH
Q 021494 90 RGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD-QTSFE 167 (311)
Q Consensus 90 pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~-~~~~~ 167 (311)
|+|.+ +.+|+ .+++++++||+++|+||++||++|+.++|.|.+++++ +.+++|++|.+ .+.+.
T Consensus 1 p~f~l~~~~g~-~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~--------------~~~i~i~~~~~~~~~~~ 65 (123)
T cd03011 1 PLFTATTLDGE-QFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD--------------YPVVSVALRSGDDGAVA 65 (123)
T ss_pred CCceeecCCCC-EeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh--------------CCEEEEEccCCCHHHHH
Confidence 68888 89998 9999999999999999999999999999999988765 34788888764 78888
Q ss_pred HHHhcCCCcccccCchhHHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 168 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 168 ~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
++.++++ +.+|+..|.+.++.+.|+|.++|+++|+|++| ++.+
T Consensus 66 ~~~~~~~-~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~ 108 (123)
T cd03011 66 RFMQKKG-YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFV 108 (123)
T ss_pred HHHHHcC-CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEE
Confidence 8888877 67887777778999999999999999999999 7766
No 43
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.73 E-value=2.2e-17 Score=135.57 Aligned_cols=114 Identities=18% Similarity=0.353 Sum_probs=95.4
Q ss_pred CCCCeEe-eCCCCceeeccccC-CC-EEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHH
Q 021494 88 HDRGYLL-GHPPDEKVPVSSLV-GK-TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 164 (311)
Q Consensus 88 ~~pdf~l-~~~g~~~v~l~~~~-gk-~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~ 164 (311)
.+|+|++ +.+|+ .++++++. +| ++|++||++||++|+.++|.|+++++++.++ ++.||+|+.|...
T Consensus 1 ~~p~f~l~~~~g~-~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~---------~v~vv~V~~~~~~- 69 (149)
T cd02970 1 TAPDFELPDAGGE-TVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDAL---------GVELVAVGPESPE- 69 (149)
T ss_pred CCCCccccCCCCC-EEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc---------CeEEEEEeCCCHH-
Confidence 3689999 89999 99999875 45 4555557999999999999999999999865 7999999988754
Q ss_pred HHHHHHhcCCCcccccCchhHHHHHHhCCCC-----------------------------ccceEEEECCCCcEEEec
Q 021494 165 SFESYFGTMPWLALPFGDPTIKELTKYFDVQ-----------------------------GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 165 ~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~-----------------------------~~Pt~vlid~~G~iv~~~ 213 (311)
....+.+... +.+|+..|.+..+.+.||+. .+|++||||++|+|++.+
T Consensus 70 ~~~~~~~~~~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 70 KLEAFDKGKF-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred HHHHHHHhcC-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 3345666554 67899888889999999994 799999999999999874
No 44
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.72 E-value=1.8e-17 Score=174.29 Aligned_cols=117 Identities=22% Similarity=0.300 Sum_probs=102.4
Q ss_pred hcCCCCCeEe-e--CCCCceeec-cccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEec-
Q 021494 85 LTNHDRGYLL-G--HPPDEKVPV-SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST- 159 (311)
Q Consensus 85 ~g~~~pdf~l-~--~~g~~~v~l-~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~- 159 (311)
.|.++|+|.. + .+|+ ++++ ++++||+|||+|||+||++|+.++|.|++++++|+++ ++.||+|+.
T Consensus 393 ~g~~~p~f~~~~~~~~g~-~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~---------~~~vvgV~~~ 462 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNTA-PLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ---------PFTVVGVHSA 462 (1057)
T ss_pred cCCcCCCCcccccccCCc-cccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC---------CeEEEEEecc
Confidence 5889999987 3 6788 9998 6899999999999999999999999999999999854 799999974
Q ss_pred --CC--CHHHHHHHHhcCCCcccccCchhHHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 160 --DR--DQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 160 --d~--~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
|. +.+++++++.+++ +.+|+..|....+.+.|+|.++|+++|||++|+++.+
T Consensus 463 ~~D~~~~~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 463 KFDNEKDLEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred cccccccHHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEE
Confidence 33 4678888888777 5677777777899999999999999999999999988
No 45
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.72 E-value=5.7e-17 Score=137.41 Aligned_cols=133 Identities=8% Similarity=-0.006 Sum_probs=97.0
Q ss_pred HhcCCCCCeEe-eC-----C-----CCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCe
Q 021494 84 LLTNHDRGYLL-GH-----P-----PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDF 152 (311)
Q Consensus 84 ~~g~~~pdf~l-~~-----~-----g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~ 152 (311)
.+|.+.|...+ +. + .+ .++.++++||+.+|+|||+||++|+.+.|.|.++.+ + ++
T Consensus 24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~-~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~---------~~ 89 (184)
T TIGR01626 24 QVEQSVPSVGVSEYGEIVLSGKDTVYQ-PWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----A---------KF 89 (184)
T ss_pred hcCCcCCceEecCCceEEEcCCcccce-eccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----c---------CC
Confidence 36778887765 22 2 23 667788999999999999999999999999998832 2 57
Q ss_pred EE------EEEecCCCHHHHHHHHh----cCCCccc---ccCchhHHHHHHhCCCCccceE-EEECCCCcEEEeccchhh
Q 021494 153 EV------VFVSTDRDQTSFESYFG----TMPWLAL---PFGDPTIKELTKYFDVQGIPCL-VIIGPEGKTVTKQGRNLI 218 (311)
Q Consensus 153 ~v------v~Vs~d~~~~~~~~~~~----~~~~~~~---p~~~d~~~~l~~~~~v~~~Pt~-vlid~~G~iv~~~g~~~~ 218 (311)
.+ ++|+.|++......|++ +.. ..+ ++..|....+...|++.++|++ ||||++|+|+.+
T Consensus 90 ~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~-~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~------ 162 (184)
T TIGR01626 90 PPVKYQTTTIINADDAIVGTGMFVKSSAKKGK-KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFV------ 162 (184)
T ss_pred CcccccceEEEECccchhhHHHHHHHHHHHhc-ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEE------
Confidence 77 99999986554444433 222 233 3666667789999999999988 899999999998
Q ss_pred hcccccCCCCcHHHHHHHHHHHHH
Q 021494 219 NLYQENAYPFTEAKLEFLEKQMEE 242 (311)
Q Consensus 219 ~~~g~~~~p~~~~~i~~L~~~~~~ 242 (311)
..|. .+++.++++...+++
T Consensus 163 -~~G~----l~~ee~e~~~~li~~ 181 (184)
T TIGR01626 163 -KEGA----LSDSDIQTVISLVNG 181 (184)
T ss_pred -EeCC----CCHHHHHHHHHHHHH
Confidence 4442 344555555555544
No 46
>PRK13189 peroxiredoxin; Provisional
Probab=99.71 E-value=1.1e-16 Score=140.70 Aligned_cols=119 Identities=13% Similarity=0.198 Sum_probs=96.6
Q ss_pred HhcCCCCCeEe-eCCCCceeeccc-cCCCEEE-EEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecC
Q 021494 84 LLTNHDRGYLL-GHPPDEKVPVSS-LVGKTVG-LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 160 (311)
Q Consensus 84 ~~g~~~pdf~l-~~~g~~~v~l~~-~~gk~vl-l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d 160 (311)
.+|..+|+|++ +.+|. +++++ ++||+++ ++||++||+.|..+++.|++++++|+++ +++|++||+|
T Consensus 10 ~vG~~aPdF~~~~~~g~--~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~---------~v~VigvS~D 78 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP--IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL---------NTELIGLSID 78 (222)
T ss_pred cCCCcCCCcEeEcCCCC--EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc---------CCEEEEEECC
Confidence 47999999999 66664 77776 5999655 5778999999999999999999999875 8999999999
Q ss_pred CCH--HHHHHHHhc-CC-CcccccCchhHHHHHHhCCCC-------ccceEEEECCCCcEEEec
Q 021494 161 RDQ--TSFESYFGT-MP-WLALPFGDPTIKELTKYFDVQ-------GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 161 ~~~--~~~~~~~~~-~~-~~~~p~~~d~~~~l~~~~~v~-------~~Pt~vlid~~G~iv~~~ 213 (311)
... .+|.+.+.+ .+ -+.||+..|....+++.||+. .+|++||||++|+|+...
T Consensus 79 ~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~ 142 (222)
T PRK13189 79 QVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAIL 142 (222)
T ss_pred CHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEE
Confidence 754 345554432 22 267888888889999999985 579999999999998773
No 47
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.69 E-value=1.1e-16 Score=134.84 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=79.9
Q ss_pred CCCCCeEeeCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHH
Q 021494 87 NHDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSF 166 (311)
Q Consensus 87 ~~~pdf~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~ 166 (311)
.+.|+|.+ .+|+ .+++++++ +|+||++||++|++++|.|++++++| +++|++|++|.+.+
T Consensus 53 ~~~~~f~l-~dG~-~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~------------g~~Vi~Vs~D~~~~-- 112 (181)
T PRK13728 53 PAPRWFRL-SNGR-QVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY------------GFSVFPYTLDGQGD-- 112 (181)
T ss_pred CCCCccCC-CCCC-EeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc------------CCEEEEEEeCCCCC--
Confidence 45678886 4888 99999997 77799999999999999999999886 37899999986531
Q ss_pred HHHHhcCCCcccccCch-hHHHHHHhCCC--CccceEEEECCCCcEEE
Q 021494 167 ESYFGTMPWLALPFGDP-TIKELTKYFDV--QGIPCLVIIGPEGKTVT 211 (311)
Q Consensus 167 ~~~~~~~~~~~~p~~~d-~~~~l~~~~~v--~~~Pt~vlid~~G~iv~ 211 (311)
..||...+ ....+.+.|++ .++|++||||++|+++.
T Consensus 113 ---------~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 ---------TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred ---------CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 56777653 45678889995 69999999999999974
No 48
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.64 E-value=2.8e-15 Score=122.91 Aligned_cols=77 Identities=25% Similarity=0.476 Sum_probs=67.1
Q ss_pred cccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchh
Q 021494 105 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 184 (311)
Q Consensus 105 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~ 184 (311)
...+||+++|+|||+||++|+.+.|.|.++++++.. .+.|+.|++|.+.
T Consensus 16 a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~----------~~~~v~v~vd~~~--------------------- 64 (142)
T cd02950 16 ALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD----------QVNFVMLNVDNPK--------------------- 64 (142)
T ss_pred HHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc----------CeeEEEEEcCCcc---------------------
Confidence 334789999999999999999999999999998864 4788999888653
Q ss_pred HHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 185 IKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
...+.+.|+|.++|+++|+|++|+++.+
T Consensus 65 ~~~~~~~~~V~~iPt~v~~~~~G~~v~~ 92 (142)
T cd02950 65 WLPEIDRYRVDGIPHFVFLDREGNEEGQ 92 (142)
T ss_pred cHHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 3467889999999999999999999987
No 49
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.5e-15 Score=124.06 Aligned_cols=120 Identities=19% Similarity=0.323 Sum_probs=104.5
Q ss_pred HHhcCCCCCeEe-eC-CC---CceeeccccCCCEEEEEEe-cCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEE
Q 021494 83 NLLTNHDRGYLL-GH-PP---DEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVF 156 (311)
Q Consensus 83 ~~~g~~~pdf~l-~~-~g---~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~ 156 (311)
.++|.++|+|+. .. .| . +++++++.||+++|+|| +...+.|..++..++++|++|+++ +++|++
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~-~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~---------g~eVig 72 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFE-EITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR---------GVEVIG 72 (194)
T ss_pred cccCCcCCCcEEEEEecCceee-EEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc---------CCEEEE
Confidence 468999999999 33 44 3 79999999999999999 789999999999999999999987 899999
Q ss_pred EecCC--CHHHHHHHHhcCCC---cccccCchhHHHHHHhCCCC------ccceEEEECCCCcEEEe
Q 021494 157 VSTDR--DQTSFESYFGTMPW---LALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 157 Vs~d~--~~~~~~~~~~~~~~---~~~p~~~d~~~~l~~~~~v~------~~Pt~vlid~~G~iv~~ 212 (311)
||+|. +..+|.+...+... +.+|+..|.++++++.||+. +...+||||++|+|+..
T Consensus 73 vS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~ 139 (194)
T COG0450 73 VSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHI 139 (194)
T ss_pred EecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEE
Confidence 99998 45788888765543 78999999999999999984 46789999999999876
No 50
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.61 E-value=6.4e-15 Score=114.09 Aligned_cols=74 Identities=19% Similarity=0.386 Sum_probs=63.4
Q ss_pred cCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHH
Q 021494 107 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 186 (311)
Q Consensus 107 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 186 (311)
.+||+|+|+|||+||++|+.+.|.|.++++++. ++.++.|+.|.+.+ ..
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~-----------~v~~~~vd~d~~~~--------------------~~ 61 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN-----------DVVFLLVNGDENDS--------------------TM 61 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----------CCEEEEEECCCChH--------------------HH
Confidence 468999999999999999999999999998872 47788888776431 34
Q ss_pred HHHHhCCCCccceEEEECCCCcEEEe
Q 021494 187 ELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 187 ~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
.+++.|+|.++||++|+ ++|+++.+
T Consensus 62 ~l~~~~~V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 62 ELCRREKIIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred HHHHHcCCCcCCEEEEE-eCCeEEEE
Confidence 78999999999998888 89999877
No 51
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.60 E-value=8.5e-15 Score=124.67 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=69.8
Q ss_pred CCCCeEe-eCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecC------
Q 021494 88 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD------ 160 (311)
Q Consensus 88 ~~pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d------ 160 (311)
.+++|++ +.+|+ .+++++++||+|||.|||+||++|. .++.|++++++|+++ +++|++|+++
T Consensus 4 ~~~~f~~~~~~G~-~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~---------gl~Vlg~p~nqf~~qe 72 (183)
T PRK10606 4 SILTTVVTTIDGE-VTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ---------GFVVLGFPCNQFLGQE 72 (183)
T ss_pred CccCcEeECCCCC-EEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC---------CeEEEEeeccccccCC
Confidence 4678998 89999 9999999999999999999999996 699999999999865 8999999986
Q ss_pred -CCHHHHHHHHh-cCCCcccccC
Q 021494 161 -RDQTSFESYFG-TMPWLALPFG 181 (311)
Q Consensus 161 -~~~~~~~~~~~-~~~~~~~p~~ 181 (311)
.+.++.+++.+ +++ +.+|+.
T Consensus 73 ~~~~~ei~~f~~~~~g-~~Fpv~ 94 (183)
T PRK10606 73 PGSDEEIKTYCRTTWG-VTFPMF 94 (183)
T ss_pred CCCHHHHHHHHHHccC-CCceeE
Confidence 35577888886 454 556654
No 52
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.57 E-value=2.7e-14 Score=111.75 Aligned_cols=72 Identities=17% Similarity=0.312 Sum_probs=63.1
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
.+++|+|+|||+||++|+.+.|.|.++.+++.+. +.++-|++|. ..+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~----------v~f~kVDvD~-----------------------~~~ 59 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF----------AVIYLVDIDE-----------------------VPD 59 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc----------eEEEEEECCC-----------------------CHH
Confidence 4579999999999999999999999999998743 5677777776 448
Q ss_pred HHHhCCCCccceEEEECCCCcEEEec
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~~ 213 (311)
+++.|+|.++||++++ ++|+.+.+.
T Consensus 60 la~~~~V~~iPTf~~f-k~G~~v~~~ 84 (114)
T cd02954 60 FNKMYELYDPPTVMFF-FRNKHMKID 84 (114)
T ss_pred HHHHcCCCCCCEEEEE-ECCEEEEEE
Confidence 9999999999999999 899999884
No 53
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.54 E-value=5e-14 Score=116.63 Aligned_cols=86 Identities=17% Similarity=0.271 Sum_probs=62.0
Q ss_pred CCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcc
Q 021494 98 PDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA 177 (311)
Q Consensus 98 g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~ 177 (311)
|+ .++++ +..+|+|||+||++|++++|.|++++++++ +.|++|++|.... ..
T Consensus 44 G~-~~~l~----~~~lvnFWAsWCppCr~e~P~L~~l~~~~~------------~~Vi~Vs~d~~~~-----------~~ 95 (153)
T TIGR02738 44 GR-HANQD----DYALVFFYQSTCPYCHQFAPVLKRFSQQFG------------LPVYAFSLDGQGL-----------TG 95 (153)
T ss_pred ch-hhhcC----CCEEEEEECCCChhHHHHHHHHHHHHHHcC------------CcEEEEEeCCCcc-----------cc
Confidence 44 55554 456999999999999999999999998763 6799999986531 12
Q ss_pred cccCchhHHH-HHHhC---CCCccceEEEECCCCcEEE
Q 021494 178 LPFGDPTIKE-LTKYF---DVQGIPCLVIIGPEGKTVT 211 (311)
Q Consensus 178 ~p~~~d~~~~-l~~~~---~v~~~Pt~vlid~~G~iv~ 211 (311)
+|...+.... +...| ++.++|+++|||++|+++.
T Consensus 96 fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 96 FPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred cccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 3322221222 34456 8899999999999988654
No 54
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.54 E-value=4.5e-14 Score=117.50 Aligned_cols=117 Identities=18% Similarity=0.220 Sum_probs=96.1
Q ss_pred hcCCCCCeEe-eCC---CCceeeccc-cCCCEEEEEEe-cCCChhhHhh-hHHHHHHHHHHHhhhhhcCCCCCCe-EEEE
Q 021494 85 LTNHDRGYLL-GHP---PDEKVPVSS-LVGKTVGLYFS-ARWCIPCEKF-MPKLLSIYQKIKQNLVEKGDALEDF-EVVF 156 (311)
Q Consensus 85 ~g~~~pdf~l-~~~---g~~~v~l~~-~~gk~vll~F~-a~wC~~C~~~-~p~l~~l~~~~~~~~~~~~~~~~~~-~vv~ 156 (311)
+|..+|+|.+ +.+ |+ .+++++ ++||+++|+|+ +.|||.|..+ ++.+++.++++.+. ++ .|++
T Consensus 1 vG~~aPdF~l~~~~~~~g~-~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~---------g~~~V~~ 70 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPN-PVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK---------GVDEVIC 70 (155)
T ss_pred CCCcCCCeEeeeeccCCCc-eeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC---------CCCEEEE
Confidence 4789999999 664 88 999999 68887666666 7999999999 99999999999865 77 6999
Q ss_pred EecCCCHHHHHHHHhcCCC-cccccCchhHHHHHHhCCCC-----------ccceEEEECCCCcEEEec
Q 021494 157 VSTDRDQTSFESYFGTMPW-LALPFGDPTIKELTKYFDVQ-----------GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 157 Vs~d~~~~~~~~~~~~~~~-~~~p~~~d~~~~l~~~~~v~-----------~~Pt~vlid~~G~iv~~~ 213 (311)
||.|... ..+++..++.. ..+|++.|.+.++++.||+. ..++++||| +|+|++..
T Consensus 71 iS~D~~~-~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~ 137 (155)
T cd03013 71 VSVNDPF-VMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLF 137 (155)
T ss_pred EECCCHH-HHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEE
Confidence 9998754 35556666664 47899999899999999983 147889999 69999874
No 55
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.8e-14 Score=116.42 Aligned_cols=70 Identities=26% Similarity=0.575 Sum_probs=62.9
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
+.+|+|+|||+||+||+.+.|.|.++..+|.++ +.+.-|++|.. .++
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~----------~k~~kvdtD~~-----------------------~el 107 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK----------FKLYKVDTDEH-----------------------PEL 107 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe----------EEEEEEccccc-----------------------cch
Confidence 478999999999999999999999999999764 77888877764 489
Q ss_pred HHhCCCCccceEEEECCCCcEEEe
Q 021494 189 TKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+..|+|.++||++++ ++|+.+.+
T Consensus 108 a~~Y~I~avPtvlvf-knGe~~d~ 130 (150)
T KOG0910|consen 108 AEDYEISAVPTVLVF-KNGEKVDR 130 (150)
T ss_pred HhhcceeeeeEEEEE-ECCEEeee
Confidence 999999999999999 88998876
No 56
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.53 E-value=7.4e-14 Score=107.90 Aligned_cols=71 Identities=14% Similarity=0.275 Sum_probs=60.8
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
.|++++|+|||+||++|+.+.|.|.++++++++. .+.++.|+.| .. +
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~---------~~~~~~vd~d-~~-----------------------~ 62 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD---------LLHFATAEAD-TI-----------------------D 62 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC---------cEEEEEEeCC-CH-----------------------H
Confidence 4789999999999999999999999999988632 4677888777 32 5
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+++.|+|+++||++++ ++|+++.+
T Consensus 63 ~~~~~~v~~~Pt~~~~-~~g~~~~~ 86 (102)
T cd02948 63 TLKRYRGKCEPTFLFY-KNGELVAV 86 (102)
T ss_pred HHHHcCCCcCcEEEEE-ECCEEEEE
Confidence 7899999999999888 78999887
No 57
>PHA02278 thioredoxin-like protein
Probab=99.53 E-value=6.4e-14 Score=108.38 Aligned_cols=75 Identities=19% Similarity=0.273 Sum_probs=62.6
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
++++++|+|||+||++|+.+.|.+.++.+++.. .+.++.|++|.+.. + ...
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~----------~~~~~~vdvd~~~~------------------d-~~~ 63 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI----------KKPILTLNLDAEDV------------------D-REK 63 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC----------CceEEEEECCcccc------------------c-cHH
Confidence 568999999999999999999999999877542 35688888886420 0 247
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+++.|+|.++||++++ ++|+.+.+
T Consensus 64 l~~~~~I~~iPT~i~f-k~G~~v~~ 87 (103)
T PHA02278 64 AVKLFDIMSTPVLIGY-KDGQLVKK 87 (103)
T ss_pred HHHHCCCccccEEEEE-ECCEEEEE
Confidence 8999999999999999 78999988
No 58
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.51 E-value=7.7e-14 Score=107.49 Aligned_cols=69 Identities=14% Similarity=0.314 Sum_probs=57.0
Q ss_pred cccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchh
Q 021494 105 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 184 (311)
Q Consensus 105 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~ 184 (311)
++++||+++|+|||+||++|+.+.|.+.+++++++ ++.++.|..+. .
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-----------~~~~~~vd~~~-~--------------------- 60 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-----------QIRHLAIEESS-I--------------------- 60 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-----------cCceEEEECCC-C---------------------
Confidence 35689999999999999999999999999998875 35566664441 1
Q ss_pred HHHHHHhCCCCccceEEEECCC
Q 021494 185 IKELTKYFDVQGIPCLVIIGPE 206 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~~ 206 (311)
...+++.|+|.++||+++++++
T Consensus 61 ~~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 61 KPSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred CHHHHHhcCCeecCEEEEEcCC
Confidence 4578999999999999999644
No 59
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.50 E-value=8.8e-14 Score=109.20 Aligned_cols=73 Identities=16% Similarity=0.362 Sum_probs=62.8
Q ss_pred cCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHH
Q 021494 107 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 186 (311)
Q Consensus 107 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 186 (311)
..|++++|+|||+||++|+.+.|.+.++.+++.+. ++.++.|++|. ..
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~---------~v~~~~vd~d~-----------------------~~ 69 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL---------GVGIATVNAGH-----------------------ER 69 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc---------CceEEEEeccc-----------------------cH
Confidence 36789999999999999999999999999999743 57777777665 34
Q ss_pred HHHHhCCCCccceEEEECCCCcEEEe
Q 021494 187 ELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 187 ~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
.+++.|+|.++||++++ ++|+++.+
T Consensus 70 ~l~~~~~V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 70 RLARKLGAHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred HHHHHcCCccCCEEEEE-ECCEEEEE
Confidence 78999999999999999 68888876
No 60
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.49 E-value=2.2e-13 Score=109.06 Aligned_cols=86 Identities=28% Similarity=0.481 Sum_probs=65.3
Q ss_pred cCC-CEEEEEEecCCChhhHhhhHHHH---HHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCc
Q 021494 107 LVG-KTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 182 (311)
Q Consensus 107 ~~g-k~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~ 182 (311)
-.| |+|+|+||++||++|+.+.+.+. .+.+.+.+ ++.++.|++|.+.... . ++...
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~i~~d~~~~~~-~---------~~~~~ 70 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA----------HFVVVYINIDGDKEVT-D---------FDGEA 70 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh----------heEEEEEEccCCceee-c---------cCCCC
Confidence 357 89999999999999999999875 45555553 5788888887654211 1 11111
Q ss_pred hhHHHHHHhCCCCccceEEEECCC-CcEEEe
Q 021494 183 PTIKELTKYFDVQGIPCLVIIGPE-GKTVTK 212 (311)
Q Consensus 183 d~~~~l~~~~~v~~~Pt~vlid~~-G~iv~~ 212 (311)
.....+++.|+|.++||++++|++ |+++.+
T Consensus 71 ~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 71 LSEKELARKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred ccHHHHHHHcCCccccEEEEEcCCCCceeEE
Confidence 235689999999999999999999 899987
No 61
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.48 E-value=5e-13 Score=113.29 Aligned_cols=120 Identities=22% Similarity=0.371 Sum_probs=97.2
Q ss_pred hcCCCCCeEe-eCCCCceeeccccCCCEEEEEEecCCCh-hhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC-
Q 021494 85 LTNHDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 161 (311)
Q Consensus 85 ~g~~~pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~- 161 (311)
.....|+|.| |.+|+ ++++++++||++||+|..+.|| .|...+..|.++.+++.++ +.++++++||+|+
T Consensus 28 ~~~~~~~f~L~d~~G~-~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-------~~~v~~v~ISvDP~ 99 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGK-TVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-------GKDVQFVFISVDPE 99 (174)
T ss_dssp TSCSSST-EEEETTSS-EEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-------TTTEEEEEEESSTT
T ss_pred CCccCCCcEEEcCCCC-EecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-------cCceEEEEEEeCCC
Confidence 4566789999 99999 9999999999999999999998 7999999999999999875 5689999999996
Q ss_pred --CHHHHHHHHhcC--CCcccccCchhHHHHHHhCCCC----------------ccceEEEECCCCcEEEe
Q 021494 162 --DQTSFESYFGTM--PWLALPFGDPTIKELTKYFDVQ----------------GIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 162 --~~~~~~~~~~~~--~~~~~p~~~d~~~~l~~~~~v~----------------~~Pt~vlid~~G~iv~~ 212 (311)
+++..++|.+.+ .|..+....+...++++.|++. ....++|||++|+++..
T Consensus 100 ~DTp~~L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 100 RDTPEVLKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp TC-HHHHHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred CCCHHHHHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 457788888754 3555555555667888988863 23579999999999976
No 62
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.47 E-value=5.8e-13 Score=101.35 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=60.5
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
+|++++|+||++||++|+.+.|.+.++++.+.+ .+.++.|+.|. ...
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~----------~~~~~~vd~~~-----------------------~~~ 57 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG----------QFVLAKVNCDA-----------------------QPQ 57 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC----------cEEEEEEeccC-----------------------CHH
Confidence 578999999999999999999999999988864 36666666655 448
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+++.|+|.++|++++++ +|+++.+
T Consensus 58 l~~~~~i~~~Pt~~~~~-~g~~~~~ 81 (96)
T cd02956 58 IAQQFGVQALPTVYLFA-AGQPVDG 81 (96)
T ss_pred HHHHcCCCCCCEEEEEe-CCEEeee
Confidence 99999999999999995 8988765
No 63
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.6e-13 Score=105.27 Aligned_cols=71 Identities=31% Similarity=0.571 Sum_probs=61.8
Q ss_pred cCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHH
Q 021494 107 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 186 (311)
Q Consensus 107 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 186 (311)
..+|.++|+|+|+||+||+.+.|.+.++..+|. ++.++-|++|. ..
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~-----------~v~Flkvdvde-----------------------~~ 64 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYP-----------DVVFLKVDVDE-----------------------LE 64 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCC-----------CCEEEEEeccc-----------------------CH
Confidence 346899999999999999999999999999986 46777777775 24
Q ss_pred HHHHhCCCCccceEEEECCCCcEEEe
Q 021494 187 ELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 187 ~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
.+++.|+|.++||++++ ++|+.+.+
T Consensus 65 ~~~~~~~V~~~PTf~f~-k~g~~~~~ 89 (106)
T KOG0907|consen 65 EVAKEFNVKAMPTFVFY-KGGEEVDE 89 (106)
T ss_pred hHHHhcCceEeeEEEEE-ECCEEEEE
Confidence 88999999999999999 88888877
No 64
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.42 E-value=1.1e-12 Score=100.83 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=61.0
Q ss_pred cCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHH
Q 021494 107 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 186 (311)
Q Consensus 107 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 186 (311)
..+++++|+||++||++|+.+.|.+.++++++++ .+.+..|++|.. .
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~----------~~~~~~vd~~~~-----------------------~ 62 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG----------VIRIGAVNCGDD-----------------------R 62 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC----------ceEEEEEeCCcc-----------------------H
Confidence 3568999999999999999999999999999864 467777777653 4
Q ss_pred HHHHhCCCCccceEEEECCCCcEEEe
Q 021494 187 ELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 187 ~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
.+++.|+|+++||++++ ++|+.+.+
T Consensus 63 ~~~~~~~v~~~Pt~~~~-~~g~~~~~ 87 (101)
T cd03003 63 MLCRSQGVNSYPSLYVF-PSGMNPEK 87 (101)
T ss_pred HHHHHcCCCccCEEEEE-cCCCCccc
Confidence 78999999999999999 78876544
No 65
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.41 E-value=1.4e-12 Score=100.86 Aligned_cols=76 Identities=25% Similarity=0.456 Sum_probs=61.3
Q ss_pred CCCEEEEEEecCCChhhHhhhHHH---HHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchh
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 184 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~ 184 (311)
.||+++|+||++||++|+.+.+.+ .++.+.+.+ ++.++.|+.+.+.. .
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~----------~~~~~~vd~~~~~~-------------------~ 60 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK----------DVVLLRADWTKNDP-------------------E 60 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC----------CeEEEEEecCCCCH-------------------H
Confidence 578999999999999999999887 567666653 57777877764321 1
Q ss_pred HHHHHHhCCCCccceEEEECC-CCcEEEe
Q 021494 185 IKELTKYFDVQGIPCLVIIGP-EGKTVTK 212 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~-~G~iv~~ 212 (311)
...++++|+|.++|+++++++ +|+++.+
T Consensus 61 ~~~~~~~~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 61 ITALLKRFGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred HHHHHHHcCCCCCCEEEEECCCCCCCCcc
Confidence 357899999999999999998 8998776
No 66
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.41 E-value=7.7e-13 Score=119.65 Aligned_cols=87 Identities=20% Similarity=0.319 Sum_probs=70.1
Q ss_pred eeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCccccc
Q 021494 101 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 180 (311)
Q Consensus 101 ~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~ 180 (311)
...++++.|+++||+||++||++|+.++|.|++++++|. +.|++|++|.+.. ..+|.
T Consensus 158 ~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg------------~~Vi~VsvD~~~~-----------~~fp~ 214 (271)
T TIGR02740 158 DRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG------------IEVLPVSVDGGPL-----------PGFPN 214 (271)
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC------------cEEEEEeCCCCcc-----------ccCCc
Confidence 477888999999999999999999999999999988873 6799999997542 12443
Q ss_pred CchhHHHHHHhCCCCccceEEEECCCCcEEE
Q 021494 181 GDPTIKELTKYFDVQGIPCLVIIGPEGKTVT 211 (311)
Q Consensus 181 ~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~ 211 (311)
..+ +..+.+.|||.++|+++|+|++|+.+.
T Consensus 215 ~~~-d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 215 ARP-DAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred ccC-CHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 322 456889999999999999999554443
No 67
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.38 E-value=2.8e-12 Score=105.93 Aligned_cols=91 Identities=18% Similarity=0.311 Sum_probs=69.2
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
++++++|+|||+||++|+.+.|.+.++.+++... ++.++.|++|... +
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~---------~v~f~~VDvd~~~-----------------------~ 93 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN---------NLKFGKIDIGRFP-----------------------N 93 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC---------CeEEEEEECCCCH-----------------------H
Confidence 4579999999999999999999999999988632 6888888887744 6
Q ss_pred HHHhCCCCc------cceEEEECCCCcEEEeccchhhhcccccCCCCcHH
Q 021494 188 LTKYFDVQG------IPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEA 231 (311)
Q Consensus 188 l~~~~~v~~------~Pt~vlid~~G~iv~~~g~~~~~~~g~~~~p~~~~ 231 (311)
+++.|+|.+ +||++++ ++|+.+.+........-+...+.|+-+
T Consensus 94 la~~~~V~~~~~v~~~PT~ilf-~~Gk~v~r~~G~~~~~~~~~~~~~~~~ 142 (152)
T cd02962 94 VAEKFRVSTSPLSKQLPTIILF-QGGKEVARRPYYNDSKGRAVPFTFSKE 142 (152)
T ss_pred HHHHcCceecCCcCCCCEEEEE-ECCEEEEEEeccccCccccccccccHH
Confidence 788888877 9999999 699999875432222223333445543
No 68
>PRK09381 trxA thioredoxin; Provisional
Probab=99.38 E-value=6e-12 Score=98.10 Aligned_cols=70 Identities=23% Similarity=0.516 Sum_probs=61.5
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
+++++|+||++||++|+.+.|.+.++++++.. ++.++.|++|... .+
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~----------~~~~~~vd~~~~~-----------------------~~ 67 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG----------KLTVAKLNIDQNP-----------------------GT 67 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC----------CcEEEEEECCCCh-----------------------hH
Confidence 67899999999999999999999999998864 4778888877643 67
Q ss_pred HHhCCCCccceEEEECCCCcEEEe
Q 021494 189 TKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
.+.|+|.++|+++++ ++|+++.+
T Consensus 68 ~~~~~v~~~Pt~~~~-~~G~~~~~ 90 (109)
T PRK09381 68 APKYGIRGIPTLLLF-KNGEVAAT 90 (109)
T ss_pred HHhCCCCcCCEEEEE-eCCeEEEE
Confidence 889999999999999 79998876
No 69
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.38 E-value=6.8e-13 Score=105.15 Aligned_cols=78 Identities=22% Similarity=0.456 Sum_probs=58.7
Q ss_pred eccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCc
Q 021494 103 PVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 182 (311)
Q Consensus 103 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~ 182 (311)
..+..++|+|+|+|||+||++|+.+.|.+.+..+.... +..++.|.+|.+.
T Consensus 13 ~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~----------~~~fv~v~vd~~~------------------- 63 (117)
T cd02959 13 KEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL----------SHNFVMVNLEDDE------------------- 63 (117)
T ss_pred HHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh----------cCcEEEEEecCCC-------------------
Confidence 33445689999999999999999999999887665432 2346666666543
Q ss_pred hhHHHHHHhCCCCc--cceEEEECCCCcEEEe
Q 021494 183 PTIKELTKYFDVQG--IPCLVIIGPEGKTVTK 212 (311)
Q Consensus 183 d~~~~l~~~~~v~~--~Pt~vlid~~G~iv~~ 212 (311)
....+.|++.+ +||++++|++|+++.+
T Consensus 64 ---~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 64 ---EPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred ---CchhhhcccCCCccceEEEECCCCCCchh
Confidence 12345777865 9999999999999876
No 70
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.1e-12 Score=115.05 Aligned_cols=71 Identities=28% Similarity=0.514 Sum_probs=62.7
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
+-++|||+||++||++|+.++|.|.++..+|+.+ +.+.-|++|.+ ..
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~----------f~LakvN~D~~-----------------------p~ 88 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK----------FKLAKVNCDAE-----------------------PM 88 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc----------eEEEEecCCcc-----------------------hh
Confidence 3469999999999999999999999999999875 66777777664 48
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
++..|||+++|++|++ .+|+.|.-
T Consensus 89 vAaqfgiqsIPtV~af-~dGqpVdg 112 (304)
T COG3118 89 VAAQFGVQSIPTVYAF-KDGQPVDG 112 (304)
T ss_pred HHHHhCcCcCCeEEEe-eCCcCccc
Confidence 9999999999999999 89998865
No 71
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.36 E-value=3.1e-12 Score=100.03 Aligned_cols=95 Identities=26% Similarity=0.454 Sum_probs=65.0
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
+||+++|+||++||++|+.+.+.+.+..+-...- ..++.++.++++.+...........+. +.......+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 73 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYL-------KDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKE 73 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEE-------HCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHh-------hcCeEEEEEecCCcccccccccccccc---hhhhHHHHH
Confidence 5799999999999999999999887654421110 125788888888766544444432221 222223568
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+.+.|+|.++||++++|++|+++.+
T Consensus 74 l~~~~~v~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 74 LAQRYGVNGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp HHHHTT--SSSEEEECTTTSCEEEE
T ss_pred HHHHcCCCccCEEEEEcCCCCEEEE
Confidence 9999999999999999999999976
No 72
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.36 E-value=3.7e-12 Score=100.13 Aligned_cols=71 Identities=10% Similarity=0.065 Sum_probs=58.3
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
.+++++|.|||+||++|+.+.|.+.++++++++ .+.|+.|++|.+ ..
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~----------~v~~~~Vd~d~~-----------------------~~ 74 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD----------QVLFVAINCWWP-----------------------QG 74 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------hH
Confidence 568999999999999999999999999999864 366777766653 36
Q ss_pred HH-HhCCCCccceEEEECCCCcEEEe
Q 021494 188 LT-KYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~-~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
++ ++|+|.++||+.++ ++|+...+
T Consensus 75 l~~~~~~I~~~PTl~lf-~~g~~~~~ 99 (113)
T cd03006 75 KCRKQKHFFYFPVIHLY-YRSRGPIE 99 (113)
T ss_pred HHHHhcCCcccCEEEEE-ECCccceE
Confidence 77 68999999999999 67765433
No 73
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.35 E-value=3.3e-12 Score=99.40 Aligned_cols=71 Identities=20% Similarity=0.313 Sum_probs=60.5
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
.+|+|+|.|+|+||++|+.+.|.|.+++++|++. +.++-|++|. ..+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~----------~~f~kVDVDe-----------------------v~d 59 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM----------ASIYLVDVDK-----------------------VPV 59 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc----------eEEEEEeccc-----------------------cHH
Confidence 5799999999999999999999999999998632 6677777665 458
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+++.|+|.++||++++ .+|+-+..
T Consensus 60 va~~y~I~amPtfvff-kngkh~~~ 83 (114)
T cd02986 60 YTQYFDISYIPSTIFF-FNGQHMKV 83 (114)
T ss_pred HHHhcCceeCcEEEEE-ECCcEEEE
Confidence 9999999999999999 67776655
No 74
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.35 E-value=1.4e-11 Score=95.33 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=56.4
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
++++++|+|||+||++|+.+.|.|.+++++++.+ +.++.+..++.+. ...
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~-------~~~~~~~~vd~~~-----------------------~~~ 63 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSS-------GSPVRVGKLDATA-----------------------YSS 63 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhc-------CCcEEEEEEECcc-----------------------CHh
Confidence 4579999999999999999999999999998753 2245566565543 347
Q ss_pred HHHhCCCCccceEEEECCCCcE
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKT 209 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~i 209 (311)
+++.|+|.++|++++++ +|.+
T Consensus 64 ~~~~~~I~~~Pt~~l~~-~~~~ 84 (104)
T cd03000 64 IASEFGVRGYPTIKLLK-GDLA 84 (104)
T ss_pred HHhhcCCccccEEEEEc-CCCc
Confidence 88999999999999994 4543
No 75
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.35 E-value=5.1e-12 Score=97.62 Aligned_cols=72 Identities=18% Similarity=0.365 Sum_probs=59.9
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
.+++++|+|||+||++|+.+.|.+.++.+++.. .+.+..|+.|. ...
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~----------~~~~~~vd~~~-----------------------~~~ 64 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG----------KVKVGSVDCQK-----------------------YES 64 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC----------CcEEEEEECCc-----------------------hHH
Confidence 357999999999999999999999999998854 46677776654 457
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+++.|+|.++||++++.++|+.+.+
T Consensus 65 ~~~~~~i~~~Pt~~~~~~g~~~~~~ 89 (104)
T cd03004 65 LCQQANIRAYPTIRLYPGNASKYHS 89 (104)
T ss_pred HHHHcCCCcccEEEEEcCCCCCceE
Confidence 8999999999999999666566655
No 76
>PRK10996 thioredoxin 2; Provisional
Probab=99.34 E-value=6e-12 Score=102.80 Aligned_cols=71 Identities=28% Similarity=0.525 Sum_probs=60.5
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
.+|+++|+||++||++|+.+.|.|.++++++.. ++.++.|+.|. ...
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~----------~v~~~~vd~~~-----------------------~~~ 97 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG----------KVRFVKVNTEA-----------------------ERE 97 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC----------CeEEEEEeCCC-----------------------CHH
Confidence 478999999999999999999999999988754 46677776554 347
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+++.|+|.++|+++++ ++|+++.+
T Consensus 98 l~~~~~V~~~Ptlii~-~~G~~v~~ 121 (139)
T PRK10996 98 LSARFRIRSIPTIMIF-KNGQVVDM 121 (139)
T ss_pred HHHhcCCCccCEEEEE-ECCEEEEE
Confidence 8999999999999998 58999877
No 77
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.33 E-value=4.8e-12 Score=99.59 Aligned_cols=69 Identities=19% Similarity=0.339 Sum_probs=57.9
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
+++++|+||++||++|+.+.|.|.++.+++. ++.++-|+. +. . .+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-----------~v~f~~vd~--~~---------------------~-~l 68 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP-----------ETKFVKINA--EK---------------------A-FL 68 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-----------CcEEEEEEc--hh---------------------h-HH
Confidence 4799999999999999999999999998875 355555544 33 5 78
Q ss_pred HHhCCCCccceEEEECCCCcEEEec
Q 021494 189 TKYFDVQGIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~G~iv~~~ 213 (311)
++.|+|.++||++++ ++|+++.+.
T Consensus 69 ~~~~~i~~~Pt~~~f-~~G~~v~~~ 92 (113)
T cd02957 69 VNYLDIKVLPTLLVY-KNGELIDNI 92 (113)
T ss_pred HHhcCCCcCCEEEEE-ECCEEEEEE
Confidence 999999999999999 789998773
No 78
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.33 E-value=4.7e-12 Score=98.49 Aligned_cols=70 Identities=29% Similarity=0.479 Sum_probs=60.3
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
.|++++|+|||+||++|+.+.|.+.++++++.. .+.++.|+.|.+. ...
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~----------~~~~~~v~~~~~~---------------------~~~ 65 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG----------LVQVAAVDCDEDK---------------------NKP 65 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC----------CceEEEEecCccc---------------------cHH
Confidence 468899999999999999999999999998864 4778888887643 457
Q ss_pred HHHhCCCCccceEEEECCCCc
Q 021494 188 LTKYFDVQGIPCLVIIGPEGK 208 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~ 208 (311)
+++.|+|.++|++++++++++
T Consensus 66 ~~~~~~i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 66 LCGKYGVQGFPTLKVFRPPKK 86 (109)
T ss_pred HHHHcCCCcCCEEEEEeCCCc
Confidence 899999999999999977763
No 79
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.33 E-value=8e-12 Score=95.05 Aligned_cols=70 Identities=19% Similarity=0.453 Sum_probs=58.2
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
+++++|+||++||++|+.+.|.|.++.+++.. ++.++.|+.+ . ..++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~----------~i~~~~vd~~--~---------------------~~~~ 60 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP----------SVLFLSIEAE--E---------------------LPEI 60 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC----------ceEEEEEccc--c---------------------CHHH
Confidence 68999999999999999999999999988732 4555555443 3 4578
Q ss_pred HHhCCCCccceEEEECCCCcEEEe
Q 021494 189 TKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
++.|+|.++||++++ .+|+++.+
T Consensus 61 ~~~~~i~~~Pt~~~~-~~g~~~~~ 83 (97)
T cd02984 61 SEKFEITAVPTFVFF-RNGTIVDR 83 (97)
T ss_pred HHhcCCccccEEEEE-ECCEEEEE
Confidence 999999999999999 58998877
No 80
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.33 E-value=1.9e-11 Score=99.37 Aligned_cols=71 Identities=13% Similarity=0.249 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
.+++|+|.|||+||++|+.+.|.|.++.+++.+. +.|+-|++|. .++
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~----------~~~~kVDVDe-----------------------~~d 68 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF----------AVIYLVDITE-----------------------VPD 68 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc----------eEEEEEECCC-----------------------CHH
Confidence 4579999999999999999999999999998753 6677887776 458
Q ss_pred HHHhCCCCccceEE-EECCCCc-EEEe
Q 021494 188 LTKYFDVQGIPCLV-IIGPEGK-TVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~v-lid~~G~-iv~~ 212 (311)
+++.|+|.+.|+++ ++ ++|+ .+.+
T Consensus 69 la~~y~I~~~~t~~~ff-k~g~~~vd~ 94 (142)
T PLN00410 69 FNTMYELYDPCTVMFFF-RNKHIMIDL 94 (142)
T ss_pred HHHHcCccCCCcEEEEE-ECCeEEEEE
Confidence 99999999887777 66 7887 5555
No 81
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.32 E-value=1.8e-11 Score=94.02 Aligned_cols=69 Identities=22% Similarity=0.359 Sum_probs=56.4
Q ss_pred cCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHH
Q 021494 107 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 186 (311)
Q Consensus 107 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 186 (311)
++|+ ++|+|||+||++|+.+.|.+.++++.++. .++.+..|+.+. ..
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~---------~~v~~~~vd~~~-----------------------~~ 61 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDD---------LGINVAKVDVTQ-----------------------EP 61 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc---------CCeEEEEEEccC-----------------------CH
Confidence 3555 67999999999999999999999887653 257777776654 34
Q ss_pred HHHHhCCCCccceEEEECCCCcE
Q 021494 187 ELTKYFDVQGIPCLVIIGPEGKT 209 (311)
Q Consensus 187 ~l~~~~~v~~~Pt~vlid~~G~i 209 (311)
.+++.|+|.++||++++ ++|++
T Consensus 62 ~~~~~~~i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 62 GLSGRFFVTALPTIYHA-KDGVF 83 (101)
T ss_pred hHHHHcCCcccCEEEEe-CCCCE
Confidence 68999999999999998 88885
No 82
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.32 E-value=1.8e-11 Score=96.44 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
++++|+|+||++||++|+.+.|.|.++.+++. ++.++-|+.|. ...
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-----------~i~f~~Vd~~~-----------------------~~~ 66 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-----------ETKFIKVNAEK-----------------------APF 66 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-----------CCEEEEEEccc-----------------------CHH
Confidence 45789999999999999999999999998764 46677776665 447
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+++.|+|.++||++++ ++|+++.+
T Consensus 67 l~~~~~v~~vPt~l~f-k~G~~v~~ 90 (113)
T cd02989 67 LVEKLNIKVLPTVILF-KNGKTVDR 90 (113)
T ss_pred HHHHCCCccCCEEEEE-ECCEEEEE
Confidence 9999999999999999 78999877
No 83
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.31 E-value=6.1e-12 Score=96.49 Aligned_cols=71 Identities=25% Similarity=0.511 Sum_probs=58.3
Q ss_pred EEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHH
Q 021494 111 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 190 (311)
Q Consensus 111 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 190 (311)
.++|+|||+||++|+.+.|.+.+++++++.. ...+.++.|+.+. ...+++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~~~~~~vd~~~-----------------------~~~~~~ 67 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNE-------NPSVKIAKVDCTQ-----------------------HRELCS 67 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhcc-------CCcEEEEEEECCC-----------------------ChhhHh
Confidence 4999999999999999999999999998752 2356777666554 347889
Q ss_pred hCCCCccceEEEECCCCcEEEe
Q 021494 191 YFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 191 ~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
.|+|.++|+++++ ++|+.+.+
T Consensus 68 ~~~v~~~Pt~~~~-~~g~~~~~ 88 (102)
T cd03005 68 EFQVRGYPTLLLF-KDGEKVDK 88 (102)
T ss_pred hcCCCcCCEEEEE-eCCCeeeE
Confidence 9999999999999 67876655
No 84
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.31 E-value=1.4e-11 Score=96.01 Aligned_cols=75 Identities=19% Similarity=0.308 Sum_probs=58.4
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
.+++++|+|||+||++|+++.|.+.++++++++.. .....+.+..|+.|. ...
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~----~~~~~~~~~~vd~d~-----------------------~~~ 69 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEF----PDAGKVVWGKVDCDK-----------------------ESD 69 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhcc----CCCCcEEEEEEECCC-----------------------CHH
Confidence 35789999999999999999999999999886430 000135566666554 447
Q ss_pred HHHhCCCCccceEEEECCCCcEE
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv 210 (311)
++++|+|.++||++++ ++|++.
T Consensus 70 l~~~~~v~~~Ptl~~~-~~g~~~ 91 (108)
T cd02996 70 IADRYRINKYPTLKLF-RNGMMM 91 (108)
T ss_pred HHHhCCCCcCCEEEEE-eCCcCc
Confidence 9999999999999999 788743
No 85
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.30 E-value=2.2e-11 Score=96.01 Aligned_cols=77 Identities=22% Similarity=0.364 Sum_probs=59.8
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
+++++|+||++||++|+.+.|.+.++++++++. .+.+.+..|+.+.+. ...+
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~-------~~~v~~~~vd~~~~~---------------------~~~~ 70 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW-------RPVVRVAAVDCADEE---------------------NVAL 70 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc-------CCceEEEEEeccchh---------------------hHHH
Confidence 379999999999999999999999999988753 234666666654433 5588
Q ss_pred HHhCCCCccceEEEECCCCcEEEecc
Q 021494 189 TKYFDVQGIPCLVIIGPEGKTVTKQG 214 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~G~iv~~~g 214 (311)
++.|+|+++|+++++ ++|......|
T Consensus 71 ~~~~~i~~~Pt~~lf-~~~~~~~~~~ 95 (114)
T cd02992 71 CRDFGVTGYPTLRYF-PPFSKEATDG 95 (114)
T ss_pred HHhCCCCCCCEEEEE-CCCCccCCCC
Confidence 999999999999999 4454444433
No 86
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.29 E-value=1.5e-11 Score=96.17 Aligned_cols=72 Identities=15% Similarity=0.379 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
+||+++|.||++||++|+.+.|.+.++++.+++. ++.+..|+.|.+. ..
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~---------~~~~~~vd~d~~~----------------------~~ 68 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS---------NVKVAKFNADGEQ----------------------RE 68 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC---------CeEEEEEECCccc----------------------hh
Confidence 4689999999999999999999999999998743 6888888877632 24
Q ss_pred HHH-hCCCCccceEEEECCCCcEE
Q 021494 188 LTK-YFDVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 188 l~~-~~~v~~~Pt~vlid~~G~iv 210 (311)
+++ .|+|+++||+++++++++..
T Consensus 69 ~~~~~~~v~~~Pti~~f~~~~~~~ 92 (109)
T cd02993 69 FAKEELQLKSFPTILFFPKNSRQP 92 (109)
T ss_pred hHHhhcCCCcCCEEEEEcCCCCCc
Confidence 554 59999999999998776543
No 87
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.29 E-value=2.3e-11 Score=93.56 Aligned_cols=75 Identities=25% Similarity=0.462 Sum_probs=60.0
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
++++++|+||++||++|+++.|.+.++.+.+... ..+.++.|+.+.+. ...
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~~~---------------------~~~ 66 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED--------GKGVLAAVDCTKPE---------------------HDA 66 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC--------CceEEEEEECCCCc---------------------cHH
Confidence 4578999999999999999999999999988742 24566666655432 457
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+++.|+|.++|+++++ ++|+++.+
T Consensus 67 ~~~~~~i~~~Pt~~~~-~~g~~~~~ 90 (104)
T cd02997 67 LKEEYNVKGFPTFKYF-ENGKFVEK 90 (104)
T ss_pred HHHhCCCccccEEEEE-eCCCeeEE
Confidence 8999999999998888 67887655
No 88
>PTZ00051 thioredoxin; Provisional
Probab=99.28 E-value=2.1e-11 Score=92.95 Aligned_cols=70 Identities=21% Similarity=0.447 Sum_probs=58.3
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
.+++++|+||++||++|+.+.|.+.++.+++. ++.++.|+.+. ...
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-----------~~~~~~vd~~~-----------------------~~~ 62 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-----------KMVFVKVDVDE-----------------------LSE 62 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-----------CcEEEEEECcc-----------------------hHH
Confidence 35799999999999999999999998888653 45666665543 457
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+++.|+|.++|+++++ ++|+++.+
T Consensus 63 ~~~~~~v~~~Pt~~~~-~~g~~~~~ 86 (98)
T PTZ00051 63 VAEKENITSMPTFKVF-KNGSVVDT 86 (98)
T ss_pred HHHHCCCceeeEEEEE-eCCeEEEE
Confidence 8999999999998888 89999877
No 89
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.28 E-value=4.8e-11 Score=91.14 Aligned_cols=71 Identities=15% Similarity=0.356 Sum_probs=60.4
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
.+++++++||++||+.|+.+.|.+.++.+++.+ ++.++.|+.|. ..+
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~----------~v~~~~id~d~-----------------------~~~ 58 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG----------AVHFVEIDIDE-----------------------DQE 58 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC----------ceEEEEEECCC-----------------------CHH
Confidence 468999999999999999999999999888763 46677776654 347
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+.+.|+|.++|+++++ ++|+++.+
T Consensus 59 l~~~~~v~~vPt~~i~-~~g~~v~~ 82 (97)
T cd02949 59 IAEAAGIMGTPTVQFF-KDKELVKE 82 (97)
T ss_pred HHHHCCCeeccEEEEE-ECCeEEEE
Confidence 8999999999999999 57998876
No 90
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.27 E-value=1.3e-10 Score=101.01 Aligned_cols=115 Identities=20% Similarity=0.392 Sum_probs=95.0
Q ss_pred CeEe-eCCCCceeeccccCCCEEEEEEecCCCh-hhHhhhHHHHHHHHHHH-hhhhhcCCCCCCeEEEEEecCC---CHH
Q 021494 91 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIK-QNLVEKGDALEDFEVVFVSTDR---DQT 164 (311)
Q Consensus 91 df~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~-~~~~~~~~~~~~~~vv~Vs~d~---~~~ 164 (311)
+|.+ +.+|+ .+++.+++||+++|+|..+.|| .|...+..|.++.+++. .. ..++++++|++|. +++
T Consensus 49 ~f~l~d~~G~-~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~-------~~~v~vv~itvDPerDtp~ 120 (207)
T COG1999 49 DFELTDQDGK-PFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGE-------GDDVQVVFITVDPERDTPE 120 (207)
T ss_pred ceeeecCCCC-EeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhcccc-------CCCEEEEEEEECCCCCCHH
Confidence 6999 99999 9999999999999999999999 79999999999999988 43 6789999999996 456
Q ss_pred HHHHHHh-cC--CCcccccCchhHHHHHHhCCCCc---------------cceEEEECCCCcEEEec
Q 021494 165 SFESYFG-TM--PWLALPFGDPTIKELTKYFDVQG---------------IPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 165 ~~~~~~~-~~--~~~~~p~~~d~~~~l~~~~~v~~---------------~Pt~vlid~~G~iv~~~ 213 (311)
..++|.. .. .|..+....+...++++.|+|.. ...++++|++|+++...
T Consensus 121 ~lk~Y~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~ 187 (207)
T COG1999 121 VLKKYAELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTY 187 (207)
T ss_pred HHHHHhcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEe
Confidence 6777777 22 25556555556778899988862 24689999999999873
No 91
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.26 E-value=2.2e-11 Score=94.75 Aligned_cols=71 Identities=17% Similarity=0.245 Sum_probs=61.8
Q ss_pred CCCEEEEEEecCC--ChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhH
Q 021494 108 VGKTVGLYFSARW--CIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 185 (311)
Q Consensus 108 ~gk~vll~F~a~w--C~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~ 185 (311)
.|.+++|.||++| ||+|..+.|.|.++.++|.++ +.++-|+.|..
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~----------v~f~kVdid~~----------------------- 72 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR----------FRAAVVGRADE----------------------- 72 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc----------EEEEEEECCCC-----------------------
Confidence 4567999999997 999999999999999998753 66777777664
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 186 KELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 186 ~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
.+++..|+|.++||++++ ++|+++.+
T Consensus 73 ~~la~~f~V~sIPTli~f-kdGk~v~~ 98 (111)
T cd02965 73 QALAARFGVLRTPALLFF-RDGRYVGV 98 (111)
T ss_pred HHHHHHcCCCcCCEEEEE-ECCEEEEE
Confidence 489999999999999999 89999987
No 92
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.26 E-value=1.3e-10 Score=101.15 Aligned_cols=119 Identities=24% Similarity=0.369 Sum_probs=97.6
Q ss_pred CeEe-eCCCCceeeccccCCCEEEEEEecCCCh-hhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC---CHHH
Q 021494 91 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCI-PCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQTS 165 (311)
Q Consensus 91 df~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~-~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~---~~~~ 165 (311)
+|.| +.+|+ .++-.+|.||++||||..++|| .|..++..|.+..+++.++. +-.+.=|||++|. +.+.
T Consensus 121 pF~L~d~~Gk-~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~------~~~~~PlFIsvDPeRD~~~~ 193 (280)
T KOG2792|consen 121 PFSLVDHDGK-RVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKP------GLPPVPLFISVDPERDSVEV 193 (280)
T ss_pred ceEEEecCCC-eecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccC------CCCccceEEEeCcccCCHHH
Confidence 5998 99999 9999999999999999999999 79999999999999998751 2223358999997 6789
Q ss_pred HHHHHhcCC--CcccccCchhHHHHHHhCCCCcc--c-------------eEEEECCCCcEEEeccch
Q 021494 166 FESYFGTMP--WLALPFGDPTIKELTKYFDVQGI--P-------------CLVIIGPEGKTVTKQGRN 216 (311)
Q Consensus 166 ~~~~~~~~~--~~~~p~~~d~~~~l~~~~~v~~~--P-------------t~vlid~~G~iv~~~g~~ 216 (311)
+++|++++. .+.++-..+...++++.|.|--. | .++||||+|+.+...|++
T Consensus 194 ~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN 261 (280)
T KOG2792|consen 194 VAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRN 261 (280)
T ss_pred HHHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhccc
Confidence 999999775 45566666667789999988321 2 589999999999887654
No 93
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.26 E-value=3.5e-11 Score=92.11 Aligned_cols=71 Identities=34% Similarity=0.672 Sum_probs=60.2
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
.+++++|+||++||++|+.+.|.|.++.+++.+ ++.++.|+.+. ...
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~----------~v~~~~vd~~~-----------------------~~~ 62 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD----------NVKFAKVDCDE-----------------------NKE 62 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT----------TSEEEEEETTT-----------------------SHH
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc----------ccccchhhhhc-----------------------cch
Confidence 368999999999999999999999999998874 46677776654 458
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+++.|+|.++|+++++ .+|+.+.+
T Consensus 63 l~~~~~v~~~Pt~~~~-~~g~~~~~ 86 (103)
T PF00085_consen 63 LCKKYGVKSVPTIIFF-KNGKEVKR 86 (103)
T ss_dssp HHHHTTCSSSSEEEEE-ETTEEEEE
T ss_pred hhhccCCCCCCEEEEE-ECCcEEEE
Confidence 9999999999999999 67776665
No 94
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.24 E-value=4.8e-11 Score=91.22 Aligned_cols=71 Identities=25% Similarity=0.463 Sum_probs=58.2
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
++++++|+||++||++|+.+.+.+.++.+.+... .++.++.+..|. ...
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~-----------------------~~~ 60 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD--------PDIVLAKVDATA-----------------------EKD 60 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC--------CceEEEEEEccc-----------------------hHH
Confidence 6889999999999999999999999999888642 235555555443 458
Q ss_pred HHHhCCCCccceEEEECCCCcE
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKT 209 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~i 209 (311)
+++.|+|.++|+++++++++.+
T Consensus 61 ~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 61 LASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred HHHhCCCCcCCEEEEecCCCcc
Confidence 8999999999999999877763
No 95
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.23 E-value=9.3e-11 Score=92.99 Aligned_cols=71 Identities=7% Similarity=0.117 Sum_probs=58.7
Q ss_pred CEEEEEEecCCChh--hH--hhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhH
Q 021494 110 KTVGLYFSARWCIP--CE--KFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 185 (311)
Q Consensus 110 k~vll~F~a~wC~~--C~--~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~ 185 (311)
.++|++||++||++ |+ ...|.+.++++++-+. .++.|+-|++|. +
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~--------~~v~~~kVD~d~-----------------------~ 76 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED--------KGIGFGLVDSKK-----------------------D 76 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc--------CCCEEEEEeCCC-----------------------C
Confidence 58999999999987 99 7888899998888421 257777777776 4
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 186 KELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 186 ~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
..++++|+|.++||++|+ ++|+++..
T Consensus 77 ~~La~~~~I~~iPTl~lf-k~G~~v~~ 102 (120)
T cd03065 77 AKVAKKLGLDEEDSIYVF-KDDEVIEY 102 (120)
T ss_pred HHHHHHcCCccccEEEEE-ECCEEEEe
Confidence 589999999999999999 78987753
No 96
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.23 E-value=2e-10 Score=91.68 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=57.9
Q ss_pred cccCCCEEEEEEecCCChhhHhhhHHH---HHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 021494 105 SSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 181 (311)
Q Consensus 105 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~ 181 (311)
+.-++|+|+|+|+|+||++|+.+.+.. .++.+.+.+ ++.+|-|+.+...+....+
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~----------~fv~VkvD~~~~~~~~~~~------------ 68 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE----------NFVPIKVDREERPDVDKIY------------ 68 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC----------CEEEEEEeCCcCcHHHHHH------------
Confidence 344689999999999999999997733 345555543 4555555554432211111
Q ss_pred chhHHHHHHhCCCCccceEEEECCCCcEEEecc
Q 021494 182 DPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQG 214 (311)
Q Consensus 182 ~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~g 214 (311)
.......|++.++|+++|+|++|++++..+
T Consensus 69 ---~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~~ 98 (124)
T cd02955 69 ---MNAAQAMTGQGGWPLNVFLTPDLKPFFGGT 98 (124)
T ss_pred ---HHHHHHhcCCCCCCEEEEECCCCCEEeeee
Confidence 112334689999999999999999998854
No 97
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.8e-11 Score=103.98 Aligned_cols=97 Identities=22% Similarity=0.386 Sum_probs=73.5
Q ss_pred eccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCc
Q 021494 103 PVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 182 (311)
Q Consensus 103 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~ 182 (311)
.++...+|.|+|+|+|.||+||++..|.+..+..+|+. ..++-|++| +
T Consensus 15 ~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-----------aVFlkVdVd--~------------------- 62 (288)
T KOG0908|consen 15 ELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-----------AVFLKVDVD--E------------------- 62 (288)
T ss_pred hhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-----------cEEEEEeHH--H-------------------
Confidence 34445569999999999999999999999999999964 445555544 3
Q ss_pred hhHHHHHHhCCCCccceEEEECCCCcEEEeccchhhhcccccCCCCcHHHHHHHHHHHHHHhccCCC
Q 021494 183 PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPR 249 (311)
Q Consensus 183 d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~g~~~~~~~g~~~~p~~~~~i~~L~~~~~~~~~~~~~ 249 (311)
.+.++..+||.++||++++ .+|+-+.+ ..|+++ ..|++++.+.+.+...
T Consensus 63 --c~~taa~~gV~amPTFiff-~ng~kid~-------~qGAd~--------~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 63 --CRGTAATNGVNAMPTFIFF-RNGVKIDQ-------IQGADA--------SGLEEKVAKYASTSAA 111 (288)
T ss_pred --hhchhhhcCcccCceEEEE-ecCeEeee-------ecCCCH--------HHHHHHHHHHhccCcc
Confidence 5688999999999999999 77777666 566655 5566666665544433
No 98
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.21 E-value=9.9e-11 Score=89.12 Aligned_cols=70 Identities=26% Similarity=0.566 Sum_probs=59.7
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
+++++|+||++||++|+.+.+.+.++.+++.. ++.++.|+.+.+ ..+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~vd~~~~-----------------------~~~ 60 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG----------KVKFVKLNVDEN-----------------------PDI 60 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC----------CeEEEEEECCCC-----------------------HHH
Confidence 46899999999999999999999999888764 477888876653 478
Q ss_pred HHhCCCCccceEEEECCCCcEEEe
Q 021494 189 TKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
++.|+|.++|+++++ ++|+++.+
T Consensus 61 ~~~~~v~~~P~~~~~-~~g~~~~~ 83 (101)
T TIGR01068 61 AAKYGIRSIPTLLLF-KNGKEVDR 83 (101)
T ss_pred HHHcCCCcCCEEEEE-eCCcEeee
Confidence 899999999999999 78887765
No 99
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.20 E-value=6.4e-11 Score=100.39 Aligned_cols=68 Identities=15% Similarity=0.244 Sum_probs=57.3
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
+++|+|+||++||++|+.+.|.|.+++++|. .+.++-|+.| . . .+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-----------~vkF~kVd~d--~---------------------~-~l 127 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-----------AVKFCKIRAS--A---------------------T-GA 127 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC-----------CeEEEEEecc--c---------------------h-hh
Confidence 3599999999999999999999999998874 3555555544 2 3 68
Q ss_pred HHhCCCCccceEEEECCCCcEEEe
Q 021494 189 TKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+..|+|.++||++|+ ++|+++.+
T Consensus 128 ~~~f~v~~vPTllly-k~G~~v~~ 150 (175)
T cd02987 128 SDEFDTDALPALLVY-KGGELIGN 150 (175)
T ss_pred HHhCCCCCCCEEEEE-ECCEEEEE
Confidence 899999999999999 88999976
No 100
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.19 E-value=4.7e-11 Score=94.44 Aligned_cols=79 Identities=16% Similarity=0.330 Sum_probs=62.7
Q ss_pred CCCEEEEEEec-------CCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCccccc
Q 021494 108 VGKTVGLYFSA-------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 180 (311)
Q Consensus 108 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~ 180 (311)
+|++|+|+||| +||++|+.+.|.|.++.++++. ++.++.|.+|... .
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~----------~v~fv~Vdvd~~~----------------~ 73 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE----------DCVFIYCDVGDRP----------------Y 73 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC----------CCEEEEEEcCCcc----------------c
Confidence 57899999999 9999999999999999998763 4778888887642 0
Q ss_pred CchhHHHHHHhCCCC-ccceEEEECCCCcEEEe
Q 021494 181 GDPTIKELTKYFDVQ-GIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 181 ~~d~~~~l~~~~~v~-~~Pt~vlid~~G~iv~~ 212 (311)
..+....++..|+|. ++||+++++..++++..
T Consensus 74 w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 74 WRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred ccCcchhhHhccCcccCCCEEEEEcCCceecch
Confidence 011145888999998 99999999766666544
No 101
>PTZ00102 disulphide isomerase; Provisional
Probab=99.19 E-value=1.9e-10 Score=112.21 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=58.8
Q ss_pred cCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHH
Q 021494 107 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 186 (311)
Q Consensus 107 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 186 (311)
-.||.|+|+|||+||++|+.+.|.+.++++.+++. ..+.+..|+.+. +.
T Consensus 373 ~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~--------~~v~~~~id~~~-----------------------~~ 421 (477)
T PTZ00102 373 KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN--------DSIIVAKMNGTA-----------------------NE 421 (477)
T ss_pred cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC--------CcEEEEEEECCC-----------------------Cc
Confidence 35799999999999999999999999999888642 245566565544 33
Q ss_pred HHHHhCCCCccceEEEECCCCcEE
Q 021494 187 ELTKYFDVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 187 ~l~~~~~v~~~Pt~vlid~~G~iv 210 (311)
..++.|+++++||++++++++++.
T Consensus 422 ~~~~~~~v~~~Pt~~~~~~~~~~~ 445 (477)
T PTZ00102 422 TPLEEFSWSAFPTILFVKAGERTP 445 (477)
T ss_pred cchhcCCCcccCeEEEEECCCcce
Confidence 568899999999999998877754
No 102
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.19 E-value=1.4e-10 Score=101.72 Aligned_cols=70 Identities=26% Similarity=0.472 Sum_probs=57.8
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
+++++|+|||+||++|+.+.|.+.++++++++ .+.+..| |.+. ...+
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~----------~v~~~~V--D~~~---------------------~~~l 98 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKG----------QVNVADL--DATR---------------------ALNL 98 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCC----------CeEEEEe--cCcc---------------------cHHH
Confidence 57899999999999999999999999998864 3555555 4433 4578
Q ss_pred HHhCCCCccceEEEECCCCcEEEe
Q 021494 189 TKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
++.|+|.++||+++++ +|+++..
T Consensus 99 ~~~~~I~~~PTl~~f~-~G~~v~~ 121 (224)
T PTZ00443 99 AKRFAIKGYPTLLLFD-KGKMYQY 121 (224)
T ss_pred HHHcCCCcCCEEEEEE-CCEEEEe
Confidence 9999999999999995 7887765
No 103
>PTZ00062 glutaredoxin; Provisional
Probab=99.18 E-value=7.4e-11 Score=101.94 Aligned_cols=109 Identities=13% Similarity=0.056 Sum_probs=73.9
Q ss_pred CEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHH
Q 021494 110 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 189 (311)
Q Consensus 110 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 189 (311)
..++++|||+||++|+.+.|.|.++.++|. ++.++-|+ . .
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-----------~~~F~~V~--~-----------------------d---- 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP-----------SLEFYVVN--L-----------------------A---- 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC-----------CcEEEEEc--c-----------------------c----
Confidence 458999999999999999999999999875 35555553 2 1
Q ss_pred HhCCCCccceEEEECCCCcEEEeccchhhhcccccCCCCcHHHHHHHHHHHHHHhccCCC-----cccccCccccceeee
Q 021494 190 KYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPR-----SEFHIGHRHELNLVS 264 (311)
Q Consensus 190 ~~~~v~~~Pt~vlid~~G~iv~~~g~~~~~~~g~~~~p~~~~~i~~L~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 264 (311)
|+|.++|+++++ ++|+++.+ ..|..+ .+|...++...+..+. ++...-..+..++
T Consensus 58 --~~V~~vPtfv~~-~~g~~i~r-------~~G~~~--------~~~~~~~~~~~~~~~~~~~~~~v~~li~~~~Vvv-- 117 (204)
T PTZ00062 58 --DANNEYGVFEFY-QNSQLINS-------LEGCNT--------STLVSFIRGWAQKGSSEDTVEKIERLIRNHKILL-- 117 (204)
T ss_pred --cCcccceEEEEE-ECCEEEee-------eeCCCH--------HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCEEE--
Confidence 899999999999 89999988 445443 4455555554433222 1222223455555
Q ss_pred cCCCCCC---cccccccCC
Q 021494 265 EGTGGGP---FICCDCDEQ 280 (311)
Q Consensus 265 ~~~~~~~---~~Cd~C~~~ 280 (311)
.+++. +.|+.|++.
T Consensus 118 --f~Kg~~~~p~C~~C~~~ 134 (204)
T PTZ00062 118 --FMKGSKTFPFCRFSNAV 134 (204)
T ss_pred --EEccCCCCCCChhHHHH
Confidence 45543 577777753
No 104
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.15 E-value=1.5e-10 Score=101.54 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=50.2
Q ss_pred cCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHH
Q 021494 107 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 186 (311)
Q Consensus 107 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 186 (311)
+.+.++++.||++||++|+...+.++++..+. +++.+..|+.|. ..
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-----------~~i~~~~vD~~~-----------------------~~ 176 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-----------DKILGEMIEANE-----------------------NP 176 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-----------CceEEEEEeCCC-----------------------CH
Confidence 44456777799999999999988877766553 246666555544 45
Q ss_pred HHHHhCCCCccceEEEECCCCc
Q 021494 187 ELTKYFDVQGIPCLVIIGPEGK 208 (311)
Q Consensus 187 ~l~~~~~v~~~Pt~vlid~~G~ 208 (311)
++++.|+|.++||++|. .+|+
T Consensus 177 ~~~~~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 177 DLAEKYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred HHHHHhCCccCCEEEEe-cCCE
Confidence 88999999999999987 5565
No 105
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.15 E-value=2e-10 Score=88.17 Aligned_cols=72 Identities=25% Similarity=0.427 Sum_probs=58.1
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
+++++|+||++||++|+.+.|.+.++.+.++. ..++.++.++.+.. ...+
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~--------~~~~~~~~id~~~~----------------------~~~~ 67 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN--------EDDVVIAKVDADEA----------------------NKDL 67 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCC--------CCCEEEEEEECCCc----------------------chhh
Confidence 57899999999999999999999999999863 23566666665541 2378
Q ss_pred HHhCCCCccceEEEECCCCcEE
Q 021494 189 TKYFDVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~G~iv 210 (311)
++.|+|.++|++++++++|+..
T Consensus 68 ~~~~~i~~~P~~~~~~~~~~~~ 89 (105)
T cd02998 68 AKKYGVSGFPTLKFFPKGSTEP 89 (105)
T ss_pred HHhCCCCCcCEEEEEeCCCCCc
Confidence 9999999999999997776443
No 106
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.14 E-value=2.9e-10 Score=87.21 Aligned_cols=65 Identities=23% Similarity=0.442 Sum_probs=54.9
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
+++++|+||++||++|+.+.|.+.++++++.. .+.++.++.+. ...+
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~----------~~~~~~id~~~-----------------------~~~~ 64 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG----------IVKVGAVDADV-----------------------HQSL 64 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC----------CceEEEEECcc-----------------------hHHH
Confidence 46799999999999999999999999988864 46677776654 4578
Q ss_pred HHhCCCCccceEEEECCC
Q 021494 189 TKYFDVQGIPCLVIIGPE 206 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~ 206 (311)
++.|+|+++|++++++++
T Consensus 65 ~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 65 AQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred HHHCCCCccCEEEEECCC
Confidence 999999999999999644
No 107
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.13 E-value=5.6e-10 Score=89.06 Aligned_cols=79 Identities=18% Similarity=0.427 Sum_probs=57.7
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCc-hhHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD-PTIK 186 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~-d~~~ 186 (311)
.|+.++|+|+++|||+|+.+.|.|.++.++. ++.|..|++|.+.. ..... ....
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~------------~~~~y~vdvd~~~~-------------~~~~~~~~~~ 76 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT------------KAPIYYIDSENNGS-------------FEMSSLNDLT 76 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc------------CCcEEEEECCCccC-------------cCcccHHHHH
Confidence 3578999999999999999999999998873 35699999985420 00000 0023
Q ss_pred HHHHhCC----CCccceEEEECCCCcEEEe
Q 021494 187 ELTKYFD----VQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 187 ~l~~~~~----v~~~Pt~vlid~~G~iv~~ 212 (311)
++.+.|+ |.++||++++ ++|+.+.+
T Consensus 77 ~~~~~~~i~~~i~~~PT~v~~-k~Gk~v~~ 105 (122)
T TIGR01295 77 AFRSRFGIPTSFMGTPTFVHI-TDGKQVSV 105 (122)
T ss_pred HHHHHcCCcccCCCCCEEEEE-eCCeEEEE
Confidence 4555554 5679999999 89999887
No 108
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.12 E-value=8.7e-11 Score=102.95 Aligned_cols=71 Identities=18% Similarity=0.257 Sum_probs=55.9
Q ss_pred CCCEEEEEEec---CCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchh
Q 021494 108 VGKTVGLYFSA---RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 184 (311)
Q Consensus 108 ~gk~vll~F~a---~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~ 184 (311)
++.+.++.|++ +||++|+.+.|.+.++.+++. ++++..+++|.+.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-----------~~~i~~v~vd~~~--------------------- 65 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-----------KLKLEIYDFDTPE--------------------- 65 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-----------CceEEEEecCCcc---------------------
Confidence 33344555766 999999999999999988874 3567777777654
Q ss_pred HHHHHHhCCCCccceEEEECCCCcEEE
Q 021494 185 IKELTKYFDVQGIPCLVIIGPEGKTVT 211 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~~G~iv~ 211 (311)
..++++.|+|.++||+++++ +|+.+.
T Consensus 66 ~~~l~~~~~V~~~Pt~~~f~-~g~~~~ 91 (215)
T TIGR02187 66 DKEEAEKYGVERVPTTIILE-EGKDGG 91 (215)
T ss_pred cHHHHHHcCCCccCEEEEEe-CCeeeE
Confidence 56999999999999999994 666653
No 109
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.08 E-value=4.3e-10 Score=85.06 Aligned_cols=74 Identities=23% Similarity=0.369 Sum_probs=59.2
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
++++++|+||++||++|+.+.+.+.++.+.++. ..++.++.|+.+. ...
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~-----------------------~~~ 62 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG--------DGKVVVAKVDCTA-----------------------NND 62 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc--------CCceEEEEeeccc-----------------------hHH
Confidence 345899999999999999999999999998852 1256677666554 458
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+++.|+|.++|++++++++|+.+.+
T Consensus 63 ~~~~~~i~~~Pt~~~~~~~~~~~~~ 87 (101)
T cd02961 63 LCSEYGVRGYPTIKLFPNGSKEPVK 87 (101)
T ss_pred HHHhCCCCCCCEEEEEcCCCccccc
Confidence 9999999999999999877644443
No 110
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.7e-09 Score=88.94 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=95.7
Q ss_pred cCCCCCeEe----eCCCCceeeccccCCCEEEEEEe-cCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecC
Q 021494 86 TNHDRGYLL----GHPPDEKVPVSSLVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 160 (311)
Q Consensus 86 g~~~pdf~l----~~~g~~~v~l~~~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d 160 (311)
..++|+|.- +..-+ .++|++++||+|+++|| ..+.-.|..++-.+.+.+.+|++. +-+|+++|+|
T Consensus 7 ~~p~p~fk~~aVVdG~f~-e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~---------n~eVig~S~D 76 (196)
T KOG0852|consen 7 FKPAPDFKGTAVVDGEFK-EIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL---------NTEVLGISTD 76 (196)
T ss_pred CCCCCCcceeEEEcCcce-EEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc---------CCeEEEEecc
Confidence 345577753 66667 89999999999999999 467778999999999999999976 8999999999
Q ss_pred CC--HHHHHHHHhcCC---CcccccCchhHHHHHHhCCCC------ccceEEEECCCCcEEEec
Q 021494 161 RD--QTSFESYFGTMP---WLALPFGDPTIKELTKYFDVQ------GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 161 ~~--~~~~~~~~~~~~---~~~~p~~~d~~~~l~~~~~v~------~~Pt~vlid~~G~iv~~~ 213 (311)
.. .-+|...-++.+ -+++|...|.+.++++.|||- ++..++|||++|.++...
T Consensus 77 S~fshlAW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it 140 (196)
T KOG0852|consen 77 SVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQIT 140 (196)
T ss_pred chhhhhhHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEee
Confidence 74 345555544433 356999999999999999993 467899999999998753
No 111
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.08 E-value=3.3e-10 Score=90.68 Aligned_cols=102 Identities=15% Similarity=0.227 Sum_probs=66.1
Q ss_pred ccCCCEEEEEEecCCChhhHhhhHHH---HHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCc
Q 021494 106 SLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 182 (311)
Q Consensus 106 ~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~ 182 (311)
.-+||+|+|+|++.||++|+.+...+ .++.+..++ ++.+|-+..|.+. . +.
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~----------~Fv~V~l~~d~td-------~-----~~---- 73 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE----------DFIMLNLVHETTD-------K-----NL---- 73 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh----------CeEEEEEEeccCC-------C-----Cc----
Confidence 34689999999999999999998865 233333332 3433444433221 0 00
Q ss_pred hhHHHHHHhCCCCccceEEEECCCCcEEEeccchhhhcccccCCCCcHHHHHHHHHHHHHHhc
Q 021494 183 PTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAK 245 (311)
Q Consensus 183 d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~g~~~~~~~g~~~~p~~~~~i~~L~~~~~~~~~ 245 (311)
. ..+ .++|+++++|++|+++.+. ...++...|-+.+..+..|.+.++++..
T Consensus 74 ----~---~~g-~~vPtivFld~~g~vi~~i----~Gy~~~~~~~y~~~~~~~~~~~m~~a~~ 124 (130)
T cd02960 74 ----S---PDG-QYVPRIMFVDPSLTVRADI----TGRYSNRLYTYEPADIPLLIENMKKALK 124 (130)
T ss_pred ----C---ccC-cccCeEEEECCCCCCcccc----cccccCccceeCcCcHHHHHHHHHHHHH
Confidence 0 122 4799999999999999872 2234555666777888888887776443
No 112
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.07 E-value=1.7e-09 Score=85.05 Aligned_cols=64 Identities=17% Similarity=0.268 Sum_probs=53.4
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
++.++|+||++||++|+.+.|.|.++.+++ + .+.++.|+.|.. .++
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~----------~i~~~~vd~d~~-----------------------~~l 67 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D----------KLKLEIYDFDED-----------------------KEK 67 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C----------ceEEEEEeCCcC-----------------------HHH
Confidence 346889999999999999999999998775 2 477888877753 478
Q ss_pred HHhCCCCccceEEEECCC
Q 021494 189 TKYFDVQGIPCLVIIGPE 206 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~ 206 (311)
++.|+|.++||+++++.+
T Consensus 68 ~~~~~v~~vPt~~i~~~g 85 (113)
T cd02975 68 AEKYGVERVPTTIFLQDG 85 (113)
T ss_pred HHHcCCCcCCEEEEEeCC
Confidence 999999999999999643
No 113
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.05 E-value=1.1e-09 Score=94.23 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=56.0
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
+++|+|+||++||++|+.+.|.|.+++++|. .+.|+-|..+ . .
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-----------~vkFvkI~ad--~------------------------~ 144 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP-----------DTKFVKIIST--Q------------------------C 144 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC-----------CCEEEEEEhH--H------------------------h
Confidence 4699999999999999999999999999875 3556666543 1 2
Q ss_pred HHhCCCCccceEEEECCCCcEEEec
Q 021494 189 TKYFDVQGIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~G~iv~~~ 213 (311)
...|++.++||++++ ++|+++.+.
T Consensus 145 ~~~~~i~~lPTlliy-k~G~~v~~i 168 (192)
T cd02988 145 IPNYPDKNLPTILVY-RNGDIVKQF 168 (192)
T ss_pred HhhCCCCCCCEEEEE-ECCEEEEEE
Confidence 578999999999999 899999873
No 114
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=9.1e-10 Score=89.77 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=91.0
Q ss_pred HHHhcCCCCCeEe-eCCCCceeeccccCCC-EEEEEEe-cCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEe
Q 021494 82 INLLTNHDRGYLL-GHPPDEKVPVSSLVGK-TVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 158 (311)
Q Consensus 82 ~~~~g~~~pdf~l-~~~g~~~v~l~~~~gk-~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs 158 (311)
+--+|+.+|||+| |.||+ .++|..+.|+ +|+++|| +...|.|.++.-.++.-|++++.. +.+|+++|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~-sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka---------~aeV~GlS 131 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGK-SISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA---------GAEVIGLS 131 (211)
T ss_pred eeecCCcCCCcccccCCCC-eeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc---------CceEEeec
Confidence 3447999999999 99999 9999999885 8888888 567789999999999999999965 78999999
Q ss_pred cCCCHHHHHHHHhcCCCcccccCchhHHHHHHhCCCCccc-------eEEEECCCCc
Q 021494 159 TDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIP-------CLVIIGPEGK 208 (311)
Q Consensus 159 ~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~P-------t~vlid~~G~ 208 (311)
.|+.. ..+.|..+++ +.+..+.|+..++.+.+|+...| +.+|++++|.
T Consensus 132 ~D~s~-sqKaF~sKqn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~ 186 (211)
T KOG0855|consen 132 GDDSA-SQKAFASKQN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV 186 (211)
T ss_pred cCchH-HHHHhhhhcc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence 98753 3344444433 44555788888999999987544 6778876643
No 115
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.02 E-value=1.8e-09 Score=82.75 Aligned_cols=67 Identities=21% Similarity=0.445 Sum_probs=53.2
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
+++++|+||++||++|+.+.|.+.++.+.+++. .++.+..|+.+. . .+
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~--------~~~~~~~id~~~-----------------------~-~~ 65 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD--------DNVVIAKMDATA-----------------------N-DV 65 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC--------CCEEEEEEeCcc-----------------------h-hh
Confidence 589999999999999999999999999988752 245566555443 2 46
Q ss_pred HHhCCCCccceEEEECCCC
Q 021494 189 TKYFDVQGIPCLVIIGPEG 207 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~G 207 (311)
...+++.++|+++++.+++
T Consensus 66 ~~~~~~~~~Pt~~~~~~~~ 84 (104)
T cd02995 66 PSEFVVDGFPTILFFPAGD 84 (104)
T ss_pred hhhccCCCCCEEEEEcCCC
Confidence 6788999999999995444
No 116
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=9.2e-10 Score=104.71 Aligned_cols=133 Identities=25% Similarity=0.381 Sum_probs=84.5
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
.++.++|.||++||++|..+.|.+.++.+.++.. +...++|.+. +..
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~------------~~~~~vd~~~---------------------~~~ 92 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK------------VKIGAVDCDE---------------------HKD 92 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc------------eEEEEeCchh---------------------hHH
Confidence 3468999999999999999999999998888743 5556667666 779
Q ss_pred HHHhCCCCccceEEEECCCCcEEEeccchhhhcccccCCCCcHHHHHHHHHHHHHHhccCCCc-ccccCcc--ccce---
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEEEAKNLPRS-EFHIGHR--HELN--- 261 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~~g~~~~~~~g~~~~p~~~~~i~~L~~~~~~~~~~~~~~-~~~~~~~--~~~~--- 261 (311)
+++.|+|+++||+.++.++.+++...+ ....+...+.+...+......+... +...... ...+
T Consensus 93 ~~~~y~i~gfPtl~~f~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 161 (383)
T KOG0191|consen 93 LCEKYGIQGFPTLKVFRPGKKPIDYSG-----------PRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDS 161 (383)
T ss_pred HHHhcCCccCcEEEEEcCCCceeeccC-----------cccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhcc
Confidence 999999999999999977645555433 1112223333333333322222222 2221111 0000
Q ss_pred eeecCCCCCCcccccccCCCcce
Q 021494 262 LVSEGTGGGPFICCDCDEQGSGW 284 (311)
Q Consensus 262 ~~~~~~~~~~~~Cd~C~~~g~~w 284 (311)
-..+.....++||.+|+++-+.|
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~ 184 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEW 184 (383)
T ss_pred CcceEEEEeccccHHhhhcChHH
Confidence 01122345689999999997766
No 117
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.99 E-value=1.2e-09 Score=105.02 Aligned_cols=70 Identities=16% Similarity=0.280 Sum_probs=58.3
Q ss_pred cCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHH
Q 021494 107 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 186 (311)
Q Consensus 107 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 186 (311)
.++++|||+|||+||++|+.+.|.+.++++++++. ++.|+.|++|.+. ..
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~---------~v~~~kVdvD~~~---------------------~~ 418 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS---------GVKVAKFRADGDQ---------------------KE 418 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC---------CcEEEEEECCCCc---------------------cH
Confidence 36789999999999999999999999999998743 5788888888653 23
Q ss_pred HHHHhCCCCccceEEEECCC
Q 021494 187 ELTKYFDVQGIPCLVIIGPE 206 (311)
Q Consensus 187 ~l~~~~~v~~~Pt~vlid~~ 206 (311)
...+.|+|.++||++|+.++
T Consensus 419 ~~~~~~~I~~~PTii~Fk~g 438 (463)
T TIGR00424 419 FAKQELQLGSFPTILFFPKH 438 (463)
T ss_pred HHHHHcCCCccceEEEEECC
Confidence 34578999999999999543
No 118
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.98 E-value=9.4e-10 Score=109.49 Aligned_cols=75 Identities=23% Similarity=0.462 Sum_probs=58.7
Q ss_pred ccCCCEEEEEEecCCChhhHhhhHHH---HHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCc
Q 021494 106 SLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 182 (311)
Q Consensus 106 ~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~ 182 (311)
..+||+|+|+|||+||++|+.+.+.+ .++.++++ ++.++.|+++++.+
T Consensus 471 ~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-----------~~~~v~vDvt~~~~------------------ 521 (571)
T PRK00293 471 KGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-----------DTVLLQADVTANNA------------------ 521 (571)
T ss_pred HhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-----------CCEEEEEECCCCCh------------------
Confidence 34689999999999999999988764 44555543 46677777665321
Q ss_pred hhHHHHHHhCCCCccceEEEECCCCcEE
Q 021494 183 PTIKELTKYFDVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 183 d~~~~l~~~~~v~~~Pt~vlid~~G~iv 210 (311)
...++.++|++.++|+++++|++|+++
T Consensus 522 -~~~~l~~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 522 -EDVALLKHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred -hhHHHHHHcCCCCCCEEEEECCCCCCc
Confidence 156889999999999999999999985
No 119
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.97 E-value=5.7e-09 Score=76.62 Aligned_cols=62 Identities=15% Similarity=0.312 Sum_probs=50.6
Q ss_pred EEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHh
Q 021494 112 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 191 (311)
Q Consensus 112 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 191 (311)
.+..||++||++|+...|.|.++++++.. .+.++.|+.+.+ .++.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~----------~~~~~~vd~~~~-----------------------~~~~~~ 48 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD----------AVEVEYINVMEN-----------------------PQKAME 48 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC----------ceEEEEEeCccC-----------------------HHHHHH
Confidence 46789999999999999999999988863 477778877654 367788
Q ss_pred CCCCccceEEEECCCCcE
Q 021494 192 FDVQGIPCLVIIGPEGKT 209 (311)
Q Consensus 192 ~~v~~~Pt~vlid~~G~i 209 (311)
|++.++|++++ +|+.
T Consensus 49 ~~v~~vPt~~~---~g~~ 63 (82)
T TIGR00411 49 YGIMAVPAIVI---NGDV 63 (82)
T ss_pred cCCccCCEEEE---CCEE
Confidence 99999999886 5654
No 120
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.93 E-value=6.7e-09 Score=76.88 Aligned_cols=68 Identities=31% Similarity=0.589 Sum_probs=56.9
Q ss_pred CEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHH
Q 021494 110 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 189 (311)
Q Consensus 110 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 189 (311)
++++|+||++||++|..+.+.+.++.+. . .++.++.|+.+.. ..+.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~----------~~~~~~~i~~~~~-----------------------~~~~ 56 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y----------PKVKFVKVDVDEN-----------------------PELA 56 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-C----------CCceEEEEECCCC-----------------------hhHH
Confidence 7899999999999999999999998877 2 2577888877653 4788
Q ss_pred HhCCCCccceEEEECCCCcEEEe
Q 021494 190 KYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 190 ~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+.|++.++|+++++ .+|+++..
T Consensus 57 ~~~~v~~~P~~~~~-~~g~~~~~ 78 (93)
T cd02947 57 EEYGVRSIPTFLFF-KNGKEVDR 78 (93)
T ss_pred HhcCcccccEEEEE-ECCEEEEE
Confidence 99999999999999 56776655
No 121
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.2e-08 Score=80.99 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=85.9
Q ss_pred CCCeEe-eCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC------
Q 021494 89 DRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR------ 161 (311)
Q Consensus 89 ~pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~------ 161 (311)
.-+|.+ +.+|+ ++++++++||++||.-.|+.|+.-. +...|+.||++|+++ +++|+++..+.
T Consensus 5 ~yd~~~~~~~G~-~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~---------Gf~VLgFPcNQF~~QEP 73 (162)
T COG0386 5 IYDFSVKDIDGE-PVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDK---------GFEVLGFPCNQFGGQEP 73 (162)
T ss_pred cccceeeccCCC-CccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhC---------CcEEEeccccccccCCC
Confidence 346777 99999 9999999999999999999998777 455689999999976 99999998863
Q ss_pred -CHHHHHHHHhcCCCcccccCch-------h---HHHHHHhCC----CCcc---ceEEEECCCCcEEEec
Q 021494 162 -DQTSFESYFGTMPWLALPFGDP-------T---IKELTKYFD----VQGI---PCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 162 -~~~~~~~~~~~~~~~~~p~~~d-------~---~~~l~~~~~----v~~~---Pt~vlid~~G~iv~~~ 213 (311)
+.+++.++....-...||+... . -+.|..... -..+ =+-+|||++|+||.|.
T Consensus 74 g~~eEI~~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf 143 (162)
T COG0386 74 GSDEEIAKFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRF 143 (162)
T ss_pred CCHHHHHHHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEee
Confidence 5678999988554467765321 1 122333221 1111 2789999999999994
No 122
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.91 E-value=2.1e-08 Score=78.81 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=57.6
Q ss_pred ccccCCCEEEEEEecCCChhhHhhhHHH---HHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCccccc
Q 021494 104 VSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 180 (311)
Q Consensus 104 l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~ 180 (311)
.+.-++|+++|+|+++||++|..+...+ .++.+.+.+ ++.++.++++...
T Consensus 12 ~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~----------~~v~~~~d~~~~e----------------- 64 (114)
T cd02958 12 EAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE----------NFIFWQCDIDSSE----------------- 64 (114)
T ss_pred HHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh----------CEEEEEecCCCcc-----------------
Confidence 3344689999999999999999987643 334444443 3444444443322
Q ss_pred CchhHHHHHHhCCCCccceEEEECC-CCcEEEe
Q 021494 181 GDPTIKELTKYFDVQGIPCLVIIGP-EGKTVTK 212 (311)
Q Consensus 181 ~~d~~~~l~~~~~v~~~Pt~vlid~-~G~iv~~ 212 (311)
...+++.|++.++|+++++|+ +|+++.+
T Consensus 65 ----~~~~~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 65 ----GQRFLQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred ----HHHHHHHhCccCCCeEEEEeCccCcEeEE
Confidence 457899999999999999999 8999987
No 123
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.88 E-value=1.2e-08 Score=98.78 Aligned_cols=155 Identities=18% Similarity=0.235 Sum_probs=89.9
Q ss_pred cccccCCHHHHHHHHhhcccC--CCCeeEEecCCCCCCceeechhhHHHhhhccccCcccHHHHHHHHHHHH-HHHHHHH
Q 021494 4 LAVPYSDLETKKALNRKFDIE--GIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEK-EKHERQT 80 (311)
Q Consensus 4 ~a~p~~d~~~~~~l~~~~~i~--~~P~l~~~~~~~~~g~~~~~~~~~~v~~~~~~~~p~~~~~~~~l~~~~~-~~~~~~~ 80 (311)
+.+-+.|.+...++.+.|++. .+|++++++. ++... ..+.. ..++.+.+.+...... .+..
T Consensus 269 i~f~~~d~~~~~~~~~~~~~~~~~~P~~vi~~~---~~~~~--------y~~~~--~~~~~~~i~~fi~~~~~g~~~--- 332 (462)
T TIGR01130 269 VNFAVADEEDFGRELEYFGLKAEKFPAVAIQDL---EGNKK--------YPMDQ--EEFSSENLEAFVKDFLDGKLK--- 332 (462)
T ss_pred EEEEEecHHHhHHHHHHcCCCccCCceEEEEeC---Ccccc--------cCCCc--CCCCHHHHHHHHHHHhcCCCC---
Confidence 344556777778899999998 6999999885 43110 00000 0223333333211111 0000
Q ss_pred HHHHhcCCCCCe----EeeCCCCceeecc-ccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEE
Q 021494 81 LINLLTNHDRGY----LLGHPPDEKVPVS-SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVV 155 (311)
Q Consensus 81 ~~~~~g~~~pdf----~l~~~g~~~v~l~-~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv 155 (311)
......+.|.- .....|. .+.-. .-.++.++|+|||+||++|+.+.|.+.++++.++.. ...+.++
T Consensus 333 -~~~~se~~p~~~~~~v~~l~~~-~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------~~~i~~~ 403 (462)
T TIGR01130 333 -PYLKSEPIPEDDEGPVKVLVGK-NFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDA-------ESDVVIA 403 (462)
T ss_pred -eeeccCCCCccCCCccEEeeCc-CHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcC-------CCcEEEE
Confidence 00111122221 1122333 22211 114789999999999999999999999999998852 1257777
Q ss_pred EEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhCCCCccceEEEECCCCc
Q 021494 156 FVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 208 (311)
Q Consensus 156 ~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~ 208 (311)
.|+.+.+. +.. |++.++|+++++.++++
T Consensus 404 ~id~~~n~------------------------~~~-~~i~~~Pt~~~~~~~~~ 431 (462)
T TIGR01130 404 KMDATAND------------------------VPP-FEVEGFPTIKFVPAGKK 431 (462)
T ss_pred EEECCCCc------------------------cCC-CCccccCEEEEEeCCCC
Confidence 77665432 223 89999999999965554
No 124
>PTZ00102 disulphide isomerase; Provisional
Probab=98.85 E-value=7.8e-09 Score=100.87 Aligned_cols=72 Identities=22% Similarity=0.425 Sum_probs=57.9
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
+++.++|+|||+||++|+++.|.+.++++.+... ..++.+..| |.+. ...
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~-------~~~i~~~~v--d~~~---------------------~~~ 97 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEK-------KSEIVLASV--DATE---------------------EME 97 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhc-------CCcEEEEEE--ECCC---------------------CHH
Confidence 5789999999999999999999999999888754 234555555 4443 558
Q ss_pred HHHhCCCCccceEEEECCCCcE
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKT 209 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~i 209 (311)
++++|+|.++||+++++.++.+
T Consensus 98 l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 98 LAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred HHHhcCCCcccEEEEEECCceE
Confidence 9999999999999999665544
No 125
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.84 E-value=1.3e-08 Score=98.69 Aligned_cols=71 Identities=24% Similarity=0.439 Sum_probs=57.7
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
++++++|+|||+||++|+.+.|.+.++++.+... +.++.++.|+.+. ..+
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~-------~~~v~~~~vd~~~-----------------------~~~ 66 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKK-------GPPIKLAKVDATE-----------------------EKD 66 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhc-------CCceEEEEEECCC-----------------------cHH
Confidence 4678999999999999999999999999988764 3346666665544 458
Q ss_pred HHHhCCCCccceEEEECCCCcE
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKT 209 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~i 209 (311)
+++.|+|.++||++++ ++|+.
T Consensus 67 l~~~~~i~~~Pt~~~~-~~g~~ 87 (462)
T TIGR01130 67 LAQKYGVSGYPTLKIF-RNGED 87 (462)
T ss_pred HHHhCCCccccEEEEE-eCCcc
Confidence 9999999999999999 45554
No 126
>PLN02309 5'-adenylylsulfate reductase
Probab=98.83 E-value=1.9e-08 Score=96.88 Aligned_cols=68 Identities=18% Similarity=0.338 Sum_probs=56.2
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
++++++|+|||+||++|+.+.|.+.+++++|... ++.|+.|+.|.+ ...
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~---------~V~f~kVD~d~~----------------------~~~ 412 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS---------GVKVAKFRADGD----------------------QKE 412 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC---------CeEEEEEECCCc----------------------chH
Confidence 5789999999999999999999999999998743 688888877732 235
Q ss_pred HHH-hCCCCccceEEEECCC
Q 021494 188 LTK-YFDVQGIPCLVIIGPE 206 (311)
Q Consensus 188 l~~-~~~v~~~Pt~vlid~~ 206 (311)
+++ .|+|.++||++|+.++
T Consensus 413 la~~~~~I~~~PTil~f~~g 432 (457)
T PLN02309 413 FAKQELQLGSFPTILLFPKN 432 (457)
T ss_pred HHHhhCCCceeeEEEEEeCC
Confidence 564 6999999999999543
No 127
>PHA02125 thioredoxin-like protein
Probab=98.82 E-value=2.2e-08 Score=72.78 Aligned_cols=57 Identities=30% Similarity=0.606 Sum_probs=42.2
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
+++||++||++|+...|.|.++ . ++++ .+|.+. ..++++.|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~----~------------~~~~--~vd~~~---------------------~~~l~~~~ 42 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV----E------------YTYV--DVDTDE---------------------GVELTAKH 42 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH----h------------heEE--eeeCCC---------------------CHHHHHHc
Confidence 7899999999999999987542 1 2244 444333 45899999
Q ss_pred CCCccceEEEECCCCcEEEe
Q 021494 193 DVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 193 ~v~~~Pt~vlid~~G~iv~~ 212 (311)
+|.++||++ +|+.+.+
T Consensus 43 ~v~~~PT~~----~g~~~~~ 58 (75)
T PHA02125 43 HIRSLPTLV----NTSTLDR 58 (75)
T ss_pred CCceeCeEE----CCEEEEE
Confidence 999999987 5666654
No 128
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=7.3e-08 Score=91.72 Aligned_cols=141 Identities=23% Similarity=0.363 Sum_probs=89.0
Q ss_pred CCHHHHHHHHhhcccCCCCeeEEecCCCCCCceeechh---hHHHhhhccccCcccHHHHHHHHHHHHHHHHHHHHHHHh
Q 021494 9 SDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG---VELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLL 85 (311)
Q Consensus 9 ~d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~~~~~---~~~v~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 85 (311)
-|++.++.+++.|+|.|+||+.++.+ ....+...+ ...+..+ . ...+...+
T Consensus 85 vd~~~~~~~~~~y~i~gfPtl~~f~~---~~~~~~~~~~~~~~~~~~~--------------~---------~~~~~~~~ 138 (383)
T KOG0191|consen 85 VDCDEHKDLCEKYGIQGFPTLKVFRP---GKKPIDYSGPRNAESLAEF--------------L---------IKELEPSV 138 (383)
T ss_pred eCchhhHHHHHhcCCccCcEEEEEcC---CCceeeccCcccHHHHHHH--------------H---------HHhhcccc
Confidence 37788999999999999999999996 223443332 1111111 0 01111111
Q ss_pred cCCCCC--eEeeCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCH
Q 021494 86 TNHDRG--YLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 163 (311)
Q Consensus 86 g~~~pd--f~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~ 163 (311)
....+. +.+..++- -.........+++.|+++||++|+.++|.+.++...+.. ...+++..++.+ .
T Consensus 139 ~~~~~~~v~~l~~~~~--~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~--------~~~v~~~~~d~~--~ 206 (383)
T KOG0191|consen 139 KKLVEGEVFELTKDNF--DETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS--------KENVELGKIDAT--V 206 (383)
T ss_pred ccccCCceEEccccch--hhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhcc--------CcceEEEeeccc--h
Confidence 222222 11111111 000111245789999999999999999999999998864 135667666554 3
Q ss_pred HHHHHHHhcCCCcccccCchhHHHHHHhCCCCccceEEEECCCCc
Q 021494 164 TSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGK 208 (311)
Q Consensus 164 ~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~ 208 (311)
...++..++|..+|++.++-++..
T Consensus 207 ---------------------~~~~~~~~~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 207 ---------------------HKSLASRLEVRGYPTLKLFPPGEE 230 (383)
T ss_pred ---------------------HHHHhhhhcccCCceEEEecCCCc
Confidence 568999999999999999965555
No 129
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.77 E-value=3.5e-08 Score=69.75 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=49.2
Q ss_pred EEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHh
Q 021494 112 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 191 (311)
Q Consensus 112 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 191 (311)
-+..|+++||++|+...+.|.++.+.+ +++.+..+++|.+ .++++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-----------~~i~~~~id~~~~-----------------------~~l~~~ 47 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-----------PNISAEMIDAAEF-----------------------PDLADE 47 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-----------CceEEEEEEcccC-----------------------HhHHHH
Confidence 367899999999999999998886542 2577777776653 368899
Q ss_pred CCCCccceEEEECCCCcEEEe
Q 021494 192 FDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 192 ~~v~~~Pt~vlid~~G~iv~~ 212 (311)
|++.++|++++ +|+++..
T Consensus 48 ~~i~~vPti~i---~~~~~~~ 65 (67)
T cd02973 48 YGVMSVPAIVI---NGKVEFV 65 (67)
T ss_pred cCCcccCEEEE---CCEEEEe
Confidence 99999999765 4566654
No 130
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.77 E-value=4.2e-08 Score=75.24 Aligned_cols=64 Identities=22% Similarity=0.369 Sum_probs=54.9
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
|+++++.|+++||++|..+.|.+.+++++++++ +.++.|+.|. ...+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~----------v~f~~vd~~~-----------------------~~~~ 58 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK----------LLFVVVDADD-----------------------FGRH 58 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe----------EEEEEEchHh-----------------------hHHH
Confidence 789999999999999999999999999999753 5666665544 4478
Q ss_pred HHhCCCC--ccceEEEECC
Q 021494 189 TKYFDVQ--GIPCLVIIGP 205 (311)
Q Consensus 189 ~~~~~v~--~~Pt~vlid~ 205 (311)
++.|++. ++|++++++.
T Consensus 59 ~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 59 LEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred HHHcCCChhhCCEEEEEec
Confidence 9999999 9999999976
No 131
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.3e-08 Score=97.82 Aligned_cols=89 Identities=20% Similarity=0.338 Sum_probs=67.1
Q ss_pred CCCeEeeCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHH
Q 021494 89 DRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFES 168 (311)
Q Consensus 89 ~pdf~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~ 168 (311)
+...++-.++. .+...-.....++|.|||+||++|++++|.+.+.+..++.. ++.+ ....+|.+.
T Consensus 23 ~~~~Vl~Lt~d-nf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~-------~s~i--~LakVDat~----- 87 (493)
T KOG0190|consen 23 AEEDVLVLTKD-NFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEE-------GSPV--KLAKVDATE----- 87 (493)
T ss_pred cccceEEEecc-cHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhcc-------CCCc--eeEEeecch-----
Confidence 34455533333 33333334568999999999999999999999999999875 3444 444556666
Q ss_pred HHhcCCCcccccCchhHHHHHHhCCCCccceEEEECCCCcE
Q 021494 169 YFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKT 209 (311)
Q Consensus 169 ~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~i 209 (311)
.+.++.+|+|+++||+-|+ .+|+.
T Consensus 88 ----------------~~~~~~~y~v~gyPTlkiF-rnG~~ 111 (493)
T KOG0190|consen 88 ----------------ESDLASKYEVRGYPTLKIF-RNGRS 111 (493)
T ss_pred ----------------hhhhHhhhcCCCCCeEEEE-ecCCc
Confidence 6799999999999999999 88885
No 132
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.72 E-value=4.2e-08 Score=71.47 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=46.5
Q ss_pred EEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhCC
Q 021494 114 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 193 (311)
Q Consensus 114 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 193 (311)
|.||++||++|+.+.|.+.++.+++.. .+.+ +.+|+ . ..+..|+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~----------~~~~--~~v~~-~-----------------------~~a~~~~ 46 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGI----------DAEF--EKVTD-M-----------------------NEILEAG 46 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCC----------CeEE--EEeCC-H-----------------------HHHHHcC
Confidence 789999999999999999999998753 3455 44442 1 1256799
Q ss_pred CCccceEEEECCCCcEEEe
Q 021494 194 VQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 194 v~~~Pt~vlid~~G~iv~~ 212 (311)
+.++|++++ +|+++..
T Consensus 47 v~~vPti~i---~G~~~~~ 62 (76)
T TIGR00412 47 VTATPGVAV---DGELVIM 62 (76)
T ss_pred CCcCCEEEE---CCEEEEE
Confidence 999999998 8887743
No 133
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.68 E-value=7.8e-08 Score=72.28 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=58.0
Q ss_pred cccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchh
Q 021494 105 SSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 184 (311)
Q Consensus 105 ~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~ 184 (311)
.++++.+.+..|+++||++|....+.+.++.+++. ++.+..++.|.
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~-----------~i~~~~vd~~~----------------------- 53 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP-----------NIEHEMIDGAL----------------------- 53 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC-----------CceEEEEEhHh-----------------------
Confidence 35777888999999999999999999888887643 57777777665
Q ss_pred HHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 185 IKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
..++++.|+|.++|++++ +|+++..
T Consensus 54 ~~e~a~~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 54 FQDEVEERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred CHHHHHHcCCccCCEEEE---CCEEEEe
Confidence 347899999999999975 6888775
No 134
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.59 E-value=2.1e-07 Score=73.16 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=45.8
Q ss_pred CCCEEEEEEec--CCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC---CHHHHHHHHhcCCCcccccCc
Q 021494 108 VGKTVGLYFSA--RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQTSFESYFGTMPWLALPFGD 182 (311)
Q Consensus 108 ~gk~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~---~~~~~~~~~~~~~~~~~p~~~ 182 (311)
+.+.+||.|+| +||+ + .|...+|+.+|... ...+.|.-|.+|+ ..
T Consensus 17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~a-------a~~v~lakVd~~d~~~~~------------------- 66 (116)
T cd03007 17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASA-------TDDLLVAEVGIKDYGEKL------------------- 66 (116)
T ss_pred cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhh-------cCceEEEEEecccccchh-------------------
Confidence 45789999999 5555 3 36666666666543 2235555555543 22
Q ss_pred hhHHHHHHhCCCC--ccceEEEECCCC
Q 021494 183 PTIKELTKYFDVQ--GIPCLVIIGPEG 207 (311)
Q Consensus 183 d~~~~l~~~~~v~--~~Pt~vlid~~G 207 (311)
+.+|+++|+|+ ++||+.|+. +|
T Consensus 67 --~~~L~~~y~I~~~gyPTl~lF~-~g 90 (116)
T cd03007 67 --NMELGERYKLDKESYPVIYLFH-GG 90 (116)
T ss_pred --hHHHHHHhCCCcCCCCEEEEEe-CC
Confidence 56899999999 999999994 44
No 135
>smart00594 UAS UAS domain.
Probab=98.58 E-value=6.4e-07 Score=71.37 Aligned_cols=73 Identities=15% Similarity=0.312 Sum_probs=54.0
Q ss_pred ccccCCCEEEEEEecCCChhhHhhhHHH---HHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCccccc
Q 021494 104 VSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 180 (311)
Q Consensus 104 l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~ 180 (311)
.+.-++|.++|+|+++||++|..+...+ .++.+.+.+ ++.++.++++...
T Consensus 22 ~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~----------~fv~~~~dv~~~e----------------- 74 (122)
T smart00594 22 EASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE----------NFIFWQVDVDTSE----------------- 74 (122)
T ss_pred HHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc----------CEEEEEecCCChh-----------------
Confidence 3344678999999999999999988754 334444432 3455555544433
Q ss_pred CchhHHHHHHhCCCCccceEEEECCCC
Q 021494 181 GDPTIKELTKYFDVQGIPCLVIIGPEG 207 (311)
Q Consensus 181 ~~d~~~~l~~~~~v~~~Pt~vlid~~G 207 (311)
...+++.|++.++|+++++|++|
T Consensus 75 ----g~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 75 ----GQRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred ----HHHHHHhcCcCCCCEEEEEecCC
Confidence 45899999999999999999987
No 136
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.58 E-value=1.3e-07 Score=69.84 Aligned_cols=46 Identities=30% Similarity=0.619 Sum_probs=33.1
Q ss_pred ccCCCEEEEEEecCCChhhHhhhHHH---HHHHHHHHhhhhhcCCCCCCeEEEEEecCC
Q 021494 106 SLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDR 161 (311)
Q Consensus 106 ~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~ 161 (311)
.-+||+++|+|+++||++|+.+...+ .++.+.+.+ ++..+-|..+.
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~----------~fv~v~vd~~~ 62 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK----------NFVLVKVDVDD 62 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH----------CSEEEEEETTT
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC----------CEEEEEEEcCC
Confidence 34689999999999999999998876 334443554 46666666544
No 137
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=7.4e-07 Score=73.10 Aligned_cols=117 Identities=16% Similarity=0.202 Sum_probs=85.1
Q ss_pred CCCCeEe-eCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC-----
Q 021494 88 HDRGYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR----- 161 (311)
Q Consensus 88 ~~pdf~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~----- 161 (311)
..-+|+. +.+|+ .++++.++||++||.-.|+-|+.-...-..|..|+++|+++ +++|++..++.
T Consensus 13 siydf~~~d~~G~-~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~---------Gl~ILaFPCNQFg~QE 82 (171)
T KOG1651|consen 13 SIYDFSAKDLDGE-YVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ---------GLEILAFPCNQFGNQE 82 (171)
T ss_pred ceeeeEEecCCCC-CccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC---------CeEEEEeccccccCcC
Confidence 3457888 99999 99999999999999999999999887788999999999976 89999998863
Q ss_pred --CHHHHHHHHhcCCCcccccCc------hhHHHHHHhCCCC-------cc---ceEEEECCCCcEEEecc
Q 021494 162 --DQTSFESYFGTMPWLALPFGD------PTIKELTKYFDVQ-------GI---PCLVIIGPEGKTVTKQG 214 (311)
Q Consensus 162 --~~~~~~~~~~~~~~~~~p~~~------d~~~~l~~~~~v~-------~~---Pt~vlid~~G~iv~~~g 214 (311)
..+++..++.......+|+.. +...-+.+.+.-. .| =+-+|||++|+++.|.+
T Consensus 83 p~~n~Ei~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 83 PGSNEEILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred CCCcHHHHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 335666776643334444321 1112222222111 22 27899999999999954
No 138
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=7.1e-07 Score=73.67 Aligned_cols=118 Identities=14% Similarity=0.272 Sum_probs=95.2
Q ss_pred hcCCCCCeEeeCCCCceeeccccCCCEEEEEEe--cCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC-
Q 021494 85 LTNHDRGYLLGHPPDEKVPVSSLVGKTVGLYFS--ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR- 161 (311)
Q Consensus 85 ~g~~~pdf~l~~~g~~~v~l~~~~gk~vll~F~--a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~- 161 (311)
+|+.+|+|..+..-. .+.+.++.|.-..|.|. |...|.|..++..+.++.-+|.++ ++..++.|+|+
T Consensus 8 lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR---------nvKlialS~d~v 77 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR---------NVKLIALSVDDV 77 (224)
T ss_pred ccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc---------CceEEEeehhhH
Confidence 799999999965555 69999999987777777 678899999999999999999977 89999999997
Q ss_pred -CHHHHHHHHhcC----C-CcccccCchhHHHHHHhCCCC------------ccceEEEECCCCcEEEe
Q 021494 162 -DQTSFESYFGTM----P-WLALPFGDPTIKELTKYFDVQ------------GIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 162 -~~~~~~~~~~~~----~-~~~~p~~~d~~~~l~~~~~v~------------~~Pt~vlid~~G~iv~~ 212 (311)
+...|.+-++.+ + -+.+|+..|.+++++-.|+.- ....+++||++.+|.-.
T Consensus 78 esH~~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs 146 (224)
T KOG0854|consen 78 ESHKDWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLS 146 (224)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEE
Confidence 445665555422 2 367788888899999888762 24588999999999765
No 139
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4e-07 Score=87.62 Aligned_cols=66 Identities=27% Similarity=0.499 Sum_probs=50.1
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
.+|-|||.|||+||+||+++.|.+++|.+.|++. ++ ||...+|.+. +.
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~--------~~--vviAKmDaTa---------------------Nd- 430 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD--------EN--VVIAKMDATA---------------------ND- 430 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCC--------CC--cEEEEecccc---------------------cc-
Confidence 5688999999999999999999999999999863 34 5555556543 11
Q ss_pred HHHhCCCCccceEEEECCC
Q 021494 188 LTKYFDVQGIPCLVIIGPE 206 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~ 206 (311)
.....+.++||++++-.+
T Consensus 431 -~~~~~~~~fPTI~~~pag 448 (493)
T KOG0190|consen 431 -VPSLKVDGFPTILFFPAG 448 (493)
T ss_pred -CccccccccceEEEecCC
Confidence 223457779999999433
No 140
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.56 E-value=1.8e-08 Score=59.71 Aligned_cols=29 Identities=38% Similarity=1.165 Sum_probs=14.3
Q ss_pred cccccccCCCcc-eeEeCCCCCCCcccccc
Q 021494 272 FICCDCDEQGSG-WAYQCLECGYEVHPKCV 300 (311)
Q Consensus 272 ~~Cd~C~~~g~~-w~~~C~~c~~~~h~~c~ 300 (311)
+.|+.|++.+.+ |.|.|.+|+|+||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 369999999998 99999999999999997
No 141
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.55 E-value=3.6e-07 Score=81.70 Aligned_cols=75 Identities=21% Similarity=0.402 Sum_probs=67.3
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
...|+|.|+|.||+.++.+.|.+.+.+++++++ .++=.+|+.++|++. ...+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e-------~P~~kvvwg~VDcd~---------------------e~~i 64 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE-------FPEGKVVWGKVDCDK---------------------EDDI 64 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh-------CCCcceEEEEcccch---------------------hhHH
Confidence 357999999999999999999999999999987 566778999999987 6689
Q ss_pred HHhCCCCccceEEEECCCCcEEEe
Q 021494 189 TKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+.+|.|..+||+-|+ .+|.+..+
T Consensus 65 a~ky~I~KyPTlKvf-rnG~~~~r 87 (375)
T KOG0912|consen 65 ADKYHINKYPTLKVF-RNGEMMKR 87 (375)
T ss_pred hhhhccccCceeeee-eccchhhh
Confidence 999999999999999 88888765
No 142
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.54 E-value=6.1e-08 Score=86.38 Aligned_cols=75 Identities=20% Similarity=0.415 Sum_probs=60.3
Q ss_pred CEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHH
Q 021494 110 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 189 (311)
Q Consensus 110 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 189 (311)
...+|.|||+||.+|+++.|.+.+.--++++- ++.|-.-.+|.+. -..++
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdi---------g~PikVGKlDaT~---------------------f~aiA 93 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDI---------GLPIKVGKLDATR---------------------FPAIA 93 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhc---------CCceeeccccccc---------------------chhhH
Confidence 58999999999999999999999888777754 5666666677765 56899
Q ss_pred HhCCCCccceEEEECCCCcEE-Eeccc
Q 021494 190 KYFDVQGIPCLVIIGPEGKTV-TKQGR 215 (311)
Q Consensus 190 ~~~~v~~~Pt~vlid~~G~iv-~~~g~ 215 (311)
..|+|+++||+.++ ++|-.+ +|.||
T Consensus 94 nefgiqGYPTIk~~-kgd~a~dYRG~R 119 (468)
T KOG4277|consen 94 NEFGIQGYPTIKFF-KGDHAIDYRGGR 119 (468)
T ss_pred hhhccCCCceEEEe-cCCeeeecCCCc
Confidence 99999999999999 555544 55554
No 143
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1e-06 Score=71.21 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=94.5
Q ss_pred hcCCCCCeEe-eCCCCceeeccccCCCEE-EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCC
Q 021494 85 LTNHDRGYLL-GHPPDEKVPVSSLVGKTV-GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 162 (311)
Q Consensus 85 ~g~~~pdf~l-~~~g~~~v~l~~~~gk~v-ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~ 162 (311)
+|+.+|+|++ +.+.. .+++.++.||.. +..|-+--.+.|......+++...++. +..|+.||.|-.
T Consensus 20 vGd~ap~ftl~~~dL~-~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~-----------~~~Vl~IS~DLP 87 (158)
T COG2077 20 VGDKAPDFTLVGKDLN-DVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG-----------NTVVLCISMDLP 87 (158)
T ss_pred cCCcCCceEEEcCccc-ceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC-----------CcEEEEEeCCCh
Confidence 6999999999 88888 999999999864 555667788999999999988887765 578999999864
Q ss_pred HHHHHHHHhcCCCcccccCch-hHHHHHHhCCCC--cc-------ceEEEECCCCcEEEeccchh
Q 021494 163 QTSFESYFGTMPWLALPFGDP-TIKELTKYFDVQ--GI-------PCLVIIGPEGKTVTKQGRNL 217 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~~p~~~d-~~~~l~~~~~v~--~~-------Pt~vlid~~G~iv~~~g~~~ 217 (311)
-+..+|....+.-++...+| .+..+-+.||+. .. .+.+++|.+|+|++..-...
T Consensus 88 -FAq~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~e 151 (158)
T COG2077 88 -FAQKRFCGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVPE 151 (158)
T ss_pred -hHHhhhhhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccch
Confidence 35677787777666666666 455788999972 33 48899999999999854433
No 144
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.50 E-value=5.1e-07 Score=79.01 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=67.0
Q ss_pred ccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCch
Q 021494 104 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 183 (311)
Q Consensus 104 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d 183 (311)
+.++.+++-|++|+.+.|++|..+.|.|+.+.++| ++.|+.||+|... ...+|....
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y------------g~~v~~vs~DG~~-----------~~~fp~~~~ 171 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY------------GFSVIPVSLDGRP-----------IPSFPNPRP 171 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh------------CCEEEEEecCCCC-----------CcCCCCCCC
Confidence 34456789999999999999999999999999988 4889999999643 022332222
Q ss_pred hHHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 184 TIKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 184 ~~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+..+++.|||..+|+++|+++++.....
T Consensus 172 -~~g~~~~l~v~~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 172 -DPGQAKRLGVKVTPALFLVNPNTKKWYP 199 (215)
T ss_pred -CHHHHHHcCCCcCCEEEEEECCCCeEEE
Confidence 5678899999999999999998844443
No 145
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.41 E-value=2e-06 Score=76.77 Aligned_cols=85 Identities=15% Similarity=0.230 Sum_probs=67.2
Q ss_pred ccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCch
Q 021494 104 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 183 (311)
Q Consensus 104 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d 183 (311)
+.++.+++-|++|+.+.|++|.++.|.|+.+.++| ++.|+.||+|... ...+|....
T Consensus 145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y------------gi~v~~VS~DG~~-----------~p~fp~~~~ 201 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY------------GISVIPISVDGTL-----------IPGLPNSRS 201 (256)
T ss_pred HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh------------CCeEEEEecCCCC-----------CCCCCCccC
Confidence 34456789999999999999999999999999988 5889999999753 122333222
Q ss_pred hHHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 184 TIKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 184 ~~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+..+++.+||..+|+++|++++.+....
T Consensus 202 -d~gqa~~l~v~~~Pal~Lv~~~t~~~~p 229 (256)
T TIGR02739 202 -DSGQAQHLGVKYFPALYLVNPKSQKMSP 229 (256)
T ss_pred -ChHHHHhcCCccCceEEEEECCCCcEEE
Confidence 4578899999999999999998554444
No 146
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.40 E-value=3.2e-07 Score=75.10 Aligned_cols=51 Identities=33% Similarity=0.642 Sum_probs=47.2
Q ss_pred CCccccccCCHHHHHHHHhhcccCCCCeeEEecCCCCCCceeechhhHHHhhhcc
Q 021494 1 MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGI 55 (311)
Q Consensus 1 ~~w~a~p~~d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~~~~~~~~v~~~~~ 55 (311)
|+|+++||+|. ..++|.++|.|.+||+++++.+ +|.+++.+++.++..++.
T Consensus 92 ~~W~~iPf~d~-~~~~l~~ky~v~~iP~l~i~~~---dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 92 GDWLAIPFGDD-LIQKLSEKYEVKGIPALVILKP---DGTVVTEDARLLVQLGGS 142 (157)
T ss_pred CCeEEecCCCH-HHHHHHHhcccCcCceeEEecC---CCCEehHhhHHHHHhhcc
Confidence 79999999986 6699999999999999999998 999999999999998854
No 147
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.33 E-value=4.5e-06 Score=64.81 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=54.7
Q ss_pred CeEe-eCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC
Q 021494 91 GYLL-GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 161 (311)
Q Consensus 91 df~l-~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~ 161 (311)
+|.+ +.+|+ .++++.++||++||.-.|+-|+.-. ....|++++++|+++ +++|+++.++.
T Consensus 3 df~~~~~~G~-~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~---------gl~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSAKDIDGK-PVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK---------GLEILAFPCNQ 63 (108)
T ss_dssp GSEEEBTTSS-EEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG---------TEEEEEEEBST
T ss_pred ceeeeCCCCC-EECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC---------CeEEEeeehHH
Confidence 4677 89999 9999999999999999999999888 888999999999976 89999998864
No 148
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.31 E-value=1.6e-06 Score=69.79 Aligned_cols=73 Identities=23% Similarity=0.438 Sum_probs=46.2
Q ss_pred ccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhH
Q 021494 106 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 185 (311)
Q Consensus 106 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~ 185 (311)
.+..+..++.|..+|||.|+...|.|.++.+..+ ++++-.+..|.+.
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-----------~i~~~~i~rd~~~---------------------- 84 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVPVLAKIAEANP-----------NIEVRIILRDENK---------------------- 84 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-----------TEEEEEE-HHHHH----------------------
T ss_pred hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-----------CCeEEEEEecCCh----------------------
Confidence 3445678899999999999999999999998743 4667677665533
Q ss_pred HHHHHh---CCCCccceEEEECCCCcEEEe
Q 021494 186 KELTKY---FDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 186 ~~l~~~---~~v~~~Pt~vlid~~G~iv~~ 212 (311)
++... .|..++|+++++|.+|+.+.+
T Consensus 85 -el~~~~lt~g~~~IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 85 -ELMDQYLTNGGRSIPTFIFLDKDGKELGR 113 (129)
T ss_dssp -HHTTTTTT-SS--SSEEEEE-TT--EEEE
T ss_pred -hHHHHHHhCCCeecCEEEEEcCCCCEeEE
Confidence 23332 467899999999999999987
No 149
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.30 E-value=4.5e-06 Score=74.15 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=64.8
Q ss_pred ccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCch
Q 021494 104 VSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 183 (311)
Q Consensus 104 l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d 183 (311)
+.++.+++-|++|+.+.|++|.++.|.|+.+.++| ++.|+.||+|... ...||....
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y------------g~~v~~VS~DG~~-----------~p~fp~~~~ 194 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY------------GLSVIPVSVDGVI-----------NPLLPDSRT 194 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh------------CCeEEEEecCCCC-----------CCCCCCCcc
Confidence 44456778999999999999999999999999988 5889999999743 123333222
Q ss_pred hHHHHHHhCCCCccceEEEECCCCcEE
Q 021494 184 TIKELTKYFDVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 184 ~~~~l~~~~~v~~~Pt~vlid~~G~iv 210 (311)
+...++.++|..+|+++|++++.+-.
T Consensus 195 -d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 195 -DQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred -ChhHHHhcCCcccceEEEEECCCCcE
Confidence 34566899999999999999976433
No 150
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=98.29 E-value=4.3e-07 Score=53.75 Aligned_cols=29 Identities=34% Similarity=0.969 Sum_probs=27.0
Q ss_pred cccccccCCCcce-eEeCCCCCCCcccccc
Q 021494 272 FICCDCDEQGSGW-AYQCLECGYEVHPKCV 300 (311)
Q Consensus 272 ~~Cd~C~~~g~~w-~~~C~~c~~~~h~~c~ 300 (311)
++|+.|++...+. .|.|.+|+|+||++||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 5799999999877 9999999999999997
No 151
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.24 E-value=4e-06 Score=69.62 Aligned_cols=87 Identities=17% Similarity=0.322 Sum_probs=49.5
Q ss_pred eeeccccCCCEEEEEEecCCChhhHhhhHHH---HHHHHHHHhhhhhcCCCCCCeEEEEEecCCCH-HHHHHHHhcCCCc
Q 021494 101 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ-TSFESYFGTMPWL 176 (311)
Q Consensus 101 ~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~-~~~~~~~~~~~~~ 176 (311)
.+..+.-.+|+|+|.++++||.+|..+.... .++.+.+.+. +|.|.+|.++ .++...+..
T Consensus 29 a~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~------------FI~VkvDree~Pdid~~y~~---- 92 (163)
T PF03190_consen 29 ALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN------------FIPVKVDREERPDIDKIYMN---- 92 (163)
T ss_dssp HHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-------------EEEEEETTT-HHHHHHHHH----
T ss_pred HHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC------------EEEEEeccccCccHHHHHHH----
Confidence 3444445679999999999999999887532 3455555554 7888888765 222222210
Q ss_pred ccccCchhHHHHHHhCCCCccceEEEECCCCcEEEec
Q 021494 177 ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 177 ~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~ 213 (311)
......|..++|++++++++|+.+...
T Consensus 93 ----------~~~~~~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 93 ----------AVQAMSGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp ----------HHHHHHS---SSEEEEE-TTS-EEEEE
T ss_pred ----------HHHHhcCCCCCCceEEECCCCCeeeee
Confidence 112223788999999999999999763
No 152
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.24 E-value=6.5e-06 Score=55.56 Aligned_cols=63 Identities=29% Similarity=0.556 Sum_probs=48.8
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
++.||++||++|....+.+.++ .+. ..++.++.++.+..... ......+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~---------~~~~~~~~~~~~~~~~~--------------------~~~~~~~ 49 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALL---------NKGVKFEAVDVDEDPAL--------------------EKELKRY 49 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--Hhh---------CCCcEEEEEEcCCChHH--------------------hhHHHhC
Confidence 5789999999999999999988 333 34789999998875421 1113678
Q ss_pred CCCccceEEEECCC
Q 021494 193 DVQGIPCLVIIGPE 206 (311)
Q Consensus 193 ~v~~~Pt~vlid~~ 206 (311)
++..+|++++++++
T Consensus 50 ~~~~~P~~~~~~~~ 63 (69)
T cd01659 50 GVGGVPTLVVFGPG 63 (69)
T ss_pred CCccccEEEEEeCC
Confidence 99999999999766
No 153
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.24 E-value=4.8e-06 Score=63.48 Aligned_cols=69 Identities=36% Similarity=0.592 Sum_probs=53.4
Q ss_pred eccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCc
Q 021494 103 PVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 182 (311)
Q Consensus 103 ~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~ 182 (311)
....+.++++++.||++||++|+...|.+.++.+++.. .+.++.++..+ .
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~----------~~~~~~i~~~~-~------------------- 75 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG----------DVEVVAVNVDD-E------------------- 75 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC----------CcEEEEEECCC-C-------------------
Confidence 34444588999999999999999999999999998863 36778887751 0
Q ss_pred hhHHHHHHhCC--CCccceEEEE
Q 021494 183 PTIKELTKYFD--VQGIPCLVII 203 (311)
Q Consensus 183 d~~~~l~~~~~--v~~~Pt~vli 203 (311)
...+...|+ +..+|+++++
T Consensus 76 --~~~~~~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 76 --NPDLAAEFGVAVRSIPTLLLF 96 (127)
T ss_pred --ChHHHHHHhhhhccCCeEEEE
Confidence 346667777 8888988765
No 154
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=1.4e-06 Score=83.99 Aligned_cols=69 Identities=23% Similarity=0.428 Sum_probs=59.5
Q ss_pred CEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHH
Q 021494 110 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 189 (311)
Q Consensus 110 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 189 (311)
|.-+|.|+++||++|+++.|.++++++.+..- .+-+.|.+|++-++. +..++
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W-------~~vv~vaaVdCA~~~---------------------N~~lC 109 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKW-------RPVVRVAAVDCADEE---------------------NVKLC 109 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcc-------cceeEEEEeeccchh---------------------hhhhH
Confidence 57899999999999999999999999998875 456667777665555 77999
Q ss_pred HhCCCCccceEEEECCC
Q 021494 190 KYFDVQGIPCLVIIGPE 206 (311)
Q Consensus 190 ~~~~v~~~Pt~vlid~~ 206 (311)
+.|+|.++|++..+.++
T Consensus 110 Ref~V~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 110 REFSVSGYPTLRYFPPD 126 (606)
T ss_pred hhcCCCCCceeeecCCc
Confidence 99999999999999776
No 155
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.05 E-value=8.2e-06 Score=65.41 Aligned_cols=57 Identities=53% Similarity=1.016 Sum_probs=52.2
Q ss_pred CCccccccCCHHHHHHHHhhcccCCCCeeEEecCCCCCCceeechhhHHHhhhccccCcc
Q 021494 1 MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 60 (311)
Q Consensus 1 ~~w~a~p~~d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~~~~~~~~v~~~~~~~~p~ 60 (311)
+||+.+||.+.+....+.+.|+|.++|+++++++ +|+++..++.+++..++..+|||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~---~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 75 MPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDA---DGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred CCeeEcccCCHHHHHHHHHHcCCCCCCEEEEECC---CCCEEcccHHHHHhhcccccCCC
Confidence 5799999988667778999999999999999998 99999999999999999999997
No 156
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.00 E-value=3.5e-05 Score=67.46 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=91.0
Q ss_pred HHhcCCCCCeEe-eCCCCce-eeccccC--CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEe
Q 021494 83 NLLTNHDRGYLL-GHPPDEK-VPVSSLV--GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 158 (311)
Q Consensus 83 ~~~g~~~pdf~l-~~~g~~~-v~l~~~~--gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs 158 (311)
..+|..|||..+ ..+|+ . .++.++. +++++|+|.+-.||+=+.-+..++++.++|.+. .++-+|.|.
T Consensus 73 a~~G~~APns~vv~l~g~-~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~--------adFl~VYI~ 143 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQ-RSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV--------ADFLIVYIE 143 (237)
T ss_pred eeCCCCCCCCceEeeCCC-cceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh--------hheehhhHh
Confidence 447999999999 99999 6 8999984 599999999988999999999999999999874 234444432
Q ss_pred ----cC------C--------CHH---HHHHHHhcCCCcccccCch-hHHHHHHhCCCCccceEEEECCCCcEEEeccch
Q 021494 159 ----TD------R--------DQT---SFESYFGTMPWLALPFGDP-TIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRN 216 (311)
Q Consensus 159 ----~d------~--------~~~---~~~~~~~~~~~~~~p~~~d-~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~g~~ 216 (311)
.| . +.+ ...+.+.+.. ...|+..| -+....+.||...- .++|| .+|+|++..|
T Consensus 144 EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA~Pe-RlyIi-~~gkv~Y~Gg-- 218 (237)
T PF00837_consen 144 EAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGALPE-RLYII-QDGKVVYKGG-- 218 (237)
T ss_pred hhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCCCcc-eEEEE-ECCEEEEeCC--
Confidence 11 0 001 1222222222 45676555 35577888886533 45666 6999999865
Q ss_pred hhhcccccCCCCcHHHHHHHHH
Q 021494 217 LINLYQENAYPFTEAKLEFLEK 238 (311)
Q Consensus 217 ~~~~~g~~~~p~~~~~i~~L~~ 238 (311)
...|.+..+.+++.++
T Consensus 219 ------~GP~~y~~~e~r~~L~ 234 (237)
T PF00837_consen 219 ------PGPFGYSPEELREWLE 234 (237)
T ss_pred ------CCCCcCCHHHHHHHHH
Confidence 2345555555544433
No 157
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.93 E-value=1.8e-05 Score=77.22 Aligned_cols=76 Identities=26% Similarity=0.497 Sum_probs=54.0
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHH-HHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLL-SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 186 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~-~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 186 (311)
++|+|+|+|+|.||..|+.+.+..- +.....+ -.++..+-++...+. +.+.
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~---------~~~~vlLqaDvT~~~-------------------p~~~ 524 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA---------LQDVVLLQADVTAND-------------------PAIT 524 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh---------cCCeEEEEeeecCCC-------------------HHHH
Confidence 4569999999999999999988653 3222222 235555555443321 2266
Q ss_pred HHHHhCCCCccceEEEECCCCcEEE
Q 021494 187 ELTKYFDVQGIPCLVIIGPEGKTVT 211 (311)
Q Consensus 187 ~l~~~~~v~~~Pt~vlid~~G~iv~ 211 (311)
++.++|++-+.|++++++++|+-..
T Consensus 525 ~lLk~~~~~G~P~~~ff~~~g~e~~ 549 (569)
T COG4232 525 ALLKRLGVFGVPTYLFFGPQGSEPE 549 (569)
T ss_pred HHHHHcCCCCCCEEEEECCCCCcCc
Confidence 8899999999999999998887543
No 158
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.90 E-value=0.00015 Score=57.12 Aligned_cols=75 Identities=11% Similarity=0.074 Sum_probs=52.8
Q ss_pred ccCCCEEEEEEecC----CChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 021494 106 SLVGKTVGLYFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 181 (311)
Q Consensus 106 ~~~gk~vll~F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~ 181 (311)
.-.+|.++|||+++ ||..|+..+.. .++.+-+.+ ++.+++.+++..+
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~----------~fv~w~~dv~~~e------------------ 64 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT----------RMLFWACSVAKPE------------------ 64 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc----------CEEEEEEecCChH------------------
Confidence 34679999999999 88899766432 233333332 4555555555444
Q ss_pred chhHHHHHHhCCCCccceEEEE---CCCCcEEEe
Q 021494 182 DPTIKELTKYFDVQGIPCLVII---GPEGKTVTK 212 (311)
Q Consensus 182 ~d~~~~l~~~~~v~~~Pt~vli---d~~G~iv~~ 212 (311)
..+++..+++.++|+++++ +.+.+++.+
T Consensus 65 ---g~~la~~l~~~~~P~~~~l~~~~~~~~vv~~ 95 (116)
T cd02991 65 ---GYRVSQALRERTYPFLAMIMLKDNRMTIVGR 95 (116)
T ss_pred ---HHHHHHHhCCCCCCEEEEEEecCCceEEEEE
Confidence 4689999999999999999 556666776
No 159
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00012 Score=59.73 Aligned_cols=86 Identities=26% Similarity=0.469 Sum_probs=59.2
Q ss_pred ccCCCEEEEEEecCCChhhHhhhHHHH---HHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCc
Q 021494 106 SLVGKTVGLYFSARWCIPCEKFMPKLL---SIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGD 182 (311)
Q Consensus 106 ~~~gk~vll~F~a~wC~~C~~~~p~l~---~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~ 182 (311)
.-.+|+.++.|-...|++|.++-..+. ++.+-+.. .+.++.+.+..... ..+-...
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~----------hf~~~~l~i~~skp-----------v~f~~g~ 97 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE----------HFSAYYLNISYSKP-----------VLFKVGD 97 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh----------CeEEEEEEeccCcc-----------eEeecCc
Confidence 346799999999999999999877652 33333443 35555555433220 0111110
Q ss_pred ----hhHHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 183 ----PTIKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 183 ----d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
-...+|++.|+|+++|+++++|..|+.+..
T Consensus 98 kee~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 98 KEEKMSTEELAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred eeeeecHHHHHHHhccccCceEEEEcCCCCEEEe
Confidence 125699999999999999999999998876
No 160
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.85 E-value=8.8e-05 Score=59.59 Aligned_cols=69 Identities=9% Similarity=0.147 Sum_probs=53.9
Q ss_pred EEEEEEec--CCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 111 TVGLYFSA--RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 111 ~vll~F~a--~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
..+|+|.. ..++.+....-.|.++.++|.+. .+.++.|++|.+ ..+
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~---------~v~~akVDiD~~-----------------------~~L 83 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDY---------TWQVAIADLEQS-----------------------EAI 83 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCC---------ceEEEEEECCCC-----------------------HHH
Confidence 34555543 35667777777888999998632 477888877764 489
Q ss_pred HHhCCCCccceEEEECCCCcEEEe
Q 021494 189 TKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+.+|||.++||++|+ ++|+++.+
T Consensus 84 A~~fgV~siPTLl~F-kdGk~v~~ 106 (132)
T PRK11509 84 GDRFGVFRFPATLVF-TGGNYRGV 106 (132)
T ss_pred HHHcCCccCCEEEEE-ECCEEEEE
Confidence 999999999999999 99999988
No 161
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.81 E-value=2.1e-05 Score=64.61 Aligned_cols=53 Identities=32% Similarity=0.702 Sum_probs=46.9
Q ss_pred CccccccCCHHHHHHHHhhcccCCCCeeEEecCCCCCCceeechhhHHHhhhccccC
Q 021494 2 PWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAF 58 (311)
Q Consensus 2 ~w~a~p~~d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~~~~~~~~v~~~~~~~~ 58 (311)
+|+++||.+. ....+.++|++.++|+++++++ +|+++..+++..|++++..+|
T Consensus 90 ~~~~~p~~~~-~~~~l~~~y~v~~iPt~vlId~---~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 90 KWLFLPFEDE-FRRELEAQFSVEELPTVVVLKP---DGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred Cceeecccch-HHHHHHHHcCCCCCCEEEEECC---CCcEEeeChHHHHHHHHHHHH
Confidence 4999999874 4578999999999999999998 999999999999999976554
No 162
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.79 E-value=0.00011 Score=52.04 Aligned_cols=55 Identities=25% Similarity=0.555 Sum_probs=41.0
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
+..|+++||++|+...+.|.+ . ++.+..++++.+... ..++.+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~---------~i~~~~vdi~~~~~~-------------------~~~~~~~~ 46 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K---------GIAFEEIDVEKDSAA-------------------REEVLKVL 46 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C---------CCeEEEEeccCCHHH-------------------HHHHHHHh
Confidence 457999999999998776643 2 467788887765421 23567788
Q ss_pred CCCccceEEE
Q 021494 193 DVQGIPCLVI 202 (311)
Q Consensus 193 ~v~~~Pt~vl 202 (311)
++.++|++++
T Consensus 47 ~~~~vP~~~~ 56 (74)
T TIGR02196 47 GQRGVPVIVI 56 (74)
T ss_pred CCCcccEEEE
Confidence 9999999886
No 163
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.73 E-value=0.00018 Score=51.69 Aligned_cols=63 Identities=16% Similarity=0.353 Sum_probs=40.1
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHH-h
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK-Y 191 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~-~ 191 (311)
+..||++||++|++..+.|.++ ++.+-.|+++.+... ...+.+ .
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~----------------~~~~~~idi~~~~~~-------------------~~~~~~~~ 46 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL----------------GAAYEWVDIEEDEGA-------------------ADRVVSVN 46 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc----------------CCceEEEeCcCCHhH-------------------HHHHHHHh
Confidence 5679999999999988876432 234556666654411 112222 2
Q ss_pred CCCCccceEEEECCCCcEEEe
Q 021494 192 FDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 192 ~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+++.++|++ ++ .+|+++..
T Consensus 47 ~~~~~vP~i-~~-~~g~~l~~ 65 (77)
T TIGR02200 47 NGNMTVPTV-KF-ADGSFLTN 65 (77)
T ss_pred CCCceeCEE-EE-CCCeEecC
Confidence 588999986 45 46666654
No 164
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.70 E-value=0.00017 Score=56.89 Aligned_cols=77 Identities=21% Similarity=0.441 Sum_probs=48.1
Q ss_pred CCCEEEEEEec-------CCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCccccc
Q 021494 108 VGKTVGLYFSA-------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 180 (311)
Q Consensus 108 ~gk~vll~F~a-------~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~ 180 (311)
.|++++|+|++ +|||.|....|.+.+......+ +..+|.|.+.+. ..|+.-
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~----------~~~lv~v~VG~r-~~Wkdp----------- 75 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE----------NARLVYVEVGDR-PEWKDP----------- 75 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST----------TEEEEEEE---H-HHHC-T-----------
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC----------CceEEEEEcCCH-HHhCCC-----------
Confidence 45677888874 4999999999999988877443 577787776532 333321
Q ss_pred CchhHHHHHH--hCCCCccceEEEECCCCcEE
Q 021494 181 GDPTIKELTK--YFDVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 181 ~~d~~~~l~~--~~~v~~~Pt~vlid~~G~iv 210 (311)
+..... .+++.++||++-++..++++
T Consensus 76 ----~n~fR~~p~~~l~~IPTLi~~~~~~rL~ 103 (119)
T PF06110_consen 76 ----NNPFRTDPDLKLKGIPTLIRWETGERLV 103 (119)
T ss_dssp ----TSHHHH--CC---SSSEEEECTSS-EEE
T ss_pred ----CCCceEcceeeeeecceEEEECCCCccc
Confidence 223444 69999999999997765544
No 165
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.66 E-value=8.5e-05 Score=59.70 Aligned_cols=56 Identities=43% Similarity=0.849 Sum_probs=48.2
Q ss_pred CccccccCCHHHHHHHHhhcccCCCCeeEEecCCCCCCceeechhhHHH-hhhccccCcc
Q 021494 2 PWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELI-YKYGIRAFPF 60 (311)
Q Consensus 2 ~w~a~p~~d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~~~~~~~~v-~~~~~~~~p~ 60 (311)
+|..+||.|......+.+.|+|.++|++++++. +|+++..++.+.+ .+++..+|||
T Consensus 76 ~~~~~~~~d~~~~~~~~~~~~v~~iPt~~lid~---~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 76 PWLAVPFEDEELRELLEKQFKVEGIPTLVVLKP---DGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred CeEeeccCcHHHHHHHHHHcCCCCCCEEEEECC---CCCEEchhHHHHHHhCcccccCCC
Confidence 688999988666678999999999999999997 8999998886644 5599999997
No 166
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.63 E-value=0.00012 Score=53.48 Aligned_cols=60 Identities=22% Similarity=0.345 Sum_probs=41.9
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
++.|+++|||+|....+.|.++. +. ..++++-|+.+.+..++ ...+.+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~----------~~~~~~~v~~~~~~~~~------------------~~~l~~~~ 50 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK----------PAYEVVELDQLSNGSEI------------------QDYLEEIT 50 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC----------CCCEEEEeeCCCChHHH------------------HHHHHHHh
Confidence 46799999999999999887765 21 13667777666443222 22466778
Q ss_pred CCCccceEEE
Q 021494 193 DVQGIPCLVI 202 (311)
Q Consensus 193 ~v~~~Pt~vl 202 (311)
++..+|++++
T Consensus 51 g~~~vP~v~i 60 (84)
T TIGR02180 51 GQRTVPNIFI 60 (84)
T ss_pred CCCCCCeEEE
Confidence 9999999753
No 167
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00011 Score=62.95 Aligned_cols=92 Identities=21% Similarity=0.402 Sum_probs=68.4
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
+.++.+|.|+|.|.+.|+...|.+.++..+|... ++.+-.|.+.. -..
T Consensus 143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~---------~lkFGkvDiGr-----------------------fpd 190 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN---------LLKFGKVDIGR-----------------------FPD 190 (265)
T ss_pred CceEEEEEEEeecChhhcccccccHHHHHHhCCC---------CCcccceeecc-----------------------CcC
Confidence 3468999999999999999999999999999854 66666665543 224
Q ss_pred HHHhCCCC------ccceEEEECCCCcEEEeccchhhhccc-ccCCCCcHHHHH
Q 021494 188 LTKYFDVQ------GIPCLVIIGPEGKTVTKQGRNLINLYQ-ENAYPFTEAKLE 234 (311)
Q Consensus 188 l~~~~~v~------~~Pt~vlid~~G~iv~~~g~~~~~~~g-~~~~p~~~~~i~ 234 (311)
.+.+|+|+ .+||++++ ++|+-+.| +-.+...| +..|+++++.+-
T Consensus 191 ~a~kfris~s~~srQLPT~ilF-q~gkE~~R--rP~vd~~gra~s~~fSeenv~ 241 (265)
T KOG0914|consen 191 VAAKFRISLSPGSRQLPTYILF-QKGKEVSR--RPDVDVKGRAVSFPFSEENVC 241 (265)
T ss_pred hHHheeeccCcccccCCeEEEE-ccchhhhc--CccccccCCcccccccHHHHH
Confidence 56777774 67999999 88887766 33343444 456888887654
No 168
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.41 E-value=0.002 Score=57.83 Aligned_cols=94 Identities=12% Similarity=0.181 Sum_probs=57.7
Q ss_pred cCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEec---CC-------------CH-HHHHHH
Q 021494 107 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVST---DR-------------DQ-TSFESY 169 (311)
Q Consensus 107 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~---d~-------------~~-~~~~~~ 169 (311)
-.+|.+++.|.-+.||+|+++.+.+.++.+. .+++|..+-+ .. ++ +.|..+
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~------------g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~ 182 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS------------GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEY 182 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc------------CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHH
Confidence 3567899999999999999999988765542 1344444322 11 11 222222
Q ss_pred HhcCCC--ccccc--------CchhHHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 170 FGTMPW--LALPF--------GDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 170 ~~~~~~--~~~p~--------~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
...+.. +..+- ..+.+.++.+.+||+++|++|+.|.+|++...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v 235 (251)
T PRK11657 183 EASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV 235 (251)
T ss_pred HHhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence 221111 00100 11234578899999999999999999986544
No 169
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00011 Score=63.40 Aligned_cols=70 Identities=20% Similarity=0.388 Sum_probs=55.1
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
+++.++++|||.||.+|.++...+..+.+..+ + +.+++++.+. ..+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-----------~--~~~~k~~a~~---------------------~~e 61 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-----------N--AQFLKLEAEE---------------------FPE 61 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-----------h--heeeeehhhh---------------------hhH
Confidence 67889999999999999999988888877773 2 3445555444 568
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
++..+.+.+.|+++++ ..|+.+.+
T Consensus 62 is~~~~v~~vp~~~~~-~~~~~v~~ 85 (227)
T KOG0911|consen 62 ISNLIAVEAVPYFVFF-FLGEKVDR 85 (227)
T ss_pred HHHHHHHhcCceeeee-ecchhhhh
Confidence 9999999999999888 66666554
No 170
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.28 E-value=0.002 Score=44.18 Aligned_cols=59 Identities=24% Similarity=0.334 Sum_probs=42.2
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
++.|+.+||++|.+....|. ++ ++.+-.++++.+.+. ...+.+..
T Consensus 1 V~vy~~~~C~~C~~~~~~L~-------~~---------~i~y~~~dv~~~~~~-------------------~~~l~~~~ 45 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD-------EK---------GIPYEEVDVDEDEEA-------------------REELKELS 45 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH-------HT---------TBEEEEEEGGGSHHH-------------------HHHHHHHH
T ss_pred cEEEEcCCCcCHHHHHHHHH-------Hc---------CCeeeEcccccchhH-------------------HHHHHHHc
Confidence 46788999999998877662 22 577888888776421 34566666
Q ss_pred CCCccceEEEECCCCcE
Q 021494 193 DVQGIPCLVIIGPEGKT 209 (311)
Q Consensus 193 ~v~~~Pt~vlid~~G~i 209 (311)
|...+|++++ +|+.
T Consensus 46 g~~~~P~v~i---~g~~ 59 (60)
T PF00462_consen 46 GVRTVPQVFI---DGKF 59 (60)
T ss_dssp SSSSSSEEEE---TTEE
T ss_pred CCCccCEEEE---CCEE
Confidence 9999999886 4554
No 171
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.28 E-value=0.00093 Score=66.80 Aligned_cols=70 Identities=11% Similarity=0.192 Sum_probs=50.3
Q ss_pred ccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhH
Q 021494 106 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 185 (311)
Q Consensus 106 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~ 185 (311)
.+.+++.+-.|.+++|++|......++++.... +++..-.|.... .
T Consensus 473 ~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-----------~~i~~~~i~~~~-----------------------~ 518 (555)
T TIGR03143 473 KITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-----------PNVEAEMIDVSH-----------------------F 518 (555)
T ss_pred hcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-----------CCceEEEEECcc-----------------------c
Confidence 344555677788999999998888777766653 346655555443 4
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 186 KELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 186 ~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
.+++++|+|.++|+++| +|+++..
T Consensus 519 ~~~~~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 519 PDLKDEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred HHHHHhCCceecCEEEE---CCEEEEe
Confidence 58999999999999886 4555544
No 172
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.27 E-value=0.0021 Score=56.92 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=54.8
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC-----C--------------HHHHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR-----D--------------QTSFES 168 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~-----~--------------~~~~~~ 168 (311)
.||.+++.|.-+.||+|+++.+.+.++.+ . ++.|..+.+.. . .+.|.+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~---------~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~ 172 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----L---------GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDD 172 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----C---------CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHH
Confidence 46789999999999999999988776532 2 46665553321 1 122333
Q ss_pred HHhcCCCc--ccccCchhHHHHHHhCCCCccceEEEECCCCcEE
Q 021494 169 YFGTMPWL--ALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 169 ~~~~~~~~--~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv 210 (311)
.+....-. ......+.+.++++.+||+++|++++ ++|+++
T Consensus 173 ~~~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 173 AMKGKDVSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred HHcCCCCCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 33221100 01112335668999999999999884 467765
No 173
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.23 E-value=0.0025 Score=54.85 Aligned_cols=95 Identities=18% Similarity=0.185 Sum_probs=57.1
Q ss_pred eeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC--C--------------HHH
Q 021494 102 VPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR--D--------------QTS 165 (311)
Q Consensus 102 v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~--~--------------~~~ 165 (311)
+.+..-.++..++.|+.+.||+|+++.+.+.+ ... +-.+.++.+.+.. . .+.
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~--------~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a 137 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----NAD--------GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKA 137 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh----ccC--------ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHH
Confidence 34433447899999999999999999998876 111 1134445444432 1 123
Q ss_pred HHHHHhcCCC-ccc---ccCchhHHHHHHhCCCCccceEEEECCCCcEE
Q 021494 166 FESYFGTMPW-LAL---PFGDPTIKELTKYFDVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 166 ~~~~~~~~~~-~~~---p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv 210 (311)
|.+......- ... ....+.+..+.+.+||+++|+++ + .+|+++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 138 WTDAMSGGKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred HHHHHhCCCCCCCccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 3333332211 011 12233566899999999999997 5 457664
No 174
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.22 E-value=0.0016 Score=48.05 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=45.4
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
+..|+.+||++|.+....|+++..++. ++.+..++++.+..+ ..++.+.+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~-----------~i~~~~idi~~~~~~-------------------~~el~~~~ 52 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD-----------DFDYRYVDIHAEGIS-------------------KADLEKTV 52 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc-----------CCcEEEEECCCChHH-------------------HHHHHHHH
Confidence 567899999999999999998887642 567778877765321 22344444
Q ss_pred --CCCccceEEEECCCCcEE
Q 021494 193 --DVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 193 --~v~~~Pt~vlid~~G~iv 210 (311)
++..+|+++ + +|+.+
T Consensus 53 ~~~~~~vP~if-i--~g~~i 69 (85)
T PRK11200 53 GKPVETVPQIF-V--DQKHI 69 (85)
T ss_pred CCCCCcCCEEE-E--CCEEE
Confidence 457899976 4 46654
No 175
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=97.13 E-value=0.00027 Score=45.39 Aligned_cols=30 Identities=33% Similarity=0.837 Sum_probs=27.6
Q ss_pred ccccccCCCcceeEeCCCC-CCCcccccccc
Q 021494 273 ICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA 302 (311)
Q Consensus 273 ~Cd~C~~~g~~w~~~C~~c-~~~~h~~c~~~ 302 (311)
.|++|++.+.|-.|+|..| +|||+..|...
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 6999999888999999999 89999999765
No 176
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.00 E-value=0.0073 Score=43.62 Aligned_cols=57 Identities=25% Similarity=0.468 Sum_probs=39.4
Q ss_pred ecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhCCCCc
Q 021494 117 SARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG 196 (311)
Q Consensus 117 ~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~ 196 (311)
++++|+.|......++++.+.+. +.+-.+.. .+ ..++ ..|||.+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~------------i~~ei~~~-~~----------------------~~~~-~~ygv~~ 49 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG------------IEVEIIDI-ED----------------------FEEI-EKYGVMS 49 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT------------EEEEEEET-TT----------------------HHHH-HHTT-SS
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC------------CeEEEEEc-cC----------------------HHHH-HHcCCCC
Confidence 56779999988888877777653 44444443 21 3456 9999999
Q ss_pred cceEEEECCCCcEEEe
Q 021494 197 IPCLVIIGPEGKTVTK 212 (311)
Q Consensus 197 ~Pt~vlid~~G~iv~~ 212 (311)
+|++ +| ||+++..
T Consensus 50 vPal-vI--ng~~~~~ 62 (76)
T PF13192_consen 50 VPAL-VI--NGKVVFV 62 (76)
T ss_dssp SSEE-EE--TTEEEEE
T ss_pred CCEE-EE--CCEEEEE
Confidence 9999 55 4788766
No 177
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.75 E-value=0.0036 Score=48.79 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=47.8
Q ss_pred CCEEEEEEec--------CCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCccccc
Q 021494 109 GKTVGLYFSA--------RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPF 180 (311)
Q Consensus 109 gk~vll~F~a--------~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~ 180 (311)
|+.+.++|.+ +|||.|.+..|.+.+..+... .++.||-|.+...+ +
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap----------~~~~~v~v~VG~rp----------------~ 78 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP----------EDVHFVHVYVGNRP----------------Y 78 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC----------CceEEEEEEecCCC----------------c
Confidence 3446666664 599999999999988877544 36788888765422 1
Q ss_pred CchhHHHHHHhCCC-CccceEEEECC
Q 021494 181 GDPTIKELTKYFDV-QGIPCLVIIGP 205 (311)
Q Consensus 181 ~~d~~~~l~~~~~v-~~~Pt~vlid~ 205 (311)
-.+....+....++ .++||++=.+.
T Consensus 79 Wk~p~n~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 79 WKDPANPFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred ccCCCCccccCCCceeecceeeEEcC
Confidence 11113345566666 89999998864
No 178
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.75 E-value=0.011 Score=41.25 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=36.4
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
++.|+++||++|......|.+ . ++.+..+++|.+... ...+.+..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~---------~i~~~~~~i~~~~~~-------------------~~~~~~~~ 46 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------R---------GIPFEEVDVDEDPEA-------------------LEELKKLN 46 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------C---------CCCeEEEeCCCCHHH-------------------HHHHHHHc
Confidence 467889999999987765543 2 355666777654311 22344455
Q ss_pred CCCccceEEE
Q 021494 193 DVQGIPCLVI 202 (311)
Q Consensus 193 ~v~~~Pt~vl 202 (311)
++..+|++++
T Consensus 47 ~~~~vP~i~~ 56 (73)
T cd02976 47 GYRSVPVVVI 56 (73)
T ss_pred CCcccCEEEE
Confidence 7889999875
No 179
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=96.70 E-value=0.03 Score=48.34 Aligned_cols=111 Identities=18% Similarity=0.363 Sum_probs=77.8
Q ss_pred CCeEeeCCCCceeecccc-CCC--EEEEEEe-----cCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC
Q 021494 90 RGYLLGHPPDEKVPVSSL-VGK--TVGLYFS-----ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR 161 (311)
Q Consensus 90 pdf~l~~~g~~~v~l~~~-~gk--~vll~F~-----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~ 161 (311)
.++.++.... +++|+++ .|+ .++..|. ...|+.|...+..+......+..+ ++.++.||-.
T Consensus 47 ~~Y~F~g~~G-~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r---------d~tfa~vSra- 115 (211)
T PF05988_consen 47 KDYVFDGPDG-PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR---------DTTFAVVSRA- 115 (211)
T ss_pred CCeEEeCCCC-cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC---------CceEEEEeCC-
Confidence 4577755555 6999985 554 4555554 468999999999997777778765 7888888754
Q ss_pred CHHHHHHHHhcCCCcccccCchhHHHHHHhCCC-----CccceEEEECCC-CcEEEe
Q 021494 162 DQTSFESYFGTMPWLALPFGDPTIKELTKYFDV-----QGIPCLVIIGPE-GKTVTK 212 (311)
Q Consensus 162 ~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v-----~~~Pt~vlid~~-G~iv~~ 212 (311)
..+.+..|.+.++|. +|..+.........|++ ...|.+-++=++ |+|...
T Consensus 116 P~~~i~afk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhT 171 (211)
T PF05988_consen 116 PLEKIEAFKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHT 171 (211)
T ss_pred CHHHHHHHHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEE
Confidence 467888888899988 88766555567777887 455654444333 555544
No 180
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=96.67 E-value=0.001 Score=42.12 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=28.7
Q ss_pred ccccccCCC-cceeEeCCCC-CCCccccccccccC
Q 021494 273 ICCDCDEQG-SGWAYQCLEC-GYEVHPKCVRAVDR 305 (311)
Q Consensus 273 ~Cd~C~~~g-~~w~~~C~~c-~~~~h~~c~~~~~~ 305 (311)
.||+|+... -|-.|.|..| +|||+..|-..+.|
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~~n 36 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRMGN 36 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhhhcC
Confidence 599999866 4999999999 89999999887655
No 181
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.67 E-value=0.0099 Score=53.69 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=53.1
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
+.+|||.||-+.++.|..+...|..|+.+|. .+.|+-|..... .+
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp-----------~vKFvkI~a~~~------------------------~~ 190 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYP-----------EVKFVKIRASKC------------------------PA 190 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-T-----------TSEEEEEEECGC------------------------CT
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCC-----------ceEEEEEehhcc------------------------Cc
Confidence 4589999999999999999999999999987 477887765421 14
Q ss_pred HHhCCCCccceEEEECCCCcEEEec
Q 021494 189 TKYFDVQGIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~~G~iv~~~ 213 (311)
...|.+.++|+++++ ++|.++...
T Consensus 191 ~~~f~~~~LPtllvY-k~G~l~~~~ 214 (265)
T PF02114_consen 191 SENFPDKNLPTLLVY-KNGDLIGNF 214 (265)
T ss_dssp TTTS-TTC-SEEEEE-ETTEEEEEE
T ss_pred ccCCcccCCCEEEEE-ECCEEEEeE
Confidence 667899999999999 799998763
No 182
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=96.63 E-value=0.0012 Score=42.68 Aligned_cols=30 Identities=37% Similarity=1.005 Sum_probs=26.5
Q ss_pred ccccccCCCc-ceeEeCCCC-CCCcccccccc
Q 021494 273 ICCDCDEQGS-GWAYQCLEC-GYEVHPKCVRA 302 (311)
Q Consensus 273 ~Cd~C~~~g~-~w~~~C~~c-~~~~h~~c~~~ 302 (311)
.|++|++... |-.|.|..| +|||+..|...
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 6999997654 999999999 89999999875
No 183
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.62 E-value=0.0074 Score=44.54 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=48.6
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecC--CC----HHHHHHHH---hcCCCcccccCch
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD--RD----QTSFESYF---GTMPWLALPFGDP 183 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d--~~----~~~~~~~~---~~~~~~~~p~~~d 183 (311)
+..|+...||+|....+.+.++..... .++.+..+.+. .. ........ .... ....+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 69 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADD----------GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQG-KFEALHEA 69 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcC----------CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcC-cHHHHHHH
Confidence 467889999999999999998874433 35666666543 22 11111100 0000 00000000
Q ss_pred -hHHHHHHhCCCCccceEEEEC
Q 021494 184 -TIKELTKYFDVQGIPCLVIIG 204 (311)
Q Consensus 184 -~~~~l~~~~~v~~~Pt~vlid 204 (311)
....+.+.+|+.++|++++-|
T Consensus 70 l~~~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 70 LADTALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHHHHcCCCCCCEEEECC
Confidence 356788999999999999876
No 184
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.60 E-value=0.001 Score=43.52 Aligned_cols=30 Identities=30% Similarity=0.783 Sum_probs=27.2
Q ss_pred ccccccCCCcceeEeCCCC-CCCcccccccc
Q 021494 273 ICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA 302 (311)
Q Consensus 273 ~Cd~C~~~g~~w~~~C~~c-~~~~h~~c~~~ 302 (311)
.||+|++...+..|.|..| +|||...|-..
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~ 32 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLG 32 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhC
Confidence 5999999888899999999 89999999765
No 185
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.57 E-value=0.021 Score=47.75 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=29.7
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHh
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQ 140 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~ 140 (311)
.+++.++.|+...||+|..+.+.+.++.+++..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 578999999999999999999999998888754
No 186
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.56 E-value=0.0056 Score=44.40 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=41.2
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
++.|.++|||+|......|.++.. .++++-|+.+.+..+. ...+.+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~--------------~~~~~~v~~~~~~~~~------------------~~~~~~~~ 49 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV--------------KPAVVELDQHEDGSEI------------------QDYLQELT 49 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC--------------CcEEEEEeCCCChHHH------------------HHHHHHHh
Confidence 467889999999998887766433 3456666665542111 23566778
Q ss_pred CCCccceEEEECCCCcEE
Q 021494 193 DVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 193 ~v~~~Pt~vlid~~G~iv 210 (311)
|+.++|.++ +| |+.+
T Consensus 50 g~~~~P~v~-~~--g~~i 64 (82)
T cd03419 50 GQRTVPNVF-IG--GKFI 64 (82)
T ss_pred CCCCCCeEE-EC--CEEE
Confidence 899999964 43 4543
No 187
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.38 E-value=0.024 Score=49.63 Aligned_cols=114 Identities=10% Similarity=0.154 Sum_probs=78.4
Q ss_pred CCCCeEeeCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHH
Q 021494 88 HDRGYLLGHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 167 (311)
Q Consensus 88 ~~pdf~l~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~ 167 (311)
++|.+.+ |. .-...+..|+++||-+-..+|..|...+..|..|..++.+. +..++.++.|+--.....++
T Consensus 9 ~~p~W~i---~~-~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~------g~~~I~f~vVN~~~~~s~~~ 78 (238)
T PF04592_consen 9 PPPPWKI---GG-QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENE------GLSNISFMVVNHQGEHSRLK 78 (238)
T ss_pred CCCCceE---CC-chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHC------CCCceEEEEEcCCCcchhHH
Confidence 4566665 22 34567789999999999999999999999999999999875 25688888887544333332
Q ss_pred H-HHhcCCCcccccCc-h-hHHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 168 S-YFGTMPWLALPFGD-P-TIKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 168 ~-~~~~~~~~~~p~~~-d-~~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
. .++..--..+|+.. + ....++..++-.. =-++|+|+=|++++.
T Consensus 79 ~~~l~~r~~~~ipVyqq~~~q~dvW~~L~G~k-dD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 79 YWELKRRVSEHIPVYQQDENQPDVWELLNGSK-DDFLIYDRCGRLTYH 125 (238)
T ss_pred HHHHHHhCCCCCceecCCccccCHHHHhCCCc-CcEEEEeccCcEEEE
Confidence 1 22222113466542 2 3456777776543 367999999999987
No 188
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.36 E-value=0.031 Score=38.74 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=40.7
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
++.|.++||++|+.....|.+. ++.+..++++.+.+. ...+.+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~----------------~i~~~~~di~~~~~~-------------------~~~l~~~~ 46 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL----------------GIEFEEIDILEDGEL-------------------REELKELS 46 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----------------CCcEEEEECCCCHHH-------------------HHHHHHHh
Confidence 4568899999999888776542 345666777665421 33566667
Q ss_pred CCCccceEEEECCCCcEEE
Q 021494 193 DVQGIPCLVIIGPEGKTVT 211 (311)
Q Consensus 193 ~v~~~Pt~vlid~~G~iv~ 211 (311)
+...+|++++ +|+.+.
T Consensus 47 ~~~~~P~~~~---~~~~ig 62 (72)
T cd02066 47 GWPTVPQIFI---NGEFIG 62 (72)
T ss_pred CCCCcCEEEE---CCEEEe
Confidence 7788997754 455554
No 189
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.19 E-value=0.085 Score=44.13 Aligned_cols=67 Identities=30% Similarity=0.469 Sum_probs=46.4
Q ss_pred CCE-EEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 109 GKT-VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 109 gk~-vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
++. +++.|..............|++++++++++ +.++.+..+. ...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~----------~~f~~~d~~~-----------------------~~~ 140 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK----------INFVYVDADD-----------------------FPR 140 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT----------SEEEEEETTT-----------------------THH
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe----------EEEEEeehHH-----------------------hHH
Confidence 444 777776555556666777777777777643 6666666553 346
Q ss_pred HHHhCCCC--ccceEEEECCCCc
Q 021494 188 LTKYFDVQ--GIPCLVIIGPEGK 208 (311)
Q Consensus 188 l~~~~~v~--~~Pt~vlid~~G~ 208 (311)
+.+.||+. .+|++++++....
T Consensus 141 ~~~~~~i~~~~~P~~vi~~~~~~ 163 (184)
T PF13848_consen 141 LLKYFGIDEDDLPALVIFDSNKG 163 (184)
T ss_dssp HHHHTTTTTSSSSEEEEEETTTS
T ss_pred HHHHcCCCCccCCEEEEEECCCC
Confidence 78899998 8999999995443
No 190
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=96.19 E-value=0.098 Score=43.13 Aligned_cols=119 Identities=14% Similarity=0.185 Sum_probs=72.6
Q ss_pred eeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHH-HHhhhhhcCCCCCCeEEEEE-ecCCCH--------HHHHHHH
Q 021494 101 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQK-IKQNLVEKGDALEDFEVVFV-STDRDQ--------TSFESYF 170 (311)
Q Consensus 101 ~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-~~~~~~~~~~~~~~~~vv~V-s~d~~~--------~~~~~~~ 170 (311)
..+.+++.||+-+|...|-....=....|.+..+.+. +.. +.++...| +.|+.. ...++.-
T Consensus 29 ~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~---------d~yqtttIiN~dDAi~gt~~fVrss~e~~k 99 (160)
T PF09695_consen 29 PWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPH---------DKYQTTTIINLDDAIWGTGGFVRSSAEDSK 99 (160)
T ss_pred ccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCc---------cceeEEEEEecccccccchHHHHHHHHHhh
Confidence 4555678999999988876654444455555555444 332 34665554 555421 2333344
Q ss_pred hcCCCcccccCchhHHHHHHhCCCCcc-ceEEEECCCCcEEEeccchhhhcccccCCCCcHHHHHHHHHHHH
Q 021494 171 GTMPWLALPFGDPTIKELTKYFDVQGI-PCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQME 241 (311)
Q Consensus 171 ~~~~~~~~p~~~d~~~~l~~~~~v~~~-Pt~vlid~~G~iv~~~g~~~~~~~g~~~~p~~~~~i~~L~~~~~ 241 (311)
+++||-.+-. |.++.+.+.++...- -.++++|++|+|++. ..| ..+++.+++..+.++
T Consensus 100 k~~p~s~~vl--D~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~-------k~G----~Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 100 KEFPWSQFVL--DSNGVVRKAWQLQEESSAIIVLDKQGKVQFV-------KEG----ALSPAEVQQVIALLK 158 (160)
T ss_pred hhCCCcEEEE--cCCCceeccccCCCCCceEEEEcCCccEEEE-------ECC----CCCHHHHHHHHHHHh
Confidence 4566665544 335567777877533 568889999999987 334 456666666665554
No 191
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=96.12 E-value=0.0035 Score=40.79 Aligned_cols=32 Identities=25% Similarity=0.700 Sum_probs=28.5
Q ss_pred cccccccCCCcceeEeCCCC-CCCccccccccc
Q 021494 272 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAV 303 (311)
Q Consensus 272 ~~Cd~C~~~g~~w~~~C~~c-~~~~h~~c~~~~ 303 (311)
+.|+.|++...+-.|.|..| +|||+..|....
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence 46999999777889999999 599999999875
No 192
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=96.07 E-value=0.004 Score=41.08 Aligned_cols=30 Identities=33% Similarity=0.907 Sum_probs=26.4
Q ss_pred ccccccCC-CcceeEeCCCC-CCCcccccccc
Q 021494 273 ICCDCDEQ-GSGWAYQCLEC-GYEVHPKCVRA 302 (311)
Q Consensus 273 ~Cd~C~~~-g~~w~~~C~~c-~~~~h~~c~~~ 302 (311)
.|+.|++. ..+..|.|..| +|||...|-..
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~ 33 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFS 33 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhC
Confidence 59999985 56899999999 89999999765
No 193
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.06 E-value=0.036 Score=40.20 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=41.2
Q ss_pred CEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHH
Q 021494 110 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 189 (311)
Q Consensus 110 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 189 (311)
+.-+..|+.+||++|.+....|.+ . ++.+..++++.+.. ...+.
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~-------~---------gi~y~~idi~~~~~--------------------~~~~~ 50 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKE-------K---------GYDFEEIPLGNDAR--------------------GRSLR 50 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHH-------c---------CCCcEEEECCCChH--------------------HHHHH
Confidence 334567889999999988877742 1 45566677765431 22455
Q ss_pred HhCCCCccceEEEECCCCcEE
Q 021494 190 KYFDVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 190 ~~~~v~~~Pt~vlid~~G~iv 210 (311)
+.+|...+|.+++ +|+.+
T Consensus 51 ~~~g~~~vP~i~i---~g~~i 68 (79)
T TIGR02190 51 AVTGATTVPQVFI---GGKLI 68 (79)
T ss_pred HHHCCCCcCeEEE---CCEEE
Confidence 6678899999864 45543
No 194
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.06 E-value=0.0075 Score=45.07 Aligned_cols=37 Identities=41% Similarity=0.887 Sum_probs=31.4
Q ss_pred CCccccccCCHHHHHHHHhhcccCCCCeeEEecCCCCCCce
Q 021494 1 MPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDA 41 (311)
Q Consensus 1 ~~w~a~p~~d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~ 41 (311)
++|+.+|+.+. .+.+|.+.|+|.++|+++++++ +|++
T Consensus 59 ~~~~~~~~~~~-~~~~l~~~~~i~~iP~~~lld~---~G~I 95 (95)
T PF13905_consen 59 FPWYNVPFDDD-NNSELLKKYGINGIPTLVLLDP---DGKI 95 (95)
T ss_dssp TSSEEEETTTH-HHHHHHHHTT-TSSSEEEEEET---TSBE
T ss_pred CCceEEeeCcc-hHHHHHHHCCCCcCCEEEEECC---CCCC
Confidence 48999999775 4689999999999999999997 8864
No 195
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.01 E-value=0.021 Score=42.32 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=38.2
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
++.|..+|||+|.+....|.++..++. ++.+..++++.+... ..++.+.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-----------~i~~~~idi~~~~~~-------------------~~~l~~~~ 51 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-----------DFEFRYIDIHAEGIS-------------------KADLEKTV 51 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-----------CCcEEEEECCCCHHH-------------------HHHHHHHh
Confidence 567889999999999888876543321 355666666543211 22455555
Q ss_pred C--CCccceEEE
Q 021494 193 D--VQGIPCLVI 202 (311)
Q Consensus 193 ~--v~~~Pt~vl 202 (311)
+ +..+|.+++
T Consensus 52 g~~~~tVP~ifi 63 (86)
T TIGR02183 52 GKPVETVPQIFV 63 (86)
T ss_pred CCCCCCcCeEEE
Confidence 5 478999853
No 196
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=95.95 E-value=0.0048 Score=39.87 Aligned_cols=30 Identities=20% Similarity=0.702 Sum_probs=26.0
Q ss_pred ccccccCC-CcceeEeCCCC-CCCcccccccc
Q 021494 273 ICCDCDEQ-GSGWAYQCLEC-GYEVHPKCVRA 302 (311)
Q Consensus 273 ~Cd~C~~~-g~~w~~~C~~c-~~~~h~~c~~~ 302 (311)
.|++|+.. ..|-.|.|..| +|||...|-..
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 59999974 56899999999 79999999765
No 197
>PTZ00062 glutaredoxin; Provisional
Probab=95.93 E-value=0.11 Score=45.18 Aligned_cols=20 Identities=5% Similarity=-0.162 Sum_probs=16.4
Q ss_pred hcccCCCCeeEEecCCCCCCceee
Q 021494 20 KFDIEGIPCLVVLQPYDDKDDATL 43 (311)
Q Consensus 20 ~~~i~~~P~l~~~~~~~~~g~~~~ 43 (311)
.|+|.++|+++++. +|+.+.
T Consensus 57 d~~V~~vPtfv~~~----~g~~i~ 76 (204)
T PTZ00062 57 ADANNEYGVFEFYQ----NSQLIN 76 (204)
T ss_pred ccCcccceEEEEEE----CCEEEe
Confidence 39999999999998 676653
No 198
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.75 E-value=0.038 Score=54.75 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=46.7
Q ss_pred cCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHH
Q 021494 107 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIK 186 (311)
Q Consensus 107 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~ 186 (311)
+.+.+-+..|..+.||+|......++++... ++++..-.| |... ..
T Consensus 114 ~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-----------~~~i~~~~i--d~~~---------------------~~ 159 (517)
T PRK15317 114 LDGDFHFETYVSLSCHNCPDVVQALNLMAVL-----------NPNITHTMI--DGAL---------------------FQ 159 (517)
T ss_pred cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-----------CCCceEEEE--Echh---------------------CH
Confidence 3455668889999999999888877776654 235555555 4443 56
Q ss_pred HHHHhCCCCccceEEE
Q 021494 187 ELTKYFDVQGIPCLVI 202 (311)
Q Consensus 187 ~l~~~~~v~~~Pt~vl 202 (311)
++.+.|++.++|++++
T Consensus 160 ~~~~~~~v~~VP~~~i 175 (517)
T PRK15317 160 DEVEARNIMAVPTVFL 175 (517)
T ss_pred hHHHhcCCcccCEEEE
Confidence 8999999999999976
No 199
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.63 E-value=0.068 Score=37.90 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=38.3
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
+..|+.++||+|......|++ . ++.+-.++++.+.+. ..++.+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~---------~i~~~~i~i~~~~~~-------------------~~~~~~~~ 46 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------K---------GVDYEEIDVDGDPAL-------------------REEMINRS 46 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------C---------CCcEEEEECCCCHHH-------------------HHHHHHHh
Confidence 456888999999988776653 1 455666777665321 23455666
Q ss_pred CCC-ccceEEEECCCCcEE
Q 021494 193 DVQ-GIPCLVIIGPEGKTV 210 (311)
Q Consensus 193 ~v~-~~Pt~vlid~~G~iv 210 (311)
+.. .+|.++ +| |+.+
T Consensus 47 ~~~~~vP~v~-i~--g~~i 62 (75)
T cd03418 47 GGRRTVPQIF-IG--DVHI 62 (75)
T ss_pred CCCCccCEEE-EC--CEEE
Confidence 766 889764 53 4444
No 200
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.056 Score=54.20 Aligned_cols=81 Identities=22% Similarity=0.260 Sum_probs=54.9
Q ss_pred cCCCEEEEEEecCCChhhHhhhHHH---HHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCch
Q 021494 107 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDP 183 (311)
Q Consensus 107 ~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d 183 (311)
-.+|+|+|...++||-.|.-+...- .++++-+++. +|.|.+|.++ -|..+.
T Consensus 41 ~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~------------FV~IKVDREE--------------RPDvD~ 94 (667)
T COG1331 41 EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN------------FVPVKVDREE--------------RPDVDS 94 (667)
T ss_pred HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC------------ceeeeEChhh--------------ccCHHH
Confidence 3568999999999999999886532 2344444443 7888888765 122222
Q ss_pred hHHHHHHhC-CCCccceEEEECCCCcEEEec
Q 021494 184 TIKELTKYF-DVQGIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 184 ~~~~l~~~~-~v~~~Pt~vlid~~G~iv~~~ 213 (311)
--..+++.. |-.++|-+||+-|+|+..+..
T Consensus 95 ~Ym~~~q~~tG~GGWPLtVfLTPd~kPFfag 125 (667)
T COG1331 95 LYMNASQAITGQGGWPLTVFLTPDGKPFFAG 125 (667)
T ss_pred HHHHHHHHhccCCCCceeEEECCCCceeeee
Confidence 222344443 456899999999999998753
No 201
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.36 E-value=0.061 Score=38.76 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=38.0
Q ss_pred EEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhCC
Q 021494 114 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 193 (311)
Q Consensus 114 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 193 (311)
..|+.+|||+|......|.+ . ++.+-.++++.+.+. ..++.+..|
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~---------~i~~~~~di~~~~~~-------------------~~~~~~~~g 46 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------K---------GVTFTEIRVDGDPAL-------------------RDEMMQRSG 46 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------c---------CCCcEEEEecCCHHH-------------------HHHHHHHhC
Confidence 56788999999988887753 1 344555566655421 234556667
Q ss_pred CCccceEEEECCCCcEE
Q 021494 194 VQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 194 v~~~Pt~vlid~~G~iv 210 (311)
...+|++ ++| |+.+
T Consensus 47 ~~~vP~i-~i~--g~~i 60 (79)
T TIGR02181 47 RRTVPQI-FIG--DVHV 60 (79)
T ss_pred CCCcCEE-EEC--CEEE
Confidence 8889997 443 4443
No 202
>PHA03050 glutaredoxin; Provisional
Probab=95.36 E-value=0.037 Score=42.99 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=17.2
Q ss_pred EEEEecCCChhhHhhhHHHHHH
Q 021494 113 GLYFSARWCIPCEKFMPKLLSI 134 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l 134 (311)
++.|..+|||+|.+....|.+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc
Confidence 5568999999999887766543
No 203
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.33 E-value=0.067 Score=40.75 Aligned_cols=63 Identities=21% Similarity=0.353 Sum_probs=36.9
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
++.|..+|||+|.+....|.+. ++.+-.+.+|.+.+.. + ....+.+..
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~----------------~i~~~~vdid~~~~~~-~---------------~~~~l~~~t 57 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL----------------GVNPAVHEIDKEPAGK-D---------------IENALSRLG 57 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----------------CCCCEEEEcCCCccHH-H---------------HHHHHHHhc
Confidence 4568889999999877655432 2334455665443110 0 022455666
Q ss_pred CCCccceEEEECCCCcEE
Q 021494 193 DVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 193 ~v~~~Pt~vlid~~G~iv 210 (311)
|...+|.+ +|| |+.+
T Consensus 58 g~~tvP~V-fi~--g~~i 72 (99)
T TIGR02189 58 CSPAVPAV-FVG--GKLV 72 (99)
T ss_pred CCCCcCeE-EEC--CEEE
Confidence 88899997 453 4443
No 204
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.28 E-value=0.17 Score=43.78 Aligned_cols=92 Identities=20% Similarity=0.348 Sum_probs=65.5
Q ss_pred CeEeeCCCCceeecccc-CCC--EEEEEE-ec----CCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCC
Q 021494 91 GYLLGHPPDEKVPVSSL-VGK--TVGLYF-SA----RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 162 (311)
Q Consensus 91 df~l~~~g~~~v~l~~~-~gk--~vll~F-~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~ 162 (311)
++.++.... +.+|+++ .|| .+|-.| ++ ..|+.|...+..+......+... ++.+++||- ..
T Consensus 54 ~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~---------dv~lv~VsR-AP 122 (247)
T COG4312 54 DYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH---------DVTLVAVSR-AP 122 (247)
T ss_pred eeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc---------CceEEEEec-Cc
Confidence 456655555 6899886 555 333333 23 47999999999998888888754 788999974 34
Q ss_pred HHHHHHHHhcCCCcccccCchhHHHHHHhCCC
Q 021494 163 QTSFESYFGTMPWLALPFGDPTIKELTKYFDV 194 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 194 (311)
.+++..+-+.|+|. +|........+...|+|
T Consensus 123 l~~l~~~k~rmGW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 123 LEELVAYKRRMGWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred HHHHHHHHHhcCCc-ceeEeccCccccccccc
Confidence 67888888899987 77766655666677766
No 205
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=95.20 E-value=0.014 Score=38.53 Aligned_cols=31 Identities=26% Similarity=0.763 Sum_probs=27.5
Q ss_pred cccccccCCCcc-eeEeCCCC-CCCcccccccc
Q 021494 272 FICCDCDEQGSG-WAYQCLEC-GYEVHPKCVRA 302 (311)
Q Consensus 272 ~~Cd~C~~~g~~-w~~~C~~c-~~~~h~~c~~~ 302 (311)
+.|++|.+...+ -.|.|..| +|||...|-..
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~ 33 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSA 33 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhC
Confidence 469999998876 69999999 89999999876
No 206
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.19 E-value=0.038 Score=44.67 Aligned_cols=31 Identities=23% Similarity=0.334 Sum_probs=27.1
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKI 138 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~ 138 (311)
.++++++.|+..+||+|..+.+.+.++..++
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 4688999999999999999999998877654
No 207
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.07 E-value=0.2 Score=38.62 Aligned_cols=75 Identities=15% Similarity=0.280 Sum_probs=52.0
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKEL 188 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l 188 (311)
.++++|+=-++.|+........+++.++...+ .+.+..+.+=..+. -...+
T Consensus 19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~----------~~~~y~l~v~~~R~-------------------vSn~I 69 (105)
T PF11009_consen 19 EKPVLIFKHSTRCPISAMALREFEKFWEESPD----------EIPVYYLDVIEYRP-------------------VSNAI 69 (105)
T ss_dssp -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT--------------EEEEEGGGGHH-------------------HHHHH
T ss_pred cCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc----------cceEEEEEEEeCch-------------------hHHHH
Confidence 46788877899999999999988888877653 36777777644331 15689
Q ss_pred HHhCCCC-ccceEEEECCCCcEEEec
Q 021494 189 TKYFDVQ-GIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 189 ~~~~~v~-~~Pt~vlid~~G~iv~~~ 213 (311)
++.|||. --|.++|| ++|++++..
T Consensus 70 Ae~~~V~HeSPQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 70 AEDFGVKHESPQVILI-KNGKVVWHA 94 (105)
T ss_dssp HHHHT----SSEEEEE-ETTEEEEEE
T ss_pred HHHhCCCcCCCcEEEE-ECCEEEEEC
Confidence 9999997 56999999 899999764
No 208
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.06 E-value=0.13 Score=36.46 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=39.2
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
+..|..+||+.|++....|.+ + ++.+..++++.+.+. ..++.+..
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~---------gi~~~~~di~~~~~~-------------------~~el~~~~ 47 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------K---------GLPYVEINIDIFPER-------------------KAELEERT 47 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------C---------CCceEEEECCCCHHH-------------------HHHHHHHh
Confidence 345778999999988876653 2 456667777655421 34566666
Q ss_pred CCCccceEEEECCCCcEE
Q 021494 193 DVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 193 ~v~~~Pt~vlid~~G~iv 210 (311)
+-..+|.++ +| |+.+
T Consensus 48 g~~~vP~v~-i~--~~~i 62 (73)
T cd03027 48 GSSVVPQIF-FN--EKLV 62 (73)
T ss_pred CCCCcCEEE-EC--CEEE
Confidence 777888874 43 4444
No 209
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.99 E-value=0.38 Score=35.12 Aligned_cols=54 Identities=15% Similarity=0.350 Sum_probs=36.0
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
+..|..+||++|.+....|.+ + ++.+-.++++.+.+. ...+ +..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~---------gI~~~~idi~~~~~~-------------------~~~~-~~~ 46 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R---------GFDFEMINVDRVPEA-------------------AETL-RAQ 46 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C---------CCceEEEECCCCHHH-------------------HHHH-HHc
Confidence 456788999999987776632 2 577777777765421 1123 335
Q ss_pred CCCccceEEE
Q 021494 193 DVQGIPCLVI 202 (311)
Q Consensus 193 ~v~~~Pt~vl 202 (311)
|...+|.+++
T Consensus 47 g~~~vPvv~i 56 (81)
T PRK10329 47 GFRQLPVVIA 56 (81)
T ss_pred CCCCcCEEEE
Confidence 7889999864
No 210
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=94.98 E-value=0.0084 Score=39.00 Aligned_cols=33 Identities=27% Similarity=0.752 Sum_probs=25.2
Q ss_pred CCcccccccC-CCcceeEeCCCC-CCCcccccccc
Q 021494 270 GPFICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA 302 (311)
Q Consensus 270 ~~~~Cd~C~~-~g~~w~~~C~~c-~~~~h~~c~~~ 302 (311)
..+.|++|+. ...+-.|.|..| +|||...|-..
T Consensus 3 ~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~ 37 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK 37 (46)
T ss_dssp SSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred CCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence 4578999999 556889999999 79999999766
No 211
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=94.98 E-value=0.12 Score=36.51 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=38.6
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
++.|..+|||+|.+....|.+ . ++.+..++++.+.. ...+.+..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~---------~i~~~~~~v~~~~~--------------------~~~~~~~~ 46 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------N---------GISYEEIPLGKDIT--------------------GRSLRAVT 46 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------c---------CCCcEEEECCCChh--------------------HHHHHHHh
Confidence 456788999999988766652 1 45566666665431 22455667
Q ss_pred CCCccceEEEECCCCcEE
Q 021494 193 DVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 193 ~v~~~Pt~vlid~~G~iv 210 (311)
|...+|.+ ++| |+.+
T Consensus 47 g~~~vP~i-fi~--g~~i 61 (72)
T cd03029 47 GAMTVPQV-FID--GELI 61 (72)
T ss_pred CCCCcCeE-EEC--CEEE
Confidence 88999997 564 4443
No 212
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=94.95 E-value=0.55 Score=37.15 Aligned_cols=63 Identities=19% Similarity=0.365 Sum_probs=50.4
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
..|.|+|-|.-.|-|.|..+...|.++.....+- .+|..|.+|. .+.
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf----------a~Iylvdide-----------------------V~~ 68 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF----------AVIYLVDIDE-----------------------VPD 68 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc----------eEEEEEecch-----------------------hhh
Confidence 3479999999999999999999999999988752 4455555554 457
Q ss_pred HHHhCCCCccceEEEE
Q 021494 188 LTKYFDVQGIPCLVII 203 (311)
Q Consensus 188 l~~~~~v~~~Pt~vli 203 (311)
+.+.|++...|+++++
T Consensus 69 ~~~~~~l~~p~tvmfF 84 (142)
T KOG3414|consen 69 FVKMYELYDPPTVMFF 84 (142)
T ss_pred hhhhhcccCCceEEEE
Confidence 8899999999987665
No 213
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=94.88 E-value=0.022 Score=36.58 Aligned_cols=33 Identities=27% Similarity=0.776 Sum_probs=28.5
Q ss_pred CCcccccccCCCcceeEeCCCC-CCCcccccccc
Q 021494 270 GPFICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA 302 (311)
Q Consensus 270 ~~~~Cd~C~~~g~~w~~~C~~c-~~~~h~~c~~~ 302 (311)
..+.|+.|+....+-.|.|..| +|||.+.|-.+
T Consensus 3 ~~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~ 36 (44)
T smart00291 3 HSYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK 36 (44)
T ss_pred CCcCCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence 3467999999667889999999 89999999776
No 214
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.72 E-value=0.12 Score=42.20 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=40.4
Q ss_pred eeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecC
Q 021494 101 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 160 (311)
Q Consensus 101 ~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d 160 (311)
.+.+.+-.++++|+.|+...||+|.++.+.+.++.+++-+ ...+.++++.+-
T Consensus 4 ~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~--------~~~v~~~~~~~~ 55 (162)
T PF13462_consen 4 DPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYID--------PGKVKFVFRPVP 55 (162)
T ss_dssp SEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--------TTTEEEEEEESS
T ss_pred CCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC--------CCceEEEEEEcc
Confidence 3445556678999999999999999999999999999832 236888888774
No 215
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=94.71 E-value=0.021 Score=37.67 Aligned_cols=30 Identities=30% Similarity=0.861 Sum_probs=25.9
Q ss_pred ccccccC-CCcceeEeCCCC-CCCcccccccc
Q 021494 273 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA 302 (311)
Q Consensus 273 ~Cd~C~~-~g~~w~~~C~~c-~~~~h~~c~~~ 302 (311)
.|++|++ ...|-.|.|..| +|||...|-..
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~ 33 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDS 33 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhC
Confidence 5999995 556889999999 89999999776
No 216
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=94.63 E-value=0.024 Score=37.43 Aligned_cols=30 Identities=27% Similarity=0.712 Sum_probs=26.0
Q ss_pred ccccccC-CCcceeEeCCCC-CCCcccccccc
Q 021494 273 ICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRA 302 (311)
Q Consensus 273 ~Cd~C~~-~g~~w~~~C~~c-~~~~h~~c~~~ 302 (311)
.|++|++ ...+-.|.|..| +|||...|-..
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~ 33 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTK 33 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHhC
Confidence 5899999 556789999999 89999999775
No 217
>PRK10638 glutaredoxin 3; Provisional
Probab=94.59 E-value=0.24 Score=36.13 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=38.7
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
+..|..+||++|.+....|.+ + ++.+..+++|.+.+. ...+.+..
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~---------gi~y~~~dv~~~~~~-------------------~~~l~~~~ 48 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------K---------GVSFQEIPIDGDAAK-------------------REEMIKRS 48 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------c---------CCCcEEEECCCCHHH-------------------HHHHHHHh
Confidence 446778999999988776653 1 344555666654321 23556666
Q ss_pred CCCccceEEEECCCCcEE
Q 021494 193 DVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 193 ~v~~~Pt~vlid~~G~iv 210 (311)
+...+|+++ + +|+.+
T Consensus 49 g~~~vP~i~-~--~g~~i 63 (83)
T PRK10638 49 GRTTVPQIF-I--DAQHI 63 (83)
T ss_pred CCCCcCEEE-E--CCEEE
Confidence 888899774 4 46655
No 218
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=94.52 E-value=0.025 Score=37.10 Aligned_cols=32 Identities=31% Similarity=0.752 Sum_probs=27.7
Q ss_pred cccccccC-CCcceeEeCCCCC---CCccccccccc
Q 021494 272 FICCDCDE-QGSGWAYQCLECG---YEVHPKCVRAV 303 (311)
Q Consensus 272 ~~Cd~C~~-~g~~w~~~C~~c~---~~~h~~c~~~~ 303 (311)
+.|++|+. ...+-.|.|..|. |||...|....
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~ 36 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKG 36 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCc
Confidence 46999998 6679999999997 99999997653
No 219
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.45 E-value=0.19 Score=50.25 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=49.1
Q ss_pred ccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhH
Q 021494 106 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 185 (311)
Q Consensus 106 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~ 185 (311)
.+++.+.|+.|+...|..|......|.++.. +. +.+.+..+..+. +
T Consensus 363 ~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s----------~~i~~~~~~~~~-----------------------~ 408 (555)
T TIGR03143 363 RLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LS----------EKLNSEAVNRGE-----------------------E 408 (555)
T ss_pred hcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cC----------CcEEEEEecccc-----------------------c
Confidence 4566778889998888888777766666553 33 345565544333 4
Q ss_pred HHHHHhCCCCccceEEEECCCCc
Q 021494 186 KELTKYFDVQGIPCLVIIGPEGK 208 (311)
Q Consensus 186 ~~l~~~~~v~~~Pt~vlid~~G~ 208 (311)
.++.+.|+|...|++.|++.+|+
T Consensus 409 ~~~~~~~~v~~~P~~~i~~~~~~ 431 (555)
T TIGR03143 409 PESETLPKITKLPTVALLDDDGN 431 (555)
T ss_pred hhhHhhcCCCcCCEEEEEeCCCc
Confidence 47889999999999999976653
No 220
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.43 E-value=0.18 Score=50.07 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=45.8
Q ss_pred ccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhH
Q 021494 106 SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 185 (311)
Q Consensus 106 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~ 185 (311)
.+.+++-+..|..+.||+|......++++... ++++..-. +|... .
T Consensus 114 ~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~-----------~p~i~~~~--id~~~---------------------~ 159 (515)
T TIGR03140 114 RLNGPLHFETYVSLTCQNCPDVVQALNQMALL-----------NPNISHTM--IDGAL---------------------F 159 (515)
T ss_pred hcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh-----------CCCceEEE--EEchh---------------------C
Confidence 34556678889999999999877777666554 23455444 44443 5
Q ss_pred HHHHHhCCCCccceEEE
Q 021494 186 KELTKYFDVQGIPCLVI 202 (311)
Q Consensus 186 ~~l~~~~~v~~~Pt~vl 202 (311)
.++.+.|++.++|++++
T Consensus 160 ~~~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 160 QDEVEALGIQGVPAVFL 176 (515)
T ss_pred HHHHHhcCCcccCEEEE
Confidence 68899999999999986
No 221
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.41 E-value=0.012 Score=51.23 Aligned_cols=68 Identities=21% Similarity=0.350 Sum_probs=49.8
Q ss_pred EEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHh
Q 021494 112 VGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKY 191 (311)
Q Consensus 112 vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~ 191 (311)
.++.|+|+|||.|....|.+..++.--.+ =++.|-.|.+-. +..|.-+
T Consensus 42 wmi~~~ap~~psc~~~~~~~~~~a~~s~d---------L~v~va~VDvt~-----------------------npgLsGR 89 (248)
T KOG0913|consen 42 WMIEFGAPWCPSCSDLIPHLENFATVSLD---------LGVKVAKVDVTT-----------------------NPGLSGR 89 (248)
T ss_pred HHHHhcCCCCccccchHHHHhccCCccCC---------CceeEEEEEEEe-----------------------cccccee
Confidence 67889999999999999998776554322 144444443322 3367788
Q ss_pred CCCCccceEEEECCCCcEEEe
Q 021494 192 FDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 192 ~~v~~~Pt~vlid~~G~iv~~ 212 (311)
|-|.+.|+++=+ ++|.....
T Consensus 90 F~vtaLptIYHv-kDGeFrry 109 (248)
T KOG0913|consen 90 FLVTALPTIYHV-KDGEFRRY 109 (248)
T ss_pred eEEEecceEEEe-eccccccc
Confidence 889999999999 88887744
No 222
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=94.38 E-value=0.41 Score=42.93 Aligned_cols=116 Identities=12% Similarity=0.127 Sum_probs=65.4
Q ss_pred CCCCeEe-eCCCCceeeccc-cCCCEEEEEEe-cCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHH
Q 021494 88 HDRGYLL-GHPPDEKVPVSS-LVGKTVGLYFS-ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT 164 (311)
Q Consensus 88 ~~pdf~l-~~~g~~~v~l~~-~~gk~vll~F~-a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~ 164 (311)
-.|++.- +.+|+ .+++.+ ++||+.||-.+ ..|-..|... ......++|... .+..+++|-|++-.+.-
T Consensus 100 yFP~l~g~tL~g~-~~~~~~~l~gkvSlV~l~s~~~ge~~~~s--w~~p~~~~~~~~------~~~~~q~v~In~~e~~~ 170 (252)
T PF05176_consen 100 YFPNLQGKTLAGN-KVDTTDLLRGKVSLVCLFSSAWGEEMVDS--WTSPFLEDFLQE------PYGRVQIVEINLIENWL 170 (252)
T ss_pred cCCCCccccCCCC-CcccccccCCceEEEEEeehHHHHHHHHH--HhhHHHHHHhhC------CCCceEEEEEecchHHH
Confidence 3477776 77787 777654 68997554444 3443322221 112344455432 02279999999866431
Q ss_pred -H-HHHHH-hc----CC---CcccccCch--hHHHHHHhCCCCc--cceEEEECCCCcEEEe
Q 021494 165 -S-FESYF-GT----MP---WLALPFGDP--TIKELTKYFDVQG--IPCLVIIGPEGKTVTK 212 (311)
Q Consensus 165 -~-~~~~~-~~----~~---~~~~p~~~d--~~~~l~~~~~v~~--~Pt~vlid~~G~iv~~ 212 (311)
. +...+ .. .+ |..+-+..+ ....+.+.+++.. +..+||+|++|+|+..
T Consensus 171 k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWa 232 (252)
T PF05176_consen 171 KSWLVKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWA 232 (252)
T ss_pred HHHHHHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeC
Confidence 1 11111 11 11 222222222 2457888888864 5789999999999988
No 223
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=94.10 E-value=0.022 Score=51.84 Aligned_cols=33 Identities=24% Similarity=0.675 Sum_probs=29.2
Q ss_pred CcccccccC-CCcceeEeCCCC-CCCccccccccc
Q 021494 271 PFICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRAV 303 (311)
Q Consensus 271 ~~~Cd~C~~-~g~~w~~~C~~c-~~~~h~~c~~~~ 303 (311)
...||.|+. ...|-+|.|..| +|||+.+|-.+.
T Consensus 152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred cccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 358999999 556999999999 899999998874
No 224
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=93.86 E-value=0.29 Score=34.64 Aligned_cols=53 Identities=15% Similarity=0.292 Sum_probs=35.1
Q ss_pred EEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhCC
Q 021494 114 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFD 193 (311)
Q Consensus 114 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~ 193 (311)
..|..++|++|......|.+ + ++.+-.++++.+.+. ...+. ..|
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~---------~i~~~~~di~~~~~~-------------------~~~~~-~~g 45 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------H---------GIAFEEINIDEQPEA-------------------IDYVK-AQG 45 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------C---------CCceEEEECCCCHHH-------------------HHHHH-HcC
Confidence 45778999999988877753 2 466777777765421 12333 348
Q ss_pred CCccceEEE
Q 021494 194 VQGIPCLVI 202 (311)
Q Consensus 194 v~~~Pt~vl 202 (311)
...+|.+++
T Consensus 46 ~~~vP~v~~ 54 (72)
T TIGR02194 46 FRQVPVIVA 54 (72)
T ss_pred CcccCEEEE
Confidence 888999654
No 225
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.85 E-value=0.3 Score=36.33 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=38.5
Q ss_pred CCEEEEEEec----CCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchh
Q 021494 109 GKTVGLYFSA----RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 184 (311)
Q Consensus 109 gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~ 184 (311)
.+.|+|+--. +|||+|.+....|.+. ++.+-.++++.+.+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~----------------~i~y~~idv~~~~~~------------------- 51 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL----------------GVDFGTFDILEDEEV------------------- 51 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc----------------CCCeEEEEcCCCHHH-------------------
Confidence 4455554332 6999999877766543 234555555544311
Q ss_pred HHHHHHhCCCCccceEEEECCCCcEE
Q 021494 185 IKELTKYFDVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~~G~iv 210 (311)
...+.+..|...+|.+| +| |+.+
T Consensus 52 ~~~l~~~~g~~tvP~vf-i~--g~~i 74 (90)
T cd03028 52 RQGLKEYSNWPTFPQLY-VN--GELV 74 (90)
T ss_pred HHHHHHHhCCCCCCEEE-EC--CEEE
Confidence 34666777888899974 54 5544
No 226
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=93.77 E-value=0.032 Score=44.20 Aligned_cols=31 Identities=13% Similarity=0.276 Sum_probs=25.3
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecCCCCCCceeec
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLH 44 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~~~ 44 (311)
|.+.+.+|+++|+|+++||++++. +|+.+..
T Consensus 72 D~d~~~~La~~~~I~~iPTl~lfk----~G~~v~~ 102 (120)
T cd03065 72 DSKKDAKVAKKLGLDEEDSIYVFK----DDEVIEY 102 (120)
T ss_pred eCCCCHHHHHHcCCccccEEEEEE----CCEEEEe
Confidence 445568999999999999999998 6876543
No 227
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.69 E-value=0.3 Score=41.57 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=56.8
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
+..-|++.||-+.-..|+-+-..|..+++.+- ...+|-|+... .+-
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-----------eTrFikvnae~-----------------------~PF 128 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-----------ETRFIKVNAEK-----------------------APF 128 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhcc-----------cceEEEEeccc-----------------------Cce
Confidence 44679999999988899999999998888765 34567776544 236
Q ss_pred HHHhCCCCccceEEEECCCCcEEEe
Q 021494 188 LTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
++.+++|..+|++.++ .+|+.+.+
T Consensus 129 lv~kL~IkVLP~v~l~-k~g~~~D~ 152 (211)
T KOG1672|consen 129 LVTKLNIKVLPTVALF-KNGKTVDY 152 (211)
T ss_pred eeeeeeeeEeeeEEEE-EcCEEEEE
Confidence 7889999999999999 88988876
No 228
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.31 E-value=0.41 Score=36.25 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=37.8
Q ss_pred CEEEEEEe----cCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhH
Q 021494 110 KTVGLYFS----ARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTI 185 (311)
Q Consensus 110 k~vll~F~----a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~ 185 (311)
+.|+|+-. ++|||+|.+....|.+. ++.+..++++.+.+. .
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------------~i~~~~~di~~~~~~-------------------~ 56 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC----------------GVPFAYVNVLEDPEI-------------------R 56 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc----------------CCCEEEEECCCCHHH-------------------H
Confidence 34555443 38999999877766442 344556666554321 3
Q ss_pred HHHHHhCCCCccceEEEECCCCcEE
Q 021494 186 KELTKYFDVQGIPCLVIIGPEGKTV 210 (311)
Q Consensus 186 ~~l~~~~~v~~~Pt~vlid~~G~iv 210 (311)
..+.+..|...+|.++ || |+.+
T Consensus 57 ~~l~~~tg~~tvP~vf-i~--g~~i 78 (97)
T TIGR00365 57 QGIKEYSNWPTIPQLY-VK--GEFV 78 (97)
T ss_pred HHHHHHhCCCCCCEEE-EC--CEEE
Confidence 3556666778889875 53 4443
No 229
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=93.02 E-value=0.062 Score=35.76 Aligned_cols=36 Identities=31% Similarity=0.619 Sum_probs=28.5
Q ss_pred CCCcccccccCCC---cceeEeCCCCCCCcccccccccc
Q 021494 269 GGPFICCDCDEQG---SGWAYQCLECGYEVHPKCVRAVD 304 (311)
Q Consensus 269 ~~~~~Cd~C~~~g---~~w~~~C~~c~~~~h~~c~~~~~ 304 (311)
..+-.|+.|++.. ....|.|..|++-.|.+|+....
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~ 47 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVP 47 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSS
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcC
Confidence 4677999999977 35599999999999999998754
No 230
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.91 E-value=0.55 Score=34.20 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=15.9
Q ss_pred EEEEecCCChhhHhhhHHHH
Q 021494 113 GLYFSARWCIPCEKFMPKLL 132 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~ 132 (311)
+..|.-++||+|.+....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45677899999998877665
No 231
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=92.87 E-value=0.066 Score=34.91 Aligned_cols=35 Identities=29% Similarity=0.564 Sum_probs=29.9
Q ss_pred CCcccccccCCCcc---eeEeCCCCCCCcccccccccc
Q 021494 270 GPFICCDCDEQGSG---WAYQCLECGYEVHPKCVRAVD 304 (311)
Q Consensus 270 ~~~~Cd~C~~~g~~---w~~~C~~c~~~~h~~c~~~~~ 304 (311)
.+..|..|++...+ ..|.|..|++-.|.+|+..+.
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~ 47 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVP 47 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhccCC
Confidence 46689999997764 899999999999999998754
No 232
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=92.68 E-value=0.067 Score=30.29 Aligned_cols=23 Identities=30% Similarity=0.765 Sum_probs=21.3
Q ss_pred ccccccCCCcceeEeCCCCCCCc
Q 021494 273 ICCDCDEQGSGWAYQCLECGYEV 295 (311)
Q Consensus 273 ~Cd~C~~~g~~w~~~C~~c~~~~ 295 (311)
.|+.|+...+.-+-.|+.|+|++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 48999999999999999999986
No 233
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=0.91 Score=37.14 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=76.2
Q ss_pred HhcCCCCCeEe-eC------CCCceeeccc-cCCCEEEEE-EecCCChhhHh-hhHHHHHHHHHHHhhhhhcCCCCCCeE
Q 021494 84 LLTNHDRGYLL-GH------PPDEKVPVSS-LVGKTVGLY-FSARWCIPCEK-FMPKLLSIYQKIKQNLVEKGDALEDFE 153 (311)
Q Consensus 84 ~~g~~~pdf~l-~~------~g~~~v~l~~-~~gk~vll~-F~a~wC~~C~~-~~p~l~~l~~~~~~~~~~~~~~~~~~~ 153 (311)
++|++.|.-++ .. .|-..++..+ ++||.|+|+ .-+...|.|.. .+|.+.+++++++.+ .-=+
T Consensus 4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~k--------GVD~ 75 (165)
T COG0678 4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAK--------GVDE 75 (165)
T ss_pred ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHc--------CCce
Confidence 46788887776 22 2222444444 467765553 23457788887 899999999999976 1235
Q ss_pred EEEEecCCC--HHHHHHHHhcCCCcccccCchhHHHHHHhCC-----------CCccceEEEECCCCcEEEec
Q 021494 154 VVFVSTDRD--QTSFESYFGTMPWLALPFGDPTIKELTKYFD-----------VQGIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 154 vv~Vs~d~~--~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~-----------v~~~Pt~vlid~~G~iv~~~ 213 (311)
|+.||+++. ..+|.+...... ++.+..|.+.++.+..| +++.....++ .+|.|...+
T Consensus 76 I~cVSVND~FVm~AWak~~g~~~--~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 76 IYCVSVNDAFVMNAWAKSQGGEG--NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred EEEEEeCcHHHHHHHHHhcCCCc--cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence 777888764 356666665442 44455555667777655 3556667777 788887653
No 234
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=92.17 E-value=4.2 Score=32.56 Aligned_cols=62 Identities=21% Similarity=0.414 Sum_probs=46.7
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
..|+|+|-|.-.|-+.|.++-..|.++.++.++- ..|..|.++.- +.
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~----------a~IY~vDi~~V-----------------------pd 65 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF----------AVIYLVDIDEV-----------------------PD 65 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT----------EEEEEEETTTT-----------------------HC
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc----------eEEEEEEcccc-----------------------hh
Confidence 3589999999999999999999999999988752 55666666653 35
Q ss_pred HHHhCCCCccceEEEE
Q 021494 188 LTKYFDVQGIPCLVII 203 (311)
Q Consensus 188 l~~~~~v~~~Pt~vli 203 (311)
+.+.|.+. .|.++++
T Consensus 66 fn~~yel~-dP~tvmF 80 (133)
T PF02966_consen 66 FNQMYELY-DPCTVMF 80 (133)
T ss_dssp CHHHTTS--SSEEEEE
T ss_pred hhcccccC-CCeEEEE
Confidence 67888888 7865544
No 235
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=3.3 Score=38.00 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=59.0
Q ss_pred eeccccCCCEEEEEEecC----CChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcc
Q 021494 102 VPVSSLVGKTVGLYFSAR----WCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA 177 (311)
Q Consensus 102 v~l~~~~gk~vll~F~a~----wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~ 177 (311)
+..+..++=.+++.|.|. .|.-|..+..+++-+++.+.... ....+-.+.+-.+|-++
T Consensus 53 ~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~----~~sn~tklFF~~Vd~~e-------------- 114 (331)
T KOG2603|consen 53 FVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNS----PFSNGTKLFFCMVDYDE-------------- 114 (331)
T ss_pred hccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccC----CCCCcceEEEEEEeccc--------------
Confidence 333445555678888874 79999999999999988876540 01122345555555444
Q ss_pred cccCchhHHHHHHhCCCCccceEEEECC-CCcEE
Q 021494 178 LPFGDPTIKELTKYFDVQGIPCLVIIGP-EGKTV 210 (311)
Q Consensus 178 ~p~~~d~~~~l~~~~~v~~~Pt~vlid~-~G~iv 210 (311)
..++.+.++++..|+++++.| .|++.
T Consensus 115 -------~p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 115 -------SPQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred -------cHHHHHHhcccCCCeEEEeCCCccccc
Confidence 568999999999999999976 56655
No 236
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.06 E-value=0.52 Score=33.75 Aligned_cols=70 Identities=21% Similarity=0.387 Sum_probs=46.1
Q ss_pred EEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHh---cCCCcccccCchhHHHHHH
Q 021494 114 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFG---TMPWLALPFGDPTIKELTK 190 (311)
Q Consensus 114 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~---~~~~~~~p~~~d~~~~l~~ 190 (311)
+.|++..||.|......|.++ ++..=+|.+-.+.+++++|+. .++ .-.-.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl----------------~v~yd~VeIt~Sm~NlKrFl~lRDs~~----------~Fd~vk 58 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL----------------NVDYDFVEITESMANLKRFLHLRDSRP----------EFDEVK 58 (85)
T ss_pred eeeccccCcchHHHHHHHHHc----------------CCCceeeehhhhhhhHHHHHhhhccch----------hHHhhh
Confidence 568899999998777666543 233445555666777888776 222 223356
Q ss_pred hCCCCccceEEEECCCCcEEE
Q 021494 191 YFDVQGIPCLVIIGPEGKTVT 211 (311)
Q Consensus 191 ~~~v~~~Pt~vlid~~G~iv~ 211 (311)
.+|--+||.+.+ .+|++|-
T Consensus 59 ~~gyiGIPall~--~d~~vVl 77 (85)
T COG4545 59 SNGYIGIPALLT--DDGKVVL 77 (85)
T ss_pred hcCcccceEEEe--CCCcEEE
Confidence 778889998665 4677764
No 237
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=90.96 E-value=0.13 Score=41.42 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=24.5
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
|.+.+..|+.+|+|.++||++++. +|+.+
T Consensus 76 DiD~~~~LA~~fgV~siPTLl~Fk----dGk~v 104 (132)
T PRK11509 76 DLEQSEAIGDRFGVFRFPATLVFT----GGNYR 104 (132)
T ss_pred ECCCCHHHHHHcCCccCCEEEEEE----CCEEE
Confidence 344568999999999999999999 67765
No 238
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=90.39 E-value=1.3 Score=34.22 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhCCC
Q 021494 131 LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDV 194 (311)
Q Consensus 131 l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v 194 (311)
|.+...++... ++.+|.|...+... .++|.+... ..+|+..|+...+-+.+|+
T Consensus 2 L~~~~~~l~~~---------gv~lv~I~~g~~~~-~~~f~~~~~-~p~~ly~D~~~~lY~~lg~ 54 (115)
T PF13911_consen 2 LSRRKPELEAA---------GVKLVVIGCGSPEG-IEKFCELTG-FPFPLYVDPERKLYKALGL 54 (115)
T ss_pred hhHhHHHHHHc---------CCeEEEEEcCCHHH-HHHHHhccC-CCCcEEEeCcHHHHHHhCC
Confidence 34455566544 78899998876544 667765544 3555656656666666655
No 239
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=90.22 E-value=0.13 Score=32.46 Aligned_cols=32 Identities=19% Similarity=0.730 Sum_probs=26.0
Q ss_pred cccccccCCCcceeEeCCCC-CCCcccccccccc
Q 021494 272 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRAVD 304 (311)
Q Consensus 272 ~~Cd~C~~~g~~w~~~C~~c-~~~~h~~c~~~~~ 304 (311)
|.|+.|... .+-.|.|..| +|||...|-....
T Consensus 1 y~C~~C~~~-~~~r~~C~~C~dfDLC~~C~~~~~ 33 (41)
T cd02337 1 YTCNECKHH-VETRWHCTVCEDYDLCITCYNTKN 33 (41)
T ss_pred CcCCCCCCc-CCCceECCCCcchhhHHHHhCCCC
Confidence 458999884 4688889999 7999999987733
No 240
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=89.63 E-value=0.2 Score=39.08 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=23.3
Q ss_pred HHHHHHHhhcccCCCCeeEEecCCCCCCceee
Q 021494 12 ETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 43 (311)
Q Consensus 12 ~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~~ 43 (311)
+.+..|+.+|+|+++||++++. +|+.+.
T Consensus 70 d~~~~la~~f~V~sIPTli~fk----dGk~v~ 97 (111)
T cd02965 70 ADEQALAARFGVLRTPALLFFR----DGRYVG 97 (111)
T ss_pred CCCHHHHHHcCCCcCCEEEEEE----CCEEEE
Confidence 3456899999999999999998 677653
No 241
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=89.57 E-value=1.5 Score=31.90 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=41.8
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
|+.|..+.|+-|......|.++... ..+++-.|+++.+. ++.++|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~------------~~~~l~~vDI~~d~-----------------------~l~~~Y 46 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE------------FPFELEEVDIDEDP-----------------------ELFEKY 46 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT------------STCEEEEEETTTTH-----------------------HHHHHS
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh------------cCceEEEEECCCCH-----------------------HHHHHh
Confidence 5678889999999888877664332 35889999988654 688899
Q ss_pred CCCccceEEEEC
Q 021494 193 DVQGIPCLVIIG 204 (311)
Q Consensus 193 ~v~~~Pt~vlid 204 (311)
+. .+|.+.+-+
T Consensus 47 ~~-~IPVl~~~~ 57 (81)
T PF05768_consen 47 GY-RIPVLHIDG 57 (81)
T ss_dssp CT-STSEEEETT
T ss_pred cC-CCCEEEEcC
Confidence 96 689866654
No 242
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=88.71 E-value=0.18 Score=32.44 Aligned_cols=36 Identities=31% Similarity=0.652 Sum_probs=29.2
Q ss_pred CCCcccccccCCCcc--eeEeCCCCCCCcccccccccc
Q 021494 269 GGPFICCDCDEQGSG--WAYQCLECGYEVHPKCVRAVD 304 (311)
Q Consensus 269 ~~~~~Cd~C~~~g~~--w~~~C~~c~~~~h~~c~~~~~ 304 (311)
..+..|..|++...+ -.+.|..|++-.|.+|+....
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v~ 46 (49)
T smart00109 9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKVP 46 (49)
T ss_pred CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhhcC
Confidence 346689999997653 279999999999999998754
No 243
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.22 E-value=2.9 Score=32.15 Aligned_cols=20 Identities=25% Similarity=0.319 Sum_probs=14.5
Q ss_pred EEEEecCCChhhHhhhHHHH
Q 021494 113 GLYFSARWCIPCEKFMPKLL 132 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~ 132 (311)
+|.|.-+||++|.+....|.
T Consensus 16 VVifSKs~C~~c~~~k~ll~ 35 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLS 35 (104)
T ss_pred EEEEECCcCchHHHHHHHHH
Confidence 45588999999998444433
No 244
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=86.79 E-value=8.6 Score=30.15 Aligned_cols=89 Identities=16% Similarity=0.213 Sum_probs=50.7
Q ss_pred ccccCCCE-EEEEEec-CCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccC
Q 021494 104 VSSLVGKT-VGLYFSA-RWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFG 181 (311)
Q Consensus 104 l~~~~gk~-vll~F~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~ 181 (311)
|+++++|- +||.|.. .--+.=..+...|.+....+.++ ++.++.+.-+.... ..-+..
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR---------di~v~~i~~~~~~~-----------~~~~~~ 62 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER---------DIVVIVITGDGARS-----------PGKPLS 62 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC---------ceEEEEEeCCcccc-----------ccCcCC
Confidence 45666654 3444432 23334445555565555556655 67777774333221 011122
Q ss_pred chhHHHHHHhCCCCc-cceEEEECCCCcEEEe
Q 021494 182 DPTIKELTKYFDVQG-IPCLVIIGPEGKTVTK 212 (311)
Q Consensus 182 ~d~~~~l~~~~~v~~-~Pt~vlid~~G~iv~~ 212 (311)
......+.+.|++.. --+++||++||.+..+
T Consensus 63 ~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 63 PEDIQALRKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred HHHHHHHHHHhCCCCCceEEEEEeCCCcEEEe
Confidence 223568899999752 3578999999999887
No 245
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=86.53 E-value=1.1 Score=43.04 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=36.9
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYF 192 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~ 192 (311)
++.|..+|||+|.+....|.+ + ++.+-.|.+|.+.+. .+...+.. ...+.+..
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~---------gi~~~~idi~~~~~~-~~~~~~~~----------~~~~~~~~ 56 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------N---------DIPFTQISLDDDVKR-AEFYAEVN----------KNILLVEE 56 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------C---------CCCeEEEECCCChhH-HHHHHHHh----------hccccccC
Confidence 567889999999987766543 1 455556666654421 12211110 11234456
Q ss_pred CCCccceEEE
Q 021494 193 DVQGIPCLVI 202 (311)
Q Consensus 193 ~v~~~Pt~vl 202 (311)
|...+|++++
T Consensus 57 g~~tvP~ifi 66 (410)
T PRK12759 57 HIRTVPQIFV 66 (410)
T ss_pred CCCccCeEEE
Confidence 7888998865
No 246
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=86.38 E-value=6 Score=31.58 Aligned_cols=51 Identities=20% Similarity=0.388 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhCCCC--ccceEEEE
Q 021494 126 KFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQ--GIPCLVII 203 (311)
Q Consensus 126 ~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~--~~Pt~vli 203 (311)
.....|.+++++|+++ .+.++.++.+... .+.+.||+. .+|+++++
T Consensus 41 ~~~~~l~~vAk~~kgk---------~i~Fv~vd~~~~~-----------------------~~~~~fgl~~~~~P~v~i~ 88 (130)
T cd02983 41 KYLEILKSVAEKFKKK---------PWGWLWTEAGAQL-----------------------DLEEALNIGGFGYPAMVAI 88 (130)
T ss_pred HHHHHHHHHHHHhcCC---------cEEEEEEeCcccH-----------------------HHHHHcCCCccCCCEEEEE
Confidence 3466777888888753 3677777666533 488999985 59999999
Q ss_pred CCCCc
Q 021494 204 GPEGK 208 (311)
Q Consensus 204 d~~G~ 208 (311)
+.++.
T Consensus 89 ~~~~~ 93 (130)
T cd02983 89 NFRKM 93 (130)
T ss_pred ecccC
Confidence 88654
No 247
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=86.14 E-value=0.99 Score=34.39 Aligned_cols=27 Identities=22% Similarity=0.576 Sum_probs=21.5
Q ss_pred HHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 13 TKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 13 ~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
.+.++.++|+|+++|++++++. +|+.+
T Consensus 70 ~~~~l~~~~~v~gtPt~~~~d~---~G~~v 96 (112)
T PF13098_consen 70 SNKELAQRYGVNGTPTIVFLDK---DGKIV 96 (112)
T ss_dssp HHHHHHHHTT--SSSEEEECTT---TSCEE
T ss_pred HHHHHHHHcCCCccCEEEEEcC---CCCEE
Confidence 4568999999999999999996 88865
No 248
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=85.94 E-value=0.72 Score=36.26 Aligned_cols=21 Identities=10% Similarity=0.488 Sum_probs=19.2
Q ss_pred HHHHHHhhcccC--CCCeeEEec
Q 021494 13 TKKALNRKFDIE--GIPCLVVLQ 33 (311)
Q Consensus 13 ~~~~l~~~~~i~--~~P~l~~~~ 33 (311)
.+++|+.+|+|+ ++||+.++.
T Consensus 66 ~~~~L~~~y~I~~~gyPTl~lF~ 88 (116)
T cd03007 66 LNMELGERYKLDKESYPVIYLFH 88 (116)
T ss_pred hhHHHHHHhCCCcCCCCEEEEEe
Confidence 468899999999 999999987
No 249
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=85.71 E-value=0.82 Score=39.55 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=27.2
Q ss_pred cCCCEEEEEEecCCChhhHhhhHHH---HHHHHHHHh
Q 021494 107 LVGKTVGLYFSARWCIPCEKFMPKL---LSIYQKIKQ 140 (311)
Q Consensus 107 ~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~ 140 (311)
..|++.++.|+...||+|..+.+.+ ..+.+.+.+
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 3578889999999999999999866 566666653
No 250
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=85.26 E-value=0.46 Score=37.21 Aligned_cols=30 Identities=10% Similarity=0.356 Sum_probs=24.5
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecCCCCCCceee
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 43 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~~ 43 (311)
|.+....|+.+|+|.++||++++. +|+.+.
T Consensus 53 DvD~~~~la~~~~V~~iPTf~~fk----~G~~v~ 82 (114)
T cd02954 53 DIDEVPDFNKMYELYDPPTVMFFF----RNKHMK 82 (114)
T ss_pred ECCCCHHHHHHcCCCCCCEEEEEE----CCEEEE
Confidence 344568899999999999999998 676653
No 251
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=85.01 E-value=4.3 Score=31.51 Aligned_cols=50 Identities=14% Similarity=0.320 Sum_probs=34.3
Q ss_pred HhhhHHHHHHHHHHH-hhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhCCCCc----cce
Q 021494 125 EKFMPKLLSIYQKIK-QNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG----IPC 199 (311)
Q Consensus 125 ~~~~p~l~~l~~~~~-~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~----~Pt 199 (311)
......+.+++++++ .+ +.+|.+|.+. .....+.||+.. .|.
T Consensus 34 ~~~~~~~~~vAk~fk~gk------------i~Fv~~D~~~---------------------~~~~l~~fgl~~~~~~~P~ 80 (111)
T cd03073 34 NYWRNRVLKVAKDFPDRK------------LNFAVADKED---------------------FSHELEEFGLDFSGGEKPV 80 (111)
T ss_pred HHHHHHHHHHHHHCcCCe------------EEEEEEcHHH---------------------HHHHHHHcCCCcccCCCCE
Confidence 445667777777777 44 5555555543 334778999974 899
Q ss_pred EEEECCCC
Q 021494 200 LVIIGPEG 207 (311)
Q Consensus 200 ~vlid~~G 207 (311)
+.|++.++
T Consensus 81 ~~i~~~~~ 88 (111)
T cd03073 81 VAIRTAKG 88 (111)
T ss_pred EEEEeCCC
Confidence 99998665
No 252
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=84.39 E-value=0.64 Score=34.44 Aligned_cols=29 Identities=7% Similarity=0.434 Sum_probs=23.5
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
|.+....|+++|+|.++|+++++. +|+.+
T Consensus 51 d~~~~~~l~~~~~i~~~Pt~~~~~----~g~~~ 79 (96)
T cd02956 51 NCDAQPQIAQQFGVQALPTVYLFA----AGQPV 79 (96)
T ss_pred eccCCHHHHHHcCCCCCCEEEEEe----CCEEe
Confidence 445567899999999999999997 56553
No 253
>PRK10824 glutaredoxin-4; Provisional
Probab=83.04 E-value=1.6 Score=34.23 Aligned_cols=16 Identities=13% Similarity=0.027 Sum_probs=12.5
Q ss_pred CCChhhHhhhHHHHHH
Q 021494 119 RWCIPCEKFMPKLLSI 134 (311)
Q Consensus 119 ~wC~~C~~~~p~l~~l 134 (311)
+|||+|.+....|.++
T Consensus 28 p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 28 PSCGFSAQAVQALSAC 43 (115)
T ss_pred CCCchHHHHHHHHHHc
Confidence 5999999887766543
No 254
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=82.24 E-value=1.1 Score=33.77 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.4
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecC
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQP 34 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~ 34 (311)
|.+....++++|+|+++|+++++..
T Consensus 58 d~~~~~~~~~~~~i~~~Pt~~~~~~ 82 (104)
T cd03004 58 DCQKYESLCQQANIRAYPTIRLYPG 82 (104)
T ss_pred ECCchHHHHHHcCCCcccEEEEEcC
Confidence 4455788999999999999999984
No 255
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=81.92 E-value=2.2 Score=33.01 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=23.3
Q ss_pred HHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 185 IKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
...+..+||+..+|+++++ ++|+.+..
T Consensus 71 e~~L~~r~gv~~~PaLvf~-R~g~~lG~ 97 (107)
T PF07449_consen 71 ERALAARFGVRRWPALVFF-RDGRYLGA 97 (107)
T ss_dssp HHHHHHHHT-TSSSEEEEE-ETTEEEEE
T ss_pred HHHHHHHhCCccCCeEEEE-ECCEEEEE
Confidence 5689999999999999999 88888866
No 256
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=81.74 E-value=1.8 Score=32.80 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=20.4
Q ss_pred HHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 15 KALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 15 ~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
..++++|+|.++||++++. +|+.+
T Consensus 61 ~~l~~~~~V~~~Pt~~~~~----~G~~v 84 (103)
T cd02985 61 MELCRREKIIEVPHFLFYK----DGEKI 84 (103)
T ss_pred HHHHHHcCCCcCCEEEEEe----CCeEE
Confidence 5899999999999988886 67654
No 257
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=81.62 E-value=0.81 Score=34.87 Aligned_cols=24 Identities=17% Similarity=0.480 Sum_probs=20.9
Q ss_pred CHHHHHHHHhhcccCCCCeeEEec
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQ 33 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~ 33 (311)
|.+.+..|+++|+|+++|+++++.
T Consensus 63 d~d~~~~l~~~~~v~~~Ptl~~~~ 86 (108)
T cd02996 63 DCDKESDIADRYRINKYPTLKLFR 86 (108)
T ss_pred ECCCCHHHHHhCCCCcCCEEEEEe
Confidence 555668899999999999999986
No 258
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=81.19 E-value=13 Score=34.77 Aligned_cols=73 Identities=15% Similarity=0.302 Sum_probs=48.0
Q ss_pred CEEEEEEecCCCh--hhHhhh---HHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchh
Q 021494 110 KTVGLYFSARWCI--PCEKFM---PKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPT 184 (311)
Q Consensus 110 k~vll~F~a~wC~--~C~~~~---p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~ 184 (311)
+.++|+|+.+--. .-+++. ..+-++.++..+. .++.+..|+...+
T Consensus 52 d~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~--------~gigfg~VD~~Kd---------------------- 101 (383)
T PF01216_consen 52 DVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED--------KGIGFGMVDSKKD---------------------- 101 (383)
T ss_dssp SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG--------CTEEEEEEETTTT----------------------
T ss_pred cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc--------cCcceEEeccHHH----------------------
Confidence 5788888876432 222222 3345566665542 4788888877664
Q ss_pred HHHHHHhCCCCccceEEEECCCCcEEEecc
Q 021494 185 IKELTKYFDVQGIPCLVIIGPEGKTVTKQG 214 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~~G~iv~~~g 214 (311)
..+++++|+...++++++ ++|++|..+|
T Consensus 102 -~klAKKLgv~E~~SiyVf-kd~~~IEydG 129 (383)
T PF01216_consen 102 -AKLAKKLGVEEEGSIYVF-KDGEVIEYDG 129 (383)
T ss_dssp -HHHHHHHT--STTEEEEE-ETTEEEEE-S
T ss_pred -HHHHHhcCccccCcEEEE-ECCcEEEecC
Confidence 489999999999999999 8999998876
No 259
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=80.38 E-value=1 Score=33.40 Aligned_cols=24 Identities=21% Similarity=0.660 Sum_probs=20.5
Q ss_pred CHHHHHHHHhhcccCCCCeeEEec
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQ 33 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~ 33 (311)
|.+....|+++|+|.++|+++++.
T Consensus 56 d~~~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 56 DCDENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp ETTTSHHHHHHTTCSSSSEEEEEE
T ss_pred hhhccchhhhccCCCCCCEEEEEE
Confidence 334567899999999999999998
No 260
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=79.74 E-value=1.2 Score=33.45 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.3
Q ss_pred CHHHHHHHHhhcccCCCCeeEEec
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQ 33 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~ 33 (311)
|.+....++++|+|+++||++++.
T Consensus 57 d~~~~~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 57 NCGDDRMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred eCCccHHHHHHcCCCccCEEEEEc
Confidence 344567899999999999999986
No 261
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=79.67 E-value=1.7 Score=32.13 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=21.4
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecC
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQP 34 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~ 34 (311)
|.+....++++|+|.++|+++++..
T Consensus 54 d~~~~~~~~~~~~i~~~P~~~~~~~ 78 (102)
T TIGR01126 54 DATAEKDLASRFGVSGFPTIKFFPK 78 (102)
T ss_pred EccchHHHHHhCCCCcCCEEEEecC
Confidence 4455788999999999999999985
No 262
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=79.47 E-value=0.5 Score=39.02 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=11.2
Q ss_pred CCcceeEeCCCCC
Q 021494 280 QGSGWAYQCLECG 292 (311)
Q Consensus 280 ~g~~w~~~C~~c~ 292 (311)
.-++|+.||++|.
T Consensus 54 lvnFWAsWCppCr 66 (153)
T TIGR02738 54 LVFFYQSTCPYCH 66 (153)
T ss_pred EEEEECCCChhHH
Confidence 4479999999996
No 263
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=79.27 E-value=1.6 Score=31.78 Aligned_cols=24 Identities=13% Similarity=0.404 Sum_probs=20.9
Q ss_pred HHHHHHHHhhcccCCCCeeEEecC
Q 021494 11 LETKKALNRKFDIEGIPCLVVLQP 34 (311)
Q Consensus 11 ~~~~~~l~~~~~i~~~P~l~~~~~ 34 (311)
.+.+..++++|+|+++|+++++.+
T Consensus 57 ~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 57 CTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred ccchHHHHHhCCCCCCCEEEEEcC
Confidence 344689999999999999999985
No 264
>PHA02278 thioredoxin-like protein
Probab=78.47 E-value=2 Score=32.86 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.0
Q ss_pred HHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 15 KALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 15 ~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
..|+++|+|.++||++++. +|+.+
T Consensus 62 ~~l~~~~~I~~iPT~i~fk----~G~~v 85 (103)
T PHA02278 62 EKAVKLFDIMSTPVLIGYK----DGQLV 85 (103)
T ss_pred HHHHHHCCCccccEEEEEE----CCEEE
Confidence 5799999999999999998 67665
No 265
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=77.47 E-value=1.8 Score=31.91 Aligned_cols=29 Identities=21% Similarity=0.495 Sum_probs=23.4
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
|.+....++++|+|.++|+++++. +|+.+
T Consensus 53 d~~~~~~~~~~~~i~~~Pt~~~~~----~g~~~ 81 (97)
T cd02984 53 EAEELPEISEKFEITAVPTFVFFR----NGTIV 81 (97)
T ss_pred ccccCHHHHHhcCCccccEEEEEE----CCEEE
Confidence 444567899999999999999997 67665
No 266
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=77.01 E-value=2 Score=33.05 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=23.0
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
|.+....++.+|+|.++|+++++. +|+..
T Consensus 64 d~d~~~~l~~~~~V~~~Pt~~i~~----~g~~~ 92 (111)
T cd02963 64 NAGHERRLARKLGAHSVPAIVGII----NGQVT 92 (111)
T ss_pred eccccHHHHHHcCCccCCEEEEEE----CCEEE
Confidence 444567899999999999999987 56554
No 267
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=76.87 E-value=10 Score=32.70 Aligned_cols=33 Identities=21% Similarity=0.104 Sum_probs=29.7
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHh
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQ 140 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~ 140 (311)
+|-+|+|..|...=|-|.-....|+.++-+|..
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~ 142 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ 142 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc
Confidence 467999999999999999999999999998874
No 268
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=76.83 E-value=1.6 Score=33.81 Aligned_cols=29 Identities=17% Similarity=0.403 Sum_probs=23.9
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
|.+....|+++|+|.++||++++. +|+.+
T Consensus 60 d~~~~~~l~~~~~v~~vPt~l~fk----~G~~v 88 (113)
T cd02989 60 NAEKAPFLVEKLNIKVLPTVILFK----NGKTV 88 (113)
T ss_pred EcccCHHHHHHCCCccCCEEEEEE----CCEEE
Confidence 444567899999999999999998 67665
No 269
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=76.57 E-value=61 Score=31.60 Aligned_cols=106 Identities=13% Similarity=0.116 Sum_probs=63.3
Q ss_pred CCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHH-----------
Q 021494 96 HPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQT----------- 164 (311)
Q Consensus 96 ~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~----------- 164 (311)
.+++ .+++++++|..-+|....+- .++...+...+...+++.++ +|.||-|..+.+.+
T Consensus 284 ~~~~-~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r---------~VlvVPv~~~~~~~~~~~~~gfg~~ 352 (453)
T PLN03098 284 STNR-IVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKR---------GVLLIPVVWGENKDPQPKKKGFGRS 352 (453)
T ss_pred cCCC-EEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHc---------CcEEEEEecCCCCcccccccccccc
Confidence 3567 99999999965444444432 45666666666666777765 78888888763311
Q ss_pred ------------HHHH---------HH-hcCCCcccccCchhHHH-HH---HhCCCC-ccceEEEECCCCcEEEe
Q 021494 165 ------------SFES---------YF-GTMPWLALPFGDPTIKE-LT---KYFDVQ-GIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 165 ------------~~~~---------~~-~~~~~~~~p~~~d~~~~-l~---~~~~v~-~~Pt~vlid~~G~iv~~ 212 (311)
++.+ -. .+..|...|+..+.-.. +. +.=||. +-|.++.+-.||+|...
T Consensus 353 s~~a~~~p~~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~wi~~q~~~~gv~~~~~vyi~lr~dGrVr~S 427 (453)
T PLN03098 353 SKAAASLPSIGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTPGEDVYIILRLDGRVRRS 427 (453)
T ss_pred chhhhcCCCccchhhhhhHHHHHHHhhhcccceEEeecchHHHHHHHHHHHHhcCCCCCCceEEEEeeCCeEecC
Confidence 1111 11 13458888876542221 11 122332 23778888899999877
No 270
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=76.51 E-value=2.5 Score=34.20 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=22.0
Q ss_pred HHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 15 KALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 15 ~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
..+.++|+|.++|++++++. +|+++
T Consensus 66 ~~~~~~~~V~~iPt~v~~~~---~G~~v 90 (142)
T cd02950 66 LPEIDRYRVDGIPHFVFLDR---EGNEE 90 (142)
T ss_pred HHHHHHcCCCCCCEEEEECC---CCCEE
Confidence 57899999999999999986 78775
No 271
>PTZ00051 thioredoxin; Provisional
Probab=76.33 E-value=1.7 Score=32.13 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=23.0
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
|.+....++++|+|.++|+++++. +|+.+
T Consensus 56 d~~~~~~~~~~~~v~~~Pt~~~~~----~g~~~ 84 (98)
T PTZ00051 56 DVDELSEVAEKENITSMPTFKVFK----NGSVV 84 (98)
T ss_pred ECcchHHHHHHCCCceeeEEEEEe----CCeEE
Confidence 334567899999999999998886 67664
No 272
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=76.28 E-value=1.8 Score=32.32 Aligned_cols=27 Identities=11% Similarity=0.257 Sum_probs=21.5
Q ss_pred HHHHHHHHhhcccCCCCeeEEecCCCCCCce
Q 021494 11 LETKKALNRKFDIEGIPCLVVLQPYDDKDDA 41 (311)
Q Consensus 11 ~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~ 41 (311)
.+....++++|+|.++|+++++. +|.+
T Consensus 57 ~~~~~~~~~~~~i~~~Pt~~~~~----~g~~ 83 (101)
T cd02994 57 VTQEPGLSGRFFVTALPTIYHAK----DGVF 83 (101)
T ss_pred ccCCHhHHHHcCCcccCEEEEeC----CCCE
Confidence 34456799999999999999875 5654
No 273
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=76.10 E-value=12 Score=28.95 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=34.2
Q ss_pred HhhhHHHHHHHHH---HHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhCCCCc--cce
Q 021494 125 EKFMPKLLSIYQK---IKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQG--IPC 199 (311)
Q Consensus 125 ~~~~p~l~~l~~~---~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~--~Pt 199 (311)
......+.+++++ ++.+ +.+|.+|.+. .....+.||+.. +|.
T Consensus 30 ~~~~~~~~~vAk~~~~~kgk------------i~Fv~~d~~~---------------------~~~~~~~fgl~~~~~P~ 76 (111)
T cd03072 30 ESLKEFKQAVARQLISEKGA------------INFLTADGDK---------------------FRHPLLHLGKTPADLPV 76 (111)
T ss_pred HHHHHHHHHHHHHHHhcCce------------EEEEEEechH---------------------hhhHHHHcCCCHhHCCE
Confidence 4566677788888 6643 4555555443 334788999986 899
Q ss_pred EEEECCCC
Q 021494 200 LVIIGPEG 207 (311)
Q Consensus 200 ~vlid~~G 207 (311)
+.+++-++
T Consensus 77 i~i~~~~~ 84 (111)
T cd03072 77 IAIDSFRH 84 (111)
T ss_pred EEEEcchh
Confidence 99997644
No 274
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=76.05 E-value=3 Score=32.58 Aligned_cols=26 Identities=27% Similarity=0.569 Sum_probs=22.4
Q ss_pred HHHHHhhcccCCCCeeEEecCCCCC-Ccee
Q 021494 14 KKALNRKFDIEGIPCLVVLQPYDDK-DDAT 42 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l~~~~~~~~~-g~~~ 42 (311)
...|+.+|+|.++|+++++++ + |+.+
T Consensus 73 ~~~l~~~~~v~~~Pt~~~~~~---~gg~~~ 99 (125)
T cd02951 73 EKELARKYRVRFTPTVIFLDP---EGGKEI 99 (125)
T ss_pred HHHHHHHcCCccccEEEEEcC---CCCcee
Confidence 478999999999999999997 6 6664
No 275
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=75.77 E-value=2.3 Score=31.59 Aligned_cols=25 Identities=20% Similarity=0.604 Sum_probs=21.3
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecC
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQP 34 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~ 34 (311)
|.+.+..++++|+|+++|+++++..
T Consensus 57 d~~~~~~~~~~~~i~~~P~~~~~~~ 81 (103)
T cd03001 57 DADVHQSLAQQYGVRGFPTIKVFGA 81 (103)
T ss_pred ECcchHHHHHHCCCCccCEEEEECC
Confidence 4456788999999999999999984
No 276
>PRK10996 thioredoxin 2; Provisional
Probab=74.94 E-value=1.9 Score=34.72 Aligned_cols=29 Identities=21% Similarity=0.592 Sum_probs=23.5
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
|.+...+++++|+|.++|+++++. +|+.+
T Consensus 91 d~~~~~~l~~~~~V~~~Ptlii~~----~G~~v 119 (139)
T PRK10996 91 NTEAERELSARFRIRSIPTIMIFK----NGQVV 119 (139)
T ss_pred eCCCCHHHHHhcCCCccCEEEEEE----CCEEE
Confidence 344567899999999999999886 67765
No 277
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.92 E-value=3.1 Score=34.36 Aligned_cols=26 Identities=23% Similarity=0.503 Sum_probs=23.2
Q ss_pred HHHHhhcccCCCCeeEEecCCCCCCceee
Q 021494 15 KALNRKFDIEGIPCLVVLQPYDDKDDATL 43 (311)
Q Consensus 15 ~~l~~~~~i~~~P~l~~~~~~~~~g~~~~ 43 (311)
+.|++.|+|++.|++++++. +|+.+.
T Consensus 105 ~ELa~kf~vrstPtfvFfdk---~Gk~Il 130 (182)
T COG2143 105 EELAQKFAVRSTPTFVFFDK---TGKTIL 130 (182)
T ss_pred HHHHHHhccccCceEEEEcC---CCCEEE
Confidence 58999999999999999997 888763
No 278
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=74.84 E-value=1.8 Score=32.65 Aligned_cols=22 Identities=18% Similarity=0.564 Sum_probs=19.5
Q ss_pred HHHHHHhhcccCCCCeeEEecC
Q 021494 13 TKKALNRKFDIEGIPCLVVLQP 34 (311)
Q Consensus 13 ~~~~l~~~~~i~~~P~l~~~~~ 34 (311)
....++++|+|+++||++++..
T Consensus 60 ~~~~l~~~~~V~~~PT~~lf~~ 81 (100)
T cd02999 60 IKPSLLSRYGVVGFPTILLFNS 81 (100)
T ss_pred CCHHHHHhcCCeecCEEEEEcC
Confidence 4578999999999999999984
No 279
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=74.56 E-value=2.8 Score=32.30 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=22.2
Q ss_pred HHHHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 11 LETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 11 ~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
.+.. .|+++|+|.++|+++++. +|+.+
T Consensus 63 ~~~~-~l~~~~~i~~~Pt~~~f~----~G~~v 89 (113)
T cd02957 63 AEKA-FLVNYLDIKVLPTLLVYK----NGELI 89 (113)
T ss_pred chhh-HHHHhcCCCcCCEEEEEE----CCEEE
Confidence 3344 899999999999999998 67665
No 280
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=74.45 E-value=12 Score=26.75 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=46.8
Q ss_pred EEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHH
Q 021494 111 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTK 190 (311)
Q Consensus 111 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~ 190 (311)
++|..|-+...+...+....+.++.+++... .+++=.|.+-. ..++++
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~---------~~~LeVIDv~~-----------------------~P~lAe 49 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLGG---------PYELEVIDVLK-----------------------QPQLAE 49 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcCC---------cEEEEEEEccc-----------------------CHhHHh
Confidence 4667777888888999999999998887632 45555555444 448899
Q ss_pred hCCCCccceEEEECC
Q 021494 191 YFDVQGIPCLVIIGP 205 (311)
Q Consensus 191 ~~~v~~~Pt~vlid~ 205 (311)
.++|.++||++=..|
T Consensus 50 ~~~ivAtPtLvk~~P 64 (72)
T cd02978 50 EDKIVATPTLVKVLP 64 (72)
T ss_pred hCCEEEechhhhcCC
Confidence 999999999775543
No 281
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=74.33 E-value=1.2 Score=45.24 Aligned_cols=33 Identities=24% Similarity=0.553 Sum_probs=28.5
Q ss_pred CCcccccccCCC-cceeEeCCCC-CCCcccccccc
Q 021494 270 GPFICCDCDEQG-SGWAYQCLEC-GYEVHPKCVRA 302 (311)
Q Consensus 270 ~~~~Cd~C~~~g-~~w~~~C~~c-~~~~h~~c~~~ 302 (311)
..-.|.+|++.- -|..|+|--| ||||++.|-..
T Consensus 602 H~~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~s 636 (966)
T KOG4286|consen 602 HQAKCNICKECPIIGFRYRSLKHFNYDICQSCFFS 636 (966)
T ss_pred hhhhcchhhhCccceeeeeehhhcChhHHhhHhhh
Confidence 356799999965 4999999999 89999999765
No 282
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=73.20 E-value=1.2 Score=30.19 Aligned_cols=28 Identities=36% Similarity=0.901 Sum_probs=22.1
Q ss_pred CCCcccccccCCCc---ceeEeCCCCCCCcc
Q 021494 269 GGPFICCDCDEQGS---GWAYQCLECGYEVH 296 (311)
Q Consensus 269 ~~~~~Cd~C~~~g~---~w~~~C~~c~~~~h 296 (311)
.-.++|+.|+..-. +=+.+|.+|+|.+-
T Consensus 18 ~miYiCgdC~~en~lk~~D~irCReCG~RIl 48 (62)
T KOG3507|consen 18 TMIYICGDCGQENTLKRGDVIRCRECGYRIL 48 (62)
T ss_pred cEEEEeccccccccccCCCcEehhhcchHHH
Confidence 34689999998554 66899999999763
No 283
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=72.59 E-value=14 Score=30.54 Aligned_cols=102 Identities=22% Similarity=0.309 Sum_probs=60.1
Q ss_pred eeecccc-CCCEEEEE-EecCCChh-hHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCC--HHHHHHHHhcCCC
Q 021494 101 KVPVSSL-VGKTVGLY-FSARWCIP-CEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD--QTSFESYFGTMPW 175 (311)
Q Consensus 101 ~v~l~~~-~gk~vll~-F~a~wC~~-C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~--~~~~~~~~~~~~~ 175 (311)
+++++++ +||-++|+ .-+...|. |+...|-+.+-.++++.+ .-=+|+.||+|+. .+.|.+.+....
T Consensus 34 tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksK--------GVd~iicvSVnDpFv~~aW~k~~g~~~- 104 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSK--------GVDEIICVSVNDPFVMKAWAKSLGAND- 104 (171)
T ss_pred eEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhc--------CCcEEEEEecCcHHHHHHHHhhcCccc-
Confidence 5777775 67555442 23445566 678899999999999876 1235788888874 356666554332
Q ss_pred cccccCchhHHHHHHhCC-----------CCccceEEEECCCCcEEEec
Q 021494 176 LALPFGDPTIKELTKYFD-----------VQGIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 176 ~~~p~~~d~~~~l~~~~~-----------v~~~Pt~vlid~~G~iv~~~ 213 (311)
.+-+..|...+..+.+| +++-....++ .+|++...+
T Consensus 105 -~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~n 151 (171)
T KOG0541|consen 105 -HVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVN 151 (171)
T ss_pred -eEEEEecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEE
Confidence 22223333333333333 3333444555 788888764
No 284
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=72.27 E-value=4.6 Score=30.27 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=21.3
Q ss_pred HHHHHhhcccCCCCeeEEecCCCCCCce
Q 021494 14 KKALNRKFDIEGIPCLVVLQPYDDKDDA 41 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l~~~~~~~~~g~~ 41 (311)
...++++|+|.++|+++++++ .+|+.
T Consensus 61 ~~~~~~~~~i~~~Pti~~~~~--~~g~~ 86 (104)
T cd02953 61 ITALLKRFGVFGPPTYLFYGP--GGEPE 86 (104)
T ss_pred HHHHHHHcCCCCCCEEEEECC--CCCCC
Confidence 578999999999999999984 24554
No 285
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=72.01 E-value=1.9 Score=33.64 Aligned_cols=24 Identities=4% Similarity=-0.076 Sum_probs=19.3
Q ss_pred CHHHHHHHH-hhcccCCCCeeEEec
Q 021494 10 DLETKKALN-RKFDIEGIPCLVVLQ 33 (311)
Q Consensus 10 d~~~~~~l~-~~~~i~~~P~l~~~~ 33 (311)
|.+.+..++ ++|+|+++||++++.
T Consensus 68 d~d~~~~l~~~~~~I~~~PTl~lf~ 92 (113)
T cd03006 68 NCWWPQGKCRKQKHFFYFPVIHLYY 92 (113)
T ss_pred ECCCChHHHHHhcCCcccCEEEEEE
Confidence 344556788 589999999999986
No 286
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=71.89 E-value=40 Score=32.44 Aligned_cols=28 Identities=14% Similarity=0.407 Sum_probs=25.0
Q ss_pred HHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 185 IKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
...++..|.+..+|+.++||..|..+..
T Consensus 66 a~qFs~IYp~v~vPs~ffIg~sGtpLev 93 (506)
T KOG2507|consen 66 ATQFSAIYPYVSVPSIFFIGFSGTPLEV 93 (506)
T ss_pred hhhhhhhcccccccceeeecCCCceeEE
Confidence 4577888999999999999999999887
No 287
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=70.23 E-value=3.2 Score=31.29 Aligned_cols=25 Identities=4% Similarity=0.142 Sum_probs=20.9
Q ss_pred HHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 14 KKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
...++++|+|+++|+++++. +|+.+
T Consensus 60 ~~~~~~~~~v~~~Pt~~~~~----~g~~~ 84 (102)
T cd02948 60 TIDTLKRYRGKCEPTFLFYK----NGELV 84 (102)
T ss_pred CHHHHHHcCCCcCcEEEEEE----CCEEE
Confidence 45789999999999999987 67654
No 288
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=70.07 E-value=2.9 Score=31.08 Aligned_cols=24 Identities=17% Similarity=0.531 Sum_probs=20.3
Q ss_pred HHHHHhhcccCCCCeeEEecCCCCCCce
Q 021494 14 KKALNRKFDIEGIPCLVVLQPYDDKDDA 41 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l~~~~~~~~~g~~ 41 (311)
...++++|+|+++|+++++. +|+.
T Consensus 64 ~~~~~~~~~i~~~Pt~~~~~----~g~~ 87 (104)
T cd02997 64 HDALKEEYNVKGFPTFKYFE----NGKF 87 (104)
T ss_pred cHHHHHhCCCccccEEEEEe----CCCe
Confidence 57899999999999999887 4654
No 289
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.99 E-value=2 Score=35.16 Aligned_cols=29 Identities=17% Similarity=0.541 Sum_probs=24.3
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
|.+++..|+.+|+|+.+||++++. +|+..
T Consensus 100 dtD~~~ela~~Y~I~avPtvlvfk----nGe~~ 128 (150)
T KOG0910|consen 100 DTDEHPELAEDYEISAVPTVLVFK----NGEKV 128 (150)
T ss_pred ccccccchHhhcceeeeeEEEEEE----CCEEe
Confidence 445678999999999999999998 67664
No 290
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=69.37 E-value=3 Score=30.54 Aligned_cols=28 Identities=18% Similarity=0.539 Sum_probs=22.5
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecCCCCCCce
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDA 41 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~ 41 (311)
|.+.+..+.++|+|.++|+++++. +|..
T Consensus 53 d~~~~~~~~~~~~v~~~P~~~~~~----~g~~ 80 (101)
T TIGR01068 53 NVDENPDIAAKYGIRSIPTLLLFK----NGKE 80 (101)
T ss_pred ECCCCHHHHHHcCCCcCCEEEEEe----CCcE
Confidence 444567899999999999999996 5654
No 291
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=69.32 E-value=1.8 Score=39.98 Aligned_cols=38 Identities=24% Similarity=0.626 Sum_probs=31.9
Q ss_pred CCCCCcccccccC-CCcceeEeCCCC-CCCcccccccccc
Q 021494 267 TGGGPFICCDCDE-QGSGWAYQCLEC-GYEVHPKCVRAVD 304 (311)
Q Consensus 267 ~~~~~~~Cd~C~~-~g~~w~~~C~~c-~~~~h~~c~~~~~ 304 (311)
.+..+..|..|+- ...++.|+|-.| +|-+++.|-.--.
T Consensus 236 nv~hpv~cs~c~srs~~gfry~cq~C~nyqlcq~cfwrG~ 275 (434)
T KOG4301|consen 236 NVFHPVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWRGH 275 (434)
T ss_pred ccCCCccCcceecccccchhhhHhhcCCccccchhhcccc
Confidence 4567889999997 446999999999 7999999987633
No 292
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=69.19 E-value=3.7 Score=36.12 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=24.0
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
|.+.+..++++|+|+++|+++++. +|+.+
T Consensus 91 D~~~~~~l~~~~~I~~~PTl~~f~----~G~~v 119 (224)
T PTZ00443 91 DATRALNLAKRFAIKGYPTLLLFD----KGKMY 119 (224)
T ss_pred cCcccHHHHHHcCCCcCCEEEEEE----CCEEE
Confidence 556678899999999999999998 56554
No 293
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=69.08 E-value=2.5 Score=31.44 Aligned_cols=28 Identities=11% Similarity=0.349 Sum_probs=22.8
Q ss_pred HHHHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 11 LETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 11 ~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
.+.+.++..+|+|.++|+++++. +|+++
T Consensus 53 ~d~~~~l~~~~~v~~vPt~~i~~----~g~~v 80 (97)
T cd02949 53 IDEDQEIAEAAGIMGTPTVQFFK----DKELV 80 (97)
T ss_pred CCCCHHHHHHCCCeeccEEEEEE----CCeEE
Confidence 34567899999999999999997 56664
No 294
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=68.98 E-value=16 Score=37.96 Aligned_cols=70 Identities=20% Similarity=0.207 Sum_probs=42.8
Q ss_pred CeEEEEEecCCCHHHHHHHHhc-CCCcccccCchhHHHHHHhCCCCccceEEEECCCCcEEEeccchhhhcccccCCCCc
Q 021494 151 DFEVVFVSTDRDQTSFESYFGT-MPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFT 229 (311)
Q Consensus 151 ~~~vv~Vs~d~~~~~~~~~~~~-~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~~g~~~~~~~g~~~~p~~ 229 (311)
+..||..|.-.+-+.+...... +. .-.+..+++-...|...+||-.+.....+ ..++
T Consensus 349 ~~pvvLgSATPSLES~~~~~~g~y~----------~~~L~~R~~~a~~p~v~iiDmr~e~~~~~------------~~lS 406 (730)
T COG1198 349 NAPVVLGSATPSLESYANAESGKYK----------LLRLTNRAGRARLPRVEIIDMRKEPLETG------------RSLS 406 (730)
T ss_pred CCCEEEecCCCCHHHHHhhhcCceE----------EEEccccccccCCCcceEEeccccccccC------------ccCC
Confidence 5678888887777666665332 11 22566777733388999998766554331 1266
Q ss_pred HHHHHHHHHHHHH
Q 021494 230 EAKLEFLEKQMEE 242 (311)
Q Consensus 230 ~~~i~~L~~~~~~ 242 (311)
+..++++.+.++.
T Consensus 407 ~~Ll~~i~~~l~~ 419 (730)
T COG1198 407 PALLEAIRKTLER 419 (730)
T ss_pred HHHHHHHHHHHhc
Confidence 7666666665544
No 295
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=68.66 E-value=3.1 Score=30.83 Aligned_cols=24 Identities=25% Similarity=0.627 Sum_probs=19.9
Q ss_pred CHHHHHHHHhhcccCCCCeeEEec
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQ 33 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~ 33 (311)
|.+.+..++++|+|+++|+++++.
T Consensus 58 d~~~~~~~~~~~~v~~~Pt~~~~~ 81 (102)
T cd03005 58 DCTQHRELCSEFQVRGYPTLLLFK 81 (102)
T ss_pred ECCCChhhHhhcCCCcCCEEEEEe
Confidence 344456899999999999999996
No 296
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=68.59 E-value=4.7 Score=25.91 Aligned_cols=22 Identities=27% Similarity=0.771 Sum_probs=17.2
Q ss_pred cccccccCCCc-----ceeEeCCCCCC
Q 021494 272 FICCDCDEQGS-----GWAYQCLECGY 293 (311)
Q Consensus 272 ~~Cd~C~~~g~-----~w~~~C~~c~~ 293 (311)
++|+.|+-... .-.|+|..|++
T Consensus 19 ~~CP~Cg~~~~~~~~~~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGSTKHYRLKTRGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCeeeEEeCCCCeEECCCCCC
Confidence 78999997532 46889999975
No 297
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=68.49 E-value=3.3 Score=31.23 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=20.1
Q ss_pred CHHHHHHHHhhcccCCCCeeEEec
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQ 33 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~ 33 (311)
|.+....++++|+|.++|+++++.
T Consensus 57 d~~~~~~~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 57 DATAYSSIASEFGVRGYPTIKLLK 80 (104)
T ss_pred ECccCHhHHhhcCCccccEEEEEc
Confidence 344457899999999999999996
No 298
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=68.28 E-value=3.4 Score=34.06 Aligned_cols=29 Identities=14% Similarity=0.371 Sum_probs=23.0
Q ss_pred HHHHHHHHhhcccCC------CCeeEEecCCCCCCceee
Q 021494 11 LETKKALNRKFDIEG------IPCLVVLQPYDDKDDATL 43 (311)
Q Consensus 11 ~~~~~~l~~~~~i~~------~P~l~~~~~~~~~g~~~~ 43 (311)
.+....++++|+|.+ +||++++. +|+.+.
T Consensus 88 vd~~~~la~~~~V~~~~~v~~~PT~ilf~----~Gk~v~ 122 (152)
T cd02962 88 IGRFPNVAEKFRVSTSPLSKQLPTIILFQ----GGKEVA 122 (152)
T ss_pred CCCCHHHHHHcCceecCCcCCCCEEEEEE----CCEEEE
Confidence 345678999999988 99999998 676653
No 299
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=68.15 E-value=25 Score=28.82 Aligned_cols=13 Identities=15% Similarity=0.087 Sum_probs=10.1
Q ss_pred CChhhHhhhHHHH
Q 021494 120 WCIPCEKFMPKLL 132 (311)
Q Consensus 120 wC~~C~~~~p~l~ 132 (311)
+|+.|.+....|+
T Consensus 15 t~~~C~~ak~iL~ 27 (147)
T cd03031 15 TFEDCNNVRAILE 27 (147)
T ss_pred cChhHHHHHHHHH
Confidence 8999987766554
No 300
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=68.03 E-value=4.3 Score=26.16 Aligned_cols=31 Identities=23% Similarity=0.696 Sum_probs=26.7
Q ss_pred cccccccCCCcceeEeCCCC-CCCcccccccc
Q 021494 272 FICCDCDEQGSGWAYQCLEC-GYEVHPKCVRA 302 (311)
Q Consensus 272 ~~Cd~C~~~g~~w~~~C~~c-~~~~h~~c~~~ 302 (311)
+.|+.|+..-..-.|.|..+ +|||.+.|-.+
T Consensus 1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~ 32 (45)
T cd02336 1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQE 32 (45)
T ss_pred CcccCCCCccCceEEEecCCCccccChHHHhC
Confidence 46888998888889999999 59999999876
No 301
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=67.39 E-value=5.7 Score=31.51 Aligned_cols=23 Identities=22% Similarity=0.184 Sum_probs=19.6
Q ss_pred hcccCCCCeeEEecCCCCCCceeech
Q 021494 20 KFDIEGIPCLVVLQPYDDKDDATLHD 45 (311)
Q Consensus 20 ~~~i~~~P~l~~~~~~~~~g~~~~~~ 45 (311)
.|++.|+|+++++++ +|+.+...
T Consensus 75 ~~~~~G~Pt~vfl~~---~G~~~~~~ 97 (124)
T cd02955 75 MTGQGGWPLNVFLTP---DLKPFFGG 97 (124)
T ss_pred hcCCCCCCEEEEECC---CCCEEeee
Confidence 579999999999998 89887544
No 302
>PHA03075 glutaredoxin-like protein; Provisional
Probab=67.21 E-value=7.5 Score=30.38 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=25.8
Q ss_pred CEEEEEEecCCChhhHhhhHHHHHHHHHHH
Q 021494 110 KTVGLYFSARWCIPCEKFMPKLLSIYQKIK 139 (311)
Q Consensus 110 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~ 139 (311)
|.++|.|.-|-|+.|......|.++.++|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999888877777765
No 303
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=67.17 E-value=3.8 Score=30.83 Aligned_cols=21 Identities=38% Similarity=0.797 Sum_probs=19.3
Q ss_pred HHHHHhhcccCCCCeeEEecC
Q 021494 14 KKALNRKFDIEGIPCLVVLQP 34 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l~~~~~ 34 (311)
+..++++|+|+++|+++++..
T Consensus 63 ~~~~~~~~~i~~~Pt~~~~~~ 83 (109)
T cd03002 63 NKPLCGKYGVQGFPTLKVFRP 83 (109)
T ss_pred cHHHHHHcCCCcCCEEEEEeC
Confidence 678999999999999999985
No 304
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=66.42 E-value=4 Score=37.29 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=20.5
Q ss_pred CHHHHHHHHhhcccCCCCeeEEec
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQ 33 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~ 33 (311)
|+++-..++..|+|+|+||+.++.
T Consensus 85 DaT~f~aiAnefgiqGYPTIk~~k 108 (468)
T KOG4277|consen 85 DATRFPAIANEFGIQGYPTIKFFK 108 (468)
T ss_pred ccccchhhHhhhccCCCceEEEec
Confidence 455557899999999999999987
No 305
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.39 E-value=24 Score=34.94 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=26.4
Q ss_pred CeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhCCCCccceEEEECC
Q 021494 151 DFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGP 205 (311)
Q Consensus 151 ~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~ 205 (311)
+..+|..|.-.+.+.+...... ++. .-.+.+.++-...|.+-++|-
T Consensus 129 ~~~vil~SATPsles~~~~~~g--~~~-------~~~l~~r~~~~~~p~v~vid~ 174 (505)
T TIGR00595 129 NCPVVLGSATPSLESYHNAKQK--AYR-------LLVLTRRVSGRKPPEVKLIDM 174 (505)
T ss_pred CCCEEEEeCCCCHHHHHHHhcC--CeE-------EeechhhhcCCCCCeEEEEec
Confidence 5678888877776655554331 111 113344455566788888864
No 306
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=65.25 E-value=6.1 Score=30.56 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=19.4
Q ss_pred HHHHHHhhcccCCCCeeEEecC
Q 021494 13 TKKALNRKFDIEGIPCLVVLQP 34 (311)
Q Consensus 13 ~~~~l~~~~~i~~~P~l~~~~~ 34 (311)
....++++|+|+++|+++++..
T Consensus 66 ~~~~~~~~~~i~~~Pt~~lf~~ 87 (114)
T cd02992 66 ENVALCRDFGVTGYPTLRYFPP 87 (114)
T ss_pred hhHHHHHhCCCCCCCEEEEECC
Confidence 4567999999999999999984
No 307
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=64.43 E-value=66 Score=25.50 Aligned_cols=61 Identities=13% Similarity=0.224 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHHHhCCCCccceEEEECCC
Q 021494 127 FMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPE 206 (311)
Q Consensus 127 ~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~ 206 (311)
.+-.+....+.++++ +++|.-.++..++..|.+.-. -.++.+.-|...+|-+++ |
T Consensus 25 eL~~~a~~~~~Lk~~---------gv~v~RyNL~~~P~aF~~n~~-------------V~~~L~~~G~e~LPitlV---d 79 (123)
T PF06953_consen 25 ELVRFAADLDWLKEQ---------GVEVERYNLAQNPQAFVENPE-------------VNQLLQTEGAEALPITLV---D 79 (123)
T ss_dssp HHHHHHHHHHHHHHT---------T-EEEEEETTT-TTHHHHSHH-------------HHHHHHHH-GGG-SEEEE---T
T ss_pred HHHHHHHHHHHHHhC---------CceEEEEccccCHHHHHhCHH-------------HHHHHHHcCcccCCEEEE---C
Confidence 444566667777765 899999999888877666443 456677778999998664 6
Q ss_pred CcEEEe
Q 021494 207 GKTVTK 212 (311)
Q Consensus 207 G~iv~~ 212 (311)
|+|+..
T Consensus 80 Geiv~~ 85 (123)
T PF06953_consen 80 GEIVKT 85 (123)
T ss_dssp TEEEEE
T ss_pred CEEEEe
Confidence 888877
No 308
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=64.19 E-value=18 Score=24.97 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=13.2
Q ss_pred EEecCCChhhHhhhHHHH
Q 021494 115 YFSARWCIPCEKFMPKLL 132 (311)
Q Consensus 115 ~F~a~wC~~C~~~~p~l~ 132 (311)
.|+..||+.|.+..-.|.
T Consensus 3 ly~~~~~p~~~rv~~~L~ 20 (71)
T cd03060 3 LYSFRRCPYAMRARMALL 20 (71)
T ss_pred EEecCCCcHHHHHHHHHH
Confidence 467889999987765443
No 309
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=63.91 E-value=5.8 Score=39.40 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=24.4
Q ss_pred HHHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 12 ETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 12 ~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
+...++.+.|+|+++|+++++++ +|+++
T Consensus 126 D~~~~lak~fgV~giPTt~IIDk---dGkIV 153 (521)
T PRK14018 126 DNGGTLAQSLNISVYPSWAIIGK---DGDVQ 153 (521)
T ss_pred cccHHHHHHcCCCCcCeEEEEcC---CCeEE
Confidence 44678999999999999999997 88775
No 310
>PRK09301 circadian clock protein KaiB; Provisional
Probab=63.02 E-value=26 Score=26.81 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=49.4
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKE 187 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~ 187 (311)
++.++|=.|.|...+..++.+..+.++.+++... .+++=.|.+-. ..+
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g---------~y~LeVIDv~~-----------------------qPe 51 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKG---------VYALKVIDVLK-----------------------NPQ 51 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC---------ceEEEEEEccc-----------------------CHh
Confidence 4567777788888889999999999998876542 35554554443 458
Q ss_pred HHHhCCCCccceEEEECC
Q 021494 188 LTKYFDVQGIPCLVIIGP 205 (311)
Q Consensus 188 l~~~~~v~~~Pt~vlid~ 205 (311)
+++.++|.++||++=+-|
T Consensus 52 lAE~~~IvATPTLIK~~P 69 (103)
T PRK09301 52 LAEEDKILATPTLAKILP 69 (103)
T ss_pred HHhHCCeEEecHHhhcCC
Confidence 999999999999877654
No 311
>PHA00626 hypothetical protein
Probab=62.43 E-value=5.9 Score=26.65 Aligned_cols=16 Identities=31% Similarity=0.781 Sum_probs=12.2
Q ss_pred ceeEeCCCCCCCcccc
Q 021494 283 GWAYQCLECGYEVHPK 298 (311)
Q Consensus 283 ~w~~~C~~c~~~~h~~ 298 (311)
.-.|-|+.|+|-+-.+
T Consensus 21 snrYkCkdCGY~ft~~ 36 (59)
T PHA00626 21 SDDYVCCDCGYNDSKD 36 (59)
T ss_pred CcceEcCCCCCeechh
Confidence 3579999999876543
No 312
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=62.40 E-value=4.6 Score=29.90 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=19.1
Q ss_pred HHHHHhhcccCCCCeeEEecC
Q 021494 14 KKALNRKFDIEGIPCLVVLQP 34 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l~~~~~ 34 (311)
..+++++|+|+++|+++++..
T Consensus 64 ~~~~~~~~~i~~~P~~~~~~~ 84 (105)
T cd02998 64 NKDLAKKYGVSGFPTLKFFPK 84 (105)
T ss_pred chhhHHhCCCCCcCEEEEEeC
Confidence 578999999999999999985
No 313
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=62.03 E-value=6.7 Score=30.63 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.8
Q ss_pred HHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 14 KKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
..++.+.|++.++|+.+++++ +|+++
T Consensus 94 ~~~~~~~~~v~~~P~~~vid~---~G~v~ 119 (126)
T cd03012 94 DYATWRAYGNQYWPALYLIDP---TGNVR 119 (126)
T ss_pred chHHHHHhCCCcCCeEEEECC---CCcEE
Confidence 467889999999999999997 88775
No 314
>PTZ00056 glutathione peroxidase; Provisional
Probab=61.87 E-value=3.4 Score=35.59 Aligned_cols=11 Identities=18% Similarity=0.102 Sum_probs=10.1
Q ss_pred cceeEeCCCCC
Q 021494 282 SGWAYQCLECG 292 (311)
Q Consensus 282 ~~w~~~C~~c~ 292 (311)
++|+.||++|.
T Consensus 45 ~fwAswC~~C~ 55 (199)
T PTZ00056 45 TNSASKCGLTK 55 (199)
T ss_pred EEECCCCCChH
Confidence 79999999995
No 315
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=61.64 E-value=6.4 Score=30.62 Aligned_cols=27 Identities=7% Similarity=0.181 Sum_probs=23.2
Q ss_pred HHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 13 TKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 13 ~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
.+.++++.|++.++|+.+++++ +|+++
T Consensus 88 ~~~~~~~~~~v~~~P~~~~ld~---~G~v~ 114 (127)
T cd03010 88 PDGRVGIDLGVYGVPETFLIDG---DGIIR 114 (127)
T ss_pred CcchHHHhcCCCCCCeEEEECC---CceEE
Confidence 3567999999999999999997 88875
No 316
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=61.23 E-value=4.5 Score=27.61 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=17.5
Q ss_pred CHHHHHHHHhhcccCCCCeeEE
Q 021494 10 DLETKKALNRKFDIEGIPCLVV 31 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~ 31 (311)
|.+..+.+.++|++.++|++++
T Consensus 37 d~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 37 DAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EcccCHhHHHHcCCcccCEEEE
Confidence 3344567999999999999865
No 317
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=60.92 E-value=4.5 Score=25.66 Aligned_cols=19 Identities=32% Similarity=1.087 Sum_probs=15.3
Q ss_pred CcccccccCCCcceeEeCCC
Q 021494 271 PFICCDCDEQGSGWAYQCLE 290 (311)
Q Consensus 271 ~~~Cd~C~~~g~~w~~~C~~ 290 (311)
...|..|.+.|+ |+|.|+.
T Consensus 4 ~~~CqkC~~~GH-~tyeC~~ 22 (42)
T PF13917_consen 4 RVRCQKCGQKGH-WTYECPN 22 (42)
T ss_pred CCcCcccCCCCc-chhhCCC
Confidence 457888998886 8999984
No 318
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=60.84 E-value=9.4 Score=28.89 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=22.3
Q ss_pred HHHHhhcccCCCCeeEEecCCCCCCceeec
Q 021494 15 KALNRKFDIEGIPCLVVLQPYDDKDDATLH 44 (311)
Q Consensus 15 ~~l~~~~~i~~~P~l~~~~~~~~~g~~~~~ 44 (311)
..+.++|++.++|+.+++++ +|+++..
T Consensus 85 ~~~~~~~~~~~~P~~~vid~---~G~v~~~ 111 (114)
T cd02967 85 AELGMAYQVSKLPYAVLLDE---AGVIAAK 111 (114)
T ss_pred HHHHhhcCCCCcCeEEEECC---CCeEEec
Confidence 45888999999999999997 8877543
No 319
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=60.60 E-value=1.3 Score=43.70 Aligned_cols=44 Identities=32% Similarity=0.549 Sum_probs=33.3
Q ss_pred cccceeeecCCCCCCcccccccCCCcceeEe---CCCCCCCccccccccc
Q 021494 257 RHELNLVSEGTGGGPFICCDCDEQGSGWAYQ---CLECGYEVHPKCVRAV 303 (311)
Q Consensus 257 ~~~~~~~~~~~~~~~~~Cd~C~~~g~~w~~~---C~~c~~~~h~~c~~~~ 303 (311)
+|.+-+.+ -+.+-.||.|++|-.|-+-+ |.-|+...|.+||.+-
T Consensus 145 PH~l~vhS---Y~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~ki 191 (888)
T KOG4236|consen 145 PHTLFVHS---YKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFKI 191 (888)
T ss_pred cceeeeec---ccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhcC
Confidence 45555422 23466899999999877554 9999999999999983
No 320
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=60.42 E-value=23 Score=31.09 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=34.5
Q ss_pred eCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHH
Q 021494 95 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIK 139 (311)
Q Consensus 95 ~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~ 139 (311)
..++. .+...+..++++++.|.-.-||+|+...+.+.+.+....
T Consensus 71 ~~~~~-~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~ 114 (244)
T COG1651 71 TPDGK-DVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDG 114 (244)
T ss_pred cCCCC-cccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcC
Confidence 56666 566666667899999999999999999998887655544
No 321
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=60.28 E-value=11 Score=29.21 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=22.3
Q ss_pred HHHHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 11 LETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 11 ~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
.+....|.++|++...|+++++. +|+.+
T Consensus 68 ~~~e~~L~~r~gv~~~PaLvf~R----~g~~l 95 (107)
T PF07449_consen 68 RAAERALAARFGVRRWPALVFFR----DGRYL 95 (107)
T ss_dssp HHHHHHHHHHHT-TSSSEEEEEE----TTEEE
T ss_pred chhHHHHHHHhCCccCCeEEEEE----CCEEE
Confidence 44668999999999999999998 46554
No 322
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=59.62 E-value=77 Score=27.76 Aligned_cols=84 Identities=12% Similarity=0.166 Sum_probs=59.6
Q ss_pred eEe-eCCCCceeecc---ccCCCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHH
Q 021494 92 YLL-GHPPDEKVPVS---SLVGKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFE 167 (311)
Q Consensus 92 f~l-~~~g~~~v~l~---~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~ 167 (311)
|++ -.+|+ .+.-. +++.-+++|..|-+.-+.|..+...|.=|+++|+ .+.++-|...
T Consensus 139 ~V~El~~gk-qfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP-----------~vKFckikss------- 199 (273)
T KOG3171|consen 139 FVYELETGK-QFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP-----------IVKFCKIKSS------- 199 (273)
T ss_pred eEEEeccch-hHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC-----------ceeEEEeeec-------
Confidence 445 55565 44322 1233467788888999999999999988888886 3566666432
Q ss_pred HHHhcCCCcccccCchhHHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 168 SYFGTMPWLALPFGDPTIKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 168 ~~~~~~~~~~~p~~~d~~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
.-....+|...++|++.|+ ++|++|.-
T Consensus 200 -----------------~~gas~~F~~n~lP~LliY-kgGeLIgN 226 (273)
T KOG3171|consen 200 -----------------NTGASDRFSLNVLPTLLIY-KGGELIGN 226 (273)
T ss_pred -----------------cccchhhhcccCCceEEEe-eCCchhHH
Confidence 2245788999999999999 88888754
No 323
>PRK12496 hypothetical protein; Provisional
Probab=59.54 E-value=6 Score=33.06 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=10.1
Q ss_pred cccccccCCCc--ceeEeCCCCCCC
Q 021494 272 FICCDCDEQGS--GWAYQCLECGYE 294 (311)
Q Consensus 272 ~~Cd~C~~~g~--~w~~~C~~c~~~ 294 (311)
+.|.+|++.-+ .....|+.|+..
T Consensus 128 ~~C~gC~~~~~~~~~~~~C~~CG~~ 152 (164)
T PRK12496 128 KVCKGCKKKYPEDYPDDVCEICGSP 152 (164)
T ss_pred EECCCCCccccCCCCCCcCCCCCCh
Confidence 34555554443 233345555443
No 324
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=59.35 E-value=5.1 Score=21.82 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=16.0
Q ss_pred cccccCCCcceeEeCCCCCCCc
Q 021494 274 CCDCDEQGSGWAYQCLECGYEV 295 (311)
Q Consensus 274 Cd~C~~~g~~w~~~C~~c~~~~ 295 (311)
|+.|+.....=+--|..|+..|
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCCcCcchhhhCCcC
Confidence 7788887765555688888764
No 325
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=58.98 E-value=21 Score=28.65 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=18.0
Q ss_pred HHHHHHhCCCCccceEEEECCCCcEEE
Q 021494 185 IKELTKYFDVQGIPCLVIIGPEGKTVT 211 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~~G~iv~ 211 (311)
.....+.++|.++|+++| +|+.+.
T Consensus 125 ~~~~~~~~~i~~tPt~~i---nG~~~~ 148 (162)
T PF13462_consen 125 DSQLARQLGITGTPTFFI---NGKYVV 148 (162)
T ss_dssp HHHHHHHHT-SSSSEEEE---TTCEEE
T ss_pred HHHHHHHcCCccccEEEE---CCEEeC
Confidence 336678899999999998 777753
No 326
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.77 E-value=18 Score=30.89 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=42.6
Q ss_pred eeCCCCceeeccccC--CCEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEe
Q 021494 94 LGHPPDEKVPVSSLV--GKTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVS 158 (311)
Q Consensus 94 l~~~g~~~v~l~~~~--gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs 158 (311)
++..|+ .|.+.++. .+.|+....-+.|-.|+.....|.++..-+... ++.+|+|-
T Consensus 35 l~~rg~-~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~---------Gv~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGE-SVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDEL---------GVVLIAVG 91 (197)
T ss_pred hhhcCc-eeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHh---------CCEEEEEe
Confidence 577888 99998874 355666666799999999999999995555544 77888775
No 327
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=58.67 E-value=2.5 Score=35.88 Aligned_cols=13 Identities=15% Similarity=0.015 Sum_probs=11.2
Q ss_pred CCcceeEeCCCCC
Q 021494 280 QGSGWAYQCLECG 292 (311)
Q Consensus 280 ~g~~w~~~C~~c~ 292 (311)
...+|+.||++|.
T Consensus 73 lV~FwaswCp~C~ 85 (181)
T PRK13728 73 VVLFMQGHCPYCH 85 (181)
T ss_pred EEEEECCCCHhHH
Confidence 4479999999995
No 328
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=58.54 E-value=38 Score=25.15 Aligned_cols=64 Identities=16% Similarity=0.097 Sum_probs=47.0
Q ss_pred CEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHH
Q 021494 110 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 189 (311)
Q Consensus 110 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 189 (311)
++++=.|.|...+.++.....+.++.+++... .+++=.|.+-. ..+++
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g---------~y~LeVIDv~~-----------------------qP~lA 50 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQG---------VYALKVIDVLK-----------------------NPQLA 50 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC---------ceEEEEEEccc-----------------------CHhHH
Confidence 45666677888889999999999988876542 24444444433 45899
Q ss_pred HhCCCCccceEEEECC
Q 021494 190 KYFDVQGIPCLVIIGP 205 (311)
Q Consensus 190 ~~~~v~~~Pt~vlid~ 205 (311)
+.++|.++||++=.-|
T Consensus 51 E~~~IvATPtLIK~~P 66 (87)
T TIGR02654 51 EEDKILATPTLSKILP 66 (87)
T ss_pred hHCCEEEecHHhhcCC
Confidence 9999999999877654
No 329
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=57.59 E-value=6.3 Score=30.44 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=20.3
Q ss_pred CHHHHHHHHhhcccCCCCeeEEec
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQ 33 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~ 33 (311)
|.+....++.+|+|.++|++++++
T Consensus 60 d~d~~~~l~~~~~v~~vPt~~i~~ 83 (113)
T cd02975 60 DFDEDKEKAEKYGVERVPTTIFLQ 83 (113)
T ss_pred eCCcCHHHHHHcCCCcCCEEEEEe
Confidence 334567899999999999999987
No 330
>PRK09381 trxA thioredoxin; Provisional
Probab=57.57 E-value=6.1 Score=29.86 Aligned_cols=28 Identities=21% Similarity=0.591 Sum_probs=22.1
Q ss_pred HHHHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 11 LETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 11 ~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
.+....++++|+|.++|+++++. +|..+
T Consensus 61 ~~~~~~~~~~~~v~~~Pt~~~~~----~G~~~ 88 (109)
T PRK09381 61 IDQNPGTAPKYGIRGIPTLLLFK----NGEVA 88 (109)
T ss_pred CCCChhHHHhCCCCcCCEEEEEe----CCeEE
Confidence 34456789999999999999996 67654
No 331
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=57.09 E-value=17 Score=33.97 Aligned_cols=26 Identities=19% Similarity=0.608 Sum_probs=22.4
Q ss_pred CCCcccccccCCCcceeEeCCCCC-CC
Q 021494 269 GGPFICCDCDEQGSGWAYQCLECG-YE 294 (311)
Q Consensus 269 ~~~~~Cd~C~~~g~~w~~~C~~c~-~~ 294 (311)
...+.|.+|+-.-..|.+.|+-|+ |+
T Consensus 352 ~p~~~c~~cg~~~~~~~~~c~~c~~~~ 378 (389)
T PRK11788 352 KPRYRCRNCGFTARTLYWHCPSCKAWE 378 (389)
T ss_pred CCCEECCCCCCCCccceeECcCCCCcc
Confidence 345889999999999999999995 54
No 332
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=56.90 E-value=9.9 Score=28.00 Aligned_cols=26 Identities=12% Similarity=0.428 Sum_probs=22.7
Q ss_pred HHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 14 KKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
...+.+.|++.++|+++++++ +|+++
T Consensus 86 ~~~~~~~~~~~~~P~~~l~d~---~g~v~ 111 (116)
T cd02966 86 DGELAKAYGVRGLPTTFLIDR---DGRIR 111 (116)
T ss_pred cchHHHhcCcCccceEEEECC---CCcEE
Confidence 367999999999999999997 88775
No 333
>PHA02125 thioredoxin-like protein
Probab=56.74 E-value=4.8 Score=28.49 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=16.1
Q ss_pred HHHHHHhhcccCCCCeeE
Q 021494 13 TKKALNRKFDIEGIPCLV 30 (311)
Q Consensus 13 ~~~~l~~~~~i~~~P~l~ 30 (311)
...+++++|+|.++||++
T Consensus 34 ~~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 34 EGVELTAKHHIRSLPTLV 51 (75)
T ss_pred CCHHHHHHcCCceeCeEE
Confidence 457899999999999987
No 334
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=55.84 E-value=11 Score=31.67 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=16.1
Q ss_pred HHHHHHhCCCCccceEEEECC
Q 021494 185 IKELTKYFDVQGIPCLVIIGP 205 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~ 205 (311)
+..+++.++|+++||+||+|.
T Consensus 136 D~~la~~m~I~~~Ptlvi~~~ 156 (176)
T PF13743_consen 136 DQQLAREMGITGFPTLVIFNE 156 (176)
T ss_dssp HHHHHHHTT-SSSSEEEEE--
T ss_pred HHHHHHHcCCCCCCEEEEEec
Confidence 457888999999999999983
No 335
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=55.65 E-value=11 Score=25.25 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=19.5
Q ss_pred CCCCCcccccccC--------CCcceeEeCCCCCC
Q 021494 267 TGGGPFICCDCDE--------QGSGWAYQCLECGY 293 (311)
Q Consensus 267 ~~~~~~~Cd~C~~--------~g~~w~~~C~~c~~ 293 (311)
....+.+|..|.. ......|.|.-|++
T Consensus 18 ~~r~aLIC~~C~~hNGla~~~~~~~i~y~C~~Cg~ 52 (54)
T PF10058_consen 18 SNRYALICSKCFSHNGLAPKEEFEEIQYRCPYCGA 52 (54)
T ss_pred cCceeEECcccchhhcccccccCCceEEEcCCCCC
Confidence 4456778888864 33467999999985
No 336
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=54.46 E-value=1.6e+02 Score=26.26 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=30.6
Q ss_pred EEEEEEecCC-Chh-hHhhhHHHHHHHHHHHhhhhhcCCCCC-CeEEEEEecCCCHHH
Q 021494 111 TVGLYFSARW-CIP-CEKFMPKLLSIYQKIKQNLVEKGDALE-DFEVVFVSTDRDQTS 165 (311)
Q Consensus 111 ~vll~F~a~w-C~~-C~~~~p~l~~l~~~~~~~~~~~~~~~~-~~~vv~Vs~d~~~~~ 165 (311)
+|-|.++.+- =+. =....+.+.++.++|... .+ ++.+-+|..+.+.+.
T Consensus 26 pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~-------s~g~i~v~~iDp~~~~~~ 76 (271)
T PF09822_consen 26 PVTITVYFSRELPPELSPLRKQVRDLLDEYARY-------SPGKIKVEFIDPDENPSE 76 (271)
T ss_pred CEEEEEEECCCcchhhhHHHHHHHHHHHHHHHh-------CCCceEEEEECCCCChHH
Confidence 4444444432 222 456667788888888876 44 799999987665543
No 337
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=54.39 E-value=1.7 Score=42.86 Aligned_cols=36 Identities=28% Similarity=0.721 Sum_probs=29.3
Q ss_pred CCCcccccccCCCcce---eEeCCCCCCCcccccccccc
Q 021494 269 GGPFICCDCDEQGSGW---AYQCLECGYEVHPKCVRAVD 304 (311)
Q Consensus 269 ~~~~~Cd~C~~~g~~w---~~~C~~c~~~~h~~c~~~~~ 304 (311)
..+-+|..|+++--|- --+|+.|.|..|.+||.++-
T Consensus 276 ~rpTVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~~v~ 314 (888)
T KOG4236|consen 276 TRPTVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAMKVP 314 (888)
T ss_pred cCchHHHHHHHHHHHHHhcCcccccCCcchhhhhhhhcc
Confidence 3567999999976543 46799999999999998754
No 338
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=54.17 E-value=7.1 Score=27.51 Aligned_cols=20 Identities=15% Similarity=0.552 Sum_probs=18.2
Q ss_pred HHHHHhhcccCCCCeeEEec
Q 021494 14 KKALNRKFDIEGIPCLVVLQ 33 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l~~~~ 33 (311)
...+...|++.++|+++++.
T Consensus 52 ~~~~~~~~~v~~~P~~~~~~ 71 (93)
T cd02947 52 NPELAEEYGVRSIPTFLFFK 71 (93)
T ss_pred ChhHHHhcCcccccEEEEEE
Confidence 57799999999999999987
No 339
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=53.80 E-value=6.8 Score=27.66 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=16.7
Q ss_pred HHHHHHHhhcccCCCCeeEE
Q 021494 12 ETKKALNRKFDIEGIPCLVV 31 (311)
Q Consensus 12 ~~~~~l~~~~~i~~~P~l~~ 31 (311)
+....+.++|++.++|++++
T Consensus 40 ~~~~~~~~~~~v~~vPt~~~ 59 (82)
T TIGR00411 40 MENPQKAMEYGIMAVPAIVI 59 (82)
T ss_pred ccCHHHHHHcCCccCCEEEE
Confidence 34567889999999999986
No 340
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.24 E-value=8.1 Score=35.34 Aligned_cols=29 Identities=10% Similarity=0.413 Sum_probs=24.3
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
|++.+..++.+|+|+.||+++++. +|..+
T Consensus 82 N~D~~p~vAaqfgiqsIPtV~af~----dGqpV 110 (304)
T COG3118 82 NCDAEPMVAAQFGVQSIPTVYAFK----DGQPV 110 (304)
T ss_pred cCCcchhHHHHhCcCcCCeEEEee----CCcCc
Confidence 566788999999999999999987 56554
No 341
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=53.06 E-value=9.4 Score=29.87 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.6
Q ss_pred CHHHHHHHHhhcccCCCCeeEEec
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQ 33 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~ 33 (311)
|.+....++++|+|+.+||.+++.
T Consensus 53 DVDev~dva~~y~I~amPtfvffk 76 (114)
T cd02986 53 DVDKVPVYTQYFDISYIPSTIFFF 76 (114)
T ss_pred eccccHHHHHhcCceeCcEEEEEE
Confidence 445678899999999999999887
No 342
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=52.79 E-value=6.2 Score=26.92 Aligned_cols=21 Identities=38% Similarity=1.273 Sum_probs=13.3
Q ss_pred cccccccCCCcceeEeCCCCCCC
Q 021494 272 FICCDCDEQGSGWAYQCLECGYE 294 (311)
Q Consensus 272 ~~Cd~C~~~g~~w~~~C~~c~~~ 294 (311)
..|-.|+++|+ .|.|+-|+|.
T Consensus 39 ~Rc~~CRk~g~--~Y~Cp~CGF~ 59 (61)
T COG2888 39 YRCAKCRKLGN--PYRCPKCGFE 59 (61)
T ss_pred ehhhhHHHcCC--ceECCCcCcc
Confidence 34444445554 6889999884
No 343
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=52.38 E-value=12 Score=24.40 Aligned_cols=24 Identities=29% Similarity=0.733 Sum_probs=16.8
Q ss_pred ccccccCCCc--c----eeEeCCCCCCCcc
Q 021494 273 ICCDCDEQGS--G----WAYQCLECGYEVH 296 (311)
Q Consensus 273 ~Cd~C~~~g~--~----w~~~C~~c~~~~h 296 (311)
.|+.|+.+-. . ..|.|+.|+|-..
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~~~ 31 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGYEEP 31 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCCeEE
Confidence 4778877553 2 3688999997654
No 344
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=51.83 E-value=16 Score=32.60 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=25.5
Q ss_pred CCCEEEEEEecCCChhhHhhhHHHHHHHHHHH
Q 021494 108 VGKTVGLYFSARWCIPCEKFMPKLLSIYQKIK 139 (311)
Q Consensus 108 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~ 139 (311)
.||+.+++..+.|||.|..+.=.|-....+|.
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcC
Confidence 58999999999999999988765655555554
No 345
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=51.58 E-value=63 Score=26.68 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=64.7
Q ss_pred eeeccccCCCEEEEEEecCCChhhHhhhHHHHHHHH-HHHhhhhhcCCCCCCeEE-EEEecCCC--------HHHHHHHH
Q 021494 101 KVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLSIYQ-KIKQNLVEKGDALEDFEV-VFVSTDRD--------QTSFESYF 170 (311)
Q Consensus 101 ~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~-~~~~~~~~~~~~~~~~~v-v~Vs~d~~--------~~~~~~~~ 170 (311)
+...+++-||+-+|.-.|-....=..-.+.+..+-. +|... .++- --|+.|+- .....+.-
T Consensus 51 ~W~SAqL~GKvRV~~hiAGRtsaKE~Na~lieaIk~a~fp~~---------~YQTTTIiN~DDAi~GtgmFVkssae~~K 121 (184)
T COG3054 51 TWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKFPHD---------RYQTTTIINTDDAIPGTGMFVKSSAESNK 121 (184)
T ss_pred ccchhhccchhhhhhhhhcccchhhhchHHHHHHHhccCChH---------HceeeEEeccCCccccccceeecchhhcc
Confidence 344567889998888877665433333444443322 22211 1222 23444542 12334444
Q ss_pred hcCCCcccccCchhHHHHHHhCCCCcc-ceEEEECCCCcEEEeccchhhhcccccCCCCcHHHHHHHHHHHHH
Q 021494 171 GTMPWLALPFGDPTIKELTKYFDVQGI-PCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQMEE 242 (311)
Q Consensus 171 ~~~~~~~~p~~~d~~~~l~~~~~v~~~-Pt~vlid~~G~iv~~~g~~~~~~~g~~~~p~~~~~i~~L~~~~~~ 242 (311)
+.+||-.+-+.. .......++...- -.++++|++|++... ..| ..+.+.+.+....+.+
T Consensus 122 ke~pwSq~vlD~--~gvak~AWqL~e~~SaivVlDk~G~Vkfv-------keG----aLt~aevQ~Vi~ll~~ 181 (184)
T COG3054 122 KEYPWSQFVLDS--NGVAKNAWQLKEESSAVVVLDKDGRVKFV-------KEG----ALTQAEVQQVIDLLQK 181 (184)
T ss_pred ccCCceeeEEcc--chhhhhhhccccccceEEEEcCCCcEEEE-------ecC----CccHHHHHHHHHHHHH
Confidence 567776665543 4444447777644 467778999999987 333 2345555555544443
No 346
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=51.16 E-value=24 Score=29.58 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=22.1
Q ss_pred EEecCCChhhHhhhHHHHHHHHHHHhh
Q 021494 115 YFSARWCIPCEKFMPKLLSIYQKIKQN 141 (311)
Q Consensus 115 ~F~a~wC~~C~~~~p~l~~l~~~~~~~ 141 (311)
+|.-|.|+.|-...|.+.++..+|..+
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~ 28 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK 28 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence 688999999999999999999999864
No 347
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=51.00 E-value=35 Score=26.37 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=22.8
Q ss_pred EEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCC
Q 021494 115 YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 162 (311)
Q Consensus 115 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~ 162 (311)
.|+.++|+.|++....|.+ + ++.+..+++..+
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~---------~i~~~~idi~~~ 34 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------N---------GIEYQFIDIGED 34 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------c---------CCceEEEecCCC
Confidence 4678999999988876654 2 466777776554
No 348
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=50.56 E-value=5.9 Score=36.33 Aligned_cols=71 Identities=13% Similarity=0.234 Sum_probs=46.6
Q ss_pred CEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHH
Q 021494 110 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 189 (311)
Q Consensus 110 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 189 (311)
-+|-+.||++|||..+...|.+.-.+..|.. ++..+| +. +.. ..++.
T Consensus 77 ~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~-----------i~h~~v--ee-------~~~-------------lpsv~ 123 (319)
T KOG2640|consen 77 DYVSLLFYASWCPFSRAVRPEFDVRSSLFSS-----------IQHFAV--EE-------SQA-------------LPSVF 123 (319)
T ss_pred CcccccchhcccCcccccCcccchhhhhccc-----------cccccH--HH-------Hhh-------------cccch
Confidence 4688899999999999998888776666541 222221 11 111 23566
Q ss_pred HhCCCCccceEEEECCCCcEEEec
Q 021494 190 KYFDVQGIPCLVIIGPEGKTVTKQ 213 (311)
Q Consensus 190 ~~~~v~~~Pt~vlid~~G~iv~~~ 213 (311)
..|++.+.|+..+.+..-..+++.
T Consensus 124 s~~~~~~~ps~~~~n~t~~~~~~~ 147 (319)
T KOG2640|consen 124 SSYGIHSEPSNLMLNQTCPASYRG 147 (319)
T ss_pred hccccccCCcceeeccccchhhcc
Confidence 777787788777777666655553
No 349
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=49.11 E-value=13 Score=25.38 Aligned_cols=11 Identities=45% Similarity=1.262 Sum_probs=8.0
Q ss_pred eeEeCCCCCCC
Q 021494 284 WAYQCLECGYE 294 (311)
Q Consensus 284 w~~~C~~c~~~ 294 (311)
=.|.|+.|+|.
T Consensus 47 ~~Y~CP~CGF~ 57 (59)
T PRK14890 47 NPYTCPKCGFE 57 (59)
T ss_pred CceECCCCCCc
Confidence 46788888873
No 350
>PF12353 eIF3g: Eukaryotic translation initiation factor 3 subunit G ; InterPro: IPR024675 At least eleven different protein factors are involved in initiation of protein synthesis in eukaryotes. Binding of initiator tRNA and mRNA to the 40S subunit requires the presence of the translation initiation factors eIF-2 and eIF-3, with eIF-3 being particularly important for 80S ribosome dissociation and mRNA binding []. eIF-3 is the most complex translation inititation factor, consisting of about 13 putative subunits and having a molecular weight of between 550 - 700 kDa in mammalian cells. Subunits are designated eIF-3a - eIF-3m; the large number of subunits means that the interactions between the individual subunits that make up the eIF-3 complex are complex and varied. Subunit G is required for eIF3 integrity. This entry represents a domain of approximately 130 amino acids in length found at the N terminus of eukaryotic translation initiation factor 3 subunit G. This domain is commonly found in association with the RNA recognition domain PF00076 from PFAM.
Probab=49.00 E-value=8.1 Score=30.88 Aligned_cols=22 Identities=27% Similarity=0.720 Sum_probs=18.4
Q ss_pred CCCCCcccccccCCCcceeEeCCC
Q 021494 267 TGGGPFICCDCDEQGSGWAYQCLE 290 (311)
Q Consensus 267 ~~~~~~~Cd~C~~~g~~w~~~C~~ 290 (311)
.+.....|-.|+ |..|++.|+-
T Consensus 102 ~~~~~v~CR~Ck--GdH~T~~CPy 123 (128)
T PF12353_consen 102 KGKSKVKCRICK--GDHWTSKCPY 123 (128)
T ss_pred cCCceEEeCCCC--CCcccccCCc
Confidence 455678999996 9999999984
No 351
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=48.49 E-value=9.5 Score=20.46 Aligned_cols=10 Identities=40% Similarity=1.291 Sum_probs=6.5
Q ss_pred EeCCCCCCCc
Q 021494 286 YQCLECGYEV 295 (311)
Q Consensus 286 ~~C~~c~~~~ 295 (311)
|.|..|+|--
T Consensus 1 y~C~~C~y~t 10 (24)
T PF13909_consen 1 YKCPHCSYST 10 (24)
T ss_dssp EE-SSSS-EE
T ss_pred CCCCCCCCcC
Confidence 7899999854
No 352
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=48.40 E-value=15 Score=28.33 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=14.8
Q ss_pred EEecCCChhhHhhhHHHHH
Q 021494 115 YFSARWCIPCEKFMPKLLS 133 (311)
Q Consensus 115 ~F~a~wC~~C~~~~p~l~~ 133 (311)
.|..++|+.|++....|.+
T Consensus 3 iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEECCCCHHHHHHHHHHHH
Confidence 4678999999988776643
No 353
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=47.91 E-value=12 Score=28.62 Aligned_cols=23 Identities=13% Similarity=0.510 Sum_probs=20.3
Q ss_pred HHHHHhhcccCCCCeeEEecCCCCCC
Q 021494 14 KKALNRKFDIEGIPCLVVLQPYDDKD 39 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l~~~~~~~~~g 39 (311)
+.++.++|+|.++|+++++++ +|
T Consensus 82 ~~~~~~~~~i~~~P~~~vid~---~g 104 (123)
T cd03011 82 DGVISARWGVSVTPAIVIVDP---GG 104 (123)
T ss_pred CcHHHHhCCCCcccEEEEEcC---CC
Confidence 467999999999999999996 66
No 354
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=47.64 E-value=18 Score=26.72 Aligned_cols=26 Identities=12% Similarity=0.289 Sum_probs=21.9
Q ss_pred CCHHHHHHHHhhcccC--CCCeeEEecC
Q 021494 9 SDLETKKALNRKFDIE--GIPCLVVLQP 34 (311)
Q Consensus 9 ~d~~~~~~l~~~~~i~--~~P~l~~~~~ 34 (311)
-|.+...+++..|+|. ++|+++++..
T Consensus 50 vd~~~~~~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 50 VDADDFGRHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred EchHhhHHHHHHcCCChhhCCEEEEEec
Confidence 3566677899999999 9999999884
No 355
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=47.63 E-value=95 Score=21.66 Aligned_cols=18 Identities=11% Similarity=0.036 Sum_probs=12.9
Q ss_pred EEecCCChhhHhhhHHHH
Q 021494 115 YFSARWCIPCEKFMPKLL 132 (311)
Q Consensus 115 ~F~a~wC~~C~~~~p~l~ 132 (311)
.+..++|+.|.+..-.|.
T Consensus 4 Ly~~~~sp~~~kv~~~L~ 21 (77)
T cd03041 4 LYEFEGSPFCRLVREVLT 21 (77)
T ss_pred EecCCCCchHHHHHHHHH
Confidence 455679999997665553
No 356
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=47.59 E-value=15 Score=30.97 Aligned_cols=23 Identities=22% Similarity=0.536 Sum_probs=20.5
Q ss_pred HHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 16 ALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 16 ~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
.++.+|+|.++||++++. +|+.+
T Consensus 126 ~l~~~f~v~~vPTlllyk----~G~~v 148 (175)
T cd02987 126 GASDEFDTDALPALLVYK----GGELI 148 (175)
T ss_pred hhHHhCCCCCCCEEEEEE----CCEEE
Confidence 689999999999999998 67765
No 357
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=47.44 E-value=6.7 Score=23.30 Aligned_cols=24 Identities=33% Similarity=0.919 Sum_probs=13.2
Q ss_pred cccccccCCCc---ceeEeCCCCCCCc
Q 021494 272 FICCDCDEQGS---GWAYQCLECGYEV 295 (311)
Q Consensus 272 ~~Cd~C~~~g~---~w~~~C~~c~~~~ 295 (311)
+.|..|+..-. .=.-+|+.|+|.+
T Consensus 1 Y~C~~Cg~~~~~~~~~~irC~~CG~RI 27 (32)
T PF03604_consen 1 YICGECGAEVELKPGDPIRCPECGHRI 27 (32)
T ss_dssp EBESSSSSSE-BSTSSTSSBSSSS-SE
T ss_pred CCCCcCCCeeEcCCCCcEECCcCCCeE
Confidence 35667766443 2234788888754
No 358
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=46.96 E-value=94 Score=21.45 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=13.2
Q ss_pred EEecCCChhhHhhhHHHH
Q 021494 115 YFSARWCIPCEKFMPKLL 132 (311)
Q Consensus 115 ~F~a~wC~~C~~~~p~l~ 132 (311)
.|..+.|+.|++..-.|.
T Consensus 4 Ly~~~~~p~c~kv~~~L~ 21 (77)
T cd03040 4 LYQYKTCPFCCKVRAFLD 21 (77)
T ss_pred EEEcCCCHHHHHHHHHHH
Confidence 466688999998775543
No 359
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=46.44 E-value=94 Score=24.87 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=19.9
Q ss_pred HHHHHHhCCCCccceEEEECCCC
Q 021494 185 IKELTKYFDVQGIPCLVIIGPEG 207 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~~G 207 (311)
+..+.++|+|+..|++|+...++
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCC
Confidence 56899999999999999996543
No 360
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=46.36 E-value=15 Score=27.81 Aligned_cols=20 Identities=5% Similarity=0.494 Sum_probs=16.6
Q ss_pred HHHHh-hcccCCCCeeEEecC
Q 021494 15 KALNR-KFDIEGIPCLVVLQP 34 (311)
Q Consensus 15 ~~l~~-~~~i~~~P~l~~~~~ 34 (311)
..++. .|+|+++|+++++..
T Consensus 67 ~~~~~~~~~v~~~Pti~~f~~ 87 (109)
T cd02993 67 REFAKEELQLKSFPTILFFPK 87 (109)
T ss_pred hhhHHhhcCCCcCCEEEEEcC
Confidence 56675 599999999999974
No 361
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=46.22 E-value=7.7 Score=34.42 Aligned_cols=12 Identities=17% Similarity=0.033 Sum_probs=10.5
Q ss_pred cceeEeCCCCCC
Q 021494 282 SGWAYQCLECGY 293 (311)
Q Consensus 282 ~~w~~~C~~c~~ 293 (311)
.+|+.||++|.-
T Consensus 105 ~FwAswCp~c~~ 116 (236)
T PLN02399 105 VNVASKCGLTSS 116 (236)
T ss_pred EEEcCCCcchHH
Confidence 799999999953
No 362
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=45.50 E-value=14 Score=31.23 Aligned_cols=56 Identities=23% Similarity=0.412 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhccCCCcccccCccccceeeecCCCCCCcccccccCCCc-----ceeEeCCCCCCCccc
Q 021494 230 EAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGS-----GWAYQCLECGYEVHP 297 (311)
Q Consensus 230 ~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cd~C~~~g~-----~w~~~C~~c~~~~h~ 297 (311)
+..++.+...+....+++..+.... ....-|.|+.|+..-. ..-+.|+.||-.|..
T Consensus 88 ~~i~d~ik~~~~~~~~klk~~l~~e------------~~~~~Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 88 EKLPEIIKKKKMEELKKLKEQLEEE------------ENNMFFFCPNCHIRFTFDEAMEYGFRCPQCGEMLEE 148 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc------------cCCCEEECCCCCcEEeHHHHhhcCCcCCCCCCCCee
Confidence 4445555555555444444333221 2335589999987543 467889999977754
No 363
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=45.15 E-value=11 Score=20.95 Aligned_cols=24 Identities=25% Similarity=0.589 Sum_probs=16.9
Q ss_pred cccccccCCCcceeEeCCCCCCCc
Q 021494 272 FICCDCDEQGSGWAYQCLECGYEV 295 (311)
Q Consensus 272 ~~Cd~C~~~g~~w~~~C~~c~~~~ 295 (311)
..|+.|+.....=+-.|+.|+..|
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred CCCcccCCcCCcccccChhhCCCC
Confidence 468888886666666788887654
No 364
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=44.93 E-value=25 Score=26.85 Aligned_cols=27 Identities=7% Similarity=0.433 Sum_probs=22.2
Q ss_pred HHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 14 KKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
..++++.|++.++|+++++++ .+|+.+
T Consensus 65 ~~~~~~~~~~~~~P~~~~i~~--~~g~~l 91 (114)
T cd02958 65 GQRFLQSYKVDKYPHIAIIDP--RTGEVL 91 (114)
T ss_pred HHHHHHHhCccCCCeEEEEeC--ccCcEe
Confidence 367999999999999999996 256654
No 365
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=44.08 E-value=13 Score=30.79 Aligned_cols=56 Identities=27% Similarity=0.393 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHHHhccCCCcccccCccccceeeecCCCCCCcccccccCCCc-----ceeEeCCCCCCCcc
Q 021494 229 TEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGS-----GWAYQCLECGYEVH 296 (311)
Q Consensus 229 ~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cd~C~~~g~-----~w~~~C~~c~~~~h 296 (311)
.++.++.+...+....+.+..+.... ....-|+|+.|+..-+ ..-+.|+.||-.|-
T Consensus 79 ~~~i~d~Ik~~~~~~~~~lk~~l~~e------------~~~~~Y~Cp~c~~r~tf~eA~~~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 79 YEKALDVLKRKLEETAKKLREKLEFE------------TNNMFFICPNMCVRFTFNEAMELNFTCPRCGAMLD 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc------------cCCCeEECCCCCcEeeHHHHHHcCCcCCCCCCEee
Confidence 34455555555555444443322221 2335588999986443 45788999986653
No 366
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=43.97 E-value=20 Score=27.03 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=15.2
Q ss_pred EEEecCCChhhHhhhHHHHH
Q 021494 114 LYFSARWCIPCEKFMPKLLS 133 (311)
Q Consensus 114 l~F~a~wC~~C~~~~p~l~~ 133 (311)
..|..++|+.|++....|++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 45778999999988765543
No 367
>smart00594 UAS UAS domain.
Probab=43.59 E-value=24 Score=27.54 Aligned_cols=20 Identities=10% Similarity=0.612 Sum_probs=18.9
Q ss_pred HHHHhhcccCCCCeeEEecC
Q 021494 15 KALNRKFDIEGIPCLVVLQP 34 (311)
Q Consensus 15 ~~l~~~~~i~~~P~l~~~~~ 34 (311)
.+++.+|++.++|+++++++
T Consensus 76 ~~l~~~~~~~~~P~~~~l~~ 95 (122)
T smart00594 76 QRVSQFYKLDSFPYVAIVDP 95 (122)
T ss_pred HHHHHhcCcCCCCEEEEEec
Confidence 68999999999999999997
No 368
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=43.52 E-value=17 Score=26.83 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=18.2
Q ss_pred CHHHHHHHHhhcccCCCCeeEE
Q 021494 10 DLETKKALNRKFDIEGIPCLVV 31 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~ 31 (311)
|.+....++.+|+|.++|++++
T Consensus 50 d~~~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 50 DGALFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred EhHhCHHHHHHcCCccCCEEEE
Confidence 4455678999999999999974
No 369
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=43.29 E-value=60 Score=21.92 Aligned_cols=19 Identities=5% Similarity=-0.088 Sum_probs=14.0
Q ss_pred EEecCCChhhHhhhHHHHH
Q 021494 115 YFSARWCIPCEKFMPKLLS 133 (311)
Q Consensus 115 ~F~a~wC~~C~~~~p~l~~ 133 (311)
.|+.++|++|++..-.|..
T Consensus 3 Ly~~~~s~~~~~~~~~L~~ 21 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAE 21 (74)
T ss_pred EEeCCCCcchHHHHHHHHH
Confidence 4667889999987766543
No 370
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=42.66 E-value=12 Score=37.61 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=25.3
Q ss_pred CCCCCCcccccccCCCcceeEeCCCCCCCcccccccc
Q 021494 266 GTGGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRA 302 (311)
Q Consensus 266 ~~~~~~~~Cd~C~~~g~~w~~~C~~c~~~~h~~c~~~ 302 (311)
++......|+.|.....+=-++|.-|+|-+|.+|+-.
T Consensus 184 ktf~~~~fC~~~~~~~l~~gfrC~~C~~KfHq~Cs~~ 220 (678)
T KOG0193|consen 184 KTFFPLAFCDSCCNKFLFTGFRCQTCGYKFHQSCSPR 220 (678)
T ss_pred ccccchhhhhhhcchhhhcccccCCCCCccccccCCC
Confidence 3444456677555444333456999999999999876
No 371
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=42.50 E-value=52 Score=26.16 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=27.3
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCC---CHHHHHHHHhcC
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDR---DQTSFESYFGTM 173 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~---~~~~~~~~~~~~ 173 (311)
+..|..++|+.|++....|.+ + ++.+..+++.. +.+++.+.++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~---------gi~~~~idi~~~~~~~~eL~~~l~~~ 49 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------H---------DIPFTERNIFSSPLTIDEIKQILRMT 49 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------c---------CCCcEEeeccCChhhHHHHHHHHHHh
Confidence 345678999999987765532 2 45555665543 345555555543
No 372
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.22 E-value=81 Score=27.77 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=18.7
Q ss_pred HHHHHHhCCCCccceEEEECCCCcEEEe
Q 021494 185 IKELTKYFDVQGIPCLVIIGPEGKTVTK 212 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~~G~iv~~ 212 (311)
+...++..||++.|++++ +|++.-.
T Consensus 173 d~~~A~e~gI~gVP~fv~---d~~~~V~ 197 (225)
T COG2761 173 DEAAAQEMGIRGVPTFVF---DGKYAVS 197 (225)
T ss_pred HHHHHHHCCCccCceEEE---cCcEeec
Confidence 346788999999999998 5554433
No 373
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=42.10 E-value=60 Score=26.87 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.6
Q ss_pred EEEEEecCCChhhHhhhHHHHHHHHHHH
Q 021494 112 VGLYFSARWCIPCEKFMPKLLSIYQKIK 139 (311)
Q Consensus 112 vll~F~a~wC~~C~~~~p~l~~l~~~~~ 139 (311)
.|.+|+-.-||+|-...+.|.++.+++.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~ 28 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYP 28 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 3667888999999999999999999983
No 374
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=41.92 E-value=19 Score=29.47 Aligned_cols=27 Identities=4% Similarity=0.228 Sum_probs=23.4
Q ss_pred HHHHHhhcccCCCCeeEEecCCCCCCceee
Q 021494 14 KKALNRKFDIEGIPCLVVLQPYDDKDDATL 43 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l~~~~~~~~~g~~~~ 43 (311)
...+.+.|+|.++|+++++++ +|+++.
T Consensus 127 ~~~~~~~~~v~~~P~~~lid~---~g~i~~ 153 (173)
T PRK03147 127 GRQVIDAYGVGPLPTTFLIDK---DGKVVK 153 (173)
T ss_pred cchHHHHcCCCCcCeEEEECC---CCcEEE
Confidence 468899999999999999997 888763
No 375
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=41.54 E-value=14 Score=30.81 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=23.6
Q ss_pred HHHHHHhhcccCCCCeeEEecCCCCCCceee
Q 021494 13 TKKALNRKFDIEGIPCLVVLQPYDDKDDATL 43 (311)
Q Consensus 13 ~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~~ 43 (311)
...++.+.|++.++|+.+++++ +|+++.
T Consensus 125 ~~~~~~~~~~v~~~P~~~~id~---~G~i~~ 152 (173)
T TIGR00385 125 PNGKLGLDLGVYGAPETFLVDG---NGVILY 152 (173)
T ss_pred CCCchHHhcCCeeCCeEEEEcC---CceEEE
Confidence 3467899999999999999997 898753
No 376
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=41.48 E-value=82 Score=24.38 Aligned_cols=21 Identities=14% Similarity=0.488 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCccceEEEECC
Q 021494 185 IKELTKYFDVQGIPCLVIIGP 205 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~ 205 (311)
+..+.++|+|+..|++++...
T Consensus 60 dP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 60 DPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred ChhHHhhCCceEcCEEEEEcC
Confidence 568999999999999999965
No 377
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=41.18 E-value=18 Score=36.19 Aligned_cols=72 Identities=22% Similarity=0.416 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHHHhccCCCcccccCccccceeeecCCCCCCcccccccCCCc--ce-eEeCCCCCCCcccccccccc
Q 021494 229 TEAKLEFLEKQMEEEAKNLPRSEFHIGHRHELNLVSEGTGGGPFICCDCDEQGS--GW-AYQCLECGYEVHPKCVRAVD 304 (311)
Q Consensus 229 ~~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cd~C~~~g~--~w-~~~C~~c~~~~h~~c~~~~~ 304 (311)
+++.-....++++-...+..+ .+...+.|..... +-..+-.|..|+.+-- ++ -|.|--|+-|.|..|.-...
T Consensus 496 te~~kkkWmeqfema~SNi~P-dya~an~H~fqmh---tF~~~tsCkvC~mllrGtfYQGY~C~~c~~~ahkecl~~vp 570 (865)
T KOG2996|consen 496 TEDLKKKWMEQFEMAKSNISP-DYARANNHDFQMH---TFKNTTSCKVCQMLLRGTFYQGYKCEKCGADAHKECLGRVP 570 (865)
T ss_pred cHHHHHHHHHHHHHHHhcCCc-ccccccCcceEEE---eccCCcchHHHHHHhhhhhhcceeeeeccccHHHHhccCCC
Confidence 344444444454444444444 3333344443331 2256778999999543 33 77899999999999976644
No 378
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=41.09 E-value=65 Score=26.67 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=17.3
Q ss_pred HHHHHHhCCCCccceEEEECCCCc
Q 021494 185 IKELTKYFDVQGIPCLVIIGPEGK 208 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~~G~ 208 (311)
+...+..+||.++|+++| +|+
T Consensus 156 ~~~~a~~~gv~GvP~~vv---~g~ 176 (193)
T PF01323_consen 156 DTAEARQLGVFGVPTFVV---NGK 176 (193)
T ss_dssp HHHHHHHTTCSSSSEEEE---TTT
T ss_pred HHHHHHHcCCcccCEEEE---CCE
Confidence 446678899999999998 566
No 379
>PRK05978 hypothetical protein; Provisional
Probab=41.07 E-value=16 Score=30.00 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=19.7
Q ss_pred CcccccccCCCcce-----eEeCCCCCCCcccc
Q 021494 271 PFICCDCDEQGSGW-----AYQCLECGYEVHPK 298 (311)
Q Consensus 271 ~~~Cd~C~~~g~~w-----~~~C~~c~~~~h~~ 298 (311)
.-.||.|++-.-+= .-.|..|+.|++..
T Consensus 33 ~grCP~CG~G~LF~g~Lkv~~~C~~CG~~~~~~ 65 (148)
T PRK05978 33 RGRCPACGEGKLFRAFLKPVDHCAACGEDFTHH 65 (148)
T ss_pred cCcCCCCCCCcccccccccCCCccccCCccccC
Confidence 45799999855422 34599998777753
No 380
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=40.72 E-value=18 Score=30.44 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=22.3
Q ss_pred HHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 14 KKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
..++.+.|+|.++|+.+++++ +|++.
T Consensus 131 ~~~~~~~~gv~~~P~t~vid~---~G~i~ 156 (185)
T PRK15412 131 DGMLGLDLGVYGAPETFLIDG---NGIIR 156 (185)
T ss_pred CccHHHhcCCCcCCeEEEECC---CceEE
Confidence 356788999999999999997 88775
No 381
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=40.70 E-value=42 Score=21.88 Aligned_cols=18 Identities=6% Similarity=-0.191 Sum_probs=12.8
Q ss_pred EEecCCChhhHhhhHHHH
Q 021494 115 YFSARWCIPCEKFMPKLL 132 (311)
Q Consensus 115 ~F~a~wC~~C~~~~p~l~ 132 (311)
.|+.++|+.|.+..-.|.
T Consensus 3 ly~~~~~~~~~~~~~~l~ 20 (71)
T cd00570 3 LYYFPGSPRSLRVRLALE 20 (71)
T ss_pred EEeCCCCccHHHHHHHHH
Confidence 456688999987666554
No 382
>KOG3116 consensus Predicted C3H1-type Zn-finger protein [General function prediction only]
Probab=40.33 E-value=9 Score=31.19 Aligned_cols=24 Identities=29% Similarity=0.789 Sum_probs=19.6
Q ss_pred ccccccCCCcceeEeCCCCCCCccc
Q 021494 273 ICCDCDEQGSGWAYQCLECGYEVHP 297 (311)
Q Consensus 273 ~Cd~C~~~g~~w~~~C~~c~~~~h~ 297 (311)
.|..|-..|+ |.|-|+.-.-.||-
T Consensus 29 rCQKClq~GH-WtYECk~kRkYihR 52 (177)
T KOG3116|consen 29 RCQKCLQAGH-WTYECKNKRKYIHR 52 (177)
T ss_pred hHHHHHhhcc-ceeeecCceeeecC
Confidence 6777777765 99999999888885
No 383
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=39.99 E-value=21 Score=31.34 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=21.2
Q ss_pred CEEEEEEecCCChhhHhhhHHHHHHHH
Q 021494 110 KTVGLYFSARWCIPCEKFMPKLLSIYQ 136 (311)
Q Consensus 110 k~vll~F~a~wC~~C~~~~p~l~~l~~ 136 (311)
+...+.|..+.|++|++....+...++
T Consensus 119 ~~~~~~f~~~~~~~~~~a~~~~~~~~~ 145 (244)
T COG1651 119 VLREFPFLDPACPYCRRAAQAARCAAD 145 (244)
T ss_pred EEEEeecCCCCcHHHHHHHHHHHHhcc
Confidence 456777888999999998887766555
No 384
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=39.73 E-value=81 Score=23.88 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=15.5
Q ss_pred EecCCChhhHhhhHHHHHH
Q 021494 116 FSARWCIPCEKFMPKLLSI 134 (311)
Q Consensus 116 F~a~wC~~C~~~~p~l~~l 134 (311)
||-.+|+.|......+...
T Consensus 2 ~YDg~C~lC~~~~~~l~~~ 20 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR 20 (114)
T ss_pred EECCCCHhHHHHHHHHHhc
Confidence 5678999999998877654
No 385
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=39.70 E-value=21 Score=27.27 Aligned_cols=32 Identities=28% Similarity=0.720 Sum_probs=27.2
Q ss_pred CCcccccccCCCcceeEeCCC--CCCCcccccccc
Q 021494 270 GPFICCDCDEQGSGWAYQCLE--CGYEVHPKCVRA 302 (311)
Q Consensus 270 ~~~~Cd~C~~~g~~w~~~C~~--c~~~~h~~c~~~ 302 (311)
....|..|++. .|-.-.|.. |+--+|+.||..
T Consensus 54 ~~~~C~iC~~~-~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS-GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC-CceeEEcCCCCCCcCCCHHHHHH
Confidence 46789999998 455778888 999999999987
No 386
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=39.67 E-value=19 Score=29.30 Aligned_cols=30 Identities=20% Similarity=0.621 Sum_probs=20.7
Q ss_pred CCCCcccccccCCCc-----cee-----EeCCCCCCCccc
Q 021494 268 GGGPFICCDCDEQGS-----GWA-----YQCLECGYEVHP 297 (311)
Q Consensus 268 ~~~~~~Cd~C~~~g~-----~w~-----~~C~~c~~~~h~ 297 (311)
+..-+.|+.|+..-. ... +.|+.|+-.|-.
T Consensus 96 ~~~~Y~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 96 NNAYYKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CCcEEECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 345688999986443 233 889999877654
No 387
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=39.54 E-value=25 Score=27.30 Aligned_cols=24 Identities=29% Similarity=0.660 Sum_probs=19.5
Q ss_pred HHHhhcccCC--CCeeEEecCCCCCCcee
Q 021494 16 ALNRKFDIEG--IPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 16 ~l~~~~~i~~--~P~l~~~~~~~~~g~~~ 42 (311)
.+...|++.| +|+++++++ +|+++
T Consensus 65 ~~~~~~~~~g~~vPt~~f~~~---~Gk~~ 90 (117)
T cd02959 65 PKDEEFSPDGGYIPRILFLDP---SGDVH 90 (117)
T ss_pred chhhhcccCCCccceEEEECC---CCCCc
Confidence 3456889987 999999997 88775
No 388
>PRK12496 hypothetical protein; Provisional
Probab=39.53 E-value=15 Score=30.64 Aligned_cols=20 Identities=30% Similarity=0.770 Sum_probs=16.2
Q ss_pred ceeEeCCCCC--C------Ccccccccc
Q 021494 283 GWAYQCLECG--Y------EVHPKCVRA 302 (311)
Q Consensus 283 ~w~~~C~~c~--~------~~h~~c~~~ 302 (311)
-|.|+|.-|+ | |.+|.|...
T Consensus 125 ~w~~~C~gC~~~~~~~~~~~~C~~CG~~ 152 (164)
T PRK12496 125 KWRKVCKGCKKKYPEDYPDDVCEICGSP 152 (164)
T ss_pred eeeEECCCCCccccCCCCCCcCCCCCCh
Confidence 5999999997 7 458888765
No 389
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=38.86 E-value=12 Score=26.55 Aligned_cols=26 Identities=31% Similarity=1.012 Sum_probs=12.6
Q ss_pred ccccccCCCcce---eEeCCCCC--CCccccc
Q 021494 273 ICCDCDEQGSGW---AYQCLECG--YEVHPKC 299 (311)
Q Consensus 273 ~Cd~C~~~g~~w---~~~C~~c~--~~~h~~c 299 (311)
.||.|+.. -.| .|.|..|+ |.+++.|
T Consensus 3 ~CP~C~~~-L~~~~~~~~C~~C~~~~~~~a~C 33 (70)
T PF07191_consen 3 TCPKCQQE-LEWQGGHYHCEACQKDYKKEAFC 33 (70)
T ss_dssp B-SSS-SB-EEEETTEEEETTT--EEEEEEE-
T ss_pred cCCCCCCc-cEEeCCEEECccccccceecccC
Confidence 46666665 333 56677774 5555444
No 390
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=38.80 E-value=13 Score=30.49 Aligned_cols=30 Identities=27% Similarity=0.581 Sum_probs=21.3
Q ss_pred cCCCCCCcccccccCCCcce----eEeCCCCCCC
Q 021494 265 EGTGGGPFICCDCDEQGSGW----AYQCLECGYE 294 (311)
Q Consensus 265 ~~~~~~~~~Cd~C~~~g~~w----~~~C~~c~~~ 294 (311)
+..|.|.++|..|+..-..- ---|+.|+.+
T Consensus 106 E~~g~G~l~C~~Cg~~~~~~~~~~l~~Cp~C~~~ 139 (146)
T PF07295_consen 106 EVVGPGTLVCENCGHEVELTHPERLPPCPKCGHT 139 (146)
T ss_pred cEecCceEecccCCCEEEecCCCcCCCCCCCCCC
Confidence 34789999999999866432 2338888643
No 391
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=38.51 E-value=84 Score=27.14 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=31.1
Q ss_pred HHHHHhCCCCccceEEEECCCCcEEEeccchhhhcccccCCCCcHHHHHHHHHHH
Q 021494 186 KELTKYFDVQGIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEKQM 240 (311)
Q Consensus 186 ~~l~~~~~v~~~Pt~vlid~~G~iv~~~g~~~~~~~g~~~~p~~~~~i~~L~~~~ 240 (311)
..+.+++++.++||+.+.+ +|+...-. .| .-|+..++.+..|.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~-ng~~~~l~-------~g-~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALER-NGTMYVLG-------TG-AYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeee-CCceEecc-------CC-cccCCcHHHHHHHHHHH
Confidence 5788999999999999995 88775441 12 23455566666655543
No 392
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=37.87 E-value=1.1e+02 Score=26.35 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=23.6
Q ss_pred EEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecC
Q 021494 115 YFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD 160 (311)
Q Consensus 115 ~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d 160 (311)
.|.+-.|..|......|.++.++ . ++..++..+|
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~-~-----------~Vi~LafHVD 37 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR-P-----------DVIALAFHVD 37 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH-T-----------SSEEEEEE-S
T ss_pred EecCCCCCCCcHHHHHHHHhhcC-C-----------CEEEEEecCC
Confidence 47788999999999999888876 1 4667777776
No 393
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.53 E-value=43 Score=27.45 Aligned_cols=101 Identities=13% Similarity=0.137 Sum_probs=46.9
Q ss_pred HHHHhhcccCCCCeeEEecCCCCCCceeechhhHHHhhhccccCcccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEe
Q 021494 15 KALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPFTKEKLEELQKEEKEKHERQTLINLLTNHDRGYLL 94 (311)
Q Consensus 15 ~~l~~~~~i~~~P~l~~~~~~~~~g~~~~~~~~~~v~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~pdf~l 94 (311)
.+-++.|.|.|+-.+.-+++ +-.++....-......|.+.-|-..+.+....-...-..--..++..-|.. | +.+
T Consensus 35 aR~artYeikgYyiV~pidA---Q~~~~~r~i~yW~~g~G~~yNp~R~e~~~lv~l~~~le~ViEdIEk~eG~r-P-Li~ 109 (190)
T COG4752 35 ARPARTYEIKGYYIVQPIDA---QRIVIQRQINYWLSGEGRKYNPTRYEIVQLVRLAYTLEEVIEDIEKEEGRR-P-LIV 109 (190)
T ss_pred cccccceeeccEEEEeecHH---HHHHHHHHHHHHhcccCCcCCcCHHHHHHHHhHHHHHHHHHHHHHhhcCCC-c-eEE
Confidence 46678899999887777775 444443333333333333333333222222111111111111222222332 2 122
Q ss_pred eCC----CCceeecccc------CCCEEEEEEecCCC
Q 021494 95 GHP----PDEKVPVSSL------VGKTVGLYFSARWC 121 (311)
Q Consensus 95 ~~~----g~~~v~l~~~------~gk~vll~F~a~wC 121 (311)
..+ .. .++.+.+ ..|++|+.|..-|-
T Consensus 110 ~TsAr~~~N-~isy~~lr~~I~e~dkp~LilfGTGwG 145 (190)
T COG4752 110 GTSARTYPN-TISYSWLRNEIQERDKPWLILFGTGWG 145 (190)
T ss_pred eccccccCC-cccHHHHHHHHhhcCCcEEEEecCCCC
Confidence 222 12 4555444 45899999998886
No 395
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=37.21 E-value=27 Score=22.47 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=24.0
Q ss_pred cccccCCC-cceeEeCCCCCCCccccccccc
Q 021494 274 CCDCDEQG-SGWAYQCLECGYEVHPKCVRAV 303 (311)
Q Consensus 274 Cd~C~~~g-~~w~~~C~~c~~~~h~~c~~~~ 303 (311)
|..|+..+ ....-.|..|+--.|..|+.-.
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVGPP 32 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTSTSS
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCCCC
Confidence 66777744 4778899999999999998764
No 396
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=36.97 E-value=31 Score=26.34 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=14.9
Q ss_pred EEEecCCChhhHhhhHHHH
Q 021494 114 LYFSARWCIPCEKFMPKLL 132 (311)
Q Consensus 114 l~F~a~wC~~C~~~~p~l~ 132 (311)
..|+.++|+.|++....|.
T Consensus 2 ~iy~~~~C~~crka~~~L~ 20 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLE 20 (105)
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 4577899999998776654
No 397
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=36.40 E-value=23 Score=38.64 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=23.0
Q ss_pred cccccccCCCcceeEeCCCCCCCc-----ccccccccc
Q 021494 272 FICCDCDEQGSGWAYQCLECGYEV-----HPKCVRAVD 304 (311)
Q Consensus 272 ~~Cd~C~~~g~~w~~~C~~c~~~~-----h~~c~~~~~ 304 (311)
+.|+.|+...+.. .|+.|+-.+ ||+|.....
T Consensus 668 rkCPkCG~~t~~~--fCP~CGs~te~vy~CPsCGaev~ 703 (1337)
T PRK14714 668 RRCPSCGTETYEN--RCPDCGTHTEPVYVCPDCGAEVP 703 (1337)
T ss_pred EECCCCCCccccc--cCcccCCcCCCceeCccCCCccC
Confidence 8999999977643 888887554 777776543
No 398
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=36.13 E-value=12 Score=29.21 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=24.1
Q ss_pred CCcccccccCCCc--ceeEeCCCCC-CCcccccccc
Q 021494 270 GPFICCDCDEQGS--GWAYQCLECG-YEVHPKCVRA 302 (311)
Q Consensus 270 ~~~~Cd~C~~~g~--~w~~~C~~c~-~~~h~~c~~~ 302 (311)
...+|..|+.... .+.+.|+.|+ ++++.....+
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~~G~E 104 (113)
T PRK12380 69 AQAWCWDCSQVVEIHQHDAQCPHCHGERLRVDTGDS 104 (113)
T ss_pred cEEEcccCCCEEecCCcCccCcCCCCCCcEEccCCe
Confidence 4579999997654 3566799996 8887765544
No 399
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=35.91 E-value=1.7e+02 Score=26.56 Aligned_cols=110 Identities=22% Similarity=0.169 Sum_probs=45.2
Q ss_pred CCCCCeEe-eCCCCceeeccccC--CCEEEEEEecCCChhhHhhhHH-HHHHHHHHHhhhhhcCCCCCCeEEEEEecCCC
Q 021494 87 NHDRGYLL-GHPPDEKVPVSSLV--GKTVGLYFSARWCIPCEKFMPK-LLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD 162 (311)
Q Consensus 87 ~~~pdf~l-~~~g~~~v~l~~~~--gk~vll~F~a~wC~~C~~~~p~-l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~ 162 (311)
...|-|.+ |.+|. ++-.+.-. ++.+.+.|.. +..+.. |.++...-.+. ..++.|+.|+++.-
T Consensus 73 ~~VPVF~itn~~G~-p~l~~~~~~~~~~v~~~F~s------~~dA~~~L~~lk~~~p~~-------~~~~kV~pvsL~~v 138 (274)
T PF04278_consen 73 AGVPVFTITNSQGE-PVLVSGPDQGGKSVGLFFFS------QQDAEAFLAQLKKSNPEL-------ASGAKVVPVSLGKV 138 (274)
T ss_dssp TTSEEEEEE-TT---B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHH-------HTT-EEEEEEHHHH
T ss_pred cCceEEEEECCCCC-EEEeccCCCCCceEEEEEec------HHHHHHHHHHHhhhCccc-------cCceEEEEecHHHH
Confidence 34688999 99998 88776665 6777777753 233332 33333321111 23789999998654
Q ss_pred HHHHHHHHhcCCCcccccCchhH-----HHHHHhCCC-----CccceEEEECCCCcEE
Q 021494 163 QTSFESYFGTMPWLALPFGDPTI-----KELTKYFDV-----QGIPCLVIIGPEGKTV 210 (311)
Q Consensus 163 ~~~~~~~~~~~~~~~~p~~~d~~-----~~l~~~~~v-----~~~Pt~vlid~~G~iv 210 (311)
.+-.++.-.+..-+.|.+..+.. ..+.+.-|. .++|-++.-+.+|-+.
T Consensus 139 Y~l~~~~~~k~~~~~F~~vP~~~qV~~A~~ll~~~g~~~~~f~GVPvF~~~~~~~~Lt 196 (274)
T PF04278_consen 139 YQLAQENKKKPEGLQFRFVPDPKQVEAALELLKKQGQKVKQFQGVPVFYAEGGKGYLT 196 (274)
T ss_dssp HHHHHHTTT-TT-EEEEEE--HHHHHHHHHHHHTTT---S---S-EEEEEESST-B-E
T ss_pred HHHHHHhhcCCcCceEEEcCCHHHHHHHHHHHHhcCCCcccCCCeEEEEEcCCCceEE
Confidence 33222222222224444433311 133223333 4789776665444333
No 400
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=35.81 E-value=77 Score=22.12 Aligned_cols=45 Identities=16% Similarity=0.192 Sum_probs=30.5
Q ss_pred eCCCCceeeccccCCCEEEEEEecCCChhhHhhhHHHHH-HHHHHHhh
Q 021494 95 GHPPDEKVPVSSLVGKTVGLYFSARWCIPCEKFMPKLLS-IYQKIKQN 141 (311)
Q Consensus 95 ~~~g~~~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~-l~~~~~~~ 141 (311)
..+|. .+.+.++.+..|.|.|... |..|....-.+.. +.+.++++
T Consensus 13 ~~dGG-dv~lv~v~~~~V~V~l~Ga-C~gC~~s~~Tl~~~Ie~~L~~~ 58 (68)
T PF01106_consen 13 QSDGG-DVELVDVDDGVVYVRLTGA-CSGCPSSDMTLKQGIEQALREA 58 (68)
T ss_dssp HHTTE-EEEEEEEETTEEEEEEESS-CCSSCCHHHHHHHHHHHHHHHH
T ss_pred HhcCC-cEEEEEecCCEEEEEEEeC-CCCCCCHHHHHHHHHHHHHHHH
Confidence 45777 8999999888888888654 6677666666633 33445443
No 401
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=35.53 E-value=1.1e+02 Score=23.56 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=26.1
Q ss_pred EEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCC---HHHHHHHHh
Q 021494 114 LYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRD---QTSFESYFG 171 (311)
Q Consensus 114 l~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~---~~~~~~~~~ 171 (311)
..|+.++|+.|++....|.+ + ++.+..+.+..+ .+++.++++
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~---------gi~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------H---------QIPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------C---------CCceEEEecCCCcchHHHHHHHHH
Confidence 34667999999987765543 2 455666666443 445554444
No 402
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=35.48 E-value=30 Score=23.65 Aligned_cols=25 Identities=36% Similarity=1.092 Sum_probs=18.1
Q ss_pred ccccccCCCc--cee------EeCCCCCCCccc
Q 021494 273 ICCDCDEQGS--GWA------YQCLECGYEVHP 297 (311)
Q Consensus 273 ~Cd~C~~~g~--~w~------~~C~~c~~~~h~ 297 (311)
.||.|+.+.. -|. --|-.|+|--..
T Consensus 11 ~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~~~~ 43 (59)
T TIGR02443 11 VCPACSAQDTLAMWKENNIELVECVECGYQEQQ 43 (59)
T ss_pred cCCCCcCccEEEEEEeCCceEEEeccCCCcccc
Confidence 7999999886 332 229999986543
No 403
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=35.46 E-value=15 Score=35.32 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=48.6
Q ss_pred HHHHHHHHhccCCCccccc-CccccceeeecCCCCCCcccccccCCCc--ceeEeCCCCCCCcccccccc
Q 021494 236 LEKQMEEEAKNLPRSEFHI-GHRHELNLVSEGTGGGPFICCDCDEQGS--GWAYQCLECGYEVHPKCVRA 302 (311)
Q Consensus 236 L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Cd~C~~~g~--~w~~~C~~c~~~~h~~c~~~ 302 (311)
|...+..+.+.+|...... ..+++...+.|.++.....|+.|..... -=...|.-||-=++-+|..-
T Consensus 144 LiiRl~rL~~~~~t~~d~~k~k~~EqsvVpW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~ 213 (505)
T KOG1842|consen 144 LIIRLKRLEEGLPTEKDSVKRKRLEQSVVPWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKF 213 (505)
T ss_pred HHHHHHHHHccCccccchHHHHHHHhccccccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHh
Confidence 4444556667777532222 2267888889999999999999998654 33667999998888888754
No 404
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=35.23 E-value=26 Score=34.97 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.5
Q ss_pred HHHHHHHhhcccCCCCeeEEecCC
Q 021494 12 ETKKALNRKFDIEGIPCLVVLQPY 35 (311)
Q Consensus 12 ~~~~~l~~~~~i~~~P~l~~~~~~ 35 (311)
+++.+|||.|+|+++|++.++.+.
T Consensus 103 ~~N~~lCRef~V~~~Ptlryf~~~ 126 (606)
T KOG1731|consen 103 EENVKLCREFSVSGYPTLRYFPPD 126 (606)
T ss_pred hhhhhhHhhcCCCCCceeeecCCc
Confidence 367899999999999999999863
No 405
>PRK11032 hypothetical protein; Provisional
Probab=34.58 E-value=21 Score=29.66 Aligned_cols=29 Identities=24% Similarity=0.585 Sum_probs=21.2
Q ss_pred CCCCCCcccccccCCCcce----eEeCCCCCCC
Q 021494 266 GTGGGPFICCDCDEQGSGW----AYQCLECGYE 294 (311)
Q Consensus 266 ~~~~~~~~Cd~C~~~g~~w----~~~C~~c~~~ 294 (311)
-.|-|.++|..|+..-.+- ---|+.|+-+
T Consensus 119 vvg~G~LvC~~Cg~~~~~~~p~~i~pCp~C~~~ 151 (160)
T PRK11032 119 VVGLGNLVCEKCHHHLAFYTPEVLPLCPKCGHD 151 (160)
T ss_pred eeecceEEecCCCCEEEecCCCcCCCCCCCCCC
Confidence 3789999999999866533 2339989743
No 406
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.57 E-value=7.1 Score=37.59 Aligned_cols=36 Identities=33% Similarity=0.653 Sum_probs=29.8
Q ss_pred CCCCcccccccCCCcceeEe---CCCCCCCccccccccc
Q 021494 268 GGGPFICCDCDEQGSGWAYQ---CLECGYEVHPKCVRAV 303 (311)
Q Consensus 268 ~~~~~~Cd~C~~~g~~w~~~---C~~c~~~~h~~c~~~~ 303 (311)
-..+-.||+|+-+-++-..+ |.-|+..+|.+|...+
T Consensus 118 YssPTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~nV 156 (683)
T KOG0696|consen 118 YSSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVENV 156 (683)
T ss_pred cCCCchhhhHHHHHHHHHhcccccccccchHHHHHhhcC
Confidence 34567899999988877665 9999999999998764
No 407
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=34.09 E-value=30 Score=31.44 Aligned_cols=28 Identities=36% Similarity=0.852 Sum_probs=21.6
Q ss_pred CCcccccccCCCc----ceeEeCCCCCCCccc
Q 021494 270 GPFICCDCDEQGS----GWAYQCLECGYEVHP 297 (311)
Q Consensus 270 ~~~~Cd~C~~~g~----~w~~~C~~c~~~~h~ 297 (311)
.-..|++|+..-. +|+..|..|+...-|
T Consensus 110 ~~RFCg~CG~~~~~~~~g~~~~C~~cg~~~fP 141 (279)
T COG2816 110 SHRFCGRCGTKTYPREGGWARVCPKCGHEHFP 141 (279)
T ss_pred hCcCCCCCCCcCccccCceeeeCCCCCCccCC
Confidence 3468999987432 999999999966555
No 408
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=33.42 E-value=33 Score=24.41 Aligned_cols=25 Identities=32% Similarity=1.003 Sum_probs=17.8
Q ss_pred ccccccCCCc--ceeE------eCCCCCCCccc
Q 021494 273 ICCDCDEQGS--GWAY------QCLECGYEVHP 297 (311)
Q Consensus 273 ~Cd~C~~~g~--~w~~------~C~~c~~~~h~ 297 (311)
.||.|+.+.. -|.- .|-.|+|--..
T Consensus 10 ~CP~C~~~D~i~~~~e~~ve~vECV~CGy~e~~ 42 (71)
T PF09526_consen 10 VCPKCQAMDTIMMWRENGVEYVECVECGYTERQ 42 (71)
T ss_pred cCCCCcCccEEEEEEeCCceEEEecCCCCeecc
Confidence 7999999885 2311 29999986543
No 409
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=33.30 E-value=24 Score=22.50 Aligned_cols=24 Identities=33% Similarity=1.001 Sum_probs=16.1
Q ss_pred cccccccCCCc---ceeEeCCCCCCCc
Q 021494 272 FICCDCDEQGS---GWAYQCLECGYEV 295 (311)
Q Consensus 272 ~~Cd~C~~~g~---~w~~~C~~c~~~~ 295 (311)
|.|..|+..-. .=.-+|+.|++.+
T Consensus 3 Y~C~~Cg~~~~~~~~~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSKDVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCCCceECCCCCceE
Confidence 67788877543 3356788888754
No 410
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=32.70 E-value=34 Score=28.11 Aligned_cols=26 Identities=8% Similarity=0.333 Sum_probs=22.7
Q ss_pred HHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 14 KKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
..++.+.|+|.++|+++++++ +|+++
T Consensus 98 ~~~~~~~~~v~~~P~~~lid~---~G~v~ 123 (171)
T cd02969 98 TQEVAKAYGAACTPDFFLFDP---DGKLV 123 (171)
T ss_pred chHHHHHcCCCcCCcEEEECC---CCeEE
Confidence 357889999999999999997 88876
No 411
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=32.34 E-value=34 Score=26.26 Aligned_cols=20 Identities=15% Similarity=0.585 Sum_probs=18.7
Q ss_pred HHHHHhhcccCCCCeeEEec
Q 021494 14 KKALNRKFDIEGIPCLVVLQ 33 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l~~~~ 33 (311)
...++..|+|..+||++++.
T Consensus 63 ~~~~~~~~~V~~~PTf~f~k 82 (106)
T KOG0907|consen 63 LEEVAKEFNVKAMPTFVFYK 82 (106)
T ss_pred CHhHHHhcCceEeeEEEEEE
Confidence 68899999999999999987
No 412
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=32.17 E-value=36 Score=30.82 Aligned_cols=20 Identities=15% Similarity=0.488 Sum_probs=18.1
Q ss_pred HHHHhhcccCCCCeeEEecC
Q 021494 15 KALNRKFDIEGIPCLVVLQP 34 (311)
Q Consensus 15 ~~l~~~~~i~~~P~l~~~~~ 34 (311)
..+.++|+|.++|+++++++
T Consensus 219 ~~la~~~gV~~vPtl~Lv~~ 238 (271)
T TIGR02740 219 AGQAQQLKIRTVPAVFLADP 238 (271)
T ss_pred HHHHHHcCCCcCCeEEEEEC
Confidence 45889999999999999996
No 413
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.90 E-value=13 Score=35.79 Aligned_cols=34 Identities=29% Similarity=0.773 Sum_probs=27.0
Q ss_pred CCCcccccccCCCcce---eEeCCCCCCCcccccccc
Q 021494 269 GGPFICCDCDEQGSGW---AYQCLECGYEVHPKCVRA 302 (311)
Q Consensus 269 ~~~~~Cd~C~~~g~~w---~~~C~~c~~~~h~~c~~~ 302 (311)
+.+-.|.||....-+. -++|-.|.|-+|.+|-.-
T Consensus 54 KqPTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChef 90 (683)
T KOG0696|consen 54 KQPTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEF 90 (683)
T ss_pred cCCchhhhhhhheeccccCceeeeEEeehhhhhhcce
Confidence 4566899999865433 678999999999999754
No 414
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=31.73 E-value=29 Score=32.04 Aligned_cols=30 Identities=20% Similarity=0.422 Sum_probs=25.6
Q ss_pred CHHHHHHHHhhcccCCCCeeEEecCCCCCCceee
Q 021494 10 DLETKKALNRKFDIEGIPCLVVLQPYDDKDDATL 43 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~~ 43 (311)
|++++..|+.+|.|.-+||+.++. +|..++
T Consensus 57 Dcd~e~~ia~ky~I~KyPTlKvfr----nG~~~~ 86 (375)
T KOG0912|consen 57 DCDKEDDIADKYHINKYPTLKVFR----NGEMMK 86 (375)
T ss_pred ccchhhHHhhhhccccCceeeeee----ccchhh
Confidence 677888999999999999999987 666654
No 415
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=31.61 E-value=48 Score=23.96 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=17.9
Q ss_pred ccceEEEECCCCcEEEeccchhhhcccccCCCCcHHHHHHHHH
Q 021494 196 GIPCLVIIGPEGKTVTKQGRNLINLYQENAYPFTEAKLEFLEK 238 (311)
Q Consensus 196 ~~Pt~vlid~~G~iv~~~g~~~~~~~g~~~~p~~~~~i~~L~~ 238 (311)
+-|+++|+|.+|+++.+.. . -.|+.+.|++++.
T Consensus 41 ~~P~L~l~d~~g~~~E~i~-----i-----~~w~~d~i~efL~ 73 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERIN-----I-----EKWKTDEIEEFLN 73 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-----------SSSSHCHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEEEE-----c-----ccCCHHHHHHHHH
Confidence 4599999999999887621 1 2466666666654
No 416
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=31.35 E-value=43 Score=28.52 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=22.2
Q ss_pred HHHHHhhcccCCCCee-EEecCCCCCCcee
Q 021494 14 KKALNRKFDIEGIPCL-VVLQPYDDKDDAT 42 (311)
Q Consensus 14 ~~~l~~~~~i~~~P~l-~~~~~~~~~g~~~ 42 (311)
+.++...|++.++|+. +++++ +|++.
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk---~GkVv 160 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDK---TGKVK 160 (184)
T ss_pred cchHHHhcCCCCCCceEEEECC---CCcEE
Confidence 4578889999999998 79997 99875
No 417
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=31.27 E-value=46 Score=33.57 Aligned_cols=27 Identities=15% Similarity=0.486 Sum_probs=23.0
Q ss_pred HHHHHHhhcccCCCCeeEEecCCCCCCcee
Q 021494 13 TKKALNRKFDIEGIPCLVVLQPYDDKDDAT 42 (311)
Q Consensus 13 ~~~~l~~~~~i~~~P~l~~~~~~~~~g~~~ 42 (311)
..+.+.++|++.++|+++++++ +|+.+
T Consensus 522 ~~~~l~~~~~v~g~Pt~~~~~~---~G~~i 548 (571)
T PRK00293 522 EDVALLKHYNVLGLPTILFFDA---QGQEI 548 (571)
T ss_pred hhHHHHHHcCCCCCCEEEEECC---CCCCc
Confidence 3578999999999999999997 77663
No 418
>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]
Probab=31.17 E-value=26 Score=27.43 Aligned_cols=23 Identities=30% Similarity=0.869 Sum_probs=18.4
Q ss_pred CCcccccccCCCc--ceeEeCCCCC
Q 021494 270 GPFICCDCDEQGS--GWAYQCLECG 292 (311)
Q Consensus 270 ~~~~Cd~C~~~g~--~w~~~C~~c~ 292 (311)
...+|..|+..-. .|.|.|+-|+
T Consensus 69 ~~~~C~~C~~~~~~e~~~~~CP~C~ 93 (115)
T COG0375 69 AECWCLDCGQEVELEELDYRCPKCG 93 (115)
T ss_pred cEEEeccCCCeecchhheeECCCCC
Confidence 4579999976543 8999999996
No 419
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=30.91 E-value=46 Score=26.33 Aligned_cols=28 Identities=18% Similarity=0.425 Sum_probs=23.7
Q ss_pred HHHHHHhhcccC---------CCCeeEEecCCCCCCceee
Q 021494 13 TKKALNRKFDIE---------GIPCLVVLQPYDDKDDATL 43 (311)
Q Consensus 13 ~~~~l~~~~~i~---------~~P~l~~~~~~~~~g~~~~ 43 (311)
....+.+.|++. ++|+.++++. +|+++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~---~G~V~~ 129 (146)
T PF08534_consen 93 PDGALAKALGVTIMEDPGNGFGIPTTFLIDK---DGKVVY 129 (146)
T ss_dssp TTSHHHHHTTCEEECCTTTTSSSSEEEEEET---TSBEEE
T ss_pred hHHHHHHHhCCccccccccCCeecEEEEEEC---CCEEEE
Confidence 346899999988 9999999997 898753
No 420
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=30.05 E-value=57 Score=27.95 Aligned_cols=21 Identities=19% Similarity=0.594 Sum_probs=16.7
Q ss_pred HHHHHhCCCCccceEEEECCCCcE
Q 021494 186 KELTKYFDVQGIPCLVIIGPEGKT 209 (311)
Q Consensus 186 ~~l~~~~~v~~~Pt~vlid~~G~i 209 (311)
....+.+||+++|+++| +|+.
T Consensus 157 ~~~a~~~gI~gtPtfiI---nGky 177 (207)
T PRK10954 157 EKAAADLQLRGVPAMFV---NGKY 177 (207)
T ss_pred HHHHHHcCCCCCCEEEE---CCEE
Confidence 46678899999999887 4554
No 421
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=29.96 E-value=33 Score=23.12 Aligned_cols=23 Identities=26% Similarity=0.767 Sum_probs=15.4
Q ss_pred cccccCCCc-ceeEeCCCCCCCcc
Q 021494 274 CCDCDEQGS-GWAYQCLECGYEVH 296 (311)
Q Consensus 274 Cd~C~~~g~-~w~~~C~~c~~~~h 296 (311)
|+.|..... .-.|-|+.|++-.|
T Consensus 2 Cpv~~~~~~~~v~~~Cp~cGipth 25 (55)
T PF13824_consen 2 CPVCKKDLPAHVNFECPDCGIPTH 25 (55)
T ss_pred CCCCccccccccCCcCCCCCCcCc
Confidence 666666544 44677888887776
No 422
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=29.95 E-value=50 Score=27.87 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.7
Q ss_pred HHHHhhcccCCCCeeEEecCCCCCCceee
Q 021494 15 KALNRKFDIEGIPCLVVLQPYDDKDDATL 43 (311)
Q Consensus 15 ~~l~~~~~i~~~P~l~~~~~~~~~g~~~~ 43 (311)
..+.+.|++.++|+.+++++ +|++..
T Consensus 136 ~~i~~~y~v~~~P~~~lID~---~G~I~~ 161 (189)
T TIGR02661 136 AEIGMAFQVGKIPYGVLLDQ---DGKIRA 161 (189)
T ss_pred hHHHHhccCCccceEEEECC---CCeEEE
Confidence 57889999999999999997 887753
No 423
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=29.88 E-value=33 Score=23.71 Aligned_cols=27 Identities=30% Similarity=0.892 Sum_probs=19.1
Q ss_pred ccccccCCC----cceeEeCCCCCCCccccc
Q 021494 273 ICCDCDEQG----SGWAYQCLECGYEVHPKC 299 (311)
Q Consensus 273 ~Cd~C~~~g----~~w~~~C~~c~~~~h~~c 299 (311)
.|+.|+... ....+.|+.|++-.|-+-
T Consensus 30 ~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD~ 60 (69)
T PF07282_consen 30 TCPRCGHRNKKRRSGRVFTCPNCGFEMDRDV 60 (69)
T ss_pred CccCcccccccccccceEEcCCCCCEECcHH
Confidence 466666533 466889999999877653
No 424
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=29.66 E-value=21 Score=20.86 Aligned_cols=21 Identities=38% Similarity=1.096 Sum_probs=11.4
Q ss_pred ccccccCCC----cceeEeCCCCCC
Q 021494 273 ICCDCDEQG----SGWAYQCLECGY 293 (311)
Q Consensus 273 ~Cd~C~~~g----~~w~~~C~~c~~ 293 (311)
.|+.|+-.- .+|+-.|+.|+.
T Consensus 5 fC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 5 FCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp B-TTT--BEEE-SSSS-EEESSSS-
T ss_pred ccCcCCccccCCCCcCEeECCCCcC
Confidence 466666522 389999999974
No 425
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=29.48 E-value=1.8e+02 Score=19.58 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=11.5
Q ss_pred EecCCChhhHhhhHHH
Q 021494 116 FSARWCIPCEKFMPKL 131 (311)
Q Consensus 116 F~a~wC~~C~~~~p~l 131 (311)
++..+|++|.+..-.|
T Consensus 4 y~~~~~p~~~rvr~~L 19 (71)
T cd03037 4 YIYEHCPFCVKARMIA 19 (71)
T ss_pred EecCCCcHhHHHHHHH
Confidence 4567899998765544
No 426
>PRK14873 primosome assembly protein PriA; Provisional
Probab=29.03 E-value=2.2e+02 Score=29.36 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=8.4
Q ss_pred CccceEEEECCC
Q 021494 195 QGIPCLVIIGPE 206 (311)
Q Consensus 195 ~~~Pt~vlid~~ 206 (311)
..+|.+-++|..
T Consensus 328 ~~~P~v~~vd~~ 339 (665)
T PRK14873 328 ARAPRVRALGDS 339 (665)
T ss_pred CCCCeEEEEeCc
Confidence 346888888754
No 427
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=28.67 E-value=41 Score=26.38 Aligned_cols=21 Identities=14% Similarity=0.404 Sum_probs=18.4
Q ss_pred HHHHHhhcccC-CCCeeEEecC
Q 021494 14 KKALNRKFDIE-GIPCLVVLQP 34 (311)
Q Consensus 14 ~~~l~~~~~i~-~~P~l~~~~~ 34 (311)
+..+...|+|. ++||++++..
T Consensus 78 ~~~~~~~~~I~~~iPT~~~~~~ 99 (119)
T cd02952 78 NNPFRTDPKLTTGVPTLLRWKT 99 (119)
T ss_pred chhhHhccCcccCCCEEEEEcC
Confidence 46889999998 9999999973
No 428
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=28.63 E-value=2.2e+02 Score=20.38 Aligned_cols=28 Identities=7% Similarity=-0.033 Sum_probs=16.2
Q ss_pred CCEEEEEEecCCChhhHhhhHHHHHHHHHHH
Q 021494 109 GKTVGLYFSARWCIPCEKFMPKLLSIYQKIK 139 (311)
Q Consensus 109 gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~ 139 (311)
.++++|-|+..++. .....+.++++.++
T Consensus 17 ~~~~vvg~f~~~~~---~~~~~f~~~A~~~r 44 (97)
T cd02981 17 DDVVVVGFFKDEES---EEYKTFEKVAESLR 44 (97)
T ss_pred CCeEEEEEECCCCc---HHHHHHHHHHHhcc
Confidence 35677777777665 34444555555554
No 429
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=28.53 E-value=1.8e+02 Score=23.60 Aligned_cols=68 Identities=12% Similarity=0.082 Sum_probs=42.8
Q ss_pred CEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcccccCchhHHHHH
Q 021494 110 KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLALPFGDPTIKELT 189 (311)
Q Consensus 110 k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~~p~~~d~~~~l~ 189 (311)
|+-.+.+|-.-|+.|-.....|.+.-. ...+++..+. .+. ...+.
T Consensus 7 ~p~~vvlyDG~C~lC~~~vrfLi~~D~------------~~~i~f~~~q--~e~---------------------g~~~l 51 (137)
T COG3011 7 KPDLVVLYDGVCPLCDGWVRFLIRRDQ------------GGRIRFAALQ--SEP---------------------GQALL 51 (137)
T ss_pred CCCEEEEECCcchhHHHHHHHHHHhcc------------CCcEEEEecc--Cch---------------------hhhHH
Confidence 556667788899999997766544211 2345555544 333 34666
Q ss_pred HhCCCCcc-ceEEEECCCCcEEEe
Q 021494 190 KYFDVQGI-PCLVIIGPEGKTVTK 212 (311)
Q Consensus 190 ~~~~v~~~-Pt~vlid~~G~iv~~ 212 (311)
+..++..- +.+++++.+|++...
T Consensus 52 ~~~~l~~~~~~s~~~~~~g~~~~~ 75 (137)
T COG3011 52 EAAGLDPEDVDSVLLVEAGQLLVG 75 (137)
T ss_pred hhcCCChhhhheeeEecCCceEec
Confidence 77776544 566777788887655
No 430
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=28.29 E-value=26 Score=27.47 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=19.1
Q ss_pred CCcccccccCCCc--ceeEe-CCCCC-CCcc
Q 021494 270 GPFICCDCDEQGS--GWAYQ-CLECG-YEVH 296 (311)
Q Consensus 270 ~~~~Cd~C~~~g~--~w~~~-C~~c~-~~~h 296 (311)
....|..|+...+ .+.|. |+.|+ +++.
T Consensus 70 ~~~~C~~Cg~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 70 VELECKDCSHVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred CEEEhhhCCCccccCCccCCcCcCCCCCceE
Confidence 4579999997664 35565 99996 5543
No 431
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=27.65 E-value=80 Score=26.17 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=18.7
Q ss_pred HHHHHHhCCCCccceEEEECCCC
Q 021494 185 IKELTKYFDVQGIPCLVIIGPEG 207 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~~G 207 (311)
+...+..+||.++|+++|.|.+.
T Consensus 158 ~~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 158 DQKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHcCCCccCEEEEEeCCe
Confidence 34667789999999999998764
No 432
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=27.50 E-value=37 Score=22.32 Aligned_cols=25 Identities=24% Similarity=0.606 Sum_probs=17.9
Q ss_pred CCcccccccC---CC-cceeEeCCCCCCC
Q 021494 270 GPFICCDCDE---QG-SGWAYQCLECGYE 294 (311)
Q Consensus 270 ~~~~Cd~C~~---~g-~~w~~~C~~c~~~ 294 (311)
....|+.|+. |. +.=.+.|+-|+|-
T Consensus 18 k~~~CPrCG~gvfmA~H~dR~~CGkCgyT 46 (51)
T COG1998 18 KNRFCPRCGPGVFMADHKDRWACGKCGYT 46 (51)
T ss_pred ccccCCCCCCcchhhhcCceeEeccccce
Confidence 4568899984 22 2448889999984
No 433
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=27.23 E-value=33 Score=27.87 Aligned_cols=28 Identities=7% Similarity=0.223 Sum_probs=21.2
Q ss_pred CHHHHHHHHhhcccCCCCeeE-EecCCCCCCce
Q 021494 10 DLETKKALNRKFDIEGIPCLV-VLQPYDDKDDA 41 (311)
Q Consensus 10 d~~~~~~l~~~~~i~~~P~l~-~~~~~~~~g~~ 41 (311)
|.+....++.+|+|++.|+++ ++. +|+.
T Consensus 62 DVDe~~dla~~y~I~~~~t~~~ffk----~g~~ 90 (142)
T PLN00410 62 DITEVPDFNTMYELYDPCTVMFFFR----NKHI 90 (142)
T ss_pred ECCCCHHHHHHcCccCCCcEEEEEE----CCeE
Confidence 445678999999999888888 454 6663
No 434
>PRK02935 hypothetical protein; Provisional
Probab=26.67 E-value=46 Score=25.53 Aligned_cols=32 Identities=19% Similarity=0.499 Sum_probs=25.3
Q ss_pred CcccccccCCCc--ceeEeCCCCCCCcccccccc
Q 021494 271 PFICCDCDEQGS--GWAYQCLECGYEVHPKCVRA 302 (311)
Q Consensus 271 ~~~Cd~C~~~g~--~w~~~C~~c~~~~h~~c~~~ 302 (311)
..+||.|++.-- +=+.+|--|+=.|+.+=.++
T Consensus 70 qV~CP~C~K~TKmLGrvD~CM~C~~PLTLd~~le 103 (110)
T PRK02935 70 QVICPSCEKPTKMLGRVDACMHCNQPLTLDRSLE 103 (110)
T ss_pred eeECCCCCchhhhccceeecCcCCCcCCcCcccc
Confidence 459999999664 88999999998888754433
No 435
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=26.39 E-value=3.2e+02 Score=23.78 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=18.8
Q ss_pred HHHHHHhCCCCccceEEEECC
Q 021494 185 IKELTKYFDVQGIPCLVIIGP 205 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~ 205 (311)
+..+.+.|+|+.+|++|+...
T Consensus 151 DP~lF~~F~I~~VPafVv~C~ 171 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCS 171 (212)
T ss_pred CHHHHHhcCCccccEEEEEcC
Confidence 568999999999999999854
No 436
>PF14787 zf-CCHC_5: GAG-polyprotein viral zinc-finger; PDB: 1CL4_A 1DSV_A.
Probab=26.01 E-value=19 Score=21.93 Aligned_cols=15 Identities=40% Similarity=1.198 Sum_probs=6.4
Q ss_pred ccccccCCCcceeEeC
Q 021494 273 ICCDCDEQGSGWAYQC 288 (311)
Q Consensus 273 ~Cd~C~~~g~~w~~~C 288 (311)
.|+.|++ |..|+-.|
T Consensus 4 ~CprC~k-g~Hwa~~C 18 (36)
T PF14787_consen 4 LCPRCGK-GFHWASEC 18 (36)
T ss_dssp C-TTTSS-SCS-TTT-
T ss_pred cCcccCC-Ccchhhhh
Confidence 3666665 44565444
No 437
>PF13842 Tnp_zf-ribbon_2: DDE_Tnp_1-like zinc-ribbon
Probab=25.45 E-value=52 Score=19.39 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=11.6
Q ss_pred ceeEeCCCCCCCccc
Q 021494 283 GWAYQCLECGYEVHP 297 (311)
Q Consensus 283 ~w~~~C~~c~~~~h~ 297 (311)
.=.|+|..|+-.||.
T Consensus 14 ~T~~~C~~C~v~lC~ 28 (32)
T PF13842_consen 14 DTRYMCSKCDVPLCV 28 (32)
T ss_pred eeEEEccCCCCcccC
Confidence 468999999866665
No 438
>PRK12559 transcriptional regulator Spx; Provisional
Probab=25.37 E-value=75 Score=25.29 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=27.4
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecC---CCHHHHHHHHhc
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTD---RDQTSFESYFGT 172 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d---~~~~~~~~~~~~ 172 (311)
+..|..++|+.|++....|.+ + ++.+-.+.+. .+.+++..+++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~---------gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-------N---------QIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------c---------CCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 345778999999987765542 1 3445555443 255667776664
No 439
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.98 E-value=31 Score=27.77 Aligned_cols=29 Identities=21% Similarity=0.453 Sum_probs=19.8
Q ss_pred CCcccccccCCCcc-----------------------eeEeCCCCC-CCcccc
Q 021494 270 GPFICCDCDEQGSG-----------------------WAYQCLECG-YEVHPK 298 (311)
Q Consensus 270 ~~~~Cd~C~~~g~~-----------------------w~~~C~~c~-~~~h~~ 298 (311)
..++|..|+...+. ..+.|+.|+ ++++..
T Consensus 69 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~~~~i~ 121 (135)
T PRK03824 69 AVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSRDFEIV 121 (135)
T ss_pred eEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCCCCcEEe
Confidence 56899999865432 345599995 777653
No 440
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=24.73 E-value=36 Score=26.92 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=21.2
Q ss_pred CCcccccccCCCcc---------eeEeCCCCC-CCcccccccc
Q 021494 270 GPFICCDCDEQGSG---------WAYQCLECG-YEVHPKCVRA 302 (311)
Q Consensus 270 ~~~~Cd~C~~~g~~---------w~~~C~~c~-~~~h~~c~~~ 302 (311)
...+| .|+..... +.+.|+.|+ +++......+
T Consensus 69 ~~~~C-~Cg~~~~~~~~~~~~~~~~~~CP~Cgs~~~~i~~G~E 110 (124)
T PRK00762 69 VEIEC-ECGYEGVVDEDEIDHYAAVIECPVCGNKRAHILGGRE 110 (124)
T ss_pred eeEEe-eCcCcccccccchhccccCCcCcCCCCCCCEEecCCe
Confidence 45799 99977321 236799996 8877654433
No 441
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=24.71 E-value=5.3e+02 Score=23.40 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=36.3
Q ss_pred CCCCeEe-eCCCCceeeccccCC-CEEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCH
Q 021494 88 HDRGYLL-GHPPDEKVPVSSLVG-KTVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQ 163 (311)
Q Consensus 88 ~~pdf~l-~~~g~~~v~l~~~~g-k~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~ 163 (311)
..|-|++ |.+|. .+-.+.-.| +.+.++|+-. ......|.++.+.-.+. ..++.|+.|+++.-.
T Consensus 81 ~VPVFtItn~~G~-pvl~s~~~~~~~~gvf~s~q-----edA~afL~~lk~~~p~l-------~~~~kV~pvsL~~vY 145 (270)
T TIGR00995 81 GTSVFTVSNAQNE-FVLASDNDGEKSIGLLCFRQ-----EDAEAFLAQLRKRKPEV-------GSQAKVVPITLDQVY 145 (270)
T ss_pred CCceEEEEcCCCC-eEEEECCCCCceEEEEECCH-----HHHHHHHHHHHhhCccc-------cCCceEEEEEHHHHH
Confidence 4688999 88898 887776555 6666655421 00112222222221211 457899999987643
No 442
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=24.21 E-value=39 Score=20.73 Aligned_cols=30 Identities=17% Similarity=0.365 Sum_probs=22.1
Q ss_pred cccccccCCCcceeEeCCCCCCCccccccccc
Q 021494 272 FICCDCDEQGSGWAYQCLECGYEVHPKCVRAV 303 (311)
Q Consensus 272 ~~Cd~C~~~g~~w~~~C~~c~~~~h~~c~~~~ 303 (311)
..|+.|.+ ..-.++|..|+--+...|+...
T Consensus 4 ~~C~~H~~--~~~~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 4 PKCPEHPE--EPLSLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SB-SSTTT--SBEEEEETTTTEEEEHHHHHTS
T ss_pred ccCccCCc--cceEEEecCCCCccCccCCCCC
Confidence 45555554 3478999999999999998763
No 443
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=24.16 E-value=42 Score=23.13 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=22.4
Q ss_pred cCCCCCCcccccccCCCc--ceeEeCCCCCCCcccccccc
Q 021494 265 EGTGGGPFICCDCDEQGS--GWAYQCLECGYEVHPKCVRA 302 (311)
Q Consensus 265 ~~~~~~~~~Cd~C~~~g~--~w~~~C~~c~~~~h~~c~~~ 302 (311)
|........|..|++... -..+.|.-|+--+..+|...
T Consensus 3 W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 3 WVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred cCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 455667788999999775 44899999999999999865
No 444
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=24.06 E-value=3.7e+02 Score=21.69 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCccceEEEECC-CCcEEEe
Q 021494 185 IKELTKYFDVQGIPCLVIIGP-EGKTVTK 212 (311)
Q Consensus 185 ~~~l~~~~~v~~~Pt~vlid~-~G~iv~~ 212 (311)
+..+++.+++.. |+++++.+ +++.+..
T Consensus 30 ~~~~~~~~~~~~-p~i~~~k~~~~~~~~y 57 (184)
T PF13848_consen 30 NEELAKKYGIKE-PTIVVYKKFDEKPVVY 57 (184)
T ss_dssp -HHHHHHCTCSS-SEEEEEECTTTSEEEE
T ss_pred HHHHHHHhCCCC-CcEEEeccCCCCceec
Confidence 446888899988 99999965 3444444
No 445
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=23.35 E-value=90 Score=24.22 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=18.4
Q ss_pred HHHHhhcccCCCCeeEEecC
Q 021494 15 KALNRKFDIEGIPCLVVLQP 34 (311)
Q Consensus 15 ~~l~~~~~i~~~P~l~~~~~ 34 (311)
.++++.+++.++|+++++.+
T Consensus 66 ~~la~~l~~~~~P~~~~l~~ 85 (116)
T cd02991 66 YRVSQALRERTYPFLAMIML 85 (116)
T ss_pred HHHHHHhCCCCCCEEEEEEe
Confidence 67999999999999999975
No 446
>PRK05580 primosome assembly protein PriA; Validated
Probab=23.35 E-value=2.5e+02 Score=29.08 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=10.5
Q ss_pred HHhCCCCccceEEEECC
Q 021494 189 TKYFDVQGIPCLVIIGP 205 (311)
Q Consensus 189 ~~~~~v~~~Pt~vlid~ 205 (311)
.+.++-...|.+.++|.
T Consensus 323 ~~r~~~~~~p~v~~id~ 339 (679)
T PRK05580 323 TKRAGGARLPEVEIIDM 339 (679)
T ss_pred ccccccCCCCeEEEEec
Confidence 34444445788888874
No 447
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=23.20 E-value=79 Score=22.23 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=20.3
Q ss_pred HHHHhCCCCccceEEEECCCCcEEEeccc
Q 021494 187 ELTKYFDVQGIPCLVIIGPEGKTVTKQGR 215 (311)
Q Consensus 187 ~l~~~~~v~~~Pt~vlid~~G~iv~~~g~ 215 (311)
++.+.+.+...-..+|+|++|+++.....
T Consensus 43 ~~i~~~~~~~~g~~~ivd~~G~ii~hp~~ 71 (81)
T PF02743_consen 43 EIISNIKFGNNGYAFIVDKNGTIIAHPDK 71 (81)
T ss_dssp HHHTTSBBTTTBEEEEEETTSBBCE-SSG
T ss_pred eEEEeeEECCCEEEEEEECCCCEEEeCCh
Confidence 44555556666689999999999987443
No 448
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=22.99 E-value=40 Score=26.19 Aligned_cols=33 Identities=18% Similarity=0.347 Sum_probs=25.8
Q ss_pred CCcccccccCCC--cceeEeCCCCCCCcccccccc
Q 021494 270 GPFICCDCDEQG--SGWAYQCLECGYEVHPKCVRA 302 (311)
Q Consensus 270 ~~~~Cd~C~~~g--~~w~~~C~~c~~~~h~~c~~~ 302 (311)
....||.|++.- .+=+.+|--|+=.|+.+=.++
T Consensus 68 v~V~CP~C~K~TKmLGr~D~CM~C~~pLTLd~~le 102 (114)
T PF11023_consen 68 VQVECPNCGKQTKMLGRVDACMHCKEPLTLDPSLE 102 (114)
T ss_pred eeeECCCCCChHhhhchhhccCcCCCcCccCchhh
Confidence 346799999976 577899999998888754443
No 449
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.92 E-value=85 Score=26.01 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.6
Q ss_pred EEEEecCCChhhHhhhHHHHHHHHHHH
Q 021494 113 GLYFSARWCIPCEKFMPKLLSIYQKIK 139 (311)
Q Consensus 113 ll~F~a~wC~~C~~~~p~l~~l~~~~~ 139 (311)
+.+|+-+.||+|-...+.|.++.+++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 456778999999999999999999984
No 450
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=22.68 E-value=43 Score=17.81 Aligned_cols=8 Identities=25% Similarity=0.750 Sum_probs=6.2
Q ss_pred EeCCCCCC
Q 021494 286 YQCLECGY 293 (311)
Q Consensus 286 ~~C~~c~~ 293 (311)
|+|..|+.
T Consensus 1 ~~C~~C~~ 8 (25)
T PF12874_consen 1 FYCDICNK 8 (25)
T ss_dssp EEETTTTE
T ss_pred CCCCCCCC
Confidence 68999873
No 451
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=22.34 E-value=25 Score=21.38 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=11.8
Q ss_pred eEeCCCCCCCcccccccc
Q 021494 285 AYQCLECGYEVHPKCVRA 302 (311)
Q Consensus 285 ~~~C~~c~~~~h~~c~~~ 302 (311)
...|.-|+.-+|.+|--.
T Consensus 4 ll~C~~C~v~VH~~CYGv 21 (36)
T PF13831_consen 4 LLFCDNCNVAVHQSCYGV 21 (36)
T ss_dssp EEE-SSS--EEEHHHHT-
T ss_pred eEEeCCCCCcCChhhCCc
Confidence 357999999999999765
No 453
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=22.15 E-value=52 Score=19.37 Aligned_cols=10 Identities=50% Similarity=1.212 Sum_probs=7.4
Q ss_pred eEeCCCCCCC
Q 021494 285 AYQCLECGYE 294 (311)
Q Consensus 285 ~~~C~~c~~~ 294 (311)
.|.|..|+|-
T Consensus 1 ~~~C~~CGy~ 10 (33)
T cd00350 1 KYVCPVCGYI 10 (33)
T ss_pred CEECCCCCCE
Confidence 3778888864
No 454
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=21.89 E-value=50 Score=34.49 Aligned_cols=35 Identities=26% Similarity=0.610 Sum_probs=29.3
Q ss_pred CCCCcccccccCCCcceeEeCCCCCCCcccccccc
Q 021494 268 GGGPFICCDCDEQGSGWAYQCLECGYEVHPKCVRA 302 (311)
Q Consensus 268 ~~~~~~Cd~C~~~g~~w~~~C~~c~~~~h~~c~~~ 302 (311)
-+-..+|+.|...-+-.-..|..|+|.++..|...
T Consensus 226 ~g~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~ 260 (889)
T KOG1356|consen 226 KGIREMCDRCETTLFNIHWRCPRCGFGVCLDCYRK 260 (889)
T ss_pred cCcchhhhhhcccccceeEEccccCCeeeecchhh
Confidence 34578999999987756667999999999999876
No 455
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=21.74 E-value=79 Score=17.45 Aligned_cols=9 Identities=33% Similarity=1.423 Sum_probs=5.2
Q ss_pred eEeCCCCCC
Q 021494 285 AYQCLECGY 293 (311)
Q Consensus 285 ~~~C~~c~~ 293 (311)
.|-|+-|++
T Consensus 16 ~f~CPnCG~ 24 (24)
T PF07754_consen 16 PFPCPNCGF 24 (24)
T ss_pred eEeCCCCCC
Confidence 456666654
No 456
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=21.69 E-value=47 Score=30.15 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=17.6
Q ss_pred cceeeecCCCCCCcccccccC
Q 021494 259 ELNLVSEGTGGGPFICCDCDE 279 (311)
Q Consensus 259 ~~~~~~~~~~~~~~~Cd~C~~ 279 (311)
...+++.+.|-...||++|+.
T Consensus 40 ~gilvIRFEMPynIWC~gC~n 60 (317)
T KOG2990|consen 40 QGILVIRFEMPYNIWCDGCKN 60 (317)
T ss_pred cceEEEEEecccchhhccHHH
Confidence 457778888889999999985
No 457
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=21.67 E-value=1.4e+02 Score=23.25 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=17.9
Q ss_pred HHHHhhcc----cCCCCeeEEecCCCCCCceee
Q 021494 15 KALNRKFD----IEGIPCLVVLQPYDDKDDATL 43 (311)
Q Consensus 15 ~~l~~~~~----i~~~P~l~~~~~~~~~g~~~~ 43 (311)
.++..+|+ |.++||++++. +|+.+.
T Consensus 76 ~~~~~~~~i~~~i~~~PT~v~~k----~Gk~v~ 104 (122)
T TIGR01295 76 TAFRSRFGIPTSFMGTPTFVHIT----DGKQVS 104 (122)
T ss_pred HHHHHHcCCcccCCCCCEEEEEe----CCeEEE
Confidence 45666665 55699999998 687653
No 458
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=21.67 E-value=37 Score=26.48 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=22.7
Q ss_pred CCcccccccCCCc--ceeEeCCCCC-CCcccccccc
Q 021494 270 GPFICCDCDEQGS--GWAYQCLECG-YEVHPKCVRA 302 (311)
Q Consensus 270 ~~~~Cd~C~~~g~--~w~~~C~~c~-~~~h~~c~~~ 302 (311)
....|..|+.... .+.+.|+.|+ ++++.....+
T Consensus 69 ~~~~C~~Cg~~~~~~~~~~~CP~Cgs~~~~i~~G~E 104 (115)
T TIGR00100 69 VECECEDCSEEVSPEIDLYRCPKCHGIMLQVRAGKE 104 (115)
T ss_pred cEEEcccCCCEEecCCcCccCcCCcCCCcEEecCCe
Confidence 4579999998664 3466699995 7766554443
No 459
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=21.44 E-value=3.8e+02 Score=23.14 Aligned_cols=76 Identities=13% Similarity=0.237 Sum_probs=48.7
Q ss_pred EEEEEEecCCChhhHhhhHHHHHHHHHHHhhhhhcCCCCCCeEEEEEecCCCHHHHHHHHhcCCCcc-------cccCch
Q 021494 111 TVGLYFSARWCIPCEKFMPKLLSIYQKIKQNLVEKGDALEDFEVVFVSTDRDQTSFESYFGTMPWLA-------LPFGDP 183 (311)
Q Consensus 111 ~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~~~~~vv~Vs~d~~~~~~~~~~~~~~~~~-------~p~~~d 183 (311)
-.+.+|.-..|+.|...+..+.. . +..+.|..|..+.+.+.+..+...+.... ++...
T Consensus 110 ~rlalFvkd~C~~C~~~~~~l~a-----~---------~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNH- 174 (200)
T TIGR03759 110 GRLALFVKDDCVACDARVQRLLA-----D---------NAPLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNH- 174 (200)
T ss_pred CeEEEEeCCCChHHHHHHHHHhc-----C---------CCceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEec-
Confidence 35566777999999988876633 1 34788999887777788888877655221 12222
Q ss_pred hHHHHHHhCCCC-ccceEEE
Q 021494 184 TIKELTKYFDVQ-GIPCLVI 202 (311)
Q Consensus 184 ~~~~l~~~~~v~-~~Pt~vl 202 (311)
+..-...||+. .+|.++.
T Consensus 175 -D~G~w~~lg~~g~lP~~l~ 193 (200)
T TIGR03759 175 -DNGRWLQLGLQGQLPAVVQ 193 (200)
T ss_pred -CcchHHHccCCCCCCEEEE
Confidence 23446667863 4676644
No 460
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=21.24 E-value=79 Score=25.91 Aligned_cols=30 Identities=20% Similarity=0.513 Sum_probs=24.2
Q ss_pred CCCCCcccccccCCCcceeEeCCCCC-----CCcc
Q 021494 267 TGGGPFICCDCDEQGSGWAYQCLECG-----YEVH 296 (311)
Q Consensus 267 ~~~~~~~Cd~C~~~g~~w~~~C~~c~-----~~~h 296 (311)
.......|..|+...+.=++.|..|+ ||-|
T Consensus 44 ~~~~~~~C~~C~~~kp~Rs~HC~~C~~CV~~~DHH 78 (174)
T PF01529_consen 44 ENGELKYCSTCKIIKPPRSHHCRVCNRCVLRFDHH 78 (174)
T ss_pred cCCCCEECcccCCcCCCcceecccccccccccccc
Confidence 45567899999999988888888886 7766
No 461
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=21.17 E-value=62 Score=26.98 Aligned_cols=31 Identities=23% Similarity=0.452 Sum_probs=19.9
Q ss_pred CHHHHHHHHhhc--------ccCCCCeeEEecCCCCCCceee
Q 021494 10 DLETKKALNRKF--------DIEGIPCLVVLQPYDDKDDATL 43 (311)
Q Consensus 10 d~~~~~~l~~~~--------~i~~~P~l~~~~~~~~~g~~~~ 43 (311)
|++.+..|...| +..|.|+.+++.+ +|+.+.
T Consensus 79 Dree~Pdid~~y~~~~~~~~~~gGwPl~vfltP---dg~p~~ 117 (163)
T PF03190_consen 79 DREERPDIDKIYMNAVQAMSGSGGWPLTVFLTP---DGKPFF 117 (163)
T ss_dssp ETTT-HHHHHHHHHHHHHHHS---SSEEEEE-T---TS-EEE
T ss_pred ccccCccHHHHHHHHHHHhcCCCCCCceEEECC---CCCeee
Confidence 555667788777 7789999999998 888864
No 462
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=21.13 E-value=38 Score=20.13 Aligned_cols=19 Identities=26% Similarity=1.020 Sum_probs=14.1
Q ss_pred CcccccccCCCcceeEeCCC
Q 021494 271 PFICCDCDEQGSGWAYQCLE 290 (311)
Q Consensus 271 ~~~Cd~C~~~g~~w~~~C~~ 290 (311)
.++|-.|++.| .|.--|+.
T Consensus 8 ~Y~C~~C~~~G-H~i~dCP~ 26 (32)
T PF13696_consen 8 GYVCHRCGQKG-HWIQDCPT 26 (32)
T ss_pred CCEeecCCCCC-ccHhHCCC
Confidence 47888888888 56666664
No 463
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.43 E-value=36 Score=26.80 Aligned_cols=28 Identities=25% Similarity=0.505 Sum_probs=18.8
Q ss_pred CcccccccCCC--cce---eEeCCCCCCCcccc
Q 021494 271 PFICCDCDEQG--SGW---AYQCLECGYEVHPK 298 (311)
Q Consensus 271 ~~~Cd~C~~~g--~~w---~~~C~~c~~~~h~~ 298 (311)
.-.|++|++=- .++ +-.|..|+.|+|-.
T Consensus 21 ~grCP~CGeGrLF~gFLK~~p~C~aCG~dyg~~ 53 (126)
T COG5349 21 RGRCPRCGEGRLFRGFLKVVPACEACGLDYGFA 53 (126)
T ss_pred cCCCCCCCCchhhhhhcccCchhhhccccccCC
Confidence 45799998833 233 44599998776643
No 464
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=20.43 E-value=5.1e+02 Score=25.55 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=17.5
Q ss_pred cCCCEEEEEEecCCChhhHhhhHHHHHHHH
Q 021494 107 LVGKTVGLYFSARWCIPCEKFMPKLLSIYQ 136 (311)
Q Consensus 107 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~ 136 (311)
+++.+.|+.|.. -|..|......|+++.+
T Consensus 17 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~ 45 (515)
T TIGR03140 17 LENPVTLVLSAG-SHEKSKELLELLDEIAS 45 (515)
T ss_pred cCCCEEEEEEeC-CCchhHHHHHHHHHHHH
Confidence 445566666666 57888766655555443
No 465
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=20.20 E-value=98 Score=26.39 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=19.2
Q ss_pred HHhhcccCCCCeeEEecCCCCCCceee
Q 021494 17 LNRKFDIEGIPCLVVLQPYDDKDDATL 43 (311)
Q Consensus 17 l~~~~~i~~~P~l~~~~~~~~~g~~~~ 43 (311)
....|+|.++||++++. +|+.+.
T Consensus 144 ~~~~~~i~~lPTlliyk----~G~~v~ 166 (192)
T cd02988 144 CIPNYPDKNLPTILVYR----NGDIVK 166 (192)
T ss_pred hHhhCCCCCCCEEEEEE----CCEEEE
Confidence 46899999999999998 677653
No 466
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=20.16 E-value=55 Score=21.18 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=6.4
Q ss_pred cccccccCCCcce
Q 021494 272 FICCDCDEQGSGW 284 (311)
Q Consensus 272 ~~Cd~C~~~g~~w 284 (311)
|.|..|+.....|
T Consensus 6 y~C~~Cg~~fe~~ 18 (52)
T TIGR02605 6 YRCTACGHRFEVL 18 (52)
T ss_pred EEeCCCCCEeEEE
Confidence 4455555544444
No 467
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=20.09 E-value=70 Score=24.89 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=21.7
Q ss_pred HHHHHhhcccCCC---------CeeEEecCCCCCCcee
Q 021494 14 KKALNRKFDIEGI---------PCLVVLQPYDDKDDAT 42 (311)
Q Consensus 14 ~~~l~~~~~i~~~---------P~l~~~~~~~~~g~~~ 42 (311)
..++.+.|++... |+.+++++ +|++.
T Consensus 89 ~~~~~~~~gv~~~~~~~~~~~~p~~~lid~---~G~v~ 123 (140)
T cd03017 89 DGKLAKAYGVWGEKKKKYMGIERSTFLIDP---DGKIV 123 (140)
T ss_pred ccHHHHHhCCccccccccCCcceeEEEECC---CCEEE
Confidence 3578999999988 89999997 78775
No 468
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=20.02 E-value=55 Score=24.42 Aligned_cols=26 Identities=19% Similarity=0.566 Sum_probs=15.5
Q ss_pred CCCcccccccCCCcce-e---EeCCCCCCC
Q 021494 269 GGPFICCDCDEQGSGW-A---YQCLECGYE 294 (311)
Q Consensus 269 ~~~~~Cd~C~~~g~~w-~---~~C~~c~~~ 294 (311)
...+.|+.|++..--. + ..|..|++-
T Consensus 34 ~a~y~CpfCgk~~vkR~a~GIW~C~~C~~~ 63 (90)
T PTZ00255 34 HAKYFCPFCGKHAVKRQAVGIWRCKGCKKT 63 (90)
T ss_pred hCCccCCCCCCCceeeeeeEEEEcCCCCCE
Confidence 3456788887655322 1 348888753
Done!