Query 021495
Match_columns 311
No_of_seqs 187 out of 310
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 1.2E-91 2.7E-96 660.1 22.6 285 26-310 5-291 (307)
2 PLN02941 inositol-tetrakisphos 100.0 2.3E-80 5.1E-85 589.9 31.5 290 21-310 14-306 (328)
3 TIGR02144 LysX_arch Lysine bio 99.9 1E-24 2.2E-29 202.4 22.5 227 44-310 11-256 (280)
4 PRK10446 ribosomal protein S6 99.9 5.3E-24 1.2E-28 200.8 23.5 227 46-310 16-267 (300)
5 TIGR00768 rimK_fam alpha-L-glu 99.9 9E-24 2E-28 194.6 22.0 229 44-310 12-258 (277)
6 COG0189 RimK Glutathione synth 99.9 8.7E-24 1.9E-28 201.5 19.1 200 72-310 77-291 (318)
7 PF08443 RimK: RimK-like ATP-g 99.9 2.4E-23 5.3E-28 184.4 13.2 163 113-311 2-172 (190)
8 PRK01372 ddl D-alanine--D-alan 99.9 3.7E-20 8E-25 174.1 22.6 232 46-310 26-272 (304)
9 TIGR01205 D_ala_D_alaTIGR D-al 99.9 8.9E-20 1.9E-24 172.2 21.7 235 47-311 22-288 (315)
10 PRK14571 D-alanyl-alanine synt 99.8 2.2E-18 4.7E-23 162.4 20.2 226 48-310 24-267 (299)
11 TIGR03103 trio_acet_GNAT GNAT- 99.8 2.9E-18 6.4E-23 174.5 22.2 230 46-311 245-525 (547)
12 PRK01966 ddl D-alanyl-alanine 99.8 3.3E-18 7.2E-23 163.9 20.8 207 73-310 81-303 (333)
13 PRK14569 D-alanyl-alanine synt 99.8 3.3E-18 7.1E-23 161.4 20.2 225 48-310 27-267 (296)
14 TIGR01380 glut_syn glutathione 99.8 5E-18 1.1E-22 161.6 20.6 218 45-310 20-289 (312)
15 PRK14572 D-alanyl-alanine synt 99.8 9.1E-18 2E-22 161.8 20.0 209 73-310 88-317 (347)
16 PRK05246 glutathione synthetas 99.8 1.2E-17 2.6E-22 159.0 19.5 231 30-308 3-287 (316)
17 PRK14568 vanB D-alanine--D-lac 99.8 2.2E-17 4.8E-22 158.8 21.4 209 73-310 90-312 (343)
18 PRK12458 glutathione synthetas 99.8 3.7E-17 8E-22 157.4 22.4 192 73-309 79-300 (338)
19 PF07478 Dala_Dala_lig_C: D-al 99.8 1.2E-18 2.6E-23 156.5 10.6 160 132-311 5-178 (203)
20 PRK14016 cyanophycin synthetas 99.8 1.3E-17 2.9E-22 174.6 20.1 230 47-310 164-449 (727)
21 PRK02471 bifunctional glutamat 99.8 2.1E-17 4.5E-22 173.3 21.4 232 46-311 435-729 (752)
22 PRK14570 D-alanyl-alanine synt 99.8 7.7E-18 1.7E-22 163.6 15.3 212 73-310 87-318 (364)
23 TIGR02068 cya_phycin_syn cyano 99.7 1.6E-16 3.5E-21 169.3 17.1 229 47-311 163-449 (864)
24 TIGR02291 rimK_rel_E_lig alpha 99.7 5.9E-16 1.3E-20 147.4 19.0 193 103-310 26-272 (317)
25 PRK14573 bifunctional D-alanyl 99.7 2.8E-15 6E-20 159.1 20.2 240 48-310 475-758 (809)
26 COG1181 DdlA D-alanine-D-alani 99.6 3.9E-14 8.4E-19 135.3 21.6 242 46-310 24-288 (317)
27 TIGR01435 glu_cys_lig_rel glut 99.6 3.5E-14 7.6E-19 147.9 20.8 237 42-311 419-715 (737)
28 TIGR01142 purT phosphoribosylg 99.6 4.5E-14 9.7E-19 136.8 20.0 222 45-309 11-273 (380)
29 TIGR01161 purK phosphoribosyla 99.6 5.6E-14 1.2E-18 135.3 19.8 225 45-309 11-266 (352)
30 PRK06019 phosphoribosylaminoim 99.6 3.1E-14 6.7E-19 138.4 17.7 225 45-309 14-268 (372)
31 PRK12767 carbamoyl phosphate s 99.6 1.7E-13 3.7E-18 129.8 21.1 173 92-308 89-270 (326)
32 PF13535 ATP-grasp_4: ATP-gras 99.6 4.5E-14 9.8E-19 121.8 13.1 165 111-309 1-180 (184)
33 PRK07206 hypothetical protein; 99.6 2.9E-13 6.3E-18 132.7 20.0 223 47-309 16-289 (416)
34 PRK06849 hypothetical protein; 99.6 9.6E-13 2.1E-17 128.4 23.2 165 101-307 103-275 (389)
35 PRK09288 purT phosphoribosylgl 99.5 1.3E-12 2.7E-17 127.3 18.9 223 44-309 23-286 (395)
36 PLN02948 phosphoribosylaminoim 99.5 3.8E-12 8.3E-17 130.5 22.7 240 26-310 20-292 (577)
37 PRK05294 carB carbamoyl phosph 99.5 1.2E-12 2.6E-17 142.7 19.9 227 42-309 574-842 (1066)
38 TIGR01369 CPSaseII_lrg carbamo 99.5 3E-12 6.6E-17 139.3 22.5 243 26-309 555-842 (1050)
39 PRK05586 biotin carboxylase; V 99.5 3E-12 6.6E-17 127.3 19.7 173 98-309 98-294 (447)
40 PRK12833 acetyl-CoA carboxylas 99.5 8.6E-12 1.9E-16 124.9 21.5 173 99-309 102-297 (467)
41 PRK08462 biotin carboxylase; V 99.4 5.6E-12 1.2E-16 125.1 19.1 212 41-309 60-296 (445)
42 PRK02186 argininosuccinate lya 99.4 4.2E-12 9.2E-17 136.2 19.4 223 47-308 18-277 (887)
43 PLN02735 carbamoyl-phosphate s 99.4 4.3E-12 9.4E-17 138.4 19.3 262 14-309 9-322 (1102)
44 PLN02735 carbamoyl-phosphate s 99.4 8.7E-12 1.9E-16 136.1 21.1 227 48-310 600-878 (1102)
45 PRK13790 phosphoribosylamine-- 99.4 8.8E-12 1.9E-16 121.7 19.0 214 46-309 17-251 (379)
46 KOG1057 Arp2/3 complex-interac 99.4 2.5E-12 5.4E-17 131.2 14.8 246 26-307 38-322 (1018)
47 TIGR00514 accC acetyl-CoA carb 99.4 2.1E-11 4.6E-16 121.3 19.6 173 98-309 98-294 (449)
48 PRK08654 pyruvate carboxylase 99.4 3.3E-11 7.1E-16 121.8 21.1 173 98-309 98-293 (499)
49 PRK12815 carB carbamoyl phosph 99.4 2.6E-11 5.7E-16 132.2 21.2 225 47-310 580-841 (1068)
50 PRK05294 carB carbamoyl phosph 99.4 1.1E-11 2.5E-16 135.1 18.4 227 47-309 32-305 (1066)
51 TIGR01369 CPSaseII_lrg carbamo 99.4 2E-11 4.3E-16 133.0 19.5 229 47-309 31-303 (1050)
52 PRK08591 acetyl-CoA carboxylas 99.4 4E-11 8.7E-16 119.1 19.3 175 98-309 98-294 (451)
53 TIGR01235 pyruv_carbox pyruvat 99.3 4.6E-11 1E-15 130.4 20.0 174 98-309 98-294 (1143)
54 PRK07178 pyruvate carboxylase 99.3 7.7E-11 1.7E-15 118.2 19.8 172 99-308 98-292 (472)
55 PRK08463 acetyl-CoA carboxylas 99.3 1.2E-10 2.6E-15 117.1 21.1 174 98-309 97-294 (478)
56 PRK00885 phosphoribosylamine-- 99.3 8.6E-11 1.9E-15 115.9 19.0 103 98-215 85-201 (420)
57 PRK06524 biotin carboxylase-li 99.3 4.5E-11 9.8E-16 119.6 17.1 188 90-309 118-324 (493)
58 PLN02257 phosphoribosylamine-- 99.3 8.5E-11 1.8E-15 116.9 19.0 216 46-310 52-292 (434)
59 PRK06111 acetyl-CoA carboxylas 99.3 2.2E-10 4.8E-15 113.6 20.7 177 98-309 98-294 (450)
60 PF02655 ATP-grasp_3: ATP-gras 99.3 1.8E-11 3.9E-16 105.8 10.5 151 112-308 1-158 (161)
61 PRK13789 phosphoribosylamine-- 99.3 2.5E-10 5.3E-15 113.3 18.7 218 43-310 55-297 (426)
62 PRK12815 carB carbamoyl phosph 99.3 1.7E-10 3.7E-15 125.9 18.5 228 47-309 32-304 (1068)
63 TIGR00877 purD phosphoribosyla 99.3 5.9E-10 1.3E-14 109.8 20.2 213 47-310 55-292 (423)
64 PRK12999 pyruvate carboxylase; 99.2 4.2E-10 9.2E-15 123.2 18.2 173 98-309 102-298 (1146)
65 TIGR02712 urea_carbox urea car 99.2 4.5E-09 9.7E-14 115.8 22.9 172 99-308 98-292 (1201)
66 PF15632 ATPgrasp_Ter: ATP-gra 99.1 1E-08 2.2E-13 98.5 19.5 193 48-309 58-282 (329)
67 PRK06395 phosphoribosylamine-- 99.1 1.4E-08 3.1E-13 101.1 20.9 215 45-309 54-294 (435)
68 COG0458 CarB Carbamoylphosphat 99.0 5.4E-09 1.2E-13 101.7 13.9 228 48-309 21-291 (400)
69 COG0439 AccC Biotin carboxylas 99.0 6.4E-09 1.4E-13 103.5 13.9 177 90-306 91-291 (449)
70 PF02786 CPSase_L_D2: Carbamoy 99.0 1.7E-09 3.7E-14 97.8 8.9 159 114-309 1-181 (211)
71 PF02750 Synapsin_C: Synapsin, 98.9 2.6E-08 5.7E-13 88.2 12.9 164 104-306 1-176 (203)
72 PRK05784 phosphoribosylamine-- 98.9 2E-07 4.3E-12 94.2 20.2 136 45-215 58-218 (486)
73 PF02955 GSH-S_ATP: Prokaryoti 98.8 9.3E-09 2E-13 90.4 7.7 135 135-307 11-161 (173)
74 COG2232 Predicted ATP-dependen 98.8 4.9E-07 1.1E-11 85.9 17.7 218 43-306 19-272 (389)
75 COG1821 Predicted ATP-utilizin 98.8 1.4E-07 3.1E-12 86.7 12.8 162 87-308 92-256 (307)
76 PRK13278 purP 5-formaminoimida 98.7 5.1E-06 1.1E-10 80.9 21.8 143 42-209 26-206 (358)
77 COG0027 PurT Formate-dependent 98.7 1.4E-06 3E-11 82.4 17.0 220 47-308 26-285 (394)
78 PF14398 ATPgrasp_YheCD: YheC/ 98.6 1.2E-06 2.5E-11 81.8 15.3 187 94-310 3-235 (262)
79 COG0026 PurK Phosphoribosylami 98.6 4.3E-06 9.4E-11 80.9 18.0 217 48-304 16-263 (375)
80 COG3919 Predicted ATP-grasp en 98.6 8.2E-07 1.8E-11 83.4 12.1 168 105-310 105-290 (415)
81 PF02222 ATP-grasp: ATP-grasp 98.5 3.6E-07 7.7E-12 80.3 8.0 146 133-306 5-159 (172)
82 PRK13277 5-formaminoimidazole- 98.4 3.4E-06 7.4E-11 81.8 13.7 159 117-306 129-317 (366)
83 PF14397 ATPgrasp_ST: Sugar-tr 98.3 5.1E-05 1.1E-09 71.7 18.5 191 104-310 16-262 (285)
84 PF03133 TTL: Tubulin-tyrosine 98.3 1.7E-06 3.8E-11 81.2 6.7 53 160-215 66-128 (292)
85 KOG0238 3-Methylcrotonyl-CoA c 98.2 1.1E-05 2.3E-10 80.6 11.0 170 98-306 94-287 (670)
86 COG4770 Acetyl/propionyl-CoA c 98.1 3.7E-05 8E-10 77.7 11.7 170 98-306 98-291 (645)
87 COG1038 PycA Pyruvate carboxyl 97.8 0.00011 2.4E-09 76.9 10.4 171 98-306 104-297 (1149)
88 KOG3895 Synaptic vesicle prote 97.7 0.00012 2.5E-09 70.4 7.3 183 87-306 175-365 (488)
89 KOG0369 Pyruvate carboxylase [ 97.4 0.00086 1.9E-08 69.2 9.7 171 98-306 130-323 (1176)
90 COG0151 PurD Phosphoribosylami 97.4 0.011 2.3E-07 58.6 16.9 212 46-309 53-290 (428)
91 PF14305 ATPgrasp_TupA: TupA-l 97.3 0.025 5.5E-07 52.2 17.5 178 105-309 11-219 (239)
92 PF01071 GARS_A: Phosphoribosy 97.1 0.0015 3.3E-08 58.5 7.1 76 132-215 13-102 (194)
93 TIGR01016 sucCoAbeta succinyl- 96.8 0.0018 4E-08 63.5 5.5 81 132-216 15-117 (386)
94 KOG0370 Multifunctional pyrimi 96.8 0.0021 4.5E-08 68.5 5.7 171 100-306 1018-1203(1435)
95 PRK00696 sucC succinyl-CoA syn 96.4 0.0046 1E-07 60.7 5.4 91 116-217 6-118 (388)
96 KOG2156 Tubulin-tyrosine ligas 96.4 0.005 1.1E-07 62.1 5.5 74 135-213 282-361 (662)
97 PF14403 CP_ATPgrasp_2: Circul 94.9 0.061 1.3E-06 54.0 6.7 147 47-202 204-385 (445)
98 PF14243 DUF4343: Domain of un 94.6 1.5 3.2E-05 36.7 13.4 107 161-307 3-115 (130)
99 KOG0368 Acetyl-CoA carboxylase 93.6 0.75 1.6E-05 52.0 11.8 190 90-306 154-375 (2196)
100 PF07065 D123: D123; InterPro 93.4 0.42 9E-06 45.7 8.6 90 191-309 149-240 (299)
101 PF13549 ATP-grasp_5: ATP-gras 90.7 0.08 1.7E-06 48.4 0.2 93 112-215 9-121 (222)
102 PHA02117 glutathionylspermidin 89.9 18 0.00039 36.0 16.0 162 48-224 196-380 (397)
103 KOG2157 Predicted tubulin-tyro 89.7 0.19 4.2E-06 51.1 2.1 56 157-215 197-270 (497)
104 PRK14046 malate--CoA ligase su 81.6 2.4 5.3E-05 41.9 5.1 81 132-216 15-117 (392)
105 PF08442 ATP-grasp_2: ATP-gras 81.5 3.3 7.1E-05 37.3 5.5 70 132-204 14-105 (202)
106 COG1759 5-formaminoimidazole-4 67.5 6.1 0.00013 38.2 3.6 64 116-201 126-203 (361)
107 COG0045 SucC Succinyl-CoA synt 66.9 10 0.00023 37.4 5.2 81 132-215 15-114 (387)
108 KOG2158 Tubulin-tyrosine ligas 64.1 2.9 6.2E-05 42.2 0.8 53 159-215 226-285 (565)
109 PF02729 OTCace_N: Aspartate/o 53.1 57 0.0012 27.5 6.8 76 26-107 37-124 (142)
110 PF02065 Melibiase: Melibiase; 51.0 9.8 0.00021 37.8 2.0 68 33-102 160-230 (394)
111 PF04174 CP_ATPgrasp_1: A circ 48.8 19 0.00042 34.9 3.6 24 281-306 67-90 (330)
112 PLN02235 ATP citrate (pro-S)-l 46.8 28 0.00062 34.9 4.5 79 132-212 23-122 (423)
113 PF04556 DpnII: DpnII restrict 45.4 36 0.00077 32.5 4.7 34 274-309 179-218 (286)
114 KOG0237 Glycinamide ribonucleo 44.5 1.7E+02 0.0038 30.9 9.7 139 47-218 59-211 (788)
115 KOG0370 Multifunctional pyrimi 41.6 7.5 0.00016 42.7 -0.5 228 48-306 403-669 (1435)
116 KOG2983 Uncharacterized conser 41.4 1.2E+02 0.0027 28.8 7.4 83 194-309 165-253 (334)
117 PLN00124 succinyl-CoA ligase [ 38.2 48 0.0011 33.3 4.7 53 132-188 42-105 (422)
118 PF12058 DUF3539: Protein of u 36.9 23 0.0005 27.7 1.7 20 197-216 3-24 (88)
119 TIGR02307 RNA_lig_RNL2 RNA lig 33.9 2.4E+02 0.0051 27.5 8.4 32 191-224 24-56 (325)
120 PF13380 CoA_binding_2: CoA bi 33.9 1.5E+02 0.0032 23.9 6.2 74 29-106 4-88 (116)
121 cd02065 B12-binding_like B12 b 32.0 1.4E+02 0.0031 23.3 5.8 20 47-66 18-37 (125)
122 PRK10507 bifunctional glutathi 30.9 1.5E+02 0.0032 31.4 7.0 156 48-223 399-600 (619)
123 PTZ00445 p36-lilke protein; Pr 30.6 90 0.0019 28.6 4.7 24 47-70 33-56 (219)
124 KOG2157 Predicted tubulin-tyro 28.8 79 0.0017 32.5 4.5 28 281-310 376-403 (497)
125 PF02951 GSH-S_N: Prokaryotic 28.5 1.2E+02 0.0027 24.9 4.8 37 73-110 78-119 (119)
126 PRK12562 ornithine carbamoyltr 28.2 1.6E+02 0.0034 28.7 6.2 74 27-106 44-129 (334)
127 COG0754 Gsp Glutathionylspermi 28.1 38 0.00083 33.3 2.0 172 28-218 170-363 (387)
128 TIGR00853 pts-lac PTS system, 28.1 1.1E+02 0.0024 23.9 4.3 66 42-107 17-85 (95)
129 PF08532 Glyco_hydro_42M: Beta 27.3 1.5E+02 0.0032 26.3 5.5 66 48-117 35-103 (207)
130 PRK03515 ornithine carbamoyltr 26.3 1.6E+02 0.0036 28.5 6.0 72 27-105 44-128 (336)
131 PRK02102 ornithine carbamoyltr 26.2 1.5E+02 0.0033 28.7 5.7 74 27-107 45-131 (331)
132 PF02310 B12-binding: B12 bind 26.0 3.1E+02 0.0067 21.3 6.7 22 46-67 18-39 (121)
133 PF15232 DUF4585: Domain of un 25.9 54 0.0012 24.9 2.0 15 289-304 10-24 (75)
134 COG0127 Xanthosine triphosphat 25.4 99 0.0021 27.8 4.0 40 267-311 46-85 (194)
135 TIGR02049 gshA_ferroox glutama 23.8 7.4E+02 0.016 24.8 10.5 55 162-219 260-336 (403)
136 PRK14805 ornithine carbamoyltr 23.4 1.9E+02 0.0041 27.6 5.8 75 27-108 37-124 (302)
137 COG2874 FlaH Predicted ATPases 23.3 71 0.0015 29.5 2.7 90 26-124 54-150 (235)
138 PRK01713 ornithine carbamoyltr 23.1 2.1E+02 0.0045 27.7 6.1 73 27-106 45-130 (334)
139 TIGR00658 orni_carb_tr ornithi 22.5 2.1E+02 0.0047 27.2 6.0 56 47-106 56-123 (304)
140 PRK04284 ornithine carbamoyltr 22.5 2.2E+02 0.0047 27.6 6.0 72 27-105 44-128 (332)
141 PRK14680 hypothetical protein; 22.4 1.9E+02 0.0042 24.2 5.0 38 267-306 10-56 (134)
142 cd05565 PTS_IIB_lactose PTS_II 22.1 4E+02 0.0087 21.1 6.8 75 42-117 14-92 (99)
143 PRK00779 ornithine carbamoyltr 22.0 2.1E+02 0.0045 27.3 5.8 74 27-107 42-128 (304)
144 PF01725 Ham1p_like: Ham1 fami 21.8 42 0.00091 29.7 0.9 38 266-311 46-83 (189)
145 cd03770 SR_TndX_transposase Se 21.6 4.6E+02 0.0099 21.5 7.7 33 30-62 1-41 (140)
146 TIGR00670 asp_carb_tr aspartat 21.6 2.3E+02 0.0049 27.1 5.9 57 47-107 56-125 (301)
147 PRK14679 hypothetical protein; 20.3 2.4E+02 0.0051 23.6 5.1 37 268-306 20-65 (128)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=1.2e-91 Score=660.07 Aligned_cols=285 Identities=53% Similarity=0.938 Sum_probs=237.0
Q ss_pred CccEEEEEEeCchhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCc
Q 021495 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDP 105 (311)
Q Consensus 26 ~~~~~Vgy~~~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp 105 (311)
+++++|||||++||+++|+|++|+.+|+++||+||+||+++||++||||||||||+||..|+++|++|+++||+++||||
T Consensus 5 ~~~~~VGy~l~~kK~~~~~~~~~~~~~~~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v~viDp 84 (307)
T PF05770_consen 5 RKRFRVGYALSPKKQKSFIQPSFIDLARSRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEVVVIDP 84 (307)
T ss_dssp GTT-EEEEE--HHHHHHHCCCHHCCCCCCCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTSEEET-
T ss_pred ccceEEEEEECHHHHHHhhHHHHHHHHHhcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCeEEEcC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcc
Q 021495 106 PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF 185 (311)
Q Consensus 106 ~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~ 185 (311)
+++|++|+||.+|++.|++++...+.+.|++|+|+++.++.+++.+.+.+++|+||+||||++||||++||+|+||||++
T Consensus 85 ~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~~~ 164 (307)
T PF05770_consen 85 PDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFNEE 164 (307)
T ss_dssp HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-SGG
T ss_pred HHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEECHH
Confidence 99999999999999999998776666799999999998667778888899999999999999999999999999999999
Q ss_pred ccccCCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCC--CCCCCC
Q 021495 186 SLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLD--PGIAEL 263 (311)
Q Consensus 186 ~L~~l~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~--p~~~~~ 263 (311)
||+++++|||+||||||||++||||||||++++++|+||||++.++.....++|+|+++|+.++.+..+.++ +...++
T Consensus 165 gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~R~SLpn~~~~~~~~~~~~f~~~~vs~~~~~~~~~~~d~~~~~~~~ 244 (307)
T PF05770_consen 165 GLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVKRPSLPNVSSGKLDREEIFFDFHQVSKLESSSDLSDLDKDPSQVEM 244 (307)
T ss_dssp GGTT--SSEEEEE----TTEEEEEEEETTEEEEEEEE------SSS-TCGGCCCEGGGTCSTTTSSGGGSBSS-TTTTTS
T ss_pred HHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEECCCCCCCCcccccccccceeccccCCccccCchhhcccCcccccC
Confidence 999999999999999999999999999999999999999999988776667899999999998887776665 455678
Q ss_pred CChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 264 PPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 264 p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
|+.++++++|++||++|||+|||||||++++|+++||||||||||||
T Consensus 245 p~~~~v~~la~~LR~~lgL~LFgfDvI~~~~t~~~~~VIDINyFPgY 291 (307)
T PF05770_consen 245 PPDELVEKLAKELRRALGLTLFGFDVIRENGTGGRYYVIDINYFPGY 291 (307)
T ss_dssp --HHHHHHHHHHHHHHHT-SEEEEEEEEGCCT-SSEEEEEEEES--T
T ss_pred CCHHHHHHHHHHHHHHhCcceeeeEEEEEcCCCCcEEEEEeccCCCc
Confidence 88999999999999999999999999999999568999999999998
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=2.3e-80 Score=589.92 Aligned_cols=290 Identities=70% Similarity=1.113 Sum_probs=266.1
Q ss_pred cCCCCCccEEEEEEeCchhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCe
Q 021495 21 SGVLQPERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEV 100 (311)
Q Consensus 21 ~~~~~~~~~~Vgy~~~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v 100 (311)
+.+..+++++|||||++||+++|+|++|+++|+++||+|++||+++||++||||||||||++++.|++.+++|..+||++
T Consensus 14 ~~~~~~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv 93 (328)
T PLN02941 14 SSSSQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDV 93 (328)
T ss_pred cccccCCceEEEEEECHHHHHHHhhHHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCCc
Confidence 34466789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEE
Q 021495 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (311)
Q Consensus 101 ~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~l 180 (311)
+||||+++|++|+||..|++.|++++++.+..+|++|+|+++++...++...+..++++||+||||++||||++||+|++
T Consensus 94 ~vidp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~l 173 (328)
T PLN02941 94 TVLDPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSL 173 (328)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEE
Confidence 99999999999999999999999998887777899999999976544344446678999999999999999999999999
Q ss_pred EcCccccccCCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCC---CC
Q 021495 181 AYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD---LD 257 (311)
Q Consensus 181 v~~~~~L~~l~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~---~~ 257 (311)
|+++++|..+++|||+||||||+|++||||||||++.+++|+|+|||+.++..+..|.++|+++|+.++.++.+. ++
T Consensus 174 v~~~~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v~~~~R~S~~n~~~~~~n~~~G~~~f~~vs~~~~~~~~~~~~~~~ 253 (328)
T PLN02941 174 AYDQEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCVRRFSLPDVSEEELSSAEGVLPFPRVSNAAASADDADNGGLD 253 (328)
T ss_pred ecCHHHHHhcCCcEEEEEecCCCCEEEEEEEECCEEEEEEecCCcccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999899999999998654444568899999999887776665 55
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 258 PGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 258 p~~~~~p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
+...++|+++++++||.+++++||++|||||+|++.+++++|+||||||||||
T Consensus 254 ~~~~~~p~~~~l~~La~~~r~alGl~l~GvDvI~~~~~~~~~~VidVN~fP~~ 306 (328)
T PLN02941 254 PEVAELPPRPFLEDLARELRRRLGLRLFNFDMIREHGTGDRYYVIDINYFPGY 306 (328)
T ss_pred cccccCCChHHHHHHHHHHHHHhCCceEEEEEEeecCCCCceEEEEecCCCcc
Confidence 66667888999999999999999999999999999877678999999999998
No 3
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.93 E-value=1e-24 Score=202.36 Aligned_cols=227 Identities=18% Similarity=0.251 Sum_probs=163.8
Q ss_pred chhHHHHHHHhCCCeEEEeeCCCCC---C----CCCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCchhHHHHhcCHH
Q 021495 44 LQPKLEILARNKGISFVAIDQNRPL---S----DQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQ 116 (311)
Q Consensus 44 ~~~~l~~~~~~~gi~~v~iD~~~pl---~----~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~ 116 (311)
..+.|++.++++|+++..+|+.... . +-.++|+++-+.........+...+ +.-+++++||+++++.+.||.
T Consensus 11 ~~~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l-e~~g~~~~n~~~~~~~~~dK~ 89 (280)
T TIGR02144 11 DEKMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLL-EALGVPVINSSHVIEACGDKI 89 (280)
T ss_pred HHHHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHH-HHCCCcEECcHHHHHHHhhHH
Confidence 3456889999999999998776521 1 1246899988854422112223333 335799999999999999999
Q ss_pred HHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------
Q 021495 117 SMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE------- 189 (311)
Q Consensus 117 ~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~------- 189 (311)
.+++.|+++ +|++|++..+.+ ...... ....++||+|+||.. |+ ++.++.++.+.+++.+
T Consensus 90 ~~~~~l~~~-------gip~P~t~~~~~-~~~~~~--~~~~~~~P~vvKP~~--g~-~g~gv~~v~~~~~l~~~~~~~~~ 156 (280)
T TIGR02144 90 FTYLKLAKA-------GVPTPRTYLAFD-REAALK--LAEALGYPVVLKPVI--GS-WGRLVALIRDKDELESLLEHKEV 156 (280)
T ss_pred HHHHHHHHC-------CcCCCCeEeeCC-HHHHHH--HHHHcCCCEEEEECc--CC-CcCCEEEECCHHHHHHHHHHHHh
Confidence 999998875 899999988742 211212 234678999999998 44 4688999999987654
Q ss_pred ----CCCCeEEEecccCCCeEEEEEEECCEEEE-EEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCC
Q 021495 190 ----LEPPMLLQEFVNHGGILFKIYIIGETIKV-VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP 264 (311)
Q Consensus 190 ----l~~P~vvQEfInH~G~~~KVyVVGd~v~~-~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p 264 (311)
...++++||||++.|++++++|+|+++.. +.|.+ .+|+.+. +. ++...| .+
T Consensus 157 ~~~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~~r~~-~~~~~~~-------------~~------g~~~~~----~~ 212 (280)
T TIGR02144 157 LGGSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAIYRYS-NHWRTNT-------------AR------GGKAEP----CP 212 (280)
T ss_pred hcCCcCCeEEEEcccCCCCCceEEEEECCEEEEEEEEcC-Cchhhhh-------------hc------CCceec----cC
Confidence 12579999999988999999999999765 45554 3332211 00 111111 22
Q ss_pred ChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 265 PRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 265 ~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
..+.++++|.++.+++|+.++|||++.+.+ | .++|+|||..|||
T Consensus 213 ~~~~~~~~a~~~~~~lg~~~~~vD~~~~~~-g-~~~v~EvN~~p~~ 256 (280)
T TIGR02144 213 LDEEVEELAVKAAEAVGGGVVAIDIFESKE-R-GLLVNEVNHVPEF 256 (280)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEEEcCC-C-CEEEEEEeCCcch
Confidence 345689999999999999999999999753 3 4899999999997
No 4
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.93 E-value=5.3e-24 Score=200.85 Aligned_cols=227 Identities=17% Similarity=0.224 Sum_probs=162.0
Q ss_pred hHHHHHHHhCCCeEEEeeCCCC---CC-----------CCCCccEEEEecCCh--hHHHHHHHHHHhCCCeeeeCchhHH
Q 021495 46 PKLEILARNKGISFVAIDQNRP---LS-----------DQGPFDVVLHKLSGM--EWCKIIEDYRQKHPEVTILDPPDAI 109 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~p---l~-----------~qgp~DviLhK~t~~--~~~~~l~~y~~~hP~v~ViDp~~ai 109 (311)
..+.+.++++|++++.+|.+.. +. ....+|+++-++.+. ......++.++. .++.+++++.++
T Consensus 16 ~~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~le~-~g~~v~n~~~a~ 94 (300)
T PRK10446 16 KRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEM-LGSYPLNESVAI 94 (300)
T ss_pred HHHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHHHHHH-CCCceecCHHHH
Confidence 4578899999999999998752 11 123689999876642 222223334433 468899999999
Q ss_pred HHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc
Q 021495 110 KHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE 189 (311)
Q Consensus 110 ~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~ 189 (311)
+.+.||..+.+.|++. +|++|++..+.. .+.+.. ....-.+||+|+||.. |+ +|.++.++.+.+++..
T Consensus 95 ~~~~dK~~~~~~l~~~-------gip~P~t~~~~~-~~~~~~-~~~~~~~~P~VvKP~~--g~-~g~GV~~v~~~~~~~~ 162 (300)
T PRK10446 95 ARARDKLRSMQLLARQ-------GIDLPVTGIAHS-PDDTSD-LIDMVGGAPLVVKLVE--GT-QGIGVVLAETRQAAES 162 (300)
T ss_pred HhhhcHHHHHHHHHHc-------CCCCCCEEEeCC-HHHHHH-HHHHhCCCCEEEEECC--CC-CcccEEEEcCHHHHHH
Confidence 9999999999999875 899999988742 221212 1222237999999998 44 4788999999876653
Q ss_pred -------CCCCeEEEecccC-CCeEEEEEEECCEEEEE-EEecCCCCccccccccceeeeecccccccccCCCCCCCCCC
Q 021495 190 -------LEPPMLLQEFVNH-GGILFKIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGI 260 (311)
Q Consensus 190 -------l~~P~vvQEfInH-~G~~~KVyVVGd~v~~~-~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~ 260 (311)
++.++++||||++ .|++++|+|+|+++..+ .|.+-. ++|.++ .+. ++...+
T Consensus 163 ~~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~~~r~~~~----~~~~~n--------~~~------g~~~~~-- 222 (300)
T PRK10446 163 VIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKE----GDFRSN--------LHR------GGAASV-- 222 (300)
T ss_pred HHHHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEEEEEecCC----Cchhhe--------ecc------CCeecc--
Confidence 4678999999987 49999999999997765 443322 123222 111 111111
Q ss_pred CCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 261 AELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 261 ~~~p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
.+..+.++++|.++.++||+.+.|+|++.++ .| +||+|||..|||
T Consensus 223 --~~l~~~~~~~a~~a~~alg~~~~gvD~~~~~-~g--~~vlEvN~~pg~ 267 (300)
T PRK10446 223 --ASITPQEREIAIKAARTMALDVAGVDILRAN-RG--PLVMEVNASPGL 267 (300)
T ss_pred --CCCCHHHHHHHHHHHHHhCCCEEEEEEEEcC-CC--cEEEEEECCCCh
Confidence 1235668999999999999999999999874 34 689999999997
No 5
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.92 E-value=9e-24 Score=194.62 Aligned_cols=229 Identities=19% Similarity=0.267 Sum_probs=165.6
Q ss_pred chhHHHHHHHhCCCeEEEeeCCCC---CCC----CCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCchhHHHHhcCHH
Q 021495 44 LQPKLEILARNKGISFVAIDQNRP---LSD----QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQ 116 (311)
Q Consensus 44 ~~~~l~~~~~~~gi~~v~iD~~~p---l~~----qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~ 116 (311)
..+.|.+.++++|+.+..+|++.. +.. ...+|+|+-+..+......+.+.++. -++++++++++++.+.||.
T Consensus 12 ~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~~dK~ 90 (277)
T TIGR00768 12 DEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLES-LGVPVINSSDAILNAGDKF 90 (277)
T ss_pred HHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHH-CCCeeeCCHHHHHHHhhHH
Confidence 455689999999999999987642 221 34589999888432222344455544 4799999999999999999
Q ss_pred HHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC------
Q 021495 117 SMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------ 190 (311)
Q Consensus 117 ~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l------ 190 (311)
.+++.|+++ +|++|++..+.+ .+++.. ....++||+|+||..++| |.++.++.+.+++..+
T Consensus 91 ~~~~~l~~~-------gi~~P~t~~~~~-~~~~~~--~~~~~~~p~vvKP~~g~~---g~gv~~i~~~~~l~~~~~~~~~ 157 (277)
T TIGR00768 91 LTSQLLAKA-------GLPQPRTGLAGS-PEEALK--LIEEIGFPVVLKPVFGSW---GRLVSLARDKQAAETLLEHFEQ 157 (277)
T ss_pred HHHHHHHHC-------CCCCCCEEEeCC-HHHHHH--HHHhcCCCEEEEECcCCC---CCceEEEcCHHHHHHHHHHHHH
Confidence 999999875 789999988852 222222 124678999999998443 5789999999887532
Q ss_pred -C---CCeEEEecccCC-CeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC
Q 021495 191 -E---PPMLLQEFVNHG-GILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP 265 (311)
Q Consensus 191 -~---~P~vvQEfInH~-G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~ 265 (311)
. .++++||||++. |++++|+|+|+++..+.++..+ ++|.++ .+..+ ...+ .+.
T Consensus 158 ~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~~~r~~~----~~~~~n--------~~~g~------~~~~----~~l 215 (277)
T TIGR00768 158 LNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAAIYRITS----GHWRTN--------LARGG------KAEP----CPL 215 (277)
T ss_pred hcccCCcEEEEeeecCCCCceEEEEEECCEEEEEEEEcCC----Cchhhh--------hhcCC------eeee----cCC
Confidence 2 379999999977 5999999999998875444321 122211 11111 1111 112
Q ss_pred hHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 266 RPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 266 ~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
.++++++|.++.++||+.++|||++++. +| +++|+|||..||+
T Consensus 216 ~~~~~~~a~~~~~~l~~~~~~vD~~~~~-~g-~~~viEiN~~p~~ 258 (277)
T TIGR00768 216 TEEIEELAIKAAKALGLDVVGIDLLESE-DR-GLLVNEVNPNPEF 258 (277)
T ss_pred CHHHHHHHHHHHHHhCCCeEEEEEEEcC-CC-CeEEEEEcCCcch
Confidence 3568999999999999999999999986 34 6999999999996
No 6
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=8.7e-24 Score=201.54 Aligned_cols=200 Identities=21% Similarity=0.265 Sum_probs=151.2
Q ss_pred CCccEEEEecCChhHH-HHHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcc
Q 021495 72 GPFDVVLHKLSGMEWC-KIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 150 (311)
Q Consensus 72 gp~DviLhK~t~~~~~-~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~ 150 (311)
..+|+++-|....... -.+.+.. +.-|++||||+.+|..|.||..+++.|+.. ++++|+++++.+. ...
T Consensus 77 ~~~D~i~~R~~~~~~~~~~~~~~~-E~~G~~viN~p~~i~~~~nK~~~~~~l~~~-------~ipvP~T~i~~~~-~~~- 146 (318)
T COG0189 77 DELDVIIMRKDPPFDFATRFLRLA-ERKGVPVINDPQSIRRCRNKLYTTQLLAKA-------GIPVPPTLITRDP-DEA- 146 (318)
T ss_pred ccCCEEEEecCCchhhHHHHHHHH-HHcCCeEECCHHHHHhhhhHHHHHHHHHhc-------CCCCCCEEEEcCH-HHH-
Confidence 3789999998764322 1111222 346899999999999999999999999874 8999999999643 222
Q ss_pred hhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcc-ccccC--------CCCeEEEecccCCCeEEEEEEECCEEEEEEE
Q 021495 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF-SLSEL--------EPPMLLQEFVNHGGILFKIYIIGETIKVVRR 221 (311)
Q Consensus 151 ~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~-~L~~l--------~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R 221 (311)
.......++||+|+||+. || ++.++.++.+.+ .|.++ ..++++||||+..+++.|.++|||...++.+
T Consensus 147 ~~~~~~~~g~pvVlKp~~--Gs-~G~gV~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~y 223 (318)
T COG0189 147 AEFVAEHLGFPVVLKPLD--GS-GGRGVFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAIY 223 (318)
T ss_pred HHHHHHhcCCCEEEeeCC--CC-CccceEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEeCCEEeEEe
Confidence 334567899999999998 77 789999999998 66553 2369999999999888888888888776543
Q ss_pred ---e--cCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCC
Q 021495 222 ---F--SLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMR 296 (311)
Q Consensus 222 ---~--Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg 296 (311)
+ +-. +|++| .+.++..++ .+.+++++++|.++.++||+.++|+|++.+. .
T Consensus 224 ~~~R~~~~~-----~~R~N--------------~a~Gg~~e~----~~l~~e~~elA~kaa~~lGl~~~GVDiie~~-~- 278 (318)
T COG0189 224 ALARIPASG-----DFRSN--------------LARGGRAEP----CELTEEEEELAVKAAPALGLGLVGVDIIEDK-D- 278 (318)
T ss_pred eeccccCCC-----Cceee--------------ccccccccc----cCCCHHHHHHHHHHHHHhCCeEEEEEEEecC-C-
Confidence 2 222 44433 234444444 3346778999999999999999999999873 3
Q ss_pred CeEEEEEecCCCCC
Q 021495 297 DVFYVIDINYFPGR 310 (311)
Q Consensus 297 ~~~~ViDVNyfPG~ 310 (311)
.+||+|||..|++
T Consensus 279 -g~~V~EVN~sP~~ 291 (318)
T COG0189 279 -GLYVTEVNVSPTG 291 (318)
T ss_pred -CcEEEEEeCCCcc
Confidence 4899999999975
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=99.90 E-value=2.4e-23 Score=184.37 Aligned_cols=163 Identities=28% Similarity=0.433 Sum_probs=92.2
Q ss_pred cCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc---
Q 021495 113 HNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE--- 189 (311)
Q Consensus 113 ~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~--- 189 (311)
.||..+++.|++. +|++|++.++.+ .+...+.+.+.+ +||+|+||.. |+ .+.++.++.+.+++..
T Consensus 2 ~dK~~~~~~l~~~-------gipvP~t~~~~~-~~~~~~~~~~~~-~~p~ViKp~~--g~-~G~gV~~i~~~~~~~~~l~ 69 (190)
T PF08443_consen 2 EDKLLTLQLLAKA-------GIPVPETRVTNS-PEEAKEFIEELG-GFPVVIKPLR--GS-SGRGVFLINSPDELESLLD 69 (190)
T ss_dssp HBHHHHHHHHHHT-------T-----EEEESS-HHHHHHHHHHH---SSEEEE-SB----------EEEESHCHHHHHHH
T ss_pred CCHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHHHHHhc-CCCEEEeeCC--CC-CCCEEEEecCHHHHHHHHH
Confidence 4899999999884 899999999963 233333334444 8999999988 55 4789999999987765
Q ss_pred ----CCCCeEEEecccCCC-eEEEEEEECCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCC
Q 021495 190 ----LEPPMLLQEFVNHGG-ILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP 264 (311)
Q Consensus 190 ----l~~P~vvQEfInH~G-~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p 264 (311)
.+.|+++|+||++.+ +++||+|||++++.+.+++-++ ++|.+| . +.++..++ ..
T Consensus 70 ~~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~~r~~~~---~d~r~n--------~------~~g~~~~~----~~ 128 (190)
T PF08443_consen 70 AFKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAYRRSSPE---GDFRTN--------L------SRGGKVEP----YD 128 (190)
T ss_dssp -----TTT-EEEE----SS---EEEEEETTEEEEEEE-----------------------------------EE------
T ss_pred HHHhccCcceEeccccCCCCcEEEEEEECCEEEEEEEEecCc---ccchhh--------h------ccCceEEE----ec
Confidence 367999999999875 9999999999999876665333 244433 1 11222222 12
Q ss_pred ChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCC
Q 021495 265 PRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGRY 311 (311)
Q Consensus 265 ~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~~ 311 (311)
..+++.++|.++.++||++++|||++..+ + .|||+|||.+|||.
T Consensus 129 l~~e~~~~a~~~~~~lgl~~~giDi~~~~--~-~~~v~EvN~~~~~~ 172 (190)
T PF08443_consen 129 LPEEIKELALKAARALGLDFAGIDILDTN--D-GPYVLEVNPNPGFR 172 (190)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEEEEEEET--T-EEEEEEEETT---T
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEEEecC--C-CeEEEEecCCchHh
Confidence 24678999999999999999999976543 3 59999999999983
No 8
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.86 E-value=3.7e-20 Score=174.07 Aligned_cols=232 Identities=19% Similarity=0.214 Sum_probs=164.0
Q ss_pred hHHHHHHHhCCCeEEEeeCCCCCCC---CCCccEEEEecCChh-HHHHHHHHHHhCCCeeeeCc-hhHHHHhcCHHHHHH
Q 021495 46 PKLEILARNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGME-WCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQ 120 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~---qgp~DviLhK~t~~~-~~~~l~~y~~~hP~v~ViDp-~~ai~~l~dR~~~l~ 120 (311)
..+.+.++++|++++.|+.+..+.. ...+|+|+-.+.+.. ....++.+++.. +++++.+ +.+++.+.||..+.+
T Consensus 26 ~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~-gi~~~g~~~~~~~~~~dK~~~k~ 104 (304)
T PRK01372 26 AAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELL-GIPYTGSGVLASALAMDKLRTKL 104 (304)
T ss_pred HHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCCCCCccHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHH
Confidence 4578899999999999998876554 456899998754310 112355566554 8999977 799999999999999
Q ss_pred HHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCCC
Q 021495 121 DVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPP 193 (311)
Q Consensus 121 ~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P 193 (311)
.|.++ +|++|++..+.+..+ ... ....++||+|+||..++| |.++.++.+.+++.+ ...+
T Consensus 105 ~l~~~-------gIp~p~~~~~~~~~~-~~~--~~~~~~~P~ivKP~~g~~---s~Gv~~v~~~~el~~~~~~~~~~~~~ 171 (304)
T PRK01372 105 VWQAA-------GLPTPPWIVLTREED-LLA--AIDKLGLPLVVKPAREGS---SVGVSKVKEEDELQAALELAFKYDDE 171 (304)
T ss_pred HHHHC-------CCCCCCEEEEeCcch-HHH--HHhhcCCCEEEeeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCc
Confidence 98875 899999999864322 112 245789999999999554 577999999988754 2578
Q ss_pred eEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHH
Q 021495 194 MLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLER 271 (311)
Q Consensus 194 ~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~ 271 (311)
+++||||+ |++|.|.|+|+++....+...+ .+.++|......+.. ....| ..++. .+.+++
T Consensus 172 ~lvEe~i~--G~E~~v~vi~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~---~~~~p--~~~~~~~~~~l~~ 234 (304)
T PRK01372 172 VLVEKYIK--GRELTVAVLGGKALPVIEIVPA----------GEFYDYEAKYLAGGT---QYICP--AGLPAEIEAELQE 234 (304)
T ss_pred EEEEcccC--CEEEEEEEECCCccceEEEEec----------CCEEeeeccccCCCe---EEEeC--CCCCHHHHHHHHH
Confidence 99999996 9999999999987543222111 112333222211100 00011 12222 456889
Q ss_pred HHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 272 LARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 272 lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
+|.++.++||+. +++||++++. +| ++||+|||..||+
T Consensus 235 ~a~~~~~~lg~~g~~~iD~~~~~-~g-~~~viEvN~~p~~ 272 (304)
T PRK01372 235 LALKAYRALGCRGWGRVDFMLDE-DG-KPYLLEVNTQPGM 272 (304)
T ss_pred HHHHHHHHhCCcceEEEEEEEcC-CC-CEEEEEecCCCCC
Confidence 999999999996 5569999986 35 6999999999986
No 9
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.85 E-value=8.9e-20 Score=172.16 Aligned_cols=235 Identities=18% Similarity=0.199 Sum_probs=157.9
Q ss_pred HHHHHHHhCCCeEEEeeCCCC-------CC--------CCCCccEEEEecCChh-HHHHHHHHHHhCCCeeeeCc-hhHH
Q 021495 47 KLEILARNKGISFVAIDQNRP-------LS--------DQGPFDVVLHKLSGME-WCKIIEDYRQKHPEVTILDP-PDAI 109 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~p-------l~--------~qgp~DviLhK~t~~~-~~~~l~~y~~~hP~v~ViDp-~~ai 109 (311)
.+++.++++|++++.++.+.. +. ....+|+|+.-+.+.. -...++...+. -+++++.+ +.++
T Consensus 22 ~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~-~gip~~g~~~~~~ 100 (315)
T TIGR01205 22 AVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGEDGTIQGLLEL-MGIPYTGSGVLAS 100 (315)
T ss_pred HHHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCCcHHHHHHHH-cCCCccCCCHHHH
Confidence 468888999999999998861 11 1146899987543320 01234444443 47999986 8999
Q ss_pred HHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchh---hHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccc
Q 021495 110 KHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQ---VFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS 186 (311)
Q Consensus 110 ~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~---l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~ 186 (311)
..+.||..|.+.|+++ +|++|++..+..+.....+. .....++||+|+||..++| |.++.++.|.++
T Consensus 101 ~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~P~vvKP~~~~~---s~Gv~~v~~~~e 170 (315)
T TIGR01205 101 ALSMDKLLTKLLWKAL-------GLPTPDYIVLTQNRASADELECEQVAEPLGFPVIVKPAREGS---SVGVSKVKSEEE 170 (315)
T ss_pred HHHHCHHHHHHHHHHC-------CCCCCCEEEEecccccchhhhHHHHHHhcCCCEEEEeCCCCC---ccCEEEECCHHH
Confidence 9999999999999875 89999999886122111110 1124789999999998443 578999999988
Q ss_pred ccc-------CCCCeEEEecccCCCeEEEEEEEC-CEEEE-EEEecCCCCccccccccceeeeecccccccccCCCCCCC
Q 021495 187 LSE-------LEPPMLLQEFVNHGGILFKIYIIG-ETIKV-VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLD 257 (311)
Q Consensus 187 L~~-------l~~P~vvQEfInH~G~~~KVyVVG-d~v~~-~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~ 257 (311)
|.+ ...++++||||+ |++|.|.|+| ++... +.+.... ..+++|......+.. ....
T Consensus 171 l~~~~~~~~~~~~~~lvEe~i~--G~e~~v~vi~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~---~~~~ 235 (315)
T TIGR01205 171 LQAALDEAFEYDEEVLVEQFIK--GRELEVSILGNEEALPIIEIVPEI----------EGFYDYEAKYLDGST---EYVI 235 (315)
T ss_pred HHHHHHHHHhcCCcEEEEcCCC--CEEEEEEEECCCCccceEEecCCC----------CCeeCcccccCCCCe---eEEe
Confidence 864 367899999994 9999999999 44321 2211100 002223221111100 0001
Q ss_pred CCCCCCCC--hHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCCCC
Q 021495 258 PGIAELPP--RPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGRY 311 (311)
Q Consensus 258 p~~~~~p~--~~~~~~lA~~l~~~LGL-~lfG~Dvi~~~~tg~~~~ViDVNyfPG~~ 311 (311)
| +.+++ .+.++++|.++.++||+ .+++||++++.+ | ++||+|||..||+.
T Consensus 236 p--~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vD~~~~~~-g-~~~viEvN~~pg~~ 288 (315)
T TIGR01205 236 P--APLDEELEEKIKELALKAYKALGCRGLARVDFFLDEE-G-EIYLNEINTIPGMT 288 (315)
T ss_pred C--CCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeCC-C-CEEEEEeeCCCCCC
Confidence 1 11221 45789999999999999 588899999853 4 68999999999973
No 10
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=99.81 E-value=2.2e-18 Score=162.39 Aligned_cols=226 Identities=18% Similarity=0.213 Sum_probs=154.5
Q ss_pred HHHHHHhCCCeEEEeeCCCCCC----CCCCccEEEEecCChh-HHHHHHHHHHhCCCeeeeCc-hhHHHHhcCHHHHHHH
Q 021495 48 LEILARNKGISFVAIDQNRPLS----DQGPFDVVLHKLSGME-WCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQD 121 (311)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl~----~qgp~DviLhK~t~~~-~~~~l~~y~~~hP~v~ViDp-~~ai~~l~dR~~~l~~ 121 (311)
+.+..++.|++++.+|.+..+. ....+|+++..+.+.. -...++.+++. -+++++.+ +.++..+.||..+.+.
T Consensus 24 i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~-~gip~~G~~~~a~~i~~DK~~~k~~ 102 (299)
T PRK14571 24 VKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDF-LGIRYTGSDAFSSMICFDKLLTYRF 102 (299)
T ss_pred HHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHH-cCCCccCCCHHHHHHHcCHHHHHHH
Confidence 6777889999999998776432 2357899998876531 01345666655 47999865 8999999999998887
Q ss_pred HHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC-------CCCe
Q 021495 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------EPPM 194 (311)
Q Consensus 122 l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l-------~~P~ 194 (311)
|+. +|++|++..+... .....++||+|+||..++| |.++.++.|.++|.+. ..++
T Consensus 103 l~~--------~ip~p~~~~~~~~-------~~~~~l~~P~vvKP~~g~~---s~Gv~~v~~~~el~~~~~~~~~~~~~v 164 (299)
T PRK14571 103 LKG--------TVEIPDFVEIKEF-------MKTSPLGYPCVVKPRREGS---SIGVFICESDEEFQHALKEDLPRYGSV 164 (299)
T ss_pred Hhc--------CCCCCCEEEEech-------hhhhhcCCCEEEecCCCCC---cCCEEEECCHHHHHHHHHHHHhhCCcE
Confidence 752 5899999888421 1234689999999988444 5778999999887542 3579
Q ss_pred EEEecccCCCeEEEEEEECCE--EEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHH
Q 021495 195 LLQEFVNHGGILFKIYIIGET--IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLE 270 (311)
Q Consensus 195 vvQEfInH~G~~~KVyVVGd~--v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~ 270 (311)
++||||+ |+++.|.|+|+. +.+ +|-. +......+|+|...+..+... .. .++.+++ .+.++
T Consensus 165 lVEeyI~--G~E~sv~vl~~~~~~~v-----l~~~---e~~~~~~~~~~~~k~~~g~~~---~~--~p~~l~~~~~~~i~ 229 (299)
T PRK14571 165 IVQEYIP--GREMTVSILETEKGFEV-----LPIL---ELRPKRRFYDYVAKYTKGETE---FI--LPAPLNPEEERLVK 229 (299)
T ss_pred EEEcccc--ceEEEEEEEcCCCCeee-----eceE---EEecCCCccccccccCCCCee---EE--eCCCCCHHHHHHHH
Confidence 9999995 999999999863 211 1110 100111233333222111110 00 1122222 45688
Q ss_pred HHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 271 RLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 271 ~lA~~l~~~LGL-~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
++|.++.++||+ .++++|+++++ | ++||+|||..||+
T Consensus 230 ~~a~~~~~~lg~~g~~rvD~~~~~--~-~~~viEiN~~Pg~ 267 (299)
T PRK14571 230 ETALKAFVEAGCRGFGRVDGIFSD--G-RFYFLEINTVPGL 267 (299)
T ss_pred HHHHHHHHHhCCCceEEEEEEEEC--C-cEEEEEeeCCCCC
Confidence 999999999998 57789999873 3 5899999999997
No 11
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.81 E-value=2.9e-18 Score=174.45 Aligned_cols=230 Identities=16% Similarity=0.184 Sum_probs=150.6
Q ss_pred hHHHHHHHhCCCeEEEeeCCCCCCC--CCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHH
Q 021495 46 PKLEILARNKGISFVAIDQNRPLSD--QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVA 123 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~--qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~ 123 (311)
+.+++.|+++|+.++.+|.+..+-. +| -+.++-+ + ....++++.+++.+.||..+.+.|+
T Consensus 245 ~~Ii~~a~~~Gi~~~~~~se~~~~~L~~g-~~~~~~~---------------~--s~~~~~s~~ai~~~~DK~~tk~lL~ 306 (547)
T TIGR03103 245 RIIVDEARRRGIEVEVLDAEGGLFRLSLG-GRSIRCR---------------E--SLSELTSAVAMSLCDDKRLTRRLVS 306 (547)
T ss_pred HHHHHHHHHcCCcEEEECCCCCEEEecCC-ceEEEEE---------------e--ccCCCCCHHHHHHhcCHHHHHHHHH
Confidence 5689999999999999875432111 11 1111111 1 2336779999999999999999998
Q ss_pred hccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEE-EcCcccccc-------CCCCeE
Q 021495 124 DLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-AYDRFSLSE-------LEPPML 195 (311)
Q Consensus 124 ~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~l-v~~~~~L~~-------l~~P~v 195 (311)
++ +|++|++..+.+ .+...+.. ..++ |+|+||.. |+ ++.+|.+ +.++++|.+ ...+++
T Consensus 307 ~a-------GIpVP~~~~~~~-~~~~~~~~--~~~G-~vVVKP~~--G~-~G~Gv~v~v~~~~eL~~a~~~a~~~~~~vl 372 (547)
T TIGR03103 307 EA-------GLQVPEQQLAGN-GEAVEAFL--AEHG-AVVVKPVR--GE-QGKGISVDVRTPDDLEAAIAKARQFCDRVL 372 (547)
T ss_pred Hc-------CcCCCCEEEECC-HHHHHHHH--HHhC-CEEEEECC--CC-CCcCeEEecCCHHHHHHHHHHHHhcCCcEE
Confidence 75 899999998853 22222222 2345 79999987 54 5788997 899988754 356899
Q ss_pred EEecccCCCeEEEEEEECCEEEEEEEecCCCCccccc---c-----cc-------ce-----------------eeeecc
Q 021495 196 LQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKREL---A-----KV-------VS-----------------VFRFPR 243 (311)
Q Consensus 196 vQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~---~-----~~-------~~-----------------~~~~~~ 243 (311)
+|+|| .|.++||+|||++++++.++-.+.+--+.. . .| .+ -+++++
T Consensus 373 vEe~i--~G~d~Rv~Vigg~vvaa~~R~~~~V~GDG~~ti~~Lie~~n~~~~~~~~~~~~i~~d~~~~~~l~~~g~~~~~ 450 (547)
T TIGR03103 373 LERYV--PGEDLRLVVIDFEVVAAAVRRPPEVIGDGRSSIRDLIEKQSRRRAAATGGESRIPLDAETERCLAEAGLDLDD 450 (547)
T ss_pred EEEec--cCCeEEEEEECCEEEEEEEecCcEEEeCCccCHHHHHHHHhcCccCCCCCcCccCCCHHHHHHHHHcCCCccc
Confidence 99999 599999999999999875443343210000 0 00 00 011211
Q ss_pred ccccc---------ccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCC
Q 021495 244 VSSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGRY 311 (311)
Q Consensus 244 vs~~~---------~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~~ 311 (311)
+-..+ +.+.++.... ..-...+...++|.++.+++||.+.|+|+|+++.++..|+|||||.-||+.
T Consensus 451 V~~~G~~v~l~~~~Nl~tGg~~~d--vtd~~~~~~~~~A~~aa~~~gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~ 525 (547)
T TIGR03103 451 VLPEGQRLRVRRTANLHTGGTIHD--VTEQLHPDLREAAERAARALDIPVVGIDFLVPDVTGPDYVIIEANERPGLA 525 (547)
T ss_pred cCCCCCEEEEecCCcccCCCeeEe--cccccCHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCeEEEEecCCcccc
Confidence 11100 0111111111 001235678999999999999999999999986455568999999999973
No 12
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=99.80 E-value=3.3e-18 Score=163.92 Aligned_cols=207 Identities=19% Similarity=0.189 Sum_probs=143.0
Q ss_pred CccEEEEecCC---hhHHHHHHHHHHhCCCeeeeCc-hhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC
Q 021495 73 PFDVVLHKLSG---MEWCKIIEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS 148 (311)
Q Consensus 73 p~DviLhK~t~---~~~~~~l~~y~~~hP~v~ViDp-~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~ 148 (311)
.+|+++.=+.+ +. ..++.+++. -+++.+-+ +.+...++||..|-+.++++ +|++|++..+......
T Consensus 81 ~~D~vf~~lhG~~ged--g~iq~lle~-~gipy~G~~~~a~~l~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~ 150 (333)
T PRK01966 81 EVDVVFPVLHGPPGED--GTIQGLLEL-LGIPYVGCGVLASALSMDKILTKRLLAAA-------GIPVAPYVVLTRGDWE 150 (333)
T ss_pred cCCEEEEccCCCCCCC--cHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEeccccc
Confidence 57888654433 22 235666654 57888765 78999999999999999875 8999999988543221
Q ss_pred --cchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCCeEEEEEEECCEEEEE
Q 021495 149 --IPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVV 219 (311)
Q Consensus 149 --~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G~~~KVyVVGd~v~~~ 219 (311)
... .....++||+|+||..++| |.++.+|.+.++|.+ .+.++++|+||+ |+++.|.|+|+...+
T Consensus 151 ~~~~~-~~~~~~~~P~vVKP~~~gs---S~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v~vl~~~~~~- 223 (333)
T PRK01966 151 EASLA-EIEAKLGLPVFVKPANLGS---SVGISKVKNEEELAAALDLAFEYDRKVLVEQGIK--GREIECAVLGNDPKA- 223 (333)
T ss_pred hhhHH-HHHHhcCCCEEEEeCCCCC---ccCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEEEEECCCCeE-
Confidence 111 1235789999999988544 578999999988864 367899999995 899999999963111
Q ss_pred EEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCC
Q 021495 220 RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLR-LFNIDMIREHGMR 296 (311)
Q Consensus 220 ~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg 296 (311)
+|. .++....++|+|...+..+.. ...+++.+++ .+.++++|.++.++||++ ++.+|++++. +|
T Consensus 224 ----~~~---~ei~~~~~~~d~~~ky~~~~~-----~~~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~rvDf~~~~-~g 290 (333)
T PRK01966 224 ----SVP---GEIVKPDDFYDYEAKYLDGSA-----ELIIPADLSEELTEKIRELAIKAFKALGCSGLARVDFFLTE-DG 290 (333)
T ss_pred ----ccc---EEEecCCceEcHHHccCCCCc-----eEEeCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEcC-CC
Confidence 221 122222246666554432211 0111223333 567899999999999996 4569999975 34
Q ss_pred CeEEEEEecCCCCC
Q 021495 297 DVFYVIDINYFPGR 310 (311)
Q Consensus 297 ~~~~ViDVNyfPG~ 310 (311)
++||+|||..||+
T Consensus 291 -~~~vlEiNt~Pg~ 303 (333)
T PRK01966 291 -EIYLNEINTMPGF 303 (333)
T ss_pred -CEEEEEeeCCCCC
Confidence 6899999999997
No 13
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.80 E-value=3.3e-18 Score=161.43 Aligned_cols=225 Identities=16% Similarity=0.169 Sum_probs=152.9
Q ss_pred HHHHHHhCCCeEEEeeCCC-CCCC---CCCccEEEEecCChhH-HHHHHHHHHhCCCeeeeC-chhHHHHhcCHHHHHHH
Q 021495 48 LEILARNKGISFVAIDQNR-PLSD---QGPFDVVLHKLSGMEW-CKIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQD 121 (311)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~-pl~~---qgp~DviLhK~t~~~~-~~~l~~y~~~hP~v~ViD-p~~ai~~l~dR~~~l~~ 121 (311)
..+..++.|++.+.+|.+. .+.. ...+|+++-=+.+..- ...++..++. -+++++- .+.++..++||..+-+.
T Consensus 27 v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~-~gip~~Gs~~~a~~l~~DK~~~k~~ 105 (296)
T PRK14569 27 VLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALHGEDGENGRVSALLEM-LEIKHTSSSMKSSVITMDKMISKEI 105 (296)
T ss_pred HHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHH-cCCCeeCCCHHHHHHHHCHHHHHHH
Confidence 5667788999999999863 2111 3467877654433211 1335555555 3688765 56999999999999999
Q ss_pred HHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC------CCCeE
Q 021495 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------EPPML 195 (311)
Q Consensus 122 l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l------~~P~v 195 (311)
|+++ +|+||++..+.... . ....++||+|+||..++ | |.++++|.++++|... ..+++
T Consensus 106 l~~~-------gIptp~~~~~~~~~----~--~~~~~~~P~vVKP~~gg-s--s~Gv~~v~~~~eL~~a~~~~~~~~~~l 169 (296)
T PRK14569 106 LMHH-------RMPTPMAKFLTDKL----V--AEDEISFPVAVKPSSGG-S--SIATFKVKSIQELKHAYEEASKYGEVM 169 (296)
T ss_pred HHHC-------CCCCCCeEEEchhh----h--hHhhcCCCEEEEeCCCC-C--CcCeEEcCCHHHHHHHHHHHHhcCCEE
Confidence 9875 89999998875311 1 23578999999998733 3 6889999999988642 24799
Q ss_pred EEecccCCCeEEEEEEECCEEEE-EEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHH
Q 021495 196 LQEFVNHGGILFKIYIIGETIKV-VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERL 272 (311)
Q Consensus 196 vQEfInH~G~~~KVyVVGd~v~~-~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~l 272 (311)
+|||| .|++|.|.|+|+.+.. ++..+.. .++++....... + ...+++.+++ .+.++++
T Consensus 170 vEefI--~G~E~tv~vl~~~~~~~~~i~~~~-----------~~~~~~~k~~~~-~-----~~~~P~~l~~~~~~~i~~~ 230 (296)
T PRK14569 170 IEQWV--TGKEITVAIVNDEVYSSVWIEPQN-----------EFYDYESKYSGK-S-----IYHSPSGLCEQKELEVRQL 230 (296)
T ss_pred EEccc--ccEEEEEEEECCcCcceEEEecCC-----------CcCChhhccCCC-c-----EEEeCCCCCHHHHHHHHHH
Confidence 99999 5899999999987532 2222111 123332222110 0 0001122222 4579999
Q ss_pred HHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 273 ARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 273 A~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
|.++.++||+. +++||++.+. +| ++||+|||..|||
T Consensus 231 a~~~~~~Lg~~G~~rvD~~~~~-~g-~~~vlEIN~~Pg~ 267 (296)
T PRK14569 231 AKKAYDLLGCSGHARVDFIYDD-RG-NFYIMEINSSPGM 267 (296)
T ss_pred HHHHHHHhCCceEEEEEEEEcC-CC-CEEEEEeeCCCCC
Confidence 99999999986 4469999975 34 6899999999997
No 14
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=99.80 E-value=5e-18 Score=161.56 Aligned_cols=218 Identities=18% Similarity=0.230 Sum_probs=143.9
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCC-------------------------CC-----CCCccEEEEecCCh---h--HHHH
Q 021495 45 QPKLEILARNKGISFVAIDQNRPL-------------------------SD-----QGPFDVVLHKLSGM---E--WCKI 89 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl-------------------------~~-----qgp~DviLhK~t~~---~--~~~~ 89 (311)
...|...|.++|++...++++.-. .+ -..||+++-|-... . ....
T Consensus 20 t~~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~~~ 99 (312)
T TIGR01380 20 TFALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDAVLMRKDPPFDMEYIYATY 99 (312)
T ss_pred HHHHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCEEEEeCCCCCChhhhHHHH
Confidence 335888999999999887776311 00 03689999886332 1 1223
Q ss_pred HHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcC
Q 021495 90 IEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVV 169 (311)
Q Consensus 90 l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a 169 (311)
+.++.+. -++.|+||+++++.+.||..+++.+ -++|++++.. +.+++.+.+... + |+|+||+.
T Consensus 100 ~l~~le~-~g~~viN~p~~i~~~~dK~~~~~~~-----------~~vP~T~v~~-~~~~~~~~~~~~--g-~vVvKPl~- 162 (312)
T TIGR01380 100 LLELADP-TGTLVINSPQGLRDANEKLFTLQFP-----------KVIPPTLVTR-DKAEIRAFLAEH--G-DIVLKPLD- 162 (312)
T ss_pred HHHHHHh-CCCeEEeCHHHHHhhhhHHHHhhCc-----------CCCCCEEEeC-CHHHHHHHHHHc--C-CEEEEECC-
Confidence 4444444 4799999999999999999876542 1589998764 333333323333 3 99999999
Q ss_pred CCCCcceeeEEEcCc-ccc-------ccC-CCCeEEEecccC-CCeEEEEEEECCEEEE-EE-EecCCCCccccccccce
Q 021495 170 DGSAKSHELFLAYDR-FSL-------SEL-EPPMLLQEFVNH-GGILFKIYIIGETIKV-VR-RFSLPNVSKRELAKVVS 237 (311)
Q Consensus 170 ~GS~~sh~m~lv~~~-~~L-------~~l-~~P~vvQEfInH-~G~~~KVyVVGd~v~~-~~-R~Slpn~~~~~~~~~~~ 237 (311)
|+ ++.++..+.+. ..+ ..+ ..|+++|+||+. .+.++||+|||++++. +. |.+.++ +|.+|
T Consensus 163 -G~-~G~gv~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv~~ai~R~~~~g----d~r~N-- 234 (312)
T TIGR01380 163 -GM-GGEGIFRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPIGAAVARIPAGG----EFRGN-- 234 (312)
T ss_pred -CC-CCceEEEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEEEEEEEecCCCC----Ccccc--
Confidence 55 57888888653 222 222 468999999985 3679999999999865 44 544431 33332
Q ss_pred eeeecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHH---HHhCCcEeEEEEEEeCCCCCeEEEEEecCC-C-CC
Q 021495 238 VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELR---HRLGLRLFNIDMIREHGMRDVFYVIDINYF-P-GR 310 (311)
Q Consensus 238 ~~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~---~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyf-P-G~ 310 (311)
+ +.++...+ .+++++..++|.++. +++||.+.|||+| | ++|+|||.. | ||
T Consensus 235 ------~------~~Gg~~~~----~~l~~e~~~ia~~~~~~~~~~gl~~agVDii-----g--~~v~EvN~~~p~~~ 289 (312)
T TIGR01380 235 ------L------AVGGRGEA----TELSERDREICADVAPELKRRGLLFVGIDVI-----G--GYLTEVNVTSPTGI 289 (312)
T ss_pred ------c------cCCceeec----cCCCHHHHHHHHHHHHHHHhcCCcEEEEEEe-----C--CEEEEEecCCcchH
Confidence 1 11222222 223455678888887 6779999999999 3 369999976 4 54
No 15
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.79 E-value=9.1e-18 Score=161.82 Aligned_cols=209 Identities=17% Similarity=0.162 Sum_probs=139.2
Q ss_pred CccEE---EEecCChhHHHHHHHHHHhCCCeeeeC-chhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCC-
Q 021495 73 PFDVV---LHKLSGMEWCKIIEDYRQKHPEVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSL- 147 (311)
Q Consensus 73 p~Dvi---LhK~t~~~~~~~l~~y~~~hP~v~ViD-p~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~- 147 (311)
.+|++ +|.-.+++ ..+|.+++. -+++++- ++.++..++||..|-+.|+++ +|++|+++.+.....
T Consensus 88 ~~d~~f~~~hg~~gEd--g~iq~~le~-~gipy~Gs~~~a~~i~~DK~~~k~~l~~~-------GI~~p~~~~~~~~~~~ 157 (347)
T PRK14572 88 DADIAFLGLHGGAGED--GRIQGFLDT-LGIPYTGSGVLASALAMDKTRANQIFLQS-------GQKVAPFFELEKLKYL 157 (347)
T ss_pred CcCEEEEecCCCCCCC--cHHHHHHHH-cCcCcCCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEEccccc
Confidence 35764 46555542 235555554 4788874 588999999999999999874 899999998853211
Q ss_pred -Ccchh-hHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCCeEEEEEEECC----
Q 021495 148 -SIPDQ-VFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGE---- 214 (311)
Q Consensus 148 -~~~~~-l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G~~~KVyVVGd---- 214 (311)
...+. .....++||+|+||..++ | |.+++++.++++|.. .+.++++|||| .|++|.|.|+|+
T Consensus 158 ~~~~~~~~~~~~l~~PvvVKP~~gg-s--S~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI--~G~E~sv~vi~~~~~g 232 (347)
T PRK14572 158 NSPRKTLLKLESLGFPQFLKPVEGG-S--SVSTYKITNAEQLMTLLALIFESDSKVMSQSFL--SGTEVSCGVLERYRGG 232 (347)
T ss_pred cChHHHHHHHHhcCCCEEEecCCCC-C--CCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCc--ccEEEEEEEEeCccCC
Confidence 11111 113468999999998833 3 588999999998864 25689999999 489999999974
Q ss_pred EEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEE
Q 021495 215 TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLR-LFNIDMIR 291 (311)
Q Consensus 215 ~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~ 291 (311)
+.... .+|- .+.....++|+|...+..+.. ...+++.+++ .+.++++|.++.++||+. +.++|+++
T Consensus 233 ~~~~~---~l~~---~ei~~~~~~~d~~~ky~~~~~-----~~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvD~~~ 301 (347)
T PRK14572 233 KRNPI---ALPA---TEIVPGGEFFDFESKYKQGGS-----EEITPARISDQEMKRVQELAIRAHESLGCKGYSRTDFII 301 (347)
T ss_pred CCCce---eccc---EEEecCCCccCHHHccCCCCe-----EEEECCCCCHHHHHHHHHHHHHHHHHhCCcceeEEEEEE
Confidence 21100 1111 011111245666554432111 0111222332 457999999999999998 44699999
Q ss_pred eCCCCCeEEEEEecCCCCC
Q 021495 292 EHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 292 ~~~tg~~~~ViDVNyfPG~ 310 (311)
++ | .+||+|||..|||
T Consensus 302 ~~--~-~~~vlEiNt~PG~ 317 (347)
T PRK14572 302 VD--G-EPHILETNTLPGM 317 (347)
T ss_pred EC--C-cEEEEeeeCCCCC
Confidence 73 3 5899999999997
No 16
>PRK05246 glutathione synthetase; Provisional
Probab=99.78 E-value=1.2e-17 Score=159.04 Aligned_cols=231 Identities=17% Similarity=0.238 Sum_probs=148.7
Q ss_pred EEEEEeCc---hhhhccchhHHHHHHHhCCCeEEEeeCCCCC---------------CC--C-------------CCccE
Q 021495 30 VVGYALTS---KKKKSFLQPKLEILARNKGISFVAIDQNRPL---------------SD--Q-------------GPFDV 76 (311)
Q Consensus 30 ~Vgy~~~~---kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl---------------~~--q-------------gp~Dv 76 (311)
.||+.|-| .|-+..-...|...|+++|++...+++..-. .. + ..+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~D~ 82 (316)
T PRK05246 3 KVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLADFDV 82 (316)
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCccccCCE
Confidence 45565542 2223333445889999999998887766311 00 0 13799
Q ss_pred EEEecCCh-----hHHHHHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcch
Q 021495 77 VLHKLSGM-----EWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPD 151 (311)
Q Consensus 77 iLhK~t~~-----~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~ 151 (311)
|+-|.... .+...+.+.++.. +++++|++++++.+.||..+++.+. ++|++.... +.+.+.+
T Consensus 83 v~~R~~~~~~~~~~~~~~~l~~le~~-g~~v~N~p~~l~~~~dK~~~~~l~~-----------~vP~T~~~~-~~~~~~~ 149 (316)
T PRK05246 83 ILMRKDPPFDMEYIYATYLLERAERP-GTLVVNKPQSLRDANEKLFTLWFPE-----------LMPPTLVTR-DKAEIRA 149 (316)
T ss_pred EEEcCCCCCChHHHHHHHHHHHHHhC-CCeEECCHHHHHhCccHHHHHhhhc-----------cCCCEEEeC-CHHHHHH
Confidence 99885332 1223344445443 8999999999999999998766421 589988764 3222323
Q ss_pred hhHhcCCCCcEEEeeCcCCCCCcceeeEEEcC-ccccc-------cC-CCCeEEEecccCC-CeEEEEEEECCEEEE-E-
Q 021495 152 QVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD-RFSLS-------EL-EPPMLLQEFVNHG-GILFKIYIIGETIKV-V- 219 (311)
Q Consensus 152 ~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~-~~~L~-------~l-~~P~vvQEfInH~-G~~~KVyVVGd~v~~-~- 219 (311)
.+...+ |+|+||+. |+ ++.++.++.. ...+. .. ..|+++|+||+.. +.++||+|+|+++.. +
T Consensus 150 ~~~~~~---~vVlKP~~--G~-~G~gV~~i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D~Rv~vv~g~vv~~a~ 223 (316)
T PRK05246 150 FRAEHG---DIILKPLD--GM-GGAGIFRVKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGDKRILLVDGEPVGYAL 223 (316)
T ss_pred HHHHCC---CEEEEECC--CC-CccceEEEeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCCEEEEEECCEEhhhee
Confidence 233333 99999999 55 5678888844 33322 22 4699999999864 679999999999886 5
Q ss_pred EEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHH---HHhCCcEeEEEEEEeCCCC
Q 021495 220 RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELR---HRLGLRLFNIDMIREHGMR 296 (311)
Q Consensus 220 ~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~---~~LGL~lfG~Dvi~~~~tg 296 (311)
.|.+.++ +|.+| ++. ++...+ .+.++...++|.++. +.+||.+.|||++ |
T Consensus 224 ~R~~~~~----~~rtN--------~~~------Gg~~~~----~~l~~~~~~ia~~~~~~l~~~gl~~~GVDli-----~ 276 (316)
T PRK05246 224 ARIPAGG----ETRGN--------LAA------GGRGEA----TPLTERDREICAAIGPELKERGLIFVGIDVI-----G 276 (316)
T ss_pred EecCCCC----CcccC--------ccC------CceEec----cCCCHHHHHHHHHHHHHHHHhCCCEEEEEEe-----C
Confidence 4544332 33332 121 222222 123455688888877 5779999999999 2
Q ss_pred CeEEEEEecCC-C
Q 021495 297 DVFYVIDINYF-P 308 (311)
Q Consensus 297 ~~~~ViDVNyf-P 308 (311)
+ ||+|||.+ |
T Consensus 277 ~--~l~EvN~~~p 287 (316)
T PRK05246 277 D--YLTEINVTSP 287 (316)
T ss_pred C--EEEEEeCCCc
Confidence 1 59999986 6
No 17
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=99.78 E-value=2.2e-17 Score=158.81 Aligned_cols=209 Identities=18% Similarity=0.190 Sum_probs=140.4
Q ss_pred CccEEEEecCChh-HHHHHHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcc
Q 021495 73 PFDVVLHKLSGME-WCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIP 150 (311)
Q Consensus 73 p~DviLhK~t~~~-~~~~l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~ 150 (311)
.+|+++--+.+.. --..+|.+++. -+++.+ .++.+...++||..|.+.++++ +|++|++..+..... .
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~-~gipy~G~~~~asai~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~-~- 159 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLEL-SGIPYVGCDIQSSALCMDKSLAYIVAKNA-------GIATPAFWTVTADER-P- 159 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHH-cCCCccCCCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEECCch-h-
Confidence 4687765444320 02346666654 678887 4578999999999999999875 899999998854321 1
Q ss_pred hhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCCeEEEEEEECCEE--EEEEE
Q 021495 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETI--KVVRR 221 (311)
Q Consensus 151 ~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G~~~KVyVVGd~v--~~~~R 221 (311)
....++||+|+||..++ | |.++.+|.|.++|.+ .+.++++||||. |+++.|.|+|+.- .+..
T Consensus 160 ---~~~~l~~P~iVKP~~~g-s--S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~sv~vl~~~~~~~~~~- 230 (343)
T PRK14568 160 ---DAATLTYPVFVKPARSG-S--SFGVSKVNSADELDYAIESARQYDSKVLIEEAVV--GSEVGCAVLGNGADLVVGE- 230 (343)
T ss_pred ---hhhhcCCCEEEEeCCCC-C--CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC--CEEEEEEEEcCCCCcceec-
Confidence 23468999999998843 3 578999999998864 366899999994 8999999998742 1110
Q ss_pred ecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCe
Q 021495 222 FSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLR-LFNIDMIREHGMRDV 298 (311)
Q Consensus 222 ~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~ 298 (311)
..++....++|+++............. .-.++.+++ .+.++++|.++.++||+. ++.+|++++. +| .
T Consensus 231 -------~~~i~~~~~~~~~~~k~~~~~g~~~~~-~~~Pa~l~~~~~~~i~~~a~~~~~~Lg~~G~~rvDf~l~~-~g-~ 300 (343)
T PRK14568 231 -------VDQIRLSHGFFRIHQENEPEKGSENST-IIVPADISAEERSRVQETAKAIYRALGCRGLARVDMFLQE-DG-T 300 (343)
T ss_pred -------ceEEecCCCccchhhhhccccCCCCee-EEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEeC-CC-C
Confidence 001111124555544322100000000 011234443 467999999999999995 5669999985 35 6
Q ss_pred EEEEEecCCCCC
Q 021495 299 FYVIDINYFPGR 310 (311)
Q Consensus 299 ~~ViDVNyfPG~ 310 (311)
+|++|||..|||
T Consensus 301 ~~llEINt~Pg~ 312 (343)
T PRK14568 301 VVLNEVNTLPGF 312 (343)
T ss_pred EEEEEeeCCCCC
Confidence 899999999997
No 18
>PRK12458 glutathione synthetase; Provisional
Probab=99.78 E-value=3.7e-17 Score=157.37 Aligned_cols=192 Identities=17% Similarity=0.243 Sum_probs=127.1
Q ss_pred CccEEEEecCCh---hHHHHHHH------HHHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEc
Q 021495 73 PFDVVLHKLSGM---EWCKIIED------YRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT 143 (311)
Q Consensus 73 p~DviLhK~t~~---~~~~~l~~------y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~ 143 (311)
.||+|++|-... .....+.. .+.+..+++++|++++++.+.||..+++ +.+ +.+|++++..
T Consensus 79 ~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~-l~~---------~~vP~T~v~~ 148 (338)
T PRK12458 79 GFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQS-FPE---------EVRPTTHISR 148 (338)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHh-hcc---------CCCCCEEEeC
Confidence 479999996432 22333331 2223468999999999999999998744 321 4689998774
Q ss_pred cCCCCcchhhHhcCCCC-cEEEeeCcCCCCCcceeeEEEcCccc--cccC------CCCeEEEecccC-CCeEEEEEEEC
Q 021495 144 KDSLSIPDQVFEAGLKL-PLVAKPLVVDGSAKSHELFLAYDRFS--LSEL------EPPMLLQEFVNH-GGILFKIYIIG 213 (311)
Q Consensus 144 ~~~~~~~~~l~~~~l~f-P~VvKP~~a~GS~~sh~m~lv~~~~~--L~~l------~~P~vvQEfInH-~G~~~KVyVVG 213 (311)
+.+.+.+.+ ...++ |+|+||+. |+ ++.++.++.+.+. +..+ ..++++||||+. .+.+++|+|+|
T Consensus 149 -~~~~~~~~~--~~~~~~pvVvKPl~--G~-gG~gV~~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~ 222 (338)
T PRK12458 149 -NKEYIREFL--EESPGDKMILKPLQ--GS-GGQGVFLIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLN 222 (338)
T ss_pred -CHHHHHHHH--HHcCCCeEEEEECC--CC-CccCeEEEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEEC
Confidence 222222222 23444 59999998 44 5688888876653 3221 458999999985 36799999999
Q ss_pred CEEE------EEEEe-cCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHh---CCc
Q 021495 214 ETIK------VVRRF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL---GLR 283 (311)
Q Consensus 214 d~v~------~~~R~-Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~L---GL~ 283 (311)
++++ .+.++ +-. ++|.+| .+ .++...+ ....+..+++|.++..+| ||.
T Consensus 223 g~~v~~~g~~~a~~R~~~~----~d~RsN--------~~------~Gg~~~~----~~l~~~~~~ia~~~~~~l~~~GL~ 280 (338)
T PRK12458 223 GEPLERDGHYAAMRRVPAG----GDVRSN--------VH------AGGSVVK----HTLTKEELELCEAIRPKLVRDGLF 280 (338)
T ss_pred CEEEeeccceeEEEEecCC----CCeeec--------cc------CCCcccC----cCCCHHHHHHHHHHHHHHhhcCCe
Confidence 9999 66544 322 233332 11 1222222 223566899999998888 999
Q ss_pred EeEEEEEEeCCCCCeEEEEEecC-CCC
Q 021495 284 LFNIDMIREHGMRDVFYVIDINY-FPG 309 (311)
Q Consensus 284 lfG~Dvi~~~~tg~~~~ViDVNy-fPG 309 (311)
+.|+|+| + + +|+|||. +||
T Consensus 281 ~~gVDli---~-~---~l~EIN~~sp~ 300 (338)
T PRK12458 281 FVGLDIV---G-D---KLVEVNVFSPG 300 (338)
T ss_pred EEeEEEE---C-C---EEEEEeCCCcc
Confidence 9999998 1 2 5899998 684
No 19
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=99.77 E-value=1.2e-18 Score=156.45 Aligned_cols=160 Identities=21% Similarity=0.306 Sum_probs=108.8
Q ss_pred CccccCcEEEEccCCCCcch-hhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCC
Q 021495 132 GKVRVPRQMVITKDSLSIPD-QVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHG 203 (311)
Q Consensus 132 ~~i~~P~~~~i~~~~~~~~~-~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~ 203 (311)
.||+||+++++......... ......++||+|+||.. .|| |.++.+|+|.++|.. ++.++++|||| +
T Consensus 5 ~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~-~Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI--~ 79 (203)
T PF07478_consen 5 AGIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPAS-EGS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI--S 79 (203)
T ss_dssp TT-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESS-TST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----S
T ss_pred cCCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECC-CCc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--c
Confidence 48999999999653221110 11346899999999997 455 677899999998864 46789999999 7
Q ss_pred CeEEEEEEECCE---EEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHH
Q 021495 204 GILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRH 278 (311)
Q Consensus 204 G~~~KVyVVGd~---v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~ 278 (311)
|++|.|.|+|+. +.-. .++....++|+|+..+.... ......+++.+++ .+.++++|.++.+
T Consensus 80 G~E~tv~vl~~~~~~~~~~----------~ei~~~~~~~d~~~Ky~~~~---~~~~~~~pa~l~~~~~~~i~~~a~~a~~ 146 (203)
T PF07478_consen 80 GREFTVGVLGNGEPRVLPP----------VEIVFPSEFYDYEAKYQPAD---SETEYIIPADLSEELQEKIKEIAKKAFK 146 (203)
T ss_dssp SEEEEEEEEESSSTEEEEE----------EEEEESSSEEEHHHHHSGCC---SCEEEESS-SS-HHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEecCCcccCce----------EEEEcCCCceehhheeccCC---CceEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 999999999944 3221 23333346788887764310 0111112233433 5789999999999
Q ss_pred HhCCcEeE-EEEEEeCCCCCeEEEEEecCCCCCC
Q 021495 279 RLGLRLFN-IDMIREHGMRDVFYVIDINYFPGRY 311 (311)
Q Consensus 279 ~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfPG~~ 311 (311)
+||+.-++ +|+.+++ +| ++|++|||..|||.
T Consensus 147 ~lg~~~~~RiD~rv~~-~g-~~~~lEiNt~PGlt 178 (203)
T PF07478_consen 147 ALGCRGYARIDFRVDE-DG-KPYFLEINTIPGLT 178 (203)
T ss_dssp HTTTCSEEEEEEEEET-TT-EEEEEEEESS-G-S
T ss_pred HHcCCCceeEEEEecc-CC-ceEEEeccCccccc
Confidence 99999888 9999985 45 79999999999973
No 20
>PRK14016 cyanophycin synthetase; Provisional
Probab=99.77 E-value=1.3e-17 Score=174.65 Aligned_cols=230 Identities=16% Similarity=0.214 Sum_probs=150.0
Q ss_pred HHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHHhcc
Q 021495 47 KLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLN 126 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~ 126 (311)
.+++.|.++|+.+..++-.. ++|=-++. ..+.++.. ..--++..+++.+.||..+.+.|++.
T Consensus 164 ~I~~~A~~~gi~~~~l~~~~----------~v~lgyG~-~~~~i~~~------~~~~~s~~a~~i~~DK~~tk~lL~~~- 225 (727)
T PRK14016 164 AIVDAAEARGIPYIRLGDGS----------LVQLGYGK-YQRRIQAA------ETDQTSAIAVDIACDKELTKRLLAAA- 225 (727)
T ss_pred HHHHHHHHcCCCEEEeCCCC----------eEecCCcH-HHHHHHHh------cCCCCcHHHHHHhCCHHHHHHHHHHC-
Confidence 58889999999998876422 12222331 12223221 12267889999999999999999875
Q ss_pred ccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEE-EcCcccccc-------CCCCeEEEe
Q 021495 127 LSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-AYDRFSLSE-------LEPPMLLQE 198 (311)
Q Consensus 127 ~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~l-v~~~~~L~~-------l~~P~vvQE 198 (311)
+|++|++..+.+ .+...+ ....++||+|+||.. |+ ++.+|.+ +.++++|.+ ...++++||
T Consensus 226 ------GIPvP~~~~v~s-~~~a~~--~a~~iG~PvVVKP~~--G~-~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe 293 (727)
T PRK14016 226 ------GVPVPEGRVVTS-AEDAWE--AAEEIGYPVVVKPLD--GN-HGRGVTVNITTREEIEAAYAVASKESSDVIVER 293 (727)
T ss_pred ------CcCCCCeeEeCC-HHHHHH--HHHHcCCCEEEEECC--CC-CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 899999987753 222222 234689999999987 55 5788998 899988754 256899999
Q ss_pred cccCCCeEEEEEEECCEEEEEEEecCCCCcccccc--------ccc----e-----------------------eeeecc
Q 021495 199 FVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELA--------KVV----S-----------------------VFRFPR 243 (311)
Q Consensus 199 fInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~--------~~~----~-----------------------~~~~~~ 243 (311)
||+ |++|+|+|+|+++.++.|+-.+.+--+... .|. | -+..++
T Consensus 294 ~I~--G~d~Rv~Vvgg~vvaa~~r~~~~v~GDG~~ti~~Li~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~~s 371 (727)
T PRK14016 294 YIP--GKDHRLLVVGGKLVAAARREPPHVIGDGKHTIRELIEIVNQDPRRGEGHEKPLTKIKLDDIALLELAKQGYTLDS 371 (727)
T ss_pred ecC--CceEEEEEECCEEEEEEEecCcEEecCCcccHHHHHHHhhcCccccccccCcccccCCCHHHHHHHHHcCCCccc
Confidence 995 999999999999999877755543111000 000 0 011111
Q ss_pred cccc---------cccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCC----CCeEEEEEecCCCCC
Q 021495 244 VSSA---------AASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGM----RDVFYVIDINYFPGR 310 (311)
Q Consensus 244 vs~~---------~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~t----g~~~~ViDVNyfPG~ 310 (311)
+-.. ++.+.++....+... ..+...++|.++.+++||.++|+|++.++-+ ...+.|||||.-||+
T Consensus 372 V~~~G~~v~l~~~~N~s~Gg~~~d~td~--i~~~~~~~a~~aa~~~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi 449 (727)
T PRK14016 372 VPPKGEKVYLRRNANLSTGGTAIDVTDE--VHPENAAIAERAAKIIGLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGL 449 (727)
T ss_pred cCCCCCEEEEeccccccCCCeeEecccc--cCHHHHHHHHHHHHhcCCCEEEEEEEecCcccccccCCcEEEEEcCCcch
Confidence 1100 011111111111111 2456899999999999999999999996410 113689999999997
No 21
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=99.77 E-value=2.1e-17 Score=173.33 Aligned_cols=232 Identities=15% Similarity=0.171 Sum_probs=150.6
Q ss_pred hHHHHHHHhCCCeEEEeeCCCCCCC---CCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHH
Q 021495 46 PKLEILARNKGISFVAIDQNRPLSD---QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDV 122 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~---qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l 122 (311)
..+++.|.++|+.+..+|.+..+-. .+..+.+.. -.....|+..+...+.||..|.+.|
T Consensus 435 ~~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~------------------~~~t~~~s~~s~~~~~DK~~tk~lL 496 (752)
T PRK02471 435 QILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKN------------------GNMTSKDNYISPLIMENKVVTKKIL 496 (752)
T ss_pred HHHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEe------------------ccccCCCHHHHHHHhhCHHHHHHHH
Confidence 3588999999999999998654332 112232211 1356688888999999999999999
Q ss_pred HhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcC---cccccc-------CCC
Q 021495 123 ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD---RFSLSE-------LEP 192 (311)
Q Consensus 123 ~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~---~~~L~~-------l~~ 192 (311)
++. +|++|++.++.+ .+..... ...-++||+|+||.. |+ +|.+++++.+ .+++.+ .+.
T Consensus 497 ~~~-------GIpvP~~~~~~~-~e~a~~~-~~~~~g~PvVVKP~~--g~-~G~GV~~~~~~~~~eel~~A~~~a~~~~~ 564 (752)
T PRK02471 497 AEA-------GFPVPAGDEFTS-LEEALAD-YSLFADKAIVVKPKS--TN-FGLGISIFKEPASLEDYEKALEIAFREDS 564 (752)
T ss_pred HHC-------CcCCCCEEEEcC-HHHHHHH-HHHhcCCCEEEEECC--CC-CcCCeEEecCcCCHHHHHHHHHHHHhcCC
Confidence 874 899999998853 2212121 122248999999998 44 4688888654 444432 256
Q ss_pred CeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccc--------cccee--------------------------
Q 021495 193 PMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELA--------KVVSV-------------------------- 238 (311)
Q Consensus 193 P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~--------~~~~~-------------------------- 238 (311)
.+++|||| .|++|+|+|||+++..+.++..+++.-+... .|..+
T Consensus 565 ~vlVEEfI--~G~E~Rv~Viggkvvaa~~R~pa~V~GDG~~tI~eLi~~~n~~p~Rg~~~~~~l~~I~~d~~~~~~L~~q 642 (752)
T PRK02471 565 SVLVEEFI--VGTEYRFFVLDGKVEAVLLRVPANVVGDGIHTVRELVAQKNQDPLRGTDHRTPLEKIQLGEIERLMLKQQ 642 (752)
T ss_pred cEEEEecc--cCCEEEEEEECCEEEEEEEEeCCccccCcHhhHHHHHHHhcCCccccCcccccccccccCHHHHHHHHHc
Confidence 79999999 5999999999999998765544555322111 11100
Q ss_pred -eeeccccccc---------ccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCC------CCCeEEEE
Q 021495 239 -FRFPRVSSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHG------MRDVFYVI 302 (311)
Q Consensus 239 -~~~~~vs~~~---------~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~------tg~~~~Vi 302 (311)
+.+++|-..+ +.+.+++... .+. ...+...++|.++.+++||.++|+|+|.++- ....+.||
T Consensus 643 g~~l~sVp~~Ge~v~L~~~~NlstGg~~~d-vtd-~ih~~~~~lA~~aa~~igl~~~GvDii~~di~~p~~~~~~~~~Ii 720 (752)
T PRK02471 643 GLTPDSIPKKGEIVYLRENSNISTGGDSID-MTD-DMDDSYKQIAVKAAKALGAKICGVDLIIPDLTQPASPEHPNYGII 720 (752)
T ss_pred CCCccccCCCCCEEEecCCCccCCCCeeEe-ccc-ccCHHHHHHHHHHHHhcCCCEEEEEEEeCCCcccccccCCCeEEE
Confidence 1112211110 0011111100 011 1256689999999999999999999999752 11147999
Q ss_pred EecCCCCCC
Q 021495 303 DINYFPGRY 311 (311)
Q Consensus 303 DVNyfPG~~ 311 (311)
|||.-||+.
T Consensus 721 EvN~~P~l~ 729 (752)
T PRK02471 721 ELNFNPAMY 729 (752)
T ss_pred EecCCCchh
Confidence 999999973
No 22
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=99.76 E-value=7.7e-18 Score=163.56 Aligned_cols=212 Identities=17% Similarity=0.221 Sum_probs=144.6
Q ss_pred CccEEEEecCC---hhHHHHHHHHHHhCCCeeeeCch-hHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCC--
Q 021495 73 PFDVVLHKLSG---MEWCKIIEDYRQKHPEVTILDPP-DAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS-- 146 (311)
Q Consensus 73 p~DviLhK~t~---~~~~~~l~~y~~~hP~v~ViDp~-~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~-- 146 (311)
.+|+++-=+.+ ++ ..+|.+++. -+++.+.+- .+...++||..+-+.++++ +|+||++..+....
T Consensus 87 ~~D~vf~~lhG~~GEd--g~iqglle~-~giPy~Gs~~~asal~~DK~~tK~~l~~~-------GIpt~p~~~~~~~~~~ 156 (364)
T PRK14570 87 EIDVVFPIVHGRTGED--GAIQGFLKV-MDIPCVGAGILGSAISINKYFCKLLLKSF-------NIPLVPFIGFRKYDYF 156 (364)
T ss_pred CCCEEEEcCCCCCCCc--CHHHHHHHH-cCCCccCCCHHHHHHHHCHHHHHHHHHHc-------CCCCCCEEEEeccccc
Confidence 58988655543 32 346666654 689999988 5999999999999999875 89999988874321
Q ss_pred ---CCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------CCCCeEEEecccCCCeEEEEEEECCEE
Q 021495 147 ---LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETI 216 (311)
Q Consensus 147 ---~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G~~~KVyVVGd~v 216 (311)
++..+ .....++||+|+||..+ || |.++.+|.|+++|.. .+.++++||||. |+++.|.|+|+..
T Consensus 157 ~~~~~~~~-~~~~~lg~PviVKP~~~-Gs--S~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~--GrEi~v~Vlg~~~ 230 (364)
T PRK14570 157 LDKEGIKK-DIKEVLGYPVIVKPAVL-GS--SIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE--AREIECSVIGNEQ 230 (364)
T ss_pred cchHHHHH-HHHHhcCCCEEEEeCCC-CC--CCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC--CEEEEEEEECCCC
Confidence 11111 12356899999999873 44 578999999988765 356899999995 9999999999853
Q ss_pred EEEEEecCCCCccccccc-cceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCcEe-EEEEEEe
Q 021495 217 KVVRRFSLPNVSKRELAK-VVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLRLF-NIDMIRE 292 (311)
Q Consensus 217 ~~~~R~Slpn~~~~~~~~-~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~lf-G~Dvi~~ 292 (311)
..+ +|. .++.. ...+|+|...+..... .+....+++.+++ .+.++++|.++.++||+.-+ .+|++++
T Consensus 231 ~~v----~~~---~Ei~~~~~~f~dy~~Ky~~~~~--~~~~~~~Pa~l~~e~~~~i~~~A~~~~~aLg~~G~~RvDf~l~ 301 (364)
T PRK14570 231 IKI----FTP---GEIVVQDFIFYDYDAKYSTIPG--NSIVFNIPAHLDTKHLLDIKEYAFLTYKNLELRGMARIDFLIE 301 (364)
T ss_pred ceE----eee---EEEEeCCCCccCHHHhcCCCCC--CceEEECCCCCCHHHHHHHHHHHHHHHHHhCCcceEEEEEEEE
Confidence 111 121 12211 1245666654421000 0000012233443 46799999999999999755 5999998
Q ss_pred CCCCCeEEEEEecCCCCC
Q 021495 293 HGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 293 ~~tg~~~~ViDVNyfPG~ 310 (311)
.+.| ++||+|||..|||
T Consensus 302 ~~~g-~~yvlEiNt~PG~ 318 (364)
T PRK14570 302 KDTG-LIYLNEINTIPGF 318 (364)
T ss_pred CCCC-cEEEEEeeCCCCC
Confidence 5334 6899999999997
No 23
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=99.71 E-value=1.6e-16 Score=169.34 Aligned_cols=229 Identities=16% Similarity=0.194 Sum_probs=146.1
Q ss_pred HHHHHHHhCCCeEEEeeCCCCCCC--CCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHHh
Q 021495 47 KLEILARNKGISFVAIDQNRPLSD--QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVAD 124 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~--qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~ 124 (311)
.+++.|.++||.+..+|-+ .+-. +|..--.+.- ...=.|+..+++.+.||..+.+.|++
T Consensus 163 ~i~~~a~~rgip~~~l~~~-~~~qlg~g~~~~~~~~------------------~~t~~~s~ia~~ia~DK~~tk~lL~~ 223 (864)
T TIGR02068 163 AIVDEAEKRGIPYMRLSAG-SLVQLGYGSRQKRIQA------------------TETDRTSAIAVEIACDKDLTKEILSD 223 (864)
T ss_pred HHHHHHHHCCCCEEEECCC-CEEEecCCCEEEEEEe------------------ecCCCCcHHHHHHHcCHHHHHHHHHH
Confidence 4778888889988888642 2211 1211111110 12234678899999999999999988
Q ss_pred ccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEE-EcCcccccc-------CCCCeEE
Q 021495 125 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL-AYDRFSLSE-------LEPPMLL 196 (311)
Q Consensus 125 l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~l-v~~~~~L~~-------l~~P~vv 196 (311)
. +|++|++..+.+. +...+ ....++||+|+||.. |+ .+.++.+ +.++++|.+ ...++++
T Consensus 224 ~-------GIpvP~~~~~~s~-~ea~~--~~~~ig~PvVVKP~~--g~-~G~GV~l~v~s~~el~~a~~~a~~~~~~vlV 290 (864)
T TIGR02068 224 A-------GVPVPEGTVVQSA-EDAWE--AAQDLGYPVVIKPYD--GN-HGRGVTINILTRDEIESAYEAAVEESSGVIV 290 (864)
T ss_pred c-------CcCCCCEEEECCH-HHHHH--HHHHcCCCEEEEECC--CC-CccCEEEEeCCHHHHHHHHHHHHhhCCcEEE
Confidence 5 8999999888532 22222 234678999999997 44 4688998 899988754 2468999
Q ss_pred EecccCCCeEEEEEEECCEEEEEEEecCCCCcccc------cc--cccee---------------------------eee
Q 021495 197 QEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRE------LA--KVVSV---------------------------FRF 241 (311)
Q Consensus 197 QEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~------~~--~~~~~---------------------------~~~ 241 (311)
|+|| .|++|+|+|+|+++.++.++-.|++.-+. +. .|..+ ++.
T Consensus 291 EefI--~G~e~rvlVv~~~vvaa~~R~p~~V~GdG~~ti~eLi~~~n~~p~rg~~~~~~l~~i~~d~~~~~~l~~~g~~~ 368 (864)
T TIGR02068 291 ERFI--TGRDHRLLVVGGKVVAVAERVPAHVIGDGVHTIEELIEQINTDPLRGDGHDKPLTKIRLDSTARLELAKQGLTL 368 (864)
T ss_pred EEec--cCCEEEEEEECCEEEEEEEecCCceecCccccHHHHHHHhccCcccCccccCCccccCCCHHHHHHHHHcCCCc
Confidence 9999 48999999999999987666445432110 00 00000 111
Q ss_pred ccccccc---------ccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCC----CCeEEEEEecCCC
Q 021495 242 PRVSSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGM----RDVFYVIDINYFP 308 (311)
Q Consensus 242 ~~vs~~~---------~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~t----g~~~~ViDVNyfP 308 (311)
+++-..+ +.+.++.......+ ..+...++|.++.+++||++.|+|++.++-+ +..+.|||||.-|
T Consensus 369 ~sV~~~g~~v~l~~~~Nls~Gg~~~d~td~--i~~~~~~~a~~aa~~~gl~i~gvD~i~~di~~~~~~~~~~iiEvN~~p 446 (864)
T TIGR02068 369 DSVPAKGRIVYLRATANLSTGGVAIDRTDE--IHPENAATAVRAAKIIGLDIAGVDIVTEDISRPLRDTDGAIVEVNAAP 446 (864)
T ss_pred cccCCCCCEEEEeccccccCCCceEecccc--cCHHHHHHHHHHHHHhCCCeEEEEEEecCCCCCccccCcEEEEEcCCc
Confidence 1111100 01111111110011 2456899999999999999999999986411 1136899999999
Q ss_pred CCC
Q 021495 309 GRY 311 (311)
Q Consensus 309 G~~ 311 (311)
|+.
T Consensus 447 ~~~ 449 (864)
T TIGR02068 447 GLR 449 (864)
T ss_pred chh
Confidence 973
No 24
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=99.71 E-value=5.9e-16 Score=147.38 Aligned_cols=193 Identities=15% Similarity=0.123 Sum_probs=122.9
Q ss_pred eCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCC-cEEEeeCcCCCCCcceeeEEE
Q 021495 103 LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLVVDGSAKSHELFLA 181 (311)
Q Consensus 103 iDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~f-P~VvKP~~a~GS~~sh~m~lv 181 (311)
.|+.+..-.|.||+.+.+.|++. +|++|.+.++.+...+. +.+...--++ |+|+||+. || ++.++.++
T Consensus 26 ~N~r~~~~~~~DK~~t~~lL~~a-------glpvP~T~~~~s~~~~~-~~l~~~~~~~~~VVVKPl~--Gs-~GrGI~~i 94 (317)
T TIGR02291 26 YNKRSLYPLVDDKLKTKIIAQAA-------GITVPELYGVIHNQAEV-KTIHNIVKDHPDFVIKPAQ--GS-GGKGILVI 94 (317)
T ss_pred cCCchhccccccHHHHHHHHHHc-------CCCCCCEEEecCchhhH-HHHHHHHccCCCEEEEECC--CC-CccCeEEE
Confidence 46678888899999999998874 89999999886443222 2222222245 69999998 77 78999999
Q ss_pred cCccccc--------------------------cCCCC--eEEEecccCC-----------CeEEEEEEECCEEEEE-EE
Q 021495 182 YDRFSLS--------------------------ELEPP--MLLQEFVNHG-----------GILFKIYIIGETIKVV-RR 221 (311)
Q Consensus 182 ~~~~~L~--------------------------~l~~P--~vvQEfInH~-----------G~~~KVyVVGd~v~~~-~R 221 (311)
.+.++.. .+..+ .++|||+.++ ..++||+|+|+++.++ .|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~~R 174 (317)
T TIGR02291 95 TSRKDGRYRKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAMMR 174 (317)
T ss_pred EeccccccccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEEEE
Confidence 7754321 12222 5667776332 3799999999999875 45
Q ss_pred ecCC--CCcccccccccee---eeecc--cccccccCCCCCCCCC------CCCCCChHHHHHHHHHHHHHhCCcEeEEE
Q 021495 222 FSLP--NVSKRELAKVVSV---FRFPR--VSSAAASADDADLDPG------IAELPPRPLLERLARELRHRLGLRLFNID 288 (311)
Q Consensus 222 ~Slp--n~~~~~~~~~~~~---~~~~~--vs~~~~~a~~~~~~p~------~~~~p~~~~~~~lA~~l~~~LGL~lfG~D 288 (311)
.+.. +|.+|- .. .|. .+-.+ +...+.....-...|. --.+|..+++.++|.++.+++|+.++|+|
T Consensus 175 ~~~~~~~~~tN~-~~-Gg~~~~vdl~tG~l~~~~~~~~~~~~HP~t~~~~~g~~ip~~~el~~la~~A~~~~g~~~~GvD 252 (317)
T TIGR02291 175 LPTRASDGKANL-HQ-GAVGVGIDLATGKTIRAVWFNQPITHHPDTGKDLSGLQVPHWERLLELAASCWELTGLGYMGVD 252 (317)
T ss_pred ccCccCCccccc-cc-CCceeeeecCCCccccccccCCccccCCCcccccccCCChhHHHHHHHHHHHHHhcCCCeEEEE
Confidence 4432 444431 10 111 11000 0000000000001111 12345567899999999999999999999
Q ss_pred EEEeCCCCCeEEEEEecCCCCC
Q 021495 289 MIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 289 vi~~~~tg~~~~ViDVNyfPG~ 310 (311)
++++.+. .++|+|||..|||
T Consensus 253 ii~~~~~--g~~VlEVN~~Pg~ 272 (317)
T TIGR02291 253 MVLDKEE--GPLVLELNARPGL 272 (317)
T ss_pred EEEeCCC--CEEEEEeCCCCCC
Confidence 9997533 4899999999997
No 25
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=99.67 E-value=2.8e-15 Score=159.08 Aligned_cols=240 Identities=15% Similarity=0.116 Sum_probs=159.5
Q ss_pred HHHHHHhCCCeEEEeeCCCCC----C---------------------C-CCCccEEEEecC---ChhHHHHHHHHHHhCC
Q 021495 48 LEILARNKGISFVAIDQNRPL----S---------------------D-QGPFDVVLHKLS---GMEWCKIIEDYRQKHP 98 (311)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl----~---------------------~-qgp~DviLhK~t---~~~~~~~l~~y~~~hP 98 (311)
..+..++.|.+.++||.++.= . . ...+|+++-=+. +++ ..+|.+++. -
T Consensus 475 v~~al~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~lhG~~ged--g~iq~~le~-~ 551 (809)
T PRK14573 475 IAKYLSPEFYDVSYFLINRQGLWETVSSLETAIEEDSGKSVLSSEIAQALAKVDVVLPILHGPFGED--GTMQGFLEI-I 551 (809)
T ss_pred HHHhhcccCcEEEEEEECCCCeEEecccccccccccccccccchhhhhccccCCEEEEcCCCCCCCC--hHHHHHHHH-c
Confidence 455567779999988877620 0 0 023677654443 332 346666655 4
Q ss_pred CeeeeC-chhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCC--CCcch--hhHhcCCCCcEEEeeCcCCCCC
Q 021495 99 EVTILD-PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDS--LSIPD--QVFEAGLKLPLVAKPLVVDGSA 173 (311)
Q Consensus 99 ~v~ViD-p~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~--~~~~~--~l~~~~l~fP~VvKP~~a~GS~ 173 (311)
+++.+- ++.+...++||..+-+.+++. +|++|++..+.... ..... .-....++||+|+||..+ ||
T Consensus 552 gipy~Gs~~~asal~~DK~~~K~~l~~~-------GIpt~~~~~~~~~~~~~~~~~~~~~~~~~lg~P~iVKP~~~-Gs- 622 (809)
T PRK14573 552 GKPYTGPSLAFSAIAMDKVLTKRFASDV-------GVPVVPYQPLTLAGWKREPELCLAHIVEAFSFPMFVKTAHL-GS- 622 (809)
T ss_pred CCCeeCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhcccChHHHHHHHHHhcCCCEEEeeCCC-CC-
Confidence 577654 678889999999999998874 89999999885311 01101 012357999999999984 44
Q ss_pred cceeeEEEcCcccccc-------CCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeeccccc
Q 021495 174 KSHELFLAYDRFSLSE-------LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSS 246 (311)
Q Consensus 174 ~sh~m~lv~~~~~L~~-------l~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~ 246 (311)
|.++.+|.|+++|.+ .+.++++||||. +|+++.|.|+|+.-.... .+.+ .+.....++|+|...+.
T Consensus 623 -S~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~vl~~~~~~~~-~~~~----~e~~~~~~f~dy~~Ky~ 695 (809)
T PRK14573 623 -SIGVFEVHNVEELRDKISEAFLYDTDVFVEESRL-GSREIEVSCLGDGSSAYV-IAGP----HERRGSGGFIDYQEKYG 695 (809)
T ss_pred -CCCEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEEEeCCCCceE-eccc----eEEccCCCeeCchhccc
Confidence 578999999998864 357899999985 589999999998631100 1111 12222235777776553
Q ss_pred ccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCCC
Q 021495 247 AAASADDADLDPGIAELPP--RPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 247 ~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
..... .... ..++.+++ .++++++|.++.++||+.-++ +|++++.+ | .+|++|||..|||
T Consensus 696 ~~g~~-~~~~-~~Pa~l~~~~~~~i~~~a~~~~~aLg~~G~~riDf~v~~~-g-~~yv~EiNt~PG~ 758 (809)
T PRK14573 696 LSGKS-SAQI-VFDLDLSKESQEQVLELAERIYRLLQGKGSCRIDFFLDEE-G-NFWLSEMNPIPGM 758 (809)
T ss_pred CCCCC-ceEE-ecCCCCCHHHHHHHHHHHHHHHHHhCCceEEEEEEEEcCC-C-CEEEEEeeCCCCC
Confidence 11000 0000 11233443 578999999999999999886 99999853 4 6899999999997
No 26
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=3.9e-14 Score=135.30 Aligned_cols=242 Identities=19% Similarity=0.171 Sum_probs=168.5
Q ss_pred hHHHHHHHhCCCeEEEeeCCCCCC---CC-------CCccEEEEecCChh-HHHHHHHHHHhCCCeeeeCchhHHHHhcC
Q 021495 46 PKLEILARNKGISFVAIDQNRPLS---DQ-------GPFDVVLHKLSGME-WCKIIEDYRQKHPEVTILDPPDAIKHLHN 114 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~---~q-------gp~DviLhK~t~~~-~~~~l~~y~~~hP~v~ViDp~~ai~~l~d 114 (311)
..+.++.+..|.+...+|.+.... .+ ..+|++.-.+.+.. --..+|.|++..-==.|.-|..+-...+|
T Consensus 24 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~md 103 (317)
T COG1181 24 KAVLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMD 103 (317)
T ss_pred HHHHHHHhhcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhccc
Confidence 345666677899999999887433 12 46777654444320 01235555554332456788899999999
Q ss_pred HHHHHHHHHhccccCCCCccccCcEEEEccCC-CCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc----
Q 021495 115 RQSMLQDVADLNLSDCNGKVRVPRQMVITKDS-LSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE---- 189 (311)
Q Consensus 115 R~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~-~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~---- 189 (311)
+..+=+.+... +++++.++.+..+. ..........+++||++|||.. -|| |-++..+.+.+++..
T Consensus 104 k~~~K~~~~~~-------g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~-~gS--Svg~~~v~~~~d~~~~~e~ 173 (317)
T COG1181 104 KIVTKRLFKAE-------GLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPAR-EGS--SVGRSPVNVEGDLQSALEL 173 (317)
T ss_pred HHHHHHHHHHC-------CCCccceeeeecccchhHHHHHhhcccCCCEEEEcCC-ccc--eeeEEEeeeccchHHHHHH
Confidence 99876666553 88999898886432 2222223567999999999987 466 688999999988764
Q ss_pred ---CCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccc-ceeeeecccccccccCCCCCCCCCCCCCCC
Q 021495 190 ---LEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKV-VSVFRFPRVSSAAASADDADLDPGIAELPP 265 (311)
Q Consensus 190 ---l~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~-~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~ 265 (311)
.+...++|+|++ |+.+.|-++|+.. ... .++ .+++... ..+|+|...+..+.. +.. .+++.+++
T Consensus 174 a~~~d~~vl~e~~~~--~rei~v~vl~~~~-~~~--~l~---~~eI~~~~~~fydye~Ky~~~gg---~~~-~~pa~lt~ 241 (317)
T COG1181 174 AFKYDRDVLREQGIT--GREIEVGVLGNDY-EEQ--ALP---LGEIPPKGEEFYDYEAKYLSTGG---AQY-DIPAGLTD 241 (317)
T ss_pred HHHhCCceeeccCCC--cceEEEEecCCcc-cce--ecC---ceEEecCCCeEEeeeccccCCCC---cee-eCCCCCCH
Confidence 377899999997 9999999999966 111 122 1233322 578998887654211 111 12233443
Q ss_pred --hHHHHHHHHHHHHHhC-CcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 266 --RPLLERLARELRHRLG-LRLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 266 --~~~~~~lA~~l~~~LG-L~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
.+.++++|.++.++|| +.+.++|++.+..+| ++|++|||..|||
T Consensus 242 ~~~~~i~~lA~~a~~alg~~g~~rvDf~~~~~~g-~~~l~EvNt~PG~ 288 (317)
T COG1181 242 EIHEEIKELALRAYKALGCLGLARVDFFVDDDEG-EFVLLEVNTNPGM 288 (317)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEEEECCCC-CEEEEEEeCCCCC
Confidence 5789999999999999 888899999997455 6999999999997
No 27
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=99.62 E-value=3.5e-14 Score=147.93 Aligned_cols=237 Identities=14% Similarity=0.194 Sum_probs=148.1
Q ss_pred ccchhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHH
Q 021495 42 SFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQD 121 (311)
Q Consensus 42 ~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~ 121 (311)
.+..+.|+..|.++| .+.-+|-...+- ++.--. -++|+. .-...-.|+..++..+.||..|-+.
T Consensus 419 ~~stQ~Li~~Ai~rG-~v~vlD~~~~~~----------~L~~g~----~~~~v~-~~s~ts~tS~ia~~i~~DK~~TK~i 482 (737)
T TIGR01435 419 ELSTQWKLFDVIQKG-KVEILDEAEQFL----------RLQKGD----HIEYVK-NANMTSKDNYVSPLIMENKVVTKKV 482 (737)
T ss_pred cHhHHHHHHHHHHCC-CEEEeCCCCCee----------EeecCC----cceEEe-cceecCCccHHHHHHhcCHHHHHHH
Confidence 344556888889999 776666654322 121100 111221 1245667889999999999999999
Q ss_pred HHhccccCCCCccccCcEEEEccCCCCcchhhHhcCC-CCcEEEeeCcCCCCCcceeeEEEcC---cccccc-------C
Q 021495 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGL-KLPLVAKPLVVDGSAKSHELFLAYD---RFSLSE-------L 190 (311)
Q Consensus 122 l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l-~fP~VvKP~~a~GS~~sh~m~lv~~---~~~L~~-------l 190 (311)
|++. +|++|.+.++.+..+. .+ ....+ +||+||||.. |+ .|.+++++.+ .+++.+ .
T Consensus 483 L~~a-------GIPVP~g~~~~~~~~a-~~--~~~~~~g~PVVVKP~~--g~-~G~GVsi~~~~~~~eel~~Al~~A~~~ 549 (737)
T TIGR01435 483 LAEA-------GFRVPFGDEFSSQALA-LE--AFSLFENKAIVVKPKS--TN-YGLGITIFKNGFTLEDFQEALNIAFSE 549 (737)
T ss_pred HHHc-------CcCCCCEEEECCHHHH-HH--HHHHhcCCCEEEeeCC--CC-CcCCeEEecCcCCHHHHHHHHHHHHhc
Confidence 9874 8999999988532211 11 12233 6999999998 44 3678888877 344432 2
Q ss_pred CCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccc--------cccee------------------------
Q 021495 191 EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELA--------KVVSV------------------------ 238 (311)
Q Consensus 191 ~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~--------~~~~~------------------------ 238 (311)
+..+++|||| .|++|+|+|||+++.++.++-.+++--+... .|..+
T Consensus 550 ~~~VLVEefI--~G~EyRv~VIg~kvvaa~~R~Pa~ViGDG~~TI~eLI~~kN~~p~Rg~~~~~pl~~I~~d~~~~~L~~ 627 (737)
T TIGR01435 550 DSSVIIEEFL--PGTEYRFFVLNDKVEAVLLRVPANVTGDGIHTVRELVAEKNTDPLRGTDHRKPLEKITGPEETLMLKE 627 (737)
T ss_pred CCeEEEEecc--cCCEEEEEEECCeEEEEEEECCCCEEECCHHHHHHHHHHhccCcccCCcccCCcccccchHHHHHHHH
Confidence 4579999999 5999999999999998766655655321111 11100
Q ss_pred --eeeccccccc---------ccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCC------CeEEE
Q 021495 239 --FRFPRVSSAA---------ASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMR------DVFYV 301 (311)
Q Consensus 239 --~~~~~vs~~~---------~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg------~~~~V 301 (311)
+.+++|-..+ +.+.+++... .+. ...+...++|.++.+++|+.+.|||+|+++-+. ..+.|
T Consensus 628 qg~tldsVp~~Ge~V~Lr~~aNlstGG~~iD-vTd-~ihp~~~~lA~~aa~algl~i~GVDii~~di~~p~~~~~~~~~i 705 (737)
T TIGR01435 628 QGLTIDSIPKKEQIVYLRENSNVSTGGDSID-MTD-EMDDSYKQIAIRIATAVGAAICGVDLIIPDETIPDTDKHAIWGV 705 (737)
T ss_pred cCCCccccCCCCCEEEEcCCCcccCCCceEe-ccc-ccCHHHHHHHHHHHHhcCCCEEEEEEEecCCCCCccccccceEE
Confidence 0111111100 0011111100 010 124568999999999999999999999874221 13789
Q ss_pred EEecCCCCCC
Q 021495 302 IDINYFPGRY 311 (311)
Q Consensus 302 iDVNyfPG~~ 311 (311)
||||.-||++
T Consensus 706 iEvN~~P~l~ 715 (737)
T TIGR01435 706 IEANFNPAMH 715 (737)
T ss_pred EEEcCCcchh
Confidence 9999999984
No 28
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.61 E-value=4.5e-14 Score=136.77 Aligned_cols=222 Identities=14% Similarity=0.210 Sum_probs=140.0
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCCCC-----------------------CCCccEEEEecCChhHHHHHHHHHHhCCCee
Q 021495 45 QPKLEILARNKGISFVAIDQNRPLSD-----------------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVT 101 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~~-----------------------qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ 101 (311)
...++..|+++|+.++.+|.+..-.. +..+|+|+-=..+ .....+.. +++ -+++
T Consensus 11 ~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~-v~~~~~~~-l~~-~g~~ 87 (380)
T TIGR01142 11 GKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPEIEA-IATDALFE-LEK-EGYF 87 (380)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEeccCc-cCHHHHHH-HHh-cCCe
Confidence 34567788899999998888642111 0123444321111 01122322 222 3577
Q ss_pred eeCchhHHHHhcCHHHHHHHH-HhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEE
Q 021495 102 ILDPPDAIKHLHNRQSMLQDV-ADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (311)
Q Consensus 102 ViDp~~ai~~l~dR~~~l~~l-~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~l 180 (311)
+..++++++.+.||..+.+.+ .++ +|++|++..+.+. +++.+ ....++||+|+||.. |+ +|.++.+
T Consensus 88 ~~~~~~~~~~~~dK~~~~~~~~~~~-------gip~p~~~~~~~~-~~~~~--~~~~~g~P~VvKP~~--g~-~s~gv~~ 154 (380)
T TIGR01142 88 VVPNARATKLTMNREGIRRLAAEEL-------GLPTSRYMFADSL-DELRE--AVEKIGYPCVVKPVM--SS-SGKGQSV 154 (380)
T ss_pred eCCCHHHHHHhhCHHHHHHHHHHHC-------CCCCCCceEeCCH-HHHHH--HHHHcCCCEEEEECC--Cc-CCCCeEE
Confidence 778899999999999887764 554 8999999988532 22212 234789999999987 44 4678999
Q ss_pred EcCccccccC-----------CCCeEEEecccCCCeEEEEEEE---CCEEEEEEEecCCCCccccccccceeeeeccccc
Q 021495 181 AYDRFSLSEL-----------EPPMLLQEFVNHGGILFKIYII---GETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSS 246 (311)
Q Consensus 181 v~~~~~L~~l-----------~~P~vvQEfInH~G~~~KVyVV---Gd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~ 246 (311)
+.++++|... ..++++||||+ +++++.|.++ ++++... ....++. ..+.+.
T Consensus 155 v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~-~~~E~sv~~~~~~~g~~~~~--~~~~~~~------~~~~~~------ 219 (380)
T TIGR01142 155 VRGPEDIEKAWEYAQEGARGGAGRVIVEEFID-FDYEITLLTVRHVDGNTTFC--APIGHRQ------IDGDYH------ 219 (380)
T ss_pred ECCHHHHHHHHHHHHhhccCCCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcceEE------eCCeeE------
Confidence 9999887542 35799999997 4689998887 2332221 1111100 001110
Q ss_pred ccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCC-cEeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 247 AAASADDADLDPGIAELPP--RPLLERLARELRHRLGL-RLFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 247 ~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL-~lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
. ...| +.+++ .+.++++|+++.++||. .++++|++.+++ .+||+|||.-||
T Consensus 220 ~-------~~~p--~~l~~~~~~~i~~~a~~~~~~l~~~G~~~ie~~~~~~---~~~viEinpR~~ 273 (380)
T TIGR01142 220 E-------SWQP--QEMSEKALEEAQRIAKRITDALGGYGLFGVELFVKGD---EVIFSEVSPRPH 273 (380)
T ss_pred E-------EECC--CCCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECC---cEEEEEeecCCC
Confidence 0 0111 11222 45688999999999998 556799999742 489999999887
No 29
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.61 E-value=5.6e-14 Score=135.32 Aligned_cols=225 Identities=20% Similarity=0.272 Sum_probs=144.9
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCCCCCCCcc-EEEEecCChh-----------------H--HHHHHHHHHhCCCeeeeC
Q 021495 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFD-VVLHKLSGME-----------------W--CKIIEDYRQKHPEVTILD 104 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~D-viLhK~t~~~-----------------~--~~~l~~y~~~hP~v~ViD 104 (311)
..-|...|+++|+.++.+|.+..-....-.| .++...+|.+ + ...+.. +++ -++++..
T Consensus 11 ~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e~e~i~~~~l~~-l~~-~g~~~~p 88 (352)
T TIGR01161 11 GRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFEFEHVDVEALEK-LEA-RGVKLFP 88 (352)
T ss_pred HHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeCcCcCCHHHHHH-HHh-CCCeECC
Confidence 3457788999999999999864211111111 1122223321 1 112333 333 2477889
Q ss_pred chhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCc
Q 021495 105 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR 184 (311)
Q Consensus 105 p~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~ 184 (311)
++++++.+.||..|-+.|+++ +|++|++..+.+. +++.+ ....++||+|+||.. |+.+|.++.++.++
T Consensus 89 ~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~--~~~~~g~P~vvKp~~--~g~~g~Gv~~v~~~ 156 (352)
T TIGR01161 89 SPDALAIIQDRLTQKQFLQKL-------GLPVPPFLVIKDE-EELDA--ALQELGFPVVLKART--GGYDGRGQYRIRNE 156 (352)
T ss_pred CHHHHHHhcCHHHHHHHHHHc-------CCCCCCccEeCCH-HHHHH--HHHHcCCCEEEEeCC--CCCCCCCEEEECCH
Confidence 999999999999999999875 8999999998532 21211 224689999999987 32246889999999
Q ss_pred cccccC-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEEecCCCCccccccccceeeeecccccccccCCCCCC
Q 021495 185 FSLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADL 256 (311)
Q Consensus 185 ~~L~~l-----~~P~vvQEfInH~G~~~KVyVVGd---~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~ 256 (311)
++|.+. +.++++||||+ +|+++.|.++.+ ++.+. |-. +.....+....+ .
T Consensus 157 ~el~~a~~~~~~~~~lvEe~I~-~~~E~sv~~~~~~~G~~~~~-----~~~---~~~~~~g~~~~~-------------~ 214 (352)
T TIGR01161 157 ADLPQAAKELGDRECIVEEFVP-FERELSVIVARSADGETAFY-----PVV---ENIHQDGILRYV-------------V 214 (352)
T ss_pred HHHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEEE-----CCc---ccEEeCCEEEEE-------------E
Confidence 888542 34899999996 478999888732 33221 211 100011121110 0
Q ss_pred CCCCCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 257 DPGIAELPP--RPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 257 ~p~~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
.| +.+++ .+.++++|.++.++||+. .+++|++++. +| ++||+|||.=||
T Consensus 215 ~p--~~~~~~~~~~~~~~a~~i~~~l~~~G~~~ve~~~~~-dg-~~~v~EinpR~~ 266 (352)
T TIGR01161 215 AP--AAVPDAIQARAEEIARRLMEELGYVGVLAVEMFVLP-DG-RLLINELAPRVH 266 (352)
T ss_pred CC--CCCCHHHHHHHHHHHHHHHHHcCceeEEEEEEEEeC-CC-cEEEEEecCCCC
Confidence 11 12222 467899999999999995 6779999975 34 689999999876
No 30
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.60 E-value=3.1e-14 Score=138.45 Aligned_cols=225 Identities=18% Similarity=0.177 Sum_probs=146.5
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEE-EecCCh------------------hHHHHHHHHHHhCCCeeeeCc
Q 021495 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVL-HKLSGM------------------EWCKIIEDYRQKHPEVTILDP 105 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviL-hK~t~~------------------~~~~~l~~y~~~hP~v~ViDp 105 (311)
..-|...|+++|+.++.+|.+..-....-.|-.+ .-..|. .+-....++++++ ..+..+
T Consensus 14 ~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e~e~i~~~~l~~l~~~--~~~~p~ 91 (372)
T PRK06019 14 GRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYEFENVPAEALDALAAR--VPVPPG 91 (372)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeCcCCCCHHHHHHHhcC--CeeCcC
Confidence 3457778899999999999864221111112111 111121 1111223344454 567899
Q ss_pred hhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcc
Q 021495 106 PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRF 185 (311)
Q Consensus 106 ~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~ 185 (311)
+++++.+.||..|-+.|.++ +|++|++..+++. +++.+ ....++||+|+||.. +|+ +|+++.++.+++
T Consensus 92 ~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~s~-~~l~~--~~~~~g~P~vlKp~~-~g~-~g~Gv~~v~~~~ 159 (372)
T PRK06019 92 PDALAIAQDRLTEKQFLDKL-------GIPVAPFAVVDSA-EDLEA--ALADLGLPAVLKTRR-GGY-DGKGQWVIRSAE 159 (372)
T ss_pred HHHHHHhcCHHHHHHHHHHC-------CCCCCCceEeCCH-HHHHH--HHHHcCCcEEEEeCC-CCc-CCCCeEEECCHH
Confidence 99999999999999999875 8999999998532 22222 234689999999987 233 578999999999
Q ss_pred ccccC-----CCCeEEEecccCCCeEEEEEEECC---EEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCC
Q 021495 186 SLSEL-----EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLD 257 (311)
Q Consensus 186 ~L~~l-----~~P~vvQEfInH~G~~~KVyVVGd---~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~ 257 (311)
+|... ..++++||||+ .++++.|.++.+ ++.+. +...++. ..+++.++. .
T Consensus 160 el~~a~~~~~~~~~ivEe~I~-~~~E~sv~~~~~~~G~~~~~--p~~e~~~------~~gi~~~~~-------------~ 217 (372)
T PRK06019 160 DLEAAWALLGSVPCILEEFVP-FEREVSVIVARGRDGEVVFY--PLVENVH------RNGILRTSI-------------A 217 (372)
T ss_pred HHHHHHHhcCCCCEEEEecCC-CCeEEEEEEEECCCCCEEEe--CCcccEE------eCCEEEEEE-------------C
Confidence 88653 45899999996 478999988754 23221 1111111 112222110 1
Q ss_pred CCCCCCC--ChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 258 PGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 258 p~~~~~p--~~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
| +.++ ..++++++|.++.++||+. ++++|++++. +| ++||+|||.=|+
T Consensus 218 p--a~~~~~~~~~~~~~a~~i~~~L~~~G~~~vEff~~~-dg-~~~v~EinpR~~ 268 (372)
T PRK06019 218 P--ARISAELQAQAEEIASRIAEELDYVGVLAVEFFVTG-DG-ELLVNEIAPRPH 268 (372)
T ss_pred C--CCCCHHHHHHHHHHHHHHHHHcCccceeEEEEEEcC-CC-eEEEEEecCCcc
Confidence 1 1122 2567899999999999986 6679999974 34 699999999875
No 31
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=99.59 E-value=1.7e-13 Score=129.81 Aligned_cols=173 Identities=20% Similarity=0.253 Sum_probs=118.3
Q ss_pred HHHHhCCCe-eeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCC
Q 021495 92 DYRQKHPEV-TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVD 170 (311)
Q Consensus 92 ~y~~~hP~v-~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~ 170 (311)
+.++.+ ++ ++.+++++++.+.||..|.+.+.++ +|++|++..+.+. +++...+....++||+|+||..+.
T Consensus 89 ~~l~~~-g~~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~~~~~P~viKP~~g~ 159 (326)
T PRK12767 89 DRFEEI-GVKVLVSSKEVIEICNDKWLTYEFLKEN-------GIPTPKSYLPESL-EDFKAALAKGELQFPLFVKPRDGS 159 (326)
T ss_pred HHHHHc-CcEEEeCCHHHHHHHhcHHHHHHHHHHc-------CCCCCCEEcccCH-HHHHhhhhcccCCCCEEEEeCCCC
Confidence 333343 44 5678999999999999999999885 7899999887432 222221123578999999997744
Q ss_pred CCCcceeeEEEcCccccccC---CCCeEEEecccCCCeEEEEEEEC---CEEEE-EEEecCCCCccccccccceeeeecc
Q 021495 171 GSAKSHELFLAYDRFSLSEL---EPPMLLQEFVNHGGILFKIYIIG---ETIKV-VRRFSLPNVSKRELAKVVSVFRFPR 243 (311)
Q Consensus 171 GS~~sh~m~lv~~~~~L~~l---~~P~vvQEfInH~G~~~KVyVVG---d~v~~-~~R~Slpn~~~~~~~~~~~~~~~~~ 243 (311)
.|.++.++.+.++|.+. ..++++|||| .|..+.+-++. +++.+ ..+..+.- ..+. ..
T Consensus 160 ---~s~gv~~v~~~~el~~~~~~~~~~lvqeyi--~G~e~~v~~~~~~~G~~~~~~~~~~~~~-~~g~------~~---- 223 (326)
T PRK12767 160 ---ASIGVFKVNDKEELEFLLEYVPNLIIQEFI--EGQEYTVDVLCDLNGEVISIVPRKRIEV-RAGE------TS---- 223 (326)
T ss_pred ---CccCeEEeCCHHHHHHHHHhCCCeEEEecc--CCceEEEEEEEcCCCCEEEEEEeeeeee-cCCc------ee----
Confidence 36789999999888653 3589999999 57777776653 34433 33332210 0000 00
Q ss_pred cccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCC
Q 021495 244 VSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFP 308 (311)
Q Consensus 244 vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfP 308 (311)
.. ...+.+.+.+++.++.++||++ .++||+++++ | ++++||||.-+
T Consensus 224 --~~--------------~~~~~~~i~~~~~~i~~~lg~~G~~~vd~~~~~--g-~~~viEiNpR~ 270 (326)
T PRK12767 224 --KG--------------VTVKDPELFKLAERLAEALGARGPLNIQCFVTD--G-EPYLFEINPRF 270 (326)
T ss_pred --EE--------------EEcCCHHHHHHHHHHHHhcCCeeeEEEEEEEEC--C-eEEEEEEeCCC
Confidence 00 0012366899999999999995 7789999985 4 69999999833
No 32
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=99.56 E-value=4.5e-14 Score=121.83 Aligned_cols=165 Identities=22% Similarity=0.326 Sum_probs=98.2
Q ss_pred HhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC
Q 021495 111 HLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL 190 (311)
Q Consensus 111 ~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l 190 (311)
+|.||..|.+.+.++ +|++|++..+.+. +++.+ ....++||+|+||..+.| |.++.++.++++|.+.
T Consensus 1 ~~~dK~~~~~~~~~~-------gv~~P~~~~~~~~-~~~~~--~~~~~~~p~vvKp~~g~g---s~gv~~~~~~~~l~~~ 67 (184)
T PF13535_consen 1 RCNDKYRMRELLKKA-------GVPVPKTRIVDSE-EELRA--FAEDLGFPFVVKPVDGSG---SRGVFIVHSPEELEAA 67 (184)
T ss_dssp -TCCHHHHHHHHHHH-------TS----EEEECSH-HHHHH--HHHHSSSSEEEEESS-ST---TTT-EEESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHc-------CcCCCCEEEECCH-HHHHH--HHHHcCCCEEEEcCcccc---CCCEEEeCCHHHHHHH
Confidence 478999999999875 8999999998532 22222 234566999999999554 5789999999998764
Q ss_pred -----------CCCeEEEecccCCCeEEEEEEECCEEEEE--EEecCCCCccccccccceeeeecccccccccCCCCCCC
Q 021495 191 -----------EPPMLLQEFVNHGGILFKIYIIGETIKVV--RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLD 257 (311)
Q Consensus 191 -----------~~P~vvQEfInH~G~~~KVyVVGd~v~~~--~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~ 257 (311)
..++++||||+.....+.+++.++++++. .+.. .... ...... ... +.. .
T Consensus 68 ~~~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~~~~~~~~~~~-~~~~-~~~~~~-~~~--------~~~------~ 130 (184)
T PF13535_consen 68 LAEIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGEVVFAGISRYV-RQSP-GHFSGG-VPT--------GYS------V 130 (184)
T ss_dssp HHHHHHHHS-HSSSEEEEE---SEEEEEEEEEETTEEEEEEEEEEE-EEET-CCCSSS-EEE--------EEE------E
T ss_pred HHHHHHhcccCCccEEEEEeeeeeeEEEEEEEEcceEEEEEEEEEe-cccc-cccccc-eee--------eee------c
Confidence 35799999997333444555666666432 2221 1000 000000 000 000 0
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCC--cEeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 258 PGIAELPPRPLLERLARELRHRLGL--RLFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 258 p~~~~~p~~~~~~~lA~~l~~~LGL--~lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
+.+.+..+.+++++.++.+++|+ ..|++|++.+.+ | ++++||||.=||
T Consensus 131 --~~~~~~~~~~~~~~~~~~~~~g~~~G~~~id~~~~~~-g-~~~~iEiN~R~~ 180 (184)
T PF13535_consen 131 --PSEPPLPEELRDLARKLLRALGYRNGFFHIDFIVDPD-G-ELYFIEINPRFG 180 (184)
T ss_dssp --S--CEHHHHHHHHHHHHHHHHT--SEEEEEEEEEETC-C-EEEEEEEESS--
T ss_pred --ccccccHHHHHHHHHHHHHHcCCceEEEEEEEEEeCC-C-CEEEEEECccCC
Confidence 01111247799999999999998 777899999975 6 799999998665
No 33
>PRK07206 hypothetical protein; Provisional
Probab=99.56 E-value=2.9e-13 Score=132.72 Aligned_cols=223 Identities=15% Similarity=0.160 Sum_probs=141.2
Q ss_pred HHHHHHHhCCCeEEEeeCCCCCCC----------------------------CCCccEEEEecCChhHHHHHHHHHHhCC
Q 021495 47 KLEILARNKGISFVAIDQNRPLSD----------------------------QGPFDVVLHKLSGMEWCKIIEDYRQKHP 98 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~----------------------------qgp~DviLhK~t~~~~~~~l~~y~~~hP 98 (311)
.+.+.++++|+.++.+|.+..... ...+|+|+. .++ ... .+.+.+.++-
T Consensus 16 ~~~~a~~~~G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~d~vi~-~~e-~~~-~~~a~l~~~l 92 (416)
T PRK07206 16 FLAPAFKKRGIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRKLGPEAIIA-GAE-SGV-ELADRLAEIL 92 (416)
T ss_pred HHHHHHHHcCCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHHcCCCEEEE-CCC-ccH-HHHHHHHHhc
Confidence 477888999999998885532110 112344443 111 111 2233344555
Q ss_pred CeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCC---cEEEeeCcCCCCCcc
Q 021495 99 EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKL---PLVAKPLVVDGSAKS 175 (311)
Q Consensus 99 ~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~f---P~VvKP~~a~GS~~s 175 (311)
+.+.-+++++++.+.||..|.+.|.++ +|++|++..+.+ .++..+. ...++| |+|+||..+.| |
T Consensus 93 ~l~~~~~~~~~~~~~dK~~~r~~l~~~-------gi~~p~~~~~~~-~~e~~~~--~~~~g~~~~P~VvKP~~g~g---s 159 (416)
T PRK07206 93 TPQYSNDPALSSARRNKAEMINALAEA-------GLPAARQINTAD-WEEAEAW--LRENGLIDRPVVIKPLESAG---S 159 (416)
T ss_pred CCCcCCChhhHHHhhCHHHHHHHHHHc-------CCCcccEEecCC-HHHHHHH--HHhcCCCCCCEEEeCCCCCC---C
Confidence 666678899999999999999999885 899999998742 2222222 234556 99999988444 5
Q ss_pred eeeEEEcCccccccC--------------CCCeEEEecccCCCeEEEEEEE--CCEEEE--EEEecCCCCccccccccce
Q 021495 176 HELFLAYDRFSLSEL--------------EPPMLLQEFVNHGGILFKIYII--GETIKV--VRRFSLPNVSKRELAKVVS 237 (311)
Q Consensus 176 h~m~lv~~~~~L~~l--------------~~P~vvQEfInH~G~~~KVyVV--Gd~v~~--~~R~Slpn~~~~~~~~~~~ 237 (311)
.++.++.+.++|.+. ..++++||||. |..|-|-++ ++++.+ ..+..-.... .+
T Consensus 160 ~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~E~sv~~~~~~G~~~~~~~~~~~~~~~~-------~~ 230 (416)
T PRK07206 160 DGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI--GTEYVVNFVSLDGNHLVTEIVRYHKTSLN-------SG 230 (416)
T ss_pred CCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--cEEEEEEEEEECCEEEEEEeEEeeecccC-------CC
Confidence 789999999887541 24799999995 777777555 455443 2222111100 01
Q ss_pred eeeecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 238 VFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 238 ~~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~--lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
.+.+.. ....| ...+..+.+.+++.++.++||+. .+.+|++++. .| +++||||.=||
T Consensus 231 ~~~~~~----------~~~~p--~~~~~~~~i~~~~~~~~~alg~~~G~~h~E~~~~~-~g--~~liEin~R~~ 289 (416)
T PRK07206 231 STVYDY----------DEFLD--YSEPEYQELVDYTKQALDALGIKNGPAHAEVMLTA-DG--PRLIEIGARLD 289 (416)
T ss_pred Cceecc----------cccCC--ccHHHHHHHHHHHHHHHHHcCCccCCceEEEEEcC-CC--CEEEEECCccC
Confidence 110000 00011 11123567889999999999994 6789999975 34 68999998765
No 34
>PRK06849 hypothetical protein; Provisional
Probab=99.56 E-value=9.6e-13 Score=128.39 Aligned_cols=165 Identities=19% Similarity=0.275 Sum_probs=111.2
Q ss_pred eeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEE
Q 021495 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFL 180 (311)
Q Consensus 101 ~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~l 180 (311)
+...++++++.++||..+.+.++++ +|++|++..+++. +++.+ +.....+||+|+||..++| ++++.+
T Consensus 103 v~~~~~~~~~~~~DK~~~~~~~~~~-------GipvP~t~~v~~~-~~l~~-~~~~~~~~P~vlKP~~~~~---~~~v~~ 170 (389)
T PRK06849 103 VLHFDFELLLLLHNKWEFAEQARSL-------GLSVPKTYLITDP-EAIRN-FMFKTPHTPYVLKPIYSRF---VRRVDL 170 (389)
T ss_pred EEcCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCEEEeCCH-HHHHH-HhhcCCCCcEEEEeCcccC---CCeEEE
Confidence 3467899999999999999999886 8999999998532 22211 2222348999999998554 467788
Q ss_pred EcCccccccC----CCCeEEEecccCCCeEE--EEEEECCEEEEE-EEecCCCCccccccccceeeeecccccccccCCC
Q 021495 181 AYDRFSLSEL----EPPMLLQEFVNHGGILF--KIYIIGETIKVV-RRFSLPNVSKRELAKVVSVFRFPRVSSAAASADD 253 (311)
Q Consensus 181 v~~~~~L~~l----~~P~vvQEfInH~G~~~--KVyVVGd~v~~~-~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~ 253 (311)
+.+++.++.+ ..|+++||||. |..+ -.++.++++.+. .+. +....+ .+. .
T Consensus 171 ~~~~~~l~~~~~~~~~~~ivQe~I~--G~e~~~~~~~~~G~v~~~~~~~--~~~~~~-----~~~-----------~--- 227 (389)
T PRK06849 171 LPKEAALKELPISKDNPWVMQEFIQ--GKEYCSYSIVRSGELRAHSCYK--PEYCAG-----SGA-----------Q--- 227 (389)
T ss_pred ecCHHHhcccccCCCCCeEEEEEec--CCeEEEEEEEECCEEEEEEEee--ccccCC-----CCc-----------e---
Confidence 8887777765 35899999996 5444 444555665442 111 110000 000 0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCC
Q 021495 254 ADLDPGIAELPPRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYF 307 (311)
Q Consensus 254 ~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyf 307 (311)
...++ . ..+.+++++.++.++||++ .++||++.+. +| ++|+||||.=
T Consensus 228 ~~~~~----~-~~~~l~~~~~~~~~~l~~~G~~~~df~~~~-~g-~~~~iEiNpR 275 (389)
T PRK06849 228 IAFQP----I-NHPRIEEFVTHFVKELNYTGQISFDFIETE-NG-DAYPIECNPR 275 (389)
T ss_pred eEeEE----C-CcHHHHHHHHHHHHhcCceeEEEEEEEECC-CC-CEEEEEecCC
Confidence 00011 0 1356899999999999998 6679999873 55 6999999963
No 35
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.50 E-value=1.3e-12 Score=127.27 Aligned_cols=223 Identities=13% Similarity=0.223 Sum_probs=141.0
Q ss_pred chhHHHHHHHhCCCeEEEeeCCCCCCC-----------------------CCCccEEEEecCChhHHHHHHHHHHhCCCe
Q 021495 44 LQPKLEILARNKGISFVAIDQNRPLSD-----------------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEV 100 (311)
Q Consensus 44 ~~~~l~~~~~~~gi~~v~iD~~~pl~~-----------------------qgp~DviLhK~t~~~~~~~l~~y~~~hP~v 100 (311)
....++..++++|+.++.+|.+..-.. ...+|+|+--..+. ....+.+ +.+. ++
T Consensus 23 ~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~-~~~~~~~-l~~~-g~ 99 (395)
T PRK09288 23 LGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEAI-ATDALVE-LEKE-GF 99 (395)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCcC-CHHHHHH-HHhc-CC
Confidence 344577778999999999887642110 11345554322211 1122333 3333 67
Q ss_pred eeeCchhHHHHhcCHHHHHHHHH-hccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeE
Q 021495 101 TILDPPDAIKHLHNRQSMLQDVA-DLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 179 (311)
Q Consensus 101 ~ViDp~~ai~~l~dR~~~l~~l~-~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~ 179 (311)
++..++++++.+.||..+-+.+. ++ +|++|++..+++. +++.+ ....++||+|+||.. |+ .|.++.
T Consensus 100 ~~~~~~~a~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~s~-~~l~~--~~~~~g~P~VvKP~~--g~-~s~Gv~ 166 (395)
T PRK09288 100 NVVPTARATRLTMNREGIRRLAAEEL-------GLPTSPYRFADSL-EELRA--AVEEIGYPCVVKPVM--SS-SGKGQS 166 (395)
T ss_pred eeCCCHHHHHHHhCHHHHHHHHHHhC-------CCCCCCceEECCH-HHHHH--HHHhcCCCEEEEeCC--Cc-CCCCeE
Confidence 77788999999999999888774 44 8999999988532 22212 124689999999986 44 467899
Q ss_pred EEcCccccccC-----------CCCeEEEecccCCCeEEEEEEECCE---EEEEEEecCCCCccccccccceeeeecccc
Q 021495 180 LAYDRFSLSEL-----------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVS 245 (311)
Q Consensus 180 lv~~~~~L~~l-----------~~P~vvQEfInH~G~~~KVyVVGd~---v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs 245 (311)
++.++++|.+. ..++++||||+ .|.++.|.++.+. .... ....++. . .+.+..
T Consensus 167 ~v~~~~el~~~~~~~~~~~~~~~~~~lvEefi~-~~~E~sv~~~~~~~~~~~~~--~~~~~~~-----~-~~~~~~---- 233 (395)
T PRK09288 167 VVRSPEDIEKAWEYAQEGGRGGAGRVIVEEFID-FDYEITLLTVRAVDGGTHFC--APIGHRQ-----E-DGDYRE---- 233 (395)
T ss_pred EECCHHHHHHHHHHHHhhccccCCCEEEEEecC-CCEEEEEEEEEcCCCCEEEe--cCcccEE-----E-CCEEEE----
Confidence 99999887542 25899999996 4789998887532 2221 1111110 0 011100
Q ss_pred cccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 246 SAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 246 ~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~l-fG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
...| +.+++ .++++++|.++.++||..- +.+|++++++ .+||||||.=||
T Consensus 234 ---------~~~p--~~l~~~~~~~i~~~~~~~~~~L~~~G~~~ve~~~~~~---~~~viEinpR~~ 286 (395)
T PRK09288 234 ---------SWQP--QPMSPAALEEAQEIAKKVTDALGGRGLFGVELFVKGD---EVYFSEVSPRPH 286 (395)
T ss_pred ---------EECC--CCCCHHHHHHHHHHHHHHHHHcCCeeEEEEEEEEeCC---eEEEEEecCCCC
Confidence 0011 11221 4567899999999999533 4599999753 489999998876
No 36
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.49 E-value=3.8e-12 Score=130.55 Aligned_cols=240 Identities=15% Similarity=0.103 Sum_probs=154.6
Q ss_pred CccEEEEEEeCchhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCCcc-EEEEecCChh------------------H
Q 021495 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFD-VVLHKLSGME------------------W 86 (311)
Q Consensus 26 ~~~~~Vgy~~~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~D-viLhK~t~~~------------------~ 86 (311)
....+||....- ....-+...|+++|++++.+|.+..-....-.| .+.....|.+ .
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 346678887776 344457788999999999999875211000011 1111122210 0
Q ss_pred -HHHHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEe
Q 021495 87 -CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAK 165 (311)
Q Consensus 87 -~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvK 165 (311)
...+ +.++++ ++++..++++++.+.||..+-+.|.++ +|++|++..+.+. +++.+ ....++||+|+|
T Consensus 95 ~~~~l-~~le~~-gi~v~ps~~al~i~~DK~~~K~~l~~~-------GIptp~~~~v~~~-~el~~--~~~~ig~P~VvK 162 (577)
T PLN02948 95 DVDTL-EALEKQ-GVDVQPKSSTIRIIQDKYAQKVHFSKH-------GIPLPEFMEIDDL-ESAEK--AGDLFGYPLMLK 162 (577)
T ss_pred CHHHH-HHHHhc-CCccCCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeEEeCCH-HHHHH--HHHhcCCcEEEE
Confidence 1223 333332 566778899999999999999999875 8999999988532 22211 235789999999
Q ss_pred eCcCCCCCcceeeEEEcCccccccC-------CCCeEEEecccCCCeEEEEEEECC---EEEEEEEecCCCCcccccccc
Q 021495 166 PLVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGE---TIKVVRRFSLPNVSKRELAKV 235 (311)
Q Consensus 166 P~~a~GS~~sh~m~lv~~~~~L~~l-------~~P~vvQEfInH~G~~~KVyVVGd---~v~~~~R~Slpn~~~~~~~~~ 235 (311)
|.. |+.+|.++.++.++++|... +.++++|+||+ +.+++-|.|+++ .+.+ .|.. +....
T Consensus 163 P~~--ggs~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~-~~~EisV~v~r~~~G~i~~-----~p~~---E~~~~ 231 (577)
T PLN02948 163 SRR--LAYDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAP-FVKELAVMVARSRDGSTRC-----YPVV---ETIHK 231 (577)
T ss_pred eCC--CCCCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCC-CCeEEEEEEEECCCCCEEE-----ecCc---ccEEE
Confidence 987 33357889999999887542 46899999995 358999999953 2322 2221 11111
Q ss_pred ceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 236 VSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 236 ~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~l-fG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
.+++.+ + ..| +.+++ .++++++|.++.++||..- +.+|++++. .| .+||+|||.-||.
T Consensus 232 ~~~~~~---~----------~~P--a~l~~~~~~~~~~~A~~~~~aLg~~Gv~~vEffv~~-dG-~v~v~EInpRpg~ 292 (577)
T PLN02948 232 DNICHV---V----------EAP--ANVPWKVAKLATDVAEKAVGSLEGAGVFGVELFLLK-DG-QILLNEVAPRPHN 292 (577)
T ss_pred CCeeEE---E----------EEC--CCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEcC-CC-cEEEEEEeCCCCC
Confidence 111111 0 011 12222 5678999999999998764 469999975 34 6899999999973
No 37
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.49 E-value=1.2e-12 Score=142.72 Aligned_cols=227 Identities=18% Similarity=0.248 Sum_probs=143.6
Q ss_pred ccchhHHHHHHHhCCCeEEEeeCCCCC-CC-----------------------CCCccEEEEecCChhHHHHHHHHHHhC
Q 021495 42 SFLQPKLEILARNKGISFVAIDQNRPL-SD-----------------------QGPFDVVLHKLSGMEWCKIIEDYRQKH 97 (311)
Q Consensus 42 ~~~~~~l~~~~~~~gi~~v~iD~~~pl-~~-----------------------qgp~DviLhK~t~~~~~~~l~~y~~~h 97 (311)
++-.-.++..++++|+..+-+|.+-.. +. ....|.|+--..++. .-.+...+++
T Consensus 574 dy~~v~~i~alk~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v~~i~~~e~~dgVi~~~g~~~-~~~la~~le~- 651 (1066)
T PRK05294 574 DYCCVHAVLALREAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPKGVIVQFGGQT-PLKLAKALEA- 651 (1066)
T ss_pred chhHHHHHHHHHHCCCEEEEEeCCccccccccchhhheeecCCCHHHHHHHHHHcCCCEEEEEeCchh-HHHHHHHHHH-
Confidence 444455789999999999999976422 11 011344443333322 1233333433
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcce
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh 176 (311)
-|++++ .++++++.+.||..+.+.|.++ +|++|++..+.+. ++..+ ....++||+|+||..+ + +|.
T Consensus 652 ~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~-------GIp~P~~~~~~s~-ee~~~--~~~~igyPvvVKP~~~--~-Gg~ 718 (1066)
T PRK05294 652 AGVPILGTSPDAIDLAEDRERFSKLLEKL-------GIPQPPNGTATSV-EEALE--VAEEIGYPVLVRPSYV--L-GGR 718 (1066)
T ss_pred CCCceeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCeEEECCH-HHHHH--HHHhcCCCeEEEeCCC--C-CCC
Confidence 367765 6789999999999999999885 8999999988532 11212 2356899999999774 3 468
Q ss_pred eeEEEcCccccccC---------CCCeEEEecccCCCeEEEEEEEC--CEEEEE--EEe-cCCCCccccccccceeeeec
Q 021495 177 ELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIG--ETIKVV--RRF-SLPNVSKRELAKVVSVFRFP 242 (311)
Q Consensus 177 ~m~lv~~~~~L~~l---------~~P~vvQEfInH~G~~~KVyVVG--d~v~~~--~R~-Slpn~~~~~~~~~~~~~~~~ 242 (311)
+|.++.|+++|..+ +.|+++||||... +.+-|-++. +.+.+. .+. ....+..++
T Consensus 719 Gv~iv~~~eeL~~~~~~a~~~s~~~~vlIEefI~G~-~E~sV~~v~dg~~v~i~~i~e~i~~~gv~~Gd----------- 786 (1066)
T PRK05294 719 AMEIVYDEEELERYMREAVKVSPDHPVLIDKFLEGA-IEVDVDAICDGEDVLIGGIMEHIEEAGVHSGD----------- 786 (1066)
T ss_pred cEEEECCHHHHHHHHHHHHhhCCCCcEEEEecCCCC-EEEEEEEEecCCeEEEeeeEEeeeeccccCCC-----------
Confidence 89999999988642 5689999999632 255555554 333321 111 000000000
Q ss_pred ccccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 243 RVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 243 ~vs~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
+ ...-| +..++ ..+.++++|.++.++||+. ++++|+++++ + .+||||||.-|+
T Consensus 787 s----------~~~~p-~~~l~~~~~~~i~~~a~~i~~aLg~~G~~~vqf~~~~--~-~~yViEiNpR~s 842 (1066)
T PRK05294 787 S----------ACSLP-PQTLSEEIIEEIREYTKKLALELNVVGLMNVQFAVKD--D-EVYVIEVNPRAS 842 (1066)
T ss_pred C----------cEEec-CCCCCHHHHHHHHHHHHHHHHHcCCeeeEEEEEEEEC--C-eEEEEEEecCCC
Confidence 0 00001 01122 1457899999999999995 5569999974 3 589999998665
No 38
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.49 E-value=3e-12 Score=139.33 Aligned_cols=243 Identities=17% Similarity=0.270 Sum_probs=149.8
Q ss_pred CccEEEEEEe---CchhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCC------------------------CCccEEE
Q 021495 26 PERLVVGYAL---TSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------------------GPFDVVL 78 (311)
Q Consensus 26 ~~~~~Vgy~~---~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~q------------------------gp~DviL 78 (311)
.+.+++|--. -....-+|-.-.+++.++++|+..+.+|.+-..... ...|.|+
T Consensus 555 ~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~npetvs~d~~~~D~ly~ep~~~e~vl~i~~~e~idgVI 634 (1050)
T TIGR01369 555 KKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYNPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPEGVI 634 (1050)
T ss_pred ceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecCCccccccccccceEEEecCCHHHHHHHHhhcCCCEEE
Confidence 3455555321 122233444445788999999999999886322110 1123332
Q ss_pred EecCChhHHHHHHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcC
Q 021495 79 HKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAG 157 (311)
Q Consensus 79 hK~t~~~~~~~l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~ 157 (311)
--..++ ....+...+++ .+++++ .++++++.+.||..+.+.|.++ +|++|++..+.+ .++..+ ....
T Consensus 635 ~~~gg~-~~~~la~~le~-~Gi~i~G~s~~~i~~~~DK~~f~~lL~~~-------GIp~P~~~~v~s-~ee~~~--~~~~ 702 (1050)
T TIGR01369 635 VQFGGQ-TPLNLAKALEE-AGVPILGTSPESIDRAEDREKFSELLDEL-------GIPQPKWKTATS-VEEAVE--FASE 702 (1050)
T ss_pred EccCcH-hHHHHHHHHHH-CCCcEECCCHHHHHHHCCHHHHHHHHHHC-------CcCCCCeEEECC-HHHHHH--HHHh
Confidence 222121 11123333333 367765 7899999999999999999885 899999998853 222222 2356
Q ss_pred CCCcEEEeeCcCCCCCcceeeEEEcCccccccC---------CCCeEEEecccCCCeEEEEEE--ECCEEEEE--EEe-c
Q 021495 158 LKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYI--IGETIKVV--RRF-S 223 (311)
Q Consensus 158 l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l---------~~P~vvQEfInH~G~~~KVyV--VGd~v~~~--~R~-S 223 (311)
++||+|+||..+.| |.+|.+++|+++|... +.|+++||||+. |..+-|-+ -|+++.+. ... .
T Consensus 703 igyPvIVKP~~~~G---g~gv~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~-G~E~~Vd~l~d~g~v~i~~i~e~~~ 778 (1050)
T TIGR01369 703 IGYPVLVRPSYVLG---GRAMEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLED-AVEVDVDAVSDGEEVLIPGIMEHIE 778 (1050)
T ss_pred cCCCEEEEECCCCC---CCCeEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCC-CeEEEEEEEEeCCEEEEEEEEEeec
Confidence 89999999988544 5889999999988652 468999999963 66666644 45555542 111 0
Q ss_pred CCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEE
Q 021495 224 LPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFY 300 (311)
Q Consensus 224 lpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~l-fG~Dvi~~~~tg~~~~ 300 (311)
...+..++ + ...-|. ..+++ .+.++++|.++.++||+.- +++|+++++ + .+|
T Consensus 779 ~~gv~sGd-----------s----------~~~~P~-~~l~~~~~~~i~~~a~ki~~aLgi~G~~~vqf~~~~--~-~~y 833 (1050)
T TIGR01369 779 EAGVHSGD-----------S----------TCVLPP-QTLSAEIVDRIKDIVRKIAKELNVKGLMNIQFAVKD--G-EVY 833 (1050)
T ss_pred ccCCcCCC-----------c----------eEEecC-CCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEEC--C-eEE
Confidence 00000000 0 000010 01121 3578999999999999864 359999974 3 689
Q ss_pred EEEecCCCC
Q 021495 301 VIDINYFPG 309 (311)
Q Consensus 301 ViDVNyfPG 309 (311)
|||||.-++
T Consensus 834 vIEvNpR~s 842 (1050)
T TIGR01369 834 VIEVNPRAS 842 (1050)
T ss_pred EEEEeCCCC
Confidence 999998765
No 39
>PRK05586 biotin carboxylase; Validated
Probab=99.47 E-value=3e-12 Score=127.31 Aligned_cols=173 Identities=14% Similarity=0.220 Sum_probs=117.0
Q ss_pred CCee-eeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCc
Q 021495 98 PEVT-ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 174 (311)
Q Consensus 98 P~v~-ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~--~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~ 174 (311)
-+++ +--++++++.+.||..|-+.+.++ +|++|++. .+. +.++..+ ....++||+|+||.. |+ +
T Consensus 98 ~gi~~~g~s~~~~~~~~DK~~~k~~l~~~-------GIpvp~~~~~~~~-~~~e~~~--~~~~igyPvvvKP~~--gg-g 164 (447)
T PRK05586 98 CNIVFIGPDSETIELMGNKSNAREIMIKA-------GVPVVPGSEGEIE-NEEEALE--IAKEIGYPVMVKASA--GG-G 164 (447)
T ss_pred CCCcEECcCHHHHHhhCCHHHHHHHHHHC-------CCCCCCCcccccC-CHHHHHH--HHHHcCCCEEEEECC--CC-C
Confidence 3554 557889999999999999998875 89999874 333 2221211 234789999999988 44 4
Q ss_pred ceeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-EEe-cCCCCccccccccc
Q 021495 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVV-RRF-SLPNVSKRELAKVV 236 (311)
Q Consensus 175 sh~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~---v~~~-~R~-Slpn~~~~~~~~~~ 236 (311)
|+++.++.++++|.+. +.++++||||+ +++.+.|.|+++. +... .|. |.. ..+.
T Consensus 165 g~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~-g~~ei~v~v~~d~~G~~~~~~~~~~~~~-------~~~~ 236 (447)
T PRK05586 165 GRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIE-NPKHIEFQILGDNYGNVVHLGERDCSLQ-------RRNQ 236 (447)
T ss_pred CCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCC-CCeEEEEEEEECCCCCEEEEeceecceE-------eccc
Confidence 7899999999987542 35799999996 3588999999863 2222 111 100 0000
Q ss_pred eeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCC
Q 021495 237 SVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 237 ~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
... . ..|.. .+++ .+.+.++|.++.++||+.-.+ +|++++. +| ++|++|||.=||
T Consensus 237 ~~~-----~----------~~p~~-~l~~~~~~~l~~~a~~i~~aLg~~g~~~vEf~~~~-~g-~~~~iEvNpR~~ 294 (447)
T PRK05586 237 KVL-----E----------EAPSP-VMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDK-DG-NFYFMEMNTRIQ 294 (447)
T ss_pred ceE-----E----------EcCCC-CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEcC-CC-CEEEEEEECCCC
Confidence 000 0 00110 1222 457899999999999998876 9999985 35 699999998765
No 40
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.46 E-value=8.6e-12 Score=124.94 Aligned_cols=173 Identities=17% Similarity=0.213 Sum_probs=117.8
Q ss_pred Cee-eeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcc
Q 021495 99 EVT-ILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (311)
Q Consensus 99 ~v~-ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~--~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~s 175 (311)
+++ +-.++++++.+.||..+-+.+.++ +|++|++. .+. +.++..+ ....++||+|+||..++ +|
T Consensus 102 gi~~igps~~ai~~~~DK~~~r~~l~~~-------GIp~~p~~~~~v~-~~~e~~~--~~~~igyPvvvKp~~gg---gg 168 (467)
T PRK12833 102 GLIFVGPDAQTIRTMGDKARARRTARRA-------GVPTVPGSDGVVA-SLDAALE--VAARIGYPLMIKAAAGG---GG 168 (467)
T ss_pred CCCccCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcCcCcC-CHHHHHH--HHHHhCCCEEEEECCCC---CC
Confidence 554 456789999999999999999875 78888775 443 2221111 23468999999998844 46
Q ss_pred eeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCEE--E-EEEEe-cCCCCcccccccccee
Q 021495 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGETI--K-VVRRF-SLPNVSKRELAKVVSV 238 (311)
Q Consensus 176 h~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~v--~-~~~R~-Slpn~~~~~~~~~~~~ 238 (311)
.+|.++.++++|.+. +.++++|+||+. |+.+-|-|+||.- + +..|. |+... ....
T Consensus 169 ~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~-~~ei~v~v~~dg~~~~~~~~~~~~~~r~-------~~ki 240 (467)
T PRK12833 169 RGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIAR-ARHIEVQILGDGERVVHLFERECSLQRR-------RQKI 240 (467)
T ss_pred CeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC-CEEEEEEEEeCCCcEEEEEEeecccccC-------CccE
Confidence 899999999888641 457999999974 7999999999852 2 22332 22100 0000
Q ss_pred eeecccccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCC
Q 021495 239 FRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 239 ~~~~~vs~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
+.. .|. ..++ ..+.+.++|.++.++||+.-.+ +|++++..+| .+|++|||.=++
T Consensus 241 ~e~---------------~p~-~~l~~~~~~~l~~~a~~~~~alg~~G~~~vEf~~~~~~g-~~~~iEvNpR~~ 297 (467)
T PRK12833 241 LEE---------------APS-PSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARG-EFYFIEMNTRIQ 297 (467)
T ss_pred EEE---------------CCC-CCCCHHHHHHHHHHHHHHHHHcCCcCcceEEEEEecCCC-CEEEEEEECCCC
Confidence 100 010 0111 1467899999999999998665 9999985445 689999997654
No 41
>PRK08462 biotin carboxylase; Validated
Probab=99.44 E-value=5.6e-12 Score=125.14 Aligned_cols=212 Identities=14% Similarity=0.178 Sum_probs=136.7
Q ss_pred hccc-hhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeee-eCchhHHHHhcCHHHH
Q 021495 41 KSFL-QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTI-LDPPDAIKHLHNRQSM 118 (311)
Q Consensus 41 ~~~~-~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~V-iDp~~ai~~l~dR~~~ 118 (311)
+++. .+.++++|++.+++.+.-=.+ . +.. . ..+.+..++ -|+++ -.++++++.+.||..|
T Consensus 60 ~~y~~~~~l~~~~~~~~~D~i~pg~g-~-------------lse-~--~~~a~~~e~-~Gi~~~g~~~~~~~~~~dK~~~ 121 (445)
T PRK08462 60 ESYLNIPAIISAAEIFEADAIFPGYG-F-------------LSE-N--QNFVEICSH-HNIKFIGPSVEVMALMSDKSKA 121 (445)
T ss_pred cccCCHHHHHHHHHHcCCCEEEECCC-c-------------ccc-C--HHHHHHHHH-CCCeEECcCHHHHHHhCCHHHH
Confidence 4664 567999999999987654221 1 111 1 123333333 46654 5888999999999999
Q ss_pred HHHHHhccccCCCCccccCcEE--EEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC------
Q 021495 119 LQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------ 190 (311)
Q Consensus 119 l~~l~~l~~~~~~~~i~~P~~~--~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l------ 190 (311)
.+.+.++ +|++|++. .+. +.++... ....++||+|+||..++ +|.+|.++.|+++|.+.
T Consensus 122 r~~l~~~-------gIp~pp~~~~~~~-~~~~~~~--~~~~~g~PvvvKP~~g~---gs~Gv~~v~~~~eL~~~~~~~~~ 188 (445)
T PRK08462 122 KEVMKRA-------GVPVIPGSDGALK-SYEEAKK--IAKEIGYPVILKAAAGG---GGRGMRVVEDESDLENLYLAAES 188 (445)
T ss_pred HHHHHHC-------CCCCCCCcccccC-CHHHHHH--HHHHcCCCEEEEeCCCC---CCCCeEEECCHHHHHHHHHHHHH
Confidence 9999875 78898754 232 2111111 23568999999998844 46899999999988642
Q ss_pred -------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEEe-cCCCCccccccccceeeeecccccccccCCCCCCCC
Q 021495 191 -------EPPMLLQEFVNHGGILFKIYIIGET---IKV-VRRF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDP 258 (311)
Q Consensus 191 -------~~P~vvQEfInH~G~~~KVyVVGd~---v~~-~~R~-Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p 258 (311)
+.++++||||. +++.+.|.++|+. +.. ..|. +.... ....+ .. .|
T Consensus 189 ~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~~~~g~~~~~g~~~~~~~~~-------~~~~~-----~~----------~p 245 (445)
T PRK08462 189 EALSAFGDGTMYMEKFIN-NPRHIEVQILGDKHGNVIHVGERDCSLQRR-------HQKLI-----EE----------SP 245 (445)
T ss_pred HHHhccCCCcEEEeccCC-CCeEEEEEEEECCCCCEEEEEeccccceec-------ccceE-----EE----------cC
Confidence 34699999996 4778999888653 222 1111 11100 00000 00 01
Q ss_pred CCCCCC--ChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCC
Q 021495 259 GIAELP--PRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 259 ~~~~~p--~~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
.. .++ ..+.+.++|.++.++||+.-.+ ||++++.+ | .+||+|||.=+|
T Consensus 246 ~~-~l~~~~~~~i~~~a~~~~~alg~~G~~~ve~~~~~~-g-~~~viEiNpR~~ 296 (445)
T PRK08462 246 AV-VLDEKTRERLHETAIKAAKAIGYEGAGTFEFLLDSN-L-DFYFMEMNTRLQ 296 (445)
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHcCCCCcceEEEEEeCC-C-CEEEEEEECCcC
Confidence 00 011 1467899999999999998665 99999853 3 589999998664
No 42
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.44 E-value=4.2e-12 Score=136.15 Aligned_cols=223 Identities=17% Similarity=0.164 Sum_probs=138.3
Q ss_pred HHHHHHHhCCCeEEEeeCCCCCCC--CCCcc-EEEEecCCh--------------------hHHHHHHHHHHhCCCeeee
Q 021495 47 KLEILARNKGISFVAIDQNRPLSD--QGPFD-VVLHKLSGM--------------------EWCKIIEDYRQKHPEVTIL 103 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~--qgp~D-viLhK~t~~--------------------~~~~~l~~y~~~hP~v~Vi 103 (311)
.|+..++++|+.++.++.+.+... +.-.| .+.+-.+|. ++.-.+...+.++-+++-
T Consensus 18 ~l~~aa~~lG~~vi~v~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~~~i~~V~~~se~~v~~aa~lae~lglpg- 96 (887)
T PRK02186 18 LLLRKALLRGFTPYFLTANRGKYPFLDAIRVVTISADTSDPDRIHRFVSSLDGVAGIMSSSEYFIEVASEVARRLGLPA- 96 (887)
T ss_pred HHHHHHHHcCCEEEEEeCCchhhchhhhcceeEEEcCCCCHHHHHHHHHhcCCCCEEEeCchhhHHHHHHHHHHhCcCC-
Confidence 377889999999999986543211 10122 222222221 111112223334345554
Q ss_pred CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcC
Q 021495 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYD 183 (311)
Q Consensus 104 Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~ 183 (311)
+++++++.+.||..|-+.|.++ +|++|++..+.+. ++..+ ....++||+|+||..+.| |.++.++.|
T Consensus 97 ~~~ea~~~~~dK~~~r~~L~~~-------GIp~P~~~~v~~~-~e~~~--~~~~~~~PvVVKP~~g~g---S~GV~~v~~ 163 (887)
T PRK02186 97 ANTEAIRTCRDKKRLARTLRDH-------GIDVPRTHALALR-AVALD--ALDGLTYPVVVKPRMGSG---SVGVRLCAS 163 (887)
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEeCCH-HHHHH--HHHhCCCCEEEEeCCCCC---CCCeEEECC
Confidence 5679999999999999999875 8999999988532 11212 124689999999988544 578999999
Q ss_pred ccccccC--------CCCeEEEecccCCCeEEEEEEE--CCEEEE--EEEecCCCCccccccccceeeeecccccccccC
Q 021495 184 RFSLSEL--------EPPMLLQEFVNHGGILFKIYII--GETIKV--VRRFSLPNVSKRELAKVVSVFRFPRVSSAAASA 251 (311)
Q Consensus 184 ~~~L~~l--------~~P~vvQEfInH~G~~~KVyVV--Gd~v~~--~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a 251 (311)
.++|.+. ..++++||||. |..|-|-++ ++.+.+ +.++.... . . .|- ..
T Consensus 164 ~~el~~a~~~~~~~~~~~~lvEEfI~--G~E~sVe~i~~~g~~~i~~i~~k~~~~-~--~------~~v----e~----- 223 (887)
T PRK02186 164 VAEAAAHCAALRRAGTRAALVQAYVE--GDEYSVETLTVARGHQVLGITRKHLGP-P--P------HFV----EI----- 223 (887)
T ss_pred HHHHHHHHHHHHhcCCCcEEEeeccc--CCcEEEEEEEECCcEEEEEEEeeecCC-C--C------CeE----Ee-----
Confidence 9887542 56899999995 677776555 343332 34432210 0 0 000 00
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCeEEEEEecCCC
Q 021495 252 DDADLDPGIAELPPRPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDINYFP 308 (311)
Q Consensus 252 ~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~--lfG~Dvi~~~~tg~~~~ViDVNyfP 308 (311)
+...|....-+..+.+.+++.++.++||+. .+++|+++++ . .++|||||.=+
T Consensus 224 --g~~~P~~l~~~~~~~l~~~~~~~l~aLG~~~G~~hvE~~~t~-~--g~~liEIn~R~ 277 (887)
T PRK02186 224 --GHDFPAPLSAPQRERIVRTVLRALDAVGYAFGPAHTELRVRG-D--TVVIIEINPRL 277 (887)
T ss_pred --ccccCCCCCHHHHHHHHHHHHHHHHHcCCCcCceEEEEEEEC-C--CEEEEEECCCC
Confidence 000111100112467889999999999994 5789999974 2 48999999844
No 43
>PLN02735 carbamoyl-phosphate synthase
Probab=99.44 E-value=4.3e-12 Score=138.41 Aligned_cols=262 Identities=13% Similarity=0.161 Sum_probs=158.1
Q ss_pred hhhhhhccCCCCCccEEEEEEeCch------hhhccchhHHHHHHHhCCCeEEEeeCCCCCC------------------
Q 021495 14 EDEEEKQSGVLQPERLVVGYALTSK------KKKSFLQPKLEILARNKGISFVAIDQNRPLS------------------ 69 (311)
Q Consensus 14 ~~~~~~~~~~~~~~~~~Vgy~~~~k------K~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~------------------ 69 (311)
++|+++.+.+.......|....+-- =+-++.-..+++.+++.|++++.+|.+-...
T Consensus 9 ~~~~~~~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e 88 (1102)
T PLN02735 9 RAWSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPE 88 (1102)
T ss_pred ecccccccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHH
Confidence 3666666555433333343333321 1222333457889999999999999864210
Q ss_pred ------CCCCccEEEEecCCh---hHHHHHH-HHHHhCCCeee-eCchhHHHHhcCHHHHHHHHHhccccCCCCccccCc
Q 021495 70 ------DQGPFDVVLHKLSGM---EWCKIIE-DYRQKHPEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPR 138 (311)
Q Consensus 70 ------~qgp~DviLhK~t~~---~~~~~l~-~y~~~hP~v~V-iDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~ 138 (311)
.+..+|.|+-=+-++ .....+. +..-+.-++++ -.++++++.+.||..+-+.+.++ +|++|+
T Consensus 89 ~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~ 161 (1102)
T PLN02735 89 LVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKI-------GLKTPP 161 (1102)
T ss_pred HHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCC
Confidence 123456666543222 1111222 12212345554 46889999999999999988875 899999
Q ss_pred EEEEccCCCCcchhhHhcCCC-CcEEEeeCcCCCCCcceeeEEEcCccccccC---------CCCeEEEecccCCCeEEE
Q 021495 139 QMVITKDSLSIPDQVFEAGLK-LPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFK 208 (311)
Q Consensus 139 ~~~i~~~~~~~~~~l~~~~l~-fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l---------~~P~vvQEfInH~G~~~K 208 (311)
+..+.+.. +..+ ....++ ||+|+||..+.| |.++.+|.|+++|... ..++++||||. +.+.|-
T Consensus 162 ~~~v~s~e-ea~~--~~~~iG~yPvVVKP~~~~G---G~Gv~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~-G~kE~e 234 (1102)
T PLN02735 162 SGIATTLD-ECFE--IAEDIGEFPLIIRPAFTLG---GTGGGIAYNKEEFETICKAGLAASITSQVLVEKSLL-GWKEYE 234 (1102)
T ss_pred eeEeCCHH-HHHH--HHHHhCCCCEEEEeCCCCC---CCceEEECCHHHHHHHHHHHHhcCCCCeEEEEEecC-CCeEEE
Confidence 98885322 1111 234576 999999988444 4578899999988652 45799999995 237999
Q ss_pred EEEECCE---EEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCC-
Q 021495 209 IYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGL- 282 (311)
Q Consensus 209 VyVVGd~---v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL- 282 (311)
|-|++|. +..+ .+.-++......+.+.. . .-|. ..+++ ...++++|.++.++||+
T Consensus 235 v~Vl~D~~g~~i~v--~~ie~~dp~gvh~G~s~------~----------vaPa-~tL~~~~~q~l~~~A~ki~~aLgi~ 295 (1102)
T PLN02735 235 LEVMRDLADNVVII--CSIENIDPMGVHTGDSI------T----------VAPA-QTLTDKEYQRLRDYSVAIIREIGVE 295 (1102)
T ss_pred EEEEEcCCCCEEEE--eeEEEEcCCccccCCEE------E----------EEeC-CCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 9999862 2211 11111110000000000 0 0010 01221 45789999999999999
Q ss_pred -cEeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 283 -RLFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 283 -~lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
..+++|++++..+| ++||||||.=+|
T Consensus 296 ~G~~nVqf~l~~~~g-~~~ViEVNPR~s 322 (1102)
T PLN02735 296 CGGSNVQFAVNPVDG-EVMIIEMNPRVS 322 (1102)
T ss_pred cCceEEEEEEECCCC-cEEEEEecCCCC
Confidence 47789999985345 799999996544
No 44
>PLN02735 carbamoyl-phosphate synthase
Probab=99.43 E-value=8.7e-12 Score=136.07 Aligned_cols=227 Identities=16% Similarity=0.257 Sum_probs=146.8
Q ss_pred HHHHHHhCCCeEEEeeCCCCCCC--C----------------------CCccEEEEecCCh---hHHHHHHHHHHhCC--
Q 021495 48 LEILARNKGISFVAIDQNRPLSD--Q----------------------GPFDVVLHKLSGM---EWCKIIEDYRQKHP-- 98 (311)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl~~--q----------------------gp~DviLhK~t~~---~~~~~l~~y~~~hP-- 98 (311)
.+..+++.|+..+.+|-+-.... . ...|.|+--.-++ .....+.+++.+++
T Consensus 600 ~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~f 679 (1102)
T PLN02735 600 ASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPP 679 (1102)
T ss_pred HHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccch
Confidence 67889999999999988643321 1 1133333222221 12344555555543
Q ss_pred ------Ce-eeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCC
Q 021495 99 ------EV-TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDG 171 (311)
Q Consensus 99 ------~v-~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~G 171 (311)
++ ++--++++++.+.||..+-+.+.++ +|++|++..+.+. ++..+ ....++||+|+||..+.|
T Consensus 680 a~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~-------GIp~p~~~~v~s~-eea~~--~a~~iGyPvvVKP~~g~g 749 (1102)
T PLN02735 680 SASGNGNVKIWGTSPDSIDAAEDRERFNAILNEL-------KIEQPKGGIARSE-ADALA--IAKRIGYPVVVRPSYVLG 749 (1102)
T ss_pred hhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEeCCH-HHHHH--HHHhcCCCeEEEeCCCCC
Confidence 43 4467899999999999999999875 8999999887532 21111 235789999999988433
Q ss_pred CCcceeeEEEcCccccccC---------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEEecCCCCcccccccccee
Q 021495 172 SAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET---IKV-VRRFSLPNVSKRELAKVVSV 238 (311)
Q Consensus 172 S~~sh~m~lv~~~~~L~~l---------~~P~vvQEfInH~G~~~KVyVVGd~---v~~-~~R~Slpn~~~~~~~~~~~~ 238 (311)
|.+|.+|+|+++|... +.|+++|+||. +|+.+-|-+++|. +.+ ..+.-.. ..+.
T Consensus 750 ---G~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~-~g~Ei~V~vl~D~~G~vv~~~i~e~~~---------~~gv 816 (1102)
T PLN02735 750 ---GRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLS-DATEIDVDALADSEGNVVIGGIMEHIE---------QAGV 816 (1102)
T ss_pred ---CCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecC-CcEEEEEEEEECCCCCEEEecceEeee---------ccCc
Confidence 5789999999988652 35899999996 4899999999862 322 1111000 0000
Q ss_pred eeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 239 FRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 239 ~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~lf-G~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
....+. ..-|. ..+++ .+.++++|.++.++||+.-+ ++|++++. .| ++||+|||.-||.
T Consensus 817 hsGds~----------~~~P~-~~L~~e~~~~i~~~a~ki~~~L~~~G~~~vqf~v~~-dg-~~yviEiNpR~s~ 878 (1102)
T PLN02735 817 HSGDSA----------CSLPT-QTIPSSCLATIRDWTTKLAKRLNVCGLMNCQYAITP-SG-EVYIIEANPRASR 878 (1102)
T ss_pred cCCCcc----------EEecC-CCCCHHHHHHHHHHHHHHHHHcCCcceeeEEEEEcC-CC-cEEEEEEeCCCCc
Confidence 000000 00010 01221 46688999999999998755 49999964 24 6899999999874
No 45
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.43 E-value=8.8e-12 Score=121.72 Aligned_cols=214 Identities=14% Similarity=0.176 Sum_probs=131.7
Q ss_pred hHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHHh
Q 021495 46 PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVAD 124 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~ 124 (311)
..+.++|++.+++++-+..+.++. ..+.+.+++ -+++++ -++++++.+.||..+-+.|++
T Consensus 17 ~~l~~~~~~~~id~vi~g~E~~l~------------------~~~~d~l~~-~Gi~~~g~s~~a~~l~~dK~~~k~~l~~ 77 (379)
T PRK13790 17 QAILDFAKQQNVDWVVIGPEQPLI------------------DGLADILRA-NGFKVFGPNKQAAQIEGSKLFAKKIMEK 77 (379)
T ss_pred HHHHHHHHHhCCCEEEECCcHHHH------------------HHHHHHHHh-CCCcEECCCHHHHHHhCCHHHHHHHHHH
Confidence 458889999999888876654322 234444443 467776 555999999999999999987
Q ss_pred ccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-----C----CCCeE
Q 021495 125 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-----L----EPPML 195 (311)
Q Consensus 125 l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-----l----~~P~v 195 (311)
+ +|++|++..+.+. ++..+. ...++||+|+||.. |+ +|.++.++.|.++|.+ + ..+++
T Consensus 78 ~-------gIptp~~~~~~~~-~ea~~~--~~~~g~PvVvKp~~--~~-~gkGV~iv~~~~el~~a~~~~~~~~~~~~vl 144 (379)
T PRK13790 78 Y-------NIPTADYKEVERK-KDALTY--IENCELPVVVKKDG--LA-AGKGVIIADTIEAARSAIEIMYGDEEEGTVV 144 (379)
T ss_pred C-------CCCCCCEEEECCH-HHHHHH--HHhcCCCEEEEeCC--CC-CCCCEEEECCHHHHHHHHHHHHhcCCCCeEE
Confidence 5 8999999887532 222221 24689999999985 43 4789999999988753 1 34799
Q ss_pred EEecccCCCeEEEEEEE--CCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHH-HH
Q 021495 196 LQEFVNHGGILFKIYII--GETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPL-LE 270 (311)
Q Consensus 196 vQEfInH~G~~~KVyVV--Gd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~-~~ 270 (311)
+||||. |..+-|.++ |+.+.. ++-+.. + ....|+.+.-.+.+ ......|.. .+++ .+. .+
T Consensus 145 vEe~i~--G~E~sv~~~~~g~~~~~-----~~~~~~-~---~kr~~~~d~g~~tg---g~~~~~p~~-~l~~~~~~~~~~ 209 (379)
T PRK13790 145 FETFLE--GEEFSLMTFVNGDLAVP-----FDCIAQ-D---HKRAFDHDEGPNTG---GMGAYCPVP-HISDDVLKLTNE 209 (379)
T ss_pred EEEccc--CceEEEEEEeeCCEEEe-----cccccc-c---ccccccCCCCCcCC---CCceEeeCC-CCCHHHHHHHHH
Confidence 999995 677777666 443221 100000 0 00011111100000 000011110 1111 122 37
Q ss_pred HHHHHHHHHh---CCcEeE---EEEEEeCCCCCeEEEEEecCCCC
Q 021495 271 RLARELRHRL---GLRLFN---IDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 271 ~lA~~l~~~L---GL~lfG---~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
+++..+.++| |+.++| +|++++. .| ++|+|+|.-||
T Consensus 210 ~i~~~~~~aL~~~g~~~~Gvl~~e~~lt~-~g--~~viEiN~R~G 251 (379)
T PRK13790 210 TIAQPIAKAMLNEGYQFFGVLYIGAILTK-DG--PKVIEFNARFG 251 (379)
T ss_pred HHHHHHHHHHHHcCCCceeEEEEEEEEeC-CC--eEEEEEEcccC
Confidence 7888888888 667666 6999964 34 89999999776
No 46
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=99.42 E-value=2.5e-12 Score=131.19 Aligned_cols=246 Identities=22% Similarity=0.298 Sum_probs=165.6
Q ss_pred CccEEEEEEeCchhhhccch-hHHHHHHHhCCCeEEE----eeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCe
Q 021495 26 PERLVVGYALTSKKKKSFLQ-PKLEILARNKGISFVA----IDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEV 100 (311)
Q Consensus 26 ~~~~~Vgy~~~~kK~~~~~~-~~l~~~~~~~gi~~v~----iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v 100 (311)
....+||.|.-+||.+|==- .-|-+++.-.=|+.|- +-++.|.+.+.-.||.|-=.+.---....++|.+... =
T Consensus 38 ~r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLRn-P 116 (1018)
T KOG1057|consen 38 ERQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLRN-P 116 (1018)
T ss_pred ccceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhcC-C
Confidence 34569999999998655322 1233344333333332 3466788888888998755554333566788887643 3
Q ss_pred eeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCC-cchh---------hHhcCCCCcEEEeeCcCC
Q 021495 101 TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLS-IPDQ---------VFEAGLKLPLVAKPLVVD 170 (311)
Q Consensus 101 ~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~-~~~~---------l~~~~l~fP~VvKP~~a~ 170 (311)
.|||-+.-...++||...|+.|+. .+|++|++..++.+... .... +...-+.-|+|-||+.|
T Consensus 117 FviNdL~mQyll~DRR~Vy~iLe~-------~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs~- 188 (1018)
T KOG1057|consen 117 FVINDLDMQYLLQDRREVYSILEA-------EGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVSA- 188 (1018)
T ss_pred eeeccccHHHHHHHHHHHHHHHHH-------cCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCCc-
Confidence 567889999999999999999987 48999998888644221 1111 12234566999999873
Q ss_pred CCCcceeeEEEcCcc---cc----ccC---------------CCCeEEEecccCCCeEEEEEEECCEEEEE-EEecCCCC
Q 021495 171 GSAKSHELFLAYDRF---SL----SEL---------------EPPMLLQEFVNHGGILFKIYIIGETIKVV-RRFSLPNV 227 (311)
Q Consensus 171 GS~~sh~m~lv~~~~---~L----~~l---------------~~P~vvQEfInH~G~~~KVyVVGd~v~~~-~R~Slpn~ 227 (311)
+-|.++|-|--. |- +++ ...++.+||.+.+|.+.|||.||..+..+ .|+| |-+
T Consensus 189 ---EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaHAEaRKS-Pvv 264 (1018)
T KOG1057|consen 189 ---EDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAHAEARKS-PVV 264 (1018)
T ss_pred ---ccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhhhhhccC-ccc
Confidence 379999988652 21 211 23599999999999999999999988765 7888 432
Q ss_pred ccccccccceeeeecccccccccCCCCCCC-CCCCCCCChHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecC
Q 021495 228 SKRELAKVVSVFRFPRVSSAAASADDADLD-PGIAELPPRPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 228 ~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~-p~~~~~p~~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNy 306 (311)
. +....+ .++.... | ..+ .+.-+.+|++++-+++-+..|||+++-+ | .-||||||.
T Consensus 265 D-GkV~Rn---------------s~GKEvRYp--v~L--s~~EK~iA~KVciAF~Q~VCGFDLLRa~--G-~SYVcDVNG 321 (1018)
T KOG1057|consen 265 D-GKVERN---------------SDGKEVRYP--VIL--NSSEKQIARKVCIAFKQTVCGFDLLRAN--G-KSYVCDVNG 321 (1018)
T ss_pred c-ceeeec---------------CCCceeece--eec--ChhhHHHHhHHHhhccccccchHHhhcC--C-ceEEEeccc
Confidence 1 111111 1111110 1 111 2334779999999999999999999976 4 458999998
Q ss_pred C
Q 021495 307 F 307 (311)
Q Consensus 307 f 307 (311)
|
T Consensus 322 f 322 (1018)
T KOG1057|consen 322 F 322 (1018)
T ss_pred e
Confidence 7
No 47
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.40 E-value=2.1e-11 Score=121.32 Aligned_cols=173 Identities=12% Similarity=0.187 Sum_probs=114.2
Q ss_pred CCeee-eCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCc
Q 021495 98 PEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 174 (311)
Q Consensus 98 P~v~V-iDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~--~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~ 174 (311)
-++++ -.++++++.+.||..+.+.+.++ +|++|++. .+. +.++..+ ....++||+|+||..++ +
T Consensus 98 ~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~-------gip~pp~~~~~~~-~~~e~~~--~~~~ig~PvvvKP~~g~---g 164 (449)
T TIGR00514 98 SGFTFIGPSAESIRLMGDKVSAIETMKKA-------GVPCVPGSDGLVE-DEEENVR--IAKRIGYPVIIKATAGG---G 164 (449)
T ss_pred CCCcEECcCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccCcC-CHHHHHH--HHHHhCCCEEEEeCCCC---C
Confidence 35654 47899999999999999999875 78888764 232 2221111 23468999999998844 3
Q ss_pred ceeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-EEe-cCCCCccccccccc
Q 021495 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVV-RRF-SLPNVSKRELAKVV 236 (311)
Q Consensus 175 sh~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~---v~~~-~R~-Slpn~~~~~~~~~~ 236 (311)
|.++.++.++++|.+. ..++++||||. +++.+-|-|++|. +... .+- +... . ..
T Consensus 165 s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~~~~~----~---~~ 236 (449)
T TIGR00514 165 GRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIE-NPRHVEIQVLADKYGNAIYLGERDCSIQR----R---HQ 236 (449)
T ss_pred CCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCC-CCeEEEEEEEEcCCCCEEEEeccccCcee----c---cc
Confidence 6889999999887542 35799999996 4688888888753 2221 110 0000 0 00
Q ss_pred eeeeecccccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCC
Q 021495 237 SVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 237 ~~~~~~~vs~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
..+. . .|. ..++ ..+.++++|.++.++||+.-.+ +|++++. +| .+||+|||.=+|
T Consensus 237 ~~~~---------~------~p~-~~l~~~~~~~i~~~a~~~~~~lg~~G~~~vef~~~~-~g-~~~viEiNpR~~ 294 (449)
T TIGR00514 237 KLLE---------E------APS-PALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDK-NG-EFYFMEMNTRIQ 294 (449)
T ss_pred ceEE---------E------CCC-CCCCHHHHHHHHHHHHHHHHHCCCcceEEEEEEEeC-CC-CEEEEEEECCCC
Confidence 0000 0 010 0122 1467889999999999998665 9999984 34 589999997654
No 48
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.40 E-value=3.3e-11 Score=121.81 Aligned_cols=173 Identities=12% Similarity=0.183 Sum_probs=117.6
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcc
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i-~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~s 175 (311)
-+++++ .++++++.+.||..+-+.+.++ +|++|++... -.+.++..+ ....++||+|+||..++ +|
T Consensus 98 ~gi~~iGps~~~i~~~~DK~~~k~~l~~~-------GVpv~p~~~~~v~~~~e~~~--~a~~igyPvvIKp~~Gg---GG 165 (499)
T PRK08654 98 AGIVFIGPSSDVIEAMGSKINAKKLMKKA-------GVPVLPGTEEGIEDIEEAKE--IAEEIGYPVIIKASAGG---GG 165 (499)
T ss_pred CCCcEECCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCCcCcCCCCHHHHHH--HHHHhCCCEEEEeCCCC---CC
Confidence 367665 5689999999999999999875 7888776542 112221212 23578999999998744 46
Q ss_pred eeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEEe-cCCCCccccccccce
Q 021495 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKVVS 237 (311)
Q Consensus 176 h~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~----v~~~~R~-Slpn~~~~~~~~~~~ 237 (311)
.+|.++.++++|.+. +.++++|+||. +++.+.|-|+||. +....|. |...- ...
T Consensus 166 ~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~-~~r~ieVqvl~d~~G~vv~l~~recsiqrr-------~qk 237 (499)
T PRK08654 166 IGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLE-KPRHIEIQILADKHGNVIHLGDRECSIQRR-------HQK 237 (499)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCC-CCcEEEEEEEEcCCCCEEEEeeeccccccC-------ccc
Confidence 899999999988542 35799999997 4788999999875 2233332 22100 000
Q ss_pred eeeecccccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCC
Q 021495 238 VFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 238 ~~~~~~vs~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
... ..|.+ .++ ..+.+.++|.++.+++|+.-.| ||++.++ | ++|++|||.=++
T Consensus 238 ~ie---------------~~Pa~-~l~~~~~~~l~~~A~~l~~algy~g~gtVEfl~~~--g-~~yflEiNpRlq 293 (499)
T PRK08654 238 LIE---------------EAPSP-IMTPELRERMGEAAVKAAKAINYENAGTVEFLYSN--G-NFYFLEMNTRLQ 293 (499)
T ss_pred eEE---------------ECCCC-CCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEEC--C-cEEEEEEECCCC
Confidence 000 00110 011 1467899999999999999887 9999963 3 699999997654
No 49
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.39 E-value=2.6e-11 Score=132.23 Aligned_cols=225 Identities=19% Similarity=0.321 Sum_probs=141.6
Q ss_pred HHHHHHHhCCCeEEEeeCCCCCCC------------------------CCCccEEEEecCChhHHHHHHHHHHhCCCeee
Q 021495 47 KLEILARNKGISFVAIDQNRPLSD------------------------QGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTI 102 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~------------------------qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~V 102 (311)
..++.+++.|++.+.+|-+-.... ...+|.|+--..++ ....+..-+++ .++.+
T Consensus 580 ~~~~aLk~~G~~vI~vn~npetvs~~~~~aD~~y~ep~~~e~vl~I~~~e~~dgVI~~~g~~-~~~~la~~le~-~Gi~i 657 (1068)
T PRK12815 580 HAAFALKKEGYETIMINNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIKGVIVQFGGQ-TAINLAKGLEE-AGLTI 657 (1068)
T ss_pred HHHHHHHHcCCEEEEEeCCccccccccccCceEEEccCCHHHHHHHHhhcCCCEEEEecCcH-HHHHHHHHHHH-CCCeE
Confidence 357888999999999987742111 01123332222121 11223333333 46765
Q ss_pred e-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEE
Q 021495 103 L-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLA 181 (311)
Q Consensus 103 i-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv 181 (311)
+ .++++++.+.||..+.+.|.++ +|++|++..+.+. ++..+ ....++||+|+||..+. +|.+|.++
T Consensus 658 lG~s~e~i~~~~DK~~f~~ll~~~-------GIp~P~~~~~~s~-ee~~~--~~~~igyPvVVKP~~~~---Gg~gv~iv 724 (1068)
T PRK12815 658 LGTSPDTIDRLEDRDRFYQLLDEL-------GLPHVPGLTATDE-EEAFA--FAKRIGYPVLIRPSYVI---GGQGMAVV 724 (1068)
T ss_pred ECCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCeEEeCCH-HHHHH--HHHhcCCCEEEEeCCCC---CCCCEEEE
Confidence 4 6799999999999999999886 8999999988532 21211 23578999999998744 46889999
Q ss_pred cCccccccC-------CCCeEEEecccCCCeEEEEEEECCE--EEEEEEecCCCCccccccccceeeeecccccccccCC
Q 021495 182 YDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGET--IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASAD 252 (311)
Q Consensus 182 ~~~~~L~~l-------~~P~vvQEfInH~G~~~KVyVVGd~--v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~ 252 (311)
+++++|.++ ..|+++|||| .|..+-|.++.|. +.+. .+ .+.....+...-++
T Consensus 725 ~~~eeL~~~l~~~~s~~~~vlIeefI--~G~E~~Vd~i~dg~~v~i~------~i--~e~~e~~gv~sGds--------- 785 (1068)
T PRK12815 725 YDEPALEAYLAENASQLYPILIDQFI--DGKEYEVDAISDGEDVTIP------GI--IEHIEQAGVHSGDS--------- 785 (1068)
T ss_pred CCHHHHHHHHHHhhcCCCCEEEEEee--cCceEEEEEEEcCCceEEe------eE--EEEeeccCCcCCCe---------
Confidence 999988652 5789999999 5778888877553 2221 00 00000001000000
Q ss_pred CCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 253 DADLDPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 253 ~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
...-| +..++ ..+.+++++.++.++||+. +++||+++++ + .+||||||.-+|.
T Consensus 786 -~~v~p-p~~l~~~~~~~i~~~a~ki~~~L~~~G~~niqf~v~~--~-~~yviEiNpR~s~ 841 (1068)
T PRK12815 786 -IAVLP-PQSLSEEQQEKIRDYAIKIAKKLGFRGIMNIQFVLAN--D-EIYVLEVNPRASR 841 (1068)
T ss_pred -eEEEC-CCCCCHHHHHHHHHHHHHHHHHcCCccEEEEEEEEEC--C-cEEEEEEeCCCCc
Confidence 00001 01122 2467899999999999977 5569999975 3 5899999988763
No 50
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.39 E-value=1.1e-11 Score=135.09 Aligned_cols=227 Identities=15% Similarity=0.227 Sum_probs=144.0
Q ss_pred HHHHHHHhCCCeEEEeeCCCCC-------C-----------------CCCCccEEEEecCChhH---HHHHH--HHHHhC
Q 021495 47 KLEILARNKGISFVAIDQNRPL-------S-----------------DQGPFDVVLHKLSGMEW---CKIIE--DYRQKH 97 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl-------~-----------------~qgp~DviLhK~t~~~~---~~~l~--~y~~~h 97 (311)
.+++.+++.|++++.+|.+-.. . .+..+|+|+-=+-++.. ...+. ..+++
T Consensus 32 ~~~~aLke~G~~vi~v~~~p~~~~~~~~~aD~~y~~p~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~~~~l~~~~~le~- 110 (1066)
T PRK05294 32 QACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEK- 110 (1066)
T ss_pred HHHHHHHHcCCEEEEEcCCcccccCCcccCCEEEECCCCHHHHHHHHHHHCcCEEEECCCCchhhhhhHHHHhhCHHHH-
Confidence 3677888999999999876421 0 12235555544332211 11121 12222
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcce
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh 176 (311)
-++.++ -++++++.+.||..+.+.+.++ +|++|++..+++. ++..+ ....++||+|+||..+. +|.
T Consensus 111 ~Gv~~~g~~~~~i~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s~-~e~~~--~~~~ig~PvVVKP~~g~---gg~ 177 (1066)
T PRK05294 111 YGVELIGAKLEAIDKAEDRELFKEAMKKI-------GLPVPRSGIAHSM-EEALE--VAEEIGYPVIIRPSFTL---GGT 177 (1066)
T ss_pred CCCEEECCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeeeeCCH-HHHHH--HHHHcCCCeEEEcCCCC---CCC
Confidence 356665 5789999999999999999875 8999999998532 22222 23578999999998633 467
Q ss_pred eeEEEcCccccccC---------CCCeEEEecccCCC-eEEEEEEECCE---EEEEEEecCCCCccccccccceeeeecc
Q 021495 177 ELFLAYDRFSLSEL---------EPPMLLQEFVNHGG-ILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPR 243 (311)
Q Consensus 177 ~m~lv~~~~~L~~l---------~~P~vvQEfInH~G-~~~KVyVVGd~---v~~~~R~Slpn~~~~~~~~~~~~~~~~~ 243 (311)
++.++.++++|.+. ..++++||||+ | +.+-+-|+.|. +..+ .+..|+......+. +..
T Consensus 178 Gv~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~--G~~Eisv~v~rd~~g~~~~~--~~~e~~dp~gih~g-~~~---- 248 (1066)
T PRK05294 178 GGGIAYNEEELEEIVERGLDLSPVTEVLIEESLL--GWKEYEYEVMRDKNDNCIIV--CSIENIDPMGVHTG-DSI---- 248 (1066)
T ss_pred CeEEECCHHHHHHHHHHHHhhCCCCeEEEEEccc--CceEEEEEEEEcCCCCEEEE--eeeeeccccceecC-CeE----
Confidence 89999999988642 24799999995 5 68888887552 2221 11122211110000 000
Q ss_pred cccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCc--EeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 244 VSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLR--LFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 244 vs~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~--lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
..-|.. .++ ..+.++++|.++.++||+. .++||+.++..+| ++||+|||.=++
T Consensus 249 -----------~~~Pa~-~l~~~~~~~l~~~a~ki~~aLg~~~G~~~vef~~~~~~g-~~~viEiNPR~~ 305 (1066)
T PRK05294 249 -----------TVAPAQ-TLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDG-RYIVIEMNPRVS 305 (1066)
T ss_pred -----------EEeCCC-CCCHHHHHHHHHHHHHHHHHcCCccCceEEEEEEECCCC-cEEEEEeecCCC
Confidence 000110 122 2456899999999999998 6789999985445 799999996554
No 51
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.38 E-value=2e-11 Score=133.02 Aligned_cols=229 Identities=16% Similarity=0.224 Sum_probs=145.4
Q ss_pred HHHHHHHhCCCeEEEeeCCCCCC------------------------CCCCccEEEEecCChh--HH-HHHH-HHHHhCC
Q 021495 47 KLEILARNKGISFVAIDQNRPLS------------------------DQGPFDVVLHKLSGME--WC-KIIE-DYRQKHP 98 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~------------------------~qgp~DviLhK~t~~~--~~-~~l~-~y~~~hP 98 (311)
.+++.+++.|++.+.+|.+-... .+..+|.|+-=+-++. +. ..+. +..-+.-
T Consensus 31 q~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~ 110 (1050)
T TIGR01369 31 QACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKY 110 (1050)
T ss_pred HHHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHC
Confidence 47888999999999999875210 1234566654322211 11 1111 1122334
Q ss_pred Ceeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCccee
Q 021495 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHE 177 (311)
Q Consensus 99 ~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~ 177 (311)
++.++ .++++++.+.||..+.+.|.++ ++++|++..+.+.. +..+ ....++||+|+||..+. +|.+
T Consensus 111 Gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s~~-e~~~--~~~~igyPvIVKP~~g~---gg~G 177 (1050)
T TIGR01369 111 GVEVLGTPVEAIKKAEDRELFREAMKEI-------GEPVPESEIAHSVE-EALA--AAKEIGYPVIVRPAFTL---GGTG 177 (1050)
T ss_pred CCEEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCeeecCCHH-HHHH--HHHHhCCCeEEECCCCC---CCCC
Confidence 67665 7799999999999999999875 89999998885322 1211 23468999999998733 4678
Q ss_pred eEEEcCccccccC-----C----CCeEEEecccCCCeEEEEEEECCE---EEEEEEecCCCCccccccccceeeeecccc
Q 021495 178 LFLAYDRFSLSEL-----E----PPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRVS 245 (311)
Q Consensus 178 m~lv~~~~~L~~l-----~----~P~vvQEfInH~G~~~KVyVVGd~---v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs 245 (311)
+.++.|+++|.+. . .++++||||+ +.+.+-+-|++|. +.++ .+..|+.+....+.+. +.
T Consensus 178 v~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~-G~~Eiev~v~rd~~g~~~~~--~~~e~~~p~gvh~g~~------i~ 248 (1050)
T TIGR01369 178 GGIAYNREELKEIAERALSASPINQVLVEKSLA-GWKEIEYEVMRDSNDNCITV--CNMENFDPMGVHTGDS------IV 248 (1050)
T ss_pred eEEECCHHHHHHHHHHHHhcCCCCcEEEEEccc-CceEEEEEEEEeCCCCEEEE--eeceeccCcceecCce------EE
Confidence 9999999988652 1 5799999995 2368888887652 2211 2222221111000000 00
Q ss_pred cccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEEecCCCC
Q 021495 246 SAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 246 ~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~lf-G~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
.-|.. .++ ..+.++++|.++.++||+.-. ++|++++.++| ++||+|||.-++
T Consensus 249 ----------v~Pa~-tl~~~~~~~l~~~a~~i~~~Lg~~G~~~Vef~l~~~~g-~~~viEiNPR~~ 303 (1050)
T TIGR01369 249 ----------VAPSQ-TLTDKEYQMLRDASIKIIRELGIEGGCNVQFALNPDSG-RYYVIEVNPRVS 303 (1050)
T ss_pred ----------EecCC-CCCHHHHHHHHHHHHHHHHHcCCcceeEEEEEEECCCC-cEEEEEeecCcC
Confidence 00110 011 135689999999999999754 59999986444 799999997665
No 52
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.37 E-value=4e-11 Score=119.08 Aligned_cols=175 Identities=14% Similarity=0.195 Sum_probs=114.5
Q ss_pred CCeee-eCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEE--EEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCc
Q 021495 98 PEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQM--VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 174 (311)
Q Consensus 98 P~v~V-iDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~--~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~ 174 (311)
-++++ -.++++++.+.||..|.+.+.++ +|++|++. .+. +.++..+ ....++||+|+||..++ +
T Consensus 98 ~gi~~~g~~~~~~~~~~DK~~~r~~l~~~-------gIp~pp~~~~~v~-~~~~~~~--~~~~~g~PvvvKP~~g~---g 164 (451)
T PRK08591 98 SGFTFIGPSAETIRLMGDKVTAKATMKKA-------GVPVVPGSDGPVD-DEEEALA--IAKEIGYPVIIKATAGG---G 164 (451)
T ss_pred CCCceECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHH--HHHHcCCCEEEEECCCC---C
Confidence 45654 47899999999999999999875 78888763 332 2211112 23578999999998843 4
Q ss_pred ceeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-EEe-cCCCCccccccccc
Q 021495 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVV-RRF-SLPNVSKRELAKVV 236 (311)
Q Consensus 175 sh~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~---v~~~-~R~-Slpn~~~~~~~~~~ 236 (311)
|.++.++.++++|.+. .+.+++||||. +++.+-|-|++|. +... .|- +.. . ...
T Consensus 165 s~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~-g~~e~~v~v~~d~~g~~~~~~~~~~~~~-----~--~~~ 236 (451)
T PRK08591 165 GRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLE-NPRHIEIQVLADGHGNAIHLGERDCSLQ-----R--RHQ 236 (451)
T ss_pred CceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC-CCcEEEEEEEEcCCCCEEEEecccccce-----e--cce
Confidence 6889999999888542 35699999996 4678888888653 2221 110 000 0 000
Q ss_pred eeeeecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCC
Q 021495 237 SVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 237 ~~~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
..+ ....+ ..++ ....+.+.++|.++.++||+.-.+ +|++++. +| ++||+|||.=+|
T Consensus 237 ~~~-----~~~p~----~~l~-----~~~~~~l~~~a~~~~~~lg~~G~~~vEf~~~~-~g-~~~viEINpR~~ 294 (451)
T PRK08591 237 KVL-----EEAPS----PAIT-----EELRRKIGEAAVKAAKAIGYRGAGTIEFLYEK-NG-EFYFIEMNTRIQ 294 (451)
T ss_pred eEE-----EECCC----CCCC-----HHHHHHHHHHHHHHHHHcCCCceEEEEEEEcC-CC-CEEEEEEECCCC
Confidence 000 00000 0011 112567899999999999998665 9999985 34 699999997664
No 53
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.35 E-value=4.6e-11 Score=130.36 Aligned_cols=174 Identities=11% Similarity=0.179 Sum_probs=117.5
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcc
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i-~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~s 175 (311)
.+++++ .++++++.+.||..+.+.+.++ +|++|++... -.+.++..+ ....++||+|+||..++ +|
T Consensus 98 ~Gi~fiGps~e~i~~~~DK~~ar~la~~~-------GVPvpp~t~~~v~~~eea~~--~ae~iGyPvIVKP~~GG---GG 165 (1143)
T TIGR01235 98 AGIIFIGPKAEVMDQLGDKVAARNLAIKA-------GVPVVPGTDGPPETMEEVLD--FAAAIGYPVIIKASWGG---GG 165 (1143)
T ss_pred cCCcccCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccCcCCHHHHHH--HHHHcCCCEEEEECCCC---CC
Confidence 366655 5589999999999999988875 7888876421 112111112 23578999999998744 36
Q ss_pred eeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEEe-cCCCCccccccccce
Q 021495 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKVVS 237 (311)
Q Consensus 176 h~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~----v~~~~R~-Slpn~~~~~~~~~~~ 237 (311)
++|.+|.++++|.+. +.++++|+||+ +++.+.|-|+||. ++...|- |...
T Consensus 166 rG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~-g~reIeVqVlgD~~G~vv~l~eRdcsvqr----------- 233 (1143)
T TIGR01235 166 RGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIE-RPRHIEVQLLGDKHGNVVHLFERDCSVQR----------- 233 (1143)
T ss_pred CccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCC-CCeEEEEEEEEeCCCCEEEEEeccccccc-----------
Confidence 889999999887542 35799999996 4789999999886 3333342 2211
Q ss_pred eeeecccccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCC
Q 021495 238 VFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 238 ~~~~~~vs~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
.++... .. .|.. .++ ..+.+.++|.++.++||+.-+| ||++++.+ | ++|++|||.=++
T Consensus 234 ---r~qk~i--e~------aPa~-~L~~e~r~~I~~~A~kla~aLgy~G~gtVEFlvd~d-g-~~yfIEVNPRiq 294 (1143)
T TIGR01235 234 ---RHQKVV--EV------APAP-YLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDND-G-KFYFIEVNPRIQ 294 (1143)
T ss_pred ---cCceEE--EE------eCCC-CCCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEeCC-C-cEEEEEeecCCC
Confidence 000000 00 0100 111 1467899999999999988776 99999853 4 699999997654
No 54
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.34 E-value=7.7e-11 Score=118.23 Aligned_cols=172 Identities=13% Similarity=0.194 Sum_probs=114.0
Q ss_pred Ceeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcce
Q 021495 99 EVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (311)
Q Consensus 99 ~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i-~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh 176 (311)
+++++ .++++++.+.||..+-+.+.++ +|++|++... -.+.++..+ ....++||+|+||..++ +|.
T Consensus 98 Gi~~igps~~~i~~~~DK~~~r~~l~~~-------GIp~pp~~~~~~~~~~e~~~--~~~~igyPvvvKp~~gg---Gg~ 165 (472)
T PRK07178 98 GIKFIGPSAEVIRRMGDKTEARRAMIKA-------GVPVTPGSEGNLADLDEALA--EAERIGYPVMLKATSGG---GGR 165 (472)
T ss_pred CCCccCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCCcCcCCCCHHHHHH--HHHHcCCcEEEEeCCCC---CCC
Confidence 66654 6689999999999999999875 7888776532 111111111 23578999999998844 468
Q ss_pred eeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE---EE-EEEEe-cCCCCcccccccccee
Q 021495 177 ELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IK-VVRRF-SLPNVSKRELAKVVSV 238 (311)
Q Consensus 177 ~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~---v~-~~~R~-Slpn~~~~~~~~~~~~ 238 (311)
+|.++.++++|.+. ..++++|+||. +++.+-|-|+||. +. +..|. |..
T Consensus 166 Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~-~~~eiev~v~~d~~G~~v~~~er~~s~~------------- 231 (472)
T PRK07178 166 GIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIV-NPKHIEVQILADSHGNVVHLFERDCSIQ------------- 231 (472)
T ss_pred CceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC-CCeEEEEEEEEECCCCEEEEEccccceE-------------
Confidence 99999999988641 35799999996 5888888888753 22 22221 100
Q ss_pred eeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCC
Q 021495 239 FRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFP 308 (311)
Q Consensus 239 ~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfP 308 (311)
..+... .. ..|. ..+++ .+.++++|.++.++||+.-.+ +|++++.+ | ++|++|||.=+
T Consensus 232 -~~~~~~--~e------~~P~-~~l~~~~~~~i~~~a~~~~~aLg~~g~~~vEf~~d~~-g-~~y~iEiNpRl 292 (472)
T PRK07178 232 -RRNQKL--IE------IAPS-PQLTPEQRAYIGDLAVRAAKAVGYENAGTVEFLLDAD-G-EVYFMEMNTRV 292 (472)
T ss_pred -ecCcce--EE------ECCC-CCCCHHHHHHHHHHHHHHHHHcCCCceeEEEEEEeCC-C-CEEEEEEeCCc
Confidence 000000 00 0010 01222 456889999999999997665 99999753 4 59999999754
No 55
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.34 E-value=1.2e-10 Score=117.08 Aligned_cols=174 Identities=13% Similarity=0.206 Sum_probs=115.2
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEE-Ec-cCCCCcchhhHhcCCCCcEEEeeCcCCCCCc
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV-IT-KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 174 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~-i~-~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~ 174 (311)
-+++++ .++++++.+.||..|.+.+.++ +|++|++.. +. .+.++..+ ....++||+|+||..++ +
T Consensus 97 ~Gi~~iGps~~~i~~~~DK~~~k~~l~~~-------gIpvpp~~~~~~~~~~~~~~~--~~~~igyPvvvKP~~gg---G 164 (478)
T PRK08463 97 AGIIFIGPKSEVIRKMGNKNIARYLMKKN-------GIPIVPGTEKLNSESMEEIKI--FARKIGYPVILKASGGG---G 164 (478)
T ss_pred CCCceecCCHHHHHhhCcHHHHHHHHHHc-------CCCCCCCccccCCCCHHHHHH--HHHHhCCCEEEEeCCCC---C
Confidence 367766 5689999999999999999875 788876433 22 11111111 23468999999998844 4
Q ss_pred ceeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE---EE-EEEEe-cCCCCccccccccc
Q 021495 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IK-VVRRF-SLPNVSKRELAKVV 236 (311)
Q Consensus 175 sh~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~---v~-~~~R~-Slpn~~~~~~~~~~ 236 (311)
|.+|.++.++++|... +.++++|+||+ +++.+-+-|+||. +. ...|- |... .+.
T Consensus 165 g~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~-~~~~iev~v~~d~~g~v~~~~er~~s~~~-------~~~ 236 (478)
T PRK08463 165 GRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVV-NPRHIEFQILGDNYGNIIHLCERDCSIQR-------RHQ 236 (478)
T ss_pred CCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCeEEEEEEEEcCCCCEEEEeccCCcccc-------ccC
Confidence 6889999999988541 35799999997 3677888888764 22 22232 1110 000
Q ss_pred eeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCC
Q 021495 237 SVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 237 ~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
... ...|.. .+++ .+.+.++|.++.++||+.-.| +|++++. +| ++||+|||.=+|
T Consensus 237 ~~i---------------e~~P~~-~l~~~~~~~i~~~a~~~~~alg~~g~~~vEf~~~~-~~-~~y~iEiN~R~~ 294 (478)
T PRK08463 237 KVI---------------EIAPCP-SISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDD-YN-RFYFMEMNTRIQ 294 (478)
T ss_pred ceE---------------EECCCC-CCCHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcC-CC-CEEEEEEECCcC
Confidence 000 001110 1121 456788999999999998777 9999985 34 699999996443
No 56
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.33 E-value=8.6e-11 Score=115.86 Aligned_cols=103 Identities=11% Similarity=0.087 Sum_probs=78.3
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcce
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh 176 (311)
.+++++ .++++++.+.||..|-+.|+++ +|++|++..+.+. ++..+ ....++||+|+||..+. +|.
T Consensus 85 ~gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~--~~~~~~~P~VvKP~~~~---gs~ 151 (420)
T PRK00885 85 AGLPIFGPTKAAAQLEGSKAFAKDFMARY-------GIPTAAYETFTDA-EEALA--YLDEKGAPIVVKADGLA---AGK 151 (420)
T ss_pred CCCcEECcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCeEEeCCH-HHHHH--HHHHcCCCEEEEeCCCC---CCC
Confidence 467766 5678999999999999999875 8999999888532 22222 12468999999998633 467
Q ss_pred eeEEEcCcccccc-------------CCCCeEEEecccCCCeEEEEEEECCE
Q 021495 177 ELFLAYDRFSLSE-------------LEPPMLLQEFVNHGGILFKIYIIGET 215 (311)
Q Consensus 177 ~m~lv~~~~~L~~-------------l~~P~vvQEfInH~G~~~KVyVVGd~ 215 (311)
++.++.++++|.+ ...++++||||+ |..|-|.++.+.
T Consensus 152 Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~~g 201 (420)
T PRK00885 152 GVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD--GEEASFFAFVDG 201 (420)
T ss_pred cEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC--CcEEEEEEEECC
Confidence 8999999987743 135799999995 799999888553
No 57
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.33 E-value=4.5e-11 Score=119.64 Aligned_cols=188 Identities=15% Similarity=0.168 Sum_probs=118.2
Q ss_pred HHHHHHhCCCeee-eCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccC-CCCcchhhHhcCCCCcEEEeeC
Q 021495 90 IEDYRQKHPEVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKD-SLSIPDQVFEAGLKLPLVAKPL 167 (311)
Q Consensus 90 l~~y~~~hP~v~V-iDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~-~~~~~~~l~~~~l~fP~VvKP~ 167 (311)
+|..++. -|+++ .=++.++..++||..+-+.++++ +|++|++..+..+ .+.+......+.++||+|+||.
T Consensus 118 iQ~lLE~-lGIpy~gP~a~asai~mDK~~tK~l~~~a-------GIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP~ 189 (493)
T PRK06524 118 TEALARQ-AGLEVMHPPAELRHRLDSKIVTTRLANEA-------GVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQTP 189 (493)
T ss_pred HHHHHHH-CCCeEECcCHHHHHHhCCHHHHHHHHHHc-------CCCCCCcccccCCCHHHHHHHHHhccCCCcEEEEEC
Confidence 4445544 36776 67788999999999998888764 8999999875322 1111111112359999999999
Q ss_pred cCCCCCcceeeEEEcCccccccC------CCCeEEEecccCCCeEEEE--EEECCE-EEEE-EEecCCCCccccccc-cc
Q 021495 168 VVDGSAKSHELFLAYDRFSLSEL------EPPMLLQEFVNHGGILFKI--YIIGET-IKVV-RRFSLPNVSKRELAK-VV 236 (311)
Q Consensus 168 ~a~GS~~sh~m~lv~~~~~L~~l------~~P~vvQEfInH~G~~~KV--yVVGd~-v~~~-~R~Slpn~~~~~~~~-~~ 236 (311)
. |+ .|+++.+|.++++|..+ ...+++|+||+ |+.+-| ++-++. +... .+..++.. ++.. ..
T Consensus 190 ~--GG-SS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~--GrEitVev~vd~dG~Vv~~~~~e~vg~~---Ei~~yr~ 261 (493)
T PRK06524 190 Y--GD-SGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIR--NVEVCIEACVTRHGTVIGPAMTSLVGYP---ELTPYRG 261 (493)
T ss_pred C--CC-CCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccC--cEEEEEEEEEeCCCCEEeccccccccce---EEEEccC
Confidence 6 44 38999999999988753 24689999995 788776 544442 2211 11112210 1110 00
Q ss_pred eeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHh---CC-cEeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 237 SVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRL---GL-RLFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 237 ~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~L---GL-~lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
+.+. ...+++.+++ .++++++|.++.++| |+ .++++|++++.++| ++|++|||.=||
T Consensus 262 G~~~---------------~~i~PA~L~~ei~eeIqeiA~ka~~aL~~lG~~Gv~rVDFfvd~ddg-evYfnEINPR~~ 324 (493)
T PRK06524 262 GWCG---------------NDIWPGALPPAQTRKAREMVRKLGDVLSREGYRGYFEVDLLHDLDAD-ELYLGEVNPRLS 324 (493)
T ss_pred CeEE---------------EEEccCCCCHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEEECCCC-eEEEEEEeCCcc
Confidence 1100 0001122332 467999999999999 44 34469999985344 699999997554
No 58
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.33 E-value=8.5e-11 Score=116.89 Aligned_cols=216 Identities=13% Similarity=0.126 Sum_probs=133.3
Q ss_pred hHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHHh
Q 021495 46 PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVAD 124 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~ 124 (311)
..+.++|++.+++++-+..+.|+ ...+.+.+++ -+++++ -+.++++.+.||..+-+.+.+
T Consensus 52 ~~l~~~a~~~~id~vvvg~E~~l------------------v~~~~d~l~~-~Gi~~~Gps~~aa~l~~dK~~~K~~l~~ 112 (434)
T PLN02257 52 AAVISFCRKWGVGLVVVGPEAPL------------------VAGLADDLVK-AGIPTFGPSAEAAALEGSKNFMKDLCDK 112 (434)
T ss_pred HHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHH-CCCCEECChHHHHHHHcCHHHHHHHHHH
Confidence 45888899988888776554332 2234444433 367765 667899999999999999987
Q ss_pred ccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-------------CC
Q 021495 125 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-------------LE 191 (311)
Q Consensus 125 l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-------------l~ 191 (311)
+ +|+||++..+.+ .++..+ ....++||+|+||.. |+ .|.++.++.+.+++.+ ..
T Consensus 113 ~-------GIptp~~~~~~~-~~e~~~--~~~~~g~PvVVKp~~--~~-~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~ 179 (434)
T PLN02257 113 Y-------KIPTAKYETFTD-PAAAKK--YIKEQGAPIVVKADG--LA-AGKGVVVAMTLEEAYEAVDSMLVKGAFGSAG 179 (434)
T ss_pred c-------CCCCCCeEEeCC-HHHHHH--HHHHcCCCEEEEcCC--CC-CCCCEEEECCHHHHHHHHHHHHhhhhccCCC
Confidence 5 899999988743 222222 124688999999985 33 4689999999987643 13
Q ss_pred CCeEEEecccCCCeEEEEEEECCE--EEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hH
Q 021495 192 PPMLLQEFVNHGGILFKIYIIGET--IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RP 267 (311)
Q Consensus 192 ~P~vvQEfInH~G~~~KVyVVGd~--v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~ 267 (311)
.++++||||. |.++-|.++.|. ++.. ..+ .....+|+++...+.+. .....|.+ .+++ .+
T Consensus 180 ~~vlIEefi~--G~E~Sv~~~~dG~~~~pl----~~~------~dhkr~~d~d~g~ntgg---mg~~sp~p-~l~~~~~~ 243 (434)
T PLN02257 180 SEVVVEEFLD--GEEASFFALVDGENAIPL----ESA------QDHKRVGDGDTGPNTGG---MGAYSPAP-VLTPELES 243 (434)
T ss_pred CeEEEEECCC--CCEEEEEEEECCCcEEEE----Eee------eecccccCCCCCCCCCC---CeeEecCC-CCCHHHHH
Confidence 5799999995 889999776442 2211 111 01112344444332210 11111211 1221 11
Q ss_pred H-HHHHHH---HHHHHhCCcEeE---EEEEEeCCCCCeEEEEEecCCCCC
Q 021495 268 L-LERLAR---ELRHRLGLRLFN---IDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 268 ~-~~~lA~---~l~~~LGL~lfG---~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
+ .+++++ +..++.|+.+.| +|++++...| .++|+|+|.-||.
T Consensus 244 ~i~~~i~~~~~~al~~~g~~y~Gvl~ve~ml~~~~g-~p~vLE~N~R~Gd 292 (434)
T PLN02257 244 KVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSG-LPKLLEYNVRFGD 292 (434)
T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEEEEEEEEcCCC-CEEEEEEECCCCC
Confidence 1 233333 333578888776 8999872234 5899999999995
No 59
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.31 E-value=2.2e-10 Score=113.56 Aligned_cols=177 Identities=14% Similarity=0.201 Sum_probs=111.7
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEE-ccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcc
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVI-TKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i-~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~s 175 (311)
-+++++ .++++++.+.||..|.+.+.++ +|++|++... ..+.++..+ ....++||+|+||..++ +|
T Consensus 98 ~g~~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~~~~~~e~~~--~~~~~~~P~VvKP~~g~---gs 165 (450)
T PRK06111 98 EGIVFIGPSADIIAKMGSKIEARRAMQAA-------GVPVVPGITTNLEDAEEAIA--IARQIGYPVMLKASAGG---GG 165 (450)
T ss_pred CCCeEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcCcCcCCHHHHHH--HHHHhCCCEEEEeCCCC---CC
Confidence 356654 5689999999999999999885 7888886322 122221211 23468999999998744 46
Q ss_pred eeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-EEecCCCCcccccccccee
Q 021495 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVV-RRFSLPNVSKRELAKVVSV 238 (311)
Q Consensus 176 h~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~---v~~~-~R~Slpn~~~~~~~~~~~~ 238 (311)
+++.++.+.++|.+. +.++++||||. +++.+.+.++++. +... .+. .+ +. . .....
T Consensus 166 ~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~-g~~e~~v~v~~~~~g~~~~~~~~~-~~-~~--~--~~~~~ 238 (450)
T PRK06111 166 IGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIE-DPRHIEIQLLADTHGNTVYLWERE-CS-VQ--R--RHQKV 238 (450)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccC-CCcEEEEEEEEcCCCCEEEEEeec-cc-cc--c--cccce
Confidence 899999999887531 35799999997 3466777666542 2222 221 00 00 0 00000
Q ss_pred eeecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEEecCCCC
Q 021495 239 FRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 239 ~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~lf-G~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
. ... ..+.. .....+.++++|.++.++||+.-+ .+|++++.+ | ++||+|||.=||
T Consensus 239 ~-----~~~--------p~~~~-~~~~~~~i~~~a~~~~~~lg~~g~~~ve~~~~~~-g-~~~viEiN~R~~ 294 (450)
T PRK06111 239 I-----EEA--------PSPFL-DEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQ-K-NFYFLEMNTRLQ 294 (450)
T ss_pred E-----Eec--------CCCCC-CHHHHHHHHHHHHHHHHHcCCCCceeEEEEEcCC-C-CEEEEEEECCcC
Confidence 0 000 00000 001246788999999999999654 599999853 4 589999997654
No 60
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=99.29 E-value=1.8e-11 Score=105.77 Aligned_cols=151 Identities=25% Similarity=0.355 Sum_probs=77.6
Q ss_pred hcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC-
Q 021495 112 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL- 190 (311)
Q Consensus 112 l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l- 190 (311)
|.||+.+++.|.++ +|++|.++.... .....+|+|+||..++| |.++.++.+.+.+...
T Consensus 1 ~~dK~~~~~~L~~~-------gi~~P~~~~~~~----------~~~~~~~~viKp~~G~G---g~~i~~~~~~~~~~~~~ 60 (161)
T PF02655_consen 1 CSDKLKTYKFLKEL-------GIPVPTTLRDSE----------PEPIDGPWVIKPRDGAG---GEGIRIVDSEDELEEFL 60 (161)
T ss_dssp -TSHHHHHHHHTTT--------S--------EE----------SS--SSSEEEEESS----------B--SS--TTE---
T ss_pred CCCHHHHHHHHHcc-------CCCCCCcccccc----------ccccCCcEEEEeCCCCC---CCCeEEECCchhhcccc
Confidence 57999999999875 788994443321 12347899999999655 5779999999888754
Q ss_pred CCCeEEEecccCCCeEEEEEEECCE----EEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCCh
Q 021495 191 EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPR 266 (311)
Q Consensus 191 ~~P~vvQEfInH~G~~~KVyVVGd~----v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~~ 266 (311)
..-.++||||+ |..+.+.++.+. +..+-|.-+.. . ..-|.| +++ .. | ...+..
T Consensus 61 ~~~~i~Qe~i~--G~~~Sv~~l~~~~~~~~l~~~rq~i~~-~-------~~~~~~----~G~-~~------~--~~~~~~ 117 (161)
T PF02655_consen 61 NKLRIVQEFIE--GEPYSVSFLASGGGARLLGVNRQLIGN-D-------DGRFRY----CGG-IV------P--ADTPLK 117 (161)
T ss_dssp ----EEEE-----SEEEEEEEEE-SSSEEEEEEEEEEEET------------TEE----EEE-EE------S------HH
T ss_pred ccceEEeeeeC--CEEeEEEEEEeCCceEEEEechHhhcc-c-------cceeee----ccc-cc------c--cCCchH
Confidence 33349999995 999999888755 22333432211 0 000111 111 10 1 112236
Q ss_pred HHHHHHHHHHHHHh-CCcEe-EEEEEEeCCCCCeEEEEEecCCC
Q 021495 267 PLLERLARELRHRL-GLRLF-NIDMIREHGMRDVFYVIDINYFP 308 (311)
Q Consensus 267 ~~~~~lA~~l~~~L-GL~lf-G~Dvi~~~~tg~~~~ViDVNyfP 308 (311)
+.+.++|+++.++| ||.-+ |||+|.++ + ++||||||.=|
T Consensus 118 ~~~~~~~~~i~~~l~gl~G~~giD~I~~~--~-~~~viEINPR~ 158 (161)
T PF02655_consen 118 EEIIELARRIAEALPGLRGYVGIDFILDD--G-GPYVIEINPRF 158 (161)
T ss_dssp HHHHHHHHHHHTTSTT--EEEEEEEEESS----SEEEEEEESS-
T ss_pred HHHHHHHHHHHHHcCCCeeeEeEEEEEeC--C-cEEEEEEcCCC
Confidence 78999999999999 88755 79999975 3 58999999633
No 61
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.27 E-value=2.5e-10 Score=113.35 Aligned_cols=218 Identities=12% Similarity=0.145 Sum_probs=129.4
Q ss_pred cchhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCch-hHHHHhcCHHHHHHH
Q 021495 43 FLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPP-DAIKHLHNRQSMLQD 121 (311)
Q Consensus 43 ~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~-~ai~~l~dR~~~l~~ 121 (311)
....++.++|++.++++|-+..+.++ .+-+.+..++ -+++++-|- .+.+.+.||..|-+.
T Consensus 55 ~d~~~l~~~a~~~~iD~Vv~g~E~~l------------------~~glad~~~~-~Gip~~Gp~~~aa~le~dK~~~K~~ 115 (426)
T PRK13789 55 LDKSSVQSFLKSNPFDLIVVGPEDPL------------------VAGFADWAAE-LGIPCFGPDSYCAQVEGSKHFAKSL 115 (426)
T ss_pred CCHHHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHH-cCCCcCCCHHHHHHHHcCHHHHHHH
Confidence 34456788888888888776443322 2223333333 367777554 477788999999999
Q ss_pred HHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccccc-----C------
Q 021495 122 VADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSE-----L------ 190 (311)
Q Consensus 122 l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~-----l------ 190 (311)
|.++ +|++|++..+.+ .++..+. ...++||+|+||.. |+ .|.++.++.+.+++.+ +
T Consensus 116 l~~~-------gIpt~~~~~~~~-~~ea~~~--~~~~~~PvVVKp~~--~~-~gkGV~vv~~~eel~~a~~~~~~~~~~g 182 (426)
T PRK13789 116 MKEA-------KIPTASYKTFTE-YSSSLSY--LESEMLPIVIKADG--LA-AGKGVTVATEKKMAKRALKEIFKDKKFG 182 (426)
T ss_pred HHHc-------CCCCCCeEeeCC-HHHHHHH--HHhcCCCEEEEeCC--CC-CCCcEEEECCHHHHHHHHHHHHhhcccc
Confidence 9875 899999987742 2222221 23578999999975 33 4788999999987643 1
Q ss_pred --CCCeEEEecccCCCeEEEEEEECCE--EEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC-
Q 021495 191 --EPPMLLQEFVNHGGILFKIYIIGET--IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP- 265 (311)
Q Consensus 191 --~~P~vvQEfInH~G~~~KVyVVGd~--v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~- 265 (311)
...+++||||+ |.+|-|.++.+. +++ +|-.. + ....|+.+.-.+.+ ..+...|.+. ++.
T Consensus 183 ~~~~~vlIEEfl~--G~E~Sv~~~~dg~~~~~-----lp~~~--d---~k~~~d~d~g~~tg---gmg~~~P~p~-~~~~ 246 (426)
T PRK13789 183 QSGNQVVIEEFME--GQEASIFAISDGDSYFL-----LPAAQ--D---HKRAFDGDQGPNTG---GMGAYCPAPV-ITEA 246 (426)
T ss_pred CCCCeEEEEECcC--CeEEEEEEEECCCEEEE-----ccceE--e---cccccCCCCCCCCC---CceEEeeCCC-CCHH
Confidence 13699999994 899999998654 322 22110 0 01112211111110 0011112110 111
Q ss_pred -hHHH-HHHHHHHHHH---hCCcE---eEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 266 -RPLL-ERLARELRHR---LGLRL---FNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 266 -~~~~-~~lA~~l~~~---LGL~l---fG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
.+.+ +++++.+.++ +|+.+ +.+|++++. .| +++|+|+|.-||.
T Consensus 247 ~~~~i~~~i~~~~~~~l~~~g~~~~Gvl~~e~~it~-~g-~~~vlE~n~R~Gd 297 (426)
T PRK13789 247 ILQKVKERIFDPMFDDFRKKGHPYRGLLYAGLMISP-EG-EPKVVEFNCRFGD 297 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEcC-CC-CEEEEEEecCCCC
Confidence 1223 2344444433 46544 558999975 34 5899999999985
No 62
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.26 E-value=1.7e-10 Score=125.95 Aligned_cols=228 Identities=18% Similarity=0.231 Sum_probs=143.5
Q ss_pred HHHHHHHhCCCeEEEeeCCCCCC------------------------CCCCccEEEEecCChhH---HHHHH-H-HHHhC
Q 021495 47 KLEILARNKGISFVAIDQNRPLS------------------------DQGPFDVVLHKLSGMEW---CKIIE-D-YRQKH 97 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~------------------------~qgp~DviLhK~t~~~~---~~~l~-~-y~~~h 97 (311)
.+++.+++.|++++.+|.+-... .+..+|+|+-=+-++.. ...+. + .+++
T Consensus 32 q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~- 110 (1068)
T PRK12815 32 QACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQ- 110 (1068)
T ss_pred HHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHH-
Confidence 47788899999999999764211 11245666553322211 11122 1 2333
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcce
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh 176 (311)
-++.++ -++++++.+.||..+-+.|.++ +|++|++..+.+. ++..+ ....++||+|+||..+.| |.
T Consensus 111 ~gv~l~g~~~~~i~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s~-ee~~~--~~~~igyPvVVKP~~g~g---G~ 177 (1068)
T PRK12815 111 YGVELLGTNIEAIQKGEDRERFRALMKEL-------GEPVPESEIVTSV-EEALA--FAEKIGFPIIVRPAYTLG---GT 177 (1068)
T ss_pred CCCEEECCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCceeeCCH-HHHHH--HHHHcCCCEEEEECcCCC---CC
Confidence 467665 5789999999999999999875 8999999988532 21111 234689999999987443 57
Q ss_pred eeEEEcCccccccC---------CCCeEEEecccCCCeEEEEEEECCE---EEEEEEecCCCCccccccccceeeeeccc
Q 021495 177 ELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGET---IKVVRRFSLPNVSKRELAKVVSVFRFPRV 244 (311)
Q Consensus 177 ~m~lv~~~~~L~~l---------~~P~vvQEfInH~G~~~KVyVVGd~---v~~~~R~Slpn~~~~~~~~~~~~~~~~~v 244 (311)
++.++.|+++|.+. ..++++||||+ +..++-|-|+.|. +..+ .+..|+......+.+ +.
T Consensus 178 Gv~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~-G~~E~sv~v~rD~~g~~~~~--~~~e~~~p~gi~tG~------s~ 248 (1068)
T PRK12815 178 GGGIAENLEELEQLFKQGLQASPIHQCLLEESIA-GWKEIEYEVMRDRNGNCITV--CNMENIDPVGIHTGD------SI 248 (1068)
T ss_pred ceEEECCHHHHHHHHHHHHhcCCCCeEEEEEccC-CCeEEEEEEEEcCCCCEEEE--EeceecccccccCCc------eE
Confidence 78899999988652 24799999995 2368999998763 2221 111222111110000 00
Q ss_pred ccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 245 SSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 245 s~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
. ..|.. .++ ....++++|.++.++||+. .+++|+.++.++| +++|+|||.=++
T Consensus 249 ~----------v~Pa~-~l~~~~~~~l~~~a~ki~~~Lg~~G~~~vef~l~~~~g-~~~ViEINPR~~ 304 (1068)
T PRK12815 249 V----------VAPSQ-TLTDDEYQMLRSASLKIISALGVVGGCNIQFALDPKSK-QYYLIEVNPRVS 304 (1068)
T ss_pred E----------EecCC-CCCHHHHHHHHHHHHHHHHHcCCCCceEEEEEEECCCC-cEEEEEEecCcc
Confidence 0 01100 111 1356899999999999995 3459999986434 799999996543
No 63
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.25 E-value=5.9e-10 Score=109.80 Aligned_cols=213 Identities=11% Similarity=0.133 Sum_probs=124.7
Q ss_pred HHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHHhc
Q 021495 47 KLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVADL 125 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l 125 (311)
.+.++|++.+++.+-...+. .....+.+.+++ -+++++ .++++++.+.||..|-+.|.++
T Consensus 55 ~l~~~~~~~~id~vi~~~e~------------------~l~~~~~~~l~~-~gi~~~g~~~~~~~~~~dK~~~k~~l~~~ 115 (423)
T TIGR00877 55 ALVEFAKKKKIDLAVIGPEA------------------PLVLGLVDALEE-AGIPVFGPTKEAAQLEGSKAFAKDFMKRY 115 (423)
T ss_pred HHHHHHHHhCCCEEEECCch------------------HHHHHHHHHHHH-CCCeEECCCHHHHHHHCCHHHHHHHHHHC
Confidence 46777887776555432111 111223333434 356655 6788999999999999999875
Q ss_pred cccCCCCccccCcEEEEccCCCCcchhhHhcCCCCc-EEEeeCcCCCCCcceeeEEEcCccccccC------------CC
Q 021495 126 NLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLVVDGSAKSHELFLAYDRFSLSEL------------EP 192 (311)
Q Consensus 126 ~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP-~VvKP~~a~GS~~sh~m~lv~~~~~L~~l------------~~ 192 (311)
+|++|++..+.+. ++..+ ....++|| +|+||..+. +|.++.++.+.+++.+. ..
T Consensus 116 -------gIp~p~~~~~~~~-~~~~~--~~~~~g~P~~VvKp~~~~---gg~Gv~~v~~~~el~~~~~~~~~~~~g~~~~ 182 (423)
T TIGR00877 116 -------GIPTAEYEVFTDP-EEALS--YIQEKGAPAIVVKADGLA---AGKGVIVAKTNEEAIKAVEEILEQKFGDAGE 182 (423)
T ss_pred -------CCCCCCeEEECCH-HHHHH--HHHhcCCCeEEEEECCCC---CCCCEEEECCHHHHHHHHHHHHHHhcCCCCC
Confidence 8999999988532 22222 23468999 999997643 46789999999876531 24
Q ss_pred CeEEEecccCCCeEEEEEEECC--EEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC---hH
Q 021495 193 PMLLQEFVNHGGILFKIYIIGE--TIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP---RP 267 (311)
Q Consensus 193 P~vvQEfInH~G~~~KVyVVGd--~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~---~~ 267 (311)
++++||||+ |..|-|.++.| .+.+. +-.. ... ..+..+.-.. ........|.. .++. .+
T Consensus 183 ~~lvEe~i~--G~E~sv~~~~dg~~~~~~-----~~~~--~~~---~~~~~~~~~~---~g~~~~~~p~~-~~~~~~~~~ 246 (423)
T TIGR00877 183 RVVIEEFLD--GEEVSLLAFVDGKTVIPM-----PPAQ--DHK---RALEGDKGPN---TGGMGAYSPAP-VFTEEVEKR 246 (423)
T ss_pred eEEEEECcc--CceEEEEEEEcCCeEEec-----eeee--eee---ecccCCCCCC---CCCCceecCCC-CCCHHHHHH
Confidence 799999996 78999888743 33221 1000 000 0000000000 00000111211 1222 12
Q ss_pred HHHHHHHHHHHHh---CC---cEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 268 LLERLARELRHRL---GL---RLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 268 ~~~~lA~~l~~~L---GL---~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
..++++..+.++| |+ ..+.+|++++. .| ++|+|||.=||-
T Consensus 247 ~~~~i~~~~~~aL~~~~~~~~G~~~ie~~~t~-~g--~~viEin~R~g~ 292 (423)
T TIGR00877 247 IAEEIVEPTVKGMRKEGTPYKGVLYAGLMLTK-EG--PKVLEFNCRFGD 292 (423)
T ss_pred HHHHHHHHHHHHHHHhCCCcEeEEEEEEEEEC-CC--cEEEEEEccCCC
Confidence 2455666666666 33 44669999975 34 799999988773
No 64
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.21 E-value=4.2e-10 Score=123.22 Aligned_cols=173 Identities=16% Similarity=0.233 Sum_probs=115.0
Q ss_pred CCeeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEE--EccCCCCcchhhHhcCCCCcEEEeeCcCCCCCc
Q 021495 98 PEVTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMV--ITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAK 174 (311)
Q Consensus 98 P~v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~--i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~ 174 (311)
-+++++ .++++++.+.||..+.+.+.++ +|++|++.. +. +.+++.+ ....++||+|+||..++ +
T Consensus 102 ~Gi~fiGps~eai~~~~DK~~~r~~l~~~-------GVPv~P~~~~~v~-s~eea~~--~a~~iGyPvVVKP~~Gg---G 168 (1146)
T PRK12999 102 AGITFIGPTAEVLRLLGDKVAARNAAIKA-------GVPVIPGSEGPID-DIEEALE--FAEEIGYPIMLKASAGG---G 168 (1146)
T ss_pred cCCcccCCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccCCC-CHHHHHH--HHHHhCCCEEEEECCCC---C
Confidence 356654 5689999999999999999875 788866543 32 2222212 23578999999998844 4
Q ss_pred ceeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE---EEE-EEEe-cCCCCccccccccc
Q 021495 175 SHELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKV-VRRF-SLPNVSKRELAKVV 236 (311)
Q Consensus 175 sh~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~---v~~-~~R~-Slpn~~~~~~~~~~ 236 (311)
|++|.+|.++++|... +.++++|+||. +++.+-|-|+||. +.. ..|- |..- ...
T Consensus 169 GrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~-g~~~ieVqvl~D~~G~vv~l~erdcsvqr-------r~q 240 (1146)
T PRK12999 169 GRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVE-NPRHIEVQILGDKHGNVVHLYERDCSVQR-------RHQ 240 (1146)
T ss_pred CCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCC-CCeEEEEEEEEECCCCEEEEEccccceee-------cCc
Confidence 6899999999887541 35799999997 4677888888753 222 2221 1110 000
Q ss_pred eeeeecccccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCC
Q 021495 237 SVFRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 237 ~~~~~~~vs~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
... . ..|.. .++ ..+.+.++|.++.+++|+.-.| +|++++.+ | .+|+||||.=++
T Consensus 241 k~i-----e----------~aP~~-~L~~~~~~~l~~~A~kl~~algy~G~gtVEflvd~d-g-~~yfIEINpRlq 298 (1146)
T PRK12999 241 KVV-----E----------IAPAP-GLSEELRERICEAAVKLARAVGYVNAGTVEFLVDAD-G-NFYFIEVNPRIQ 298 (1146)
T ss_pred cEE-----E----------EcCCC-CCCHHHHHHHHHHHHHHHHHcCCCceEEEEEEEECC-C-CEEEEEEECCCC
Confidence 000 0 00100 111 1467889999999999998776 99999853 4 589999997554
No 65
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.15 E-value=4.5e-09 Score=115.81 Aligned_cols=172 Identities=16% Similarity=0.229 Sum_probs=114.2
Q ss_pred Ceee-eCchhHHHHhcCHHHHHHHHHhccccCCCCccccCc-EEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcce
Q 021495 99 EVTI-LDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPR-QMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (311)
Q Consensus 99 ~v~V-iDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~-~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh 176 (311)
++++ -.++++++.+.||..+-+.+.++ +|++|+ +.++++ .++..+ ....++||+|+||..++ +|.
T Consensus 98 Gi~~iGps~ea~~~~~DK~~ar~ll~~~-------GVPt~p~~~lv~s-~dea~~--~a~~igyPvVVKP~~gg---GG~ 164 (1201)
T TIGR02712 98 GIVFVGPTPEQIRKFGLKHTARELAEAA-------GVPLLPGTGLLSS-LDEALE--AAKEIGYPVMLKSTAGG---GGI 164 (1201)
T ss_pred CCcEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCceeecCC-HHHHHH--HHHhcCCeEEEEECCCC---CCC
Confidence 5554 45689999999999998888875 788755 544432 221111 23578999999998744 468
Q ss_pred eeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE---EEEE-EEe-cCCCCcccccccccee
Q 021495 177 ELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET---IKVV-RRF-SLPNVSKRELAKVVSV 238 (311)
Q Consensus 177 ~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~---v~~~-~R~-Slpn~~~~~~~~~~~~ 238 (311)
+|.++.++++|.+. +.++++||||. +|+.+-|.|+||. +... .|- |... .+...
T Consensus 165 GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~-g~~eveV~v~~Dg~g~vv~lg~rd~s~qr-------~~~k~ 236 (1201)
T TIGR02712 165 GMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVE-NARHVEVQIFGDGKGKVVALGERDCSLQR-------RNQKV 236 (1201)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCC-CCEEEEEEEEECCCCeEEEeeEEEeeeEe-------cCccE
Confidence 99999999988531 35799999997 4789999999753 3322 221 1110 00000
Q ss_pred eeecccccccccCCCCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCC
Q 021495 239 FRFPRVSSAAASADDADLDPGIAELP--PRPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFP 308 (311)
Q Consensus 239 ~~~~~vs~~~~~a~~~~~~p~~~~~p--~~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfP 308 (311)
. . ..|.+ .++ ..+.+.++|.++.++||+.-.+ +|++++..+| .+||+|||.=+
T Consensus 237 v-----e----------e~Pap-~l~~~~~~~l~~~a~~l~~aLgy~G~~~VEfild~~~g-~~y~lEVNpRl 292 (1201)
T TIGR02712 237 V-----E----------ETPAP-NLPPETRQALLAAAERLGEAVNYRSAGTVEFIYDEARD-EFYFLEVNTRL 292 (1201)
T ss_pred E-----E----------EcCCC-CCCHHHHHHHHHHHHHHHHhcCccceEEEEEEEECCCC-CEEEEEEECCc
Confidence 0 0 00100 111 1467889999999999998665 9999986444 69999999644
No 66
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=99.09 E-value=1e-08 Score=98.46 Aligned_cols=193 Identities=20% Similarity=0.271 Sum_probs=131.7
Q ss_pred HHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeee--CchhHHHHhcCHHHHHHHHHhc
Q 021495 48 LEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL--DPPDAIKHLHNRQSMLQDVADL 125 (311)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~Vi--Dp~~ai~~l~dR~~~l~~l~~l 125 (311)
+++.|+++||++ ++-....+...+.-++|.+. |+.|+ -..++++.+.||..+++.+++.
T Consensus 58 ~l~~C~~~~Idv-----------------~~P~~~~~~l~~~r~~F~a~--Gv~l~~~~~~~~l~~~~dK~~~y~~~~~~ 118 (329)
T PF15632_consen 58 CLDFCKEHGIDV-----------------FVPGRNRELLAAHRDEFEAL--GVKLLTASSAETLELADDKAAFYEFMEAN 118 (329)
T ss_pred HHHHHHHhCCeE-----------------EEcCccHHHHHHHHHHHHHh--CCEEEecCCHHHHHHHhhHHHHHHHHHhC
Confidence 678899999765 33333332233344455544 54443 4589999999999999999873
Q ss_pred cccCCCCccccCcEEEEccCCCCcchhhHhcCCCCc---EEEeeCcCCCCCcceeeEEEc-CccccccC-----------
Q 021495 126 NLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLP---LVAKPLVVDGSAKSHELFLAY-DRFSLSEL----------- 190 (311)
Q Consensus 126 ~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP---~VvKP~~a~GS~~sh~m~lv~-~~~~L~~l----------- 190 (311)
+|++|++..+++ .+++.. +-+.+++| +.+||..+.| +.+..++. +.+.++.+
T Consensus 119 -------~ipvp~~~~v~t-~~el~~--a~~~l~~~~~~~CvKP~~g~g---g~GFr~l~~~~~~l~~l~~~~~~~i~~~ 185 (329)
T PF15632_consen 119 -------GIPVPPYWRVRT-ADELKA--AYEELRFPGQPLCVKPAVGIG---GRGFRVLDESRDELDALFEPDSRRISLD 185 (329)
T ss_pred -------CCCCCCEEEeCC-HHHHHH--HHHhcCCCCceEEEecccCCC---cceEEEEccCcchHHHhcCCCcceeCHH
Confidence 789999999853 222211 23456666 9999999554 57788888 44554432
Q ss_pred -----------CCCeEEEecccCCCeEEEEEEECCE--EE-EEEEecCCCCccccccccceeeeecccccccccCCCCCC
Q 021495 191 -----------EPPMLLQEFVNHGGILFKIYIIGET--IK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADL 256 (311)
Q Consensus 191 -----------~~P~vvQEfInH~G~~~KVyVVGd~--v~-~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~ 256 (311)
-+|++++||. +|.+|.|=|+.+. +. ++-|+-. . . . ..+
T Consensus 186 ~~~~~l~~~~~~~~llvMeyL--~G~EySVD~l~~~G~viaaV~R~K~-G----~-~--------------------q~l 237 (329)
T PF15632_consen 186 ELLAALQRSEEFPPLLVMEYL--PGPEYSVDCLADEGRVIAAVPRRKL-G----R-R--------------------QVL 237 (329)
T ss_pred HHHHHHhccCCCCCcEEecCC--CCCeEEEEEEecCCEEEEEEEEEec-C----c-e--------------------eEE
Confidence 3579999999 6888988888665 44 3444432 1 0 0 001
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 257 DPGIAELPPRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 257 ~p~~~~~p~~~~~~~lA~~l~~~LGL~l-fG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
...+.+.++|.++.+.+||+. |||++-.|. .| .++++|||.=|+
T Consensus 238 -------~~~~~l~e~a~~l~~~~~l~g~~NiQ~r~d~-~g-~p~LLEINpR~s 282 (329)
T PF15632_consen 238 -------ENDEELIELARRLAEAFGLDGLFNIQFRYDE-DG-NPKLLEINPRPS 282 (329)
T ss_pred -------EECHHHHHHHHHHHHHhCCCceEEEEEEEcC-CC-CEEEEEeCCCCc
Confidence 114568999999999999984 589999875 45 689999997553
No 67
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=99.08 E-value=1.4e-08 Score=101.10 Aligned_cols=215 Identities=9% Similarity=0.081 Sum_probs=123.9
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHH
Q 021495 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVA 123 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~ 123 (311)
.+.+.++|++.++++|-.-.+.+| ......++.+. +++++ .+.++++.+.||..|.+.+.
T Consensus 54 ~e~l~~~~~~~~id~Vi~~~d~~l-----------------~~~~~~~l~~~--Gi~v~gps~~~a~~e~dK~~~k~~l~ 114 (435)
T PRK06395 54 YDLIEDFALKNNVDIVFVGPDPVL-----------------ATPLVNNLLKR--GIKVASPTMEAAMIETSKMFMRYLME 114 (435)
T ss_pred HHHHHHHHHHhCCCEEEECCChHH-----------------HHHHHHHHHHC--CCcEECCCHHHHHHhhCHHHHHHHHH
Confidence 346788888888777665433222 12222333333 68876 88999999999999999998
Q ss_pred hccccCCCCccccCcEE-EEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCc----cc-cc------cCC
Q 021495 124 DLNLSDCNGKVRVPRQM-VITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR----FS-LS------ELE 191 (311)
Q Consensus 124 ~l~~~~~~~~i~~P~~~-~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~----~~-L~------~l~ 191 (311)
++ +|++|++. ...+.. +... ....++||+|+||.. |+ .|.+|.++.+. ++ +. +..
T Consensus 115 ~~-------gIptp~~~~~~~~~~-e~~~--~~~~~~~PvVVKP~~--~s-ggkGV~v~~~~~~~~~ea~~~~~~~~~~~ 181 (435)
T PRK06395 115 RH-------NIPGNINFNACFSEK-DAAR--DYITSMKDVAVKPIG--LT-GGKGVKVTGEQLNSVDEAIRYAIEILDRD 181 (435)
T ss_pred HC-------CcCCCcccceeCChH-HHHH--HHHhhCCCEEEEeCC--CC-CCCCeEEecCchhhHHHHHHHHHHHhCCC
Confidence 74 89997544 443221 1111 124568999999976 33 46789988642 12 21 123
Q ss_pred CCeEEEecccCCCeEEEEEEE--CCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCC---CCCCCC-
Q 021495 192 PPMLLQEFVNHGGILFKIYII--GETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPG---IAELPP- 265 (311)
Q Consensus 192 ~P~vvQEfInH~G~~~KVyVV--Gd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~---~~~~p~- 265 (311)
.++++|||+. |.+|-|.++ |+.++. ++-....+. ..++.+ .++ .. ..+...+. ...++.
T Consensus 182 ~~viIEEfl~--G~E~Svd~~~dg~~~~~-----l~~~~d~~r-~~~~d~-gp~--tG----gmG~~s~~~~~~p~l~~~ 246 (435)
T PRK06395 182 GVVLIEKKMT--GEEFSLQAFSDGKHLSF-----MPIVQDYKR-AYEGDH-GPN--TG----GMGSISDRDFSLPFLSKD 246 (435)
T ss_pred CcEEEEeecC--CceEEEEEEEcCCeEEE-----ecccceeee-cccCCC-CCc--cC----CCccccCCCCCCCCCCHH
Confidence 5799999995 767766554 555543 221100000 000000 000 00 01111100 001221
Q ss_pred -hHHHHHHHHHHHHHhCC------cEeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 266 -RPLLERLARELRHRLGL------RLFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 266 -~~~~~~lA~~l~~~LGL------~lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
.+.+++++..+.++|++ -++++++++.+ .| ++|||+|.=+|
T Consensus 247 ~~~~i~~i~~~~~~~l~~~~~~~~G~l~~~~~lt~-~g--p~ViE~n~R~g 294 (435)
T PRK06395 247 APERAKHILNDIIRAMKDENNPFKGIMYGQFMDTP-NG--VKVIEINARFA 294 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEEEEEEEEEeC-CC--cEEEEEeCCCC
Confidence 45668889999999994 34469999964 34 79999997665
No 68
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.01 E-value=5.4e-09 Score=101.67 Aligned_cols=228 Identities=18% Similarity=0.249 Sum_probs=139.1
Q ss_pred HHHHHHhCCCeEEEeeCCCCCC------------------------CCCCccEEEEecCChh---HHHHHHH-HHHhCCC
Q 021495 48 LEILARNKGISFVAIDQNRPLS------------------------DQGPFDVVLHKLSGME---WCKIIED-YRQKHPE 99 (311)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl~------------------------~qgp~DviLhK~t~~~---~~~~l~~-y~~~hP~ 99 (311)
-....++.|+.++-||.+-... .+...|.+|--+-++. ..-.+.+ .+.+.-+
T Consensus 21 ac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~Ln~~~~l~e~g~l~~~g 100 (400)
T COG0458 21 ACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQTALNAALELKEKGVLEKYG 100 (400)
T ss_pred HHHHHHhcCCeEEEEcCCCccccCCchhcceeeeecCcHHHHHHHHHhcCcceeecccCCcchhhHHHHHHHhcchhhcC
Confidence 3556688899999998874221 1223455554443321 1111221 1111224
Q ss_pred e-eeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceee
Q 021495 100 V-TILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHEL 178 (311)
Q Consensus 100 v-~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m 178 (311)
| +|.-++++|+++-||..+.+.+.++ ++++|..+....+ ...+ ....++||+|+||..+-| +.+-
T Consensus 101 V~vvgs~~eaI~iaeDr~~fke~m~ei-------gi~~P~~~~~~~~--e~~~--~~~~ig~PvIVrP~~~lG---G~G~ 166 (400)
T COG0458 101 VEVVGSDPEAIEIAEDKKLFKEAMREI-------GIPVPSRIAHSVE--EADE--IADEIGYPVIVKPSFGLG---GSGG 166 (400)
T ss_pred CEEEecCHHHhhhhhhHHHHHHHHHHc-------CCCCCccccccHH--HHhh--hHhhcCCCEEEecCcCCC---CCce
Confidence 4 4578999999999999999999986 7888833222111 1111 345788999999998554 4567
Q ss_pred EEEcCccccccC---------CCCeEEEecccCCCeEEEEEEECCEEE-EEEEecCCCCccccccccceeeeeccccccc
Q 021495 179 FLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAA 248 (311)
Q Consensus 179 ~lv~~~~~L~~l---------~~P~vvQEfInH~G~~~KVyVVGd~v~-~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~ 248 (311)
.+++|+++|..+ -.+++++|+|- ++..|..-|+=|.-. |..--+.-|+.+....+.+...
T Consensus 167 ~i~~n~eel~~~~~~~l~~s~~~~vl~eesi~-G~ke~e~ev~rd~~~n~ivvc~men~dp~gvhtgdsi~--------- 236 (400)
T COG0458 167 GIAYNEEELEEIIEEGLRASPVEEVLIEESII-GWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHTGDSIT--------- 236 (400)
T ss_pred eEEeCHHHHHHHHHhccccCccccceeeeeec-CceEEEEEEEEeCCCCEEEEEeCCccccccccccceee---------
Confidence 899999988763 24689999996 466777777655421 1111233444333322221111
Q ss_pred ccCCCCCCCCCCCCCC---ChHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 249 ASADDADLDPGIAELP---PRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 249 ~~a~~~~~~p~~~~~p---~~~~~~~lA~~l~~~LGL~l-fG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
..| +... ....++..+.++-+.+|..- .+|++.+++++| +|||||||.=+|
T Consensus 237 -------vap--aqtl~d~eyq~~r~~~~~iir~igi~G~~niQ~av~~~~~-~~~viEvNpRvS 291 (400)
T COG0458 237 -------VAP--AQTLTDKEYQMLRDAAIKVIREIGIEGGCNIQFAVDPGGG-ELYVIEINPRVS 291 (400)
T ss_pred -------ecc--ccccccHHHHHHHHHHHHHHHHhcccCCCceeEEEcCCCc-eEEEEEecCCcC
Confidence 111 1111 13445668899999999981 139999998766 899999997554
No 69
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=98.99 E-value=6.4e-09 Score=103.53 Aligned_cols=177 Identities=16% Similarity=0.264 Sum_probs=116.8
Q ss_pred HHHHHHhCCCeeeeCc-hhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEc-cCCCCcchhhHhcCCCCcEEEeeC
Q 021495 90 IEDYRQKHPEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KDSLSIPDQVFEAGLKLPLVAKPL 167 (311)
Q Consensus 90 l~~y~~~hP~v~ViDp-~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~-~~~~~~~~~l~~~~l~fP~VvKP~ 167 (311)
+.+..++ .++..+-| +++++.+.||.+|-+.+++. +||+|+...-. .+.++..+ ....++||||+||.
T Consensus 91 fae~~~~-~gl~fiGP~~~~i~~mgdK~~ar~~~~~a-------GVP~vpgs~~~~~~~ee~~~--~a~~iGyPVivKa~ 160 (449)
T COG0439 91 FAEACAE-AGLTFIGPSAEAIRRMGDKITARRLMAKA-------GVPVVPGSDGAVADNEEALA--IAEEIGYPVIVKAA 160 (449)
T ss_pred HHHHHHH-cCCeeeCcCHHHHHHhhhHHHHHHHHHHc-------CCCcCCCCCCCcCCHHHHHH--HHHHcCCCEEEEEC
Confidence 3344444 45777776 46788888999999999875 77777765110 01111112 24567799999998
Q ss_pred cCCCCCcceeeEEEcCcccccc------------CCCC-eEEEecccCCCeEEEEEEECCEE----EEEEEe-cCCCCcc
Q 021495 168 VVDGSAKSHELFLAYDRFSLSE------------LEPP-MLLQEFVNHGGILFKIYIIGETI----KVVRRF-SLPNVSK 229 (311)
Q Consensus 168 ~a~GS~~sh~m~lv~~~~~L~~------------l~~P-~vvQEfInH~G~~~KVyVVGd~v----~~~~R~-Slpn~~~ 229 (311)
.++| |.+|.+|.+.++|.+ +..| +++|+||+. .+-+=+-|+||.. ....|- |++-..
T Consensus 161 ~GgG---g~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~-~rhievqv~gD~~g~~i~l~eRdcsiqrr~- 235 (449)
T COG0439 161 AGGG---GRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEG-PRHIEVQVLGDGHGNVIHLGERDCSIQRRH- 235 (449)
T ss_pred CCCC---cccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccC-CceEEEEEEEcCcccEEEEEeccCCCcCCc-
Confidence 8544 588999999999865 2345 999999984 6677888999885 223555 543210
Q ss_pred ccccccceeeeecccccccccCCCCCCCCCCCC-CCC--hHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEec
Q 021495 230 RELAKVVSVFRFPRVSSAAASADDADLDPGIAE-LPP--RPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDIN 305 (311)
Q Consensus 230 ~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~-~p~--~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVN 305 (311)
.+ + .+..++. +++ ...+-+.|.++.+.+|-.-.| +.++.+. +| ++|++|+|
T Consensus 236 qk------------v-----------ieeapsp~~~~e~r~~i~~~a~~a~~~~gY~gagtvEfl~~~-~~-~~yfiEmN 290 (449)
T COG0439 236 QK------------V-----------IEEAPSPLLTEELREKIGEAAVRAAKLIGYRGAGTVEFLYDS-NG-EFYFIEMN 290 (449)
T ss_pred cc------------e-----------eeecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeC-CC-CEEEEEEe
Confidence 00 0 0111111 111 345677888888888888888 9999996 45 58999999
Q ss_pred C
Q 021495 306 Y 306 (311)
Q Consensus 306 y 306 (311)
.
T Consensus 291 ~ 291 (449)
T COG0439 291 T 291 (449)
T ss_pred c
Confidence 5
No 70
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=98.98 E-value=1.7e-09 Score=97.82 Aligned_cols=159 Identities=17% Similarity=0.273 Sum_probs=100.0
Q ss_pred CHHHHHHHHHhccccCCCCccccCcEEEEc-cCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC--
Q 021495 114 NRQSMLQDVADLNLSDCNGKVRVPRQMVIT-KDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-- 190 (311)
Q Consensus 114 dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~-~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l-- 190 (311)
||....+.+.++ ++++|+..... .+.++..+ ...+++||+++||..++| +.+|.+|+|+++|.+.
T Consensus 1 Dk~~~~~~~~~~-------gvp~~pg~~~~~~~~eea~~--~a~~iGyPVliKas~ggG---G~gm~iv~~~~eL~~~~~ 68 (211)
T PF02786_consen 1 DKIRFRKLAKKL-------GVPVPPGSTVPISSVEEALE--FAEEIGYPVLIKASAGGG---GRGMRIVHNEEELEEAFE 68 (211)
T ss_dssp SHHHHHHHHHHT-------T-BBSSBESSSBSSHHHHHH--HHHHH-SSEEEEETTSST---TTSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-------CCCcCCCCCCCCCCHHHHHH--HHHhcCCceEEeeccccc---ccccccccchhhhhhhhh
Confidence 677777777776 67777766541 11111111 235689999999988554 6889999999998752
Q ss_pred -----------CCCeEEEecccCCCeEEEEEEECCE---EE-EEEEe-cCCCCccccccccceeeeecccccccccCCCC
Q 021495 191 -----------EPPMLLQEFVNHGGILFKIYIIGET---IK-VVRRF-SLPNVSKRELAKVVSVFRFPRVSSAAASADDA 254 (311)
Q Consensus 191 -----------~~P~vvQEfInH~G~~~KVyVVGd~---v~-~~~R~-Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~ 254 (311)
+.|+++++||. +.+.+-|=|++|. +. ...|- |.+- +.++. .-
T Consensus 69 ~~~~~s~~~fg~~~v~iek~i~-~~reiEvqvi~D~~gn~~~~~~~e~~~~~-hs~ds-----i~--------------- 126 (211)
T PF02786_consen 69 RAQRESPAAFGDGPVLIEKFIE-GAREIEVQVIRDGKGNVVHLGERECSEQR-HSQDS-----IE--------------- 126 (211)
T ss_dssp HHHHHHHHHHSTS-EEEEE--S-SEEEEEEEEEEETTSEEEEEEEEEEEEEE-TTEEE-----EE---------------
T ss_pred hccccCccccccceEEEeeehh-hhhhhhhhhhhccccceeeeeeecccccc-ccccc-----ee---------------
Confidence 67999999997 4588999999874 22 23444 2221 11110 00
Q ss_pred CCCCCCCCCCC--hHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecCCCC
Q 021495 255 DLDPGIAELPP--RPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 255 ~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
..|.. .+++ .+.++++|.++.+.+|+.-.+ |=++++..++ ++||+|+|..-+
T Consensus 127 -~~P~~-~L~~~~~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~-~~y~lEvNpR~~ 181 (211)
T PF02786_consen 127 -EAPAQ-TLSDEERQKLREAAKKIARALGYVGAGTVEFAVDPDDG-EFYFLEVNPRLQ 181 (211)
T ss_dssp -EES-S-SS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEEEETTTT-EEEEEEEESS--
T ss_pred -Eeecc-ccchHHHHHHHHHHHHHHHhhCeeecceEEEEEccCcc-ceeeecccCCCC
Confidence 00100 1111 467889999999999999887 9999996445 899999998644
No 71
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=98.90 E-value=2.6e-08 Score=88.21 Aligned_cols=164 Identities=13% Similarity=0.175 Sum_probs=97.7
Q ss_pred CchhHHHHhcCHH----HHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeE
Q 021495 104 DPPDAIKHLHNRQ----SMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELF 179 (311)
Q Consensus 104 Dp~~ai~~l~dR~----~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~ 179 (311)
|++.+|..+.||- .+++.-.+++. ..+|.=.|.-. .+-..+ ...-+||+|+|--.|+|. -+=.
T Consensus 1 NSL~Siynf~dKpWvF~qLi~i~~~lG~----e~FPLieQt~y-pnh~em-----~s~~~fPvVvKvG~~h~G---~GKv 67 (203)
T PF02750_consen 1 NSLHSIYNFCDKPWVFAQLIKIQKRLGP----EKFPLIEQTYY-PNHREM-----LSAPRFPVVVKVGHAHAG---MGKV 67 (203)
T ss_dssp S-HHHHHHTTSHHHHHHHHHHHHHHHHT----TTS-B---EEE-SSGGGG-----CS-SSSSEEEEESS-STT---TTEE
T ss_pred CcccchhhhcCCcHHHHHHHHHHHHhCC----cccccceeeec-CChhhh-----ccCCCCCEEEEEccccCc---eeEE
Confidence 6889999999995 23332233421 12332222222 111111 134689999995554543 3344
Q ss_pred EEcCccccccC-------CCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecccccccccCC
Q 021495 180 LAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASAD 252 (311)
Q Consensus 180 lv~~~~~L~~l-------~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~ 252 (311)
.|.|...+.++ +.-+.++-||+ .-.+++|--||+.+.++.|+|+.. .|++|.|.--
T Consensus 68 kv~n~~~~qDi~sll~~~~~Y~T~EPfId-~kyDirvqkIG~~ykA~~R~sis~----nWK~N~gsa~------------ 130 (203)
T PF02750_consen 68 KVDNQQDFQDIASLLAITKDYATTEPFID-AKYDIRVQKIGNNYKAYMRTSISG----NWKANTGSAM------------ 130 (203)
T ss_dssp EE-SHHHHHHHHHHHHHHTS-EEEEE----EEEEEEEEEETTEEEEEEEEESSS----TSSTTSSSEE------------
T ss_pred EEccHHHHHHHHHHHHhcCceEEeecccc-ceeEEEEEEEcCeEEEEEEccccc----cccccccchh------------
Confidence 88999887764 66789999996 578999999999999999999752 3554422211
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCeEEEEEecC
Q 021495 253 DADLDPGIAELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 253 ~~~~~p~~~~~p~~~~~~~lA~~l~~~L-GL~lfG~Dvi~~~~tg~~~~ViDVNy 306 (311)
+ .+++.++..+.-+.++.+.+ ||+++++|+|... +| +.||+|||-
T Consensus 131 ---l----Eqi~~~~ryk~Wvd~~s~lfGGlDI~~v~ai~~k-dG-ke~Iievnd 176 (203)
T PF02750_consen 131 ---L----EQIAMTERYKLWVDECSELFGGLDICAVDAIHGK-DG-KEYIIEVND 176 (203)
T ss_dssp ---E----EEE---HHHHHHHHHHGGGGG--SEEEEEEEEET-TS--EEEEEEE-
T ss_pred ---e----eecCCChHHHHHHHHHHHHcCCccEEEEEEEEcC-CC-CEEEEEecC
Confidence 1 12334566777888889999 9999999999875 56 678999995
No 72
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.88 E-value=2e-07 Score=94.18 Aligned_cols=136 Identities=13% Similarity=0.178 Sum_probs=90.5
Q ss_pred hhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeee-CchhHHHHhcCHHHHHHHHH
Q 021495 45 QPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTIL-DPPDAIKHLHNRQSMLQDVA 123 (311)
Q Consensus 45 ~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~Vi-Dp~~ai~~l~dR~~~l~~l~ 123 (311)
...+.+.|++.+++++-+..+.| ..+-+.+.+++ -+++++ .+.++++.+.||..|-+.+.
T Consensus 58 ~~~l~~~a~~~~id~Vi~g~E~~------------------l~~glad~l~~-~Gi~v~Gps~~aa~le~dK~~~K~~l~ 118 (486)
T PRK05784 58 PEEVKKVAKEVNPDLVVIGPEEP------------------LFAGVADVLRE-EGFPVFGASSKCARIEKSKVWARELMW 118 (486)
T ss_pred HHHHHHHHHHhCCCEEEECCchH------------------HHHHHHHHHHh-CCCCEECCcHHHHHHhcCHHHHHHHHH
Confidence 34588889988888776643221 12223333433 477664 77899999999999888888
Q ss_pred hccccCCCCccccC-cEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCcccc-------------cc
Q 021495 124 DLNLSDCNGKVRVP-RQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSL-------------SE 189 (311)
Q Consensus 124 ~l~~~~~~~~i~~P-~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L-------------~~ 189 (311)
++ +|++| ++..+. +.++..+.+ ...+|+|+||.... .|.+|.++.+.+++ ++
T Consensus 119 ~~-------gIpt~~~~~~~~-~~~ea~~~~---~~~~PvVVKP~~~a---ggkGV~iv~~~~e~~~~~~~ea~~~a~~~ 184 (486)
T PRK05784 119 KY-------SIPGRLRYKVFY-DVEEAAKFI---EYGGSVAIKPARQA---GGKGVKVIADLQAYLSQEKREALTKSVND 184 (486)
T ss_pred Hc-------CcCCCccceEeC-CHHHHHHHH---hhcCCEEEeeCCCC---CCCCEEEECChhHhcchhHHHHHHHHHHH
Confidence 74 88986 566654 222222222 22369999997633 46889999996521 11
Q ss_pred -------C---CCCeEEEecccCCCeEEEEEEECCE
Q 021495 190 -------L---EPPMLLQEFVNHGGILFKIYIIGET 215 (311)
Q Consensus 190 -------l---~~P~vvQEfInH~G~~~KVyVVGd~ 215 (311)
+ ..++++|||+. |..|-|.++.|.
T Consensus 185 ~~~~~~~~g~~~~~VlIEEfL~--G~E~SV~al~dG 218 (486)
T PRK05784 185 IKEGSAYYKDVEPKILVEEKVD--GVEYTLQVLTDG 218 (486)
T ss_pred HHHhHhhccCCCCeEEEEEccC--CeEEEEEEEECC
Confidence 1 35799999995 899999988654
No 73
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=98.83 E-value=9.3e-09 Score=90.37 Aligned_cols=135 Identities=24% Similarity=0.313 Sum_probs=68.3
Q ss_pred ccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCc-ccccc--------CCCCeEEEecccC--C
Q 021495 135 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR-FSLSE--------LEPPMLLQEFVNH--G 203 (311)
Q Consensus 135 ~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~-~~L~~--------l~~P~vvQEfInH--~ 203 (311)
.+|++++.. +.+.+.+.+...+ -+|+||+.+.|. .++..+... ..++. -..|+++|+|++. .
T Consensus 11 ~~P~T~vs~-~~~~i~~f~~~~~---~~VlKPl~g~gG---~gV~~i~~~~~n~~~i~e~~~~~~~~~~mvQ~flp~i~~ 83 (173)
T PF02955_consen 11 LIPPTLVSR-DKEEIRAFIEEHG---DIVLKPLDGMGG---RGVFRISRDDPNLNSILETLTKNGERPVMVQPFLPEIKE 83 (173)
T ss_dssp CS--EEEES--HHHHHHHHHHHS---SEEEEESS--TT---TT-EEE-TT-TTHHHHHHHHTTTTTS-EEEEE--GGGGG
T ss_pred cCcCEEEEC-CHHHHHHHHHHCC---CEEEEECCCCCC---cCEEEEcCCCCCHHHHHHHHHhcCCccEEEEeccccccC
Confidence 358888874 3344445445554 399999996654 567666663 22222 2468999999983 3
Q ss_pred CeEEEEEEECCEEEEEEEe-c-CCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHh-
Q 021495 204 GILFKIYIIGETIKVVRRF-S-LPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL- 280 (311)
Q Consensus 204 G~~~KVyVVGd~v~~~~R~-S-lpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~L- 280 (311)
| +.++.+++++...+.|| + -.+|+.|. .. ++..++ .+ +++...++|+++...|
T Consensus 84 G-DkRii~~nG~~~~av~R~P~~gd~R~N~-------------~~------Gg~~~~--~~--lt~~e~~i~~~i~~~L~ 139 (173)
T PF02955_consen 84 G-DKRIILFNGEPSHAVRRIPAKGDFRSNL-------------AA------GGSAEP--AE--LTEREREICEQIGPKLR 139 (173)
T ss_dssp --EEEEEEETTEE-SEEEEE--SS-S---G-------------GG------TSCEEE--EE----HHHHHHHHHHHHHHH
T ss_pred C-CEEEEEECCEEhHHeecCCCCCCceeee-------------cc------CCceee--cC--CCHHHHHHHHHHHHHHh
Confidence 5 99999999998865444 2 22333321 11 111111 11 1233344555544444
Q ss_pred --CCcEeEEEEEEeCCCCCeEEEEEecCC
Q 021495 281 --GLRLFNIDMIREHGMRDVFYVIDINYF 307 (311)
Q Consensus 281 --GL~lfG~Dvi~~~~tg~~~~ViDVNyf 307 (311)
|+-+.|+|+| |+ ++.|||.+
T Consensus 140 ~~Gl~f~GiDvi-----g~--~l~EiNvt 161 (173)
T PF02955_consen 140 EDGLLFVGIDVI-----GD--KLTEINVT 161 (173)
T ss_dssp HTT--EEEEEEE-----TT--EEEEEE-S
T ss_pred hcCcEEEEEecc-----cc--ceEEEecc
Confidence 8999999999 32 58899976
No 74
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=98.78 E-value=4.9e-07 Score=85.88 Aligned_cols=218 Identities=21% Similarity=0.177 Sum_probs=134.0
Q ss_pred cchhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEec----------CChhHH-HHHHHHHHhCC-------------
Q 021495 43 FLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKL----------SGMEWC-KIIEDYRQKHP------------- 98 (311)
Q Consensus 43 ~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~----------t~~~~~-~~l~~y~~~hP------------- 98 (311)
++.+-+...|.+.|..+-.++.=.|..-++..+.+|--- .|++|. +.++++..+.=
T Consensus 19 vntR~vveSA~klGf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~~~dvD~~ii~~sg~e~l~ 98 (389)
T COG2232 19 VNTRPVVESASKLGFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDLAEDVDAPIIPFSGFEALR 98 (389)
T ss_pred ecchHhHHHHHhcCeEEEEeEeecccccccccceEEEecChhhcCcccCCCHHHHHHHHHhhhhhcceeeeecccccccc
Confidence 456678889999999999998877777777777776433 334453 33444432210
Q ss_pred -------CeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCC
Q 021495 99 -------EVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDG 171 (311)
Q Consensus 99 -------~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~G 171 (311)
++.=.+|-..+..+-||+..+..|..+ +++.|....++. ...-..++|.||..+.|
T Consensus 99 ~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~l-------gmp~p~~~~~e~----------~~~gekt~IlKPv~GaG 161 (389)
T COG2232 99 TSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVL-------GMPEPSEKKIEP----------LEEGEKTLILKPVSGAG 161 (389)
T ss_pred ccCccccccccCCcHHHHHHHHHHHhhhhhhhhc-------CCCCChhhhhhh----------hhhcceeeEEeeccCCC
Confidence 111225655888999999999998876 556664433310 11234589999999655
Q ss_pred CCcceeeEEEcCccccccCCCCeEEEecccCCCeEEEEEEECCE----EEEEEEecCCCCccccccccceeeeecccccc
Q 021495 172 SAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGET----IKVVRRFSLPNVSKRELAKVVSVFRFPRVSSA 247 (311)
Q Consensus 172 S~~sh~m~lv~~~~~L~~l~~P~vvQEfInH~G~~~KVyVVGd~----v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~ 247 (311)
. + .-++.-.++.. ..++++|||| .|+-+.|-+|++. ...+-+- +-++ ...+.+.|. ++
T Consensus 162 G--~--~el~~~~Ee~~--~~~~i~Qefi--~G~p~Svs~is~g~~a~~la~N~Q-iI~~----~~~~~~~f~----Y~- 223 (389)
T COG2232 162 G--L--VELVKFDEEDP--PPGFIFQEFI--EGRPVSVSFISNGSDALTLAVNDQ-IIDG----LRGEYSQFV----YK- 223 (389)
T ss_pred c--e--eeecccccccC--Ccceehhhhc--CCceeEEEEEecCcceEEEEEeee-eecc----cccccccce----ec-
Confidence 4 2 22222222222 3789999999 6999999999983 2222221 1111 001111221 11
Q ss_pred cccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEEecC
Q 021495 248 AASADDADLDPGIAELPPRPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 248 ~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~lf-G~Dvi~~~~tg~~~~ViDVNy 306 (311)
+.+.|-+. -+.+++++||..+-..|||--- |+|+++.+ .| +||||||-
T Consensus 224 ------GNlTP~~~--~~~ee~e~la~elV~~lgL~GsnGVDfvl~d-~g--pyViEVNP 272 (389)
T COG2232 224 ------GNLTPFPY--EEVEEAERLAEELVEELGLVGSNGVDFVLND-KG--PYVIEVNP 272 (389)
T ss_pred ------cCcCCCcc--hhhHHHHHHHHHHHHHhccccccccceEeec-CC--cEEEEecC
Confidence 12333221 1236789999999999999766 69999975 34 79999995
No 75
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=98.75 E-value=1.4e-07 Score=86.72 Aligned_cols=162 Identities=20% Similarity=0.258 Sum_probs=96.4
Q ss_pred HHHHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEee
Q 021495 87 CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKP 166 (311)
Q Consensus 87 ~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP 166 (311)
.+.+++|.+ +-|. +++||+.|-||+.++.+|.+ .+++|.+.... ...--.|+||
T Consensus 92 tri~E~~~~-nLG~----S~~Ai~v~aDK~lty~aLr~--------aV~~p~t~e~~-------------~~~~k~ViKp 145 (307)
T COG1821 92 TRIYEEYVE-NLGC----SPRAIRVAADKRLTYKALRD--------AVKQPPTREWA-------------EEPKKYVIKP 145 (307)
T ss_pred HHHHHHHhH-hhCC----CHHHHhHhhhHHHHHHHHhh--------hccCCCccccc-------------cCCceEEecc
Confidence 355666643 3333 48999999999999999975 47888766431 2222589999
Q ss_pred CcCCCCCcceeeEEEcCccccccCCCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceee-eecccc
Q 021495 167 LVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVF-RFPRVS 245 (311)
Q Consensus 167 ~~a~GS~~sh~m~lv~~~~~L~~l~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~-~~~~vs 245 (311)
..+||+ ....+..+...+ +++||||+....-.. ..+|+++. |- +-|+ + .-.| .+.-.+
T Consensus 146 ~dgCgg---e~i~~~~~~pd~------~i~qEfIeG~~lSVS-L~~GEkv~-------pL-svNr--Q-fi~~~~~~~~y 204 (307)
T COG1821 146 ADGCGG---EGILFGRDFPDI------EIAQEFIEGEHLSVS-LSVGEKVL-------PL-SVNR--Q-FIIFAGSELVY 204 (307)
T ss_pred cccCCc---ceeeccCCCcch------hhHHHhcCCcceEEE-EecCCccc-------cc-eech--h-hhhhccceeee
Confidence 999987 334443333332 899999974333333 57788884 31 1111 0 0001 011111
Q ss_pred cccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhC-Cc-EeEEEEEEeCCCCCeEEEEEecCCC
Q 021495 246 SAAASADDADLDPGIAELPPRPLLERLARELRHRLG-LR-LFNIDMIREHGMRDVFYVIDINYFP 308 (311)
Q Consensus 246 ~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LG-L~-lfG~Dvi~~~~tg~~~~ViDVNyfP 308 (311)
..+ ..| ...+..+.+-+.|.++.+.++ |+ ++|+|+|..+ .+||||||.=|
T Consensus 205 ~gg-------~~p--i~he~k~~~~~~Ai~aVeci~Gl~GYVGVDlVlsD----~pYvIEINpR~ 256 (307)
T COG1821 205 NGG-------RTP--IDHELKREAFEEAIRAVECIPGLNGYVGVDLVLSD----EPYVIEINPRP 256 (307)
T ss_pred ccC-------cCC--CCcHHHHHHHHHHHHHHHhhccccceeeEEEEecC----CcEEEEecCCC
Confidence 111 111 112234556677777777666 65 5699999962 47999999755
No 76
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.67 E-value=5.1e-06 Score=80.90 Aligned_cols=143 Identities=14% Similarity=0.193 Sum_probs=91.7
Q ss_pred ccchhHHHHHHHhCCCeEEEeeCCCCCCC---CCCcc-EEEEe-c---CChhHHHHH------------------HHHHH
Q 021495 42 SFLQPKLEILARNKGISFVAIDQNRPLSD---QGPFD-VVLHK-L---SGMEWCKII------------------EDYRQ 95 (311)
Q Consensus 42 ~~~~~~l~~~~~~~gi~~v~iD~~~pl~~---qgp~D-viLhK-~---t~~~~~~~l------------------~~y~~ 95 (311)
|+..=.+++-|++.|+..+.+.......- ....| .+.+. . ++++....+ .+++.
T Consensus 26 shsaL~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~~~di~~~~~~~~l~~~~~iiIp~gs~v~y~~~d~l~ 105 (358)
T PRK13278 26 SHSSLQILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDDFSDILNEAVQEKLREMNAILIPHGSFVAYLGLENVE 105 (358)
T ss_pred cccHHHHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcchhhhcCHHHHHHHhhcCcEEEeCCCcceeecHHHHH
Confidence 34443478889999999999988764211 11213 33333 2 222111111 22333
Q ss_pred hCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcc
Q 021495 96 KHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (311)
Q Consensus 96 ~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~s 175 (311)
.-++++.=..++++...||..+-+.|.++ +|++|+++ . +. ..+.||+|+||.. |+ ++
T Consensus 106 -~~~~p~~gn~~~l~~e~dK~~~k~~L~~a-------GIp~p~~~--~-~~---------~~i~~PvIVKp~~--g~-gg 162 (358)
T PRK13278 106 -KFKVPMFGNREILRWEADRDKERKLLEEA-------GIRIPRKY--E-SP---------EDIDRPVIVKLPG--AK-GG 162 (358)
T ss_pred -HCCCCcCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEe--C-CH---------HHcCCCEEEEeCC--CC-CC
Confidence 23455655678899999999998888875 89999873 1 11 1357999999965 33 57
Q ss_pred eeeEEEcCccccccC------------CCCeEEEecccCCCeEEEE
Q 021495 176 HELFLAYDRFSLSEL------------EPPMLLQEFVNHGGILFKI 209 (311)
Q Consensus 176 h~m~lv~~~~~L~~l------------~~P~vvQEfInH~G~~~KV 209 (311)
.+..++.+++++.+. ...+++||||. |..|-+
T Consensus 163 kGv~i~~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~--G~e~sv 206 (358)
T PRK13278 163 RGYFIAKSPEEFKEKIDKLIERGLITEVEEAIIQEYVV--GVPYYF 206 (358)
T ss_pred CCeEEeCCHHHHHHHHHHHHhccccCCCCeEEEEecCC--CcEEEE
Confidence 899999999877431 46799999996 655443
No 77
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=98.67 E-value=1.4e-06 Score=82.45 Aligned_cols=220 Identities=17% Similarity=0.233 Sum_probs=130.2
Q ss_pred HHHHHHHhCCCeEEEeeCCCCCCC-CC-CccEEEEecCChh---------------------HHHHHHHHHHhCCCeeee
Q 021495 47 KLEILARNKGISFVAIDQNRPLSD-QG-PFDVVLHKLSGME---------------------WCKIIEDYRQKHPEVTIL 103 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~-qg-p~DviLhK~t~~~---------------------~~~~l~~y~~~hP~v~Vi 103 (311)
++.-.|.+.|++++.+|-=..-.- |- ....+ .-++|.+ ....|.++.++ |..||
T Consensus 26 EvaIe~QRLG~eViAVDrY~~APAmqVAhrs~V-i~MlD~~al~avv~rekPd~IVpEiEAI~td~L~elE~~--G~~VV 102 (394)
T COG0027 26 EVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYV-IDMLDGDALRAVVEREKPDYIVPEIEAIATDALVELEEE--GYTVV 102 (394)
T ss_pred HHHHHHHhcCCEEEEecCcCCChhhhhhhheee-eeccCHHHHHHHHHhhCCCeeeehhhhhhHHHHHHHHhC--CceEc
Confidence 466678899999999986331111 10 01111 1223321 12334444433 77788
Q ss_pred CchhHHHHhcCHHHHHHHHHh-ccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEc
Q 021495 104 DPPDAIKHLHNRQSMLQDVAD-LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAY 182 (311)
Q Consensus 104 Dp~~ai~~l~dR~~~l~~l~~-l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~ 182 (311)
=...|.+..+||..+=+..++ | +++|-++...++- ++..+ .-..++||+||||.. +| .+|+-++|.
T Consensus 103 P~ArAt~ltMnRegiRrlAAeeL-------glpTs~Y~fa~s~-~e~~~--a~~~iGfPcvvKPvM--SS-SGkGqsvv~ 169 (394)
T COG0027 103 PNARATKLTMNREGIRRLAAEEL-------GLPTSKYRFADSL-EELRA--AVEKIGFPCVVKPVM--SS-SGKGQSVVR 169 (394)
T ss_pred cchHHHHhhhcHHHHHHHHHHHh-------CCCCccccccccH-HHHHH--HHHHcCCCeeccccc--cc-CCCCceeec
Confidence 889999999999875443333 4 6777777665321 11211 356899999999998 55 479999999
Q ss_pred CccccccC-----------CCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecccccccccC
Q 021495 183 DRFSLSEL-----------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASA 251 (311)
Q Consensus 183 ~~~~L~~l-----------~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a 251 (311)
+++++... ..-+++++||+ .+|-+-.+ ..|.--++ +.|+-+ -+..-
T Consensus 170 ~~e~ve~AW~~A~~g~R~~~~RVIVE~fv~---fd~EiTlL------tvr~~~~~----------~~Fc~P----IGHrq 226 (394)
T COG0027 170 SPEDVEKAWEYAQQGGRGGSGRVIVEEFVK---FDFEITLL------TVRAVDGT----------GSFCAP----IGHRQ 226 (394)
T ss_pred CHHHHHHHHHHHHhcCCCCCCcEEEEEEec---ceEEEEEE------EEEEecCC----------CCcCCC----ccccc
Confidence 99988652 44699999995 45554433 11211111 001000 00001
Q ss_pred CCCCCCCCC--CCCCC--hHHHHHHHHHHHHHhC-CcEeEEEEEEeCCCCCeEEEEEecCCC
Q 021495 252 DDADLDPGI--AELPP--RPLLERLARELRHRLG-LRLFNIDMIREHGMRDVFYVIDINYFP 308 (311)
Q Consensus 252 ~~~~~~p~~--~~~p~--~~~~~~lA~~l~~~LG-L~lfG~Dvi~~~~tg~~~~ViDVNyfP 308 (311)
.+++....| ..+.. .+..+.||+++.++|| ..+||+.+++. ||+.|+-||---|
T Consensus 227 ~dgdY~ESWQP~~mS~~al~~A~~IA~~vt~aLGG~GiFGVElfv~---gDeV~FsEVSPRP 285 (394)
T COG0027 227 EDGDYRESWQPQEMSEAALEEAQSIAKRVTDALGGRGLFGVELFVK---GDEVIFSEVSPRP 285 (394)
T ss_pred CCCChhcccCccccCHHHHHHHHHHHHHHHHhhcCccceeEEEEEe---CCEEEEeecCCCC
Confidence 111221122 12222 3456789999999996 57999999985 5678899887655
No 78
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.62 E-value=1.2e-06 Score=81.81 Aligned_cols=187 Identities=14% Similarity=0.224 Sum_probs=109.8
Q ss_pred HHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCC
Q 021495 94 RQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 173 (311)
Q Consensus 94 ~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~ 173 (311)
++++++++++|| ...||+.+++.|.+-.. -.=-.|.+..+.+ .+++...|..-+ -+++||.. ||.
T Consensus 3 ~k~~~~i~~~n~-----~~~~Kw~v~~~L~~~~~----l~~~LP~T~~~~~-~~~l~~~L~~y~---~vylKP~~--Gs~ 67 (262)
T PF14398_consen 3 LKKQKGIPFFNP-----GFFDKWEVYKALSRDPE----LRPYLPETELLTS-FEDLREMLNKYK---SVYLKPDN--GSK 67 (262)
T ss_pred hHhcCCCEEeCC-----CCCCHHHHHHHHHcCCc----chhhCCCceEcCC-HHHHHHHHHHCC---EEEEEeCC--CCC
Confidence 456789999998 56999999999986310 1124788888742 233444344444 78999988 663
Q ss_pred cceeeEEEcCcc-ccc---------------c-----------C-CCCeEEEeccc---CC--CeEEEEEEECC---E--
Q 021495 174 KSHELFLAYDRF-SLS---------------E-----------L-EPPMLLQEFVN---HG--GILFKIYIIGE---T-- 215 (311)
Q Consensus 174 ~sh~m~lv~~~~-~L~---------------~-----------l-~~P~vvQEfIn---H~--G~~~KVyVVGd---~-- 215 (311)
+.++..|...+ +.. . + +.++++|+.|+ .+ -.||||.|-=+ .
T Consensus 68 -G~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~G~W~ 146 (262)
T PF14398_consen 68 -GKGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIPLATYDGRPFDFRVLVQKNGSGKWQ 146 (262)
T ss_pred -CccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCccccccCCCeEEEEEEEEECCCCCEE
Confidence 44444443332 211 0 1 34899999997 23 46999999832 1
Q ss_pred EE-EEEEecCCCCccccccccceeeeecccccccccCCCCC-CCCC--CCC--CCChHHHHHHHHHHHHHhCC--cEeEE
Q 021495 216 IK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDAD-LDPG--IAE--LPPRPLLERLARELRHRLGL--RLFNI 287 (311)
Q Consensus 216 v~-~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~-~~p~--~~~--~p~~~~~~~lA~~l~~~LGL--~lfG~ 287 (311)
+. ++.|-.-++ .+.+| ++.++....... +... ... -...+....+|..+.+.+|. .-+|+
T Consensus 147 vtg~~~Rva~~~----~ivTN--------~~~GG~~~~~~~~l~~~~~~~~~~~~l~~~a~~ia~~le~~~~~~~gElGi 214 (262)
T PF14398_consen 147 VTGIVARVAKPG----SIVTN--------LSQGGTALPFEEVLRQSEEAEKIREELEDLALEIAQALEKHFGGHLGELGI 214 (262)
T ss_pred EEEEEEEEcCCC----Cceec--------cCCCceecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCceeEEEE
Confidence 22 246665553 12221 122211100000 0000 000 00123445677777788885 56799
Q ss_pred EEEEeCCCCCeEEEEEecCCCCC
Q 021495 288 DMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 288 Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
|+-+|. .| ++++||||.-||.
T Consensus 215 Dl~iD~-~g-~iWliEvN~kP~~ 235 (262)
T PF14398_consen 215 DLGIDK-NG-KIWLIEVNSKPGK 235 (262)
T ss_pred EEEEcC-CC-CEEEEEEeCCCCc
Confidence 999996 46 7999999999985
No 79
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=98.58 E-value=4.3e-06 Score=80.86 Aligned_cols=217 Identities=17% Similarity=0.204 Sum_probs=137.6
Q ss_pred HHHHHHhCCCeEEEeeCCCCCCC-CCCccEEEEecCChh------------------HHHHHHHHHHhCCCeeeeCchhH
Q 021495 48 LEILARNKGISFVAIDQNRPLSD-QGPFDVVLHKLSGME------------------WCKIIEDYRQKHPEVTILDPPDA 108 (311)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl~~-qgp~DviLhK~t~~~------------------~~~~l~~y~~~hP~v~ViDp~~a 108 (311)
+...+...|+.++.+|++..=.- |---++|...-.|.+ |-...-+++..+ +.|.=++++
T Consensus 16 m~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL~~l~~~--~~v~p~~~~ 93 (375)
T COG0026 16 MALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEALEKLAAS--VKVFPSPDA 93 (375)
T ss_pred HHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHHHHHHHHhh--cCcCCCHHH
Confidence 45677889999999998763322 211233333333321 112223344443 677778999
Q ss_pred HHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccc
Q 021495 109 IKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLS 188 (311)
Q Consensus 109 i~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~ 188 (311)
++...||+..=+.|.++ ++++|+|..+++. +++.. ....++||.|+|... |.=++++-.++.+.+++.
T Consensus 94 l~~~qdR~~eK~~l~~~-------Gi~va~~~~v~~~-~el~~--~~~~~g~p~VlKtr~--gGYDGkGQ~~i~~~~~~~ 161 (375)
T COG0026 94 LRIAQDRLVEKQFLDKA-------GLPVAPFQVVDSA-EELDA--AAADLGFPAVLKTRR--GGYDGKGQWRIRSDADLE 161 (375)
T ss_pred HHHHhhHHHHHHHHHHc-------CCCCCCeEEeCCH-HHHHH--HHHHcCCceEEEecc--ccccCCCeEEeeCcccch
Confidence 99999999888888775 8999999999643 23333 235677999999988 445899999999887766
Q ss_pred cC------CCCeEEEecccCCCeEEEEEEE---CCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCC
Q 021495 189 EL------EPPMLLQEFVNHGGILFKIYII---GETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPG 259 (311)
Q Consensus 189 ~l------~~P~vvQEfInH~G~~~KVyVV---Gd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~ 259 (311)
.. ..-+|+++||+= .+++.|.++ .+.+.+ .|-.-|+.. .+++..+ . -|
T Consensus 162 ~~~~~~~~~~~~vlE~fV~F-~~EiSvi~aR~~~G~~~~--yP~~eN~h~------~gIl~~s-------i------aP- 218 (375)
T COG0026 162 LRAAGLAEGGVPVLEEFVPF-EREISVIVARSNDGEVAF--YPVAENVHR------NGILRTS-------I------AP- 218 (375)
T ss_pred hhHhhhhccCceeEEeeccc-ceEEEEEEEEcCCCCEEE--ecccceeee------cCEEEEE-------E------ec-
Confidence 41 222399999964 556776666 112211 121122211 1222110 1 11
Q ss_pred CCCCCC--hHHHHHHHHHHHHHhCCc-EeEEEEEEeCCCCCeEEEEEe
Q 021495 260 IAELPP--RPLLERLARELRHRLGLR-LFNIDMIREHGMRDVFYVIDI 304 (311)
Q Consensus 260 ~~~~p~--~~~~~~lA~~l~~~LGL~-lfG~Dvi~~~~tg~~~~ViDV 304 (311)
+.++. ++..+++|.++.+.|+.- .+|+-+.+..+ | +++|.|+
T Consensus 219 -a~i~~~~~~~A~~~a~~i~~~L~yvGVl~vE~Fv~~d-g-~llvNEi 263 (375)
T COG0026 219 -ARIPDDLQAQAEEMAKKIAEELDYVGVLAVEFFVTPD-G-ELLVNEI 263 (375)
T ss_pred -CcCCHHHHHHHHHHHHHHHHHcCceEEEEEEEEEECC-C-cEEEeec
Confidence 22332 467899999999999875 56898888753 4 6888886
No 80
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=98.56 E-value=8.2e-07 Score=83.42 Aligned_cols=168 Identities=15% Similarity=0.222 Sum_probs=100.7
Q ss_pred chhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcce---eeEEE
Q 021495 105 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH---ELFLA 181 (311)
Q Consensus 105 p~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh---~m~lv 181 (311)
+....+-+.+|=.+|..-.++ +++.|+++.+++..+. ....|+||+|.||-.++|. ... +...+
T Consensus 105 ~w~~l~wlceKPllY~ra~el-------gl~~P~Ty~v~S~~d~-----~~~el~FPvILKP~mgg~~-~~~araKa~~a 171 (415)
T COG3919 105 DWALLRWLCEKPLLYNRAEEL-------GLPYPKTYLVNSEIDT-----LVDELTFPVILKPGMGGSV-HFEARAKAFTA 171 (415)
T ss_pred cHHHHHHHhhCcHHHHHHHHh-------CCCCcceEEecchhhh-----hhhheeeeEEecCCCCCcc-eeehhhheeec
Confidence 356777777777777777776 7899999999753322 2458999999999884422 111 23344
Q ss_pred cCccccccC---------CCCeEEEecccCCCeEEEEEE---E-CCEEE-EEEEecCCCCccccccccceeeeecccccc
Q 021495 182 YDRFSLSEL---------EPPMLLQEFVNHGGILFKIYI---I-GETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSA 247 (311)
Q Consensus 182 ~~~~~L~~l---------~~P~vvQEfInH~G~~~KVyV---V-Gd~v~-~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~ 247 (311)
.+.++++.. ..-+|+||||+.||---.+|- - |..|. +..|+-... +.+|
T Consensus 172 ~d~ee~k~a~~~a~eeigpDnvvvQe~IPGGgE~qfsyaAlw~~g~pvaeftarr~rqy-----------Pvdf------ 234 (415)
T COG3919 172 ADNEEMKLALHRAYEEIGPDNVVVQEFIPGGGENQFSYAALWDKGHPVAEFTARRLRQY-----------PVDF------ 234 (415)
T ss_pred cCHHHHHHHHHHHHHhcCCCceEEEEecCCCCcccchHHHHHhCCCchhhhhcchhhcC-----------Cccc------
Confidence 455665531 234999999997775433331 1 11111 011221100 0000
Q ss_pred cccCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcEe-EEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 248 AASADDADLDPGIAELPPRPLLERLARELRHRLGLRLF-NIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 248 ~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~lf-G~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
.......+.++...+-+.|+.+-+..+-+-+ .||+=.|..+| .|-++|||.=|+.
T Consensus 235 -------gytst~vevvDn~Q~i~aar~~L~si~htGlvevefK~D~RDG-s~KlldvNpRpw~ 290 (415)
T COG3919 235 -------GYTSTVVEVVDNQQVIQAARDFLESIEHTGLVEVEFKYDPRDG-SYKLLDVNPRPWR 290 (415)
T ss_pred -------ccccEEEEecCcHHHHHHHHHHHHhhcccceEEEEEEecCCCC-ceeEEeecCCCcc
Confidence 0111234455555556666666666665544 69999998777 7999999998874
No 81
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=98.51 E-value=3.6e-07 Score=80.30 Aligned_cols=146 Identities=14% Similarity=0.194 Sum_probs=87.9
Q ss_pred ccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC-----CCCeEEEecccCCCeEE
Q 021495 133 KVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-----EPPMLLQEFVNHGGILF 207 (311)
Q Consensus 133 ~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l-----~~P~vvQEfInH~G~~~ 207 (311)
+|++|+|..+.+. +++.+ ....++||+|+|+.. |.-++++..++.+++++... ..||++|+||+. .+++
T Consensus 5 gip~~~~~~i~~~-~~l~~--a~~~iG~P~vlK~~~--~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f-~~Ei 78 (172)
T PF02222_consen 5 GIPTAPYATIDSL-EDLEE--AAESIGFPAVLKTRR--GGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPF-DREI 78 (172)
T ss_dssp T--B-EEEEESSH-HHHHH--HHHHHTSSEEEEESS--SSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---E-SEEE
T ss_pred CCCCCCeEEECCH-HHHHH--HHHHcCCCEEEEccC--cCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccCC-cEEE
Confidence 8999999999642 22222 235689999999877 33368999999999988763 679999999984 6677
Q ss_pred EEEEECCEE-EEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCC-c
Q 021495 208 KIYIIGETI-KVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGL-R 283 (311)
Q Consensus 208 KVyVVGd~v-~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL-~ 283 (311)
-|.|+-+.- .+...+..-|+.. ++++... . .++.+++ ..+++++|+++.+.|+. -
T Consensus 79 SvivaR~~~G~~~~yp~~en~~~------~~il~~s-------------~--~Pa~i~~~~~~~a~~ia~~i~~~l~~vG 137 (172)
T PF02222_consen 79 SVIVARDQDGEIRFYPPVENVHR------DGILHES-------------I--APARISDEVEEEAKEIARKIAEALDYVG 137 (172)
T ss_dssp EEEEEEETTSEEEEEEEEEEEEE------TTEEEEE-------------E--ESCSS-HHHHHHHHHHHHHHHHHHTSSE
T ss_pred EEEEEEcCCCCEEEEcCceEEEE------CCEEEEE-------------E--CCCCCCHHHHHHHHHHHHHHHHHcCcEE
Confidence 777663221 0000110011110 1111110 0 0122222 46788999999999986 4
Q ss_pred EeEEEEEEeCCCCCeEEEEEecC
Q 021495 284 LFNIDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 284 lfG~Dvi~~~~tg~~~~ViDVNy 306 (311)
+|++.+.+.. +|++.||.||-.
T Consensus 138 v~~VE~Fv~~-~g~~v~vNEiaP 159 (172)
T PF02222_consen 138 VLAVEFFVTK-DGDEVLVNEIAP 159 (172)
T ss_dssp EEEEEEEEET-TSTEEEEEEEES
T ss_pred EEEEEEEEec-CCCEEEEEeccC
Confidence 6689999985 464599999854
No 82
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=98.45 E-value=3.4e-06 Score=81.84 Aligned_cols=159 Identities=13% Similarity=0.160 Sum_probs=87.5
Q ss_pred HHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC-----C
Q 021495 117 SMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-----E 191 (311)
Q Consensus 117 ~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l-----~ 191 (311)
.++..|.+ ++|++|+++. +. ..+.||+||||..|.|. -|.+..++.|.++|... +
T Consensus 129 ~~yk~L~~-------aGI~~Pk~~~---~p---------~eId~PVIVKp~~asG~-~srG~f~a~s~eEl~~~a~~l~~ 188 (366)
T PRK13277 129 NYYWLLEK-------AGIPYPKLFK---DP---------EEIDRPVIVKLPEAKRR-LERGFFTASSYEDFYEKSEELIK 188 (366)
T ss_pred HHHHHHHH-------cCCCCceeec---Cc---------cccCccEEEEECCCCCc-cccCeEeeCCHHHHHHHHHhhhh
Confidence 45566655 4899998875 11 35789999999987762 25788899999887642 1
Q ss_pred ---------CCeEEEecccCCCeEEEEEEE--CCEEE--EEEEecCCCCccccccccceeeeeccccccccc-----CCC
Q 021495 192 ---------PPMLLQEFVNHGGILFKIYII--GETIK--VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAAS-----ADD 253 (311)
Q Consensus 192 ---------~P~vvQEfInH~G~~~KVyVV--Gd~v~--~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~-----a~~ 253 (311)
..+++||||...-.-+-+|+- -+++. .+.||-.-|+ +|+...+.-.+.... ...
T Consensus 189 ~g~I~~~~~~~~iIQEyI~G~ey~~d~F~s~l~g~ve~l~id~R~esn~--------dg~~r~pa~~ql~~~~~p~~vv~ 260 (366)
T PRK13277 189 AGVIDREDLKNARIEEYVIGAHFNFNYFYSPIRDRLELLGIDRRIQSNL--------DGFVRLPAPQQLKLNEEPRYIEV 260 (366)
T ss_pred cCcccccccccceeEeccCCCEEEEEEEEeccCCcEEEEEEeecccccc--------ccccccChhhhhhcccCCceEEE
Confidence 345899999632223334543 34232 2333322222 122221110000000 000
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhC-------CcEeEEEEEEeCCCCCeEEEEEecC
Q 021495 254 ADLDPGIAELPPRPLLERLARELRHRLG-------LRLFNIDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 254 ~~~~p~~~~~p~~~~~~~lA~~l~~~LG-------L~lfG~Dvi~~~~tg~~~~ViDVNy 306 (311)
+. .|....-...+.+.+++.++.++++ .--|.+|++++++ + .++|+|||.
T Consensus 261 G~-~p~t~rEslle~v~e~ger~v~a~~~~~~pg~iGpf~lQ~iv~~d-~-~~~V~EInp 317 (366)
T PRK13277 261 GH-EPATIRESLLEKVFEIGEKFVEATKELYPPGIIGPFTLQTIVTPD-L-DFVVYDVAP 317 (366)
T ss_pred cC-ccccchHHHHHHHHHHHHHHHHHhhhhcCcccccceEEEEEEcCC-C-cEEEEEEcC
Confidence 00 0111000124566777777777766 4556799998753 4 689999994
No 83
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=98.34 E-value=5.1e-05 Score=71.75 Aligned_cols=191 Identities=18% Similarity=0.220 Sum_probs=111.3
Q ss_pred CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEcc------C-CCCcc--hhhHhcCCCCcEEEeeCcCCCCCc
Q 021495 104 DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITK------D-SLSIP--DQVFEAGLKLPLVAKPLVVDGSAK 174 (311)
Q Consensus 104 Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~------~-~~~~~--~~l~~~~l~fP~VvKP~~a~GS~~ 174 (311)
||.+....+.||..+.+.+.+. +|++|+.+.... . ..+.. ..........++|+||.. || .
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~-------gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~--G~-~ 85 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDY-------GIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPAN--GS-G 85 (285)
T ss_pred CchhhccccCCHHHHHHHHHHh-------cCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCC--CC-C
Confidence 8889999999999999988875 778888332110 0 01111 111222234799999987 66 4
Q ss_pred ceeeEEEcCccc---------cc----cCC-CCeEEEeccc-CC---------CeEEEEEEE-CC-E--E-EEEEEecCC
Q 021495 175 SHELFLAYDRFS---------LS----ELE-PPMLLQEFVN-HG---------GILFKIYII-GE-T--I-KVVRRFSLP 225 (311)
Q Consensus 175 sh~m~lv~~~~~---------L~----~l~-~P~vvQEfIn-H~---------G~~~KVyVV-Gd-~--v-~~~~R~Slp 225 (311)
++++.++...++ +. .+. .-+++||+|. |+ =-.+||.++ .+ . + .++.|-+-.
T Consensus 86 G~Gi~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~~~~~~~~a~lRlg~~ 165 (285)
T PF14397_consen 86 GKGILVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQHPELAALSPSSVNTIRVVTFLDDGEVEVLMAMLRLGRG 165 (285)
T ss_pred ccCEEEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeCCeeEEEEEEEEeCCC
Confidence 788888776652 11 112 2799999986 32 236888777 22 2 2 235676522
Q ss_pred -----CCccccccccceeeeeccc-cccc-ccCCCCCC--CCC------CCCCCChHHHHHHHHHHHHHh-CCcEeEEEE
Q 021495 226 -----NVSKRELAKVVSVFRFPRV-SSAA-ASADDADL--DPG------IAELPPRPLLERLARELRHRL-GLRLFNIDM 289 (311)
Q Consensus 226 -----n~~~~~~~~~~~~~~~~~v-s~~~-~~a~~~~~--~p~------~~~~p~~~~~~~lA~~l~~~L-GL~lfG~Dv 289 (311)
|+..+.+.. ..+...- ...+ ....+... .|. -..+|.-+++.++|.++.+.+ ++.+.|.||
T Consensus 166 ~~~~DN~~~Ggi~~---~ID~~tGl~~~~~~~~~~~~~~~HPdTg~~~~g~~IP~w~~~~~l~~~~~~~~p~~~~iGWDv 242 (285)
T PF14397_consen 166 GSGVDNFHQGGIGV---GIDLATGLGRFAGYDQDGERYEHHPDTGAPFSGFQIPNWDEILELAKEAHRKFPGLGYIGWDV 242 (285)
T ss_pred CCcccccCCCCEEE---EEecCCCccccccccCCCCEeeeCCCCCCccCCccCCCHHHHHHHHHHHHHHCCCCCeEEEEE
Confidence 222221110 0111110 0000 00011111 121 124666678889999887654 899999999
Q ss_pred EEeCCCCCeEEEEEecCC--CCC
Q 021495 290 IREHGMRDVFYVIDINYF--PGR 310 (311)
Q Consensus 290 i~~~~tg~~~~ViDVNyf--PG~ 310 (311)
.+++ +| +++||.|+. ||+
T Consensus 243 ait~-~G--p~llE~N~~~~pgl 262 (285)
T PF14397_consen 243 AITE-DG--PVLLEGNARWDPGL 262 (285)
T ss_pred EEcC-CC--cEEEEeeCCCCCCc
Confidence 9986 45 799999999 986
No 84
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=98.26 E-value=1.7e-06 Score=81.23 Aligned_cols=53 Identities=17% Similarity=0.366 Sum_probs=32.0
Q ss_pred CcEEEeeCcCCCCCcceeeEEEcCcccccc----CCCCeEEEecccCC----C--eEEEEEEECCE
Q 021495 160 LPLVAKPLVVDGSAKSHELFLAYDRFSLSE----LEPPMLLQEFVNHG----G--ILFKIYIIGET 215 (311)
Q Consensus 160 fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~----l~~P~vvQEfInH~----G--~~~KVyVVGd~ 215 (311)
--+|+||.. |+ .+.++.++.+.+.+.+ ...++|+|+||+.+ | .++|+||+=-.
T Consensus 66 ~~wI~KP~~--~~-rG~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts 128 (292)
T PF03133_consen 66 NLWIVKPSN--GS-RGRGIKLFNNLEQILRFSKNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTS 128 (292)
T ss_dssp --EEEEES----------EEEES-HHHHHCCHCCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T
T ss_pred CEEEEeccc--cC-CCCCceecCCHHHHHHHhhhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEee
Confidence 369999987 55 5789999999888875 46789999999853 4 48999987433
No 85
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.20 E-value=1.1e-05 Score=80.57 Aligned_cols=170 Identities=18% Similarity=0.292 Sum_probs=112.7
Q ss_pred CCeeeeCc-hhHHHHhcCHHHHHHHHHhccccCCCCcccc-CcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcc
Q 021495 98 PEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRV-PRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (311)
Q Consensus 98 P~v~ViDp-~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~-P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~s 175 (311)
-|+..|-| +++|+.+.||...-+..... ++++ |-+--...+.+ . ..-....++||+++|+..++| +
T Consensus 94 ~Gi~FiGP~~~aIrdMG~K~~sk~im~~A-------gVp~vpG~~g~~qs~e-~-~~~~a~eIgyPvMiKa~~GGG---G 161 (670)
T KOG0238|consen 94 AGITFIGPPPSAIRDMGDKSTSKQIMKAA-------GVPLVPGYHGEDQSDE-E-AKKVAREIGYPVMIKATAGGG---G 161 (670)
T ss_pred cCCeEECCCHHHHHHhcchHHHHHHHHhc-------CCccccCcccccccHH-H-HHHHHHhcCCcEEEEeccCCC---C
Confidence 47777776 57899999998876666654 4443 33221111111 1 112357899999999987554 6
Q ss_pred eeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCEEE----EEEEe-cCCCCccccccccce
Q 021495 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGETIK----VVRRF-SLPNVSKRELAKVVS 237 (311)
Q Consensus 176 h~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~v~----~~~R~-Slpn~~~~~~~~~~~ 237 (311)
.+|-|+.+++++.+. +.-++++.||+ +.|-+-|-|.||+.- .-+|- |+.- .+
T Consensus 162 kGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~-npRHiEvQv~gD~hGnav~l~ERdCSvQR-------Rn-- 231 (670)
T KOG0238|consen 162 KGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFID-NPRHIEVQVFGDKHGNAVHLGERDCSVQR-------RN-- 231 (670)
T ss_pred cceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhcc-CCceEEEEEEecCCCcEEEecccccchhh-------hh--
Confidence 889999999877542 45699999998 577888999999852 22232 2210 00
Q ss_pred eeeecccccccccCCCCCCCCCCCC-CCC--hHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecC
Q 021495 238 VFRFPRVSSAAASADDADLDPGIAE-LPP--RPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 238 ~~~~~~vs~~~~~a~~~~~~p~~~~-~p~--~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNy 306 (311)
+ .-.+.+++. ++. ...+.+.|.++.+++|-.-+| +.+|.|+ .+ .+|+.|.|.
T Consensus 232 -----Q----------KiiEEaPap~l~~e~R~~lgeaAv~aa~avgY~~aGTVEFi~D~-~~-~FyFmEmNT 287 (670)
T KOG0238|consen 232 -----Q----------KIIEEAPAPNLPEETRRALGEAAVRAAKAVGYVGAGTVEFIVDS-KD-NFYFMEMNT 287 (670)
T ss_pred -----h----------hhhhcCCCCCCCHHHHHHHHHHHHHHHHhhCCcccceEEEEEcC-CC-cEEEEEeec
Confidence 0 001111221 332 456789999999999999999 9999997 34 699999996
No 86
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.06 E-value=3.7e-05 Score=77.71 Aligned_cols=170 Identities=15% Similarity=0.237 Sum_probs=112.4
Q ss_pred CCeeeeCc-hhHHHHhcCHHHHHHHHHhccccCCCCccc-cCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcc
Q 021495 98 PEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVR-VPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKS 175 (311)
Q Consensus 98 P~v~ViDp-~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~-~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~s 175 (311)
-+++.|=| +.+|+.+.||...=....+. +++ +|-+.=...+.+.+. -....++||+.+|...++| +
T Consensus 98 aGlvfIGP~~~aI~aMGdK~~AK~l~~~A-------gVp~VPG~~g~~qd~~~~~--~~A~eiGyPVlIKAsaGGG---G 165 (645)
T COG4770 98 AGLVFIGPSAGAIRAMGDKIAAKKLAAEA-------GVPTVPGYHGPIQDAAELV--AIAEEIGYPVLIKASAGGG---G 165 (645)
T ss_pred CCcEEECCCHHHHHHhccHHHHHHHHHHc-------CCCccCCCCCcccCHHHHH--HHHHhcCCcEEEEeccCCC---C
Confidence 47787775 57899999998765555554 332 344332111111111 1346899999999987444 6
Q ss_pred eeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCEE----EEEEEe-cCCCCccccccccce
Q 021495 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGETI----KVVRRF-SLPNVSKRELAKVVS 237 (311)
Q Consensus 176 h~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~v----~~~~R~-Slpn~~~~~~~~~~~ 237 (311)
.+|-+|.+++++.+. +.-|+++.|+.. -|-+-|-|+||+. +..+|- |+.-
T Consensus 166 KGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~-PRHIEiQV~aD~HGNvv~LgERdCSlQR----------- 233 (645)
T COG4770 166 KGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDK-PRHIEIQVFADQHGNVVHLGERDCSLQR----------- 233 (645)
T ss_pred CceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCC-CceEEEEEEecCCCCEEEeeccccchhh-----------
Confidence 889999999887652 457999999985 6778899999884 233443 4320
Q ss_pred eeeecccccccccCCCCCCCCCCCC-CCC--hHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecC
Q 021495 238 VFRFPRVSSAAASADDADLDPGIAE-LPP--RPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 238 ~~~~~~vs~~~~~a~~~~~~p~~~~-~p~--~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNy 306 (311)
-++ .-.+..++. +.+ ...|-+-|.++.++.|-.-+| |-+|+|.+ + .+|+.|+|.
T Consensus 234 ---RhQ----------KVIEEAPaP~l~~~~R~amg~aAv~~a~avgY~gAGTVEFivd~~-~-~f~FlEMNT 291 (645)
T COG4770 234 ---RHQ----------KVIEEAPAPFLTEETREAMGEAAVAAAKAVGYVGAGTVEFIVDAD-G-NFYFLEMNT 291 (645)
T ss_pred ---hcc----------hhhhcCCCCCCCHHHHHHHHHHHHHHHHhcCCCcCceEEEEEcCC-C-cEEEEEeec
Confidence 000 001111111 111 456888999999999999999 99999974 4 389999996
No 87
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=97.82 E-value=0.00011 Score=76.88 Aligned_cols=171 Identities=18% Similarity=0.332 Sum_probs=110.5
Q ss_pred CCeeeeCc-hhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhh-HhcCCCCcEEEeeCcCCCCCcc
Q 021495 98 PEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQV-FEAGLKLPLVAKPLVVDGSAKS 175 (311)
Q Consensus 98 P~v~ViDp-~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l-~~~~l~fP~VvKP~~a~GS~~s 175 (311)
-|+..|-| ++.++.+.||..--..-.+.+++ . +|.+- ...+.+.+.+ ...+.+||+++|-.+++| +
T Consensus 104 aGI~FIGP~~e~ld~~GdKv~Ar~~A~~agvP----v--ipgt~---~~~~~~ee~~~fa~~~gyPvmiKA~~GGG---G 171 (1149)
T COG1038 104 AGITFIGPKPEVLDMLGDKVKARNAAIKAGVP----V--IPGTD---GPIETIEEALEFAEEYGYPVMIKAAAGGG---G 171 (1149)
T ss_pred cCCEEeCCCHHHHHHhccHHHHHHHHHHcCCC----c--cCCCC---CCcccHHHHHHHHHhcCCcEEEEEccCCC---c
Confidence 47888876 67888999998643333333222 1 11110 0011111111 246789999999988554 6
Q ss_pred eeeEEEcCccccccC-------------CCCeEEEecccCCCeEEEEEEECCE----EEEEEEe-cCCCCccccccccce
Q 021495 176 HELFLAYDRFSLSEL-------------EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKVVS 237 (311)
Q Consensus 176 h~m~lv~~~~~L~~l-------------~~P~vvQEfInH~G~~~KVyVVGd~----v~~~~R~-Slpn~~~~~~~~~~~ 237 (311)
++|-+|.++++|.+. +..++++.||. +.+-+-|-++||+ |+..+|- |..- .+..
T Consensus 172 RGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve-~pkHIEVQiLgD~~GnvvHLfERDCSvQR-------RhQK 243 (1149)
T COG1038 172 RGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVE-NPKHIEVQILGDTHGNVVHLFERDCSVQR-------RHQK 243 (1149)
T ss_pred cceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhc-CcceeEEEEeecCCCCEEEEeecccchhh-------ccce
Confidence 999999999988652 55799999998 5778999999987 4455554 4320 0000
Q ss_pred eeeecccccccccCCCCCCCCCCCCCCC--hHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecC
Q 021495 238 VFRFPRVSSAAASADDADLDPGIAELPP--RPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 238 ~~~~~~vs~~~~~a~~~~~~p~~~~~p~--~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNy 306 (311)
.. ...|++ .+++ ..++-+-|.++.+..|-.-+| +.+++|.+ | ++|+||||-
T Consensus 244 VV---------------E~APa~-~L~~~~R~~ic~~Avkla~~~~Y~~AGTvEFLvd~~-~-~fyFIEvNP 297 (1149)
T COG1038 244 VV---------------EVAPAP-YLSPELRDEICDDAVKLARNIGYINAGTVEFLVDED-G-KFYFIEVNP 297 (1149)
T ss_pred eE---------------EecCCC-CCCHHHHHHHHHHHHHHHHHcCCcccceEEEEEcCC-C-cEEEEEecC
Confidence 00 011111 1111 456888999999999999999 99999975 4 589999994
No 88
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.00012 Score=70.38 Aligned_cols=183 Identities=9% Similarity=0.123 Sum_probs=112.0
Q ss_pred HHHHHHHHHhCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEee
Q 021495 87 CKIIEDYRQKHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKP 166 (311)
Q Consensus 87 ~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP 166 (311)
+..+..+. +.+++.||++.++...+||--...-|.++..+.+...++.=.+... .+ ...+ ...-+||+|||=
T Consensus 175 rslvig~q--yagiP~vNSl~SvynFcdkpwvf~Qlvki~~slG~e~fPli~qt~y-Pn----HK~m-~s~~tyPvVVkv 246 (488)
T KOG3895|consen 175 RSLVIGLQ--YAGIPSVNSLTSVYNFCDKPWVFAQLVKITKSLGPEKFPLIEQTFY-PN----HKEM-LSQPTYPVVVKV 246 (488)
T ss_pred HHHHHHHH--hcCCcccchhHHHHHhccchHHHHHHHHHHHhcCccccccceeeec-CC----chhh-ccCCCCcEEEEe
Confidence 33344343 4689999999999999999644444444333333233433222221 11 1111 223469999995
Q ss_pred CcCCCCCcceeeEEEcCccccccC-------CCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCccccccccceee
Q 021495 167 LVVDGSAKSHELFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVF 239 (311)
Q Consensus 167 ~~a~GS~~sh~m~lv~~~~~L~~l-------~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~ 239 (311)
-.|+ + +-+=..|.|.++|.++ +.-.-+|-||+ .-.+++|--||..+.++.|.|+-. .|++|.|.-
T Consensus 247 ghah--s-GmGKiKV~Nh~dfqDi~svval~~Tyat~epFiD-aKYDiriQKIG~nYKaymRtsIsg----nWKtNtGSa 318 (488)
T KOG3895|consen 247 GHAH--S-GMGKIKVENHEDFQDIASVVALTKTYATAEPFID-AKYDIRIQKIGHNYKAYMRTSISG----NWKTNTGSA 318 (488)
T ss_pred cccc--c-ccceeeecchhhhHhHHHHHHHHhhhhhcccccc-ccceeehhhhhhhHHHHhhhhhcc----CcccCchHH
Confidence 4433 2 3445667888888764 55677899997 467999999999999999999852 455543221
Q ss_pred eecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHHHHh-CCcEeEEEEEEeCCCCCeEEEEEecC
Q 021495 240 RFPRVSSAAASADDADLDPGIAELPPRPLLERLARELRHRL-GLRLFNIDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 240 ~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~L-GL~lfG~Dvi~~~~tg~~~~ViDVNy 306 (311)
-..+++ -.+.-+.....+.+.+ ||++..+|.+... .| +=||+|||-
T Consensus 319 mLEQIa-------------------mseRyklwvdtcse~fGgldICav~alhsK-dG-rd~i~eV~d 365 (488)
T KOG3895|consen 319 MLEQIA-------------------MSERYKLWVDTCSEMFGGLDICAVKALHSK-DG-RDYIIEVMD 365 (488)
T ss_pred HHHHHH-------------------HHHHHHHHHHHHHHhcCCcceEEeeeeecc-cc-hhheeeecc
Confidence 001100 0122334445555555 5889999998864 45 458999995
No 89
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=97.39 E-value=0.00086 Score=69.21 Aligned_cols=171 Identities=13% Similarity=0.252 Sum_probs=108.1
Q ss_pred CCeeeeCc-hhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcce
Q 021495 98 PEVTILDP-PDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (311)
Q Consensus 98 P~v~ViDp-~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh 176 (311)
.|+..|-| |+-|+.+.||..--+.-.+.+.+- .-+||.-+... ++..+. ....+||+|.|-..++ +++
T Consensus 130 AGi~fiGPspeVi~~mGDKv~AR~~Ai~agVpv---VPGTpgPitt~---~EA~eF--~k~yG~PvI~KAAyGG---GGR 198 (1176)
T KOG0369|consen 130 AGIRFIGPSPEVIDSMGDKVAARAIAIEAGVPV---VPGTPGPITTV---EEALEF--VKEYGLPVIIKAAYGG---GGR 198 (1176)
T ss_pred cCceEeCCCHHHHHHhhhHHHHHHHHHHcCCCc---cCCCCCCcccH---HHHHHH--HHhcCCcEEEeecccC---CCc
Confidence 57777765 678889999886443333332220 01233222211 111121 2467899999977644 479
Q ss_pred eeEEEcCcccccc------------C-CCCeEEEecccCCCeEEEEEEECCE----EEEEEEe-cCCCCcccccccccee
Q 021495 177 ELFLAYDRFSLSE------------L-EPPMLLQEFVNHGGILFKIYIIGET----IKVVRRF-SLPNVSKRELAKVVSV 238 (311)
Q Consensus 177 ~m~lv~~~~~L~~------------l-~~P~vvQEfInH~G~~~KVyVVGd~----v~~~~R~-Slpn~~~~~~~~~~~~ 238 (311)
+|-+|..-+++++ + +..+.++.|++. .+-+-|-.+||+ ++.++|- |..-
T Consensus 199 GmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ek-PrHIEvQllgD~~GNvvHLyERDCSvQR------------ 265 (1176)
T KOG0369|consen 199 GMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEK-PRHIEVQLLGDKHGNVVHLYERDCSVQR------------ 265 (1176)
T ss_pred ceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcC-cceeEEEEecccCCCEEEEeecccchhh------------
Confidence 9999999887754 1 457999999986 567899999988 3344443 2210
Q ss_pred eeecccccccccCCCCCCCCCCC-CCCC--hHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCCeEEEEEecC
Q 021495 239 FRFPRVSSAAASADDADLDPGIA-ELPP--RPLLERLARELRHRLGLRLFN-IDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 239 ~~~~~vs~~~~~a~~~~~~p~~~-~~p~--~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~~~~ViDVNy 306 (311)
-++. -.+..++ .+|+ .+.+..-|.+|.+..|-.-+| +.+++|.. | ++|+||||.
T Consensus 266 --RHQK----------VVEiAPA~~Lp~~vR~~~~~davklAk~vgY~NAGTvEFLvD~~-g-~hYFIEvN~ 323 (1176)
T KOG0369|consen 266 --RHQK----------VVEIAPAKTLPPEVRDAILTDAVKLAKHVGYENAGTVEFLVDQK-G-RHYFIEVNP 323 (1176)
T ss_pred --hhcc----------eeEecccccCCHHHHHHHHHHHHHHHHHhCcccCCceEEEEccC-C-CEEEEEecC
Confidence 0000 0111111 2333 456778899999999999999 99999974 5 679999995
No 90
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.011 Score=58.59 Aligned_cols=212 Identities=17% Similarity=0.274 Sum_probs=126.2
Q ss_pred hHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCchhHHHHhc-CHHHHHHHHHh
Q 021495 46 PKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLH-NRQSMLQDVAD 124 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~ai~~l~-dR~~~l~~l~~ 124 (311)
..++++|++.+++++-|=++.||.. + ....+.+ -|++|.=|..+..++- +|.-+=..+.+
T Consensus 53 ~~lv~fA~~~~idl~vVGPE~pL~~------------G-----vvD~l~~--~Gi~vFGPsk~AA~lE~SK~faK~fm~k 113 (428)
T COG0151 53 EALVAFAKEKNVDLVVVGPEAPLVA------------G-----VVDALRA--AGIPVFGPTKAAAQLEGSKAFAKDFMKK 113 (428)
T ss_pred HHHHHHHHHcCCCEEEECCcHHHhh------------h-----hHHHHHH--CCCceeCcCHHHHHHHhhHHHHHHHHHH
Confidence 5699999999999999999888773 1 1222232 4899999987766653 45444455555
Q ss_pred ccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC-------------C
Q 021495 125 LNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL-------------E 191 (311)
Q Consensus 125 l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l-------------~ 191 (311)
.+||++.+-+.+ +.+...++ -...+.|+|+|| +|-+.+-++.++.+.++..+. .
T Consensus 114 -------~~IPta~y~~f~-~~e~a~ay--i~~~g~piVVKa---dGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g 180 (428)
T COG0151 114 -------YGIPTAEYEVFT-DPEEAKAY--IDEKGAPIVVKA---DGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAG 180 (428)
T ss_pred -------cCCCcccccccC-CHHHHHHH--HHHcCCCEEEec---ccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCC
Confidence 478888888775 44333333 346788999996 355567789999987654331 2
Q ss_pred CCeEEEecccCCCeEEEEEEE--CCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCC----
Q 021495 192 PPMLLQEFVNHGGILFKIYII--GETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPP---- 265 (311)
Q Consensus 192 ~P~vvQEfInH~G~~~KVyVV--Gd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~---- 265 (311)
..+|++||.. |.+|.++++ |+.+.- +|-.. +-+. .|+=+ ++.++.-.+...|.+ -+++
T Consensus 181 ~~VVIEEfL~--GeE~S~~a~~DG~~v~p-----~p~aQ--DhKr---a~dgD---~GPNTGGMGaysp~P-~~t~e~~~ 244 (428)
T COG0151 181 ARVVIEEFLD--GEEFSLQAFVDGKTVIP-----MPTAQ--DHKR---AYDGD---TGPNTGGMGAYSPAP-FITDEVVE 244 (428)
T ss_pred CcEEEEeccc--ceEEEEEEEEcCCeEEE-----Ccccc--cccc---ccCCC---CCCCCCCCCCCCCCC-CCCHHHHH
Confidence 4599999995 777777665 555531 33111 1000 01000 011111122222321 1111
Q ss_pred ---hHHHHHHHHHHHHHhCCcEeEE---EEEEeCCCCCeEEEEEecCCCC
Q 021495 266 ---RPLLERLARELRHRLGLRLFNI---DMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 266 ---~~~~~~lA~~l~~~LGL~lfG~---Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
.+.++..++.+++. |..+-|| =+++.. .| ++|||.|.=.|
T Consensus 245 ~~~~~Iv~ptv~gm~~E-G~~f~GvLy~glMlt~-~G--PkViEfN~RFG 290 (428)
T COG0151 245 RAVEEIVEPTVEGMAKE-GYPFRGVLYAGLMLTA-DG--PKVIEFNARFG 290 (428)
T ss_pred HHHHHHHHHHHHHHHHc-CCCceEEEEeEEEEcC-CC--cEEEEEecccC
Confidence 13345566777777 7777773 345543 35 78999997444
No 91
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=97.29 E-value=0.025 Score=52.17 Aligned_cols=178 Identities=15% Similarity=0.200 Sum_probs=99.2
Q ss_pred chhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCc
Q 021495 105 PPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDR 184 (311)
Q Consensus 105 p~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~ 184 (311)
.-.-...|.||+..-.-+++.. +..-.|+.+-+..+.+++ ....|.-++|+||..+||+ ..++.+.
T Consensus 11 ~~~~~~~~~DK~~VR~yv~~~~-----g~~~l~pll~v~~~~~~i----~~~~Lp~~fViK~nhgsg~-----~~i~~dk 76 (239)
T PF14305_consen 11 RNPLFTKLADKYAVREYVEEKI-----GEEYLPPLLGVYDNPDDI----DFDSLPDKFVIKPNHGSGS-----NIIVRDK 76 (239)
T ss_pred CCccceecchHHHHHHHHHHhC-----CCceECceeecCCChhhh----hhhcCCCCEEEEEecCCCc-----EEEEeCC
Confidence 3344556788887766666531 123444454443333222 3456778999999985553 3444443
Q ss_pred cccc--------------------------cCCCCeEEEecccCC-C---eEEEEEEECCEEEEEEEecCCCCccccccc
Q 021495 185 FSLS--------------------------ELEPPMLLQEFVNHG-G---ILFKIYIIGETIKVVRRFSLPNVSKRELAK 234 (311)
Q Consensus 185 ~~L~--------------------------~l~~P~vvQEfInH~-G---~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~ 234 (311)
..+. .+.+-++++||+... | ++||+||.++++.+..--+-.. +..
T Consensus 77 ~~~d~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~~~~~~~~~DYKf~cF~G~~~~i~v~~~r~---~~~-- 151 (239)
T PF14305_consen 77 SKLDIEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLEDEDGKIPRDYKFFCFNGKPKFIQVDSDRF---GNH-- 151 (239)
T ss_pred cccCHHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccccCCCCCcceEEEEEECCEEEEEEEEeCCC---CCe--
Confidence 2211 024559999999966 4 6999999999865533222110 000
Q ss_pred cceeeeecccccccccCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 235 VVSVFRFPRVSSAAASADDADLDPGIAELPP-RPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 235 ~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~-~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
...+|+-+= .......... .....+.|. .++|-++|..|.+- ..+.-||+-..+ | ++|+=|+=.+||
T Consensus 152 ~~~~yd~dw-~~l~~~~~~~--~~~~~~kP~~l~emi~iA~~Ls~~--f~fvRVDlY~~~--~-~iyFGElTf~p~ 219 (239)
T PF14305_consen 152 KRNFYDRDW-NRLPFRSDYP--PDEDIPKPKNLEEMIEIAEKLSKG--FPFVRVDLYNVD--G-KIYFGELTFTPG 219 (239)
T ss_pred EEEEECccc-CCCccccCCC--CCCCCCCChhHHHHHHHHHHHccC--CCEEEEEEEEeC--C-cEEEEeeecCCC
Confidence 011222100 0000000000 111112333 57788999999887 457789998764 3 589999999987
No 92
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=97.10 E-value=0.0015 Score=58.53 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=48.0
Q ss_pred CccccCcEEEEccCCCCcchhhHhcCCCCcE-EEeeCcCCCCCcceeeEEEcCcccccc----------C---CCCeEEE
Q 021495 132 GKVRVPRQMVITKDSLSIPDQVFEAGLKLPL-VAKPLVVDGSAKSHELFLAYDRFSLSE----------L---EPPMLLQ 197 (311)
Q Consensus 132 ~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~-VvKP~~a~GS~~sh~m~lv~~~~~L~~----------l---~~P~vvQ 197 (311)
.+|+|+++.+.. +.++..+.+.. ..+|+ |+|+. |.+.+.++.|+.+.++..+ + ..++|+|
T Consensus 13 ~~IPTa~~~~f~-~~~~A~~~l~~--~~~p~~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 13 YGIPTAKYKVFT-DYEEALEYLEE--QGYPYVVIKAD---GLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp TT-SB--EEEES-SHHHHHHHHHH--HSSSEEEEEES---SSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred cCCCCCCeeEEC-CHHHHHHHHHh--cCCCceEEccC---CCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 489999888885 33333344443 46677 99964 6667789999998865322 1 3579999
Q ss_pred ecccCCCeEEEEEEECCE
Q 021495 198 EFVNHGGILFKIYIIGET 215 (311)
Q Consensus 198 EfInH~G~~~KVyVVGd~ 215 (311)
||+ .|.++.++++=|.
T Consensus 87 E~l--~G~E~S~~a~~dG 102 (194)
T PF01071_consen 87 EFL--EGEEVSLFALTDG 102 (194)
T ss_dssp E-----SEEEEEEEEEES
T ss_pred ecc--CCeEEEEEEEEcC
Confidence 999 5998888776443
No 93
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=96.80 E-value=0.0018 Score=63.48 Aligned_cols=81 Identities=22% Similarity=0.231 Sum_probs=56.9
Q ss_pred CccccCcEEEEccCCCCcchhhHhcCCC-CcEEEeeCcC-CCCCcceeeEEEcCcccccc-----CC-------------
Q 021495 132 GKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVV-DGSAKSHELFLAYDRFSLSE-----LE------------- 191 (311)
Q Consensus 132 ~~i~~P~~~~i~~~~~~~~~~l~~~~l~-fP~VvKP~~a-~GS~~sh~m~lv~~~~~L~~-----l~------------- 191 (311)
.+|++|++.++.+ .++..+ ....++ ||+|+||..- +|..++.++.++.+++++.+ ++
T Consensus 15 ~GIpvp~~~~~~~-~~ea~~--~~~~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~ 91 (386)
T TIGR01016 15 YGIPVPRGYVATS-VEEAEE--IAAKLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQ 91 (386)
T ss_pred cCCCCCCceeeCC-HHHHHH--HHHHhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceeecccCCCCC
Confidence 4899999998843 222222 234577 9999999732 23434668999988877643 11
Q ss_pred --CCeEEEecccCCCeEEEEEEECCEE
Q 021495 192 --PPMLLQEFVNHGGILFKIYIIGETI 216 (311)
Q Consensus 192 --~P~vvQEfInH~G~~~KVyVVGd~v 216 (311)
..+++|||+++ |+++-|.+++|+.
T Consensus 92 ~~~~vlVEe~v~~-g~E~~v~i~~d~~ 117 (386)
T TIGR01016 92 PVNKILIEEATDI-DKEYYLSIVIDRS 117 (386)
T ss_pred EeeEEEEEECccC-CceEEEEEEEcCC
Confidence 14899999964 8999999999874
No 94
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=96.76 E-value=0.0021 Score=68.52 Aligned_cols=171 Identities=22% Similarity=0.349 Sum_probs=111.1
Q ss_pred eeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceee
Q 021495 100 VTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHEL 178 (311)
Q Consensus 100 v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m 178 (311)
+.|+ -+|+.|...-||+...+.|.++ +|-.|.+-.+++-++ +..--..++||+++.|.-.- | +-.|
T Consensus 1018 ~kilGTsP~~ID~AEnR~kFS~~Ld~i-------~v~Qp~Wkelt~~~e---A~~F~~~VgYP~lvRPSYVL-S--GaAM 1084 (1435)
T KOG0370|consen 1018 VKILGTSPEMIDSAENRFKFSRMLDSI-------GVDQPAWKELTSLEE---AKKFAEKVGYPVLVRPSYVL-S--GAAM 1084 (1435)
T ss_pred CeEecCChHhhhhhhhHHHHHHHHHHc-------CCCchhhhhhccHHH---HHHHHHhcCCceEeccccee-c--chhh
Confidence 4443 4678999999999999999886 677788877643111 11124679999999996522 1 3459
Q ss_pred EEEcCccccccC---------CCCeEEEecccCCCeEEEEEEECCEEE-EEEEecCCCCccccccccceeeeeccccccc
Q 021495 179 FLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAA 248 (311)
Q Consensus 179 ~lv~~~~~L~~l---------~~P~vvQEfInH~G~~~KVyVVGd~v~-~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~ 248 (311)
.+++++++|+.+ +.|+|+-.||+ +++++-|=.|+-.=. ++.--|.. +-++|
T Consensus 1085 nv~~~~~dl~~~L~~A~~vs~dhPVVisKfie-~AkEidvDAVa~~G~~~~haiSEH------------------vEnAG 1145 (1435)
T KOG0370|consen 1085 NVVYSESDLKSYLEQASAVSPDHPVVISKFIE-GAKEIDVDAVASDGKVLVHAISEH------------------VENAG 1145 (1435)
T ss_pred hhhhcHHHHHHHHHHHhhcCCCCCEEhHHhhc-ccceechhhhccCCeEEEEehhhh------------------hhccc
Confidence 999999999763 67999999998 577777765543311 12222211 11111
Q ss_pred ccCCCCCC-CCCCCCCCC--hHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEEecC
Q 021495 249 ASADDADL-DPGIAELPP--RPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 249 ~~a~~~~~-~p~~~~~p~--~~~~~~lA~~l~~~LGL~l-fG~Dvi~~~~tg~~~~ViDVNy 306 (311)
--+-++.+ -| +..+.+ .+.+++++.++.++|..+- |++-+|..+ |.+-|||-|.
T Consensus 1146 VHSGDAtlv~P-pq~l~~~t~~rik~i~~ki~~a~~itGPfN~Q~i~k~---n~lkVIECN~ 1203 (1435)
T KOG0370|consen 1146 VHSGDATLVLP-PQDLSADTLERIKDIAAKVAKALKITGPFNMQIIAKD---NELKVIECNV 1203 (1435)
T ss_pred ccCCceeEeCC-chhcCHHHHHHHHHHHHHHHHHhcccCCceEEEEecC---CeEEEEEeee
Confidence 11111111 11 111211 3568899999999999874 688989863 4689999984
No 95
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=96.42 E-value=0.0046 Score=60.72 Aligned_cols=91 Identities=21% Similarity=0.125 Sum_probs=62.2
Q ss_pred HHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCC-CCcEEEeeCcC-CCCCcceeeEEEcCccccccC---
Q 021495 116 QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGL-KLPLVAKPLVV-DGSAKSHELFLAYDRFSLSEL--- 190 (311)
Q Consensus 116 ~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l-~fP~VvKP~~a-~GS~~sh~m~lv~~~~~L~~l--- 190 (311)
+.+-+.|+. .+|++|++.++.+. ++..+ ....+ +||+|+||..- +|.++++++.+..+++++.+.
T Consensus 6 ~~ak~lL~~-------~gIpvp~~~~~~~~-~ea~~--~a~~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~ 75 (388)
T PRK00696 6 YQAKELFAK-------YGVPVPRGIVATTP-EEAVE--AAEELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQ 75 (388)
T ss_pred HHHHHHHHH-------cCCCCCCCeeeCCH-HHHHH--HHHHcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHH
Confidence 344455555 48999999988532 22222 22357 89999999742 344567899999887766431
Q ss_pred ---C-----------C---CeEEEecccCCCeEEEEEEECCEEE
Q 021495 191 ---E-----------P---PMLLQEFVNHGGILFKIYIIGETIK 217 (311)
Q Consensus 191 ---~-----------~---P~vvQEfInH~G~~~KVyVVGd~v~ 217 (311)
. . .+++|+|+++ |+++-|.+..|..+
T Consensus 76 i~~~~~~~~~~~~~g~~~~gvlVe~~~~~-~~E~~vg~~~D~~f 118 (388)
T PRK00696 76 ILGMTLVTHQTGPKGQPVNKVLVEEGADI-AKEYYLSIVLDRAT 118 (388)
T ss_pred hhccceeeeccCCCCCEEeEEEEEeccCC-CceEEEEEEEcCCC
Confidence 0 1 2899999964 89999999988754
No 96
>KOG2156 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.41 E-value=0.005 Score=62.09 Aligned_cols=74 Identities=15% Similarity=0.348 Sum_probs=46.6
Q ss_pred ccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccCCCCeEEEecccC------CCeEEE
Q 021495 135 RVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNH------GGILFK 208 (311)
Q Consensus 135 ~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l~~P~vvQEfInH------~G~~~K 208 (311)
..|++..+-.+.+++.+....-.-+. +||||-. |+.+-++.++.....+.. ..|+++|+||.. +-++.+
T Consensus 282 fmPrtyilP~d~e~lrk~w~~nasr~-wIVkppa---saRg~gIrv~~kw~q~pk-~rpLvvQ~yieRP~ling~KFDlr 356 (662)
T KOG2156|consen 282 FMPRTYILPADREELRKYWEKNASRL-WIVKPPA---SARGIGIRVINKWSQFPK-DRPLVVQKYIERPLLINGSKFDLR 356 (662)
T ss_pred ccceeeeccccHHHHHHHHhhCcccc-EEecCcc---cccCcceEeccchhhCCC-cccHHHHHHhhcceeecCcceeEE
Confidence 46777777444444444433322233 8888865 345567777777665553 568999999753 457888
Q ss_pred EEEEC
Q 021495 209 IYIIG 213 (311)
Q Consensus 209 VyVVG 213 (311)
+||+=
T Consensus 357 lYv~v 361 (662)
T KOG2156|consen 357 LYVVV 361 (662)
T ss_pred EEEEE
Confidence 88763
No 97
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=94.94 E-value=0.061 Score=54.00 Aligned_cols=147 Identities=20% Similarity=0.317 Sum_probs=88.8
Q ss_pred HHHHHHHhCCCeEEEeeCCCCCCC------CC-CccEEEEecCChhH-------HHHHHHHHHhCCCeeeeCchhHHHHh
Q 021495 47 KLEILARNKGISFVAIDQNRPLSD------QG-PFDVVLHKLSGMEW-------CKIIEDYRQKHPEVTILDPPDAIKHL 112 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~------qg-p~DviLhK~t~~~~-------~~~l~~y~~~hP~v~ViDp~~ai~~l 112 (311)
.|.++.+++|++.+-.|++.---. +| |+|+|-=++...+. ...+++|.. ..|++++|+. .+.+
T Consensus 204 ~f~~~f~~~G~~~vI~d~~~L~y~~g~L~~~~~~ID~VyRR~Vt~e~l~~~d~~~~li~Ay~~--~av~~vgsfr-s~l~ 280 (445)
T PF14403_consen 204 VFQRLFEEHGYDCVICDPRDLEYRDGRLYAGGRPIDAVYRRFVTSELLERYDEVQPLIQAYRD--GAVCMVGSFR-SQLL 280 (445)
T ss_pred HHHHHHHHcCCceEecChHHceecCCEEEECCEeeehhhHhhhhHHhhhccccchHHHHHHhc--CCeEEecchh-hhhh
Confidence 488899999999999999752212 23 78888777655322 334566654 4799999964 5678
Q ss_pred cCHHHHHHHHHhcc---ccC-CCC--ccccCcEEEEcc-------CCCCcch-hhHhcCCCCcEEEeeCcCCCCCcceee
Q 021495 113 HNRQSMLQDVADLN---LSD-CNG--KVRVPRQMVITK-------DSLSIPD-QVFEAGLKLPLVAKPLVVDGSAKSHEL 178 (311)
Q Consensus 113 ~dR~~~l~~l~~l~---~~~-~~~--~i~~P~~~~i~~-------~~~~~~~-~l~~~~l~fP~VvKP~~a~GS~~sh~m 178 (311)
+||..+.-+-.... ++. ... .=-+|-+..++. ...++.+ .+.... -+|+||.-+.|+ |++
T Consensus 281 hnK~iFaiL~d~~~~~~Lt~ee~~~I~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a~r~---~lVLKP~D~Ygg---~GV 354 (445)
T PF14403_consen 281 HNKIIFAILHDERTTAFLTAEERAFIRRHVPWTRLLTAGRTTYQGEDVDLVEFAIANRD---RLVLKPNDEYGG---KGV 354 (445)
T ss_pred hhhHHHHHhcChhhcccCCHHHHHHHHHhCCceEEEcCccccccccchhHHHHHHhchh---cEEeccccccCC---CCe
Confidence 99975432221111 110 000 114788888854 1122222 122223 689999986654 777
Q ss_pred EEEcC--cccccc-----CCCCeEEEecccC
Q 021495 179 FLAYD--RFSLSE-----LEPPMLLQEFVNH 202 (311)
Q Consensus 179 ~lv~~--~~~L~~-----l~~P~vvQEfInH 202 (311)
++=-+ ++++++ ++.|+|+|||+.-
T Consensus 355 ~~G~e~~~eeW~~~l~~a~~~~yilQe~v~~ 385 (445)
T PF14403_consen 355 YIGWETSPEEWEAALEEAAREPYILQEYVRP 385 (445)
T ss_pred EECCcCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 76433 344433 4779999999964
No 98
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=94.64 E-value=1.5 Score=36.73 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=65.0
Q ss_pred cEEEeeCcCCCCCcceeeEEEcCcccccc---C--CCCeEEEecccCCCeEEEEEEECCEEEEEEEecCCCCcccccccc
Q 021495 161 PLVAKPLVVDGSAKSHELFLAYDRFSLSE---L--EPPMLLQEFVNHGGILFKIYIIGETIKVVRRFSLPNVSKRELAKV 235 (311)
Q Consensus 161 P~VvKP~~a~GS~~sh~m~lv~~~~~L~~---l--~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~ 235 (311)
|+-+||.. .+ +.-.=.++...+.|.. + +.++++.|.++ =..+||+||+.+++....+-. ++
T Consensus 3 ~~FiKP~~--~~-K~F~g~V~~~~~dl~~~~~~~~~~~V~vSe~v~-~~~E~R~fi~~g~vv~~s~Y~------~~---- 68 (130)
T PF14243_consen 3 PVFIKPPD--DD-KSFTGRVFRSGEDLIGFGSLDPDTPVLVSEVVE-IESEWRCFIVDGEVVTGSPYR------GD---- 68 (130)
T ss_pred CeEeCCCC--CC-CcceeEEEcchhhccccCCCCCCceEEEeceEe-eeeeEEEEEECCEEEEEeecC------CC----
Confidence 77888876 23 2222223333455443 2 66899999996 478999999999997654331 00
Q ss_pred ceeeeecccccccccCCCCCCCCCCCCCCChHHHHHHHHHHH-HHhCCcEeEEEEEEeCCCCCeEEEEEecCC
Q 021495 236 VSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERLARELR-HRLGLRLFNIDMIREHGMRDVFYVIDINYF 307 (311)
Q Consensus 236 ~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~lA~~l~-~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyf 307 (311)
....+ +.+.+....+.+. ....-.-|.+||=+.. +| ..+|||+|-+
T Consensus 69 ------------------~~~~~------~~~~~~~~~~~~~~~~~~p~~~vlDvg~~~-~G-~~~lVE~N~~ 115 (130)
T PF14243_consen 69 ------------------WDLEP------DPDVVAFAIQALAAAWTLPPAYVLDVGVTD-DG-GWALVEANDG 115 (130)
T ss_pred ------------------cccCC------CHHHHHHHHHHHHhcccCCCeEEEEEEEeC-CC-CEEEEEecCc
Confidence 01111 1233333333333 1556777889998875 45 5899999975
No 99
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=93.57 E-value=0.75 Score=51.97 Aligned_cols=190 Identities=11% Similarity=0.181 Sum_probs=117.3
Q ss_pred HHHHHHhCCCeeeeCchh-HHHHhcCHHHHHHHHHhccccC---CCCccccCcEE------EEcc---------CCCCcc
Q 021495 90 IEDYRQKHPEVTILDPPD-AIKHLHNRQSMLQDVADLNLSD---CNGKVRVPRQM------VITK---------DSLSIP 150 (311)
Q Consensus 90 l~~y~~~hP~v~ViDp~~-ai~~l~dR~~~l~~l~~l~~~~---~~~~i~~P~~~------~i~~---------~~~~~~ 150 (311)
|-+.+.++ +++.|-||. |+.-|.||....-.-+.++.+. ...+|.++... .+.. +.++-+
T Consensus 154 LPe~L~~~-~IiFiGPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~~~~~~~~v~Vpedly~Kacv~~~eegL 232 (2196)
T KOG0368|consen 154 LPERLSAN-GIIFIGPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEHIEDKTNLVSVPEDLYEKACVRNVEEGL 232 (2196)
T ss_pred hHHHHHhc-CcEEECCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeeeecccCCeEecCHHHhhhhhcCCHHHHH
Confidence 33444444 488898875 6778999997666555555431 12345444332 2211 111111
Q ss_pred hhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC---------CCCeEEEecccCCCeEEEEEEECCEEEEEEE
Q 021495 151 DQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL---------EPPMLLQEFVNHGGILFKIYIIGETIKVVRR 221 (311)
Q Consensus 151 ~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l---------~~P~vvQEfInH~G~~~KVyVVGd~v~~~~R 221 (311)
+ +...++||+.+|-..++|. -++--+.|.++++.+ +.|+.+-.-.. ++|-+-|-+++|++--+.-
T Consensus 233 e--aae~IGfPvMIKASEGGGG---KGIRkv~n~ddF~~lf~qv~~EvPGSPIFlMK~a~-~ARHlEVQlLaDqYGn~Is 306 (2196)
T KOG0368|consen 233 E--AAEKIGFPVMIKASEGGGG---KGIRKVENEDDFKALFKQVQNEVPGSPIFLMKLAD-QARHLEVQLLADQYGNVIS 306 (2196)
T ss_pred H--HHHhcCCceEEEeccCCCC---cceeeccchHHHHHHHHHHHhhCCCCceeeeeccc-CcceeeeehhhhhcCCEeE
Confidence 1 2356999999999886654 567788999988775 56888877776 4888999999988721100
Q ss_pred ecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCC---ChHHHHHHHHHHHHHhCCcEeE-EEEEEeCCCCC
Q 021495 222 FSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELP---PRPLLERLARELRHRLGLRLFN-IDMIREHGMRD 297 (311)
Q Consensus 222 ~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p---~~~~~~~lA~~l~~~LGL~lfG-~Dvi~~~~tg~ 297 (311)
-.-.| +.+. .-++ .-.+..++.+- ....|++-|.+|.+..|---+| +..+...++|
T Consensus 307 LfgRD---CSiQ------RRhQ----------KIIEEAPatIap~etf~~Me~~AvrLak~VGYvSAGTVEYLYsp~d~- 366 (2196)
T KOG0368|consen 307 LFGRD---CSIQ------RRHQ----------KIIEEAPATIAPPETFKKMEQAAVRLAKLVGYVSAGTVEYLYSPDDG- 366 (2196)
T ss_pred eeccc---chHH------HHHH----------HHHhhCCcccCCHHHHHHHHHHHHHHHHhhcceecceEEEEEecCCC-
Confidence 00000 0000 0000 00111122111 1467999999999999999999 9999987666
Q ss_pred eEEEEEecC
Q 021495 298 VFYVIDINY 306 (311)
Q Consensus 298 ~~~ViDVNy 306 (311)
+||++|.|-
T Consensus 367 ~fyFLELNP 375 (2196)
T KOG0368|consen 367 EYYFLELNP 375 (2196)
T ss_pred cEEEEecCc
Confidence 899999994
No 100
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=93.41 E-value=0.42 Score=45.71 Aligned_cols=90 Identities=17% Similarity=0.318 Sum_probs=60.5
Q ss_pred CCCeEEEeccc-CCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCChHHH
Q 021495 191 EPPMLLQEFVN-HGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLL 269 (311)
Q Consensus 191 ~~P~vvQEfIn-H~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~ 269 (311)
..-+++.+|+| |.+.+|||||-+.+++++--+-+ +.- +.+.. ... .....+
T Consensus 149 ~~~LvLrkw~~l~p~~EFRcFV~~~~LiaISQr~~-~~~-------------~~L~~---------~~~-----~I~~~I 200 (299)
T PF07065_consen 149 PYELVLRKWVNLNPSMEFRCFVRNRKLIAISQRDL-NYY-------------DFLEE---------LKE-----EIRSKI 200 (299)
T ss_pred ceEEEEeccccCCccceEEEEEECCEEEEEecccc-ccc-------------HHHHH---------HHH-----HHHHHH
Confidence 33489999999 56999999999999987633323 321 00000 000 002334
Q ss_pred HHHH-HHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 270 ERLA-RELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 270 ~~lA-~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
.+.. ..+...+.+.=|-|||.++... ++.++||+|.|-+
T Consensus 201 ~~F~~~~I~~~~~~~~~v~DVyi~~~~-~~v~LID~NPf~~ 240 (299)
T PF07065_consen 201 QEFFEEHIKPKFPLDNYVFDVYITRDK-DKVWLIDFNPFGP 240 (299)
T ss_pred HHHHHHHHHhhCCCCCEEEEEEEcCCC-CeEEEEEecCCcc
Confidence 4444 5678889999999999998753 3799999999864
No 101
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=90.68 E-value=0.08 Score=48.42 Aligned_cols=93 Identities=16% Similarity=0.134 Sum_probs=46.0
Q ss_pred hcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcC---CCCCcceeeEE-EcCcccc
Q 021495 112 LHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVV---DGSAKSHELFL-AYDRFSL 187 (311)
Q Consensus 112 l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a---~GS~~sh~m~l-v~~~~~L 187 (311)
.++-....+.|+. .||++|++..+.+.++ ..+ ....++||+++|-... |=| +..++.+ +.+++++
T Consensus 9 ~L~e~e~~~lL~~-------yGI~~~~~~~~~~~~e-a~~--~a~~ig~PvvlKi~sp~i~HKs-d~GgV~L~l~~~~~v 77 (222)
T PF13549_consen 9 WLTEAEAKELLAA-------YGIPVPPTRLVTSAEE-AVA--AAEEIGFPVVLKIVSPDIAHKS-DVGGVRLNLNSPEEV 77 (222)
T ss_dssp EE-HHHHHHHHHT-------TT------EEESSHHH-HHH--HHHHH-SSEEEEEE-TT---HH-HHT-EEEEE-SHHHH
T ss_pred ccCHHHHHHHHHH-------cCcCCCCeeEeCCHHH-HHH--HHHHhCCCEEEEEecCCCCcCC-CCCcEEECCCCHHHH
Confidence 3444556666765 4999999999853221 111 2357899999997643 222 3345666 6677766
Q ss_pred ccC-----------C-----CCeEEEecccCCCeEEEEEEECCE
Q 021495 188 SEL-----------E-----PPMLLQEFVNHGGILFKIYIIGET 215 (311)
Q Consensus 188 ~~l-----------~-----~P~vvQEfInH~G~~~KVyVVGd~ 215 (311)
++. . ..+++|+.+.++|.++-|.+.-|-
T Consensus 78 ~~a~~~l~~~~~~~~p~~~~~gvlVq~m~~~~g~El~vG~~~Dp 121 (222)
T PF13549_consen 78 REAFERLRERVAAHHPGARIDGVLVQEMAPSGGRELIVGVRRDP 121 (222)
T ss_dssp HHHHHHHHHHHHHH-TT----EEEEEE------EEEEEEEEEET
T ss_pred HHHHHHHHHHHHHhCCCCccceEEEEEcccCCcEEEEEEEEECC
Confidence 441 1 248999999878999988877554
No 102
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=89.87 E-value=18 Score=36.00 Aligned_cols=162 Identities=19% Similarity=0.233 Sum_probs=91.5
Q ss_pred HHHHHHhCCCeEEEeeCCCC-CCCCCCc--c---E---EEEecCChhHHHH--HHHHHHhCCCeeeeCchhHHHHhcCHH
Q 021495 48 LEILARNKGISFVAIDQNRP-LSDQGPF--D---V---VLHKLSGMEWCKI--IEDYRQKHPEVTILDPPDAIKHLHNRQ 116 (311)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~p-l~~qgp~--D---v---iLhK~t~~~~~~~--l~~y~~~hP~v~ViDp~~ai~~l~dR~ 116 (311)
|...|++.|+....+++..- +.+.|.| | . .|=|+..-+|... ....+. +.++.+|+|+-++ .+.||.
T Consensus 196 L~~~a~~AG~~t~~~~i~di~~~~~g~f~vD~~g~~I~~lfKlyPwE~~~~e~~~~~l~-~~~~~~ieP~wk~-llsnKa 273 (397)
T PHA02117 196 LAETATEAGAVVKFFDIQEIQLSDRGPFFVDGEDAPIDMCFKLYPWEWMMEDEFSAEIL-VSQTRFIEPAWKM-MLSNKG 273 (397)
T ss_pred HHHHHHHcCCceEEeehheEEEcCCCceEECCCCCEeeeeeecccHHHHhhCcchhhhh-hCCcEEechhHHh-HhccHH
Confidence 67888999988777666542 2233333 2 1 2357776555432 111122 3579999998665 447776
Q ss_pred HHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCC-CcEEEeeCcCCCCCcceeeEEEcCcccccc----C-
Q 021495 117 SMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLVVDGSAKSHELFLAYDRFSLSE----L- 190 (311)
Q Consensus 117 ~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~-fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~----l- 190 (311)
.+ ..|=++. +. ..--.|.+.. .+..... ...+. -..|.||+. |- ++-++.|+.+...+.+ +
T Consensus 274 lL-alLW~l~--p~-hp~LLpay~~----~d~~~~~--~~~~~~~~yV~KPi~--gR-EG~nV~i~~~g~~~~~~~g~y~ 340 (397)
T PHA02117 274 LL-ALLYERY--PD-CPWLVPAYVE----DDFDREN--LFTLENPKYVSKPLL--SR-EGNNIHIFEYGGESEDTDGNYA 340 (397)
T ss_pred HH-HHHHHhc--CC-Cccccccccc----ccccccc--hhccccCCEEeccCC--Cc-CCCCEEEEECCeEEeccCCCCC
Confidence 53 3333321 11 1223333221 1100000 00011 149999999 66 6788999866433332 2
Q ss_pred CCCeEEEecccC---CC-e-EEEEEEECCEEEE-EEEecC
Q 021495 191 EPPMLLQEFVNH---GG-I-LFKIYIIGETIKV-VRRFSL 224 (311)
Q Consensus 191 ~~P~vvQEfInH---~G-~-~~KVyVVGd~v~~-~~R~Sl 224 (311)
+.++|.|+|++= +| . ++=+|+|||+... ..|.+-
T Consensus 341 ~~~~IyQ~~~~Lp~f~g~~~~iGsw~vg~~~aGlgiRe~~ 380 (397)
T PHA02117 341 EEPRVVQQLIEWGRFDGCYPMIGVWMVGSEAAGLCIREDD 380 (397)
T ss_pred CCCeEEEEccCCcccCCcEEEEEEEEECCEeeEEEEecCC
Confidence 568999999983 23 3 6899999998775 477763
No 103
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.74 E-value=0.19 Score=51.10 Aligned_cols=56 Identities=13% Similarity=0.286 Sum_probs=42.1
Q ss_pred CCCCcEEEeeCcCCCCCcceeeEEEcCccccccC------------CCCeEEEecccCC----Ce--EEEEEEECCE
Q 021495 157 GLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL------------EPPMLLQEFVNHG----GI--LFKIYIIGET 215 (311)
Q Consensus 157 ~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l------------~~P~vvQEfInH~----G~--~~KVyVVGd~ 215 (311)
+=..++|+||.. .+.+.++.++.+.+.+... +..+++|-||+++ |. ++|.||+=.+
T Consensus 197 ~~~~~wIvKP~~---~srg~GI~~~~~l~~l~~~~~~~~~~~s~~~~~~~vv~~yi~~plli~~~KfDlR~~vlvt~ 270 (497)
T KOG2157|consen 197 SERSWWIVKPAS---KSRGRGIFLFNTLSDLQAIVDSFDSFISENNDEGYVVSAYIDRPLLIGGHKFDLRQYVLVTH 270 (497)
T ss_pred cccceEEecccc---ccccceeEEecchhhhhhhhhcccccccccccccceeeeeccCccccCCceeeeeEEEEeec
Confidence 557899999954 4578999999888776543 4569999999985 44 4588888655
No 104
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=81.58 E-value=2.4 Score=41.94 Aligned_cols=81 Identities=12% Similarity=-0.010 Sum_probs=55.7
Q ss_pred CccccCcEEEEccCCCCcchhhHhcCCCCc-EEEeeCc-CCCCCcceeeEEEcCccccccC-----C---------C---
Q 021495 132 GKVRVPRQMVITKDSLSIPDQVFEAGLKLP-LVAKPLV-VDGSAKSHELFLAYDRFSLSEL-----E---------P--- 192 (311)
Q Consensus 132 ~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP-~VvKP~~-a~GS~~sh~m~lv~~~~~L~~l-----~---------~--- 192 (311)
.+|++|+..++.+..+ ..+ ....++|| +|+|..+ ++|-.++.++.+..+.+++.+. + +
T Consensus 15 yGIpvp~~~~~~~~~e-a~~--~a~~lg~p~~VvK~qv~~g~Rgk~GGV~l~~~~~e~~~a~~~ll~~~~~~~~~~~~g~ 91 (392)
T PRK14046 15 FGVAVPRGALAYSPEQ-AVY--RARELGGWHWVVKAQIHSGARGKAGGIKLCRTYNEVRDAAEDLLGKKLVTHQTGPEGK 91 (392)
T ss_pred cCCCCCCceEECCHHH-HHH--HHHHcCCCcEEEEeeeccCCCCcCCeEEEECCHHHHHHHHHHHhcchhhhhccCCCCC
Confidence 4899999998853222 212 23568995 5999854 4455678889988888776441 1 1
Q ss_pred ---CeEEEecccCCCeEEEEEEECCEE
Q 021495 193 ---PMLLQEFVNHGGILFKIYIIGETI 216 (311)
Q Consensus 193 ---P~vvQEfInH~G~~~KVyVVGd~v 216 (311)
-+++|+++++ +++|-+.+.=|+.
T Consensus 92 ~v~~vlVe~~~~~-~~E~ylgi~~D~~ 117 (392)
T PRK14046 92 PVQRVYVETADPI-ERELYLGFVLDRK 117 (392)
T ss_pred eeeeEEEEEecCC-CcEEEEEEEECCC
Confidence 2899999985 6788887776664
No 105
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=81.47 E-value=3.3 Score=37.35 Aligned_cols=70 Identities=27% Similarity=0.299 Sum_probs=38.8
Q ss_pred CccccCcEEEEccCCCCcchhhHhcCCCC-cEEEeeCc-CCCCCcceeeEEEcCccccccC---------C---------
Q 021495 132 GKVRVPRQMVITKDSLSIPDQVFEAGLKL-PLVAKPLV-VDGSAKSHELFLAYDRFSLSEL---------E--------- 191 (311)
Q Consensus 132 ~~i~~P~~~~i~~~~~~~~~~l~~~~l~f-P~VvKP~~-a~GS~~sh~m~lv~~~~~L~~l---------~--------- 191 (311)
.+|++|++.++.+. ++..+. ...++. ++|+|+.+ ++|--++-++-++.++++..+. .
T Consensus 14 ~gi~vp~g~~a~s~-eea~~~--~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~T~Qtg~~G~ 90 (202)
T PF08442_consen 14 YGIPVPRGVVATSP-EEAREA--AKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLKTKQTGPKGE 90 (202)
T ss_dssp TT----SEEEESSH-HHHHHH--HHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE-TTSTTTEE
T ss_pred cCCCCCCeeecCCH-HHHHHH--HHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceEeeecCCCCC
Confidence 48999999999642 222222 223444 68999954 4555667889999998776542 1
Q ss_pred --CCeEEEecccCCC
Q 021495 192 --PPMLLQEFVNHGG 204 (311)
Q Consensus 192 --~P~vvQEfInH~G 204 (311)
.-++++|+++|..
T Consensus 91 ~v~~vlvee~v~~~~ 105 (202)
T PF08442_consen 91 KVNKVLVEEFVDIKR 105 (202)
T ss_dssp EE--EEEEE---CCE
T ss_pred EeeEEEEEecCccCc
Confidence 1278999998854
No 106
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=67.47 E-value=6.1 Score=38.22 Aligned_cols=64 Identities=16% Similarity=0.259 Sum_probs=42.6
Q ss_pred HHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccccccC-----
Q 021495 116 QSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFSLSEL----- 190 (311)
Q Consensus 116 ~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l----- 190 (311)
..-+..|.+ ++|+.|+-+. ++++ +.-|+|||...|-| +++-.++.+.+++.+.
T Consensus 126 ~~~~~lLek-------Agi~~P~~~~---~Pee---------Idr~VIVK~pgAkg---gRGyFiA~s~eef~ek~e~l~ 183 (361)
T COG1759 126 KLEYKLLEK-------AGLRIPKKYK---SPEE---------IDRPVIVKLPGAKG---GRGYFIASSPEEFYEKAERLL 183 (361)
T ss_pred hhHHHHHHH-------cCCCCCcccC---ChHH---------cCCceEEecCCccC---CceEEEEcCHHHHHHHHHHHH
Confidence 344455555 4888997542 2332 33499999987776 6899999999887541
Q ss_pred CC---------CeEEEeccc
Q 021495 191 EP---------PMLLQEFVN 201 (311)
Q Consensus 191 ~~---------P~vvQEfIn 201 (311)
+. -..+||||-
T Consensus 184 ~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 184 KRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred HcCCcchhhhhhceeeEEee
Confidence 21 367888874
No 107
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=66.89 E-value=10 Score=37.42 Aligned_cols=81 Identities=23% Similarity=0.199 Sum_probs=54.6
Q ss_pred CccccCcEEEEccCCCCcchhhHhcCCC-CcEEEeeCc-CCCCCcceeeEEEcCcccccc-----CC----C--------
Q 021495 132 GKVRVPRQMVITKDSLSIPDQVFEAGLK-LPLVAKPLV-VDGSAKSHELFLAYDRFSLSE-----LE----P-------- 192 (311)
Q Consensus 132 ~~i~~P~~~~i~~~~~~~~~~l~~~~l~-fP~VvKP~~-a~GS~~sh~m~lv~~~~~L~~-----l~----~-------- 192 (311)
.+||+|+..++.+.++ ..+ ....++ .|+|+|+.+ ++|--++-++-++.+.++..+ |. .
T Consensus 15 ~GiPvp~g~v~~s~ee-a~~--~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~ 91 (387)
T COG0045 15 YGIPVPPGYVATSPEE-AEE--AAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVN 91 (387)
T ss_pred cCCCCCCceeeeCHHH-HHH--HHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceee
Confidence 4899999998854322 111 223444 799999965 445556778999999987654 22 1
Q ss_pred CeEEEecccCCCeEEEEEEECCE
Q 021495 193 PMLLQEFVNHGGILFKIYIIGET 215 (311)
Q Consensus 193 P~vvQEfInH~G~~~KVyVVGd~ 215 (311)
-++++|++||--++|=+-++=|+
T Consensus 92 ~vlvee~~~~~~~E~Ylsiv~DR 114 (387)
T COG0045 92 KVLVEEAVDIIKKEYYLSIVLDR 114 (387)
T ss_pred EEEEEecCCCccceEEEEEEEEc
Confidence 28999999977656666655454
No 108
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.10 E-value=2.9 Score=42.23 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=36.0
Q ss_pred CCcEEEeeCcCCCCCcceeeEEEcCccccccCCCCeEEEecccC-------CCeEEEEEEECCE
Q 021495 159 KLPLVAKPLVVDGSAKSHELFLAYDRFSLSELEPPMLLQEFVNH-------GGILFKIYIIGET 215 (311)
Q Consensus 159 ~fP~VvKP~~a~GS~~sh~m~lv~~~~~L~~l~~P~vvQEfInH-------~G~~~KVyVVGd~ 215 (311)
+-|+||||..++ .+.+++++.+......++. .++||||-. =-.+++||++=-.
T Consensus 226 KrtfivkpDsga---qg~giylisDir~~g~~Q~-~~vQeyV~~pLli~dkyKfd~rvy~likS 285 (565)
T KOG2158|consen 226 KRTFIVKPDSGA---QGSGIYLISDIREKGEYQN-KKVQEYVTYPLLISDKYKFDQRVYSLIKS 285 (565)
T ss_pred cccEEECCCCCC---CCcceeeechhhhhhHHHH-HHHHHHhcccccccccceeeeeeeeeeec
Confidence 349999997633 5678999966655444443 678888843 2467888887433
No 109
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=53.09 E-value=57 Score=27.52 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=48.0
Q ss_pred CccEEEEEEeCchhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCC------------ccEEEEecCChhHHHHHHHH
Q 021495 26 PERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGP------------FDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 26 ~~~~~Vgy~~~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp------------~DviLhK~t~~~~~~~l~~y 93 (311)
-...+|+..+.+.=-+-. -+|...+.+.|...+.++.+..-...|+ +|+|+-|.........+.
T Consensus 37 l~gk~v~~lF~e~StRTR--~SFe~A~~~LGg~~i~~~~~~s~~~k~Esl~Dtar~ls~~~D~iv~R~~~~~~~~~~a-- 112 (142)
T PF02729_consen 37 LKGKTVALLFFEPSTRTR--LSFEAAANRLGGHVIYLDPSTSSLGKGESLEDTARVLSRYVDAIVIRHPSHGALEELA-- 112 (142)
T ss_dssp TTTCEEEEEESS--HHHH--HHHHHHHHHTTCEEEEEETTTSSTTTSSEHHHHHHHHHHHCSEEEEEESSHHHHHHHH--
T ss_pred CCCCEEEEEecCCCchhh--hhHHHhhhcceeEEEEECcccccCcCCCCHHHHHHHHHHhhheEEEEeccchHHHHHH--
Confidence 345666665544322111 1467789999999999996543222222 899999988765544444
Q ss_pred HHhCCCeeeeCchh
Q 021495 94 RQKHPEVTILDPPD 107 (311)
Q Consensus 94 ~~~hP~v~ViDp~~ 107 (311)
++..+||||=.+
T Consensus 113 --~~~~vPVINa~~ 124 (142)
T PF02729_consen 113 --EHSSVPVINAGD 124 (142)
T ss_dssp --HHCSSEEEEEEE
T ss_pred --HhccCCeEcCcC
Confidence 345899999544
No 110
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=50.95 E-value=9.8 Score=37.79 Aligned_cols=68 Identities=21% Similarity=0.394 Sum_probs=41.0
Q ss_pred EEeCchhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChh---HHHHHHHHHHhCCCeee
Q 021495 33 YALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGME---WCKIIEDYRQKHPEVTI 102 (311)
Q Consensus 33 y~~~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~---~~~~l~~y~~~hP~v~V 102 (311)
..++....+.++...+.++.++.|++++++|++..+.+-+.-..= ...... .-+.+++-.++||++.+
T Consensus 160 LD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~--~~~~~~~~~~y~l~~~L~~~~P~v~i 230 (394)
T PF02065_consen 160 LDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLP--EGYHRYVLGLYRLLDRLRARFPDVLI 230 (394)
T ss_dssp B-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS---GHHHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred EcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCch--HHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 445555678888888889999999999999999987753311110 111100 12346666778998775
No 111
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=48.79 E-value=19 Score=34.93 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=17.6
Q ss_pred CCcEeEEEEEEeCCCCCeEEEEEecC
Q 021495 281 GLRLFNIDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 281 GL~lfG~Dvi~~~~tg~~~~ViDVNy 306 (311)
-+.++|+|++++. +| +++|||.|.
T Consensus 67 ~~~~~g~Dl~r~~-dG-~w~VleDn~ 90 (330)
T PF04174_consen 67 RLHFYGADLVRDP-DG-RWRVLEDNT 90 (330)
T ss_dssp S-SEEEEEEEE-S-SS--EEEEEEE-
T ss_pred EEEEEEEeeeECC-CC-CEEEEEecC
Confidence 4889999999986 46 799999996
No 112
>PLN02235 ATP citrate (pro-S)-lyase
Probab=46.84 E-value=28 Score=34.94 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=47.4
Q ss_pred CccccCcEEEE-ccCCCCcchhhHh-cCCCC-cEEEeeCcC-CCCCcceeeEEEcCccccccC-----CC----------
Q 021495 132 GKVRVPRQMVI-TKDSLSIPDQVFE-AGLKL-PLVAKPLVV-DGSAKSHELFLAYDRFSLSEL-----EP---------- 192 (311)
Q Consensus 132 ~~i~~P~~~~i-~~~~~~~~~~l~~-~~l~f-P~VvKP~~a-~GS~~sh~m~lv~~~~~L~~l-----~~---------- 192 (311)
.+|++|+..++ .+. ++..+.... ..|+. ++|+|+.+- +|--++-++-++.+.++..+. +.
T Consensus 23 ~gipvP~~~v~~~~~-ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKaGGVk~~~s~~Ea~~~a~~~Lg~~l~t~g~~G~ 101 (423)
T PLN02235 23 AGIDLPIRSAQVTES-TDFNELANKEPWLSSTKLVVKPDMLFGKRGKSGLVALNLDLAQVATFVKERLGKEVEMGGCKGP 101 (423)
T ss_pred CCCCCCCCeeccCCH-HHHHHHHHhhhhhCCCcEEEEcccccCCCcccCceEEeCCHHHHHHHHHHHhCCceEecCCCcc
Confidence 58999999888 432 222121111 12555 469999763 345567789999998877542 22
Q ss_pred --CeEEEecccCCCeEEEEEEE
Q 021495 193 --PMLLQEFVNHGGILFKIYII 212 (311)
Q Consensus 193 --P~vvQEfInH~G~~~KVyVV 212 (311)
-++++|+++|. ++|=+-++
T Consensus 102 v~~vLVEe~v~i~-~E~Ylsi~ 122 (423)
T PLN02235 102 ITTFIVEPFVPHD-QEFYLSIV 122 (423)
T ss_pred EeEEEEEecCCCc-ceEEEEEE
Confidence 25777777764 44433333
No 113
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=45.37 E-value=36 Score=32.47 Aligned_cols=34 Identities=21% Similarity=0.578 Sum_probs=25.6
Q ss_pred HHHHHHhCCcE------eEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 274 RELRHRLGLRL------FNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 274 ~~l~~~LGL~l------fG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
..+.+.+|.++ =-||+++.. ++..|+||+|++=|
T Consensus 179 ~~i~~~~~~d~~~~k~~KrFDFvi~~--~~k~y~IE~NFY~~ 218 (286)
T PF04556_consen 179 SEIKEKWGIDLSVGKSEKRFDFVIKT--NKKIYLIETNFYGS 218 (286)
T ss_pred HHHHHHhCCcccCCCCceEEEEEEEc--CCEEEEEEEeeecC
Confidence 45566677777 559999964 44799999999854
No 114
>KOG0237 consensus Glycinamide ribonucleotide synthetase (GARS)/Aminoimidazole ribonucleotide synthetase (AIRS) [Nucleotide transport and metabolism]
Probab=44.50 E-value=1.7e+02 Score=30.93 Aligned_cols=139 Identities=16% Similarity=0.284 Sum_probs=87.9
Q ss_pred HHHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhCCCeeeeCchhHHHHhc-CHHHHHHHHHhc
Q 021495 47 KLEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLH-NRQSMLQDVADL 125 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~ai~~l~-dR~~~l~~l~~l 125 (311)
.++..|.+++|.+|-+-++.||.. | +.+ .| . .-++++.-|..-..++- +|.-+-..+.+
T Consensus 59 ala~f~~e~~I~lVvvGPE~PL~~-G--------l~~-----~l---~--~~gi~~FGPs~~aAqlE~sK~fsK~fm~r- 118 (788)
T KOG0237|consen 59 ALASFCKEHNINLVVVGPELPLVA-G--------LAD-----VL---R--SAGIPCFGPSKQAAQLEASKNFSKDFMHR- 118 (788)
T ss_pred HHHHHHHHcceeEEEECCchhhhh-h--------hhh-----hh---h--ccCcceeCchHHHHHhhhhHHHHHHHHHh-
Confidence 388999999999999999999874 1 111 11 1 23688888765444432 23222222333
Q ss_pred cccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcceeeEEEcCccc-ccc------------CCC
Q 021495 126 NLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSHELFLAYDRFS-LSE------------LEP 192 (311)
Q Consensus 126 ~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh~m~lv~~~~~-L~~------------l~~ 192 (311)
++|||-.+.... +++..... ....--.++|+| |+|-+-+-++.+..+.++ .+. ...
T Consensus 119 ------~~IPTA~y~~ft-~~e~a~sf-i~~~~~~~~ViK---AdGLAAGKGViv~~~~~EA~eAv~sIl~~~~fg~AG~ 187 (788)
T KOG0237|consen 119 ------HNIPTAKYKTFT-DPEEAKSF-IQSATDKALVIK---ADGLAAGKGVIVAKSKEEAFEAVDSILVKKVFGSAGK 187 (788)
T ss_pred ------cCCCcceeeeeC-CHHHHHHH-HHhCCCcceEEe---ecccccCCceEeeccHHHHHHHHHHHHhhhhhccccc
Confidence 488998887774 33322222 222223789999 788888888988888754 222 144
Q ss_pred CeEEEecccCCCeEEEEEEECCEEEE
Q 021495 193 PMLLQEFVNHGGILFKIYIIGETIKV 218 (311)
Q Consensus 193 P~vvQEfInH~G~~~KVyVVGd~v~~ 218 (311)
-+|++||.+ |-+..++..=|-..+
T Consensus 188 tvViEE~LE--GeEvS~laftDG~s~ 211 (788)
T KOG0237|consen 188 TVVIEELLE--GEEVSFLAFTDGYSV 211 (788)
T ss_pred eEehhhhcC--cceEEEEEEecCccc
Confidence 699999995 777777666555533
No 115
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=41.56 E-value=7.5 Score=42.65 Aligned_cols=228 Identities=16% Similarity=0.196 Sum_probs=121.4
Q ss_pred HHHHHHhCCCeEEEeeCCCCCC--CCCCccEE-EEecCChhHHHHHH-------------------------HHHHhCCC
Q 021495 48 LEILARNKGISFVAIDQNRPLS--DQGPFDVV-LHKLSGMEWCKIIE-------------------------DYRQKHPE 99 (311)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl~--~qgp~Dvi-LhK~t~~~~~~~l~-------------------------~y~~~hP~ 99 (311)
.++..++.|+..+.|+++.... ++|-.|-+ .-..|.+...+.+. .-+-+.++
T Consensus 403 AiKAlkEe~i~TiLiNPNIAtvQts~~lAD~vyflpvT~~~vt~vi~~erPd~il~tfggqtaLncgvel~k~gvf~~~~ 482 (1435)
T KOG0370|consen 403 AIKALKEENIFTILINPNIATVQTSKGLADKVYFLPVTPEYVTKVIKAERPDGILLTFGGQTALNCGVELDKAGVFAQYG 482 (1435)
T ss_pred HHHhhhhcccEEEEECCcccccccccccceEEEEeecCHHHHHHHHHhhCCCeEEEecCCccccccceeeeecccccccc
Confidence 6788899999999999986443 24545533 23333321110000 00112244
Q ss_pred eeee-CchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchh-hHhcCCCCcEEEeeCcCCCCCccee
Q 021495 100 VTIL-DPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQ-VFEAGLKLPLVAKPLVVDGSAKSHE 177 (311)
Q Consensus 100 v~Vi-Dp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~-l~~~~l~fP~VvKP~~a~GS~~sh~ 177 (311)
+.|+ -|.+.+...-||....+.+.+++ ..+-++...++ +.+. -+...++||+|+....|-|.-+|
T Consensus 483 vkvLgt~i~ti~ttedr~lfa~am~ei~-------e~ia~s~a~~s----ie~al~aae~l~ypvivRaayalgglgS-- 549 (1435)
T KOG0370|consen 483 VKVLGTPIQTIITTEDRDLFARALNEIN-------EKIAPSEAVST----IEEALEAAERLGYPVIVRAAYALGGLGS-- 549 (1435)
T ss_pred hhhhCCCcccceeeccHHHHHHHHHhhc-------ccccchhhHhH----HHHHHHHHHhcCcHHHHHHHHHhcCccc--
Confidence 4444 35667777788888888887753 22222222211 1111 23568999999998776654332
Q ss_pred eEEEcCccccccC-------CCCeEEEecccCCCeEEEEEEECCEEE-EEEEecCCCCccccccccceeeeecccccccc
Q 021495 178 LFLAYDRFSLSEL-------EPPMLLQEFVNHGGILFKIYIIGETIK-VVRRFSLPNVSKRELAKVVSVFRFPRVSSAAA 249 (311)
Q Consensus 178 m~lv~~~~~L~~l-------~~P~vvQEfInH~G~~~KVyVVGd~v~-~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~ 249 (311)
-...|+++|.++ .+.++++.=+. |=...-.=||-|.+- |..-..+.|+.+..+.+.++..--+++
T Consensus 550 -gfa~n~eeL~~l~~~a~a~s~QilvekSlk-GwkevEyevvrDa~~nciTvcnmen~DplgihtGdSiVvapsq----- 622 (1435)
T KOG0370|consen 550 -GFANNEEELQDLAAQALALSPQILVEKSLK-GWKEVEYEVVRDAYDNCITVCNMENFDPLGIHTGDSIVVAPSQ----- 622 (1435)
T ss_pred -cccccHHHHHHHHhhccccCceeeehhhhc-cccceEEEEEeccccchhhhcCCcccCcceeeccceEEEeecc-----
Confidence 346788888775 33355555443 222344446666543 333344556555444433332211110
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHHHHHHHhCCcE-eEEEEEEeCCCCCeEEEEEecC
Q 021495 250 SADDADLDPGIAELPPRPLLERLARELRHRLGLRL-FNIDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 250 ~a~~~~~~p~~~~~p~~~~~~~lA~~l~~~LGL~l-fG~Dvi~~~~tg~~~~ViDVNy 306 (311)
.+.. .....++..|..+-+.||.-- .++-...+..+- .|+|||||.
T Consensus 623 -----tlsd-----~ey~mlrttaikVirhlgvvGEcniQyaL~p~s~-~y~IiEVNa 669 (1435)
T KOG0370|consen 623 -----TLSD-----EEYQMLRTTAIKVIRHLGVVGECNIQYALNPYSL-EYRIIEVNA 669 (1435)
T ss_pred -----ccCh-----HHHHHHHhcchhheeccCCcccccceeeecccce-eEEEEEEEe
Confidence 0100 012346677777777777542 235556665444 799999996
No 116
>KOG2983 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.39 E-value=1.2e+02 Score=28.79 Aligned_cols=83 Identities=18% Similarity=0.344 Sum_probs=49.6
Q ss_pred eEEEeccc-CCCeEEEEEEECCEEEEEEEecCCCCccccccccceeeeecccccccccCCCCCCCCCCCCCCChHHHHHH
Q 021495 194 MLLQEFVN-HGGILFKIYIIGETIKVVRRFSLPNVSKRELAKVVSVFRFPRVSSAAASADDADLDPGIAELPPRPLLERL 272 (311)
Q Consensus 194 ~vvQEfIn-H~G~~~KVyVVGd~v~~~~R~Slpn~~~~~~~~~~~~~~~~~vs~~~~~a~~~~~~p~~~~~p~~~~~~~l 272 (311)
+|+-+.-+ |+|-.||+||=.++.+....|-..|. |++ ++. ..+.++.+
T Consensus 165 LvLrkWc~l~p~~EFRcFVKsn~lvg~~QRd~tny-----------Yd~--l~e------------------~kd~~k~l 213 (334)
T KOG2983|consen 165 LVLRKWCPLKPEMEFRCFVKSNELVGICQRDVTNY-----------YDV--LLE------------------EKDLLKGL 213 (334)
T ss_pred hhHhhhcCCCcCceEEEEEeccceeeeeeccchhH-----------HHH--HHH------------------HHHHHHHH
Confidence 45555554 67999999999999886543333222 110 000 01223333
Q ss_pred HHHH-----HHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCC
Q 021495 273 AREL-----RHRLGLRLFNIDMIREHGMRDVFYVIDINYFPG 309 (311)
Q Consensus 273 A~~l-----~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG 309 (311)
...+ +-.+-=.-|-|||-++.. + +.++||+|.|=|
T Consensus 214 I~eff~d~i~~kF~dedfvfDVYi~k~-~-kv~lID~Npf~~ 253 (334)
T KOG2983|consen 214 IEEFFKDKILFKFPDEDFVFDVYITKE-R-KVWLIDFNPFCG 253 (334)
T ss_pred HHHHHHhhhhccCCCCCeeEEEEecCC-C-cEEEEeccCccC
Confidence 3333 333444567899999863 3 799999999965
No 117
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=38.16 E-value=48 Score=33.27 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=31.2
Q ss_pred CccccCcEEEEccCCCCcchhhHhcCC---CCcEEEeeCc-CCCCCcc-------eeeEEEcCccccc
Q 021495 132 GKVRVPRQMVITKDSLSIPDQVFEAGL---KLPLVAKPLV-VDGSAKS-------HELFLAYDRFSLS 188 (311)
Q Consensus 132 ~~i~~P~~~~i~~~~~~~~~~l~~~~l---~fP~VvKP~~-a~GS~~s-------h~m~lv~~~~~L~ 188 (311)
.+|++|+..++.+.. +..+ ....+ ++|+|+|..+ ++|--.+ -++.+..+ +++.
T Consensus 42 ~GIpvp~~~va~t~e-ea~~--aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea~ 105 (422)
T PLN00124 42 YGVNVPKGAAASSLD-EVKK--ALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKAE 105 (422)
T ss_pred cCCCCCCceeeCCHH-HHHH--HHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHHH
Confidence 489999999885322 1111 12345 6899999986 3443333 34556655 5544
No 118
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=36.92 E-value=23 Score=27.73 Aligned_cols=20 Identities=25% Similarity=0.695 Sum_probs=16.6
Q ss_pred EecccCC--CeEEEEEEECCEE
Q 021495 197 QEFVNHG--GILFKIYIIGETI 216 (311)
Q Consensus 197 QEfInH~--G~~~KVyVVGd~v 216 (311)
+.|+||+ |-+|+|-.+|+.=
T Consensus 3 E~YLNHPtFGlLy~Vc~~~e~~ 24 (88)
T PF12058_consen 3 ETYLNHPTFGLLYRVCPVDEGQ 24 (88)
T ss_dssp --EEEETTTEEEEEEEEECTTE
T ss_pred cccccCCccchheeeeeCCCcc
Confidence 6799999 9999999999874
No 119
>TIGR02307 RNA_lig_RNL2 RNA ligase, Rnl2 family. Members of this family ligate (seal breaks in) RNA. Members so far include phage proteins that can counteract a host defense of cleavage of specific tRNA molecules, trypanosome ligases involved in RNA editing, but no prokaryotic host proteins.
Probab=33.90 E-value=2.4e+02 Score=27.50 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=26.8
Q ss_pred CCCeEEEecccCCCeEEEEEEECC-EEEEEEEecC
Q 021495 191 EPPMLLQEFVNHGGILFKIYIIGE-TIKVVRRFSL 224 (311)
Q Consensus 191 ~~P~vvQEfInH~G~~~KVyVVGd-~v~~~~R~Sl 224 (311)
..+.++||=| .|.=|.++|-++ .+.+..|.+.
T Consensus 24 ~~ewvatEKl--hGaNfsi~~~~~~~i~~akR~~~ 56 (325)
T TIGR02307 24 LTEWVAREKI--HGTNFSIIIERDFKVTCAKRTGI 56 (325)
T ss_pred CceEEEEEEe--cCcceEEEEeCCceEEEeecccc
Confidence 3489999999 588899999988 8888888853
No 120
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=33.89 E-value=1.5e+02 Score=23.88 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=43.1
Q ss_pred EEEEEEeCchhhhccchhHHHHHHHhCCCeEEEeeCCC----------CCCC-CCCccEEEEecCChhHHHHHHHHHHhC
Q 021495 29 LVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNR----------PLSD-QGPFDVVLHKLSGMEWCKIIEDYRQKH 97 (311)
Q Consensus 29 ~~Vgy~~~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~----------pl~~-qgp~DviLhK~t~~~~~~~l~~y~~~h 97 (311)
.+||-...+.| |-.. ..+...++|.++.+++++. .+.+ .++.|+++.=...+...+.+++-.+..
T Consensus 4 AVvGaS~~~~~---~g~~-v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g 79 (116)
T PF13380_consen 4 AVVGASDNPGK---FGYR-VLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALG 79 (116)
T ss_dssp EEET--SSTTS---HHHH-HHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT
T ss_pred EEEcccCCCCC---hHHH-HHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcC
Confidence 45555544444 4332 3334444999999999986 3343 368888877766666677777777777
Q ss_pred CCeeeeCch
Q 021495 98 PEVTILDPP 106 (311)
Q Consensus 98 P~v~ViDp~ 106 (311)
...+++-|-
T Consensus 80 ~~~v~~~~g 88 (116)
T PF13380_consen 80 VKAVWLQPG 88 (116)
T ss_dssp -SEEEE-TT
T ss_pred CCEEEEEcc
Confidence 777777775
No 121
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=31.98 E-value=1.4e+02 Score=23.32 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=15.5
Q ss_pred HHHHHHHhCCCeEEEeeCCC
Q 021495 47 KLEILARNKGISFVAIDQNR 66 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~ 66 (311)
-+..++++.|.+.+.++.+.
T Consensus 18 ~~~~~l~~~G~~v~~l~~~~ 37 (125)
T cd02065 18 IVAIALRDNGFEVIDLGVDV 37 (125)
T ss_pred HHHHHHHHCCCEEEEcCCCC
Confidence 35677899999998887654
No 122
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=30.86 E-value=1.5e+02 Score=31.45 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=88.8
Q ss_pred HHHHHHhCCCeEEEee-CCCC-CCC-------CC-CccEEEEecCChhHHHH-HHHH--------------------HH-
Q 021495 48 LEILARNKGISFVAID-QNRP-LSD-------QG-PFDVVLHKLSGMEWCKI-IEDY--------------------RQ- 95 (311)
Q Consensus 48 l~~~~~~~gi~~v~iD-~~~p-l~~-------qg-p~DviLhK~t~~~~~~~-l~~y--------------------~~- 95 (311)
|...|++.|++...+. ++.- +.+ +| ++|++ =|+..-+|... ++++ +.
T Consensus 399 L~d~a~qAG~~t~~~~~iedL~~d~~G~~~D~dg~~I~~v-fKlyPWE~~~~dira~~d~d~~~~~~f~g~~~h~~~L~~ 477 (619)
T PRK10507 399 MQQALHQAGFETKILRGLDELRWDAAGQLIDGDGRLVNCV-WKTWAWETALDQIREVSDREFAAVPIRTGHPQNEVRLID 477 (619)
T ss_pred HHHHHHHCCCceEEecCHHHeEECCCCcEECCCCCEeeee-eecccHHHhhhHHhhhccchhcccccccccccchhHHHH
Confidence 6788999999988883 4431 111 22 45554 45554333221 1112 10
Q ss_pred --hCCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCC
Q 021495 96 --KHPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSA 173 (311)
Q Consensus 96 --~hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~ 173 (311)
.++.+.+|+|+-++ .+-||..+ -.|=++.. . ..--.|.+... + .. + .+-..|.||+. |-
T Consensus 478 lL~~~~~~~iEP~Wk~-llsNKaiL-plLW~l~p--~-Hp~LLpayfe~----d--~~-l----~~~~yV~KPi~--GR- 538 (619)
T PRK10507 478 VLLRPEVLVFEPLWTV-IPGNKAIL-PVLWSLFP--H-HRYLLDTDFTV----N--DE-L----VKTGYAVKPIA--GR- 538 (619)
T ss_pred hhccCceEEEcccHHh-hcccHHHH-HHHHHhCC--C-CcccccccccC----C--cc-c----ccCCeEeccCC--Cc-
Confidence 23679999998665 34676643 34433321 1 22233333211 1 11 1 11249999999 66
Q ss_pred cceeeEEEcCc-ccccc----C-CCCeEEEecccC---CC--eEEEEEEECCEEEE-EEEec
Q 021495 174 KSHELFLAYDR-FSLSE----L-EPPMLLQEFVNH---GG--ILFKIYIIGETIKV-VRRFS 223 (311)
Q Consensus 174 ~sh~m~lv~~~-~~L~~----l-~~P~vvQEfInH---~G--~~~KVyVVGd~v~~-~~R~S 223 (311)
++-.+.|+.+. ..+.+ + +.++|.|+|+.= +| ..+=.|+|||+... ..|.+
T Consensus 539 EG~nV~i~~~~g~~~~~~~g~y~~~~~IyQ~~~~LP~f~~~~~~iGsw~vgg~~aG~giRed 600 (619)
T PRK10507 539 CGSNIDLVSHQEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGD 600 (619)
T ss_pred CCCCEEEEeCCCcEeeccCCCCCCCCeEEEEeccCcccCCCEEEEEEEEECCEEEEEEEecC
Confidence 67889999663 22222 2 467999999983 22 36889999998875 47765
No 123
>PTZ00445 p36-lilke protein; Provisional
Probab=30.57 E-value=90 Score=28.64 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.7
Q ss_pred HHHHHHHhCCCeEEEeeCCCCCCC
Q 021495 47 KLEILARNKGISFVAIDQNRPLSD 70 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~ 70 (311)
.|.+..++.||.+|..|++..|..
T Consensus 33 ~~v~~L~~~GIk~Va~D~DnTlI~ 56 (219)
T PTZ00445 33 KFVDLLNECGIKVIASDFDLTMIT 56 (219)
T ss_pred HHHHHHHHcCCeEEEecchhhhhh
Confidence 578889999999999999987654
No 124
>KOG2157 consensus Predicted tubulin-tyrosine ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.82 E-value=79 Score=32.53 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=23.9
Q ss_pred CCcEeEEEEEEeCCCCCeEEEEEecCCCCC
Q 021495 281 GLRLFNIDMIREHGMRDVFYVIDINYFPGR 310 (311)
Q Consensus 281 GL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~ 310 (311)
--.+||||+++|+. + .++.||||+.|.+
T Consensus 376 ~FElyG~DfliD~~-l-kpwLiEiNssP~~ 403 (497)
T KOG2157|consen 376 CFELYGFDFLIDEA-L-KPWLIEINASPDL 403 (497)
T ss_pred hhhhhCcceeecCC-C-CeEEEEeecCCcc
Confidence 45789999999974 5 6899999999975
No 125
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=28.50 E-value=1.2e+02 Score=24.90 Aligned_cols=37 Identities=24% Similarity=0.512 Sum_probs=20.8
Q ss_pred CccEEEEecCC---hhHH--HHHHHHHHhCCCeeeeCchhHHH
Q 021495 73 PFDVVLHKLSG---MEWC--KIIEDYRQKHPEVTILDPPDAIK 110 (311)
Q Consensus 73 p~DviLhK~t~---~~~~--~~l~~y~~~hP~v~ViDp~~ai~ 110 (311)
.||||+-|--. .+|. -.|-++. ++.|+.|||.|++++
T Consensus 78 ~~DvvlmRkDPPfD~~yi~aT~lLe~a-~~~gv~VvN~P~~lR 119 (119)
T PF02951_consen 78 DFDVVLMRKDPPFDMEYIYATYLLELA-ERQGVLVVNDPQSLR 119 (119)
T ss_dssp GSSEEEEE--S---HHHHHHHHHHHHH-HHTT-EEES-HHHHH
T ss_pred cCCEEEEecCCCCChHHHHHHHHHHHh-hhCCcEEEeChhhcC
Confidence 48888888533 2332 2233333 347999999999986
No 126
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=28.21 E-value=1.6e+02 Score=28.70 Aligned_cols=74 Identities=9% Similarity=0.133 Sum_probs=46.5
Q ss_pred ccEEEEEEeCchhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCC------------CCccEEEEecCChhHHHHHHHHH
Q 021495 27 ERLVVGYALTSKKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDYR 94 (311)
Q Consensus 27 ~~~~Vgy~~~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~q------------gp~DviLhK~t~~~~~~~l~~y~ 94 (311)
...+|+..+-+.=-+-- -+|...+.+.|..++.+|.+..-... +=+|+|+-|.........+.+
T Consensus 44 ~gk~l~~lF~epSTRTR--~SFE~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~iviR~~~~~~~~~~a~-- 119 (334)
T PRK12562 44 TGKNIALIFEKDSTRTR--CSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGHGQEVVETLAE-- 119 (334)
T ss_pred CCCEEEEEECCCCchhH--HHHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHhCCEEEEECCchHHHHHHHH--
Confidence 45566665543221111 14777899999999999875421111 228999999887554444443
Q ss_pred HhCCCeeeeCch
Q 021495 95 QKHPEVTILDPP 106 (311)
Q Consensus 95 ~~hP~v~ViDp~ 106 (311)
+-++||||=.
T Consensus 120 --~~~vPVINa~ 129 (334)
T PRK12562 120 --YAGVPVWNGL 129 (334)
T ss_pred --hCCCCEEECC
Confidence 4579999964
No 127
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=28.15 E-value=38 Score=33.34 Aligned_cols=172 Identities=20% Similarity=0.166 Sum_probs=88.2
Q ss_pred cEEEEE-EeCchhhhccchhHHHHHHHhCCCeEEEeeCCC-CCCCCCCc-c----E--EEEecCChhH--HHHHHHHHHh
Q 021495 28 RLVVGY-ALTSKKKKSFLQPKLEILARNKGISFVAIDQNR-PLSDQGPF-D----V--VLHKLSGMEW--CKIIEDYRQK 96 (311)
Q Consensus 28 ~~~Vgy-~~~~kK~~~~~~~~l~~~~~~~gi~~v~iD~~~-pl~~qgp~-D----v--iLhK~t~~~~--~~~l~~y~~~ 96 (311)
+..+++ ++...+...-.-+=|...|.+.|++--.+..+. -+.+.|-| | + .|-|+..-+| ++.+..-+ +
T Consensus 170 ~~~~~~s~~~D~~Ed~~tv~~LqD~a~~AG~et~fl~i~~igl~e~G~f~D~~n~~i~~lfKlypwE~m~~e~~~~~l-~ 248 (387)
T COG0754 170 RDRMGFSICQDTAEDRGTVQYLQDCAQEAGFETEFLYIDDIGLGEDGQFTDLDNQVIERLFKLYPWEDMLREELAQNL-E 248 (387)
T ss_pred cCceEEEeecChhhhhhHHHHHHHHHHhcCcccceeeehhcccCccceeecCCcchHhHHHhhcCHHHHHHHHHHHHh-c
Confidence 444555 444444433333346777788887654443322 22233322 1 1 1345554333 23344333 4
Q ss_pred CCCeeeeCchhHHHHhcCHHHHHHHHHhccccCCCCccccCcEEEEccCCCCcchhhHhcCCCCcEEEeeCcCCCCCcce
Q 021495 97 HPEVTILDPPDAIKHLHNRQSMLQDVADLNLSDCNGKVRVPRQMVITKDSLSIPDQVFEAGLKLPLVAKPLVVDGSAKSH 176 (311)
Q Consensus 97 hP~v~ViDp~~ai~~l~dR~~~l~~l~~l~~~~~~~~i~~P~~~~i~~~~~~~~~~l~~~~l~fP~VvKP~~a~GS~~sh 176 (311)
.+++.+|+|+=. .++-||..|-..=+.. +++.--.|.+... .... ...---|.||+. |- ++-
T Consensus 249 ~~~~~~lEPaWk-~ilsNK~lLplLW~~f----PnHp~LL~t~F~~----~~~~------~~~~~yv~KPl~--gR-EGa 310 (387)
T COG0754 249 NARTIFLEPAWK-SILSNKALLPLLWERF----PNHPNLLPTYFEP----DDEE------KLGESYVRKPLF--GR-EGA 310 (387)
T ss_pred CCCcEEechhHH-HHhccccHHHHHHHhC----CCCcccccccCCC----Cccc------cchhhhhccccc--cc-cCC
Confidence 589999999644 3456776543333332 1122233333322 1110 111126999999 65 567
Q ss_pred eeEEEcC-ccccccC-----CCCeEEEecccCCCeEEEE-----EEECCEEEE
Q 021495 177 ELFLAYD-RFSLSEL-----EPPMLLQEFVNHGGILFKI-----YIIGETIKV 218 (311)
Q Consensus 177 ~m~lv~~-~~~L~~l-----~~P~vvQEfInH~G~~~KV-----yVVGd~v~~ 218 (311)
++.|+.+ .+.+... +.++|.|||+.=+-.--+- +||||....
T Consensus 311 Nv~i~~~~~~~~~~~~G~Yg~eg~IyQe~~~Lpk~~~~Y~~vgSw~v~d~~cG 363 (387)
T COG0754 311 NVSIFEDAGKVLDKADGPYGEEGMIYQEFYPLPKFGDSYYQVGSWVVGDEACG 363 (387)
T ss_pred CeeEEecCCceeecCCCCccccchhhhhhccCcccCCeeEEEEEEEECcccce
Confidence 8999977 4445444 4579999999855333333 455555543
No 128
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=28.10 E-value=1.1e+02 Score=23.90 Aligned_cols=66 Identities=18% Similarity=0.111 Sum_probs=34.3
Q ss_pred ccchhHHHHHHHhCCCeE--EEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHHhC-CCeeeeCchh
Q 021495 42 SFLQPKLEILARNKGISF--VAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQKH-PEVTILDPPD 107 (311)
Q Consensus 42 ~~~~~~l~~~~~~~gi~~--v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~h-P~v~ViDp~~ 107 (311)
|+.-.++.++++++|+++ .......--+.-..+|+||-=..=......+++....+ -.+.+|||-+
T Consensus 17 S~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 17 SLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVINGAQ 85 (95)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeChhh
Confidence 344456788999999964 23332221111246798874211111234455554442 3477888743
No 129
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=27.32 E-value=1.5e+02 Score=26.28 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=36.6
Q ss_pred HHHHHHhCCCeEEEeeCCCCCCCCCCccEEE---EecCChhHHHHHHHHHHhCCCeeeeCchhHHHHhcCHHH
Q 021495 48 LEILARNKGISFVAIDQNRPLSDQGPFDVVL---HKLSGMEWCKIIEDYRQKHPEVTILDPPDAIKHLHNRQS 117 (311)
Q Consensus 48 l~~~~~~~gi~~v~iD~~~pl~~qgp~DviL---hK~t~~~~~~~l~~y~~~hP~v~ViDp~~ai~~l~dR~~ 117 (311)
+-+.++++||.+-.|+.+.+|+. +.+|+ ..+.+.+..+.|.+|.++ -|.+|+.+...+..-.++..
T Consensus 35 ~y~al~~~gi~vDvv~~~~dL~~---Ykllv~P~~~~l~~~~~~~L~~yV~~-GG~li~~~~tg~~d~~~~~~ 103 (207)
T PF08532_consen 35 WYRALRELGIPVDVVSPDDDLSG---YKLLVLPSLYILSPEFAERLRAYVEN-GGTLILTPRTGVKDENGRVR 103 (207)
T ss_dssp HHHHHHTTT--EEEE-TTS--TT----SEEEES--SC--HHH---HHHHHT--SS-EEE-TTTT-B-TTS---
T ss_pred HHHHHHHcCCceEEecCcCCccc---CcEEEEeeEEEEChHHHHHHHHHHHC-CCEEEEEcccCCcCCCCcCc
Confidence 56688999999999988887775 66665 334556778889999965 77899999888887777764
No 130
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=26.35 E-value=1.6e+02 Score=28.54 Aligned_cols=72 Identities=10% Similarity=0.149 Sum_probs=45.6
Q ss_pred ccEEEEEEeCch-hhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCC------------CccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTSK-KKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~k-K~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qg------------p~DviLhK~t~~~~~~~l~~y 93 (311)
...+++..+.+. =|.+ -+|...+.+.|-..+.+|.+..-...| =+|+|.-|..+......+.+
T Consensus 44 ~gk~l~~lF~epSTRTR---~SFe~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y~D~Iv~R~~~~~~~~~~a~- 119 (336)
T PRK03515 44 TGKNIALIFEKDSTRTR---CSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAE- 119 (336)
T ss_pred CCCEEEEEecCCChhHH---HHHHHHHHHcCCcEEEeCCccccCCCCCCHHHHHHHHHHhCcEEEEEeCChHHHHHHHH-
Confidence 455566554432 2211 147778899999999998764221122 28999999887655444443
Q ss_pred HHhCCCeeeeCc
Q 021495 94 RQKHPEVTILDP 105 (311)
Q Consensus 94 ~~~hP~v~ViDp 105 (311)
+-++||||=
T Consensus 120 ---~~~vPVINa 128 (336)
T PRK03515 120 ---YAGVPVWNG 128 (336)
T ss_pred ---hCCCCEEEC
Confidence 457999994
No 131
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=26.21 E-value=1.5e+02 Score=28.74 Aligned_cols=74 Identities=11% Similarity=0.093 Sum_probs=46.0
Q ss_pred ccEEEEEEeCch-hhhccchhHHHHHHHhCCCeEEEeeCCCCCCCC------------CCccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTSK-KKKSFLQPKLEILARNKGISFVAIDQNRPLSDQ------------GPFDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~k-K~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~q------------gp~DviLhK~t~~~~~~~l~~y 93 (311)
...+|+..+.+. =|.++ +|...+.+.|..++.+|.+..-... .=+|+|+-|.........+.+
T Consensus 45 ~gk~v~~lF~epSTRTR~---SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~rvls~y~D~iviR~~~~~~~~~~a~- 120 (331)
T PRK02102 45 EGKNIALIFEKTSTRTRC---AFEVAAIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRMYDGIEYRGFKQEIVEELAK- 120 (331)
T ss_pred CCCEEEEEeCCCChhHHH---HHHHHHHHcCCCEEEcCcccccCCCCcCHHHHHHHHhhcCCEEEEECCchHHHHHHHH-
Confidence 455566554432 22211 4677899999999998875422111 228999999877554444443
Q ss_pred HHhCCCeeeeCchh
Q 021495 94 RQKHPEVTILDPPD 107 (311)
Q Consensus 94 ~~~hP~v~ViDp~~ 107 (311)
+-++||||=.+
T Consensus 121 ---~~~vPVINa~~ 131 (331)
T PRK02102 121 ---YSGVPVWNGLT 131 (331)
T ss_pred ---hCCCCEEECCC
Confidence 35799999543
No 132
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=26.00 E-value=3.1e+02 Score=21.31 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=17.5
Q ss_pred hHHHHHHHhCCCeEEEeeCCCC
Q 021495 46 PKLEILARNKGISFVAIDQNRP 67 (311)
Q Consensus 46 ~~l~~~~~~~gi~~v~iD~~~p 67 (311)
..+..++++.|+++.-+|.+.+
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~ 39 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVP 39 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-
T ss_pred HHHHHHHHHCCCeEEEECCCCC
Confidence 3467888999999999988764
No 133
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=25.94 E-value=54 Score=24.94 Aligned_cols=15 Identities=20% Similarity=0.581 Sum_probs=11.3
Q ss_pred EEEeCCCCCeEEEEEe
Q 021495 289 MIREHGMRDVFYVIDI 304 (311)
Q Consensus 289 vi~~~~tg~~~~ViDV 304 (311)
++.|-++| +||++|+
T Consensus 10 vL~DP~SG-~Yy~vd~ 24 (75)
T PF15232_consen 10 VLQDPESG-QYYVVDA 24 (75)
T ss_pred EeecCCCC-CEEEEec
Confidence 56677777 7888886
No 134
>COG0127 Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism]
Probab=25.40 E-value=99 Score=27.81 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCC
Q 021495 267 PLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGRY 311 (311)
Q Consensus 267 ~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~~ 311 (311)
...+....+++.+-.+ .|.=+|.|+ +| +.|=-.|.|||-|
T Consensus 46 tf~enA~~Ka~~~a~~--~g~pviaDD-SG--L~v~aL~G~PGvY 85 (194)
T COG0127 46 TFEENALLKARAAAKA--TGLPVIADD-SG--LCVDALNGFPGVY 85 (194)
T ss_pred HHHHHHHHHHHHHHhh--cCCcEEEec-Cc--eEEeccCCCCcce
Confidence 4455566666665555 466667775 67 6566699999987
No 135
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=23.83 E-value=7.4e+02 Score=24.77 Aligned_cols=55 Identities=20% Similarity=0.194 Sum_probs=35.8
Q ss_pred EEEeeCcCCCCCcceeeEEEcCccccccCC----------------CCeEEEecccCC-----C-eEEEEEEECCEEEEE
Q 021495 162 LVAKPLVVDGSAKSHELFLAYDRFSLSELE----------------PPMLLQEFVNHG-----G-ILFKIYIIGETIKVV 219 (311)
Q Consensus 162 ~VvKP~~a~GS~~sh~m~lv~~~~~L~~l~----------------~P~vvQEfInH~-----G-~~~KVyVVGd~v~~~ 219 (311)
+|||-.. |+ .+-++.-|.+.+++..|+ ..+++||=|..- + -+==||.||.++++.
T Consensus 260 ViVKADa--GT-YGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~avAEPVVYmid~~vvgg 336 (403)
T TIGR02049 260 VIVKADA--GT-YGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEAVAEPVVYMIGRTVTGG 336 (403)
T ss_pred EEEEcCC--CC-CCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCcccCceEEEECCEEeEE
Confidence 5677554 66 677778888888876651 138899866432 1 234478888887763
No 136
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=23.43 E-value=1.9e+02 Score=27.61 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=46.4
Q ss_pred ccEEEEEEeCc-hhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCC------------CccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~-kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qg------------p~DviLhK~t~~~~~~~l~~y 93 (311)
...+++-.+.+ +=|.+ -+|...+.+.|-..+.++.+..-...| =+|+|+-|.........+.
T Consensus 37 ~gk~~~~lF~epSTRTR---~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iviR~~~~~~~~~~a-- 111 (302)
T PRK14805 37 AGKSVVMLFEKPSLRTR---VSFDIGINKLGGHCLYLDQQNGALGKRESVADFAANLSCWADAIVARVFSHSTIEQLA-- 111 (302)
T ss_pred CCCEEEEEecCCCchHH---HHHHHHHHHcCCcEEECCCCcCcCCCCcCHHHHHHHHHHhCCEEEEeCCChhHHHHHH--
Confidence 35556654432 22221 147778999999999998654221112 2899999987755444443
Q ss_pred HHhCCCeeeeCchhH
Q 021495 94 RQKHPEVTILDPPDA 108 (311)
Q Consensus 94 ~~~hP~v~ViDp~~a 108 (311)
++-++||||-...
T Consensus 112 --~~~~vPVINa~~~ 124 (302)
T PRK14805 112 --EHGSVPVINALCD 124 (302)
T ss_pred --HhCCCCEEECCCC
Confidence 3457999997654
No 137
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.30 E-value=71 Score=29.50 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=56.3
Q ss_pred CccEEEEEEeCchhhhccchhH------HHHHHHhCCCeEEEeeCCCCCCCCCCccEEEEecCChhHHHHHHHHHH-hCC
Q 021495 26 PERLVVGYALTSKKKKSFLQPK------LEILARNKGISFVAIDQNRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQ-KHP 98 (311)
Q Consensus 26 ~~~~~Vgy~~~~kK~~~~~~~~------l~~~~~~~gi~~v~iD~~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~-~hP 98 (311)
....+|-|.-++.-.+.|+.+. +..+.-.-.+.|+++|++-......+-..+|+++ .++.+ ..-
T Consensus 54 ~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l---------~~~~k~~~~ 124 (235)
T COG2874 54 MNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLL---------LEFIKRWEK 124 (235)
T ss_pred hCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccChHHHHHHHHHH---------HhhHHhhcC
Confidence 5688999999999888888763 3444455567788887763222222222222222 22222 235
Q ss_pred CeeeeCchhHHHHhcCHHHHHHHHHh
Q 021495 99 EVTILDPPDAIKHLHNRQSMLQDVAD 124 (311)
Q Consensus 99 ~v~ViDp~~ai~~l~dR~~~l~~l~~ 124 (311)
+|++||++.++..=-++...++-+..
T Consensus 125 dViIIDSls~~~~~~~~~~vl~fm~~ 150 (235)
T COG2874 125 DVIIIDSLSAFATYDSEDAVLNFMTF 150 (235)
T ss_pred CEEEEecccHHhhcccHHHHHHHHHH
Confidence 89999999999886666655555544
No 138
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=23.07 E-value=2.1e+02 Score=27.73 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=46.3
Q ss_pred ccEEEEEEeCch-hhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCC------------CccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTSK-KKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~k-K~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qg------------p~DviLhK~t~~~~~~~l~~y 93 (311)
...+|+..+.+. =|.+ -+|...+.+.|-..+.+|.+..-...| =+|+|.-|.........+.+
T Consensus 45 ~gk~v~~lF~epSTRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iv~R~~~~~~~~~~a~- 120 (334)
T PRK01713 45 KGKNIALIFEKTSTRTR---CAFEVAAYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRMYDAIEYRGFKQSIVNELAE- 120 (334)
T ss_pred CCCEEEEEeCCCCchHH---HHHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEEcCchHHHHHHHH-
Confidence 456666655432 2211 147778899999999998764221111 28999999887655444443
Q ss_pred HHhCCCeeeeCch
Q 021495 94 RQKHPEVTILDPP 106 (311)
Q Consensus 94 ~~~hP~v~ViDp~ 106 (311)
+-++||||=.
T Consensus 121 ---~~~vPVINa~ 130 (334)
T PRK01713 121 ---YAGVPVFNGL 130 (334)
T ss_pred ---hCCCCEEECC
Confidence 3579999964
No 139
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=22.52 E-value=2.1e+02 Score=27.20 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=38.8
Q ss_pred HHHHHHHhCCCeEEEeeCCCCCCCCC------------CccEEEEecCChhHHHHHHHHHHhCCCeeeeCch
Q 021495 47 KLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPP 106 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~~~pl~~qg------------p~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~ 106 (311)
+|...+.+.|-..+.+|.+..-...| =+|+|+-|..+......+.+ +-++||||=.
T Consensus 56 SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y~D~iv~R~~~~~~~~~~a~----~~~vPVINa~ 123 (304)
T TIGR00658 56 SFEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRYVDGIMARVYKHEDVEELAK----YASVPVINGL 123 (304)
T ss_pred HHHHHHHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHhCCEEEEECCChHHHHHHHH----hCCCCEEECC
Confidence 46778999999999998754221122 28999999887655444443 4579999953
No 140
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=22.51 E-value=2.2e+02 Score=27.63 Aligned_cols=72 Identities=7% Similarity=0.092 Sum_probs=45.2
Q ss_pred ccEEEEEEeCc-hhhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCC------------CccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTS-KKKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~-kK~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qg------------p~DviLhK~t~~~~~~~l~~y 93 (311)
...+|+..+-+ +=|.+ -+|...+.+.|-..+.+|.+..-...| =+|+|+-|..+......+.+
T Consensus 44 ~gk~l~~lF~epSTRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y~D~iviR~~~~~~~~~~a~- 119 (332)
T PRK04284 44 KGKNIALIFEKDSTRTR---CAFEVAAYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGMYDGIEYRGFSQRTVETLAE- 119 (332)
T ss_pred CCCEEEEEecCCChhHH---HHHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHhCCEEEEecCchHHHHHHHH-
Confidence 45556655443 22211 147778999999999988764221111 28999999887555444443
Q ss_pred HHhCCCeeeeCc
Q 021495 94 RQKHPEVTILDP 105 (311)
Q Consensus 94 ~~~hP~v~ViDp 105 (311)
+-++||||=
T Consensus 120 ---~s~vPVINa 128 (332)
T PRK04284 120 ---YSGVPVWNG 128 (332)
T ss_pred ---hCCCCEEEC
Confidence 357999994
No 141
>PRK14680 hypothetical protein; Provisional
Probab=22.44 E-value=1.9e+02 Score=24.25 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhCCcEe--------E-EEEEEeCCCCCeEEEEEecC
Q 021495 267 PLLERLARELRHRLGLRLF--------N-IDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 267 ~~~~~lA~~l~~~LGL~lf--------G-~Dvi~~~~tg~~~~ViDVNy 306 (311)
..-+++|...-+..|.++. | +|+|..+ |+.+++|||-+
T Consensus 10 ~~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~--~~~lVFVEVKt 56 (134)
T PRK14680 10 QHGEDAAAALLQRTGHRILARNWRHGGLELDIVCED--GDTIVFVEVKT 56 (134)
T ss_pred HHHHHHHHHHHHHCCCEEEEeecCCCCCeEEEEEEe--CCEEEEEEEEe
Confidence 3467888888888898875 5 9999975 34799999975
No 142
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=22.12 E-value=4e+02 Score=21.07 Aligned_cols=75 Identities=9% Similarity=0.127 Sum_probs=43.0
Q ss_pred ccchhHHHHHHHhCCCeEEEeeC---CCCCCCCCCccEEEEecCChhHHHHHHHHHHh-CCCeeeeCchhHHHHhcCHHH
Q 021495 42 SFLQPKLEILARNKGISFVAIDQ---NRPLSDQGPFDVVLHKLSGMEWCKIIEDYRQK-HPEVTILDPPDAIKHLHNRQS 117 (311)
Q Consensus 42 ~~~~~~l~~~~~~~gi~~v~iD~---~~pl~~qgp~DviLhK~t~~~~~~~l~~y~~~-hP~v~ViDp~~ai~~l~dR~~ 117 (311)
++.-.++.++|+++|+++. +.- ..--+....+|+||.=..-......+++.... .-.|.+|||-+-....+|=..
T Consensus 14 s~la~km~~~a~~~gi~~~-i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg~~~~dg~~ 92 (99)
T cd05565 14 GLLANALNKGAKERGVPLE-AAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYIELTRDPDG 92 (99)
T ss_pred HHHHHHHHHHHHHCCCcEE-EEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHhHHhCCHHH
Confidence 4555677889999999753 322 11111234789998533322234445555544 345888998766644555433
No 143
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=21.98 E-value=2.1e+02 Score=27.31 Aligned_cols=74 Identities=8% Similarity=0.094 Sum_probs=45.5
Q ss_pred ccEEEEEEeCch-hhhccchhHHHHHHHhCCCeEEEeeCCCCCCCCC------------CccEEEEecCChhHHHHHHHH
Q 021495 27 ERLVVGYALTSK-KKKSFLQPKLEILARNKGISFVAIDQNRPLSDQG------------PFDVVLHKLSGMEWCKIIEDY 93 (311)
Q Consensus 27 ~~~~Vgy~~~~k-K~~~~~~~~l~~~~~~~gi~~v~iD~~~pl~~qg------------p~DviLhK~t~~~~~~~l~~y 93 (311)
...+|+..+-+. =|.+ -+|...+.+.|...+.+|.+..-...| =+|+|.-|..+......+.
T Consensus 42 ~gk~v~~lF~e~STRTR---~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~~D~iv~R~~~~~~~~~~a-- 116 (304)
T PRK00779 42 KGKTLAMIFEKPSTRTR---VSFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRYVDAIMIRTFEHETLEELA-- 116 (304)
T ss_pred CCCEEEEEecCCCchHH---HHHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHhCCEEEEcCCChhHHHHHH--
Confidence 455566544432 1211 147779999999999998754311111 2899998887754433333
Q ss_pred HHhCCCeeeeCchh
Q 021495 94 RQKHPEVTILDPPD 107 (311)
Q Consensus 94 ~~~hP~v~ViDp~~ 107 (311)
++-+++|||=-.
T Consensus 117 --~~~~vPVINag~ 128 (304)
T PRK00779 117 --EYSTVPVINGLT 128 (304)
T ss_pred --HhCCCCEEeCCC
Confidence 345799999643
No 144
>PF01725 Ham1p_like: Ham1 family; InterPro: IPR002637 This family contains the Saccharomyces cerevisiae (Baker's yeast) HAM1 protein P47119 from SWISSPROT and other hypothetical archaeal, bacterial and Caenorhabditis elegans proteins. S. cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine (HAP) which can be a natural product of monooxygenase activity on adenine. HAM1 protein protects the cell from HAP, either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions [].; GO: 0016787 hydrolase activity; PDB: 3TQU_A 1VP2_B 3S86_D 1B78_A 2MJP_B 2Q16_A 2PYU_A 1K7K_A 2ZTI_A 2DVP_A ....
Probab=21.82 E-value=42 Score=29.71 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHhCCcEeEEEEEEeCCCCCeEEEEEecCCCCCC
Q 021495 266 RPLLERLARELRHRLGLRLFNIDMIREHGMRDVFYVIDINYFPGRY 311 (311)
Q Consensus 266 ~~~~~~lA~~l~~~LGL~lfG~Dvi~~~~tg~~~~ViDVNyfPG~~ 311 (311)
.+-...=|+.+.+.+|.- +|.|+ +| ++|--.|.|||-|
T Consensus 46 ~enA~~KA~~~~~~~~~p-----vi~dD-SG--L~v~aL~g~PG~~ 83 (189)
T PF01725_consen 46 EENALIKAKAAAQQLGKP-----VIADD-SG--LEVDALNGFPGVY 83 (189)
T ss_dssp HHHHHHHHHHHHHHHSSS-----EEEEE-EE--EEEGGGTTTBGGG
T ss_pred HHHHHHHHHHHHHHhCCC-----EEEeC-cE--EeHhhhCCCcCCc
Confidence 344556678888888887 66664 67 6555599999965
No 145
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=21.59 E-value=4.6e+02 Score=21.51 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=20.4
Q ss_pred EEEEEeCchhhh------ccchh--HHHHHHHhCCCeEEEe
Q 021495 30 VVGYALTSKKKK------SFLQP--KLEILARNKGISFVAI 62 (311)
Q Consensus 30 ~Vgy~~~~kK~~------~~~~~--~l~~~~~~~gi~~v~i 62 (311)
++||+=...+.+ +...+ .+.++|+++|+.++.+
T Consensus 1 ~~~Y~RvSt~~q~~~~~~sle~Q~~~l~~~a~~~g~~i~~~ 41 (140)
T cd03770 1 TALYCRLSRDDDLDGESNSIENQKAILEEYAKENGLENIRH 41 (140)
T ss_pred CEEEEEECcccccccccCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 367765554432 34333 3577899999987654
No 146
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=21.56 E-value=2.3e+02 Score=27.08 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=39.8
Q ss_pred HHHHHHHhCCCeEEEeeC-CCCCCCCC------------CccEEEEecCChhHHHHHHHHHHhCCCeeeeCchh
Q 021495 47 KLEILARNKGISFVAIDQ-NRPLSDQG------------PFDVVLHKLSGMEWCKIIEDYRQKHPEVTILDPPD 107 (311)
Q Consensus 47 ~l~~~~~~~gi~~v~iD~-~~pl~~qg------------p~DviLhK~t~~~~~~~l~~y~~~hP~v~ViDp~~ 107 (311)
+|...+.+.|-..+.++. +..-...| =+|+|.-|..+......+.+ +-++||||-.+
T Consensus 56 SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y~D~iviR~~~~~~~~~~a~----~s~vPVINa~~ 125 (301)
T TIGR00670 56 SFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGYSDAIVIRHPLEGAARLAAE----VSEVPVINAGD 125 (301)
T ss_pred HHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHhCCEEEEECCchhHHHHHHh----hCCCCEEeCCC
Confidence 477789999999999988 43211111 28999999877554444443 45799999865
No 147
>PRK14679 hypothetical protein; Provisional
Probab=20.28 E-value=2.4e+02 Score=23.56 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCcEe--------E-EEEEEeCCCCCeEEEEEecC
Q 021495 268 LLERLARELRHRLGLRLF--------N-IDMIREHGMRDVFYVIDINY 306 (311)
Q Consensus 268 ~~~~lA~~l~~~LGL~lf--------G-~Dvi~~~~tg~~~~ViDVNy 306 (311)
.-|++|...-+.-|.++. | +|+|... |+.+++|||-+
T Consensus 20 ~gE~~A~~~L~~~Gy~Il~rN~r~~~GEIDiIa~~--~~~lVFVEVKt 65 (128)
T PRK14679 20 SAEGLALLALMLKGYRPLARRFAAAGGEIDLIVRR--GRTIAFVEVKA 65 (128)
T ss_pred HHHHHHHHHHHHCCCEEEeeeccCCCCeEEEEEEe--CCEEEEEEEEe
Confidence 467888888888999886 5 9999975 34799999965
Done!